Query 005959
Match_columns 667
No_of_seqs 595 out of 3112
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 16:18:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 2E-140 3E-145 1142.7 28.2 496 134-659 1-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 9.1E-43 2E-47 379.6 11.4 199 433-661 35-262 (506)
3 PLN02336 phosphoethanolamine N 99.8 5.5E-18 1.2E-22 190.0 15.0 102 254-358 38-145 (475)
4 COG2226 UbiE Methylase involve 99.7 2.1E-17 4.5E-22 169.2 13.9 107 253-361 51-162 (238)
5 PF01209 Ubie_methyltran: ubiE 99.7 6.6E-17 1.4E-21 165.8 10.1 106 253-359 47-157 (233)
6 PRK10258 biotin biosynthesis p 99.7 6.1E-16 1.3E-20 159.2 12.9 135 219-361 12-146 (251)
7 PLN02233 ubiquinone biosynthes 99.7 1.1E-15 2.5E-20 159.0 14.7 107 253-360 73-187 (261)
8 PF08241 Methyltransf_11: Meth 99.7 4.1E-16 8.8E-21 134.2 9.2 93 258-353 1-95 (95)
9 PF13489 Methyltransf_23: Meth 99.5 2E-13 4.4E-18 129.2 13.3 98 253-359 22-119 (161)
10 PRK14103 trans-aconitate 2-met 99.5 1E-13 2.2E-18 143.3 12.2 100 253-357 29-128 (255)
11 TIGR02072 BioC biotin biosynth 99.5 1.7E-13 3.7E-18 138.0 13.2 106 253-360 34-140 (240)
12 KOG1540 Ubiquinone biosynthesi 99.5 1.6E-13 3.5E-18 139.5 12.4 108 250-358 97-217 (296)
13 COG2227 UbiG 2-polyprenyl-3-me 99.5 6E-14 1.3E-18 142.3 8.7 105 253-361 59-167 (243)
14 COG4106 Tam Trans-aconitate me 99.5 1.9E-13 4.2E-18 136.0 11.7 204 253-496 30-234 (257)
15 PLN02244 tocopherol O-methyltr 99.5 2.8E-13 6E-18 146.4 13.7 103 253-358 118-226 (340)
16 PLN02396 hexaprenyldihydroxybe 99.5 2E-13 4.4E-18 146.2 12.5 103 253-359 131-239 (322)
17 TIGR02752 MenG_heptapren 2-hep 99.5 4.4E-13 9.5E-18 136.0 13.8 105 254-359 46-155 (231)
18 PRK05785 hypothetical protein; 99.5 2.3E-13 5E-18 138.9 11.4 89 254-348 52-140 (226)
19 PRK11088 rrmA 23S rRNA methylt 99.5 6.1E-13 1.3E-17 139.2 13.9 105 253-365 85-191 (272)
20 PTZ00098 phosphoethanolamine N 99.5 4.5E-13 9.8E-18 139.8 12.8 115 234-358 41-159 (263)
21 PRK01683 trans-aconitate 2-met 99.4 8.1E-13 1.8E-17 136.5 13.0 102 253-357 31-132 (258)
22 PRK11036 putative S-adenosyl-L 99.4 1E-12 2.2E-17 136.1 12.0 103 253-359 44-153 (255)
23 PF05219 DREV: DREV methyltran 99.4 2E-13 4.2E-18 140.2 6.4 199 210-430 54-255 (265)
24 PF13847 Methyltransf_31: Meth 99.4 9.8E-13 2.1E-17 125.4 10.8 103 253-357 3-112 (152)
25 TIGR00740 methyltransferase, p 99.4 2E-12 4.2E-17 132.5 13.7 104 253-359 53-165 (239)
26 PRK08317 hypothetical protein; 99.4 3.4E-12 7.4E-17 128.3 13.7 103 254-357 20-126 (241)
27 PF12847 Methyltransf_18: Meth 99.4 1.6E-12 3.5E-17 116.4 10.1 101 254-356 2-112 (112)
28 PRK11207 tellurite resistance 99.4 3.3E-12 7.2E-17 127.6 12.5 98 254-355 31-134 (197)
29 TIGR00477 tehB tellurite resis 99.4 6.4E-12 1.4E-16 125.3 13.4 98 254-355 31-133 (195)
30 PF13649 Methyltransf_25: Meth 99.4 9.7E-13 2.1E-17 116.9 6.7 93 257-349 1-101 (101)
31 PRK15068 tRNA mo(5)U34 methylt 99.3 5.4E-12 1.2E-16 135.4 12.9 100 254-357 123-228 (322)
32 PRK15451 tRNA cmo(5)U34 methyl 99.3 7.3E-12 1.6E-16 129.3 13.1 103 253-358 56-167 (247)
33 PLN02336 phosphoethanolamine N 99.3 6.9E-12 1.5E-16 140.9 14.0 103 253-358 266-372 (475)
34 PLN02490 MPBQ/MSBQ methyltrans 99.3 6E-12 1.3E-16 135.7 12.8 102 254-357 114-217 (340)
35 KOG4300 Predicted methyltransf 99.3 2.9E-12 6.3E-17 126.8 9.3 104 254-360 77-187 (252)
36 PRK11873 arsM arsenite S-adeno 99.3 8.1E-12 1.7E-16 130.3 11.8 105 253-358 77-186 (272)
37 TIGR00452 methyltransferase, p 99.3 1.7E-11 3.7E-16 131.0 12.7 101 253-357 121-227 (314)
38 PF08242 Methyltransf_12: Meth 99.3 1.1E-12 2.5E-17 115.6 2.5 92 258-351 1-99 (99)
39 TIGR03587 Pse_Me-ase pseudamin 99.3 3.2E-11 7E-16 121.4 12.7 100 254-357 44-144 (204)
40 PRK06922 hypothetical protein; 99.3 1.6E-11 3.5E-16 140.3 10.7 103 254-357 419-539 (677)
41 PRK12335 tellurite resistance 99.2 5E-11 1.1E-15 125.8 13.0 98 255-356 122-224 (287)
42 PRK00107 gidB 16S rRNA methylt 99.2 6.9E-11 1.5E-15 117.6 13.1 117 254-390 46-167 (187)
43 smart00138 MeTrc Methyltransfe 99.2 4.1E-11 8.8E-16 125.3 11.6 103 253-355 99-242 (264)
44 smart00828 PKS_MT Methyltransf 99.2 3.6E-11 7.7E-16 121.5 10.8 99 256-357 2-106 (224)
45 PF02353 CMAS: Mycolic acid cy 99.2 4.2E-11 9.2E-16 125.8 11.4 101 253-358 62-169 (273)
46 PRK00216 ubiE ubiquinone/menaq 99.2 1.5E-10 3.2E-15 117.0 13.9 104 254-358 52-161 (239)
47 TIGR01934 MenG_MenH_UbiE ubiqu 99.2 1.3E-10 2.8E-15 116.1 13.4 104 253-357 39-145 (223)
48 PRK11705 cyclopropane fatty ac 99.2 7.2E-11 1.6E-15 129.6 12.5 100 254-358 168-270 (383)
49 PRK00121 trmB tRNA (guanine-N( 99.2 4.2E-11 9.1E-16 120.2 9.1 103 254-358 41-159 (202)
50 KOG1270 Methyltransferases [Co 99.2 2.4E-11 5.2E-16 124.5 7.0 100 254-360 90-200 (282)
51 PF03848 TehB: Tellurite resis 99.2 1.5E-10 3.2E-15 115.4 11.7 99 254-356 31-134 (192)
52 PF05401 NodS: Nodulation prot 99.2 2.7E-10 5.9E-15 113.1 12.3 100 253-356 43-147 (201)
53 TIGR03840 TMPT_Se_Te thiopurin 99.2 3.1E-10 6.8E-15 115.1 13.1 100 254-356 35-153 (213)
54 PF07021 MetW: Methionine bios 99.2 1.1E-10 2.4E-15 115.6 9.4 100 253-359 13-113 (193)
55 COG2230 Cfa Cyclopropane fatty 99.2 2.4E-10 5.1E-15 119.7 12.3 129 219-360 45-181 (283)
56 PRK06202 hypothetical protein; 99.1 3.8E-10 8.2E-15 115.1 13.0 103 253-359 60-170 (232)
57 KOG1541 Predicted protein carb 99.1 2.6E-10 5.6E-15 114.1 11.2 103 253-359 50-164 (270)
58 PRK11188 rrmJ 23S rRNA methylt 99.1 2.9E-10 6.2E-15 115.0 11.4 99 254-359 52-169 (209)
59 TIGR02469 CbiT precorrin-6Y C5 99.1 1.1E-09 2.4E-14 99.2 13.5 98 254-356 20-123 (124)
60 PRK01544 bifunctional N5-gluta 99.1 1.3E-09 2.8E-14 123.8 17.0 100 254-355 139-269 (506)
61 TIGR00537 hemK_rel_arch HemK-r 99.1 1.8E-09 3.9E-14 105.9 14.4 100 255-359 21-144 (179)
62 KOG3010 Methyltransferase [Gen 99.1 1.7E-10 3.7E-15 117.0 7.2 125 220-355 5-137 (261)
63 PF05175 MTS: Methyltransferas 99.1 2E-09 4.4E-14 105.1 14.2 100 254-356 32-141 (170)
64 TIGR00138 gidB 16S rRNA methyl 99.1 9.1E-10 2E-14 108.9 11.9 96 254-356 43-143 (181)
65 TIGR00091 tRNA (guanine-N(7)-) 99.1 4.3E-10 9.4E-15 112.1 9.3 102 254-357 17-134 (194)
66 PRK13944 protein-L-isoaspartat 99.0 1.6E-09 3.4E-14 109.0 12.6 95 254-355 73-173 (205)
67 TIGR02021 BchM-ChlM magnesium 99.0 1.1E-09 2.3E-14 110.8 10.6 96 253-354 55-157 (219)
68 PRK09489 rsmC 16S ribosomal RN 99.0 2.6E-09 5.6E-14 115.7 14.1 98 255-356 198-304 (342)
69 PRK05134 bifunctional 3-demeth 99.0 2.3E-09 5E-14 109.1 12.3 102 253-358 48-154 (233)
70 TIGR00406 prmA ribosomal prote 99.0 2.7E-09 5.9E-14 112.8 12.6 99 254-358 160-262 (288)
71 TIGR02081 metW methionine bios 99.0 2E-09 4.4E-14 106.9 10.9 95 254-356 14-110 (194)
72 PRK13942 protein-L-isoaspartat 99.0 2.8E-09 6E-14 107.9 12.0 110 231-355 62-176 (212)
73 TIGR00080 pimt protein-L-isoas 99.0 3E-09 6.6E-14 107.5 12.0 108 233-355 65-177 (215)
74 PRK13255 thiopurine S-methyltr 99.0 4.1E-09 8.9E-14 107.3 12.9 98 254-354 38-154 (218)
75 TIGR01983 UbiG ubiquinone bios 99.0 2.8E-09 6.2E-14 107.4 11.5 102 253-358 45-152 (224)
76 PF08003 Methyltransf_9: Prote 99.0 2.6E-09 5.6E-14 112.4 11.5 102 253-358 115-222 (315)
77 PLN03075 nicotianamine synthas 99.0 3.7E-09 8E-14 111.9 12.4 102 253-355 123-233 (296)
78 COG4976 Predicted methyltransf 99.0 2.8E-10 6E-15 114.5 3.3 102 253-358 125-228 (287)
79 PRK15001 SAM-dependent 23S rib 99.0 7.1E-09 1.5E-13 113.5 14.1 98 255-355 230-340 (378)
80 TIGR02716 C20_methyl_CrtF C-20 99.0 5.3E-09 1.1E-13 111.2 12.7 102 253-358 149-257 (306)
81 PRK08287 cobalt-precorrin-6Y C 98.9 1.1E-08 2.4E-13 101.0 13.6 97 254-357 32-133 (187)
82 PLN02232 ubiquinone biosynthes 98.9 2.4E-09 5.2E-14 103.7 8.5 77 282-359 1-85 (160)
83 TIGR03438 probable methyltrans 98.9 7.4E-09 1.6E-13 110.2 12.5 106 254-360 64-182 (301)
84 PRK14121 tRNA (guanine-N(7)-)- 98.9 6.6E-09 1.4E-13 113.7 12.0 101 254-356 123-236 (390)
85 PRK00517 prmA ribosomal protei 98.9 5.3E-09 1.1E-13 108.3 10.6 98 253-358 119-216 (250)
86 PF13659 Methyltransf_26: Meth 98.9 3.5E-09 7.6E-14 95.6 8.0 100 255-356 2-116 (117)
87 PLN02585 magnesium protoporphy 98.9 1.1E-08 2.4E-13 109.6 12.9 92 254-352 145-247 (315)
88 PRK14967 putative methyltransf 98.9 1.6E-08 3.5E-13 102.8 13.4 101 254-357 37-161 (223)
89 PRK04266 fibrillarin; Provisio 98.9 8.5E-09 1.8E-13 105.6 11.3 98 254-356 73-177 (226)
90 COG2813 RsmC 16S RNA G1207 met 98.9 1.9E-08 4.1E-13 106.0 14.0 131 216-356 127-267 (300)
91 PRK07580 Mg-protoporphyrin IX 98.9 1.3E-08 2.9E-13 102.8 12.2 94 253-352 63-163 (230)
92 cd02440 AdoMet_MTases S-adenos 98.9 1.2E-08 2.6E-13 86.8 9.9 96 256-354 1-103 (107)
93 KOG2361 Predicted methyltransf 98.9 8.4E-09 1.8E-13 104.8 10.0 134 227-366 51-194 (264)
94 PRK00377 cbiT cobalt-precorrin 98.9 1.9E-08 4.2E-13 100.4 12.6 100 253-356 40-146 (198)
95 COG2264 PrmA Ribosomal protein 98.8 1.5E-08 3.1E-13 107.2 11.2 100 253-358 162-266 (300)
96 PRK14968 putative methyltransf 98.8 6.1E-08 1.3E-12 94.6 14.6 100 254-357 24-150 (188)
97 PTZ00146 fibrillarin; Provisio 98.8 4E-08 8.7E-13 103.8 14.0 121 231-356 111-238 (293)
98 KOG3987 Uncharacterized conser 98.8 4.6E-10 9.9E-15 111.2 -0.6 199 214-432 77-277 (288)
99 TIGR00438 rrmJ cell division p 98.8 3E-08 6.4E-13 98.1 11.8 99 253-357 32-148 (188)
100 TIGR01177 conserved hypothetic 98.8 6E-08 1.3E-12 104.5 14.3 102 254-358 183-297 (329)
101 TIGR03534 RF_mod_PrmC protein- 98.8 5.4E-08 1.2E-12 99.5 13.0 101 254-356 88-218 (251)
102 KOG2940 Predicted methyltransf 98.8 8.7E-09 1.9E-13 103.7 6.4 111 254-367 73-186 (325)
103 PRK00312 pcm protein-L-isoaspa 98.8 7.2E-08 1.6E-12 97.1 12.8 93 254-356 79-176 (212)
104 PF06325 PrmA: Ribosomal prote 98.8 1.9E-08 4E-13 106.9 8.7 98 253-358 161-262 (295)
105 PRK07402 precorrin-6B methylas 98.7 7.9E-08 1.7E-12 95.7 12.0 98 254-357 41-144 (196)
106 PRK13256 thiopurine S-methyltr 98.7 1.6E-07 3.5E-12 96.1 12.9 100 254-356 44-164 (226)
107 TIGR03533 L3_gln_methyl protei 98.7 1.7E-07 3.7E-12 99.2 13.1 101 254-356 122-252 (284)
108 PRK10901 16S rRNA methyltransf 98.7 1.2E-07 2.5E-12 105.9 12.4 106 253-359 244-376 (427)
109 KOG1271 Methyltransferases [Ge 98.7 9.1E-08 2E-12 93.6 9.7 103 254-357 68-183 (227)
110 TIGR00563 rsmB ribosomal RNA s 98.7 2E-07 4.3E-12 104.0 13.3 106 254-360 239-373 (426)
111 PRK13943 protein-L-isoaspartat 98.7 1.9E-07 4.1E-12 100.5 12.5 96 254-356 81-181 (322)
112 smart00650 rADc Ribosomal RNA 98.6 1.3E-07 2.9E-12 92.0 10.0 95 254-355 14-113 (169)
113 PRK09328 N5-glutamine S-adenos 98.6 2.1E-07 4.5E-12 96.9 11.6 100 254-355 109-238 (275)
114 PF03291 Pox_MCEL: mRNA cappin 98.6 9.9E-08 2.1E-12 103.0 9.3 103 253-357 62-188 (331)
115 PF06080 DUF938: Protein of un 98.6 2.2E-07 4.8E-12 93.3 11.0 142 256-399 28-204 (204)
116 PRK14901 16S rRNA methyltransf 98.6 2.7E-07 5.9E-12 103.2 12.9 108 253-360 252-389 (434)
117 PRK00811 spermidine synthase; 98.6 2.6E-07 5.7E-12 97.7 12.1 102 253-356 76-192 (283)
118 PF05148 Methyltransf_8: Hypot 98.6 1.9E-07 4.2E-12 93.7 10.4 112 254-391 73-184 (219)
119 PRK14966 unknown domain/N5-glu 98.6 6.6E-07 1.4E-11 98.8 14.8 101 255-356 253-382 (423)
120 PHA03411 putative methyltransf 98.6 3.3E-07 7.1E-12 96.1 11.1 99 254-354 65-182 (279)
121 PF01135 PCMT: Protein-L-isoas 98.6 1.3E-07 2.8E-12 95.9 7.8 111 231-356 58-173 (209)
122 TIGR00536 hemK_fam HemK family 98.6 3.2E-07 7E-12 96.9 11.1 100 255-356 116-245 (284)
123 PRK11805 N5-glutamine S-adenos 98.6 3.1E-07 6.6E-12 98.3 11.0 100 255-356 135-264 (307)
124 PRK14904 16S rRNA methyltransf 98.6 2.8E-07 6.1E-12 103.3 11.2 107 253-360 250-382 (445)
125 PRK04457 spermidine synthase; 98.6 3.9E-07 8.5E-12 95.3 11.5 103 253-356 66-178 (262)
126 COG4123 Predicted O-methyltran 98.6 3E-07 6.4E-12 95.1 10.3 103 254-357 45-172 (248)
127 PRK14903 16S rRNA methyltransf 98.5 6.1E-07 1.3E-11 100.3 12.4 107 254-360 238-371 (431)
128 PF00891 Methyltransf_2: O-met 98.5 5.2E-07 1.1E-11 92.5 10.4 102 253-360 100-204 (241)
129 PRK01581 speE spermidine synth 98.5 6.9E-07 1.5E-11 97.0 11.6 102 253-356 150-269 (374)
130 TIGR00446 nop2p NOL1/NOP2/sun 98.5 9.3E-07 2E-11 92.5 12.1 108 253-360 71-204 (264)
131 COG2518 Pcm Protein-L-isoaspar 98.5 1.3E-06 2.9E-11 88.0 12.2 108 231-356 58-170 (209)
132 PF08241 Methyltransf_11: Meth 98.5 3.7E-08 8E-13 84.5 0.6 91 520-620 1-95 (95)
133 KOG3045 Predicted RNA methylas 98.4 1.1E-06 2.3E-11 90.3 10.1 110 254-391 181-290 (325)
134 PRK14902 16S rRNA methyltransf 98.4 1E-06 2.3E-11 98.7 11.0 105 254-359 251-383 (444)
135 TIGR00417 speE spermidine synt 98.4 1.8E-06 3.9E-11 90.6 11.8 102 253-356 72-187 (270)
136 KOG1975 mRNA cap methyltransfe 98.4 1.1E-06 2.3E-11 92.9 9.6 103 253-358 117-240 (389)
137 PHA03412 putative methyltransf 98.4 1.7E-06 3.8E-11 88.9 10.5 96 254-350 50-158 (241)
138 COG2242 CobL Precorrin-6B meth 98.4 3.8E-06 8.3E-11 83.1 12.5 99 253-358 34-138 (187)
139 TIGR03704 PrmC_rel_meth putati 98.4 2.1E-06 4.5E-11 89.4 10.9 101 255-356 88-217 (251)
140 PF05891 Methyltransf_PK: AdoM 98.4 1.3E-06 2.7E-11 88.5 8.8 136 253-390 55-199 (218)
141 PRK03612 spermidine synthase; 98.3 2.6E-06 5.7E-11 97.4 11.7 103 253-357 297-417 (521)
142 PF05724 TPMT: Thiopurine S-me 98.3 2.7E-06 5.9E-11 86.8 10.6 98 254-354 38-154 (218)
143 PLN02781 Probable caffeoyl-CoA 98.3 3.6E-06 7.9E-11 86.7 11.5 99 254-356 69-179 (234)
144 PLN02366 spermidine synthase 98.3 3.7E-06 8.1E-11 90.0 12.0 102 253-356 91-207 (308)
145 PF02390 Methyltransf_4: Putat 98.3 1.8E-06 3.8E-11 86.7 9.0 100 255-356 19-134 (195)
146 COG0220 Predicted S-adenosylme 98.3 1.8E-06 3.8E-11 88.7 8.9 101 255-357 50-166 (227)
147 COG2519 GCD14 tRNA(1-methylade 98.3 8.2E-06 1.8E-10 84.2 12.1 110 236-360 85-200 (256)
148 COG0500 SmtA SAM-dependent met 98.3 9.2E-06 2E-10 71.4 11.0 101 257-360 52-160 (257)
149 PRK13168 rumA 23S rRNA m(5)U19 98.2 8.3E-06 1.8E-10 91.5 12.5 95 254-356 298-401 (443)
150 PF01739 CheR: CheR methyltran 98.2 7.3E-06 1.6E-10 82.4 10.7 103 253-355 31-175 (196)
151 KOG2899 Predicted methyltransf 98.2 5.5E-06 1.2E-10 84.6 9.1 101 253-354 58-208 (288)
152 PRK11783 rlmL 23S rRNA m(2)G24 98.2 4.8E-06 1E-10 98.5 9.1 101 254-356 539-657 (702)
153 COG2890 HemK Methylase of poly 98.2 8.8E-06 1.9E-10 86.1 10.0 98 256-356 113-239 (280)
154 COG3963 Phospholipid N-methylt 98.1 1.7E-05 3.7E-10 77.0 10.9 106 253-358 48-159 (194)
155 PRK15128 23S rRNA m(5)C1962 me 98.1 1E-05 2.2E-10 89.6 9.5 101 254-356 221-340 (396)
156 PRK10611 chemotaxis methyltran 98.1 2.4E-05 5.2E-10 83.0 11.7 101 255-355 117-262 (287)
157 PRK00274 ksgA 16S ribosomal RN 98.1 1.1E-05 2.3E-10 85.0 8.9 84 232-326 29-114 (272)
158 PRK03522 rumB 23S rRNA methylu 98.1 2.1E-05 4.7E-10 84.3 11.3 98 254-358 174-277 (315)
159 PF13489 Methyltransf_23: Meth 98.0 1.4E-06 3E-11 82.3 1.1 93 516-624 23-117 (161)
160 TIGR00478 tly hemolysin TlyA f 98.0 1.9E-05 4.1E-10 81.2 8.9 91 253-355 75-171 (228)
161 PRK14896 ksgA 16S ribosomal RN 98.0 2.3E-05 4.9E-10 81.8 9.6 83 231-326 15-100 (258)
162 TIGR00479 rumA 23S rRNA (uraci 98.0 3.3E-05 7.1E-10 86.3 10.9 96 254-356 293-397 (431)
163 PF10294 Methyltransf_16: Puta 98.0 3.3E-05 7.2E-10 75.9 9.0 101 253-356 45-157 (173)
164 PRK10909 rsmD 16S rRNA m(2)G96 97.9 0.00011 2.5E-09 74.0 13.1 99 254-356 54-160 (199)
165 PRK00107 gidB 16S rRNA methylt 97.9 2.9E-05 6.3E-10 77.5 7.8 130 517-660 47-187 (187)
166 TIGR00755 ksgA dimethyladenosi 97.9 9.2E-05 2E-09 76.9 11.7 68 254-326 30-103 (253)
167 PF01596 Methyltransf_3: O-met 97.9 5.9E-05 1.3E-09 76.4 9.7 100 254-357 46-157 (205)
168 PRK11207 tellurite resistance 97.8 9.5E-06 2.1E-10 81.2 3.2 94 517-620 32-132 (197)
169 PLN02476 O-methyltransferase 97.8 0.00012 2.7E-09 77.3 11.6 100 253-356 118-229 (278)
170 PF08704 GCD14: tRNA methyltra 97.8 8.6E-05 1.9E-09 77.2 10.3 110 236-359 31-150 (247)
171 COG1352 CheR Methylase of chem 97.8 9.5E-05 2E-09 77.7 10.6 103 253-355 96-241 (268)
172 PRK12335 tellurite resistance 97.8 1.3E-05 2.8E-10 84.8 4.2 115 518-645 123-258 (287)
173 PF05185 PRMT5: PRMT5 arginine 97.8 6.6E-05 1.4E-09 84.4 9.8 97 254-352 187-294 (448)
174 TIGR00477 tehB tellurite resis 97.8 1.5E-05 3.2E-10 79.7 4.2 93 517-620 32-131 (195)
175 PRK11727 23S rRNA mA1618 methy 97.8 0.00018 4E-09 77.5 12.5 97 229-326 90-198 (321)
176 PRK01544 bifunctional N5-gluta 97.8 5.9E-05 1.3E-09 86.1 9.2 103 252-356 346-463 (506)
177 PLN02244 tocopherol O-methyltr 97.8 1.2E-05 2.7E-10 87.1 3.6 95 516-622 119-223 (340)
178 PRK04148 hypothetical protein; 97.8 0.00012 2.5E-09 69.3 9.4 92 254-356 17-110 (134)
179 KOG1331 Predicted methyltransf 97.8 1.7E-05 3.7E-10 82.9 4.1 99 254-358 46-146 (293)
180 COG4122 Predicted O-methyltran 97.8 0.00016 3.4E-09 73.9 11.0 100 253-356 59-167 (219)
181 PLN02672 methionine S-methyltr 97.8 5.9E-05 1.3E-09 92.1 9.3 101 254-356 119-279 (1082)
182 TIGR02085 meth_trns_rumB 23S r 97.8 0.00014 3.1E-09 80.0 11.5 95 255-356 235-335 (374)
183 KOG2904 Predicted methyltransf 97.8 0.00021 4.5E-09 74.5 11.7 121 231-358 131-288 (328)
184 TIGR02752 MenG_heptapren 2-hep 97.8 5.1E-05 1.1E-09 77.0 7.0 97 517-623 47-152 (231)
185 KOG1499 Protein arginine N-met 97.8 6.3E-05 1.4E-09 80.8 7.9 97 253-352 60-164 (346)
186 PLN02233 ubiquinone biosynthes 97.8 2E-05 4.2E-10 82.5 3.9 98 517-622 75-182 (261)
187 KOG1661 Protein-L-isoaspartate 97.8 0.00012 2.5E-09 73.7 9.1 94 255-355 84-193 (237)
188 smart00828 PKS_MT Methyltransf 97.7 2.3E-05 5E-10 79.2 3.9 96 517-623 1-105 (224)
189 PF12847 Methyltransf_18: Meth 97.7 1.1E-05 2.4E-10 72.1 0.8 97 518-622 4-111 (112)
190 PLN02823 spermine synthase 97.7 0.00029 6.3E-09 76.5 11.8 101 253-355 103-220 (336)
191 PTZ00338 dimethyladenosine tra 97.7 0.00014 2.9E-09 77.7 8.7 86 232-331 23-114 (294)
192 KOG1269 SAM-dependent methyltr 97.7 7.7E-05 1.7E-09 81.6 6.9 100 255-357 112-217 (364)
193 PRK10258 biotin biosynthesis p 97.7 4.6E-05 9.9E-10 78.6 4.8 94 516-621 43-139 (251)
194 PF07942 N2227: N2227-like pro 97.6 0.00044 9.6E-09 72.7 11.9 136 253-392 56-242 (270)
195 TIGR00537 hemK_rel_arch HemK-r 97.6 0.0001 2.2E-09 72.3 6.6 132 517-656 21-175 (179)
196 COG2263 Predicted RNA methylas 97.6 0.00028 6.1E-09 70.1 9.2 68 253-325 45-116 (198)
197 PRK14103 trans-aconitate 2-met 97.6 4E-05 8.6E-10 79.5 3.5 94 517-621 31-125 (255)
198 PRK15068 tRNA mo(5)U34 methylt 97.6 3.8E-05 8.3E-10 82.8 3.4 96 517-621 124-225 (322)
199 COG1041 Predicted DNA modifica 97.6 0.00034 7.4E-09 75.5 10.5 115 231-356 183-311 (347)
200 PRK11036 putative S-adenosyl-L 97.6 2.4E-05 5.3E-10 81.1 1.5 94 517-621 46-148 (255)
201 COG2521 Predicted archaeal met 97.6 0.00022 4.8E-09 72.8 8.2 147 231-390 118-275 (287)
202 KOG3191 Predicted N6-DNA-methy 97.6 0.00056 1.2E-08 67.6 10.5 106 253-359 43-172 (209)
203 TIGR00138 gidB 16S rRNA methyl 97.6 5.4E-05 1.2E-09 75.0 3.5 116 517-647 44-168 (181)
204 PTZ00098 phosphoethanolamine N 97.6 3.5E-05 7.6E-10 80.7 2.2 97 517-623 54-157 (263)
205 PF02353 CMAS: Mycolic acid cy 97.5 3.3E-05 7.1E-10 81.5 1.2 97 518-621 65-165 (273)
206 PRK11088 rrmA 23S rRNA methylt 97.5 0.00014 2.9E-09 76.4 5.5 91 517-622 87-181 (272)
207 PRK08317 hypothetical protein; 97.5 0.00012 2.7E-09 73.5 5.0 97 517-622 21-124 (241)
208 PLN02589 caffeoyl-CoA O-methyl 97.5 0.00048 1E-08 71.8 9.2 98 254-355 80-190 (247)
209 TIGR00095 RNA methyltransferas 97.5 0.0021 4.5E-08 64.2 13.4 99 254-356 50-160 (189)
210 PF01170 UPF0020: Putative RNA 97.4 0.00068 1.5E-08 67.1 9.7 100 254-354 29-150 (179)
211 PRK08287 cobalt-precorrin-6Y C 97.4 0.00016 3.5E-09 71.4 5.1 111 517-640 33-150 (187)
212 TIGR00406 prmA ribosomal prote 97.4 0.00016 3.4E-09 76.7 5.2 114 517-644 161-281 (288)
213 PRK00536 speE spermidine synth 97.4 0.0014 3.1E-08 68.8 11.9 94 253-358 72-174 (262)
214 PRK00517 prmA ribosomal protei 97.4 0.00037 7.9E-09 72.4 7.5 110 517-644 121-236 (250)
215 PRK00121 trmB tRNA (guanine-N( 97.4 0.00016 3.5E-09 72.7 4.6 125 516-644 41-179 (202)
216 KOG2352 Predicted spermine/spe 97.4 0.001 2.2E-08 74.3 11.2 99 256-356 51-162 (482)
217 PRK11705 cyclopropane fatty ac 97.4 9.5E-05 2.1E-09 81.6 3.1 95 517-621 169-266 (383)
218 PRK11933 yebU rRNA (cytosine-C 97.4 0.0016 3.4E-08 73.8 12.6 108 253-360 113-247 (470)
219 TIGR02072 BioC biotin biosynth 97.4 9.9E-05 2.1E-09 74.3 2.7 96 517-622 36-135 (240)
220 PLN02396 hexaprenyldihydroxybe 97.3 9.8E-05 2.1E-09 79.7 2.4 95 517-622 133-235 (322)
221 PRK09328 N5-glutamine S-adenos 97.3 0.00059 1.3E-08 71.1 7.9 138 517-659 110-275 (275)
222 TIGR00452 methyltransferase, p 97.3 0.00014 3E-09 78.3 3.2 97 517-621 123-224 (314)
223 PTZ00146 fibrillarin; Provisio 97.3 0.0007 1.5E-08 72.0 8.5 103 509-621 128-236 (293)
224 PF01728 FtsJ: FtsJ-like methy 97.3 0.00043 9.4E-09 67.9 6.3 99 253-358 23-142 (181)
225 PRK04338 N(2),N(2)-dimethylgua 97.3 0.0015 3.2E-08 72.3 10.8 95 255-355 59-158 (382)
226 PF02527 GidB: rRNA small subu 97.3 0.0023 4.9E-08 63.9 11.1 93 256-355 51-148 (184)
227 PF09243 Rsm22: Mitochondrial 97.3 0.0019 4.1E-08 68.3 11.1 105 252-360 32-144 (274)
228 TIGR00438 rrmJ cell division p 97.2 0.00053 1.2E-08 67.8 6.3 128 517-658 34-186 (188)
229 PRK01683 trans-aconitate 2-met 97.2 0.00049 1.1E-08 71.2 6.1 112 516-641 32-153 (258)
230 PF11968 DUF3321: Putative met 97.2 0.0015 3.3E-08 66.3 9.4 117 255-391 53-180 (219)
231 TIGR03534 RF_mod_PrmC protein- 97.2 0.0005 1.1E-08 70.4 6.0 134 517-655 89-250 (251)
232 KOG1500 Protein arginine N-met 97.2 0.0011 2.5E-08 70.6 8.6 98 252-353 176-280 (517)
233 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.2 0.0012 2.7E-08 69.0 8.8 104 253-358 56-202 (256)
234 KOG3178 Hydroxyindole-O-methyl 97.2 0.0014 3E-08 70.7 9.3 102 253-360 177-280 (342)
235 PF08242 Methyltransf_12: Meth 97.2 0.0002 4.3E-09 62.9 2.4 90 520-618 1-99 (99)
236 PF12147 Methyltransf_20: Puta 97.2 0.0048 1E-07 65.3 12.9 137 253-390 135-296 (311)
237 KOG0820 Ribosomal RNA adenine 97.2 0.0017 3.7E-08 67.8 9.2 83 231-326 44-132 (315)
238 TIGR01934 MenG_MenH_UbiE ubiqu 97.2 0.0007 1.5E-08 67.6 6.2 97 517-622 41-143 (223)
239 PF05401 NodS: Nodulation prot 97.1 0.00018 3.9E-09 72.0 1.6 136 513-657 41-192 (201)
240 PRK14968 putative methyltransf 97.1 0.00094 2E-08 65.0 6.4 122 517-645 25-172 (188)
241 TIGR03439 methyl_EasF probable 97.1 0.004 8.6E-08 67.3 11.7 103 254-356 77-198 (319)
242 TIGR00740 methyltransferase, p 97.1 0.00052 1.1E-08 70.4 4.3 98 517-623 55-162 (239)
243 PF01564 Spermine_synth: Sperm 97.1 0.0027 5.8E-08 66.1 9.5 102 253-356 76-192 (246)
244 COG0030 KsgA Dimethyladenosine 97.1 0.0024 5.3E-08 66.8 9.1 83 233-326 18-104 (259)
245 COG0421 SpeE Spermidine syntha 97.1 0.0037 8E-08 66.4 10.6 102 253-356 76-191 (282)
246 COG2226 UbiE Methylase involve 97.0 0.00044 9.5E-09 71.6 3.2 96 517-621 53-155 (238)
247 PF01209 Ubie_methyltran: ubiE 97.0 0.00038 8.3E-09 71.8 2.5 96 518-621 50-152 (233)
248 PRK15001 SAM-dependent 23S rib 97.0 0.012 2.6E-07 65.0 14.0 111 517-633 230-353 (378)
249 PF02384 N6_Mtase: N-6 DNA Met 96.9 0.003 6.5E-08 67.3 8.6 118 231-356 32-184 (311)
250 PRK05031 tRNA (uracil-5-)-meth 96.9 0.0047 1E-07 67.8 10.1 93 255-356 208-321 (362)
251 TIGR02143 trmA_only tRNA (urac 96.9 0.0047 1E-07 67.6 9.9 93 255-356 199-312 (353)
252 TIGR00536 hemK_fam HemK family 96.9 0.0021 4.6E-08 68.0 6.8 138 517-659 116-282 (284)
253 PF02475 Met_10: Met-10+ like- 96.8 0.003 6.6E-08 63.8 7.5 92 254-352 102-199 (200)
254 PRK11188 rrmJ 23S rRNA methylt 96.8 0.003 6.6E-08 64.0 7.4 92 517-621 53-164 (209)
255 PRK05785 hypothetical protein; 96.8 0.00083 1.8E-08 68.8 3.3 88 517-616 53-141 (226)
256 KOG3201 Uncharacterized conser 96.8 0.0006 1.3E-08 66.1 2.0 136 254-401 30-176 (201)
257 PLN02490 MPBQ/MSBQ methyltrans 96.8 0.0025 5.5E-08 69.3 7.0 119 517-644 115-254 (340)
258 PRK11873 arsM arsenite S-adeno 96.8 0.00083 1.8E-08 70.2 3.1 97 517-622 79-183 (272)
259 PRK00377 cbiT cobalt-precorrin 96.8 0.0017 3.6E-08 64.9 5.1 148 468-645 9-169 (198)
260 TIGR01983 UbiG ubiquinone bios 96.8 0.00067 1.5E-08 68.3 2.3 95 517-622 47-149 (224)
261 PRK15451 tRNA cmo(5)U34 methyl 96.8 0.0006 1.3E-08 70.6 1.8 100 517-622 58-164 (247)
262 PRK00216 ubiE ubiquinone/menaq 96.7 0.0031 6.8E-08 63.6 6.4 97 517-622 53-158 (239)
263 smart00138 MeTrc Methyltransfe 96.7 0.0021 4.6E-08 67.4 5.3 135 470-625 69-245 (264)
264 PRK05134 bifunctional 3-demeth 96.7 0.0011 2.3E-08 67.6 2.7 94 518-622 51-151 (233)
265 PF03602 Cons_hypoth95: Conser 96.6 0.0057 1.2E-07 60.9 7.7 100 254-356 43-154 (183)
266 PRK14121 tRNA (guanine-N(7)-)- 96.6 0.0022 4.8E-08 70.8 5.0 119 517-641 124-256 (390)
267 PRK06922 hypothetical protein; 96.6 0.00076 1.7E-08 78.4 1.5 104 517-623 420-538 (677)
268 PF03848 TehB: Tellurite resis 96.6 0.00076 1.6E-08 67.7 1.3 122 518-645 33-168 (192)
269 PRK14966 unknown domain/N5-glu 96.6 0.0062 1.3E-07 67.9 8.5 139 518-660 254-419 (423)
270 KOG3420 Predicted RNA methylas 96.6 0.0041 8.8E-08 59.5 6.0 72 253-326 48-123 (185)
271 TIGR00091 tRNA (guanine-N(7)-) 96.6 0.0023 5E-08 63.8 4.6 122 517-642 18-154 (194)
272 PRK00050 16S rRNA m(4)C1402 me 96.6 0.0055 1.2E-07 65.5 7.5 56 234-297 8-63 (296)
273 PRK11760 putative 23S rRNA C24 96.5 0.011 2.4E-07 64.2 9.4 93 253-355 211-305 (357)
274 PF13847 Methyltransf_31: Meth 96.5 0.0016 3.6E-08 61.9 2.8 98 517-624 5-112 (152)
275 PF08123 DOT1: Histone methyla 96.5 0.0066 1.4E-07 61.6 7.3 120 225-355 21-158 (205)
276 TIGR02716 C20_methyl_CrtF C-20 96.5 0.0018 3.8E-08 69.1 3.2 101 514-622 148-254 (306)
277 PRK04266 fibrillarin; Provisio 96.5 0.007 1.5E-07 62.2 7.4 91 518-620 75-174 (226)
278 TIGR02987 met_A_Alw26 type II 96.5 0.024 5.1E-07 65.2 12.3 72 254-325 32-120 (524)
279 PRK14967 putative methyltransf 96.4 0.0035 7.6E-08 63.8 4.7 122 517-644 38-182 (223)
280 PF05148 Methyltransf_8: Hypot 96.4 0.0031 6.8E-08 63.9 4.2 109 516-645 73-184 (219)
281 TIGR03704 PrmC_rel_meth putati 96.4 0.0051 1.1E-07 64.1 5.9 130 517-649 88-243 (251)
282 COG1092 Predicted SAM-dependen 96.4 0.016 3.4E-07 64.3 10.0 103 254-358 218-339 (393)
283 PF00398 RrnaAD: Ribosomal RNA 96.4 0.026 5.6E-07 59.1 11.0 103 230-347 15-123 (262)
284 cd02440 AdoMet_MTases S-adenos 96.3 0.0017 3.8E-08 54.7 1.6 95 518-621 1-103 (107)
285 PF00891 Methyltransf_2: O-met 96.3 0.0013 2.8E-08 67.5 0.9 100 512-622 97-199 (241)
286 PRK13944 protein-L-isoaspartat 96.3 0.0028 6E-08 63.9 3.2 88 517-621 74-172 (205)
287 PRK06202 hypothetical protein; 96.2 0.0028 6.1E-08 64.7 2.8 101 516-622 61-166 (232)
288 KOG3010 Methyltransferase [Gen 96.2 0.0021 4.6E-08 66.1 1.8 113 515-640 33-158 (261)
289 TIGR02469 CbiT precorrin-6Y C5 96.2 0.0043 9.3E-08 55.9 3.6 91 517-621 21-121 (124)
290 COG4627 Uncharacterized protei 96.2 0.0015 3.2E-08 63.1 0.5 55 307-361 37-92 (185)
291 TIGR00080 pimt protein-L-isoas 96.2 0.0036 7.7E-08 63.4 3.3 88 517-621 79-176 (215)
292 TIGR00308 TRM1 tRNA(guanine-26 96.2 0.015 3.3E-07 64.1 8.3 96 255-355 46-147 (374)
293 PF10672 Methyltrans_SAM: S-ad 96.1 0.012 2.6E-07 62.6 7.1 103 254-358 124-241 (286)
294 PRK09489 rsmC 16S ribosomal RN 96.1 0.0036 7.8E-08 68.3 3.2 101 518-623 199-304 (342)
295 KOG3045 Predicted RNA methylas 96.1 0.0052 1.1E-07 63.8 3.8 106 517-645 182-290 (325)
296 TIGR02081 metW methionine bios 96.0 0.0046 1E-07 61.5 3.2 87 518-614 16-104 (194)
297 COG1189 Predicted rRNA methyla 96.0 0.055 1.2E-06 55.9 10.9 129 253-388 79-220 (245)
298 COG0357 GidB Predicted S-adeno 96.0 0.021 4.5E-07 58.4 7.7 95 254-354 68-167 (215)
299 COG0293 FtsJ 23S rRNA methylas 96.0 0.032 6.9E-07 56.6 8.9 100 253-358 45-162 (205)
300 COG2890 HemK Methylase of poly 96.0 0.024 5.2E-07 60.2 8.4 137 518-659 113-276 (280)
301 PRK04457 spermidine synthase; 96.0 0.016 3.5E-07 60.9 7.0 138 516-659 67-216 (262)
302 PRK07580 Mg-protoporphyrin IX 95.9 0.0058 1.2E-07 61.7 3.4 99 516-623 64-167 (230)
303 PF13679 Methyltransf_32: Meth 95.9 0.021 4.6E-07 54.1 7.0 97 253-359 25-135 (141)
304 COG4976 Predicted methyltransf 95.9 0.0016 3.5E-08 66.5 -0.8 137 513-660 123-286 (287)
305 TIGR03587 Pse_Me-ase pseudamin 95.9 0.0052 1.1E-07 62.1 2.9 95 516-621 44-141 (204)
306 PF07021 MetW: Methionine bios 95.9 0.0052 1.1E-07 61.5 2.7 116 517-644 15-165 (193)
307 TIGR03533 L3_gln_methyl protei 95.9 0.016 3.5E-07 61.5 6.6 119 517-641 123-269 (284)
308 PF01269 Fibrillarin: Fibrilla 95.9 0.056 1.2E-06 55.4 10.0 120 231-356 52-179 (229)
309 COG2520 Predicted methyltransf 95.9 0.075 1.6E-06 57.9 11.7 100 254-360 189-294 (341)
310 PRK11783 rlmL 23S rRNA m(2)G24 95.8 0.069 1.5E-06 63.7 12.2 126 517-646 540-680 (702)
311 PRK13942 protein-L-isoaspartat 95.8 0.0085 1.9E-07 60.7 3.9 89 517-621 78-175 (212)
312 KOG1709 Guanidinoacetate methy 95.8 0.063 1.4E-06 54.7 9.8 114 230-355 87-206 (271)
313 PF03059 NAS: Nicotianamine sy 95.8 0.074 1.6E-06 56.4 10.8 103 253-356 120-231 (276)
314 COG2230 Cfa Cyclopropane fatty 95.7 0.0071 1.5E-07 64.1 3.2 95 518-621 75-175 (283)
315 PF06325 PrmA: Ribosomal prote 95.7 0.0069 1.5E-07 64.8 3.0 115 517-644 163-281 (295)
316 PRK11805 N5-glutamine S-adenos 95.7 0.017 3.8E-07 62.0 6.1 115 517-637 135-277 (307)
317 COG2265 TrmA SAM-dependent met 95.6 0.068 1.5E-06 60.2 10.6 97 254-357 294-398 (432)
318 TIGR02021 BchM-ChlM magnesium 95.6 0.0084 1.8E-07 60.6 3.1 99 516-623 56-159 (219)
319 KOG1663 O-methyltransferase [S 95.6 0.11 2.4E-06 53.4 11.1 98 254-355 74-183 (237)
320 PF13578 Methyltransf_24: Meth 95.5 0.0045 9.7E-08 55.2 0.7 96 258-355 1-105 (106)
321 COG0144 Sun tRNA and rRNA cyto 95.5 0.087 1.9E-06 57.9 10.5 108 253-360 156-293 (355)
322 COG0742 N6-adenine-specific me 95.5 0.18 4E-06 50.5 11.8 102 253-357 43-156 (187)
323 PF13649 Methyltransf_25: Meth 95.3 0.0019 4.1E-08 57.1 -2.5 93 519-616 1-101 (101)
324 PF05175 MTS: Methyltransferas 95.3 0.0082 1.8E-07 58.6 1.6 114 516-635 32-155 (170)
325 PF01728 FtsJ: FtsJ-like methy 95.1 0.012 2.7E-07 57.6 2.4 142 512-659 20-180 (181)
326 PRK07402 precorrin-6B methylas 95.1 0.047 1E-06 54.3 6.4 109 517-638 42-159 (196)
327 PF02390 Methyltransf_4: Putat 94.9 0.029 6.2E-07 56.4 4.3 124 518-642 20-156 (195)
328 KOG2915 tRNA(1-methyladenosine 94.8 0.23 5.1E-06 52.3 10.5 111 234-358 94-213 (314)
329 KOG2798 Putative trehalase [Ca 94.8 0.12 2.6E-06 55.4 8.5 135 253-391 150-336 (369)
330 PF08003 Methyltransf_9: Prote 94.7 0.028 6.1E-07 60.1 3.9 97 516-621 116-218 (315)
331 TIGR03438 probable methyltrans 94.7 0.014 3.1E-07 62.3 1.8 98 517-621 65-176 (301)
332 PRK00312 pcm protein-L-isoaspa 94.7 0.025 5.3E-07 57.0 3.3 87 517-621 80-174 (212)
333 PLN02668 indole-3-acetate carb 94.7 0.11 2.3E-06 57.6 8.4 46 313-359 158-241 (386)
334 TIGR03840 TMPT_Se_Te thiopurin 94.6 0.023 5E-07 57.9 2.9 97 517-620 36-150 (213)
335 PF04672 Methyltransf_19: S-ad 94.5 0.18 3.8E-06 53.2 9.1 105 253-359 68-194 (267)
336 COG2227 UbiG 2-polyprenyl-3-me 94.5 0.029 6.2E-07 58.0 3.2 95 518-623 62-162 (243)
337 COG4076 Predicted RNA methylas 94.4 0.096 2.1E-06 52.4 6.6 94 255-353 34-133 (252)
338 PF04816 DUF633: Family of unk 94.4 0.31 6.6E-06 49.6 10.3 115 257-390 1-122 (205)
339 PF05958 tRNA_U5-meth_tr: tRNA 94.3 0.11 2.4E-06 56.9 7.4 53 255-310 198-255 (352)
340 TIGR01444 fkbM_fam methyltrans 94.2 0.069 1.5E-06 49.8 4.9 41 256-297 1-41 (143)
341 PF01189 Nol1_Nop2_Fmu: NOL1/N 94.2 0.071 1.5E-06 56.7 5.6 105 253-357 85-221 (283)
342 COG4798 Predicted methyltransf 94.1 0.2 4.3E-06 50.4 8.0 136 253-390 48-203 (238)
343 PF13659 Methyltransf_26: Meth 94.0 0.012 2.6E-07 52.9 -0.6 97 518-620 3-113 (117)
344 COG3897 Predicted methyltransf 94.0 0.15 3.3E-06 51.3 7.1 101 253-360 79-184 (218)
345 COG4123 Predicted O-methyltran 93.9 0.13 2.9E-06 53.6 6.7 126 516-643 45-191 (248)
346 PF09445 Methyltransf_15: RNA 93.8 0.071 1.5E-06 52.3 4.2 67 255-324 1-76 (163)
347 COG5459 Predicted rRNA methyla 93.7 0.15 3.2E-06 55.4 6.7 109 252-360 112-230 (484)
348 COG0116 Predicted N6-adenine-s 93.7 0.63 1.4E-05 51.4 11.7 127 226-356 168-345 (381)
349 PLN02781 Probable caffeoyl-CoA 93.7 0.04 8.8E-07 56.8 2.4 132 515-660 68-233 (234)
350 PRK13255 thiopurine S-methyltr 93.6 0.034 7.4E-07 56.9 1.7 95 518-620 40-153 (218)
351 TIGR00563 rsmB ribosomal RNA s 93.6 0.11 2.4E-06 58.3 5.9 102 517-621 240-367 (426)
352 COG4262 Predicted spermidine s 93.6 0.36 7.8E-06 52.8 9.3 104 253-358 289-410 (508)
353 COG2264 PrmA Ribosomal protein 93.4 0.12 2.6E-06 55.3 5.6 117 515-645 162-287 (300)
354 PF05219 DREV: DREV methyltran 93.3 0.067 1.4E-06 56.0 3.3 90 515-621 94-187 (265)
355 KOG3115 Methyltransferase-like 93.3 0.23 5E-06 50.3 6.8 41 255-296 62-102 (249)
356 KOG1540 Ubiquinone biosynthesi 93.2 0.11 2.3E-06 54.4 4.5 95 517-622 102-214 (296)
357 TIGR01177 conserved hypothetic 93.1 0.063 1.4E-06 58.1 2.9 114 518-639 185-309 (329)
358 TIGR00478 tly hemolysin TlyA f 93.1 0.09 1.9E-06 54.3 3.8 109 516-644 76-215 (228)
359 PRK14902 16S rRNA methyltransf 92.6 0.1 2.2E-06 58.8 3.7 103 517-621 252-378 (444)
360 COG0500 SmtA SAM-dependent met 92.3 0.18 4E-06 43.8 4.3 94 519-624 52-157 (257)
361 PRK10901 16S rRNA methyltransf 91.8 0.28 6E-06 55.1 6.0 103 517-622 246-372 (427)
362 TIGR00446 nop2p NOL1/NOP2/sun 91.4 0.25 5.4E-06 51.8 4.8 101 518-621 74-198 (264)
363 COG1064 AdhP Zn-dependent alco 91.4 0.74 1.6E-05 50.3 8.5 95 253-357 166-261 (339)
364 PF06080 DUF938: Protein of un 91.2 0.42 9.1E-06 48.6 5.9 134 518-659 28-204 (204)
365 PF07091 FmrO: Ribosomal RNA m 90.5 1.7 3.7E-05 45.5 9.7 128 253-387 105-239 (251)
366 COG0220 Predicted S-adenosylme 90.3 0.38 8.2E-06 49.7 4.8 118 517-636 50-180 (227)
367 PRK13943 protein-L-isoaspartat 90.3 0.21 4.6E-06 54.2 3.0 90 517-622 82-180 (322)
368 PRK14903 16S rRNA methyltransf 90.2 0.35 7.5E-06 54.5 4.8 101 518-621 240-365 (431)
369 PLN03075 nicotianamine synthas 90.1 0.34 7.3E-06 52.0 4.3 136 515-661 123-276 (296)
370 PRK14904 16S rRNA methyltransf 89.9 0.47 1E-05 53.6 5.6 113 517-635 252-394 (445)
371 KOG1122 tRNA and rRNA cytosine 89.8 1.5 3.3E-05 48.9 9.0 111 248-359 236-375 (460)
372 PF04989 CmcI: Cephalosporin h 89.5 0.7 1.5E-05 47.1 5.9 104 253-358 32-150 (206)
373 PF06962 rRNA_methylase: Putat 88.9 2 4.3E-05 41.2 8.2 81 280-360 1-97 (140)
374 KOG2361 Predicted methyltransf 88.9 0.3 6.5E-06 50.7 2.8 99 518-623 74-184 (264)
375 KOG0822 Protein kinase inhibit 88.8 0.87 1.9E-05 52.0 6.5 132 219-355 337-478 (649)
376 KOG2187 tRNA uracil-5-methyltr 88.7 0.53 1.1E-05 53.6 4.7 69 231-310 369-442 (534)
377 PLN02232 ubiquinone biosynthes 88.7 0.21 4.6E-06 48.3 1.5 47 570-622 35-81 (160)
378 cd08283 FDH_like_1 Glutathione 88.6 2.4 5.2E-05 46.6 9.8 101 254-356 185-307 (386)
379 KOG1271 Methyltransferases [Ge 88.5 0.85 1.8E-05 45.7 5.5 117 518-638 70-197 (227)
380 TIGR00417 speE spermidine synt 88.2 0.32 7E-06 51.1 2.6 101 516-621 73-185 (270)
381 PRK01581 speE spermidine synth 88.1 0.8 1.7E-05 50.5 5.6 105 515-623 150-269 (374)
382 KOG2904 Predicted methyltransf 88.1 1.7 3.7E-05 46.1 7.7 138 518-659 151-327 (328)
383 PF05971 Methyltransf_10: Prot 87.7 2 4.3E-05 46.3 8.1 96 229-328 81-188 (299)
384 KOG2793 Putative N2,N2-dimethy 87.6 4.9 0.00011 42.1 10.8 102 254-358 87-202 (248)
385 PF03269 DUF268: Caenorhabditi 87.6 0.36 7.9E-06 47.3 2.3 45 315-359 61-115 (177)
386 PRK14901 16S rRNA methyltransf 87.5 0.84 1.8E-05 51.4 5.5 117 518-636 255-402 (434)
387 COG1889 NOP1 Fibrillarin-like 87.5 5.4 0.00012 40.7 10.5 99 250-355 73-180 (231)
388 PRK09880 L-idonate 5-dehydroge 87.0 2.9 6.3E-05 44.9 9.1 94 254-356 170-267 (343)
389 PLN02585 magnesium protoporphy 86.6 0.82 1.8E-05 49.5 4.6 93 517-619 146-247 (315)
390 cd08254 hydroxyacyl_CoA_DH 6-h 86.5 3.9 8.6E-05 43.0 9.7 93 254-356 166-264 (338)
391 PF06859 Bin3: Bicoid-interact 86.4 0.37 8E-06 44.3 1.5 37 317-354 1-43 (110)
392 PRK00811 spermidine synthase; 86.0 0.51 1.1E-05 50.2 2.6 102 515-621 76-190 (283)
393 COG4106 Tam Trans-aconitate me 86.0 1.2 2.5E-05 45.8 5.0 140 512-665 27-192 (257)
394 PRK09424 pntA NAD(P) transhydr 85.9 4.5 9.8E-05 46.7 10.3 100 253-356 164-286 (509)
395 PF10294 Methyltransf_16: Puta 85.5 0.68 1.5E-05 45.5 3.0 96 515-621 45-155 (173)
396 PF03492 Methyltransf_7: SAM d 85.4 1.9 4.1E-05 47.1 6.7 106 253-360 16-188 (334)
397 KOG2920 Predicted methyltransf 84.6 0.42 9.2E-06 50.6 1.2 100 253-355 116-234 (282)
398 PF02527 GidB: rRNA small subu 84.6 1.9 4.2E-05 43.1 5.8 136 476-644 26-173 (184)
399 TIGR00006 S-adenosyl-methyltra 83.9 4.4 9.6E-05 43.8 8.5 57 232-297 7-63 (305)
400 COG0286 HsdM Type I restrictio 83.9 7.8 0.00017 44.5 11.1 120 231-358 172-329 (489)
401 PLN02366 spermidine synthase 83.8 1.5 3.2E-05 47.4 4.9 103 515-621 91-205 (308)
402 PF03291 Pox_MCEL: mRNA cappin 83.6 0.42 9E-06 52.1 0.7 58 573-632 139-198 (331)
403 PRK15128 23S rRNA m(5)C1962 me 83.1 1.1 2.5E-05 49.9 3.8 125 517-645 222-368 (396)
404 cd00315 Cyt_C5_DNA_methylase C 82.3 3.6 7.8E-05 43.5 7.1 67 256-325 2-70 (275)
405 COG1063 Tdh Threonine dehydrog 82.2 7.3 0.00016 42.6 9.6 96 255-358 170-272 (350)
406 PHA03411 putative methyltransf 82.0 1.4 2.9E-05 47.0 3.7 99 517-620 66-181 (279)
407 KOG1562 Spermidine synthase [A 82.0 3.6 7.7E-05 44.2 6.7 103 253-357 121-238 (337)
408 KOG2539 Mitochondrial/chloropl 81.0 5.7 0.00012 45.0 8.2 106 253-359 200-319 (491)
409 PF07757 AdoMet_MTase: Predict 80.8 1.4 3E-05 40.5 2.8 32 253-287 58-89 (112)
410 cd04789 HTH_Cfa Helix-Turn-Hel 80.5 0.065 1.4E-06 48.3 -5.9 57 95-161 33-89 (102)
411 PRK03612 spermidine synthase; 80.4 2.7 5.8E-05 48.6 5.7 119 516-640 298-438 (521)
412 PLN02476 O-methyltransferase 80.3 1.7 3.8E-05 46.2 3.8 133 515-660 118-278 (278)
413 PHA01634 hypothetical protein 80.1 7 0.00015 37.2 7.2 69 253-323 28-98 (156)
414 PF10354 DUF2431: Domain of un 79.9 12 0.00026 36.8 9.3 120 259-389 2-149 (166)
415 TIGR00479 rumA 23S rRNA (uraci 79.3 2.2 4.8E-05 47.8 4.5 113 517-644 294-418 (431)
416 PRK11524 putative methyltransf 79.2 1.7 3.7E-05 46.1 3.4 54 300-353 8-78 (284)
417 cd08245 CAD Cinnamyl alcohol d 79.1 11 0.00024 39.7 9.6 94 254-356 163-257 (330)
418 smart00650 rADc Ribosomal RNA 79.0 1.6 3.5E-05 42.3 2.9 94 517-623 15-114 (169)
419 PF00107 ADH_zinc_N: Zinc-bind 78.9 3.7 8E-05 37.3 5.1 86 263-358 1-92 (130)
420 PF01861 DUF43: Protein of unk 78.9 34 0.00074 35.9 12.5 123 254-389 45-175 (243)
421 PRK04148 hypothetical protein; 78.3 4.7 0.0001 38.4 5.7 93 517-647 18-111 (134)
422 KOG0024 Sorbitol dehydrogenase 78.3 12 0.00026 40.8 9.3 99 253-359 169-277 (354)
423 TIGR02822 adh_fam_2 zinc-bindi 77.6 13 0.00028 39.9 9.6 89 254-356 166-255 (329)
424 PHA03412 putative methyltransf 77.5 2 4.3E-05 44.8 3.1 98 518-619 52-160 (241)
425 COG2384 Predicted SAM-dependen 77.2 30 0.00065 35.8 11.4 117 255-390 18-141 (226)
426 KOG1541 Predicted protein carb 77.2 3.1 6.7E-05 43.0 4.3 121 514-640 49-178 (270)
427 PF02005 TRM: N2,N2-dimethylgu 77.1 13 0.00029 41.3 9.7 98 254-356 50-155 (377)
428 cd05188 MDR Medium chain reduc 76.9 14 0.00031 37.1 9.2 93 253-357 134-234 (271)
429 KOG1099 SAM-dependent methyltr 76.1 3 6.4E-05 43.3 3.9 97 254-356 42-164 (294)
430 cd08232 idonate-5-DH L-idonate 75.9 15 0.00032 39.0 9.4 93 254-356 166-263 (339)
431 TIGR00561 pntA NAD(P) transhyd 75.4 8.2 0.00018 44.6 7.6 95 253-352 163-281 (511)
432 KOG1596 Fibrillarin and relate 75.4 16 0.00035 38.3 8.9 98 253-357 156-263 (317)
433 KOG3115 Methyltransferase-like 74.9 3.5 7.5E-05 42.1 3.9 22 603-624 164-185 (249)
434 PF01135 PCMT: Protein-L-isoas 74.8 1.5 3.2E-05 44.8 1.3 90 518-620 75-170 (209)
435 PF01596 Methyltransf_3: O-met 74.8 1.4 3E-05 44.9 1.1 133 515-660 45-205 (205)
436 cd04775 HTH_Cfa-like Helix-Tur 74.3 0.12 2.5E-06 46.6 -6.1 57 95-161 33-89 (102)
437 KOG2198 tRNA cytosine-5-methyl 74.2 14 0.00031 40.8 8.7 109 252-360 154-301 (375)
438 KOG1501 Arginine N-methyltrans 74.0 5.7 0.00012 44.7 5.6 65 228-296 43-107 (636)
439 COG4627 Uncharacterized protei 73.9 0.55 1.2E-05 45.8 -1.9 47 569-621 39-85 (185)
440 COG3510 CmcI Cephalosporin hyd 73.6 9.5 0.00021 38.7 6.6 107 253-361 69-186 (237)
441 PRK13168 rumA 23S rRNA m(5)U19 73.3 4.8 0.0001 45.5 5.1 112 517-644 299-422 (443)
442 cd08234 threonine_DH_like L-th 73.2 20 0.00044 37.7 9.6 93 254-356 160-258 (334)
443 KOG1270 Methyltransferases [Co 72.8 0.87 1.9E-05 47.9 -0.9 94 517-624 91-197 (282)
444 cd08237 ribitol-5-phosphate_DH 72.4 15 0.00033 39.5 8.5 93 254-356 164-257 (341)
445 COG2813 RsmC 16S RNA G1207 met 72.3 4.1 8.8E-05 43.8 4.0 109 518-633 161-279 (300)
446 PRK10742 putative methyltransf 72.0 17 0.00037 38.3 8.3 49 235-292 76-124 (250)
447 PF07942 N2227: N2227-like pro 71.7 2.5 5.4E-05 44.9 2.2 75 565-646 149-242 (270)
448 cd04790 HTH_Cfa-like_unk Helix 70.5 0.73 1.6E-05 45.5 -2.0 60 94-163 33-94 (172)
449 cd08230 glucose_DH Glucose deh 70.5 22 0.00048 38.3 9.3 92 254-356 173-270 (355)
450 COG3129 Predicted SAM-dependen 70.2 11 0.00023 39.4 6.2 98 228-328 55-164 (292)
451 COG4122 Predicted O-methyltran 69.9 6.8 0.00015 40.4 4.8 132 515-660 59-218 (219)
452 TIGR03451 mycoS_dep_FDH mycoth 69.4 25 0.00054 38.0 9.4 94 254-356 177-277 (358)
453 KOG4300 Predicted methyltransf 69.0 2.5 5.5E-05 43.2 1.4 105 518-636 79-201 (252)
454 COG4301 Uncharacterized conser 68.6 52 0.0011 34.8 10.8 103 254-359 79-197 (321)
455 KOG2730 Methylase [General fun 68.5 5.2 0.00011 41.3 3.6 92 254-349 95-196 (263)
456 PRK03522 rumB 23S rRNA methylu 68.4 2.5 5.5E-05 45.4 1.5 111 517-644 175-294 (315)
457 TIGR01202 bchC 2-desacetyl-2-h 68.1 21 0.00046 37.8 8.4 86 254-356 145-232 (308)
458 TIGR02825 B4_12hDH leukotriene 68.0 46 0.001 35.2 11.0 93 254-356 139-238 (325)
459 PF05185 PRMT5: PRMT5 arginine 67.6 5.1 0.00011 45.5 3.7 112 516-635 187-319 (448)
460 KOG4589 Cell division protein 67.5 5.8 0.00013 40.1 3.6 101 253-360 69-189 (232)
461 TIGR03366 HpnZ_proposed putati 66.9 22 0.00048 37.0 8.1 93 254-356 121-219 (280)
462 cd08281 liver_ADH_like1 Zinc-d 66.9 25 0.00055 38.2 8.9 93 254-356 192-291 (371)
463 COG1189 Predicted rRNA methyla 66.9 6 0.00013 41.2 3.7 111 516-644 80-222 (245)
464 cd08239 THR_DH_like L-threonin 66.5 25 0.00054 37.4 8.6 94 254-356 164-263 (339)
465 PRK13699 putative methylase; P 66.4 6.2 0.00013 40.6 3.8 50 601-660 51-100 (227)
466 cd08255 2-desacetyl-2-hydroxye 65.7 31 0.00068 35.3 8.9 93 253-356 97-191 (277)
467 KOG2651 rRNA adenine N-6-methy 62.5 19 0.00041 40.1 6.6 40 253-294 153-192 (476)
468 PLN03154 putative allyl alcoho 62.4 56 0.0012 35.4 10.4 94 253-356 158-259 (348)
469 cd08261 Zn_ADH7 Alcohol dehydr 62.4 43 0.00093 35.5 9.4 93 254-356 160-259 (337)
470 PRK11933 yebU rRNA (cytosine-C 62.0 8.6 0.00019 44.0 4.2 100 518-621 116-241 (470)
471 TIGR00755 ksgA dimethyladenosi 62.0 7.5 0.00016 40.3 3.5 24 516-539 30-53 (253)
472 PF03514 GRAS: GRAS domain fam 61.3 76 0.0016 35.3 11.3 100 255-354 112-243 (374)
473 PTZ00357 methyltransferase; Pr 60.5 41 0.00089 40.2 9.1 95 255-351 702-831 (1072)
474 PRK00274 ksgA 16S ribosomal RN 60.5 7 0.00015 41.2 2.9 38 517-559 44-82 (272)
475 PF05891 Methyltransf_PK: AdoM 59.9 5.1 0.00011 41.2 1.7 125 514-649 54-204 (218)
476 PF01739 CheR: CheR methyltran 59.9 2.7 5.8E-05 42.5 -0.3 54 566-624 124-177 (196)
477 TIGR02054 MerD mercuric resist 59.7 5 0.00011 37.5 1.5 32 95-129 36-67 (120)
478 PF04445 SAM_MT: Putative SAM- 59.7 32 0.00069 35.9 7.4 82 236-326 64-160 (234)
479 COG0789 SoxR Predicted transcr 59.5 4.8 0.0001 36.8 1.3 32 96-130 34-65 (124)
480 PRK13749 transcriptional regul 58.8 4.9 0.00011 37.6 1.3 33 95-130 36-68 (121)
481 COG0287 TyrA Prephenate dehydr 58.7 42 0.0009 35.9 8.4 90 255-352 4-95 (279)
482 TIGR03201 dearomat_had 6-hydro 58.4 44 0.00094 36.0 8.7 94 254-356 167-273 (349)
483 PRK10611 chemotaxis methyltran 58.0 3.4 7.3E-05 44.3 0.0 44 577-624 221-264 (287)
484 cd05564 PTS_IIB_chitobiose_lic 57.8 22 0.00047 31.6 5.2 72 260-353 4-75 (96)
485 cd00401 AdoHcyase S-adenosyl-L 57.7 45 0.00097 37.7 8.8 87 253-356 201-290 (413)
486 PLN02740 Alcohol dehydrogenase 57.7 42 0.00091 36.7 8.6 94 254-356 199-301 (381)
487 PLN02586 probable cinnamyl alc 57.5 31 0.00067 37.5 7.4 94 254-356 184-279 (360)
488 PF01269 Fibrillarin: Fibrilla 56.9 13 0.00029 38.5 4.1 97 517-621 75-177 (229)
489 COG1565 Uncharacterized conser 56.8 22 0.00047 39.4 5.9 45 253-297 77-128 (370)
490 cd04782 HTH_BltR Helix-Turn-He 56.6 1.5 3.2E-05 39.1 -2.5 33 95-130 33-65 (97)
491 PF01795 Methyltransf_5: MraW 56.3 67 0.0015 34.9 9.5 73 232-326 7-79 (310)
492 COG0275 Predicted S-adenosylme 56.2 52 0.0011 35.7 8.5 61 230-298 8-68 (314)
493 PRK10309 galactitol-1-phosphat 55.8 52 0.0011 35.2 8.8 94 254-356 161-261 (347)
494 cd05278 FDH_like Formaldehyde 55.7 62 0.0013 34.3 9.3 92 254-355 168-267 (347)
495 cd04787 HTH_HMRTR_unk Helix-Tu 55.5 5.4 0.00012 37.6 0.9 34 94-130 32-65 (133)
496 PRK14896 ksgA 16S ribosomal RN 55.0 8.8 0.00019 40.1 2.6 21 516-536 30-50 (258)
497 cd08294 leukotriene_B4_DH_like 54.9 91 0.002 32.6 10.3 91 254-355 144-241 (329)
498 KOG1975 mRNA cap methyltransfe 54.8 6.6 0.00014 42.7 1.5 51 580-633 197-250 (389)
499 cd08242 MDR_like Medium chain 54.5 75 0.0016 33.3 9.6 88 254-354 156-244 (319)
500 cd05565 PTS_IIB_lactose PTS_II 54.1 26 0.00057 31.6 5.1 75 260-356 5-79 (99)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=1.6e-140 Score=1142.70 Aligned_cols=496 Identities=45% Similarity=0.901 Sum_probs=468.7
Q ss_pred CccccCCchhhhhc--ccccccccccCCCC-CCccccccCCCCCCCCCCCCCCCcccccccCCcchhHhhhhcccccccc
Q 005959 134 NYVPCFNESRNLAL--GYSNGDEVDRHCGQ-ELKQHCLVLPPVKYRIPLRWPTGRDVIWVSNVKITAQEVLSSGSLTKRM 210 (667)
Q Consensus 134 ~~~pC~d~~~~~~~--~~~~~~~~er~c~~-~~r~rcL~~~p~gy~~P~~WP~srd~~W~~Nvp~~~~~~ls~~k~~q~W 210 (667)
|||||+|+++++++ .+++++|+|||||+ +++.+||+|+|+|||.|++||+|||++||+|+||++ |+++|+.|||
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~---L~~~K~~qnW 77 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTK---LAEEKADQNW 77 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchH---Hhhhcccccc
Confidence 79999999999999 89999999999999 679999999999999999999999999999999999 7789999999
Q ss_pred ccccccccccccccccc-cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHH
Q 005959 211 MMLEEEQISFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS 289 (667)
Q Consensus 211 ~~~ek~~~~F~~~~~~y-d~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ 289 (667)
++.+++.+.|++++++| +++.+|+++|.++++... .....+++||||||+|+|+++|.++++.++++++.|.++.
T Consensus 78 v~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~----~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~ 153 (506)
T PF03141_consen 78 VRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIK----WGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEA 153 (506)
T ss_pred eeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccc----cCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCch
Confidence 99999999999999999 789999999999998621 1236789999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHH
Q 005959 290 QVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN 369 (667)
Q Consensus 290 ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~ 369 (667)
++++|.+||+++.+..+...+|||++++||+|||+.|++.|.++...+|.|++|+|||||+|+++.|..+. ..+.+.
T Consensus 154 qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~---r~~~~~ 230 (506)
T PF03141_consen 154 QVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQ---RTDEDL 230 (506)
T ss_pred hhhhhhhcCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcccc---cchHHH
Confidence 99999999999999888889999999999999999999999988889999999999999999999998772 244567
Q ss_pred HhhhhhhhhhhhccceEEeeccCceEEEeecccccccccCCCCCCCCcCCCCCCCCCCcccccccccccCCCC-cccCCc
Q 005959 370 QKRWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPLQPCIGGTRNR-RWIPIE 448 (667)
Q Consensus 370 ~~~W~~ie~l~~~~~W~ll~~~~~~~IwqK~~~~~C~~~R~~~~~p~lC~~~~d~~~~wY~~l~~Ci~~~~~~-~~~~~~ 448 (667)
...|..|+.+++++||++++++++++|||||.+++||.+|+....|++|+.++|++++||+||++||+++|.. .++.++
T Consensus 231 ~~~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit~~p~~~~~~~~~ 310 (506)
T PF03141_consen 231 EEEWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNNSCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACITPLPEVSSEIAGG 310 (506)
T ss_pred HHHHHHHHHHHHHHHHHHheeeCCEEEEeccCCchhhhhccCCCCCCCCCCCCCCcchhhcchhhhcCcCCccccccccc
Confidence 7899999999999999999999999999999999999999998889999999999999999999999999975 466788
Q ss_pred ccCCCCcccccCCcccee---cccCccccccchhhhHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEecccc
Q 005959 449 ERRNWPSRANLNKNELAV---YGVHPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAH 525 (667)
Q Consensus 449 ~~~~WP~rl~~~~~~l~~---~~~~~~~f~~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~~R~vlDm~~~ 525 (667)
.+++||+||+++|+||.. .|.+++.|.+|+++|+++|++|++++... +.+++||||||||||
T Consensus 311 ~~~~WP~RL~~~P~rl~~~~~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~---------------i~~~~iRNVMDMnAg 375 (506)
T PF03141_consen 311 WLPKWPERLNAVPPRLSSGSIPGISPEEFKEDTKHWKKRVSHYKKLLGLA---------------IKWGRIRNVMDMNAG 375 (506)
T ss_pred CCCCChhhhccCchhhhcCCcCCCCHHHHHHHHHHHHHHHHHHHHhhccc---------------ccccceeeeeeeccc
Confidence 999999999999999975 88999999999999999999999988643 357899999999999
Q ss_pred chhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcccccccccccccCCCCCCCccccccccCccccccCCCCCCCcchhh
Q 005959 526 FGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIF 605 (667)
Q Consensus 526 ~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l 605 (667)
||||||||.+ +|||||||||++++|||++||||||||+||||||+|||||||||||||+++||.++ +||+|++||
T Consensus 376 ~GGFAAAL~~--~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~---~rC~~~~il 450 (506)
T PF03141_consen 376 YGGFAAALID--DPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYK---DRCEMEDIL 450 (506)
T ss_pred ccHHHHHhcc--CCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhc---ccccHHHHH
Confidence 9999999987 89999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred eeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEeeeccCC--CccEEEEEc
Q 005959 606 TEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNS--DERLLICQK 659 (667)
Q Consensus 606 ~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~~~~~--~~~~li~~K 659 (667)
+||||||||||++||||+.+++++|++|+++|+|+++++++|+++ +|+||||||
T Consensus 451 lEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 451 LEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 999999999999999999999999999999999999999999986 699999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=9.1e-43 Score=379.55 Aligned_cols=199 Identities=23% Similarity=0.354 Sum_probs=176.4
Q ss_pred ccccccCCCCcccCCcccCCCCccc------ccCCccceeccc---------CccccccchhhhHHHHHHHHHhhccccc
Q 005959 433 QPCIGGTRNRRWIPIEERRNWPSRA------NLNKNELAVYGV---------HPEEFAEDTENWKTAVGNFWSLLSPLIF 497 (667)
Q Consensus 433 ~~Ci~~~~~~~~~~~~~~~~WP~rl------~~~~~~l~~~~~---------~~~~f~~d~~~w~~~v~~Y~~~l~~~~~ 497 (667)
..|++|+|.+|++|+ +||++. |+++++|+.++. +...|++++++|+++|.+|++.|.+|+.
T Consensus 35 ~~CLVp~P~gYk~P~----~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~ 110 (506)
T PF03141_consen 35 LRCLVPPPKGYKTPI----PWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIP 110 (506)
T ss_pred CccccCCCccCCCCC----CCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHHHHHHHHHHhh
Confidence 899999999999999 999966 788888876543 4578999999999999999999999983
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc---cccccccccCC
Q 005959 498 SDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWCEAF 573 (667)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl---ig~~~~~c~~f 573 (667)
.. ...+.||++||+|||+|||||+|++ ++|.+|+++|.+.| +|+|||+|||+ ||++.+...||
T Consensus 111 ~~-----------~~~g~iR~~LDvGcG~aSF~a~l~~--r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPf 177 (506)
T PF03141_consen 111 LI-----------KWGGGIRTALDVGCGVASFGAYLLE--RNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPF 177 (506)
T ss_pred cc-----------ccCCceEEEEeccceeehhHHHHhh--CCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccC
Confidence 21 2347899999999999999999998 99999999999999 99999999996 77777888888
Q ss_pred CCCCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcC----------HHHHHHHHHHHhhCCCeeEE
Q 005959 574 PTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT----------ARLIESARALTTRLKWDARV 643 (667)
Q Consensus 574 ~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~----------~~~~~~~~~~~~~~~W~~~~ 643 (667)
|. +|||||||++|.+.|+. .- ..+|+|+|||||||||||++.. .++|++|+++|++|||+.++
T Consensus 178 p~--~~fDmvHcsrc~i~W~~---~~--g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va 250 (506)
T PF03141_consen 178 PS--NAFDMVHCSRCLIPWHP---ND--GFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVA 250 (506)
T ss_pred Cc--cchhhhhcccccccchh---cc--cceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhe
Confidence 87 99999999999999983 22 3699999999999999999633 57899999999999999999
Q ss_pred eeeccCCCccEEEEEccc
Q 005959 644 IEIESNSDERLLICQKPF 661 (667)
Q Consensus 644 ~~~~~~~~~~~li~~K~~ 661 (667)
.+ ++++|||||.
T Consensus 251 ~~------~~~aIwqKp~ 262 (506)
T PF03141_consen 251 EK------GDTAIWQKPT 262 (506)
T ss_pred ee------CCEEEEeccC
Confidence 85 7899999985
No 3
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.76 E-value=5.5e-18 Score=190.04 Aligned_cols=102 Identities=18% Similarity=0.183 Sum_probs=82.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeeccc--CCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASK--QLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~--~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||||||+|.++..|++.+ ..++++|.++.|++.+++.. .++.+.+.++. .+++++++||+|+|..+++
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 3689999999999999999874 36899999999998876532 24556666764 5788889999999998855
Q ss_pred ccccC-HHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 329 DWDQK-DGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 329 ~~~~d-~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
|+.++ ...+++++.|+|||||++++.+...
T Consensus 115 ~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 115 YLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 54332 3689999999999999999987654
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.73 E-value=2.1e-17 Score=169.15 Aligned_cols=107 Identities=23% Similarity=0.249 Sum_probs=95.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCC-----ceEEeecccCCCCCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP-----AMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~-----~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
++.+|||||||||.++..+++..- ...|+++|+|+.|++.|+++... +.++.+|+++|||+|++||+|.+++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg- 128 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG- 128 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh-
Confidence 358999999999999999998843 67899999999999999987543 67889999999999999999999998
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCCChh
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ 361 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~ 361 (667)
++..++.+++|+|++|||||||.+++.+......
T Consensus 129 lrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 129 LRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred hhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 7777899999999999999999999998766543
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.69 E-value=6.6e-17 Score=165.77 Aligned_cols=106 Identities=23% Similarity=0.275 Sum_probs=80.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----CCceEEeecccCCCCCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg-----l~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
.+.+|||+|||||.++..++++......|+++|+|+.|++.|+++. .++.+.++|++++||++++||+|+|++.
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg- 125 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG- 125 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES--
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh-
Confidence 3479999999999999999887445568999999999999998652 2678899999999999999999999998
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
++..++..++|+|++|+|||||.+++.+....
T Consensus 126 lrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 126 LRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred HHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 66667889999999999999999999887543
No 6
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.66 E-value=6.1e-16 Score=159.23 Aligned_cols=135 Identities=19% Similarity=0.276 Sum_probs=110.9
Q ss_pred ccccccccccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC
Q 005959 219 SFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 298 (667)
Q Consensus 219 ~F~~~~~~yd~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg 298 (667)
.|++.+..|+..+..++.+++.+..... .....+|||+|||+|.++..+++.+ ..++++|+|+.|++.|+++.
T Consensus 12 ~F~~aa~~Y~~~~~~q~~~a~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 12 AFGRAAAHYEQHAELQRQSADALLAMLP----QRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHhcC----ccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhC
Confidence 6888888887766666666655432211 1235789999999999999998764 46899999999999999886
Q ss_pred CCceEEeecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCChh
Q 005959 299 LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ 361 (667)
Q Consensus 299 l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~ 361 (667)
....+.++|++.+|+++++||+|+++.+ ++|.+++..+|.++.++|||||.++++.+.....
T Consensus 85 ~~~~~~~~d~~~~~~~~~~fD~V~s~~~-l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 146 (251)
T PRK10258 85 AADHYLAGDIESLPLATATFDLAWSNLA-VQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSL 146 (251)
T ss_pred CCCCEEEcCcccCcCCCCcEEEEEECch-hhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCch
Confidence 5566788899999999999999999977 7888899999999999999999999999876553
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.65 E-value=1.1e-15 Score=159.03 Aligned_cols=107 Identities=20% Similarity=0.151 Sum_probs=90.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--------CCceEEeecccCCCCCCCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--------LPAMIGSFASKQLPYPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg--------l~~~~~~~da~~Lpfpd~sFDlV~~s 324 (667)
+..+|||||||+|.++..++++......|+++|+|++|++.|+++. .++.+.+++++.+|+++++||+|+++
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 3479999999999999998876222357999999999999987652 24668889999999999999999999
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
++ +|+.+++..+++|+.|+|||||++++.+.....
T Consensus 153 ~~-l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 153 YG-LRNVVDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred cc-cccCCCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 88 666778899999999999999999999876543
No 8
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.65 E-value=4.1e-16 Score=134.24 Aligned_cols=93 Identities=30% Similarity=0.463 Sum_probs=78.9
Q ss_pred EEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCC--ceEEeecccCCCCCCCCccEEEecccccccccCHH
Q 005959 258 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP--AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDG 335 (667)
Q Consensus 258 LDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~--~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~ 335 (667)
||+|||+|.++..|+++ ...+++++|+++++++.++++... ..+..++.+.+|+++++||+|++..+ +++.++..
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~-~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSV-LHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESH-GGGSSHHH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccc-eeeccCHH
Confidence 89999999999999998 356799999999999999887543 34888899999999999999999988 55558888
Q ss_pred HHHHHHHhcccCCeEEEE
Q 005959 336 ILLLEVDRVLKPGGYFVW 353 (667)
Q Consensus 336 ~~L~Ei~RvLKPGG~Lvi 353 (667)
++++|+.|+|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 9
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.50 E-value=2e-13 Score=129.15 Aligned_cols=98 Identities=30% Similarity=0.577 Sum_probs=81.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||||||+|.++..|++.+. .++++|+++.+++. ........+....++++++||+|+|+.+ +++.+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~-l~~~~ 92 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDV-LEHLP 92 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESS-GGGSS
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHH-Hhhcc
Confidence 347999999999999999988864 69999999999988 2333443444456678899999999988 66677
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
++..+|+++.++|||||+++++++...
T Consensus 93 d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 93 DPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp HHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred cHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 899999999999999999999999754
No 10
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.50 E-value=1e-13 Score=143.35 Aligned_cols=100 Identities=22% Similarity=0.339 Sum_probs=85.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||||||+|.++..|++.. +...++++|+|+.|++.|++++ +.+..+|++.++ ++++||+|+|+.+ +||.+
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~~--~~~~~~d~~~~~-~~~~fD~v~~~~~-l~~~~ 103 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARERG--VDARTGDVRDWK-PKPDTDVVVSNAA-LQWVP 103 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhcC--CcEEEcChhhCC-CCCCceEEEEehh-hhhCC
Confidence 34799999999999999998873 3457999999999999998875 456667877774 5679999999987 77788
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++..+++++.++|||||++++..+.
T Consensus 104 d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 104 EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 8899999999999999999998764
No 11
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.50 E-value=1.7e-13 Score=138.03 Aligned_cols=106 Identities=23% Similarity=0.333 Sum_probs=91.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-CceEEeecccCCCCCCCCccEEEecccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
.+.+|||||||+|.++..+++.+ ....++++|.++.+++.++++.. ++.+..++...+++++++||+|++..+ +|+.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~-l~~~ 111 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLA-LQWC 111 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhh-hhhc
Confidence 34789999999999999999885 34568999999999998887643 456777888999999999999999988 7777
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 332 QKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
.++..++.++.++|+|||.++++++....
T Consensus 112 ~~~~~~l~~~~~~L~~~G~l~~~~~~~~~ 140 (240)
T TIGR02072 112 DDLSQALSELARVLKPGGLLAFSTFGPGT 140 (240)
T ss_pred cCHHHHHHHHHHHcCCCcEEEEEeCCccC
Confidence 88889999999999999999999886544
No 12
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.49 E-value=1.6e-13 Score=139.50 Aligned_cols=108 Identities=20% Similarity=0.173 Sum_probs=91.2
Q ss_pred cccCCCEEEEeCCCCchHHHHHhhcCCc-----eeEEEEecCCHHHHHHHHHcC----C----CceEEeecccCCCCCCC
Q 005959 250 ILAGVRTILDIGCGYGSFGAHLFSKELL-----TMCIANYEASGSQVQLTLERG----L----PAMIGSFASKQLPYPSL 316 (667)
Q Consensus 250 ~~~~~~~VLDIGCGtG~~t~~La~~g~~-----~~sV~gvD~S~~ml~~A~erg----l----~~~~~~~da~~Lpfpd~ 316 (667)
.+....++||++||||..+..+.++--. ...|+..|+++.|++.+++|. + ...++.+|++.|||+++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~ 176 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDD 176 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCC
Confidence 3556799999999999999999887222 267999999999998887663 2 25688899999999999
Q ss_pred CccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 317 SFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 317 sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+||+.+.++. +....+++++|+|++|||||||+|.+-++..
T Consensus 177 s~D~yTiafG-IRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 177 SFDAYTIAFG-IRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred cceeEEEecc-eecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 9999999988 5555788999999999999999999888754
No 13
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.49 E-value=6e-14 Score=142.32 Aligned_cols=105 Identities=18% Similarity=0.321 Sum_probs=91.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+.+|||||||.|.++..||+.| .+|+++|.++.+|+.|+.+ ++.+.+.+..++++....++||+|+|..+ +
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEV-l 134 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEV-L 134 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhH-H
Confidence 34799999999999999999997 5699999999999988744 56666777788888777789999999999 5
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCCCChh
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ 361 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~ 361 (667)
+|.++++.+++++.+.+||||.+++++++....
T Consensus 135 EHv~dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 135 EHVPDPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred HccCCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 557899999999999999999999999986553
No 14
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.48 E-value=1.9e-13 Score=135.97 Aligned_cols=204 Identities=18% Similarity=0.256 Sum_probs=145.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|.|+|||+|..|..|+++ ++...|+|+|.|++|++.|+++.++..|..+|+..+. ++..+|+++++.+ ++|.+
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~-p~~~~dllfaNAv-lqWlp 106 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK-PEQPTDLLFANAV-LQWLP 106 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC-CCCccchhhhhhh-hhhcc
Confidence 4589999999999999999988 6778899999999999999999999999989987774 4568999999966 99999
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeeccCceEEEeecc-cccccccCCC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQDETVVWKKTS-KASCYSSRKP 411 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~~~~~~IwqK~~-~~~C~~~R~~ 411 (667)
+...+|..+...|.|||.|.+..|..... .....|++.++..-|......... -+++. ...-|-+.-
T Consensus 107 dH~~ll~rL~~~L~Pgg~LAVQmPdN~de---------psH~~mr~~A~~~p~~~~l~~~~~--~r~~v~s~a~Yy~lL- 174 (257)
T COG4106 107 DHPELLPRLVSQLAPGGVLAVQMPDNLDE---------PSHRLMRETADEAPFAQELGGRGL--TRAPLPSPAAYYELL- 174 (257)
T ss_pred ccHHHHHHHHHhhCCCceEEEECCCccCc---------hhHHHHHHHHhcCchhhhhCcccc--ccCCCCCHHHHHHHh-
Confidence 99999999999999999999998754321 223456666666666555443322 13332 222332221
Q ss_pred CCCCCcCCCCCCCCCCcccccccccccCCCCcccCCcccCCCCcccccCCccceecccCccccccchhhhHHHHHHHHHh
Q 005959 412 GSGPSICSKGNDVESPYYRPLQPCIGGTRNRRWIPIEERRNWPSRANLNKNELAVYGVHPEEFAEDTENWKTAVGNFWSL 491 (667)
Q Consensus 412 ~~~p~lC~~~~d~~~~wY~~l~~Ci~~~~~~~~~~~~~~~~WP~rl~~~~~~l~~~~~~~~~f~~d~~~w~~~v~~Y~~~ 491 (667)
.+.-|. -+.+++.||++|..-- +--.|+.+..+.||=++| |.+.|+.-...|..+
T Consensus 175 --a~~~~r-vDiW~T~Y~h~l~~a~---aIvdWvkgTgLrP~L~~L-------------------~e~~~~~FL~~Y~~~ 229 (257)
T COG4106 175 --APLACR-VDIWHTTYYHQLPGAD---AIVDWVKGTGLRPYLDRL-------------------DEEERQRFLDRYLAL 229 (257)
T ss_pred --Ccccce-eeeeeeeccccCCCcc---chhhheeccccceecccc-------------------CHHHHHHHHHHHHHH
Confidence 133443 5678889998654321 112354444444443333 566788888999998
Q ss_pred hcccc
Q 005959 492 LSPLI 496 (667)
Q Consensus 492 l~~~~ 496 (667)
|..-.
T Consensus 230 l~~aY 234 (257)
T COG4106 230 LAEAY 234 (257)
T ss_pred HHHhC
Confidence 87654
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=99.48 E-value=2.8e-13 Score=146.36 Aligned_cols=103 Identities=21% Similarity=0.291 Sum_probs=87.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
.+.+|||||||+|.++..|++.. ...|+++|+|+.|++.++++ ++ ++.+.++|+..+|+++++||+|+|..+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 45789999999999999999863 35799999999999887653 33 467888899999999999999999988
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+. +.++...+++++.|+|||||.|++.+...
T Consensus 196 ~~-h~~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 196 GE-HMPDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred hh-ccCCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 44 45678899999999999999999988643
No 16
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.48 E-value=2e-13 Score=146.20 Aligned_cols=103 Identities=15% Similarity=0.178 Sum_probs=88.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
...+|||||||+|.++..|++.+ ..|+++|.++.|++.|+++. ..+.+.+++++.+++++++||+|+|..+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 45799999999999999998875 46899999999999987652 1466788888899988899999999998
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+++..++..+++++.++|||||.++++++...
T Consensus 208 -LeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 208 -IEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred -HHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 55567889999999999999999999988654
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.47 E-value=4.4e-13 Score=135.99 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=88.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||+|||+|.++..+++.......++++|.++.|++.|+++ +. ++.+..+++..+++++++||+|++..+ +
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~-l 124 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFG-L 124 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecc-c
Confidence 47999999999999999987632345799999999999888754 22 456777888889998899999999977 6
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
++.++...+++++.++|+|||++++.++...
T Consensus 125 ~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~ 155 (231)
T TIGR02752 125 RNVPDYMQVLREMYRVVKPGGKVVCLETSQP 155 (231)
T ss_pred ccCCCHHHHHHHHHHHcCcCeEEEEEECCCC
Confidence 6778888999999999999999999876543
No 18
>PRK05785 hypothetical protein; Provisional
Probab=99.47 E-value=2.3e-13 Score=138.91 Aligned_cols=89 Identities=16% Similarity=0.228 Sum_probs=78.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d 333 (667)
..+|||||||||.++..+++.. ...|+++|+|++|++.|+++. .+.+++++.+||++++||+|+|+++ +|+.++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~lp~~d~sfD~v~~~~~-l~~~~d 125 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---DKVVGSFEALPFRDKSFDVVMSSFA-LHASDN 125 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---ceEEechhhCCCCCCCEEEEEecCh-hhccCC
Confidence 4799999999999999998873 247999999999999998763 3467789999999999999999988 667788
Q ss_pred HHHHHHHHHhcccCC
Q 005959 334 DGILLLEVDRVLKPG 348 (667)
Q Consensus 334 ~~~~L~Ei~RvLKPG 348 (667)
++++++|++|+|||.
T Consensus 126 ~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 126 IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999999999995
No 19
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.46 E-value=6.1e-13 Score=139.15 Aligned_cols=105 Identities=25% Similarity=0.324 Sum_probs=87.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCc--eeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELL--TMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~--~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
...+|||||||+|.++..+++.... ...++++|+|+.|++.|.++..++.+.++++..+|+++++||+|++.++
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 3468999999999999999875211 2368999999999999988877788888999999999999999998754
Q ss_pred ccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhh
Q 005959 331 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLR 365 (667)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr 365 (667)
...+.|+.|+|||||+|++..+...+..+++
T Consensus 161 ----~~~~~e~~rvLkpgG~li~~~p~~~~l~el~ 191 (272)
T PRK11088 161 ----PCKAEELARVVKPGGIVITVTPGPRHLFELK 191 (272)
T ss_pred ----CCCHHHHHhhccCCCEEEEEeCCCcchHHHH
Confidence 1246899999999999999999877655443
No 20
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.46 E-value=4.5e-13 Score=139.76 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=93.0
Q ss_pred HHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---CceEEeecccC
Q 005959 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---PAMIGSFASKQ 310 (667)
Q Consensus 234 ~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---~~~~~~~da~~ 310 (667)
...+.+.+...+ ..+|||||||+|..+..+++.. ...|+++|+|+.|++.|+++.. .+.+..+|+..
T Consensus 41 ~~~~l~~l~l~~--------~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~ 110 (263)
T PTZ00098 41 TTKILSDIELNE--------NSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILK 110 (263)
T ss_pred HHHHHHhCCCCC--------CCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCccc
Confidence 344555554443 3799999999999999998652 3579999999999999987642 46677888888
Q ss_pred CCCCCCCccEEEecccccccc-cCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 311 LPYPSLSFDMLHCARCGVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 311 Lpfpd~sFDlV~~s~~ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.|+++++||+|++..+++|+. .+...+++++.++|||||+|+++++..
T Consensus 111 ~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 111 KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 999999999999988766654 367789999999999999999998754
No 21
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.44 E-value=8.1e-13 Score=136.49 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=87.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||||||+|.++..+++.. ....++++|+|+.|++.|+++..++.+..+|+..+. ++++||+|+|+.+ +||..
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~-l~~~~ 107 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQ-PPQALDLIFANAS-LQWLP 107 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccC-CCCCccEEEEccC-hhhCC
Confidence 34799999999999999998763 446799999999999999888666777778877665 4569999999987 77888
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+...+++++.++|||||.+++..+.
T Consensus 108 d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 108 DHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CHHHHHHHHHHhcCCCcEEEEECCC
Confidence 8889999999999999999998653
No 22
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.42 E-value=1e-12 Score=136.08 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=86.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCC-CCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-YPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lp-fpd~sFDlV~~s~ 325 (667)
.+.+|||+|||+|.++..|++.+ ..|+++|+|+.|++.|+++ ++ ++.+.++++..++ +++++||+|+|..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45799999999999999999985 4689999999999988765 32 3567777877764 6678999999998
Q ss_pred cccccccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+ +++.+++..++.++.++|||||++++..+...
T Consensus 121 v-l~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 121 V-LEWVADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred H-HHhhCCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 8 66777888999999999999999999876543
No 23
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.41 E-value=2e-13 Score=140.20 Aligned_cols=199 Identities=18% Similarity=0.225 Sum_probs=129.8
Q ss_pred cccccccccccccccccccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHH
Q 005959 210 MMMLEEEQISFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS 289 (667)
Q Consensus 210 W~~~ek~~~~F~~~~~~yd~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ 289 (667)
|++...+...+-+.+.||-...+ ++.+++.......-......++||||+|.|..|..|+.. ...|++.+.|..
T Consensus 54 ~f~S~T~iNG~LgRG~MFvfS~~---Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~---f~~v~aTE~S~~ 127 (265)
T PF05219_consen 54 WFMSKTDINGILGRGSMFVFSEE---QFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPL---FKEVYATEASPP 127 (265)
T ss_pred HHHhHHhHhhhhcCCcEEEecHH---HHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhh---cceEEeecCCHH
Confidence 44444455578888889865544 333333322110001134578999999999999999876 456899999999
Q ss_pred HHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHH
Q 005959 290 QVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN 369 (667)
Q Consensus 290 ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~ 369 (667)
|....+++|..+. +...+.-.+.+||+|.|.++ +.-.++|..+|+++++.|+|+|+++++...+.. +..|.
T Consensus 128 Mr~rL~~kg~~vl----~~~~w~~~~~~fDvIscLNv-LDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~----pyVE~ 198 (265)
T PF05219_consen 128 MRWRLSKKGFTVL----DIDDWQQTDFKFDVISCLNV-LDRCDRPLTLLRDIRRALKPNGRLILAVVLPFR----PYVEF 198 (265)
T ss_pred HHHHHHhCCCeEE----ehhhhhccCCceEEEeehhh-hhccCCHHHHHHHHHHHhCCCCEEEEEEEeccc----ccEEc
Confidence 9999999986432 33444444568999999988 777788999999999999999999999866543 22222
Q ss_pred Hh-hhhhhhhhhhcc--ceEEeeccCceEEEeecccccccccCCCCCCCCcCCCCCCCCCCccc
Q 005959 370 QK-RWNFVRDFVENL--CWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYR 430 (667)
Q Consensus 370 ~~-~W~~ie~l~~~~--~W~ll~~~~~~~IwqK~~~~~C~~~R~~~~~p~lC~~~~d~~~~wY~ 430 (667)
-. .|....+..+-. .|+..+.. .+ +......++-....+.||+|+ +|...+||+
T Consensus 199 ~~g~~~~P~e~l~~~g~~~E~~v~~---l~--~v~~p~GF~v~~~tr~PYLcE--GD~~~~~Y~ 255 (265)
T PF05219_consen 199 GGGKSNRPSELLPVKGATFEEQVSS---LV--NVFEPAGFEVERWTRLPYLCE--GDLYQSYYV 255 (265)
T ss_pred CCCCCCCchhhcCCCCCcHHHHHHH---HH--HHHHhcCCEEEEEeccCcccc--CcccCceEE
Confidence 11 343333332222 22221111 11 222334444455666799999 889999998
No 24
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.41 E-value=9.8e-13 Score=125.36 Aligned_cols=103 Identities=24% Similarity=0.357 Sum_probs=86.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC--CCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lp--fpd~sFDlV~~s~ 325 (667)
...+|||+|||+|.++..|++...+...++++|.++.|++.|+++ +. ++.+.+.|+.+++ ++ +.||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 357999999999999999995423456799999999999998763 44 4778889998887 66 7999999997
Q ss_pred cccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+ +++..+...+++++.++|++||.+++.++.
T Consensus 82 ~-l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 V-LHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp T-GGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred c-hhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 7 577778889999999999999999999886
No 25
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.41 E-value=2e-12 Score=132.51 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=83.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcC-CceeEEEEecCCHHHHHHHHHc------CCCceEEeecccCCCCCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKE-LLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQLPYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g-~~~~sV~gvD~S~~ml~~A~er------gl~~~~~~~da~~Lpfpd~sFDlV~~s~ 325 (667)
...+|||||||+|.++..++++. .+...++++|+|+.|++.|+++ ..++.+..+++..++++ .+|+|+++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 34689999999999999998752 2356799999999999998765 22457788888888876 489999998
Q ss_pred ccccccc--CHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 326 CGVDWDQ--KDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 326 ~ll~~~~--d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+ +|+.+ +...++++++|+|||||.|+++++...
T Consensus 131 ~-l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 131 T-LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred c-hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 8 45443 346799999999999999999987543
No 26
>PRK08317 hypothetical protein; Provisional
Probab=99.39 E-value=3.4e-12 Score=128.29 Aligned_cols=103 Identities=27% Similarity=0.373 Sum_probs=87.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
..+|||+|||+|.++..+++.......++++|.++.+++.++++ ...+.+...++..+++++++||+|++..+ ++
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~-~~ 98 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRV-LQ 98 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEech-hh
Confidence 37999999999999999988642346799999999999998876 33466777888888898899999999988 55
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+..++..+++++.++|||||++++.++.
T Consensus 99 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 99 HLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 5678889999999999999999998864
No 27
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.39 E-value=1.6e-12 Score=116.41 Aligned_cols=101 Identities=21% Similarity=0.261 Sum_probs=78.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCceEEeecc-cCCCCCCCCccEEEecc-
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFAS-KQLPYPSLSFDMLHCAR- 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~~da-~~Lpfpd~sFDlV~~s~- 325 (667)
..+|||||||+|.++..+++.. ....++++|.|+.|++.|+++. .++.+.+.|+ ...... +.||+|++..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D~v~~~~~ 79 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFDLVICSGF 79 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEEEEEECSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCCEEEECCC
Confidence 4789999999999999999931 2456999999999999887653 4667788887 333333 4699999998
Q ss_pred cccccc--cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 326 CGVDWD--QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 326 ~ll~~~--~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+..++. ++...+++++.+.|+|||+|++.++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 433233 3456899999999999999999763
No 28
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.38 E-value=3.3e-12 Score=127.59 Aligned_cols=98 Identities=17% Similarity=0.262 Sum_probs=77.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||+|||+|.++..|++++. +|+++|.|+.|++.++++ ++. +.+..+|...++++ ++||+|+|+.+++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~ 106 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDFILSTVVLM 106 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCEEEEecchh
Confidence 37899999999999999999863 689999999999877643 332 55666777777775 5799999998844
Q ss_pred cccc-CHHHHHHHHHhcccCCeEEEEEe
Q 005959 329 DWDQ-KDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 329 ~~~~-d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
++.+ +...++.++.++|||||++++..
T Consensus 107 ~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 107 FLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3332 34689999999999999966543
No 29
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.36 E-value=6.4e-12 Score=125.33 Aligned_cols=98 Identities=15% Similarity=0.285 Sum_probs=77.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
+.+|||+|||+|.++..|++++ ..|+++|.|+.|++.+++ .++++.+..++....+++ ++||+|+|+.++++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCEEEEeccccc
Confidence 3689999999999999999986 368999999999987653 355666666676666665 58999999987444
Q ss_pred cc-cCHHHHHHHHHhcccCCeEEEEEe
Q 005959 330 WD-QKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 330 ~~-~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.. ++...+++++.++|||||++++.+
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 33 334689999999999999966654
No 30
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.36 E-value=9.7e-13 Score=116.85 Aligned_cols=93 Identities=25% Similarity=0.402 Sum_probs=74.1
Q ss_pred EEEeCCCCchHHHHHhhcC--CceeEEEEecCCHHHHHHHHHcC----CCceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 257 ILDIGCGYGSFGAHLFSKE--LLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 257 VLDIGCGtG~~t~~La~~g--~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
|||+|||+|..+..+++.. -....++++|+|++|++.++++. .++.+.++|+.++++.+++||+|+|....+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999773 12368999999999999988764 78899999999999999999999996553444
Q ss_pred ccC--HHHHHHHHHhcccCCe
Q 005959 331 DQK--DGILLLEVDRVLKPGG 349 (667)
Q Consensus 331 ~~d--~~~~L~Ei~RvLKPGG 349 (667)
..+ ...+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 433 3679999999999998
No 31
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.35 E-value=5.4e-12 Score=135.45 Aligned_cols=100 Identities=21% Similarity=0.255 Sum_probs=83.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH--Hc----CCCceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL--ER----GLPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~--er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
+.+|||||||+|.++..+++.+.. .|+|+|+|+.|+..++ ++ ..++.+..++++.+|+ +++||+|+|..+
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v- 198 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV- 198 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh-
Confidence 479999999999999999988643 5999999999986432 22 2356778888999998 789999999988
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+++..++..+|++++++|+|||.|++.+..
T Consensus 199 l~H~~dp~~~L~~l~~~LkpGG~lvl~~~~ 228 (322)
T PRK15068 199 LYHRRSPLDHLKQLKDQLVPGGELVLETLV 228 (322)
T ss_pred hhccCCHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 555678889999999999999999998653
No 32
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.35 E-value=7.3e-12 Score=129.33 Aligned_cols=103 Identities=15% Similarity=0.191 Sum_probs=81.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~ 325 (667)
...+|||||||+|..+..+++. ..+...++++|+|+.|++.|+++ +. ++.+.++++..+|++ .||+|+++.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 3478999999999999888763 12456799999999999998765 22 466778888888775 499999998
Q ss_pred cccccccC--HHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 326 CGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 326 ~ll~~~~d--~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+ +|+.++ ...+++++.++|||||.|++++...
T Consensus 134 ~-l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 134 T-LQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred H-HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 7 444433 2579999999999999999998543
No 33
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.35 E-value=6.9e-12 Score=140.94 Aligned_cols=103 Identities=21% Similarity=0.301 Sum_probs=87.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
...+|||||||+|..+..|++.. ...++++|+|+.|++.|+++. ..+.+..+|...+++++++||+|+|..+ +
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~s~~~-l 342 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDT-I 342 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEEEEEECCc-c
Confidence 45799999999999999998762 357999999999999987652 2456778888889999899999999988 4
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
++.+++..++++++|+|||||.++++++..
T Consensus 343 ~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 343 LHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred cccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 555788899999999999999999998754
No 34
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.34 E-value=6e-12 Score=135.66 Aligned_cols=102 Identities=20% Similarity=0.201 Sum_probs=86.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCceEEeecccCCCCCCCCccEEEecccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
..+|||||||+|.++..+++.. ....++++|.|+.|++.|+++. .++.+..++++.+++++++||+|+++.+ +++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~-L~~~ 191 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGS-IEYW 191 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcCh-hhhC
Confidence 4799999999999999888752 2357999999999999988763 2456778899999999999999999987 5556
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 332 QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++...+|+++.|+|||||.+++.++.
T Consensus 192 ~d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 192 PDPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEEec
Confidence 67889999999999999999987654
No 35
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.34 E-value=2.9e-12 Score=126.79 Aligned_cols=104 Identities=19% Similarity=0.287 Sum_probs=85.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CCCce-EEeecccCCC-CCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPAM-IGSFASKQLP-YPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er-----gl~~~-~~~~da~~Lp-fpd~sFDlV~~s~~ 326 (667)
...|||||||||..-.++--. +..+|+.+|+++.|-+++.++ ..++. ++.++.+++| .+++|+|+|+|..+
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv 154 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV 154 (252)
T ss_pred ccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence 356899999999887766533 456799999999998876543 33444 7889999999 89999999999998
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+.. ..++.+.|+|+.|+|||||++++.+++...
T Consensus 155 LCS-ve~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 155 LCS-VEDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred Eec-cCCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 554 578889999999999999999999987654
No 36
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.32 E-value=8.1e-12 Score=130.28 Aligned_cols=105 Identities=20% Similarity=0.183 Sum_probs=86.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
...+|||||||+|..+..+++.......|+++|.++.|++.|+++ +. ++.+..++++.+++++++||+|+++.+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v- 155 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV- 155 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc-
Confidence 347999999999998877766522335799999999999998864 33 456777888999999999999999866
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++.++...+++++.|+|||||+|++++...
T Consensus 156 ~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 156 INLSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred ccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 6777788889999999999999999987643
No 37
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.29 E-value=1.7e-11 Score=130.98 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=80.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH--c----CCCceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE--R----GLPAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e--r----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
.+++|||||||+|.++..++..+. ..|+|+|.|+.|+..+.. + ...+.+..++++.+|.. .+||+|+|..+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~gv 197 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTVFSMGV 197 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEEEEcch
Confidence 347999999999999999988864 368999999999865421 1 12445666778888865 48999999988
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
++| ..++..+|++++++|||||.|++.+..
T Consensus 198 L~H-~~dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 198 LYH-RKSPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred hhc-cCCHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 554 578889999999999999999998654
No 38
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.28 E-value=1.1e-12 Score=115.58 Aligned_cols=92 Identities=28% Similarity=0.360 Sum_probs=58.3
Q ss_pred EEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCceEEeecccCCC--CCCCCccEEEeccccccc
Q 005959 258 LDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLP--YPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 258 LDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~da~~Lp--fpd~sFDlV~~s~~ll~~ 330 (667)
||||||+|.++..++++. +...++++|+|+.|++.++++ . .............. ...++||+|+++.+ +||
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v-l~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNV-LHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-T-TS-
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhh-Hhh
Confidence 799999999999999874 678899999999999766554 1 12222322222221 12259999999988 555
Q ss_pred ccCHHHHHHHHHhcccCCeEE
Q 005959 331 DQKDGILLLEVDRVLKPGGYF 351 (667)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~L 351 (667)
.++...+++.+.++|||||.|
T Consensus 79 l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 LEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhHHHHHHHHHHHcCCCCCC
Confidence 588899999999999999986
No 39
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.27 E-value=3.2e-11 Score=121.42 Aligned_cols=100 Identities=16% Similarity=0.052 Sum_probs=81.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc-
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ- 332 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~- 332 (667)
..+|||||||+|.++..|++.. ....++|+|+|+.|++.|+++...+.+.++++.. |+++++||+|+++.+++|+.+
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEEEEECChhhhCCHH
Confidence 4689999999999999998762 2457999999999999998865556677778777 899999999999998666643
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+..++++++.|++ ++++++.+..
T Consensus 122 ~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 122 NLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred HHHHHHHHHHhhc--CcEEEEEEee
Confidence 2467999999998 5788887753
No 40
>PRK06922 hypothetical protein; Provisional
Probab=99.26 E-value=1.6e-11 Score=140.29 Aligned_cols=103 Identities=18% Similarity=0.136 Sum_probs=84.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCC--CCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lp--fpd~sFDlV~~s~~l 327 (667)
+.+|||||||+|.++..+++. .+...++++|.|+.|++.|+++ +.+..+.++|+..+| +++++||+|+++.++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~-~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEE-TEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 479999999999999888876 3557899999999999988765 344566778888888 888999999999875
Q ss_pred cccc------------cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 328 VDWD------------QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 328 l~~~------------~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+++. .+...+|+++.|+|||||.+++.+..
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 4442 23468999999999999999999864
No 41
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.25 E-value=5e-11 Score=125.80 Aligned_cols=98 Identities=15% Similarity=0.251 Sum_probs=77.8
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
.+|||||||+|.++..|++.| ..|+++|.|+.+++.+++ .++++.+...|....++ +++||+|++..++++.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g---~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLG---FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 589999999999999999886 368999999999987654 35666666667666555 6789999999874443
Q ss_pred c-cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 331 D-QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 331 ~-~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. ++...+++++.++|+|||++++...
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 3 2446799999999999999776543
No 42
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.24 E-value=6.9e-11 Score=117.59 Aligned_cols=117 Identities=18% Similarity=0.202 Sum_probs=90.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
+.+|||||||+|.++..++... ....|+++|.++.|++.|+++ ++ ++.+..+++..++. +++||+|+|...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~-- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV-- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc--
Confidence 5799999999999999988652 356799999999999877643 44 36678888888777 779999998742
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeec
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 390 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~ 390 (667)
.+...+++++.++|||||++++....... ..+..+++..+|.+..+
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~~~-------------~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRDPE-------------EEIAELPKALGGKVEEV 167 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCChH-------------HHHHHHHHhcCceEeee
Confidence 45678999999999999999998754221 23456667678876544
No 43
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.24 E-value=4.1e-11 Score=125.29 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=80.3
Q ss_pred CCCEEEEeCCCCch----HHHHHhhcCC----ceeEEEEecCCHHHHHHHHHcC--------C-----------------
Q 005959 253 GVRTILDIGCGYGS----FGAHLFSKEL----LTMCIANYEASGSQVQLTLERG--------L----------------- 299 (667)
Q Consensus 253 ~~~~VLDIGCGtG~----~t~~La~~g~----~~~sV~gvD~S~~ml~~A~erg--------l----------------- 299 (667)
.+.+|+|+|||+|. ++..+++... ....|+|+|+|+.|++.|++.- +
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 34699999999995 4555555422 2467999999999999998631 1
Q ss_pred -------CceEEeecccCCCCCCCCccEEEeccccccccc-CHHHHHHHHHhcccCCeEEEEEe
Q 005959 300 -------PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ-KDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 300 -------~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~-d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.+.+.+.|+...++++++||+|+|.++++++.+ +..+++++++++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 356777888888888889999999988665542 33579999999999999999964
No 44
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.24 E-value=3.6e-11 Score=121.48 Aligned_cols=99 Identities=28% Similarity=0.420 Sum_probs=81.1
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccccc
Q 005959 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 256 ~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
+|||||||+|.++..+++.. ....++++|+|+.+++.++++ ++ .+.+...|....|++ ++||+|++..+ ++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~-l~ 78 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEV-IH 78 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHH-HH
Confidence 69999999999999998863 335799999999999888764 33 345666777666765 48999999988 45
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+..+...+|+++.++|||||++++.++.
T Consensus 79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 79 HIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred hCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 5567889999999999999999999874
No 45
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.23 E-value=4.2e-11 Score=125.76 Aligned_cols=101 Identities=24% Similarity=0.356 Sum_probs=75.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
++.+|||||||.|.++.+++++. .+.|+++.+|+++.+.++++ |+. +.+...|..+++. +||.|++..+
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~---~fD~IvSi~~ 136 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG---KFDRIVSIEM 136 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESE
T ss_pred CCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC---CCCEEEEEec
Confidence 34899999999999999999982 35699999999999887644 543 4566667666543 8999999999
Q ss_pred ccccc-cCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+.|+. .+...+++++.++|||||.+++...+.
T Consensus 137 ~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 137 FEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp GGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred hhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 77765 455789999999999999999887654
No 46
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.21 E-value=1.5e-10 Score=116.98 Aligned_cols=104 Identities=25% Similarity=0.242 Sum_probs=87.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||||||+|.++..+++.+.....++++|.++.+++.++++. .++.+..+++..+++++++||+|+++.+
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~- 130 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG- 130 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc-
Confidence 479999999999999999887532467999999999999887752 2456777888888888889999999887
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++..+...++.++.++|+|||.+++.+...
T Consensus 131 l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 131 LRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred cccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 5666788899999999999999999887643
No 47
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.21 E-value=1.3e-10 Score=116.13 Aligned_cols=104 Identities=23% Similarity=0.271 Sum_probs=87.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
+..+|||+|||+|.++..+++.......++++|.++.+++.++++. ..+.+..+++..+++++++||+|+++.. ++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~-~~ 117 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFG-LR 117 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeee-eC
Confidence 3479999999999999999987543357999999999999887764 2456777888888888889999999877 56
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+..+...+++++.++|+|||++++.+..
T Consensus 118 ~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 118 NVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 6678889999999999999999998754
No 48
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.21 E-value=7.2e-11 Score=129.64 Aligned_cols=100 Identities=25% Similarity=0.322 Sum_probs=79.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCceEEeecccCCCCCCCCccEEEecccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
+.+|||||||+|.++..++++. ...|+++|+|++|++.|+++. +.+.+...+...+ +++||+|++..++.|..
T Consensus 168 g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg 242 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL---NGQFDRIVSVGMFEHVG 242 (383)
T ss_pred CCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc---CCCCCEEEEeCchhhCC
Confidence 3799999999999999998762 347999999999999998763 3445555565544 47899999998755543
Q ss_pred -cCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 332 -QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 332 -~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.+...+++++.++|||||++++.+...
T Consensus 243 ~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 243 PKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred hHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 334689999999999999999987653
No 49
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.20 E-value=4.2e-11 Score=120.18 Aligned_cols=103 Identities=22% Similarity=0.282 Sum_probs=82.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecc-cCCC--CCCCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFAS-KQLP--YPSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da-~~Lp--fpd~sFDlV~~s~ 325 (667)
..+|||||||+|.++..+++.. ....++++|.++.|++.|+++ +. ++.+.++++ +.++ +++++||+|++++
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 4789999999999999998763 446799999999999888753 32 466788887 7777 7788999999986
Q ss_pred ccccccc--------CHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 326 CGVDWDQ--------KDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 326 ~ll~~~~--------d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
. ..|.. ....+++++.++|||||+|+++....
T Consensus 120 ~-~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 120 P-DPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred C-CCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 5 33322 13579999999999999999987643
No 50
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.19 E-value=2.4e-11 Score=124.47 Aligned_cols=100 Identities=22% Similarity=0.284 Sum_probs=79.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC-------C----ceEEeecccCCCCCCCCccEEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL-------P----AMIGSFASKQLPYPSLSFDMLH 322 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl-------~----~~~~~~da~~Lpfpd~sFDlV~ 322 (667)
+++|||+|||+|.++..|++.| .+|+|+|.++.|++.|++..- + ..+.+.+++.+ .+.||+|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---ccccceee
Confidence 4789999999999999999987 458999999999999987621 1 11233333333 24599999
Q ss_pred ecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 323 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 323 ~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
|+.+ +++..++..++..+.+.|||||.+++++.....
T Consensus 164 csev-leHV~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 164 CSEV-LEHVKDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred eHHH-HHHHhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 9999 556788999999999999999999999876543
No 51
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.18 E-value=1.5e-10 Score=115.40 Aligned_cols=99 Identities=19% Similarity=0.289 Sum_probs=76.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH----HHHcCCCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~----A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
+.++||+|||.|..+.+|+++|+. |+++|.|+..++. |.+.++++.....|.....++ +.||+|++..++.+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 479999999999999999999865 8999999988854 445688888888888887776 58999999866444
Q ss_pred cccC-HHHHHHHHHhcccCCeEEEEEeC
Q 005959 330 WDQK-DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 330 ~~~d-~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
..++ ...++..+...++|||++++...
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 4433 35799999999999999998654
No 52
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.16 E-value=2.7e-10 Score=113.09 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=76.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
..+++||+|||.|.+|..|+.+ .-.++++|.|+..++.|++|- .++.+.+++.... .|+++||+|+++.++++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r---Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR---CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF-WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG---EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred ccceeEecCCCccHHHHHHHHh---hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC-CCCCCeeEEEEehHhHc
Confidence 3478999999999999999988 467999999999999999873 3466777776553 57889999999998666
Q ss_pred ccc--CHHHHHHHHHhcccCCeEEEEEeC
Q 005959 330 WDQ--KDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 330 ~~~--d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+.+ +...++..+...|+|||.|++...
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 643 335789999999999999999876
No 53
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.16 E-value=3.1e-10 Score=115.09 Aligned_cols=100 Identities=16% Similarity=0.004 Sum_probs=78.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH-HcCC----------------CceEEeecccCCCCC-C
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGL----------------PAMIGSFASKQLPYP-S 315 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~-ergl----------------~~~~~~~da~~Lpfp-d 315 (667)
..+|||+|||.|..+.+|+++|+. |+|+|+|+.+++.+. +.++ .+.+.++|...++.. .
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~G~~---V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQGHR---VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhCCCe---EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 369999999999999999999764 899999999998753 3332 355677887777643 3
Q ss_pred CCccEEEecccccccccCH-HHHHHHHHhcccCCeEEEEEeC
Q 005959 316 LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 316 ~sFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+.||.|+-..+++|..++. ..++..+.++|||||++++...
T Consensus 112 ~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 112 GPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 5799999887766655443 5699999999999998776654
No 54
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.16 E-value=1.1e-10 Score=115.58 Aligned_cols=100 Identities=24% Similarity=0.325 Sum_probs=83.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC-CCCCCCccEEEecccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-PYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-pfpd~sFDlV~~s~~ll~~~ 331 (667)
++.+|||+|||.|.+..+|.+. ..+...|+|++++.+..+.++|+++....++. .| .|++++||.|+++.+ +...
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~-gL~~f~d~sFD~VIlsqt-LQ~~ 88 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVARGVSVIQGDLDE-GLADFPDQSFDYVILSQT-LQAV 88 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHcCCCEEECCHHH-hHhhCCCCCccEEehHhH-HHhH
Confidence 3489999999999999999885 35678999999999999999999977665554 35 499999999999998 6666
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 332 QKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.+++.+|.|+.|+ |...+++.|+..
T Consensus 89 ~~P~~vL~EmlRV---gr~~IVsFPNFg 113 (193)
T PF07021_consen 89 RRPDEVLEEMLRV---GRRAIVSFPNFG 113 (193)
T ss_pred hHHHHHHHHHHHh---cCeEEEEecChH
Confidence 7889999999777 557888877543
No 55
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.15 E-value=2.4e-10 Score=119.72 Aligned_cols=129 Identities=21% Similarity=0.273 Sum_probs=95.2
Q ss_pred ccccccccc-cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH-
Q 005959 219 SFRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE- 296 (667)
Q Consensus 219 ~F~~~~~~y-d~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e- 296 (667)
.|....... +....-.+.+.+.+.+.+| ++|||||||.|.++.+++++. .+.|+|+++|++|.+.+++
T Consensus 45 yf~~~~~tL~eAQ~~k~~~~~~kl~L~~G--------~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r 114 (283)
T COG2230 45 YFEDPDMTLEEAQRAKLDLILEKLGLKPG--------MTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKR 114 (283)
T ss_pred EeCCCCCChHHHHHHHHHHHHHhcCCCCC--------CEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHH
Confidence 344433333 3334455667777777766 999999999999999999983 4679999999999987765
Q ss_pred ---cCCC--ceEEeecccCCCCCCCCccEEEecccccccc-cCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 297 ---RGLP--AMIGSFASKQLPYPSLSFDMLHCARCGVDWD-QKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 297 ---rgl~--~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+|++ +.+...| .+...+.||-|++..++.|+. .+...+|+.++++|+|||.+++.+.....
T Consensus 115 ~~~~gl~~~v~v~l~d---~rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 115 IAARGLEDNVEVRLQD---YRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred HHHcCCCcccEEEecc---ccccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 3655 3443333 343345699999999866665 34578999999999999999998876543
No 56
>PRK06202 hypothetical protein; Provisional
Probab=99.14 E-value=3.8e-10 Score=115.13 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=79.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhc----CCceeEEEEecCCHHHHHHHHHcC--CCceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~----g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
+..+|||||||+|.++..|++. + ....++++|+|+.|++.|+++. .+..+...++..+++++++||+|+|+.+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDG-LRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCC-CCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 4579999999999999888753 2 2357999999999999998763 2345556667778888889999999998
Q ss_pred ccccccCH--HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 327 GVDWDQKD--GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 327 ll~~~~d~--~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+|+.++. ..+++++.|+++ |.+++.+....
T Consensus 139 -lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 139 -LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred -eecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 4555453 479999999998 66677666543
No 57
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.14 E-value=2.6e-10 Score=114.10 Aligned_cols=103 Identities=25% Similarity=0.260 Sum_probs=83.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecc-cCCCCCCCCccEEEecccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS-KQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da-~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
...-|||||||+|..+..|.+.| ...+|+|+|+.|++.|.++-+...+...|+ +.+||..++||.|++..+ +.|.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G---h~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISA-vQWL 125 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG---HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISA-VQWL 125 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC---ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeee-eeee
Confidence 56789999999999999999887 347999999999999998766655444443 789999999999999865 6664
Q ss_pred -------cCH----HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 332 -------QKD----GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 332 -------~d~----~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.++ ..++..++.+|++|+..++.-...+
T Consensus 126 cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 126 CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred cccCccccChHHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 222 2478889999999999999876543
No 58
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.13 E-value=2.9e-10 Score=114.96 Aligned_cols=99 Identities=12% Similarity=0.016 Sum_probs=75.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC--------CCCCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp--------fpd~sFDlV~~s~ 325 (667)
..+|||||||+|.++..++++......|+++|+++ |. ...++.+.++|+...+ +.+++||+|+|+.
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~ 125 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDM 125 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCC
Confidence 47899999999999999998743445799999987 21 1134667778877753 6678999999986
Q ss_pred cccccccCH-----------HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 326 CGVDWDQKD-----------GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 326 ~ll~~~~d~-----------~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+ .++..++ ..+|.++.++|||||.|++.++...
T Consensus 126 ~-~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 126 A-PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred C-CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 5 4443221 3589999999999999999877543
No 59
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.12 E-value=1.1e-09 Score=99.24 Aligned_cols=98 Identities=19% Similarity=0.138 Sum_probs=74.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC-CCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||+|.++..++++. ....++++|.++.+++.+++. +. +..+...+... ++...++||+|++...
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~- 97 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS- 97 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc-
Confidence 3699999999999999999873 336799999999999887643 22 34555555543 3343468999999764
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. .....+++++.++|+|||+|++...
T Consensus 98 ~---~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 98 G---GLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred c---hhHHHHHHHHHHHcCCCCEEEEEec
Confidence 2 2235899999999999999998753
No 60
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.11 E-value=1.3e-09 Score=123.81 Aligned_cols=100 Identities=16% Similarity=0.223 Sum_probs=70.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||+|.++..++.. .....++++|.|+.+++.|+++ ++ .+.+..+|... ++++++||+|+|+.-.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~-~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCE-LPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-NIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHH-CCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-hCcCCCccEEEECCCC
Confidence 468999999999999998865 2346799999999999988765 33 24455555432 2345689999996321
Q ss_pred cc-------------c--------ccC----HHHHHHHHHhcccCCeEEEEEe
Q 005959 328 VD-------------W--------DQK----DGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 328 l~-------------~--------~~d----~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
+. + ..+ ...++.++.++|+|||.+++..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 11 0 011 1246778899999999999864
No 61
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.08 E-value=1.8e-09 Score=105.88 Aligned_cols=100 Identities=20% Similarity=0.179 Sum_probs=77.1
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
.+|||+|||+|.++..+++.+. .++++|.++.|++.++++ +..+.+..+|....+ .++||+|+++...++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~ 95 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFNPPYLPL 95 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEECCCCCCC
Confidence 6899999999999999998853 799999999999887754 445566666665443 4589999999764333
Q ss_pred ccC--------------------HHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 331 DQK--------------------DGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 331 ~~d--------------------~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.+. ...++.++.++|+|||.+++..+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 211 24579999999999999999876543
No 62
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.08 E-value=1.7e-10 Score=116.99 Aligned_cols=125 Identities=19% Similarity=0.230 Sum_probs=84.1
Q ss_pred cccccccc-cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC
Q 005959 220 FRSASLIF-DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 298 (667)
Q Consensus 220 F~~~~~~y-d~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg 298 (667)
|...+..| +....|.....+.+..... ..+.++|+|||+|..+..++++ ...|+++|.|++|++.|++.-
T Consensus 5 ~~~~a~~Y~~ARP~YPtdw~~~ia~~~~------~h~~a~DvG~G~Gqa~~~iae~---~k~VIatD~s~~mL~~a~k~~ 75 (261)
T KOG3010|consen 5 FDKQAADYLNARPSYPTDWFKKIASRTE------GHRLAWDVGTGNGQAARGIAEH---YKEVIATDVSEAMLKVAKKHP 75 (261)
T ss_pred ccccHHHHhhcCCCCcHHHHHHHHhhCC------CcceEEEeccCCCcchHHHHHh---hhhheeecCCHHHHHHhhcCC
Confidence 44445555 3335555444444432222 3458999999999777777766 356999999999999998653
Q ss_pred CCc------eEEeecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCe-EEEEEe
Q 005959 299 LPA------MIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGG-YFVWTS 355 (667)
Q Consensus 299 l~~------~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG-~Lvis~ 355 (667)
... .....+...|--.++|.|+|+|..| +||. |.+++++++.|+||+.| .+++=.
T Consensus 76 ~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa-~HWF-dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 76 PVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA-VHWF-DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred CcccccCCccccccccccccCCCcceeeehhhhh-HHhh-chHHHHHHHHHHcCCCCCEEEEEE
Confidence 211 1222222233334899999999999 8998 45789999999999977 555543
No 63
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.07 E-value=2e-09 Score=105.07 Aligned_cols=100 Identities=19% Similarity=0.277 Sum_probs=74.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||+|||+|.++..+++++ ....++++|.++.+++.+++. ++. +.+...|... +.++++||+|+|+.- +
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~-~~~~~~fD~Iv~NPP-~ 108 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE-ALPDGKFDLIVSNPP-F 108 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT-TCCTTCEEEEEE----S
T ss_pred CCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc-cccccceeEEEEccc-h
Confidence 3789999999999999999885 445699999999999888653 444 5565555433 344689999999965 3
Q ss_pred ccccC-----HHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 DWDQK-----DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ~~~~d-----~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+...+ ...++.+..+.|||||.|++...
T Consensus 109 ~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 109 HAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp BTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 33322 35789999999999999977654
No 64
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.07 E-value=9.1e-10 Score=108.92 Aligned_cols=96 Identities=24% Similarity=0.301 Sum_probs=75.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
+.+|||||||+|.++..++... ....|+++|.++.|++.+++ .++ ++.+..+++..++ .+++||+|+|.. +
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--~ 118 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--L 118 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh--h
Confidence 4799999999999999987653 34579999999999876653 244 4677888888774 357999999874 2
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.+...+++.+.++|+|||.+++...
T Consensus 119 ---~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 ---ASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ---hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 3456788999999999999998754
No 65
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.07 E-value=4.3e-10 Score=112.06 Aligned_cols=102 Identities=23% Similarity=0.287 Sum_probs=80.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC---CCCCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP---YPSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lp---fpd~sFDlV~~s~ 325 (667)
..+|||||||+|.++..++++. +...++++|.++.|++.|+++ ++ ++.+..+++..++ +++++||.|++++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 3689999999999999999874 456899999999999887643 33 5667778876654 5667999999886
Q ss_pred cccccccCH--------HHHHHHHHhcccCCeEEEEEeCC
Q 005959 326 CGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 326 ~ll~~~~d~--------~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
. .+|.... ..+++++.++|||||.|++.+..
T Consensus 96 p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 96 P-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred C-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 5 4443221 46899999999999999998754
No 66
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.05 E-value=1.6e-09 Score=109.02 Aligned_cols=95 Identities=18% Similarity=0.099 Sum_probs=72.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||||||+|.++..+++.......|+++|.++++++.|+++ +. .+.+..+|........++||+|++..+.
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 152 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAAA 152 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccCc
Confidence 37999999999999999887522234699999999999887653 33 2566777776654456799999998763
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.+ +..++.++|+|||+|++..
T Consensus 153 ~~-------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 153 ST-------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred ch-------hhHHHHHhcCcCcEEEEEE
Confidence 32 2357889999999998864
No 67
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.03 E-value=1.1e-09 Score=110.79 Aligned_cols=96 Identities=19% Similarity=0.271 Sum_probs=76.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----C--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
...+|||||||+|.++..+++.+ ..++++|+++.|++.|+++. . ++.+...++..++ ++||+|++..+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~~~~ 128 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVCMDV 128 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEEhhH
Confidence 35799999999999999999874 46899999999999887652 2 4567777777765 78999999988
Q ss_pred ccccc-cCHHHHHHHHHhcccCCeEEEEE
Q 005959 327 GVDWD-QKDGILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 327 ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis 354 (667)
++|+. ++...++.++.+++++++++.+.
T Consensus 129 l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 129 LIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred HHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 66654 23467999999999988776654
No 68
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.03 E-value=2.6e-09 Score=115.72 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=76.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
.+|||+|||+|.++..++++. +...++++|+++.|++.|++ .++...+...|... ..++.||+|+|+.. +|.
T Consensus 198 g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~--~~~~~fDlIvsNPP-FH~ 273 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS--DIKGRFDMIISNPP-FHD 273 (342)
T ss_pred CeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc--ccCCCccEEEECCC-ccC
Confidence 589999999999999999874 34579999999999988764 34555555555433 23578999999976 443
Q ss_pred c-----cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 331 D-----QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 331 ~-----~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. .....++.++.+.|||||.|++...
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2 2236799999999999999998765
No 69
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.01 E-value=2.3e-09 Score=109.08 Aligned_cols=102 Identities=18% Similarity=0.343 Sum_probs=82.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCC-CCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP-YPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lp-fpd~sFDlV~~s~~l 327 (667)
+..+|||||||+|.++..+++.+ ..++++|.++.+++.++++ +....+...+...++ ..+++||+|+++.+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~- 123 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM- 123 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH-
Confidence 34789999999999999998875 4589999999999888764 444556666666554 34579999999987
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++.+++..+|+++.++|+|||.++++.+..
T Consensus 124 l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 124 LEHVPDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 5556778889999999999999999987753
No 70
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.00 E-value=2.7e-09 Score=112.84 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=73.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
..+|||+|||+|.++..+++.+. ..++++|+++.+++.|+++ ++...+........+..+++||+|+++.. .
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~-~- 235 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANIL-A- 235 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecC-H-
Confidence 47999999999999999887753 4799999999999988764 33222221111123445679999999854 2
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+....++.++.++|||||+++++....
T Consensus 236 --~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 236 --EVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred --HHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 223578999999999999999998753
No 71
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.00 E-value=2e-09 Score=106.92 Aligned_cols=95 Identities=23% Similarity=0.294 Sum_probs=74.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccC-C-CCCCCCccEEEecccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-L-PYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~-L-pfpd~sFDlV~~s~~ll~~~ 331 (667)
..+|||||||+|.++..+++.. ...++++|.++++++.++++++. +..+++.. + ++++++||+|+|+.+ +++.
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~~~~--~~~~d~~~~l~~~~~~sfD~Vi~~~~-l~~~ 88 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVARGVN--VIQGDLDEGLEAFPDKSFDYVILSQT-LQAT 88 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHcCCe--EEEEEhhhcccccCCCCcCEEEEhhH-hHcC
Confidence 3689999999999999997653 23578999999999999877654 44556544 4 477889999999988 6667
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 332 QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+++..+++++.|++++ .+++.+
T Consensus 89 ~d~~~~l~e~~r~~~~---~ii~~p 110 (194)
T TIGR02081 89 RNPEEILDEMLRVGRH---AIVSFP 110 (194)
T ss_pred cCHHHHHHHHHHhCCe---EEEEcC
Confidence 8888999999887664 455544
No 72
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.00 E-value=2.8e-09 Score=107.88 Aligned_cols=110 Identities=15% Similarity=0.117 Sum_probs=80.9
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEe
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 305 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~ 305 (667)
......+.+.+...++ .+|||||||+|.++..+++.......|+++|.++.+++.++++ +. ++.+..
T Consensus 62 p~~~~~~~~~l~~~~g--------~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~ 133 (212)
T PRK13942 62 IHMVAIMCELLDLKEG--------MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIV 133 (212)
T ss_pred HHHHHHHHHHcCCCCc--------CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE
Confidence 3344455555554443 7999999999999999887632335799999999999888764 33 467777
Q ss_pred ecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 306 FASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 306 ~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
+|......+.+.||+|++.... + .....+.+.|||||.+++..
T Consensus 134 gd~~~~~~~~~~fD~I~~~~~~-~------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 134 GDGTLGYEENAPYDRIYVTAAG-P------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcccCCCcCCCcCEEEECCCc-c------cchHHHHHhhCCCcEEEEEE
Confidence 8877666667899999998652 2 12346777999999999854
No 73
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.99 E-value=3e-09 Score=107.52 Aligned_cols=108 Identities=20% Similarity=0.175 Sum_probs=78.7
Q ss_pred hHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeec
Q 005959 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFA 307 (667)
Q Consensus 233 y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~d 307 (667)
....+.+.+...+ ..+|||||||+|.++..|++.......|+++|.++.+++.|+++ ++ ++.+..+|
T Consensus 65 ~~~~~~~~l~~~~--------~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d 136 (215)
T TIGR00080 65 MVAMMTELLELKP--------GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD 136 (215)
T ss_pred HHHHHHHHhCCCC--------cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC
Confidence 3345555555433 37999999999999999988743345699999999999888754 33 45667777
Q ss_pred ccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 308 SKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 308 a~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
........++||+|++..... .+...+.+.|+|||++++..
T Consensus 137 ~~~~~~~~~~fD~Ii~~~~~~-------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 137 GTQGWEPLAPYDRIYVTAAGP-------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCcccCCCCEEEEcCCcc-------cccHHHHHhcCcCcEEEEEE
Confidence 765544456899999875522 23456889999999999864
No 74
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.99 E-value=4.1e-09 Score=107.34 Aligned_cols=98 Identities=15% Similarity=0.010 Sum_probs=75.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH-HcCC----------------CceEEeecccCCCCC-C
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGL----------------PAMIGSFASKQLPYP-S 315 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~-ergl----------------~~~~~~~da~~Lpfp-d 315 (667)
..+|||+|||.|..+..|+++|+ .|+|+|+|+.+++.+. ++++ .+.+.++|+..++.. .
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 36999999999999999999975 4899999999998763 4443 244567777776543 2
Q ss_pred CCccEEEecccccccccCH-HHHHHHHHhcccCCeEEEEE
Q 005959 316 LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 316 ~sFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis 354 (667)
..||+|+-..++++..++. ..++..+.++|+|||++++.
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 5899999887755554333 57999999999999975543
No 75
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.98 E-value=2.8e-09 Score=107.39 Aligned_cols=102 Identities=20% Similarity=0.329 Sum_probs=83.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCC-CCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP-SLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfp-d~sFDlV~~s~~ 326 (667)
...+|||+|||+|.++..+++.+ ..++++|.++.+++.++++ +. ++.+...++..++.. .++||+|++..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 35789999999999999998875 3489999999999888764 33 466666777766654 378999999987
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++..++..++.++.++|+|||.+++++...
T Consensus 122 -l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 122 -LEHVPDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred -HHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 6666788899999999999999999987643
No 76
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.98 E-value=2.6e-09 Score=112.42 Aligned_cols=102 Identities=18% Similarity=0.279 Sum_probs=79.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH--HHHc--CCCc--eEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL--TLER--GLPA--MIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~--A~er--gl~~--~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
.+++|||||||.|.++..|+.+|. ..|+|+|.+.-..-. +.++ +... ......++.+|. .++||+|+|..+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGV 191 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGV 191 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeee
Confidence 358999999999999999999974 468999998765422 1122 2222 233357888888 789999999999
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
++| ..++-..|.+++..|+|||.+++.+.+.
T Consensus 192 LYH-rr~Pl~~L~~Lk~~L~~gGeLvLETlvi 222 (315)
T PF08003_consen 192 LYH-RRSPLDHLKQLKDSLRPGGELVLETLVI 222 (315)
T ss_pred hhc-cCCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence 666 5678899999999999999999987654
No 77
>PLN03075 nicotianamine synthase; Provisional
Probab=98.98 E-value=3.7e-09 Score=111.85 Aligned_cols=102 Identities=14% Similarity=0.179 Sum_probs=80.2
Q ss_pred CCCEEEEeCCCCchHHHHHh-hcCCceeEEEEecCCHHHHHHHHHcC-----C--CceEEeecccCCCCCCCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLF-SKELLTMCIANYEASGSQVQLTLERG-----L--PAMIGSFASKQLPYPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La-~~g~~~~sV~gvD~S~~ml~~A~erg-----l--~~~~~~~da~~Lpfpd~sFDlV~~s 324 (667)
.+++|+|||||.|.++..++ ....+...++++|.++++++.|++.. + .+.|..+|+..++-..+.||+|+|.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 46899999999886654443 33346678999999999999887532 2 3667888877664345789999999
Q ss_pred ccccccc-cCHHHHHHHHHhcccCCeEEEEEe
Q 005959 325 RCGVDWD-QKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 325 ~~ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
++++|. ++..+++..+.+.|+|||+|++..
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 767774 677899999999999999999986
No 78
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.97 E-value=2.8e-10 Score=114.47 Aligned_cols=102 Identities=23% Similarity=0.324 Sum_probs=82.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeeccc-CCC-CCCCCccEEEeccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK-QLP-YPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~-~Lp-fpd~sFDlV~~s~~ll~~ 330 (667)
..+++||+|||||.++..|... ...++|+|+|++|++.|.++++--...++++. -++ ..+..||+|++..+ +.+
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV-l~Y 200 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV-LPY 200 (287)
T ss_pred ccceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH-HHh
Confidence 3689999999999999998766 44589999999999999999875544444444 233 45678999999988 555
Q ss_pred ccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 331 DQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.-+.+.++.-+...|+|||.|.||.-..
T Consensus 201 lG~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 201 LGALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred hcchhhHHHHHHHhcCCCceEEEEeccc
Confidence 6678889999999999999999997543
No 79
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.96 E-value=7.1e-09 Score=113.54 Aligned_cols=98 Identities=17% Similarity=0.190 Sum_probs=73.6
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC----CceEEeecccCCCCCCCCccEEEeccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL----PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl----~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
.+|||+|||+|.++..+++++ +...|+++|.|+.+++.|+++ +. .+.+...+... .+++++||+|+|+..
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsNPP 307 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 307 (378)
T ss_pred CeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc-cCCCCCEEEEEECcC
Confidence 689999999999999999874 456899999999999988754 22 23444444322 234568999999866
Q ss_pred ccccc---c--CHHHHHHHHHhcccCCeEEEEEe
Q 005959 327 GVDWD---Q--KDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 327 ll~~~---~--d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
+|.. . ...+++.++.++|+|||.|++..
T Consensus 308 -fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 -FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred -cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3322 1 12478999999999999999985
No 80
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.95 E-value=5.3e-09 Score=111.23 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=79.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
+..+|||||||+|.++..++++. +..+++++|. +.+++.++++ ++ .+.+..+|+...++++ +|+|+++++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~--~D~v~~~~~ 224 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE--ADAVLFCRI 224 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC--CCEEEeEhh
Confidence 34799999999999999999884 4567899997 6888777543 43 3456777776666654 799999888
Q ss_pred ccccccCH-HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+++|.++. ..+|++++++|+|||++++.+...
T Consensus 225 lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 225 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred hhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 66665433 579999999999999999998744
No 81
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.94 E-value=1.1e-08 Score=101.04 Aligned_cols=97 Identities=20% Similarity=0.194 Sum_probs=74.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||||||+|.++..++++. ....++++|.++.+++.|+++ ++ .+.+...+.. .+++ ++||+|++... .
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~-~~~D~v~~~~~-~ 107 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IELP-GKADAIFIGGS-G 107 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhcC-cCCCEEEECCC-c
Confidence 4799999999999999998874 446799999999999888653 22 3455555543 3343 58999999754 2
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.....++.++.++|+|||++++....
T Consensus 108 ---~~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 108 ---GNLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEEec
Confidence 23467899999999999999997653
No 82
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.94 E-value=2.4e-09 Score=103.66 Aligned_cols=77 Identities=18% Similarity=0.103 Sum_probs=66.5
Q ss_pred EEecCCHHHHHHHHHcC--------CCceEEeecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEE
Q 005959 282 ANYEASGSQVQLTLERG--------LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVW 353 (667)
Q Consensus 282 ~gvD~S~~ml~~A~erg--------l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvi 353 (667)
+|+|+|+.|++.|+++. .++.+.++|++++|+++++||+|++.++ +++.++...+|+|++|+|||||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~-l~~~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYG-LRNVVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecch-hhcCCCHHHHHHHHHHHcCcCeEEEE
Confidence 47999999999986542 1467888999999999999999999987 66667889999999999999999999
Q ss_pred EeCCCC
Q 005959 354 TSPLTN 359 (667)
Q Consensus 354 s~p~~~ 359 (667)
.+....
T Consensus 80 ~d~~~~ 85 (160)
T PLN02232 80 LDFNKS 85 (160)
T ss_pred EECCCC
Confidence 987653
No 83
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.92 E-value=7.4e-09 Score=110.22 Aligned_cols=106 Identities=13% Similarity=0.070 Sum_probs=75.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------CCCceEEeecccC-CCCCCCC----ccEEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------GLPAMIGSFASKQ-LPYPSLS----FDMLH 322 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er------gl~~~~~~~da~~-Lpfpd~s----FDlV~ 322 (667)
+.+|||+|||+|..+..|++.......++++|+|++|++.++++ ++++...++|+.. ++++... ..+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 46899999999999999998743246799999999999888664 2344556778765 4444432 23344
Q ss_pred eccccccccc--CHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 323 CARCGVDWDQ--KDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 323 ~s~~ll~~~~--d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+..+ +++.+ +...+|++++++|+|||.|++.......
T Consensus 144 ~gs~-~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~ 182 (301)
T TIGR03438 144 PGST-IGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKD 182 (301)
T ss_pred eccc-ccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCC
Confidence 4344 44332 2357999999999999999997765543
No 84
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.92 E-value=6.6e-09 Score=113.66 Aligned_cols=101 Identities=25% Similarity=0.347 Sum_probs=81.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCC--CCCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL--PYPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~L--pfpd~sFDlV~~s~~ 326 (667)
...+||||||+|.++..++++. +...++|+|+++.+++.|.++ ++ ++.+..+|+..+ .+++++||.|++++.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 3689999999999999999884 557899999999998776543 44 456777787654 578899999998865
Q ss_pred ccccccCH------HHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWDQKD------GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~~d~------~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
..|.... ..++.++.|+|+|||.+.+.+-
T Consensus 202 -dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 202 -VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred -CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 5554322 4799999999999999999764
No 85
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.91 E-value=5.3e-09 Score=108.35 Aligned_cols=98 Identities=21% Similarity=0.264 Sum_probs=69.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||+|||+|.++..+++.+.. .++++|+++.+++.|+++.....+. +...++..+.+||+|+|+.. . +
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~~~~~~--~~~~~~~~~~~fD~Vvani~-~---~ 190 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAELNGVE--LNVYLPQGDLKADVIVANIL-A---N 190 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHHcCCC--ceEEEccCCCCcCEEEEcCc-H---H
Confidence 3479999999999999988877643 5899999999999887652110000 00112222337999999743 1 2
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
....++.++.++|||||+++++....
T Consensus 191 ~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 191 PLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 23578999999999999999998753
No 86
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.91 E-value=3.5e-09 Score=95.64 Aligned_cols=100 Identities=25% Similarity=0.409 Sum_probs=78.1
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCC--CCCCCccEEEeccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLSFDMLHCARC 326 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lp--fpd~sFDlV~~s~~ 326 (667)
.+|||+|||+|.++..+++.+ ...++++|+++..++.++.+ +. ++.+.++|...+. +++++||+|+++--
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP 79 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP 79 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred CEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence 589999999999999999886 56799999999999888764 22 4677888877775 78899999999865
Q ss_pred ccccc-------cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWD-------QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~-------~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
..... .....+++++.++|||||.+++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 33221 1124789999999999999998765
No 87
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.90 E-value=1.1e-08 Score=109.56 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=67.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------CCceEEeecccCCCCCCCCccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQLPYPSLSFDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----------l~~~~~~~da~~Lpfpd~sFDlV~~ 323 (667)
+.+|||||||+|.++..+++.+ ..|+++|+|+.|++.|+++. ..+.+...|...+ +++||+|+|
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g---~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~ 218 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEG---AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC 218 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence 4799999999999999999885 36899999999999887762 1234555554433 578999999
Q ss_pred cccccccccCH-HHHHHHHHhcccCCeEEE
Q 005959 324 ARCGVDWDQKD-GILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 324 s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lv 352 (667)
..+++|+.++. ..+++.+.+ +.+||.++
T Consensus 219 ~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 219 LDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred cCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 99877765433 345666664 45666644
No 88
>PRK14967 putative methyltransferase; Provisional
Probab=98.90 E-value=1.6e-08 Score=102.79 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=74.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
..+|||+|||+|.++..+++.+. ..++++|.++.+++.++++ +.++.+...|... .+++++||+|+++.....
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR-AVEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh-hccCCCeeEEEECCCCCC
Confidence 37999999999999999988742 4789999999999877653 4555666666544 356679999999843121
Q ss_pred ccc--------------------CHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 330 WDQ--------------------KDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 330 ~~~--------------------d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
... ....++.++.++|||||.+++....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 111 0245788999999999999986543
No 89
>PRK04266 fibrillarin; Provisional
Probab=98.90 E-value=8.5e-09 Score=105.62 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=69.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCceEEeecccC----CCCCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQ----LPYPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~~~~~~~da~~----Lpfpd~sFDlV~~s~~ 326 (667)
..+|||+|||+|.++..+++.. ....|+++|.++.|++.+.++ ..++.+..+|+.. .+++ ++||+|++...
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v-~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d~~ 150 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIV-EEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQDVA 150 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEECCC
Confidence 4799999999999999998863 234799999999998754332 1245566666543 1233 46999997532
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. ......++.++.|+|||||.++++.+
T Consensus 151 -~--p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 151 -Q--PNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred -C--hhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 1 11224578999999999999999533
No 90
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.9e-08 Score=105.95 Aligned_cols=131 Identities=20% Similarity=0.279 Sum_probs=92.9
Q ss_pred cccccccccccc--cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH
Q 005959 216 EQISFRSASLIF--DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL 293 (667)
Q Consensus 216 ~~~~F~~~~~~y--d~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~ 293 (667)
..+.|.....+| +..+.--+.+.+.++...+ .+|||+|||.|.++..|++.. +...++.+|.+...++.
T Consensus 127 ~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~--------~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ 197 (300)
T COG2813 127 HELTFKTLPGVFSRDKLDKGSRLLLETLPPDLG--------GKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVES 197 (300)
T ss_pred CceEEEeCCCCCcCCCcChHHHHHHHhCCccCC--------CcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHH
Confidence 334566666666 3444445566777665444 489999999999999999985 46789999999999998
Q ss_pred HHHc----CCCceEEeecccCCCCCCCCccEEEecccccccccCH----HHHHHHHHhcccCCeEEEEEeC
Q 005959 294 TLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 294 A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~----~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|++. ++....+..+....+..+ +||+|+|+--++.-..-. .+++.+..+.|++||.|++...
T Consensus 198 ar~Nl~~N~~~~~~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 198 ARKNLAANGVENTEVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred HHHhHHHcCCCccEEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 8754 344322222333445555 999999997633222222 3789999999999999999876
No 91
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.89 E-value=1.3e-08 Score=102.80 Aligned_cols=94 Identities=23% Similarity=0.284 Sum_probs=70.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
+..+|||||||+|.++..|++.+ ..++++|.|+.|++.|+++ +. .+.+..++ ++..+++||+|++..+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~fD~v~~~~~ 136 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLAGNITFEVGD---LESLLGRFDTVVCLDV 136 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC---chhccCCcCEEEEcch
Confidence 34799999999999999999875 3489999999999988765 22 34555555 4555789999999988
Q ss_pred cccccc-CHHHHHHHHHhcccCCeEEE
Q 005959 327 GVDWDQ-KDGILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 327 ll~~~~-d~~~~L~Ei~RvLKPGG~Lv 352 (667)
++|+.+ +...+++++.+.+++++.+.
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 656542 33568888888776544433
No 92
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.88 E-value=1.2e-08 Score=86.83 Aligned_cols=96 Identities=26% Similarity=0.346 Sum_probs=74.9
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---C--CCceEEeecccCCCC-CCCCccEEEecccccc
Q 005959 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---G--LPAMIGSFASKQLPY-PSLSFDMLHCARCGVD 329 (667)
Q Consensus 256 ~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---g--l~~~~~~~da~~Lpf-pd~sFDlV~~s~~ll~ 329 (667)
+|||+|||+|.++..+++. ....++++|.++.+++.+++. + ....+...+...... ..++||+|++..+ ++
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~-~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPP-LH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccc-ee
Confidence 4899999999999999883 356799999999999877621 1 234455566655543 5578999999987 44
Q ss_pred c-ccCHHHHHHHHHhcccCCeEEEEE
Q 005959 330 W-DQKDGILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 330 ~-~~d~~~~L~Ei~RvLKPGG~Lvis 354 (667)
+ ......+++.+.+.|+|||.++++
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 4 556678999999999999999986
No 93
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.87 E-value=8.4e-09 Score=104.80 Aligned_cols=134 Identities=19% Similarity=0.255 Sum_probs=95.6
Q ss_pred ccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCC-ceeEEEEecCCHHHHHHHHHcC------C
Q 005959 227 FDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKEL-LTMCIANYEASGSQVQLTLERG------L 299 (667)
Q Consensus 227 yd~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~-~~~sV~gvD~S~~ml~~A~erg------l 299 (667)
|....-..+++-+++..... ...+|||||||.|.....+++-.. ....+.+.|.|+.+++..+++. .
T Consensus 51 fkdR~wL~~Efpel~~~~~~------~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~ 124 (264)
T KOG2361|consen 51 FKDRNWLLREFPELLPVDEK------SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRV 124 (264)
T ss_pred cchhHHHHHhhHHhhCcccc------ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhh
Confidence 33334444556666554332 234899999999999988887531 2378999999999999887653 1
Q ss_pred CceEEeecccC--CCCCCCCccEEEecccccccccCH-HHHHHHHHhcccCCeEEEEEeCCCChhhhhhh
Q 005959 300 PAMIGSFASKQ--LPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRN 366 (667)
Q Consensus 300 ~~~~~~~da~~--Lpfpd~sFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~ 366 (667)
.+.+..++... -|.+.+++|.|++.+++....++. ..++.+++++|||||.+++.|.+...+..+|-
T Consensus 125 ~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF 194 (264)
T KOG2361|consen 125 EAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF 194 (264)
T ss_pred cccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc
Confidence 22333333333 346778999999999866655444 57999999999999999999998877665543
No 94
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.87 E-value=1.9e-08 Score=100.39 Aligned_cols=100 Identities=21% Similarity=0.184 Sum_probs=75.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC-CCCCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-Lpfpd~sFDlV~~s~ 325 (667)
...+|||+|||+|.++..++.......+++++|.++.+++.++++ ++ ++.+...++.. ++..++.||+|++..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 347999999999999998876522345799999999999887654 32 34556666654 333346899999864
Q ss_pred cccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. ..+...++.++.++|||||++++...
T Consensus 120 ~----~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 120 G----SEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred C----cccHHHHHHHHHHHcCCCcEEEEEee
Confidence 2 24567899999999999999998655
No 95
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.5e-08 Score=107.21 Aligned_cols=100 Identities=22% Similarity=0.333 Sum_probs=73.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCC-CCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPS-LSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd-~sFDlV~~s~~l 327 (667)
++++|||+|||+|.++...++.|. ..+.|+|+++..++.|+++ +++..........+..+. +.||+|+|+-.+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence 458999999999999999999874 4689999999999888754 444211111111222333 599999999531
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+-...+..++.+.|||||++++|....
T Consensus 240 ----~vl~~La~~~~~~lkpgg~lIlSGIl~ 266 (300)
T COG2264 240 ----EVLVELAPDIKRLLKPGGRLILSGILE 266 (300)
T ss_pred ----HHHHHHHHHHHHHcCCCceEEEEeehH
Confidence 113478899999999999999998754
No 96
>PRK14968 putative methyltransferase; Provisional
Probab=98.84 E-value=6.1e-08 Score=94.59 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=74.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC---ceEEeecccCCCCCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~---~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
..+|||+|||+|.++..+++++ ..++++|.++.+++.++++ +.. +.+...|... ++.+++||+|+++..
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n~p 99 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFNPP 99 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEECCC
Confidence 4689999999999999999873 5689999999999887543 322 5555556544 355568999998754
Q ss_pred ccccc--------------------cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 327 GVDWD--------------------QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 327 ll~~~--------------------~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
..+.. .....+++++.++|||||.+++..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 22210 11245899999999999999987654
No 97
>PTZ00146 fibrillarin; Provisional
Probab=98.83 E-value=4e-08 Score=103.76 Aligned_cols=121 Identities=15% Similarity=0.103 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHH----HHHHHHHcCCCceEEee
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS----QVQLTLERGLPAMIGSF 306 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~----ml~~A~ergl~~~~~~~ 306 (667)
+.|...++..+..... .+...+..+|||+|||+|.++..+++..-..-.|+++|+++. +++.++++ .++.....
T Consensus 111 ~p~rSKlaa~i~~g~~-~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~ 188 (293)
T PTZ00146 111 NPFRSKLAAAIIGGVA-NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIE 188 (293)
T ss_pred CCcccHHHHHHHCCcc-eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEEC
Confidence 4444455544432222 122234579999999999999999987323357999999986 44555544 34555556
Q ss_pred cccC---CCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 307 ASKQ---LPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 307 da~~---Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|+.. ..+...+||+|++... . .++...++.++.++|||||+|++...
T Consensus 189 Da~~p~~y~~~~~~vDvV~~Dva-~--pdq~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 189 DARYPQKYRMLVPMVDVIFADVA-Q--PDQARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred CccChhhhhcccCCCCEEEEeCC-C--cchHHHHHHHHHHhccCCCEEEEEEe
Confidence 6542 2223458999999853 2 23334577799999999999999643
No 98
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.83 E-value=4.6e-10 Score=111.23 Aligned_cols=199 Identities=16% Similarity=0.180 Sum_probs=127.1
Q ss_pred ccccc-ccccccccccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHH
Q 005959 214 EEEQI-SFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ 292 (667)
Q Consensus 214 ek~~~-~F~~~~~~yd~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~ 292 (667)
.+..+ .|-+.++||-...+ ++.+++..... .+. ..+.++||+|+|.|..+..++.. ...|.+.+.|..|+.
T Consensus 77 s~TdING~lgrGsMFifSe~---QF~klL~i~~p-~w~-~~~~~lLDlGAGdGeit~~m~p~---feevyATElS~tMr~ 148 (288)
T KOG3987|consen 77 SQTDINGFLGRGSMFIFSEE---QFRKLLVIGGP-AWG-QEPVTLLDLGAGDGEITLRMAPT---FEEVYATELSWTMRD 148 (288)
T ss_pred hhhccccccccCceEEecHH---HHHHHHhcCCC-ccC-CCCeeEEeccCCCcchhhhhcch---HHHHHHHHhhHHHHH
Confidence 34444 88888888865544 55666655422 222 23579999999999999999865 345788999999999
Q ss_pred HHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccC-CeEEEEEeCCCChhhhhhhHHHHh
Q 005959 293 LTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKP-GGYFVWTSPLTNPQAFLRNKENQK 371 (667)
Q Consensus 293 ~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKP-GG~Lvis~p~~~~~~~lr~~e~~~ 371 (667)
..+.++-++.- +...--.+-+||+|.|.+. +.-..++.++|++++.+|+| .|..+++-..+.....-.+ ...
T Consensus 149 rL~kk~ynVl~----~~ew~~t~~k~dli~clNl-LDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N--~~g 221 (288)
T KOG3987|consen 149 RLKKKNYNVLT----EIEWLQTDVKLDLILCLNL-LDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETN--TSG 221 (288)
T ss_pred HHhhcCCceee----ehhhhhcCceeehHHHHHH-HHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecC--CCC
Confidence 99888755432 2222223447999999877 66667888999999999999 8999887655443111001 123
Q ss_pred hhhhhhhhhhccceEEeeccCceEEEeecccccccccCCCCCCCCcCCCCCCCCCCccccc
Q 005959 372 RWNFVRDFVENLCWELVSQQDETVVWKKTSKASCYSSRKPGSGPSICSKGNDVESPYYRPL 432 (667)
Q Consensus 372 ~W~~ie~l~~~~~W~ll~~~~~~~IwqK~~~~~C~~~R~~~~~p~lC~~~~d~~~~wY~~l 432 (667)
.|.+..++.+..+-....+. +-+.....+..|..-.....|++|+ +|++..+|+-.
T Consensus 222 ~~~rPdn~Le~~Gr~~ee~v---~~~~e~lr~~g~~veawTrlPYLCE--GDm~ns~Y~L~ 277 (288)
T KOG3987|consen 222 LPLRPDNLLENNGRSFEEEV---ARFMELLRNCGYRVEAWTRLPYLCE--GDMHNSFYWLI 277 (288)
T ss_pred CcCCchHHHHhcCccHHHHH---HHHHHHHHhcCchhhhhhcCCeecc--cccccceEEec
Confidence 45555555544433221111 1111111122333345566899999 88999999843
No 99
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.82 E-value=3e-08 Score=98.11 Aligned_cols=99 Identities=16% Similarity=0.046 Sum_probs=70.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC--------CCCCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp--------fpd~sFDlV~~s 324 (667)
.+.+|||+|||+|.++..++++......++++|+++.+ ....+.+.++++...+ +++++||+|++.
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~ 105 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSD 105 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEcC
Confidence 34799999999999999998774344569999999865 1123456666665543 456789999986
Q ss_pred cccc---cccc-------CHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 325 RCGV---DWDQ-------KDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 325 ~~ll---~~~~-------d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.+.. +|.. ....++.++.++|+|||++++..+.
T Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 106 AAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 4311 1111 1257899999999999999997653
No 100
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.80 E-value=6e-08 Score=104.49 Aligned_cols=102 Identities=21% Similarity=0.154 Sum_probs=79.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEecccc-
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCG- 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~sFDlV~~s~~l- 327 (667)
+.+|||+|||+|.++..++..+ ..++++|.++.|++.++++ ++. +.+..+|+.++|+++++||+|+++.-.
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCc
Confidence 3789999999999988877654 4689999999999877644 433 467788999999988999999996320
Q ss_pred ----ccc--c-cCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 ----VDW--D-QKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 ----l~~--~-~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
... . +....++.++.++|||||++++..+..
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 110 1 113679999999999999999987743
No 101
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.79 E-value=5.4e-08 Score=99.55 Aligned_cols=101 Identities=20% Similarity=0.319 Sum_probs=75.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||+|||+|.++..+++.. ....++++|.++.+++.+++. ++. +.+..++... ++++++||+|+|+....
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcCCceeEEEECCCCC
Confidence 3589999999999999999863 345799999999999888653 443 5667777654 46678999999964311
Q ss_pred c------cccC-------------------HHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 D------WDQK-------------------DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ~------~~~d-------------------~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. +..+ ...++.++.++|+|||.+++...
T Consensus 166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 1 1000 12578899999999999999753
No 102
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.78 E-value=8.7e-09 Score=103.68 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=96.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
...++|||||.|.....|..++ +..++-+|.|..|++.++.- ++.....+.|.+.|+|.+++||+|+++.. +||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSls-lHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLS-LHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhh-hhh
Confidence 4679999999999999999887 44688999999999988654 44555677899999999999999999977 999
Q ss_pred ccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhH
Q 005959 331 DQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK 367 (667)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~ 367 (667)
..+.+..+..++..|||+|.|+-+-.....+.++|-.
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~s 186 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCS 186 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHH
Confidence 9999999999999999999999998888777666543
No 103
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.77 E-value=7.2e-08 Score=97.09 Aligned_cols=93 Identities=19% Similarity=0.090 Sum_probs=69.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||||||+|.++..|++.. ..++++|.++.+++.++++ ++ ++.+..++......+.++||+|++..+ .
T Consensus 79 ~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~-~ 154 (212)
T PRK00312 79 GDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA-A 154 (212)
T ss_pred CCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC-c
Confidence 4799999999999999888763 3689999999999888754 33 355666665433223478999999865 2
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+ .+..++.+.|+|||.+++...
T Consensus 155 ~------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 155 P------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred h------hhhHHHHHhcCCCcEEEEEEc
Confidence 2 234567899999999998765
No 104
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.76 E-value=1.9e-08 Score=106.85 Aligned_cols=98 Identities=20% Similarity=0.277 Sum_probs=71.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
++.+|||||||+|.++...++.|. ..|+++|+++.+++.|+++ ++...+.... ......+.||+|+++-. .
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA--~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~--~~~~~~~~~dlvvANI~-~ 235 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGA--KKVVAIDIDPLAVEAARENAELNGVEDRIEVSL--SEDLVEGKFDLVVANIL-A 235 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTB--SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC--TSCTCCS-EEEEEEES--H
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC--CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE--ecccccccCCEEEECCC-H
Confidence 347999999999999999999874 4689999999999887654 5554443222 22334589999999854 1
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+-...++..+.++|+|||+|++|....
T Consensus 236 ---~vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 236 ---DVLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp ---HHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred ---HHHHHHHHHHHHhhCCCCEEEEccccH
Confidence 123468888999999999999998754
No 105
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.74 E-value=7.9e-08 Score=95.69 Aligned_cols=98 Identities=20% Similarity=0.145 Sum_probs=71.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC-CCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||+|.++..+++.. ....++++|.++.+++.++++ ++ ++.+..+++.. ++.....+|.|+...
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~-- 117 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG-- 117 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC--
Confidence 4799999999999999988653 346799999999999888753 33 34566666543 222223467765432
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
..+...++.++.++|+|||++++..+.
T Consensus 118 ---~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 118 ---GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred ---CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 234568999999999999999999764
No 106
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.70 E-value=1.6e-07 Score=96.11 Aligned_cols=100 Identities=15% Similarity=-0.017 Sum_probs=81.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH-----------------cCCCceEEeecccCCCCC--
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE-----------------RGLPAMIGSFASKQLPYP-- 314 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e-----------------rgl~~~~~~~da~~Lpfp-- 314 (667)
..+||+.|||.|.-+.+|+++|+. |+|+|+|+..++.+.+ ++..+.+.++|...++..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~~---V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGVK---VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCCc---EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 479999999999999999999864 8999999999988654 234567788888888642
Q ss_pred -CCCccEEEecccccccccCH-HHHHHHHHhcccCCeEEEEEeC
Q 005959 315 -SLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 315 -d~sFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.+.||+|+=..+++++.++. .+..+.+.++|+|||.+++...
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 25899998776766665544 5799999999999999988765
No 107
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.69 E-value=1.7e-07 Score=99.15 Aligned_cols=101 Identities=17% Similarity=0.139 Sum_probs=73.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||+|.++..++++. ....++++|+|+.+++.|+++ ++ .+.+..+|+.. ++++++||+|+|+--.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA-ALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh-ccCCCCccEEEECCCC
Confidence 4689999999999999999863 345799999999999888754 44 35566667533 3455689999997211
Q ss_pred c------------cccc------------CHHHHHHHHHhcccCCeEEEEEeC
Q 005959 328 V------------DWDQ------------KDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 328 l------------~~~~------------d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. ++.+ ....++.++.++|+|||++++...
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 0000 114578899999999999998765
No 108
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.68 E-value=1.2e-07 Score=105.90 Aligned_cols=106 Identities=18% Similarity=0.288 Sum_probs=78.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCC--CCCCCccEEEecc-
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLP--YPSLSFDMLHCAR- 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lp--fpd~sFDlV~~s~- 325 (667)
++.+|||+|||+|..+..+++... ...|+++|.++.+++.++++ ++.+.+..+|+..++ ++.++||.|++..
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 347999999999999999998742 25799999999999877654 555667777877654 3467899999532
Q ss_pred ---cc-c------ccccC----------HHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 326 ---CG-V------DWDQK----------DGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 326 ---~l-l------~~~~d----------~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.. + .|... ...+|.++.++|||||++++++....
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 10 1 11111 13689999999999999999986543
No 109
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.67 E-value=9.1e-08 Score=93.64 Aligned_cols=103 Identities=22% Similarity=0.307 Sum_probs=79.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCCC--ceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl~--~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||.|.+...|++.+++. ..+|+|.|+.+++.|+ .++.+ +.|.++|+..-.+..+.||+|+--..+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~-~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~ 146 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQS-KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL 146 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCC-CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence 3499999999999999999998763 3899999999997764 34554 678888988777888899999854331
Q ss_pred --cccccC-----HHHHHHHHHhcccCCeEEEEEeCC
Q 005959 328 --VDWDQK-----DGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 328 --l~~~~d-----~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+...++ +..++..+.+.|+|||+|+|..-+
T Consensus 147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN 183 (227)
T KOG1271|consen 147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN 183 (227)
T ss_pred eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC
Confidence 111111 134788899999999999998764
No 110
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.66 E-value=2e-07 Score=103.96 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=77.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceE--EeecccCCCC--CCCCccEEEec-
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMI--GSFASKQLPY--PSLSFDMLHCA- 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~--~~~da~~Lpf--pd~sFDlV~~s- 324 (667)
+.+|||+|||+|..+..+++.. ....++++|.++.+++.++++ |+.+.+ ..++....++ ++++||.|++.
T Consensus 239 g~~VLDlcag~G~kt~~la~~~-~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 4799999999999999998863 245799999999999877544 555333 4455544443 56789999952
Q ss_pred ---c-cccccccC----------------HHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 325 ---R-CGVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 325 ---~-~ll~~~~d----------------~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
. ..++..++ ...+|.++.++|||||+|++++.....
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 2 22222222 246899999999999999999876543
No 111
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.65 E-value=1.9e-07 Score=100.46 Aligned_cols=96 Identities=17% Similarity=0.067 Sum_probs=71.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||||||+|.++..+++.......|+++|.++.+++.|+++ +. ++.+..+|....+...++||+|++... .
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g-~ 159 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG-V 159 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCc-h
Confidence 37999999999999999987632223589999999999887653 43 355667776666555578999998754 2
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. .....+.+.|+|||.+++...
T Consensus 160 ~------~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 160 D------EVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred H------HhHHHHHHhcCCCCEEEEEeC
Confidence 1 223457789999999988653
No 112
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.64 E-value=1.3e-07 Score=91.98 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=72.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
..+|||||||+|.++..+++++ ..++++|.++.+++.++++. .++.+..+|+..+++++.+||.|+++.- ++.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~vi~n~P-y~~ 89 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKVVGNLP-YNI 89 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEEEECCC-ccc
Confidence 3689999999999999999883 46899999999999887763 2466788899999888878999999854 443
Q ss_pred ccCHHHHHHHHHhc--ccCCeEEEEEe
Q 005959 331 DQKDGILLLEVDRV--LKPGGYFVWTS 355 (667)
Q Consensus 331 ~~d~~~~L~Ei~Rv--LKPGG~Lvis~ 355 (667)
. ...+..+... +.++|.+++..
T Consensus 90 ~---~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 90 S---TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred H---HHHHHHHHhcCCCcceEEEEEEH
Confidence 2 2333333322 45888888864
No 113
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.63 E-value=2.1e-07 Score=96.86 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=72.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----CCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----LPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg-----l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+|||+|||+|.++..++... ....++++|+++.+++.|+++. .++.+...|... ++++++||+|+++.-..
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE-PLPGGRFDLIVSNPPYI 186 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC-cCCCCceeEEEECCCcC
Confidence 4689999999999999998874 3467999999999999887652 245566666532 33457999999963211
Q ss_pred cc------c-------------------cCHHHHHHHHHhcccCCeEEEEEe
Q 005959 329 DW------D-------------------QKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 329 ~~------~-------------------~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.. . .....++.++.++|+|||++++..
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 10 0 112457888899999999999954
No 114
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.62 E-value=9.9e-08 Score=102.99 Aligned_cols=103 Identities=26% Similarity=0.297 Sum_probs=72.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------------CCceEEeecccC------C
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------------LPAMIGSFASKQ------L 311 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------------l~~~~~~~da~~------L 311 (667)
...+|||||||.|.-..-....+ +..++|+|++...|+.|++|. ..+.+..+|... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 45799999999888766666664 557999999999999998774 123345554432 2
Q ss_pred CCCCCCccEEEecccccccccCH---HHHHHHHHhcccCCeEEEEEeCC
Q 005959 312 PYPSLSFDMLHCARCGVDWDQKD---GILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 312 pfpd~sFDlV~~s~~ll~~~~d~---~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+.....||+|-|-+++++..... ..+|..+...|+|||+|+.+.|.
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 22235999999999955555544 35999999999999999999884
No 115
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.62 E-value=2.2e-07 Score=93.33 Aligned_cols=142 Identities=21% Similarity=0.337 Sum_probs=92.5
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHH----HHHHcCCC----ceEEeecccCCCC------CCCCccEE
Q 005959 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ----LTLERGLP----AMIGSFASKQLPY------PSLSFDML 321 (667)
Q Consensus 256 ~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~----~A~ergl~----~~~~~~da~~Lpf------pd~sFDlV 321 (667)
+|||||||||..+.+++++ ++.....+.|..+..+. ...+.+.+ .....+.....|. ..++||+|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 6999999999999999987 56677888888877642 22333332 1222222222333 35699999
Q ss_pred EecccccccccC--HHHHHHHHHhcccCCeEEEEEeCCCCh-----------hhhhhhHH---HHhhhhhhhhhhhccce
Q 005959 322 HCARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLTNP-----------QAFLRNKE---NQKRWNFVRDFVENLCW 385 (667)
Q Consensus 322 ~~s~~ll~~~~d--~~~~L~Ei~RvLKPGG~Lvis~p~~~~-----------~~~lr~~e---~~~~W~~ie~l~~~~~W 385 (667)
+|.++ +|..+- .+.+|+.+.++|+|||.|++..|.... ..+++... ...+.+.+..++...++
T Consensus 107 ~~~N~-lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 107 FCINM-LHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eehhH-HHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 99998 665533 357999999999999999999886532 11222111 11223567777888887
Q ss_pred EEeecc-----CceEEEee
Q 005959 386 ELVSQQ-----DETVVWKK 399 (667)
Q Consensus 386 ~ll~~~-----~~~~IwqK 399 (667)
++.... ..+.||+|
T Consensus 186 ~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 186 ELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred ccCcccccCCCCeEEEEeC
Confidence 766542 34566664
No 116
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.62 E-value=2.7e-07 Score=103.15 Aligned_cols=108 Identities=23% Similarity=0.182 Sum_probs=79.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC----CCCCCccEEEe
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP----YPSLSFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lp----fpd~sFDlV~~ 323 (667)
++.+|||+|||+|..+..+++..-....|+++|.++.+++.++++ |+ ++.+..+|+..++ +..++||.|++
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~ 331 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILL 331 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEE
Confidence 347999999999999999988632345799999999999877643 44 3567777877766 45678999996
Q ss_pred c----c-cccccccC----------------HHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 324 A----R-CGVDWDQK----------------DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 324 s----~-~ll~~~~d----------------~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
. . ..++..++ ...+|.++.++|||||+++.++.....
T Consensus 332 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~ 389 (434)
T PRK14901 332 DAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP 389 (434)
T ss_pred eCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 3 1 11222222 246899999999999999999865543
No 117
>PRK00811 spermidine synthase; Provisional
Probab=98.62 E-value=2.6e-07 Score=97.65 Aligned_cols=102 Identities=18% Similarity=0.095 Sum_probs=75.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----------CCceEEeecccC-CCCCCCCccEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----------LPAMIGSFASKQ-LPYPSLSFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----------l~~~~~~~da~~-Lpfpd~sFDlV 321 (667)
.+.+||+||||+|.++..++++. ...+|+++|+++.+++.|++.- .++.+...|+.. +...+++||+|
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45799999999999999998762 3457999999999999987641 234555666543 23346789999
Q ss_pred EecccccccccC----HHHHHHHHHhcccCCeEEEEEeC
Q 005959 322 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 322 ~~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
++... -++.+. ...+++.+.+.|+|||.+++...
T Consensus 155 i~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 155 IVDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred EECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 98643 232222 14688999999999999998644
No 118
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.62 E-value=1.9e-07 Score=93.71 Aligned_cols=112 Identities=17% Similarity=0.234 Sum_probs=70.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d 333 (667)
...|-|+|||.+.++..+.+ + ..|...|.-.. +..+..+|+.++|+++++.|++++..+++ ..+
T Consensus 73 ~~viaD~GCGdA~la~~~~~-~---~~V~SfDLva~----------n~~Vtacdia~vPL~~~svDv~VfcLSLM--GTn 136 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPN-K---HKVHSFDLVAP----------NPRVTACDIANVPLEDESVDVAVFCLSLM--GTN 136 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S-------EEEEESS-S----------STTEEES-TTS-S--TT-EEEEEEES-----SS-
T ss_pred CEEEEECCCchHHHHHhccc-C---ceEEEeeccCC----------CCCEEEecCccCcCCCCceeEEEEEhhhh--CCC
Confidence 46899999999999977642 2 34566676431 23466679999999999999999876643 467
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeecc
Q 005959 334 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 391 (667)
Q Consensus 334 ~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~~ 391 (667)
...++.|..|+|||||.|.|++..... ..-.......+.++++...+.
T Consensus 137 ~~~fi~EA~RvLK~~G~L~IAEV~SRf----------~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 137 WPDFIREANRVLKPGGILKIAEVKSRF----------ENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEGGG-----------S-HHHHHHHHHCTTEEEEEEE
T ss_pred cHHHHHHHHheeccCcEEEEEEecccC----------cCHHHHHHHHHHCCCeEEecc
Confidence 889999999999999999999874322 111233445677888888764
No 119
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.59 E-value=6.6e-07 Score=98.81 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=72.9
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceEEeecccCCCCC-CCCccEEEecccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMIGSFASKQLPYP-SLSFDMLHCARCGVD 329 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~~~~da~~Lpfp-d~sFDlV~~s~~ll~ 329 (667)
.+|||+|||+|.++..++... ....++++|.|+.|++.|+++ +.++.+.++|.....++ .++||+|+|+.-.+.
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCCC
Confidence 589999999999999988652 346799999999999888754 44566777776543332 458999999753211
Q ss_pred cc--------------------cC----HHHHHHHHHhcccCCeEEEEEeC
Q 005959 330 WD--------------------QK----DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 330 ~~--------------------~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
-. ++ ...++.++.+.|+|||.+++...
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 00 01 12567777889999999987654
No 120
>PHA03411 putative methyltransferase; Provisional
Probab=98.57 E-value=3.3e-07 Score=96.07 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=76.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d 333 (667)
..+|||+|||+|.++..++.+. ....|+++|+++.|++.++++...+.+.+.|+..+.. +++||+|+++....+....
T Consensus 65 ~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~-~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES-NEKFDVVISNPPFGKINTT 142 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc-cCCCcEEEEcCCccccCch
Confidence 3689999999999999887752 2357999999999999998875567778888877653 4689999998764442211
Q ss_pred -------------------HHHHHHHHHhcccCCeEEEEE
Q 005959 334 -------------------DGILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 334 -------------------~~~~L~Ei~RvLKPGG~Lvis 354 (667)
...++....++|+|+|.+.+.
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 135677888999999987766
No 121
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.57 E-value=1.3e-07 Score=95.89 Aligned_cols=111 Identities=18% Similarity=0.140 Sum_probs=77.4
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEe
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 305 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~ 305 (667)
......+.+.+...++ .+|||||||+|.+++.|+...-....|+++|..+..++.|+++ +. ++.+..
T Consensus 58 P~~~a~~l~~L~l~pg--------~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~ 129 (209)
T PF01135_consen 58 PSMVARMLEALDLKPG--------DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV 129 (209)
T ss_dssp HHHHHHHHHHTTC-TT---------EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred HHHHHHHHHHHhcCCC--------CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence 5556667777776665 8999999999999999997633445689999999999888765 44 566777
Q ss_pred ecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 306 FASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 306 ~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+|....--....||.|++..+ .. .-+ ..+.+.|++||++++-.-
T Consensus 130 gdg~~g~~~~apfD~I~v~~a-~~--~ip----~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 130 GDGSEGWPEEAPFDRIIVTAA-VP--EIP----EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp S-GGGTTGGG-SEEEEEESSB-BS--S------HHHHHTEEEEEEEEEEES
T ss_pred cchhhccccCCCcCEEEEeec-cc--hHH----HHHHHhcCCCcEEEEEEc
Confidence 775443334568999999866 32 112 357778999999998654
No 122
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.57 E-value=3.2e-07 Score=96.86 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=73.9
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEecccc-
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG- 327 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sFDlV~~s~~l- 327 (667)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ ++. +.+..+|... ++++++||+|+++.-.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 589999999999999999863 346799999999999888754 343 5666666543 3455589999997211
Q ss_pred -----------ccccc------------CHHHHHHHHHhcccCCeEEEEEeC
Q 005959 328 -----------VDWDQ------------KDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 328 -----------l~~~~------------d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
..+.+ ....++.++.+.|+|||++++...
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 11111 234688899999999999988765
No 123
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.57 E-value=3.1e-07 Score=98.31 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=73.4
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+|||+|||+|.++..++... ....++++|+|+.+++.|+++ ++ .+.+..+|+.. ++++++||+|+|+--.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA-ALPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh-hCCCCCccEEEECCCCC
Confidence 689999999999999998763 446799999999999888754 43 35667677533 23456899999973111
Q ss_pred ------------cccc------------CHHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 ------------DWDQ------------KDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ------------~~~~------------d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
++.+ ....++.++.++|+|||.+++...
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1111 114678999999999999998644
No 124
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.56 E-value=2.8e-07 Score=103.33 Aligned_cols=107 Identities=18% Similarity=0.228 Sum_probs=77.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEe----
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHC---- 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~sFDlV~~---- 323 (667)
++.+|||+|||+|..+..+++.......|+++|.++.+++.++++ |+. +.+.+.|+..++ ++++||+|++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pc 328 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPDAILLDAPC 328 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCC
Confidence 347999999999999988887522234799999999999877643 543 566777777665 5578999995
Q ss_pred cccc-c------cccc----------CHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 324 ARCG-V------DWDQ----------KDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 324 s~~l-l------~~~~----------d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+... + .|.. ....+|.++.++|||||++++++.....
T Consensus 329 sg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~ 382 (445)
T PRK14904 329 TGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEP 382 (445)
T ss_pred CCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence 2211 1 0111 1235899999999999999999876643
No 125
>PRK04457 spermidine synthase; Provisional
Probab=98.56 E-value=3.9e-07 Score=95.34 Aligned_cols=103 Identities=14% Similarity=0.074 Sum_probs=74.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------CCceEEeecccC-CCCCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------LPAMIGSFASKQ-LPYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg------l~~~~~~~da~~-Lpfpd~sFDlV~~s~ 325 (667)
.+.+|||||||+|.++..+++.. +...++++|+++++++.|++.. .++.+..+|+.. +.-..++||+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 35789999999999999998763 5678999999999999998752 234556666533 222236899999863
Q ss_pred cc-ccccc--CHHHHHHHHHhcccCCeEEEEEeC
Q 005959 326 CG-VDWDQ--KDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 326 ~l-l~~~~--d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.- ..... ....+++++.++|+|||.+++...
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 10 11111 125799999999999999999654
No 126
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.56 E-value=3e-07 Score=95.05 Aligned_cols=103 Identities=20% Similarity=0.256 Sum_probs=78.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--CCceEEeecccCCC--CCCCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQLP--YPSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g--l~~~~~~~da~~Lp--fpd~sFDlV~~s~ 325 (667)
..+|||+|||+|..+..++++- ....++++|..+.+.+.|++. + ..+.+.++|+..+. ....+||+|+|+-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 5899999999999999999883 337899999999999998764 1 23556777776665 3345799999985
Q ss_pred cccccc-----------------cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 326 CGVDWD-----------------QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 326 ~ll~~~-----------------~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
-.+.-. -+.+.+++-..++|||||++.+.-+.
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 322211 12346788899999999999998763
No 127
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.52 E-value=6.1e-07 Score=100.29 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=78.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCC-CCCCCccEEEecc--
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLHCAR-- 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lp-fpd~sFDlV~~s~-- 325 (667)
+.+|||+|||+|..|.++++..-....|+++|.++.+++.++++ |+. +.+...|+..++ +.+++||.|++.-
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPC 317 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPC 317 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEECCCC
Confidence 47899999999999999987632345799999999999877644 443 456777877776 5567899999631
Q ss_pred --c-cccccc----------------CHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 326 --C-GVDWDQ----------------KDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 326 --~-ll~~~~----------------d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
. .+...+ ...++|.++.+.|||||++++++.....
T Consensus 318 sg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 318 TSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred CCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 1 111111 1245789999999999999999876543
No 128
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.50 E-value=5.2e-07 Score=92.54 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=81.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
...+|||||+|.|.++..++++. +...++..|. +..++.+++ ...+.+..+|.. -++|. +|+++..+++++|.+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d 173 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFF-DPLPV--ADVYLLRHVLHDWSD 173 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH-TTTEEEEES-TT-TCCSS--ESEEEEESSGGGS-H
T ss_pred CccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc-ccccccccccHH-hhhcc--ccceeeehhhhhcch
Confidence 45789999999999999999884 5678889998 778888877 557778888876 66776 999999999888875
Q ss_pred CH-HHHHHHHHhcccCC--eEEEEEeCCCCh
Q 005959 333 KD-GILLLEVDRVLKPG--GYFVWTSPLTNP 360 (667)
Q Consensus 333 d~-~~~L~Ei~RvLKPG--G~Lvis~p~~~~ 360 (667)
+. ..+|+++++.|+|| |.++|.++....
T Consensus 174 ~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 174 EDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp HHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 44 57999999999999 999999876543
No 129
>PRK01581 speE spermidine synthase; Validated
Probab=98.50 E-value=6.9e-07 Score=96.98 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=74.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------------CCCceEEeecccC-CCCCCCCcc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------------GLPAMIGSFASKQ-LPYPSLSFD 319 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er------------gl~~~~~~~da~~-Lpfpd~sFD 319 (667)
.+.+||+||||+|..+..+++.. ....|+.+|+++++++.|++. ...+.+...|+.. +.-.++.||
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 45799999999999999888763 456799999999999999861 1244555566544 344456899
Q ss_pred EEEeccccccccc---C--HHHHHHHHHhcccCCeEEEEEeC
Q 005959 320 MLHCARCGVDWDQ---K--DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 320 lV~~s~~ll~~~~---d--~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+|++... -.... . ...+++.+.+.|+|||++++...
T Consensus 229 VIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 229 VIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred EEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 9998742 11110 0 14589999999999999988754
No 130
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.49 E-value=9.3e-07 Score=92.52 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=77.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEecc--
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCAR-- 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~-- 325 (667)
++.+|||+|||+|..+..+++.......|+++|.++.+++.++++ ++ ++.+...|+..++...++||+|++.-
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPC 150 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCC
Confidence 347899999999999999887632234699999999999877643 43 34566677766665566799999631
Q ss_pred --c-ccc--------ccc--------CHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 326 --C-GVD--------WDQ--------KDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 326 --~-ll~--------~~~--------d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
. .+. +.+ ....+|.++.+.|||||+++.++.....
T Consensus 151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1 111 110 1235899999999999999999875543
No 131
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.3e-06 Score=87.98 Aligned_cols=108 Identities=16% Similarity=0.163 Sum_probs=79.0
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEe
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 305 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~ 305 (667)
......+.+.+...++ .+|||||||+|..++.|++.. .+|+.+|..++..+.|+++ |. ++.+.+
T Consensus 58 P~~vA~m~~~L~~~~g--------~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~ 126 (209)
T COG2518 58 PHMVARMLQLLELKPG--------DRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRH 126 (209)
T ss_pred cHHHHHHHHHhCCCCC--------CeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEE
Confidence 4455667777776665 899999999999999999873 3788999999999888764 44 566666
Q ss_pred ecccCCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 306 FASKQLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 306 ~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+|...---+...||.|+...++-. . |. .+.+.|||||++++-.-
T Consensus 127 gDG~~G~~~~aPyD~I~Vtaaa~~-v--P~----~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 127 GDGSKGWPEEAPYDRIIVTAAAPE-V--PE----ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcccCCCCCCCcCEEEEeeccCC-C--CH----HHHHhcccCCEEEEEEc
Confidence 664332223478999999866222 2 22 45678999999998654
No 132
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.47 E-value=3.7e-08 Score=84.50 Aligned_cols=91 Identities=25% Similarity=0.353 Sum_probs=59.3
Q ss_pred Eeccccchhhhhhhhhc-CCCeEEEEeecCCCCCchhhHhcccccc---cccccccCCCCCCCccccccccCccccccCC
Q 005959 520 LDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGTNHLPMILDRGFVG---VLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 520 lDm~~~~g~faa~l~~~-~~~vwvmnv~p~~~~~~l~~~~~RGlig---~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~ 595 (667)
||+|||.|-++..|.+. ...|+.+.+.+ ..+..+-++.--. ..+.=-+.+|.-+.+||+|++..+|..+.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~----~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~-- 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISE----EMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE-- 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-H----HHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS--
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCH----HHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc--
Confidence 79999999999999985 33344443332 3444444433211 22221233444359999999999988762
Q ss_pred CCCCCcchhheeccccccCCcEEEE
Q 005959 596 RHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
....++-|+-|+|||||+++|
T Consensus 75 ----~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 ----DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ----HHHHHHHHHHHHEEEEEEEEE
T ss_pred ----CHHHHHHHHHHHcCcCeEEeC
Confidence 456799999999999999986
No 133
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.42 E-value=1.1e-06 Score=90.32 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=77.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d 333 (667)
...|.|+|||.+.++..- . ..|...|..+ ++-.+..+|+.++|++|+|.|++++..+ -+..+
T Consensus 181 ~~vIaD~GCGEakiA~~~--~----~kV~SfDL~a----------~~~~V~~cDm~~vPl~d~svDvaV~CLS--LMgtn 242 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASSE--R----HKVHSFDLVA----------VNERVIACDMRNVPLEDESVDVAVFCLS--LMGTN 242 (325)
T ss_pred ceEEEecccchhhhhhcc--c----cceeeeeeec----------CCCceeeccccCCcCccCcccEEEeeHh--hhccc
Confidence 468999999999887622 1 2355566532 2345667799999999999999997654 34577
Q ss_pred HHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeecc
Q 005959 334 DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 391 (667)
Q Consensus 334 ~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~~ 391 (667)
...++.|++|+|+|||.++|++.-... ..-..+..-...++|......
T Consensus 243 ~~df~kEa~RiLk~gG~l~IAEv~SRf----------~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 243 LADFIKEANRILKPGGLLYIAEVKSRF----------SDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred HHHHHHHHHHHhccCceEEEEehhhhc----------ccHHHHHHHHHHcCCeeeehh
Confidence 889999999999999999999874322 111113334567788776553
No 134
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.42 E-value=1e-06 Score=98.71 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=75.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC--CCCCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--YPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lp--fpd~sFDlV~~s~~ 326 (667)
+.+|||+|||+|..+..+++.......|+++|.++.+++.++++ |+ ++.+..+|+..++ ++ ++||+|++..-
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~D~P 329 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILVDAP 329 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEEcCC
Confidence 47899999999999999988632345799999999999877653 43 3566777776653 33 68999997521
Q ss_pred -----cccccc---------C-------HHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 327 -----GVDWDQ---------K-------DGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 327 -----ll~~~~---------d-------~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.+...+ + ...+|.++.++|||||.+++++....
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 011001 0 13579999999999999998876543
No 135
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.41 E-value=1.8e-06 Score=90.63 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=72.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccC-CCCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-Lpfpd~sFDlV~ 322 (667)
.+++||+||||+|.++..++++. ...+++.+|+++.+++.+++.- ..+.+...|... +...+++||+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 45799999999999999888764 3457999999999999887641 123344444322 222246899999
Q ss_pred ecccccccccC----HHHHHHHHHhcccCCeEEEEEeC
Q 005959 323 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 323 ~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+... ....+. ...+++.+.+.|+|||.+++...
T Consensus 151 ~D~~-~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 151 VDST-DPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EeCC-CCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 8754 222221 24688999999999999998744
No 136
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.40 E-value=1.1e-06 Score=92.88 Aligned_cols=103 Identities=22% Similarity=0.356 Sum_probs=78.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-----------CCceEEeecc------cCCCCCC
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-----------LPAMIGSFAS------KQLPYPS 315 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg-----------l~~~~~~~da------~~Lpfpd 315 (667)
....++|+|||.|.-+...-+.|+. .++++|+++..|+.|++|. .++.+..+|. ..+++++
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred cccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 3478999999999887777677644 5899999999999998762 2345665653 3356677
Q ss_pred CCccEEEecccccccc-cCH---HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 316 LSFDMLHCARCGVDWD-QKD---GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 316 ~sFDlV~~s~~ll~~~-~d~---~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.+||+|-|-+| +|+. ... ..+|+++.+.|||||+|+-+.|..
T Consensus 195 p~fDivScQF~-~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 195 PRFDIVSCQFA-FHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred CCcceeeeeee-EeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence 67999999998 5543 332 469999999999999999988843
No 137
>PHA03412 putative methyltransferase; Provisional
Probab=98.38 E-value=1.7e-06 Score=88.86 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=71.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCC--ceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKEL--LTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~--~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
..+|||+|||+|.++..++++.. ....|+++|+++.+++.|++....+.+...|+...++ +++||+|+++--.....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEF-DTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccc-cCCccEEEECCCCCCcc
Confidence 36999999999999998876421 2357999999999999999776567788888776655 46899999985422111
Q ss_pred -c---------C-HHHHHHHHHhcccCCeE
Q 005959 332 -Q---------K-DGILLLEVDRVLKPGGY 350 (667)
Q Consensus 332 -~---------d-~~~~L~Ei~RvLKPGG~ 350 (667)
. . ...++....+++++|+.
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1 1 23578888887777775
No 138
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.38 E-value=3.8e-06 Score=83.14 Aligned_cols=99 Identities=19% Similarity=0.115 Sum_probs=74.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCC-CCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-PYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~L-pfpd~sFDlV~~s~~ 326 (667)
+..+++|||||+|+.+..++.. .+...++++|-++++++..+++ ++ ++.++.+++... +-. .+||.|+....
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~-~~~daiFIGGg 111 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL-PSPDAIFIGGG 111 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC-CCCCEEEECCC
Confidence 4489999999999999999944 4667899999999988665433 43 345555555432 212 27999998876
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
...+.+|+.+...|||||.+++.....
T Consensus 112 -----~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 112 -----GNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred -----CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 345789999999999999999977643
No 139
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.37 E-value=2.1e-06 Score=89.38 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=70.7
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCceEEeecccC-CCC-CCCCccEEEeccccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASKQ-LPY-PSLSFDMLHCARCGVDW 330 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~~-Lpf-pd~sFDlV~~s~~ll~~ 330 (667)
.+|||+|||+|.++..+++.. ....++++|.++.+++.|+++- ....+.++|... ++- ..++||+|+++--.+..
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 589999999999999998752 3357899999999999887541 123566666543 221 13579999998432110
Q ss_pred ------c---------------cC----HHHHHHHHHhcccCCeEEEEEeC
Q 005959 331 ------D---------------QK----DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 331 ------~---------------~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. .+ ...++..+.++|+|||.+++...
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0 01 13577788899999999998765
No 140
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.37 E-value=1.3e-06 Score=88.51 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=84.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCC-----ceEEeecccCCCCCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLP-----AMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~-----~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
...++||.|||.|..|..++-.- ...|..+|..+..++.|++.-.. ..+.+...+.+..+.++||+|++-.|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 45799999999999999887664 34688899999999999854222 345555666665556799999999998
Q ss_pred cccccCH-HHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHH---hhhhhhhhhhhccceEEeec
Q 005959 328 VDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQ---KRWNFVRDFVENLCWELVSQ 390 (667)
Q Consensus 328 l~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~---~~W~~ie~l~~~~~W~ll~~ 390 (667)
.|..++. -.+|+.+...|+|+|.+++-+..........+.+.. ..-..+..+-+.-+.+++.+
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 8876443 579999999999999999977654332111122211 11233445555556665544
No 141
>PRK03612 spermidine synthase; Provisional
Probab=98.33 E-value=2.6e-06 Score=97.40 Aligned_cols=103 Identities=15% Similarity=0.046 Sum_probs=76.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC------------CCceEEeecccC-CCCCCCCcc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG------------LPAMIGSFASKQ-LPYPSLSFD 319 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg------------l~~~~~~~da~~-Lpfpd~sFD 319 (667)
.+++|||||||+|..+..++++. ...+++.+|+++++++.+++.. ..+.+...|... +...+++||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45799999999999999998763 2368999999999999998731 234556666554 223356899
Q ss_pred EEEecccccccccCH-----HHHHHHHHhcccCCeEEEEEeCC
Q 005959 320 MLHCARCGVDWDQKD-----GILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 320 lV~~s~~ll~~~~d~-----~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+|++... ....+.. ..+++.+.+.|||||.+++....
T Consensus 376 vIi~D~~-~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 376 VIIVDLP-DPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred EEEEeCC-CCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 9999844 3222211 35889999999999999987643
No 142
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.33 E-value=2.7e-06 Score=86.78 Aligned_cols=98 Identities=19% Similarity=0.160 Sum_probs=72.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH-HcCC----------------CceEEeecccCCCCCC-
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGL----------------PAMIGSFASKQLPYPS- 315 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~-ergl----------------~~~~~~~da~~Lpfpd- 315 (667)
..+||..|||.|.-...|+++|+ .|+|+|+|+..++.+. +++. .+.+.++|.-.++-..
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~ 114 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV 114 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred CCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence 36999999999999999999974 5899999999999874 3332 1245667777766443
Q ss_pred CCccEEEecccccccccCH-HHHHHHHHhcccCCeEEEEE
Q 005959 316 LSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 316 ~sFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis 354 (667)
++||+|+=..+++...++. .+..+.+.++|+|||.+++.
T Consensus 115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 4799999765544444443 67999999999999994433
No 143
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.33 E-value=3.6e-06 Score=86.67 Aligned_cols=99 Identities=14% Similarity=0.075 Sum_probs=72.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCC-C-----CCCCCccEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQL-P-----YPSLSFDML 321 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~L-p-----fpd~sFDlV 321 (667)
+++|||||||+|..+..++..-.....++++|.++.+++.|++. ++ .+.+..+++... + .++++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 57999999999998888876532345799999999999888654 44 345566665432 1 124689999
Q ss_pred EecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 322 ~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
++... .+....++.++.+.|||||.+++...
T Consensus 149 fiDa~----k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 149 FVDAD----KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred EECCC----HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 87632 23345789999999999999887543
No 144
>PLN02366 spermidine synthase
Probab=98.33 E-value=3.7e-06 Score=90.04 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=74.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccCC-C-CCCCCccEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQL-P-YPSLSFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~L-p-fpd~sFDlV 321 (667)
.+.+||+||||.|.++..++++ .....|+.+|+++.+++.|++.- ..+.+..+|+... . .+++.||+|
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4689999999999999999887 34567999999999999987642 2345566664322 1 235689999
Q ss_pred EecccccccccC----HHHHHHHHHhcccCCeEEEEEeC
Q 005959 322 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 322 ~~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
++... -.+.+. ...+++.+.+.|+|||.++....
T Consensus 170 i~D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 170 IVDSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred EEcCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 98643 222221 13689999999999999987543
No 145
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.33 E-value=1.8e-06 Score=86.67 Aligned_cols=100 Identities=29% Similarity=0.426 Sum_probs=73.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC-CceEEeecccC-CC--CCCCCccEEEeccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL-PAMIGSFASKQ-LP--YPSLSFDMLHCARC 326 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl-~~~~~~~da~~-Lp--fpd~sFDlV~~s~~ 326 (667)
..+||||||.|.+...+|+.. +...+.|+|.....+..+.+ .++ ++.+.++|+.. +. ++++++|.|+..+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 389999999999999999885 56789999999988765543 354 55677777766 32 56789999998876
Q ss_pred ccccccCH--------HHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~~d~--------~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
-.|.... ..++.++.++|+|||.+.+.+-
T Consensus 98 -DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 98 -DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 4454211 4699999999999999999765
No 146
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.32 E-value=1.8e-06 Score=88.66 Aligned_cols=101 Identities=24% Similarity=0.259 Sum_probs=81.1
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCC-CceEEeecccCCC---CCCCCccEEEeccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGL-PAMIGSFASKQLP---YPSLSFDMLHCARC 326 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl-~~~~~~~da~~Lp---fpd~sFDlV~~s~~ 326 (667)
..+||||||.|.+...+|++. +...+.|+|+....+..| .+.++ ++.+.+.|+..+- +++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 479999999999999999986 556899999998776544 45688 8888888876543 45669999999887
Q ss_pred ccccccCH--------HHHHHHHHhcccCCeEEEEEeCC
Q 005959 327 GVDWDQKD--------GILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 327 ll~~~~d~--------~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
-.|.... ..+++.+.++|+|||.|.+.+-.
T Consensus 129 -DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 129 -DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred -CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 6665322 36999999999999999998653
No 147
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=8.2e-06 Score=84.21 Aligned_cols=110 Identities=22% Similarity=0.224 Sum_probs=86.1
Q ss_pred HHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeeccc
Q 005959 236 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASK 309 (667)
Q Consensus 236 ~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~ 309 (667)
.+...+.+.++ .+|||.|.|+|.++.+|+..-.....|+.+|..+...+.|+++ ++ .+.+...|+.
T Consensus 85 ~I~~~~gi~pg--------~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~ 156 (256)
T COG2519 85 YIVARLGISPG--------SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVR 156 (256)
T ss_pred HHHHHcCCCCC--------CEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccc
Confidence 45555666555 8999999999999999996533556799999999999999765 22 2455566776
Q ss_pred CCCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 310 QLPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 310 ~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
..-+++ .||+|+.- .+++-.++..++.+|+|||.+++..|+.+.
T Consensus 157 ~~~~~~-~vDav~LD------mp~PW~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 157 EGIDEE-DVDAVFLD------LPDPWNVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred cccccc-ccCEEEEc------CCChHHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 666665 89999855 267778999999999999999999887543
No 148
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.26 E-value=9.2e-06 Score=71.37 Aligned_cols=101 Identities=27% Similarity=0.332 Sum_probs=72.5
Q ss_pred EEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC--C---ceEEeecccC--CCCCC-CCccEEEeccccc
Q 005959 257 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL--P---AMIGSFASKQ--LPYPS-LSFDMLHCARCGV 328 (667)
Q Consensus 257 VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl--~---~~~~~~da~~--Lpfpd-~sFDlV~~s~~ll 328 (667)
++|+|||+|..+ .+.........++++|.+..++..+..... . +.+...+... +++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999965 333322111357789999999987554431 1 3455556554 78887 489999 666656
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
++.. ....+.++.++|+|+|.+++.......
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 6555 678999999999999999999876543
No 149
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.23 E-value=8.3e-06 Score=91.52 Aligned_cols=95 Identities=18% Similarity=0.229 Sum_probs=70.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC----CCCCCCCccEEEec
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHCA 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~----Lpfpd~sFDlV~~s 324 (667)
..+|||+|||+|.++..|++.+ ..++++|.|+.|++.|+++ ++ ++.+..+|+.. +++.+++||+|++.
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 4789999999999999999874 4799999999999888754 33 46677777643 34556789999987
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
--.. . ....+..+.+ ++|++.++++..
T Consensus 375 PPr~---g-~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 375 PPRA---G-AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred cCCc---C-hHHHHHHHHh-cCCCeEEEEEeC
Confidence 4311 1 2345555555 699999999864
No 150
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.22 E-value=7.3e-06 Score=82.37 Aligned_cols=103 Identities=22% Similarity=0.309 Sum_probs=65.1
Q ss_pred CCCEEEEeCCCCch----HHHHHhh--c--CCceeEEEEecCCHHHHHHHHHc--------CC-----------------
Q 005959 253 GVRTILDIGCGYGS----FGAHLFS--K--ELLTMCIANYEASGSQVQLTLER--------GL----------------- 299 (667)
Q Consensus 253 ~~~~VLDIGCGtG~----~t~~La~--~--g~~~~sV~gvD~S~~ml~~A~er--------gl----------------- 299 (667)
..-+|+..||++|. ++..|.+ . ......|.|.|+|+.+++.|++- ++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999999994 4444444 1 11257899999999999998742 11
Q ss_pred --------CceEEeecccCCCCCCCCccEEEecccccccccCH-HHHHHHHHhcccCCeEEEEEe
Q 005959 300 --------PAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 300 --------~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.+.|...+....+.+.+.||+|+|-++++++.+.. .+++..+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 13355556555334557899999999977776443 579999999999999999964
No 151
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.20 E-value=5.5e-06 Score=84.62 Aligned_cols=101 Identities=18% Similarity=0.286 Sum_probs=71.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---------C-----------------------
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---------P----------------------- 300 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---------~----------------------- 300 (667)
.+..+|||||..|.++..+++. +....+.|+|+++..|+.|++..- .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~-F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKD-FGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHh-hccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3578999999999999999987 344569999999999999986420 0
Q ss_pred --------ce-----EEeecccCCCCCCCCccEEEeccc----ccccccCH-HHHHHHHHhcccCCeEEEEE
Q 005959 301 --------AM-----IGSFASKQLPYPSLSFDMLHCARC----GVDWDQKD-GILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 301 --------~~-----~~~~da~~Lpfpd~sFDlV~~s~~----ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis 354 (667)
+. ++.-..+-+.+....||+|.|..+ -++|.++. ..+|+.+.++|.|||+|++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00 000001112234567999999743 23444444 57999999999999999884
No 152
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.16 E-value=4.8e-06 Score=98.52 Aligned_cols=101 Identities=14% Similarity=0.184 Sum_probs=74.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CceEEeecccCC-CCCCCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-PYPSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~L-pfpd~sFDlV~~s~ 325 (667)
+.+|||+|||+|.++..++..|. .+|+++|.|+.+++.|+++ ++ .+.+..+|+... .-..++||+|++.-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 47999999999999999998763 3699999999999988754 34 356677775432 11146899999963
Q ss_pred cccc----------cccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 326 CGVD----------WDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 326 ~ll~----------~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
-.+. ...+...++..+.++|+|||.++++..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2111 112234678889999999999988764
No 153
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=8.8e-06 Score=86.11 Aligned_cols=98 Identities=21% Similarity=0.275 Sum_probs=68.6
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 256 ~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
+|||||||+|..+..++.+. ....|+++|+|+..++.|+++ ++ +..+...+ -+.--.++||+|+|+--.+.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~d--lf~~~~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQSD--LFEPLRGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeee--cccccCCceeEEEeCCCCCCC
Confidence 79999999999999999884 446899999999999888654 43 12223222 122122489999998432211
Q ss_pred c-----c-----C--------------HHHHHHHHHhcccCCeEEEEEeC
Q 005959 331 D-----Q-----K--------------DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 331 ~-----~-----d--------------~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. + + ...++.++.+.|+|||.+++..-
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 1 0 1 12578889999999999998754
No 154
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.15 E-value=1.7e-05 Score=76.99 Aligned_cols=106 Identities=16% Similarity=0.039 Sum_probs=88.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC-----CCCCCccEEEecccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP-----YPSLSFDMLHCARCG 327 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp-----fpd~sFDlV~~s~~l 327 (667)
++.-|||+|.|||-+|..++++|+...++++++.++.......++...+.+..+|+..+. +.+..||.|+|.--+
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl 127 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPL 127 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence 446899999999999999999999999999999999999988888777777777877665 677889999998665
Q ss_pred cccccCH-HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKD-GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+.+.... -++|+++...|++||.++--...+
T Consensus 128 l~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 128 LNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred ccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 5554333 368999999999999999876653
No 155
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.10 E-value=1e-05 Score=89.60 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=71.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CceEEeecccCCC--C--CCCCccEEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQLP--Y--PSLSFDMLH 322 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~Lp--f--pd~sFDlV~ 322 (667)
+.+|||+|||+|.++..++..+ ...|+++|.++.+++.|++. ++ .+.+..+|+...- + ..++||+|+
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4789999999999998776554 34799999999999888654 44 3456777765431 1 346899999
Q ss_pred ecccccccc--------cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 323 CARCGVDWD--------QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 323 ~s~~ll~~~--------~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+.--.+.-. .....++....++|+|||.|+....
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 984422111 1123455667899999999998654
No 156
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.09 E-value=2.4e-05 Score=83.04 Aligned_cols=101 Identities=12% Similarity=0.125 Sum_probs=72.0
Q ss_pred CEEEEeCCCCch----HHHHHhhcC---CceeEEEEecCCHHHHHHHHHc--------CC--------------------
Q 005959 255 RTILDIGCGYGS----FGAHLFSKE---LLTMCIANYEASGSQVQLTLER--------GL-------------------- 299 (667)
Q Consensus 255 ~~VLDIGCGtG~----~t~~La~~g---~~~~sV~gvD~S~~ml~~A~er--------gl-------------------- 299 (667)
-+|+..||.||. ++..+.+.. .....|+|+|+|+.+++.|++- ++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 689999999994 444444431 1146799999999999988742 11
Q ss_pred --------CceEEeecccCCCCC-CCCccEEEecccccccccC-HHHHHHHHHhcccCCeEEEEEe
Q 005959 300 --------PAMIGSFASKQLPYP-SLSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 300 --------~~~~~~~da~~Lpfp-d~sFDlV~~s~~ll~~~~d-~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.+.|...+....+++ .+.||+|+|-++++|+.+. ..+++..+.+.|+|||+|++..
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 112444555444443 5789999999987776533 3579999999999999988853
No 157
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.08 E-value=1.1e-05 Score=84.96 Aligned_cols=84 Identities=14% Similarity=0.105 Sum_probs=63.7
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC--CCceEEeeccc
Q 005959 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG--LPAMIGSFASK 309 (667)
Q Consensus 232 ~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg--l~~~~~~~da~ 309 (667)
...+.+.+.+.... ..+|||||||+|.++..+++++. .++++|.++.|++.++++. .++.+..+|+.
T Consensus 29 ~i~~~i~~~l~~~~--------~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~ 97 (272)
T PRK00274 29 NILDKIVDAAGPQP--------GDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAEDNLTIIEGDAL 97 (272)
T ss_pred HHHHHHHHhcCCCC--------cCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhccCceEEEEChhh
Confidence 34445555554333 37899999999999999999852 6899999999999987753 35677888988
Q ss_pred CCCCCCCCccEEEeccc
Q 005959 310 QLPYPSLSFDMLHCARC 326 (667)
Q Consensus 310 ~Lpfpd~sFDlV~~s~~ 326 (667)
.+++++-.+|.|+++.-
T Consensus 98 ~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 98 KVDLSELQPLKVVANLP 114 (272)
T ss_pred cCCHHHcCcceEEEeCC
Confidence 88876533688888844
No 158
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.08 E-value=2.1e-05 Score=84.33 Aligned_cols=98 Identities=19% Similarity=0.220 Sum_probs=69.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCC-CCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY-PSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpf-pd~sFDlV~~s~~l 327 (667)
+.+|||+|||+|.++..+++.+ ..|+++|.++.+++.|++. ++ ++.+.++|+..+.. ..++||+|++.--.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr 250 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPR 250 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence 3789999999999999999874 4689999999999887643 44 36778888776543 34579999987431
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
- .....+.++...++|++.++++.-..
T Consensus 251 ~----G~~~~~~~~l~~~~~~~ivyvsc~p~ 277 (315)
T PRK03522 251 R----GIGKELCDYLSQMAPRFILYSSCNAQ 277 (315)
T ss_pred C----CccHHHHHHHHHcCCCeEEEEECCcc
Confidence 1 11123334444478888888876543
No 159
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.04 E-value=1.4e-06 Score=82.30 Aligned_cols=93 Identities=25% Similarity=0.413 Sum_probs=64.1
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccccccccccC-CCCCCCccccccccCcccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEA-FPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~c~~-f~typ~tyDl~H~~~~~~~~~ 593 (667)
-.+|||+|||.|.|+..|.+ .+. +|+-+|-. ..+.. +-.....++-.++ ++ +++||+|+|..+|.+..
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~--~~~---~~~g~D~~~~~~~~---~~~~~~~~~~~~~~~~--~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAK--RGF---EVTGVDISPQMIEK---RNVVFDNFDAQDPPFP--DGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHH--TTS---EEEEEESSHHHHHH---TTSEEEEEECHTHHCH--SSSEEEEEEESSGGGSS
T ss_pred CCEEEEEcCCCCHHHHHHHH--hCC---EEEEEECCHHHHhh---hhhhhhhhhhhhhhcc--ccchhhHhhHHHHhhcc
Confidence 45999999999999999977 333 45544544 22222 2222222211121 22 38999999999998775
Q ss_pred CCCCCCCcchhheeccccccCCcEEEEEcCH
Q 005959 594 GHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 624 (667)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 624 (667)
+...+|-+|=|+|+|||++++.+..
T Consensus 93 ------d~~~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 93 ------DPEEFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ------HHHHHHHHHHHCEEEEEEEEEEEEB
T ss_pred ------cHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 3668999999999999999998653
No 160
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.01 E-value=1.9e-05 Score=81.21 Aligned_cols=91 Identities=16% Similarity=0.186 Sum_probs=62.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCce-EEeecccCC-----CCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM-IGSFASKQL-----PYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~-~~~~da~~L-----pfpd~sFDlV~~s~~ 326 (667)
...+|||+|||||.|+..+++.| ...|+++|.++.|+....+....+. +...++..+ +..-..||+++++.+
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~ 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence 45789999999999999999986 3569999999988876444443322 222233322 212236787777644
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
..|..+.+.|+| |.+++-.
T Consensus 153 ---------~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 153 ---------SILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred ---------hHHHHHHHHhCc-CeEEEEc
Confidence 247789999999 7777654
No 161
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.01 E-value=2.3e-05 Score=81.84 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=63.9
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeec
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFA 307 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~d 307 (667)
....+.+.+.+.... ..+|||||||+|.++..+++++ ..++++|.++.|++.++++. .++.+..+|
T Consensus 15 ~~~~~~iv~~~~~~~--------~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D 83 (258)
T PRK14896 15 DRVVDRIVEYAEDTD--------GDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGD 83 (258)
T ss_pred HHHHHHHHHhcCCCC--------cCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhccCCCEEEEEec
Confidence 344455555554333 3789999999999999999884 36899999999999887653 246678888
Q ss_pred ccCCCCCCCCccEEEeccc
Q 005959 308 SKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 308 a~~Lpfpd~sFDlV~~s~~ 326 (667)
+..++++ .||.|+++..
T Consensus 84 ~~~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 84 ALKVDLP--EFNKVVSNLP 100 (258)
T ss_pred cccCCch--hceEEEEcCC
Confidence 8888776 4899999865
No 162
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.98 E-value=3.3e-05 Score=86.34 Aligned_cols=96 Identities=17% Similarity=0.175 Sum_probs=69.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC----CCCCCCCccEEEec
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ----LPYPSLSFDMLHCA 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~----Lpfpd~sFDlV~~s 324 (667)
..+|||+|||+|.++..|++.. ..|+++|.++.+++.|+++ ++ ++.+..+|+.. +++.+++||+|++.
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 3789999999999999999863 4689999999999888754 33 45677777654 23445689999976
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
-... .-...++..+.+ ++|++.++++..
T Consensus 370 PPr~---G~~~~~l~~l~~-l~~~~ivyvsc~ 397 (431)
T TIGR00479 370 PPRK---GCAAEVLRTIIE-LKPERIVYVSCN 397 (431)
T ss_pred cCCC---CCCHHHHHHHHh-cCCCEEEEEcCC
Confidence 4311 112456666554 899998888743
No 163
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.95 E-value=3.3e-05 Score=75.93 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=62.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---C-----CCceEEeecccC-C--C-CCCCCccE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---G-----LPAMIGSFASKQ-L--P-YPSLSFDM 320 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---g-----l~~~~~~~da~~-L--p-fpd~sFDl 320 (667)
.+.+|||||||+|..+..++... ....|+..|..+ .++..+.. + ..+.+..++=.. . . ....+||+
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred CCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45899999999999999988872 355788899888 66554432 1 122333222111 1 0 23468999
Q ss_pred EEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 321 V~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|+++.+++ .....+.++.-+.++|+|+|.++++..
T Consensus 123 IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 123 ILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999944 456667899999999999999888765
No 164
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.95 E-value=0.00011 Score=73.95 Aligned_cols=99 Identities=13% Similarity=0.058 Sum_probs=68.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC-CCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ-LPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~-Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+|||+|.++..++.++ ...|+++|.++.+++.+++. ++ ++.+...|+.. ++...++||+|++.--
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP- 130 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP- 130 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC-
Confidence 3689999999999998766665 35799999999998877643 33 35566666544 3223457999999854
Q ss_pred cccccCHHHHHHHHHh--cccCCeEEEEEeC
Q 005959 328 VDWDQKDGILLLEVDR--VLKPGGYFVWTSP 356 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~R--vLKPGG~Lvis~p 356 (667)
+. ..-...++..+.. +|+|+|.+++...
T Consensus 131 y~-~g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 131 FR-KGLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CC-CChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 22 1122345555554 4899999998865
No 165
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.90 E-value=2.9e-05 Score=77.47 Aligned_cols=130 Identities=19% Similarity=0.249 Sum_probs=86.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-Cchhh----Hhcccc--cccccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~----~~~RGl--ig~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
..|||+|||+|.++.+|... .+- ..|+-+|.. ..+.. +-+.|+ +-+++.-.+.++. ..+||+|-+..+
T Consensus 47 ~~VLDiGcGtG~~al~la~~-~~~--~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~~- 121 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIA-RPE--LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRAV- 121 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHH-CCC--CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEccc-
Confidence 46999999999988877642 221 245555554 33322 223444 3444444445554 579999998531
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEee---eccC-CCccEEEEEcc
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIE---IESN-SDERLLICQKP 660 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~---~~~~-~~~~~li~~K~ 660 (667)
..+.+++-++-|+|||||.+++-+......++.++++.+-|.+..+- .+.- ++..+.|.+|+
T Consensus 122 ---------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (187)
T PRK00107 122 ---------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGLDGERHLVIIRKK 187 (187)
T ss_pred ---------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCCCCcEEEEEEecC
Confidence 23457888999999999999999888888899999999999965442 1211 13446666663
No 166
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.90 E-value=9.2e-05 Score=76.91 Aligned_cols=68 Identities=13% Similarity=0.129 Sum_probs=54.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeecccCCCCCCCCcc---EEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASKQLPYPSLSFD---MLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~~Lpfpd~sFD---lV~~s~~ 326 (667)
..+|||||||+|.++..|++++ ..++++|.++.+++.++++. .++.+..+|+..++++ +|| +|+++..
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLP--DFPKQLKVVSNLP 103 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChh--HcCCcceEEEcCC
Confidence 4799999999999999999985 24899999999999887652 3466778888888876 477 7777744
No 167
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=97.88 E-value=5.9e-05 Score=76.39 Aligned_cols=100 Identities=19% Similarity=0.169 Sum_probs=73.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC-CC-----CCCCCccEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-----YPSLSFDML 321 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-Lp-----fpd~sFDlV 321 (667)
+++|||||+++|..+..|++.-.....++.+|.++...+.|++. |+ .+.+..+++.. ++ .+.++||+|
T Consensus 46 ~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V 125 (205)
T PF01596_consen 46 PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFV 125 (205)
T ss_dssp -SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE
T ss_pred CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEE
Confidence 58999999999999999997633456899999999999888642 43 34556565533 12 123589999
Q ss_pred EecccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 322 ~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+.-.. ..+...++..+.+.|+|||.+++....
T Consensus 126 FiDa~----K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 126 FIDAD----KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp EEEST----GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred EEccc----ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 97632 345567899999999999999987653
No 168
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=97.85 E-value=9.5e-06 Score=81.18 Aligned_cols=94 Identities=16% Similarity=0.251 Sum_probs=61.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhh----Hhcccc---cccccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~----~~~RGl---ig~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
-+|||+|||.|.++..|.+.+..|..+-+.| ..+.. +-++|+ -....|..+ ++ ++.+||+|-|..+|
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~----~~i~~a~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~I~~~~~~ 105 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNP----MSIANLERIKAAENLDNLHTAVVDLNN-LT-FDGEYDFILSTVVL 105 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHHHHcCCCcceEEecChhh-CC-cCCCcCEEEEecch
Confidence 4799999999999999987443444443322 32222 223444 223344432 22 35789999998887
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
.... ......++-+|-|.|+|||++++
T Consensus 106 ~~~~----~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 106 MFLE----AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hhCC----HHHHHHHHHHHHHHcCCCcEEEE
Confidence 5432 23456789999999999999654
No 169
>PLN02476 O-methyltransferase
Probab=97.84 E-value=0.00012 Score=77.27 Aligned_cols=100 Identities=12% Similarity=0.148 Sum_probs=72.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccC-CC-C----CCCCccE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQ-LP-Y----PSLSFDM 320 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~-Lp-f----pd~sFDl 320 (667)
++++|||||+++|..+..++..-.....++.+|.+++..+.|++. |+. +.+..+++.. |+ + .+++||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 358999999999999999987422234689999999998888643 543 4555555433 22 1 2368999
Q ss_pred EEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 321 V~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|+.-.- ..+...++..+.++|+|||.+++...
T Consensus 198 VFIDa~----K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 198 AFVDAD----KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EEECCC----HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 987632 33446789999999999999988644
No 170
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.84 E-value=8.6e-05 Score=77.23 Aligned_cols=110 Identities=21% Similarity=0.238 Sum_probs=79.4
Q ss_pred HHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeeccc
Q 005959 236 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASK 309 (667)
Q Consensus 236 ~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~ 309 (667)
.|...+.+.+| .+|||.|.|+|.++..|+..-.+...|...|.++...+.|++. ++ .+.+...|+.
T Consensus 31 ~I~~~l~i~pG--------~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 31 YILMRLDIRPG--------SRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp HHHHHTT--TT---------EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred HHHHHcCCCCC--------CEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 45566666666 8999999999999999997644556799999999999888754 44 3566677775
Q ss_pred CCCCC---CCCccEEEecccccccccCHHHHHHHHHhcc-cCCeEEEEEeCCCC
Q 005959 310 QLPYP---SLSFDMLHCARCGVDWDQKDGILLLEVDRVL-KPGGYFVWTSPLTN 359 (667)
Q Consensus 310 ~Lpfp---d~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvL-KPGG~Lvis~p~~~ 359 (667)
.-.|+ ++.||.|+.-. +++-.++..+.++| ||||++++-.|+..
T Consensus 103 ~~g~~~~~~~~~DavfLDl------p~Pw~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 103 EEGFDEELESDFDAVFLDL------PDPWEAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp CG--STT-TTSEEEEEEES------SSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred cccccccccCcccEEEEeC------CCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence 54443 36799998552 45667999999999 99999999998754
No 171
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.84 E-value=9.5e-05 Score=77.75 Aligned_cols=103 Identities=20% Similarity=0.259 Sum_probs=73.0
Q ss_pred CCCEEEEeCCCCc----hHHHHHhhcCC----ceeEEEEecCCHHHHHHHHH---------cCCC---------------
Q 005959 253 GVRTILDIGCGYG----SFGAHLFSKEL----LTMCIANYEASGSQVQLTLE---------RGLP--------------- 300 (667)
Q Consensus 253 ~~~~VLDIGCGtG----~~t~~La~~g~----~~~sV~gvD~S~~ml~~A~e---------rgl~--------------- 300 (667)
..-+|.-.||+|| +++..|.+... ..+.|.|.|++..+++.|++ ++++
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 3568999999999 45555555542 25889999999999998863 2221
Q ss_pred ----------ceEEeecccCCCCCCCCccEEEecccccccccCH-HHHHHHHHhcccCCeEEEEEe
Q 005959 301 ----------AMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 301 ----------~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
+.|...+...-++..+.||+|+|-++++.+.... .+++..++..|+|||+|++..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1122233322232446799999999977766443 579999999999999999963
No 172
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=97.84 E-value=1.3e-05 Score=84.84 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=72.2
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-Cchhh----Hhcccc--cccccccccCCCCCCCccccccccCccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPM----ILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~----~~~RGl--ig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
+|||+|||.|.++.+|.+.+. .|+-+|.. .-+.. +-+.|+ --...|.-+ .+ .+..||+|-+..+|.
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~-----~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~-~~-~~~~fD~I~~~~vl~ 195 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF-----DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINS-AS-IQEEYDFILSTVVLM 195 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhc-cc-ccCCccEEEEcchhh
Confidence 799999999999999987433 34444543 33332 334555 111122222 11 268999999988876
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEE---cCH-----------HHHHHHHHHHhhCCCeeEEee
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIR---DTA-----------RLIESARALTTRLKWDARVIE 645 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~---d~~-----------~~~~~~~~~~~~~~W~~~~~~ 645 (667)
... +-.+..++-+|-|+|+|||++++- ++. -.-++++.+.+. |++...+
T Consensus 196 ~l~----~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 196 FLN----RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred hCC----HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 543 245668999999999999996552 111 113455565554 9887763
No 173
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.82 E-value=6.6e-05 Score=84.41 Aligned_cols=97 Identities=19% Similarity=0.263 Sum_probs=66.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcC---CceeEEEEecCCHHHHHHH----HHcC--CCceEEeecccCCCCCCCCccEEEec
Q 005959 254 VRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLT----LERG--LPAMIGSFASKQLPYPSLSFDMLHCA 324 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g---~~~~sV~gvD~S~~ml~~A----~erg--l~~~~~~~da~~Lpfpd~sFDlV~~s 324 (667)
...|||||||+|.+....++.+ .....|++++-++.++... ++.+ -.+.++..+++.+..+. .+|+|++.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe-kvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE-KVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS--EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC-ceeEEEEe
Confidence 4689999999999987666543 1356899999998766443 2333 35778889999988775 89999997
Q ss_pred ccccccc--cCHHHHHHHHHhcccCCeEEE
Q 005959 325 RCGVDWD--QKDGILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 325 ~~ll~~~--~d~~~~L~Ei~RvLKPGG~Lv 352 (667)
... .+. +-....|....|.|||||.++
T Consensus 266 lLG-sfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLG-SFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --B-TTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccC-CccccccCHHHHHHHHhhcCCCCEEe
Confidence 432 122 223467889999999999987
No 174
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=97.82 E-value=1.5e-05 Score=79.65 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=60.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhH----hcccc--cccccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~----~~RGl--ig~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
.+|||+|||.|.++..|.+.+. .|+-+|-. ..+..+ -+.|+ -....|.. .++ ++.+||+|.+..+|
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~-----~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~-~~~-~~~~fD~I~~~~~~ 104 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGY-----DVRAWDHNPASIASVLDMKARENLPLRTDAYDIN-AAA-LNEDYDFIFSTVVF 104 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCC-----eEEEEECCHHHHHHHHHHHHHhCCCceeEeccch-hcc-ccCCCCEEEEeccc
Confidence 4799999999999999987433 34445543 333322 23343 12222322 222 35689999998888
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
.... .-....++-++.|.|+|||++++
T Consensus 105 ~~~~----~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 105 MFLQ----AGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred ccCC----HHHHHHHHHHHHHHhCCCcEEEE
Confidence 6543 23556899999999999999554
No 175
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.81 E-value=0.00018 Score=77.51 Aligned_cols=97 Identities=19% Similarity=0.201 Sum_probs=63.3
Q ss_pred chhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---C--CCc--
Q 005959 229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---G--LPA-- 301 (667)
Q Consensus 229 ~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---g--l~~-- 301 (667)
....|+..+++++..............+|||||||+|.+...|+.+. ....++++|+++.+++.|++. + +..
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I 168 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLNGAI 168 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcE
Confidence 35778888888875432112222345799999999998887777652 246799999999999888753 2 322
Q ss_pred eEE-eecccCCC----CCCCCccEEEeccc
Q 005959 302 MIG-SFASKQLP----YPSLSFDMLHCARC 326 (667)
Q Consensus 302 ~~~-~~da~~Lp----fpd~sFDlV~~s~~ 326 (667)
.+. +.+...+. .+++.||+|+|+--
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcNPP 198 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCNPP 198 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeCCC
Confidence 222 12222221 24678999999966
No 176
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.81 E-value=5.9e-05 Score=86.12 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=77.6
Q ss_pred cCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCC-CceEEeecccCCC--CCCCCccEEEec
Q 005959 252 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGL-PAMIGSFASKQLP--YPSLSFDMLHCA 324 (667)
Q Consensus 252 ~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl-~~~~~~~da~~Lp--fpd~sFDlV~~s 324 (667)
.....+||||||.|.++..+|+.. +...+.|+|.+...+..+. +.++ ++.+...++..+. |+++++|.|+.+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 345789999999999999999884 5578999999988765543 3354 3344444543332 788999999998
Q ss_pred ccccccccCH--------HHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWDQKD--------GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~~d~--------~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+. -.|.... ..++..+.++|||||.+.+.+-
T Consensus 425 FP-DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 425 FP-DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred CC-CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 77 6664221 3699999999999999998754
No 177
>PLN02244 tocopherol O-methyltransferase
Probab=97.81 E-value=1.2e-05 Score=87.12 Aligned_cols=95 Identities=21% Similarity=0.316 Sum_probs=60.9
Q ss_pred eeEEEeccccchhhhhhhhhc-CCCeEEEEeecCCCCCchhhH----hcccccc----ccccccc-CCCCCCCccccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGTNHLPMI----LDRGFVG----VLHDWCE-AFPTYPRTYDLVHA 585 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~-~~~vwvmnv~p~~~~~~l~~~----~~RGlig----~~~~~c~-~f~typ~tyDl~H~ 585 (667)
-..|||+|||.|+++..|.+. +..|..+.+.| .++..+ -++|+.. +..|..+ +|+ +.+||+|.+
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~----~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~--~~~FD~V~s 192 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARKYGANVKGITLSP----VQAARANALAAAQGLSDKVSFQVADALNQPFE--DGQFDLVWS 192 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHhcCCEEEEEECCH----HHHHHHHHHHHhcCCCCceEEEEcCcccCCCC--CCCccEEEE
Confidence 457999999999999999862 12333333222 333322 2345421 1223322 343 389999999
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
...+.++. +...+|-||-|+|||||.++|.+
T Consensus 193 ~~~~~h~~------d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 193 MESGEHMP------DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCchhccC------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 77766554 23468999999999999999853
No 178
>PRK04148 hypothetical protein; Provisional
Probab=97.80 E-value=0.00012 Score=69.34 Aligned_cols=92 Identities=12% Similarity=0.125 Sum_probs=64.2
Q ss_pred CCEEEEeCCCCch-HHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCC-CCCccEEEecccccccc
Q 005959 254 VRTILDIGCGYGS-FGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP-SLSFDMLHCARCGVDWD 331 (667)
Q Consensus 254 ~~~VLDIGCGtG~-~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfp-d~sFDlV~~s~~ll~~~ 331 (667)
..+|||||||+|. ++..|++.|. .|+++|.++..++.+++.+..+.. .|..+-++. -+.+|+|.+... .
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~~~~~v~--dDlf~p~~~~y~~a~liysirp----p 87 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKLGLNAFV--DDLFNPNLEIYKNAKLIYSIRP----P 87 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHhCCeEEE--CcCCCCCHHHHhcCCEEEEeCC----C
Confidence 4789999999996 8889988764 589999999999999988764443 454443332 356999999865 3
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 332 QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
++....+.++.+.+ |.-++|...
T Consensus 88 ~el~~~~~~la~~~--~~~~~i~~l 110 (134)
T PRK04148 88 RDLQPFILELAKKI--NVPLIIKPL 110 (134)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEcC
Confidence 33445555665544 344555443
No 179
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.79 E-value=1.7e-05 Score=82.90 Aligned_cols=99 Identities=21% Similarity=0.192 Sum_probs=77.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQK 333 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d 333 (667)
...++|+|||.|.++..- +...+.+.|.+...+..++..+.. ....+|+..+|+.+.+||.+++..+++|+...
T Consensus 46 gsv~~d~gCGngky~~~~-----p~~~~ig~D~c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~ 119 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN-----PLCLIIGCDLCTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTR 119 (293)
T ss_pred cceeeecccCCcccCcCC-----CcceeeecchhhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhH
Confidence 478999999999765321 345688999999988888877653 45557899999999999999999885555422
Q ss_pred --HHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 334 --DGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 334 --~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
...+++|+.|+|||||...+.....
T Consensus 120 ~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 120 ERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 2479999999999999988876543
No 180
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.79 E-value=0.00016 Score=73.90 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=74.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCce--EEe-ecccC-CC-CCCCCccEEEe
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAM--IGS-FASKQ-LP-YPSLSFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~--~~~-~da~~-Lp-fpd~sFDlV~~ 323 (667)
++.+|||||.+.|..+..|+..-.....++.+|.++++.+.|++. |+... ... +++.. +. ...++||+|+.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFI 138 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFI 138 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEEE
Confidence 358999999999999999997633256799999999999998764 44332 232 23221 22 45689999986
Q ss_pred cccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
-. ...+...+|..+.++|+|||.+++...
T Consensus 139 Da----dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 139 DA----DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred eC----ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 52 234556899999999999999998754
No 181
>PLN02672 methionine S-methyltransferase
Probab=97.79 E-value=5.9e-05 Score=92.07 Aligned_cols=101 Identities=16% Similarity=0.133 Sum_probs=71.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----C-----------------CceEEeecccCCC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----L-----------------PAMIGSFASKQLP 312 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l-----------------~~~~~~~da~~Lp 312 (667)
+.+|||+|||+|.++..+++.. ....++++|+|+.+++.|+++. + ++.+...|....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~- 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY- 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh-
Confidence 3589999999999999999874 3357999999999998885431 1 245666665443
Q ss_pred CCC--CCccEEEecccccc-------------cc--------------------cCH----HHHHHHHHhcccCCeEEEE
Q 005959 313 YPS--LSFDMLHCARCGVD-------------WD--------------------QKD----GILLLEVDRVLKPGGYFVW 353 (667)
Q Consensus 313 fpd--~sFDlV~~s~~ll~-------------~~--------------------~d~----~~~L~Ei~RvLKPGG~Lvi 353 (667)
+.+ ..||+|+|+--.+. +. ++. .+++.+..++|+|||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 222 36999999743110 00 111 3578888999999999887
Q ss_pred EeC
Q 005959 354 TSP 356 (667)
Q Consensus 354 s~p 356 (667)
-.-
T Consensus 277 EiG 279 (1082)
T PLN02672 277 NMG 279 (1082)
T ss_pred EEC
Confidence 654
No 182
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.79 E-value=0.00014 Score=80.00 Aligned_cols=95 Identities=14% Similarity=0.171 Sum_probs=68.3
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCC-CCCCccEEEeccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPY-PSLSFDMLHCARCGV 328 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpf-pd~sFDlV~~s~~ll 328 (667)
.+|||+|||+|.++..++..+ ..|+++|.++.+++.|+++ ++ ++.+..+++..... ..++||+|++.--.-
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 689999999999999999764 4699999999999887654 33 45677777655321 224699999874411
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.-...++..+. .++|++.++++..
T Consensus 312 ---G~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 312 ---GIGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred ---CCcHHHHHHHH-hcCCCeEEEEEeC
Confidence 11234555554 4799999998864
No 183
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.78 E-value=0.00021 Score=74.46 Aligned_cols=121 Identities=20% Similarity=0.278 Sum_probs=78.9
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCceE--E
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAMI--G 304 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~~--~ 304 (667)
+.+.+.+.+.+..... .....+||+|||+|..+..++.. .....++++|.|+.++..|.++ ++..++ .
T Consensus 131 EE~V~~Vid~~~~~~~-----~~~~~ildlgtGSGaIslsll~~-L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEH-----SKHTHILDLGTGSGAISLSLLHG-LPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred HHHHHHHHHHHhhhhh-----cccceEEEecCCccHHHHHHHhc-CCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 4555555555543222 13357999999999999999865 4567899999999999887654 233222 2
Q ss_pred eec-----ccCCCCCCCCccEEEecccccccccCH--------------------------HHHHHHHHhcccCCeEEEE
Q 005959 305 SFA-----SKQLPYPSLSFDMLHCARCGVDWDQKD--------------------------GILLLEVDRVLKPGGYFVW 353 (667)
Q Consensus 305 ~~d-----a~~Lpfpd~sFDlV~~s~~ll~~~~d~--------------------------~~~L~Ei~RvLKPGG~Lvi 353 (667)
..+ ....+...+.+|+++|+--.+. .+|. -.++.-+.|.|+|||.+++
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~-~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIR-KDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred ecccccccccccccccCceeEEecCCCccc-ccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 111 1223356789999999854221 1111 1345667899999999999
Q ss_pred EeCCC
Q 005959 354 TSPLT 358 (667)
Q Consensus 354 s~p~~ 358 (667)
.....
T Consensus 284 e~~~~ 288 (328)
T KOG2904|consen 284 ELVER 288 (328)
T ss_pred Eeccc
Confidence 87643
No 184
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=97.76 E-value=5.1e-05 Score=77.04 Aligned_cols=97 Identities=22% Similarity=0.280 Sum_probs=58.3
Q ss_pred eEEEeccccchhhhhhhhhcC---CCeEEEEeecCCCCCchhhHhc----ccc--cccccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMILD----RGF--VGVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~---~~vwvmnv~p~~~~~~l~~~~~----RGl--ig~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||.|.++..|.+.- ..|..+-+.| +.+..+-+ .++ +-+++.=.+.++.-+.+||+|++..
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE----NMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH----HHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence 479999999999999887621 1233322221 33322222 232 2222211222331137999999877
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
.+.... ....+|-|+-|+|+|||++++.+.
T Consensus 123 ~l~~~~------~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 123 GLRNVP------DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ccccCC------CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 665443 234688899999999999998653
No 185
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.76 E-value=6.3e-05 Score=80.77 Aligned_cols=97 Identities=22% Similarity=0.278 Sum_probs=69.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCCc--eEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLPA--MIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl~~--~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
..++|||||||+|.++..-++.| ...|.++|.|.-+ +.| +.++... .+..+.++.+.+|-...|+|++...
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 45799999999999999999998 4578999987543 444 3445433 3455566666666779999999754
Q ss_pred ccccc--cCHHHHHHHHHhcccCCeEEE
Q 005959 327 GVDWD--QKDGILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 327 ll~~~--~d~~~~L~Ei~RvLKPGG~Lv 352 (667)
.+-.. .-....|-.=.+.|+|||.++
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 22221 223567777889999999987
No 186
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=97.76 E-value=2e-05 Score=82.48 Aligned_cols=98 Identities=22% Similarity=0.200 Sum_probs=64.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc-------c--cccccccccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-------F--VGVLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG-------l--ig~~~~~c~~f~typ~tyDl~H~~ 586 (667)
..|||+|||.|.++..|.+.-.+-. +|+-+|-. +.|..+-+|. . |-....=.+.+|.=..+||+|.++
T Consensus 75 ~~VLDlGcGtG~~~~~la~~~~~~~--~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 75 DRVLDLCCGSGDLAFLLSEKVGSDG--KVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CEEEEECCcCCHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 4799999999999988875211111 34555544 5565554442 1 122222234454323799999998
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
..+.... +...+|-||-|+|||||.+++.|
T Consensus 153 ~~l~~~~------d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 153 YGLRNVV------DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred cccccCC------CHHHHHHHHHHHcCcCcEEEEEE
Confidence 8776553 34678999999999999998864
No 187
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00012 Score=73.72 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=69.2
Q ss_pred CEEEEeCCCCchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcC---C------------CceEEeecccCCCCCCCCc
Q 005959 255 RTILDIGCGYGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERG---L------------PAMIGSFASKQLPYPSLSF 318 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~erg---l------------~~~~~~~da~~Lpfpd~sF 318 (667)
.+.||||.|+|.++.-++.. +.+....+|+|..++.++.++++- + ...++.+|....--+...|
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~Y 163 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPY 163 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCc
Confidence 78999999999999888743 333334489999999998876541 1 2345667766666667899
Q ss_pred cEEEecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 319 DMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 319 DlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
|.|||... .....+++...|+|||.+++-.
T Consensus 164 DaIhvGAa-------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 164 DAIHVGAA-------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred ceEEEccC-------ccccHHHHHHhhccCCeEEEee
Confidence 99999843 2345667888899999998854
No 188
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.73 E-value=2.3e-05 Score=79.21 Aligned_cols=96 Identities=23% Similarity=0.394 Sum_probs=62.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccccc---cc-cccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG---VL-HDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGlig---~~-~~~c~~f~typ~tyDl~H~~~ 587 (667)
+.|||+|||.|+++..+.+....+ +|+-+|-. +++..+-+ .|+-+ ++ .|..+ . .+|.+||+|++..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~---~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~-~-~~~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHL---QLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK-D-PFPDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc-C-CCCCCCCEeehHH
Confidence 369999999999999887631122 23333333 44443333 35422 22 22211 1 2357899999988
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
+|.+.. +...++-++.|+|+|||++++.+.
T Consensus 76 ~l~~~~------~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 76 VIHHIK------DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHhCC------CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 887654 245789999999999999998753
No 189
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.70 E-value=1.1e-05 Score=72.09 Aligned_cols=97 Identities=27% Similarity=0.417 Sum_probs=59.0
Q ss_pred EEEeccccchhhhhhhhh--cCCCeEEEEeecCCCCCchhhHhc----ccccc----cccccccCCCCCCCccccccccC
Q 005959 518 NVLDMNAHFGGFNSALLE--KGKSVWVMNVVPTIGTNHLPMILD----RGFVG----VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~--~~~~vwvmnv~p~~~~~~l~~~~~----RGlig----~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.|||+|||.|.++.+|.+ ....|..+=..| ..+..+-+ .+.-. +..|+ ..-...+..||+|.+..
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGARVVGVDISP----EMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSEEEEEESSH----HHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 689999999999999987 444433332222 33333222 23322 22333 22244455699999999
Q ss_pred -ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 -LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 -~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.+..+. +......+|=++-+.|+|||++++.+
T Consensus 79 ~~~~~~~---~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFLL---PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGCC---HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Ccccccc---chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 333232 11223356778999999999999975
No 190
>PLN02823 spermine synthase
Probab=97.69 E-value=0.00029 Score=76.50 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=71.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccC-CCCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQ-LPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~-Lpfpd~sFDlV~ 322 (667)
.+++||.||+|.|..+..+++.. ....++.+|+++.+++.|++.. ..+.+...|+.. +...+++||+|+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 45799999999999999888763 3457999999999999998642 233445555433 233457899999
Q ss_pred ecccccccccC------HHHHHH-HHHhcccCCeEEEEEe
Q 005959 323 CARCGVDWDQK------DGILLL-EVDRVLKPGGYFVWTS 355 (667)
Q Consensus 323 ~s~~ll~~~~d------~~~~L~-Ei~RvLKPGG~Lvis~ 355 (667)
+-.. -.+... ...+++ .+.+.|+|||++++..
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 8732 111100 135777 8999999999998764
No 191
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.66 E-value=0.00014 Score=77.67 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=62.7
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--CCceEEe
Q 005959 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGS 305 (667)
Q Consensus 232 ~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g--l~~~~~~ 305 (667)
...+.+.+.+.... ..+|||||||+|.+|..+++.+ ..++++|+++.|++.++++ + .++.+..
T Consensus 23 ~i~~~Iv~~~~~~~--------~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~ 91 (294)
T PTZ00338 23 LVLDKIVEKAAIKP--------TDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIE 91 (294)
T ss_pred HHHHHHHHhcCCCC--------cCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 34445555544333 3789999999999999999874 4589999999999988764 2 2466777
Q ss_pred ecccCCCCCCCCccEEEecccccccc
Q 005959 306 FASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 306 ~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
+|+...+++ .||+|+++.- +++.
T Consensus 92 ~Dal~~~~~--~~d~VvaNlP-Y~Is 114 (294)
T PTZ00338 92 GDALKTEFP--YFDVCVANVP-YQIS 114 (294)
T ss_pred CCHhhhccc--ccCEEEecCC-cccC
Confidence 887766654 6899998854 4443
No 192
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.66 E-value=7.7e-05 Score=81.60 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=80.7
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEeccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..++|+|||.|....+++.. ....++++|.++..+..+... ++ ...++..+....||++++||.+.+..+ .
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~-~ 188 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV-V 188 (364)
T ss_pred ccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee-c
Confidence 47999999999999998765 345688999998887665433 22 223466788899999999999999988 4
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.+.++...+++|++|+++|||+++..+..
T Consensus 189 ~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 189 CHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred ccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 45678899999999999999999987654
No 193
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.66 E-value=4.6e-05 Score=78.63 Aligned_cols=94 Identities=21% Similarity=0.225 Sum_probs=61.9
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc-cc-cccccccCCCCCCCccccccccCccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VG-VLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl-ig-~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
..+|||+|||.|.++..|.+....| +-.|-. ..+..+-+++- +. +..|. +.++..+.+||+|-++..+. |
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v-----~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~l~-~ 115 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGSQV-----TALDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLAVQ-W 115 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCCeE-----EEEECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECchhh-h
Confidence 4579999999999999887633333 333332 44444544431 11 12232 34444447999999876654 2
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
. -+...+|-||-|+|+|||++++.
T Consensus 116 ~-----~d~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 116 C-----GNLSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred c-----CCHHHHHHHHHHHcCCCeEEEEE
Confidence 2 23567899999999999999986
No 194
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.64 E-value=0.00044 Score=72.75 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=93.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHH---HHHHc----C-------------------------CC
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ---LTLER----G-------------------------LP 300 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~---~A~er----g-------------------------l~ 300 (667)
...+||-=|||.|.++..++.+|+. +.+.|.|--|+- +.... + ++
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~---~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYA---VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccce---EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 4468999999999999999999764 799999999962 22211 0 00
Q ss_pred -------------ceEEeecccCCCCCC---CCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhh
Q 005959 301 -------------AMIGSFASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL 364 (667)
Q Consensus 301 -------------~~~~~~da~~Lpfpd---~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~l 364 (667)
.....+|...+..++ ++||+|++.+- +....+.-..|..|.++|||||+++=..|...+....
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FF-IDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~ 211 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFF-IDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM 211 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEE-eechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence 001122222222233 69999998854 6656677789999999999999888877766543221
Q ss_pred --hh-HHHHhhhhhhhhhhhccceEEeeccC
Q 005959 365 --RN-KENQKRWNFVRDFVENLCWELVSQQD 392 (667)
Q Consensus 365 --r~-~e~~~~W~~ie~l~~~~~W~ll~~~~ 392 (667)
.+ ....-.|+++..+.+..+|+.+.+..
T Consensus 212 ~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 212 SIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 11 11345689999999999999986543
No 195
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.63 E-value=0.0001 Score=72.34 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=80.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc-cc-cccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF-VG-VLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl-ig-~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
..|||+|||.|.++.++.+.. + .|+-+|-. ..+..+-+ .|+ +- +..|+.+.+ +.+||+|-++-.|
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~-~----~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~fD~Vi~n~p~ 92 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKG-K----CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---RGKFDVILFNPPY 92 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcC-C----EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---CCcccEEEECCCC
Confidence 459999999999999998732 2 33434432 33322221 122 11 223444432 4689999988666
Q ss_pred ccccCC---------------CCCCCcchhheeccccccCCcEEEEEcCHHH-HHHHHHHHhhCCCeeEEeeeccCCCcc
Q 005959 590 SLESGH---------------RHRCSTLDIFTEIDRILRPEGWVIIRDTARL-IESARALTTRLKWDARVIEIESNSDER 653 (667)
Q Consensus 590 ~~~~~~---------------~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~-~~~~~~~~~~~~W~~~~~~~~~~~~~~ 653 (667)
...... ..++.+..+|-++.|+|+|||.+++.+.... ..++.++++..-|+........-.-+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~~ 172 (179)
T TIGR00537 93 LPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGLFFEE 172 (179)
T ss_pred CCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeecCceE
Confidence 433210 0122356789999999999999998765544 667777777778887777533333344
Q ss_pred EEE
Q 005959 654 LLI 656 (667)
Q Consensus 654 ~li 656 (667)
+.+
T Consensus 173 ~~~ 175 (179)
T TIGR00537 173 LFA 175 (179)
T ss_pred EEE
Confidence 433
No 196
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00028 Score=70.08 Aligned_cols=68 Identities=12% Similarity=0.106 Sum_probs=54.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCceEEeecccCCCCCCCCccEEEecc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCAR 325 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~da~~Lpfpd~sFDlV~~s~ 325 (667)
.+++|+|+|||||.++...+-.| ...|+++|+++++++.++++. ..+.+..+|+.+. ...||.|+.+-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~---~~~~dtvimNP 116 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF---RGKFDTVIMNP 116 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc---CCccceEEECC
Confidence 45789999999999998888776 346899999999999887652 3577777777665 46789998874
No 197
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.60 E-value=4e-05 Score=79.49 Aligned_cols=94 Identities=16% Similarity=0.225 Sum_probs=64.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccccccccccCCCCCCCccccccccCccccccCC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~ 595 (667)
..|||+|||.|.++.+|.+. .|- ..|+=+|-. ..+..+-++++-=+..|- +.++ ...+||+|+++.+|....
T Consensus 31 ~~vLDlGcG~G~~~~~l~~~-~p~--~~v~gvD~s~~~~~~a~~~~~~~~~~d~-~~~~-~~~~fD~v~~~~~l~~~~-- 103 (255)
T PRK14103 31 RRVVDLGCGPGNLTRYLARR-WPG--AVIEALDSSPEMVAAARERGVDARTGDV-RDWK-PKPDTDVVVSNAALQWVP-- 103 (255)
T ss_pred CEEEEEcCCCCHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHhcCCcEEEcCh-hhCC-CCCCceEEEEehhhhhCC--
Confidence 67999999999999999863 121 234444443 666667777742122232 2222 236899999999886553
Q ss_pred CCCCCcchhheeccccccCCcEEEEE
Q 005959 596 RHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+...+|-|+-|+|+|||++++.
T Consensus 104 ----d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 104 ----EHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ----CHHHHHHHHHHhCCCCcEEEEE
Confidence 2356889999999999999986
No 198
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.60 E-value=3.8e-05 Score=82.81 Aligned_cols=96 Identities=24% Similarity=0.340 Sum_probs=59.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc--cc---cccccccccCCCCCCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GF---VGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R--Gl---ig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
+.|||+|||.|.|+..|++.+ +-.|.-|=|.... .+...+ .+ +. |-+...=-+.+|. +.+||+|+|.+++.
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~-~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAV-RKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHH-HHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 689999999999999998743 2223222221110 111111 11 10 1111111134454 78999999988876
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+. -+...+|-++-|.|+|||.+|+.
T Consensus 201 H~------~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 201 HR------RSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred cc------CCHHHHHHHHHHhcCCCcEEEEE
Confidence 43 34567899999999999999985
No 199
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.60 E-value=0.00034 Score=75.52 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=83.0
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEe
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGS 305 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~ 305 (667)
+.+.+.+..+.....| ..|||==||||.+.....-. ...++|.|++..|++-|+.+ ++. ..+..
T Consensus 183 P~lAR~mVNLa~v~~G--------~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~ 251 (347)
T COG1041 183 PRLARAMVNLARVKRG--------ELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIEDYPVLK 251 (347)
T ss_pred HHHHHHHHHHhccccC--------CEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCceeEEE
Confidence 3444455555554444 79999999999997766544 46689999999999888754 222 22333
Q ss_pred e-cccCCCCCCCCccEEEeccc-----ccccc---cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 306 F-ASKQLPYPSLSFDMLHCARC-----GVDWD---QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 306 ~-da~~Lpfpd~sFDlV~~s~~-----ll~~~---~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+ |+..+|+++++||.|++-.- ..... +-...+|..+.++|++||++++..|
T Consensus 252 ~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 252 VLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 4 99999999999999998521 01111 1125799999999999999999988
No 200
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.58 E-value=2.4e-05 Score=81.12 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=62.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccccc---ccc-ccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVG---VLH-DWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGlig---~~~-~~c~~f~typ~tyDl~H~~~ 587 (667)
..|||+|||.|.++..|.+.+. +|+-+|-. ..+..+-+ .|+.. +.+ |..+--+..+.+||+|.|..
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~-----~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGH-----QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 4899999999999999987433 44444543 44444433 34421 111 22211112248999999999
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
++.... +...+|-|+-|+|+|||++++-
T Consensus 121 vl~~~~------~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 121 VLEWVA------DPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred HHHhhC------CHHHHHHHHHHHcCCCeEEEEE
Confidence 887654 2246899999999999999874
No 201
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.57 E-value=0.00022 Score=72.79 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=94.9
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C---CCceE
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G---LPAMI 303 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g---l~~~~ 303 (667)
+.+.+.+.+.-..++ ..+.+|||.-.|-|.++...+++|. ..|..++.++..++.|..+ + ..+.+
T Consensus 118 dP~~Dt~~Kv~~V~~------~~G~rVLDtC~GLGYtAi~a~~rGA--~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~i 189 (287)
T COG2521 118 DPLEDTLAKVELVKV------KRGERVLDTCTGLGYTAIEALERGA--IHVITVEKDPNVLELAKLNPWSRELFEIAIKI 189 (287)
T ss_pred CcHHHHHhhhheecc------ccCCEeeeeccCccHHHHHHHHcCC--cEEEEEeeCCCeEEeeccCCCCccccccccEE
Confidence 445555555543322 2568999999999999999999984 3577788888888887643 1 23456
Q ss_pred EeecccCC--CCCCCCccEEEecccccccccC--HHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhh
Q 005959 304 GSFASKQL--PYPSLSFDMLHCARCGVDWDQK--DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDF 379 (667)
Q Consensus 304 ~~~da~~L--pfpd~sFDlV~~s~~ll~~~~d--~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l 379 (667)
..+|+.++ .|+|.+||+|+-----+..... -+.+..|++|+|||||.++-.+-.+.....-. .....+.+.
T Consensus 190 ilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~-----d~~~gVa~R 264 (287)
T COG2521 190 ILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGL-----DLPKGVAER 264 (287)
T ss_pred ecccHHHHHhcCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccC-----ChhHHHHHH
Confidence 66666554 3889999999854222222111 25799999999999999997766554321111 122334444
Q ss_pred hhccceEEeec
Q 005959 380 VENLCWELVSQ 390 (667)
Q Consensus 380 ~~~~~W~ll~~ 390 (667)
..+.+|+.+..
T Consensus 265 Lr~vGF~~v~~ 275 (287)
T COG2521 265 LRRVGFEVVKK 275 (287)
T ss_pred HHhcCceeeee
Confidence 55667765433
No 202
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00056 Score=67.55 Aligned_cols=106 Identities=20% Similarity=0.184 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH----HHHcCCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~----A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+..+||||||+|..+..|++.-.......+.|+++.+++. |+.++..+..++.|...- ...++.|+++.+.-..
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~-l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG-LRNESVDVLVFNPPYV 121 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh-hccCCccEEEECCCcC
Confidence 35789999999999999999875455667899999988765 444555555555553322 2337888888764311
Q ss_pred c--------------cc--cC----HHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 329 D--------------WD--QK----DGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 329 ~--------------~~--~d----~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
. |. .+ ..+++..+..+|.|.|.|++.....+
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 1 11 11 13577788889999999999876544
No 203
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=97.56 E-value=5.4e-05 Score=75.04 Aligned_cols=116 Identities=12% Similarity=0.253 Sum_probs=73.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhH----hcccc--ccccc-ccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF--VGVLH-DWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~----~~RGl--ig~~~-~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++..|... .+- ..|+-+|.. ..+.++ -+.|+ |-+++ |. +.++ ...+||+|-+..
T Consensus 44 ~~vLDiGcGtG~~s~~la~~-~~~--~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~-~~~~-~~~~fD~I~s~~- 117 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIA-RPE--LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRA-EDFQ-HEEQFDVITSRA- 117 (181)
T ss_pred CeEEEecCCCCccHHHHHHH-CCC--CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecch-hhcc-ccCCccEEEehh-
Confidence 58999999999888776532 111 123444443 323222 22343 22222 22 2222 247999998854
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCC-CeeEEeeec
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLK-WDARVIEIE 647 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~-W~~~~~~~~ 647 (667)
+ ..+.+++-++.|+|+|||.+++........++..+.+++| |.....+..
T Consensus 118 ~---------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 168 (181)
T TIGR00138 118 L---------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVP 168 (181)
T ss_pred h---------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeecc
Confidence 2 2344677788999999999999988888888888888876 666665443
No 204
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.55 E-value=3.5e-05 Score=80.68 Aligned_cols=97 Identities=22% Similarity=0.291 Sum_probs=60.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc----ccc-cccccc-cCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVG-VLHDWC-EAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG----lig-~~~~~c-~~f~typ~tyDl~H~~~~~ 589 (667)
..|||+|||+|+++..|... .. ..|+-+|-. +.+..+-+|- -|- +..|.. .+|+ +.+||+|++..++
T Consensus 54 ~~VLDiGcG~G~~a~~la~~-~~---~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~--~~~FD~V~s~~~l 127 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEK-YG---AHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFP--ENTFDMIYSRDAI 127 (263)
T ss_pred CEEEEEcCCCChhhHHHHhh-cC---CEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCC--CCCeEEEEEhhhH
Confidence 46999999999999888652 22 134444433 4444444431 111 112221 2333 2799999997665
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
.+.. ......+|-|+-|+|+|||++++.|-
T Consensus 128 ~h~~----~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 128 LHLS----YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HhCC----HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5432 12455789999999999999999753
No 205
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=97.50 E-value=3.3e-05 Score=81.53 Aligned_cols=97 Identities=19% Similarity=0.369 Sum_probs=63.0
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhh----HhcccccccccccccCCCCCCCccccccccCcccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPM----ILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~----~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
.|||+|||.||++-++.+. ..+=|-.|.. +++|+.. |-++||-....--+.-|...+-+||-|=+-+.|-+..
T Consensus 65 ~vLDiGcGwG~~~~~~a~~-~g~~v~gitl--S~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Ehvg 141 (273)
T PF02353_consen 65 RVLDIGCGWGGLAIYAAER-YGCHVTGITL--SEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFEHVG 141 (273)
T ss_dssp EEEEES-TTSHHHHHHHHH-H--EEEEEES---HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGGGTC
T ss_pred EEEEeCCCccHHHHHHHHH-cCcEEEEEEC--CHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechhhcC
Confidence 8999999999999999983 2554433332 2256554 4578875444433344444455899988888877652
Q ss_pred CCCCCCCcchhheeccccccCCcEEEEE
Q 005959 594 GHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+-....++-.++|+|+|||.+++.
T Consensus 142 ----~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 142 ----RKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ----GGGHHHHHHHHHHHSETTEEEEEE
T ss_pred ----hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 245567899999999999999975
No 206
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.48 E-value=0.00014 Score=76.41 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=57.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc-cc-cccccc-cCCCCCCCccccccccCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VG-VLHDWC-EAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl-ig-~~~~~c-~~f~typ~tyDl~H~~~~~~~~ 592 (667)
.+|||+|||.|.++..|.+.-.+.=..+|+-.|-. +.+..+-+|.- +. +..|-. .||+ +.+||+|.+. |+
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~--~~sfD~I~~~--~~-- 160 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFA--DQSLDAIIRI--YA-- 160 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCc--CCceeEEEEe--cC--
Confidence 56999999999999998762111101245555654 66666655531 11 112222 2444 3799999862 22
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
...+-|+.|+|+|||++|+..
T Consensus 161 ---------~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 161 ---------PCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred ---------CCCHHHHHhhccCCCEEEEEe
Confidence 124579999999999999864
No 207
>PRK08317 hypothetical protein; Provisional
Probab=97.48 E-value=0.00012 Score=73.45 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=61.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc--cccccc----cccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVL----HDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R--Glig~~----~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
.+|||+|||.|.++..+.+.-.+- -+|+-+|.. ..+..+-++ +..... .|.. .++.-+.+||+||+..+|
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~~~--~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~v~~~~~~ 97 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVGPE--GRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD-GLPFPDGSFDAVRSDRVL 97 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcCCC--cEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccc-cCCCCCCCceEEEEechh
Confidence 479999999999999887521010 133444433 555555554 111111 1221 122223789999999988
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.... +...++-++-|+|+|||++++.+
T Consensus 98 ~~~~------~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 98 QHLE------DPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hccC------CHHHHHHHHHHHhcCCcEEEEEe
Confidence 7664 24568899999999999999854
No 208
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.46 E-value=0.00048 Score=71.76 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=70.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC-CCC------CCCCccE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LPY------PSLSFDM 320 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-Lpf------pd~sFDl 320 (667)
+++|||||+++|..+..|++.-.....++.+|.++...+.|++. |+ .+.+..+++.. |+- ..++||+
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~ 159 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDF 159 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccE
Confidence 57999999999999999987532346799999999988887643 43 34455555432 221 1368999
Q ss_pred EEecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 321 V~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
|+.-.- .......+..+.+.|+|||.+++..
T Consensus 160 iFiDad----K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 160 IFVDAD----KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred EEecCC----HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 997632 3344578888899999999988754
No 209
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.46 E-value=0.0021 Score=64.23 Aligned_cols=99 Identities=15% Similarity=0.003 Sum_probs=66.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccC-CC-C-CC-CCccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQ-LP-Y-PS-LSFDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~-Lp-f-pd-~sFDlV~~ 323 (667)
..+|||++||+|.++..++.+|. ..++++|.++.+++.+++. +. .+.+...|+.. +. + .. ..||+|+.
T Consensus 50 g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 47899999999999999999974 3689999999998777543 33 24566666633 22 1 12 24788877
Q ss_pred cccccccccCHHHHHHHH--HhcccCCeEEEEEeC
Q 005959 324 ARCGVDWDQKDGILLLEV--DRVLKPGGYFVWTSP 356 (667)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei--~RvLKPGG~Lvis~p 356 (667)
--- +.. .....++..+ ..+|+++|.+++...
T Consensus 128 DPP-y~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 128 DPP-FFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred CcC-CCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 543 221 2233444444 347899998887644
No 210
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.44 E-value=0.00068 Score=67.09 Aligned_cols=100 Identities=23% Similarity=0.194 Sum_probs=66.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCcee--------EEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCcc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTM--------CIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFD 319 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~--------sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFD 319 (667)
...|||-=||+|++....+..+.... .+.+.|+++.+++.|+++ ++ .+.+.+.|+..+++.++++|
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d 108 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVD 108 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCC
Confidence 47899999999999876654432222 388999999999887654 33 34577889999998888999
Q ss_pred EEEeccccccc-cc---CH----HHHHHHHHhcccCCeEEEEE
Q 005959 320 MLHCARCGVDW-DQ---KD----GILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 320 lV~~s~~ll~~-~~---d~----~~~L~Ei~RvLKPGG~Lvis 354 (667)
+|+++.- +.. .. +. ..+++++.++|++...+++.
T Consensus 109 ~IvtnPP-yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 109 AIVTNPP-YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEEE---STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEEECcc-hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 9999843 111 11 11 35789999999994444444
No 211
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.43 E-value=0.00016 Score=71.39 Aligned_cols=111 Identities=17% Similarity=0.105 Sum_probs=69.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccccccccccc-cCCCCCCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWC-EAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGlig~~~~~c-~~f~typ~tyDl~H~~~~~~ 590 (667)
.+|||+|||.|.++.++.... +- .+|+-.|-. ..+..+-+ .|+-. +.-.+ .....++..||+|.+++..
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~-~~--~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~~~~~~D~v~~~~~~- 107 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQF-PS--LQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIELPGKADAIFIGGSG- 107 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHC-CC--CEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhhcCcCCCEEEECCCc-
Confidence 479999999999998887631 21 133333432 33333321 23211 11011 1112345789999986543
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEc-CHHHHHHHHHHHhhCCCe
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD-TARLIESARALTTRLKWD 640 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d-~~~~~~~~~~~~~~~~W~ 640 (667)
..+..++-++-|+|+|||++++.. ..+..+++.++++...++
T Consensus 108 --------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 108 --------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVS 150 (187)
T ss_pred --------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCC
Confidence 234568888999999999999976 456678888888888885
No 212
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=97.42 E-value=0.00016 Score=76.75 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=67.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccccccccccCC-CCCCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAF-PTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig~~~~~c~~f-~typ~tyDl~H~~~~~~ 590 (667)
.+|||+|||.|.++.++...+. -.|+-+|-. ..+..+.++ |+-..+...+... +..+..||+|.|+.+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~----~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGA----AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCC----CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH
Confidence 5899999999998877765221 123333433 333333332 2211122222212 22246899999965543
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEcC-HHHHHHHHHHHhhCCCeeEEe
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 644 (667)
.. ..++-++-|+|+|||+++++.- .+..+++.+..++- |+....
T Consensus 237 ~l---------~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 237 VI---------KELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred HH---------HHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 32 3578899999999999999754 23455666655665 766544
No 213
>PRK00536 speE spermidine synthase; Provisional
Probab=97.41 E-value=0.0014 Score=68.80 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=70.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---------CCceEEeecccCCCCCCCCccEEEe
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---------LPAMIGSFASKQLPYPSLSFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---------l~~~~~~~da~~Lpfpd~sFDlV~~ 323 (667)
.+++||=||.|.|..++.++++. .+|+.+|+++.+++.+++-- ..+.+.. .. ..-..++||+|++
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~---~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~--~~~~~~~fDVIIv 145 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD---THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL--LDLDIKKYDLIIC 145 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC---CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh--hhccCCcCCEEEE
Confidence 57899999999999999999984 38999999999999998731 1222221 11 1112368999997
Q ss_pred cccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
-.. ....+.+.++|.|+|||.++...-.+
T Consensus 146 Ds~------~~~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 146 LQE------PDIHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred cCC------CChHHHHHHHHhcCCCcEEEECCCCc
Confidence 732 23568899999999999999975443
No 214
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.40 E-value=0.00037 Score=72.37 Aligned_cols=110 Identities=16% Similarity=0.207 Sum_probs=66.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccccccccccCCCCCCCccccccccCcccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
.+|||+|||.|..+.++...+.. .|+-+|-. ..+..+-++ |+-...+ ++.-..+||+|.|+-....
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~----~v~giDis~~~l~~A~~n~~~~~~~~~~~-----~~~~~~~fD~Vvani~~~~ 191 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAK----KVLAVDIDPQAVEAARENAELNGVELNVY-----LPQGDLKADVIVANILANP 191 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCC----eEEEEECCHHHHHHHHHHHHHcCCCceEE-----EccCCCCcCEEEEcCcHHH
Confidence 57999999999888877653222 13333332 333333332 3311111 1110126999998543322
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEEcC-HHHHHHHHHHHhhCCCeeEEe
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~ 644 (667)
+..++-++-|+|+|||++|+++- .+..+++.+.++...+++...
T Consensus 192 ---------~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 192 ---------LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred ---------HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 23577799999999999999864 344667777778877876654
No 215
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.40 E-value=0.00016 Score=72.72 Aligned_cols=125 Identities=14% Similarity=0.060 Sum_probs=75.3
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc--cc-cccccccCCCC-C-CCccccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VG-VLHDWCEAFPT-Y-PRTYDLVHA 585 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl--ig-~~~~~c~~f~t-y-p~tyDl~H~ 585 (667)
-.+|||+|||.|.++..|.+. .+- -+|+-+|-. ..+..+-+ .|+ +- +..|..+.++. + +.+||+|.+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~-~p~--~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKA-NPD--INFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHH-CCC--ccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 468999999999999988752 111 123333332 33332221 232 11 22233233441 3 478999987
Q ss_pred cCccccccC---CCCCCCcchhheeccccccCCcEEEEE-cCHHHHHHHHHHHhhCCCeeEEe
Q 005959 586 EGLLSLESG---HRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 586 ~~~~~~~~~---~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~ 644 (667)
.... .|.. ...+.....+|-++.|+|+|||+|++. +.......+.+.+..--|.+.+.
T Consensus 118 ~~~~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~~~ 179 (202)
T PRK00121 118 NFPD-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLVSE 179 (202)
T ss_pred ECCC-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccccc
Confidence 5432 1210 002233567899999999999999996 66777777777777777877643
No 216
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.39 E-value=0.001 Score=74.35 Aligned_cols=99 Identities=26% Similarity=0.381 Sum_probs=81.7
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC----CceEEeecccCCCCCCCCccEEEecccccccc
Q 005959 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL----PAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 256 ~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl----~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
++|-+|||.-.+...+.+.|+. +|+.+|.|+..++....++. ...+...++..+.|++++||+|+--..+.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 8999999999999999998865 58899999999988877763 23567889999999999999999987755544
Q ss_pred cCH---------HHHHHHHHhcccCCeEEEEEeC
Q 005959 332 QKD---------GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 332 ~d~---------~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.+. ...+.+++|+|+|||+++....
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 332 2457899999999999887766
No 217
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.38 E-value=9.5e-05 Score=81.62 Aligned_cols=95 Identities=18% Similarity=0.314 Sum_probs=63.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc--ccccccccccCCCCCCCccccccccCcccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG--FVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG--lig~~~~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
..|||+|||.|+++..|.+. ..+ .|+-+|-. .++..+-+|. + . ..-.+..+...+.+||.|.+..+|.+..
T Consensus 169 ~rVLDIGcG~G~~a~~la~~-~g~---~V~giDlS~~~l~~A~~~~~~l-~-v~~~~~D~~~l~~~fD~Ivs~~~~ehvg 242 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEH-YGV---SVVGVTISAEQQKLAQERCAGL-P-VEIRLQDYRDLNGQFDRIVSVGMFEHVG 242 (383)
T ss_pred CEEEEeCCCccHHHHHHHHH-CCC---EEEEEeCCHHHHHHHHHHhccC-e-EEEEECchhhcCCCCCEEEEeCchhhCC
Confidence 37999999999999988762 232 34444443 6666665543 2 1 1111122222357899999988876542
Q ss_pred CCCCCCCcchhheeccccccCCcEEEEE
Q 005959 594 GHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.-....++-++.|+|+|||++++.
T Consensus 243 ----~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 243 ----PKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred ----hHHHHHHHHHHHHHcCCCcEEEEE
Confidence 234557899999999999999985
No 218
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.37 E-value=0.0016 Score=73.82 Aligned_cols=108 Identities=22% Similarity=0.350 Sum_probs=74.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCC-CCCCCccEEE----
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLH---- 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lp-fpd~sFDlV~---- 322 (667)
++.+|||++||+|.=|.++++.--....++++|+++.-++..+++ |+. +.+...|...++ ...+.||.|+
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaP 192 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAP 192 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCC
Confidence 458999999999999999987632334789999998887665433 554 345556665543 2245799999
Q ss_pred eccccc---------ccccC--------HHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 323 CARCGV---------DWDQK--------DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 323 ~s~~ll---------~~~~d--------~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
|+.... .|.+. ..++|....+.|||||+++.++-....
T Consensus 193 CSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 193 CSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred CCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 653211 11100 135788999999999999999876554
No 219
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.36 E-value=9.9e-05 Score=74.35 Aligned_cols=96 Identities=20% Similarity=0.252 Sum_probs=60.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc---ccccccccccCCCCCCCccccccccCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG---FVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG---lig~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
..|||+|||.|.|...|.+....+ .++-+|.. ..+..+-++. +.-+..|. +.++..+.+||+|.++.++...
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQA---EFIALDISAGMLAQAKTKLSENVQFICGDA-EKLPLEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCC---cEEEEeChHHHHHHHHHhcCCCCeEEecch-hhCCCCCCceeEEEEhhhhhhc
Confidence 579999999999999998632111 12333322 2232233321 11122222 2334445899999998887644
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
. +...+|-++.|+|+|||++++..
T Consensus 112 ~------~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 112 D------DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred c------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 2 35579999999999999999863
No 220
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=97.33 E-value=9.8e-05 Score=79.71 Aligned_cols=95 Identities=13% Similarity=0.184 Sum_probs=66.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc---cccccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl---ig~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
..|||+|||.|.|+-.|...+. +|+-+|.. ..+.++-++ ++ |-.++.=.+.++..+.+||+|=|..+
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~-----~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGA-----TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV 207 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCC-----EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence 3799999999999998876322 45555655 555555443 22 22222223445544579999999998
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+.+.. +...+|-|+-|+|+|||.+++.+
T Consensus 208 LeHv~------d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 208 IEHVA------NPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HHhcC------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 87764 34579999999999999999874
No 221
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.32 E-value=0.00059 Score=71.05 Aligned_cols=138 Identities=20% Similarity=0.287 Sum_probs=80.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc---cc----cccccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR---GF----VGVLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R---Gl----ig~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++.+|... .+- ..|+-+|.. ..+..+-++ +. -=+..|+-++++ +.+||+|-++--
T Consensus 110 ~~vLDiG~GsG~~~~~la~~-~~~--~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~--~~~fD~Iv~npP 184 (275)
T PRK09328 110 LRVLDLGTGSGAIALALAKE-RPD--AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP--GGRFDLIVSNPP 184 (275)
T ss_pred CEEEEEcCcHHHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC--CCceeEEEECCC
Confidence 36999999999999999863 221 234444443 333333332 21 112235544444 378999987543
Q ss_pred cccccCC----C-------------CCCC---cchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEeeecc
Q 005959 589 LSLESGH----R-------------HRCS---TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIES 648 (667)
Q Consensus 589 ~~~~~~~----~-------------~~c~---~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~~~ 648 (667)
+.....- . .... +..++-++-++|+|||++++.-....-+.++.+.+...+.......+-
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d~ 264 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKDL 264 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecCC
Confidence 3211100 0 0000 124666777999999999996544455667777777666533333344
Q ss_pred CCCccEEEEEc
Q 005959 649 NSDERLLICQK 659 (667)
Q Consensus 649 ~~~~~~li~~K 659 (667)
.+.+++++++|
T Consensus 265 ~~~~r~~~~~~ 275 (275)
T PRK09328 265 AGRDRVVLGRR 275 (275)
T ss_pred CCCceEEEEEC
Confidence 56788888765
No 222
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.32 E-value=0.00014 Score=78.32 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=59.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh----cccccccccccccCCCCCCCccccccccCcccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~----~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
+.|||+|||.|.++.+|+..+ .--|.-|=|.... .+...+- ..+-+.+...=-+.++. +.+||+|-|.+++.+
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-~~~FD~V~s~gvL~H 200 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-LYAFDTVFSMGVLYH 200 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-CCCcCEEEEcchhhc
Confidence 689999999999998887632 2233333333221 2211110 11111111100122332 248999999998865
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.. +...+|-|+-|+|||||.+|+.
T Consensus 201 ~~------dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 201 RK------SPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred cC------CHHHHHHHHHHhcCCCCEEEEE
Confidence 43 4568999999999999999985
No 223
>PTZ00146 fibrillarin; Provisional
Probab=97.32 E-value=0.0007 Score=71.97 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=65.1
Q ss_pred CCCCCCceeEEEeccccchhhhhhhhhc---CCCeEEEEeecCCCCCchhhHhcc-cccccccccccCC--CCCCCcccc
Q 005959 509 PSPPYNMVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAF--PTYPRTYDL 582 (667)
Q Consensus 509 ~~~~~~~~R~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~~~l~~~~~R-Glig~~~~~c~~f--~typ~tyDl 582 (667)
..+..++ +|||+|||.|+|..+|.+. +-.|+.+-+.|.-..+.+.++-+| +++-+..|-+.+. ...+-++|+
T Consensus 128 l~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDv 205 (293)
T PTZ00146 128 IPIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDV 205 (293)
T ss_pred eccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCE
Confidence 4455553 7999999999999999873 123555554432222344455444 5777777876542 111246888
Q ss_pred ccccCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 583 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
|-++-.. . + ....+++|+.|+|+|||+|+|.
T Consensus 206 V~~Dva~-p-----d--q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVAQ-P-----D--QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCCC-c-----c--hHHHHHHHHHHhccCCCEEEEE
Confidence 8664421 1 1 1224677999999999999983
No 224
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.30 E-value=0.00043 Score=67.88 Aligned_cols=99 Identities=18% Similarity=0.137 Sum_probs=59.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecc------cCCC--C--CCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS------KQLP--Y--PSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da------~~Lp--f--pd~sFDlV~ 322 (667)
...+|||+||++|.|+..+++++.....|+++|..+.. ....+...++|. ..+. + ..+.||+|+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD------PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc------cccceeeeecccchhhHHHhhhhhccccccCcceec
Confidence 45899999999999999999996556789999997651 001111111111 1111 1 226899999
Q ss_pred ecccccccc----cCH-------HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 323 CARCGVDWD----QKD-------GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 323 ~s~~ll~~~----~d~-------~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
|-.+ .... .+. ...+.-+...|+|||.+++-....
T Consensus 97 ~D~~-~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 97 SDMA-PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp E--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred cccc-cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 9752 2211 111 134555567899999999887653
No 225
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.28 E-value=0.0015 Score=72.31 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=70.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCCCCCCCccEEEecccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
.+|||++||+|.++..++... ....|+++|.++.+++.++++ ++. ..+...|+..+....+.||+|+..--
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~-~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALET-GVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 589999999999999998652 234699999999999887653 343 33666666553221457999998631
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
..+..++....+.+++||++.++.
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 223567888788899999999984
No 226
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.27 E-value=0.0023 Score=63.88 Aligned_cols=93 Identities=27% Similarity=0.304 Sum_probs=69.6
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCC-ceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLP-AMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 256 ~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl~-~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
+++|||+|.|.-+..|+=. .+...++.+|....-+.+. .+-++. +.+....++. +....+||+|++-.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~-~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv---- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIA-RPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAV---- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESS----
T ss_pred eEEecCCCCCChhHHHHHh-CCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehh----
Confidence 7999999999988887754 2456799999998766543 344665 6677777777 556679999998754
Q ss_pred ccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 331 DQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.....++.-+.+.|++||.+++.-
T Consensus 125 -~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 125 -APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 345688999999999999998864
No 227
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.27 E-value=0.0019 Score=68.27 Aligned_cols=105 Identities=17% Similarity=0.103 Sum_probs=66.7
Q ss_pred cCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCCce---EE-eecccCCCCCCCCccEEEec
Q 005959 252 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLPAM---IG-SFASKQLPYPSLSFDMLHCA 324 (667)
Q Consensus 252 ~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~~~---~~-~~da~~Lpfpd~sFDlV~~s 324 (667)
..+++|||+|||+|..+..+.+.--....++.+|.|+.|++.++.- ..... .. ..-....++. ..|+|+++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~DLvi~s 109 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP--PDDLVIAS 109 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC--CCcEEEEe
Confidence 4568999999999986655544311345789999999999877642 11111 00 0011123333 34999999
Q ss_pred ccccccccCH-HHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 325 RCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 325 ~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+++....+.. ..+++.+.+.+.+ +|+|.+++...
T Consensus 110 ~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 110 YVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred hhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 9977765421 3466666666655 99999997643
No 228
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.24 E-value=0.00053 Score=67.80 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=69.2
Q ss_pred eEEEeccccchhhhhhhhhcCC---CeEEEEeecCCCCCchhhHhcccccccccccccC---------CCCCCCcccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGK---SVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEA---------FPTYPRTYDLVH 584 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~---~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~---------f~typ~tyDl~H 584 (667)
.+|||+|||.|+++.++..... .|+..=+.|.. .+ .++--+.+|..+. ++ +.+||+|=
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-------~~-~~i~~~~~d~~~~~~~~~l~~~~~--~~~~D~V~ 103 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-------PI-ENVDFIRGDFTDEEVLNKIRERVG--DDKVDVVM 103 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-------cC-CCceEEEeeCCChhHHHHHHHHhC--CCCccEEE
Confidence 4899999999999887765211 24444333321 00 1222222344332 22 26799988
Q ss_pred ccCccc--c-ccC--CCCCCCcchhheeccccccCCcEEEEE-cC----HHHHHHHHHHHhhCCCeeEEeeecc---CCC
Q 005959 585 AEGLLS--L-ESG--HRHRCSTLDIFTEIDRILRPEGWVIIR-DT----ARLIESARALTTRLKWDARVIEIES---NSD 651 (667)
Q Consensus 585 ~~~~~~--~-~~~--~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~----~~~~~~~~~~~~~~~W~~~~~~~~~---~~~ 651 (667)
++.... . +.- ....+.+..+|-++-|+|+|||.+++. .. .+++++++. .+ |+..+...-. .+.
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~---~~-~~~~~~~~~~~~~~~~ 179 (188)
T TIGR00438 104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRK---LF-EKVKVTKPQASRKRSA 179 (188)
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHh---hh-ceEEEeCCCCCCcccc
Confidence 754311 1 100 001123457899999999999999994 22 233333333 22 5555553222 235
Q ss_pred ccEEEEE
Q 005959 652 ERLLICQ 658 (667)
Q Consensus 652 ~~~li~~ 658 (667)
|..+||.
T Consensus 180 ~~~~~~~ 186 (188)
T TIGR00438 180 EVYIVAK 186 (188)
T ss_pred eEEEEEe
Confidence 8888874
No 229
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.23 E-value=0.00049 Score=71.21 Aligned_cols=112 Identities=21% Similarity=0.337 Sum_probs=67.2
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc----c-cccccccccCCCCCCCccccccccCcc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----F-VGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG----l-ig~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
-.+|||+|||.|.++..|.+. .+- -+|+=+|-. ..+..+-++- + .+-+.+| .+ +.+||+|+++.+|
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~-~~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~---~~--~~~fD~v~~~~~l 103 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVER-WPA--ARITGIDSSPAMLAEARSRLPDCQFVEADIASW---QP--PQALDLIFANASL 103 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHhCCCCeEEECchhcc---CC--CCCccEEEEccCh
Confidence 468999999999999988763 111 123333332 3333333321 1 1222222 22 3689999999988
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEcC--H--HHHHHHHHHHhhCCCee
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--A--RLIESARALTTRLKWDA 641 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~--~--~~~~~~~~~~~~~~W~~ 641 (667)
.... +...+|-+|-|+|+|||.+++.-. . .....+++++....|..
T Consensus 104 ~~~~------d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 104 QWLP------DHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred hhCC------CHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 6543 245789999999999999998621 1 12223445555555553
No 230
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.23 E-value=0.0015 Score=66.28 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=78.5
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCC---CCCCccEEEecccccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPY---PSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpf---pd~sFDlV~~s~~ll~~~ 331 (667)
-++|||||=....... ..+ ...|+++|.++. ...+.+.|....|. +++.||+|.|+.+ +.+.
T Consensus 53 lrlLEVGals~~N~~s--~~~--~fdvt~IDLns~----------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV-LNfV 117 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS--TSG--WFDVTRIDLNSQ----------HPGILQQDFMERPLPKNESEKFDVISLSLV-LNFV 117 (219)
T ss_pred ceEEeecccCCCCccc--ccC--ceeeEEeecCCC----------CCCceeeccccCCCCCCcccceeEEEEEEE-EeeC
Confidence 6899999975543222 222 345899998752 22234446666665 3679999999987 7788
Q ss_pred cCHH---HHHHHHHhcccCCeE-----EEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeecc
Q 005959 332 QKDG---ILLLEVDRVLKPGGY-----FVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ 391 (667)
Q Consensus 332 ~d~~---~~L~Ei~RvLKPGG~-----Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~~ 391 (667)
+++. ..++.+++.|+|+|. |++..|.+-..... .-.-+.+..+.+.+++..+..+
T Consensus 118 P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSR-----y~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 118 PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSR-----YMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhccc-----ccCHHHHHHHHHhCCcEEEEEE
Confidence 7773 699999999999999 88888754221110 1122345667788888877653
No 231
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.22 E-value=0.0005 Score=70.36 Aligned_cols=134 Identities=21% Similarity=0.315 Sum_probs=79.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh----cccc--ccc-ccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF--VGV-LHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~----~RGl--ig~-~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|.|+.++.+. .+- .+|+-.|-. ..+..+- ..|+ +-+ ..|+-+.++ +.+||+|-++--
T Consensus 89 ~~ilDig~G~G~~~~~l~~~-~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--~~~fD~Vi~npP 163 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKE-RPD--ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLP--GGKFDLIVSNPP 163 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCc--CCceeEEEECCC
Confidence 36999999999999999863 121 134444432 3333222 2343 112 224434443 278999998655
Q ss_pred cccccCC---CCCCC-----------------cchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEeeecc
Q 005959 589 LSLESGH---RHRCS-----------------TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIES 648 (667)
Q Consensus 589 ~~~~~~~---~~~c~-----------------~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~~~ 648 (667)
|...... ..... ...++-++-|+|+|||.+++.......++++++.+...++......+-
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCceEEEeCC
Confidence 4431100 00000 124677889999999999998776667788888888888755444343
Q ss_pred CCCccEE
Q 005959 649 NSDERLL 655 (667)
Q Consensus 649 ~~~~~~l 655 (667)
.+..+++
T Consensus 244 ~~~~r~~ 250 (251)
T TIGR03534 244 AGKDRVV 250 (251)
T ss_pred CCCcCee
Confidence 3444443
No 232
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.21 E-value=0.0011 Score=70.59 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=68.3
Q ss_pred cCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCCCCCCCccEEEecc
Q 005959 252 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLPYPSLSFDMLHCAR 325 (667)
Q Consensus 252 ~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lpfpd~sFDlV~~s~ 325 (667)
...+.|||+|||.|.++...++.|. ..|.+++.| +|.+.|++. ++ .+.++.+-++++.+|+ ..|+|++.-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE-k~DviISEP 251 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGA--KKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPE-KVDVIISEP 251 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCc--ceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCch-hccEEEecc
Confidence 3458899999999999999988874 468999876 577777643 22 2334556677777774 899999975
Q ss_pred cccccccC-HHHHHHHHHhcccCCeEEEE
Q 005959 326 CGVDWDQK-DGILLLEVDRVLKPGGYFVW 353 (667)
Q Consensus 326 ~ll~~~~d-~~~~L~Ei~RvLKPGG~Lvi 353 (667)
...-...+ .-...-..+|.|||.|..+=
T Consensus 252 MG~mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 252 MGYMLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred chhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 43332211 11223346699999999873
No 233
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.21 E-value=0.0012 Score=69.00 Aligned_cols=104 Identities=19% Similarity=0.153 Sum_probs=65.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH--------------------cCCC------------
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE--------------------RGLP------------ 300 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e--------------------rgl~------------ 300 (667)
++.++||||||+-.+-..-+.. ....|+..|.++..++..++ .|..
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~--~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACE--WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGG--TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHH--hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4579999999997664333333 25578999999877653321 1100
Q ss_pred --ceEEeecccCCC-CCC-----CCccEEEecccccccccCHH---HHHHHHHhcccCCeEEEEEeCCC
Q 005959 301 --AMIGSFASKQLP-YPS-----LSFDMLHCARCGVDWDQKDG---ILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 301 --~~~~~~da~~Lp-fpd-----~sFDlV~~s~~ll~~~~d~~---~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
..+...|+.+.+ +.. ..||+|++.+|+.....+.+ ++++.+.++|||||.|++.....
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 113445554433 332 25999999999766666664 69999999999999999987644
No 234
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.20 E-value=0.0014 Score=70.67 Aligned_cols=102 Identities=23% Similarity=0.194 Sum_probs=74.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC-CCceEEeecccCCCCCCCCccEEEecccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG-LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg-l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
.....+|+|.|.|..+..+... ++. +.++++..+.+-.++... ..+..+.+|+-+- .|. -|+|++-.+++||.
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~-fp~--ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSK-YPH--IKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TPK--GDAIWMKWILHDWT 250 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHh-CCC--CceeecCHHHHHhhhhhhcCCcceeccccccc-CCC--cCeEEEEeecccCC
Confidence 3578999999999999999984 443 677888877765544332 3344444443332 333 36999999999998
Q ss_pred cCH-HHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 332 QKD-GILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 332 ~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
++. .++|+++...|+|||.+++.+.+...
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 544 68999999999999999999985543
No 235
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.19 E-value=0.0002 Score=62.91 Aligned_cols=90 Identities=27% Similarity=0.310 Sum_probs=46.7
Q ss_pred EeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc--ccccc-ccccCCCCCC-CccccccccCccc
Q 005959 520 LDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVLH-DWCEAFPTYP-RTYDLVHAEGLLS 590 (667)
Q Consensus 520 lDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl--ig~~~-~~c~~f~typ-~tyDl~H~~~~~~ 590 (667)
||+|||.|.+..+|++. . -...++=.|-. +-+..+-+| +. .-... +--+.+...+ .+||+|.+..+++
T Consensus 1 LdiGcG~G~~~~~l~~~-~--~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEE-L--PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHH-C---EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHh-C--CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHh
Confidence 79999999999999973 1 23344444443 444222222 21 11111 1112233333 5999999999998
Q ss_pred cccCCCCCCCcchhheeccccccCCcEE
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWV 618 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~ 618 (667)
+.. .+..+|-.+-++|+|||.+
T Consensus 78 ~l~------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLE------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-------HHHHHHHHTTT-TSS-EE
T ss_pred hhh------hHHHHHHHHHHHcCCCCCC
Confidence 773 4557889999999999986
No 236
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.19 E-value=0.0048 Score=65.25 Aligned_cols=137 Identities=22% Similarity=0.251 Sum_probs=89.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCc-eeEEEEecCCHHHHHHH----HHcCCCc--eEEeecccCC---CCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLT----LERGLPA--MIGSFASKQL---PYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~-~~sV~gvD~S~~ml~~A----~ergl~~--~~~~~da~~L---pfpd~sFDlV~ 322 (667)
.+-+||||.||.|.+.....+.... ..+|.-.|.|+..++.. +++|+.. .|.++|+.+- .--+-..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 4579999999999987777665322 46889999999988654 4667653 5776665432 11123568999
Q ss_pred ecccccccccCH---HHHHHHHHhcccCCeEEEEEeCCCChhhhhhhH---HHH--hhh-------hhhhhhhhccceEE
Q 005959 323 CARCGVDWDQKD---GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNK---ENQ--KRW-------NFVRDFVENLCWEL 387 (667)
Q Consensus 323 ~s~~ll~~~~d~---~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~---e~~--~~W-------~~ie~l~~~~~W~l 387 (667)
.+.. +...+|- ...|.-+.+.|.|||+++.+.-+-.++-++-.. .++ ..| .+|+.+.+.-+++.
T Consensus 215 VsGL-~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 215 VSGL-YELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred Eecc-hhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCch
Confidence 8876 6666553 357999999999999999987432221110011 111 234 56777777777765
Q ss_pred eec
Q 005959 388 VSQ 390 (667)
Q Consensus 388 l~~ 390 (667)
+.+
T Consensus 294 ~~q 296 (311)
T PF12147_consen 294 IDQ 296 (311)
T ss_pred hhh
Confidence 544
No 237
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.18 E-value=0.0017 Score=67.83 Aligned_cols=83 Identities=20% Similarity=0.191 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc--CCC----ceEE
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER--GLP----AMIG 304 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er--gl~----~~~~ 304 (667)
....++|.+.....+ +..|||||.|||++|..|++.+ ..|++++.++.|+....+| |.+ .++.
T Consensus 44 p~v~~~I~~ka~~k~--------tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~~kLqV~ 112 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKP--------TDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVL 112 (315)
T ss_pred HHHHHHHHhccCCCC--------CCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCccceeeEE
Confidence 444555555544444 4899999999999999999985 4589999999999888776 333 3456
Q ss_pred eecccCCCCCCCCccEEEeccc
Q 005959 305 SFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 305 ~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
.+|....++| .||.++++.-
T Consensus 113 ~gD~lK~d~P--~fd~cVsNlP 132 (315)
T KOG0820|consen 113 HGDFLKTDLP--RFDGCVSNLP 132 (315)
T ss_pred ecccccCCCc--ccceeeccCC
Confidence 6677666666 5999999743
No 238
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.16 E-value=0.0007 Score=67.61 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=59.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc-----ccccccccccCCCCCCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-----FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG-----lig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
.+|||+|||.|.++.++... .+. .-.++-.|.. ..+..+-++. +--+..|-.+ .+.-+.+||+|+++..+.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~-~~~-~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKS-APD-RGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA-LPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CeEEEeCCCCChhHHHHHHh-cCC-CceEEEEECCHHHHHHHHHHhccCCCceEEecchhc-CCCCCCcEEEEEEeeeeC
Confidence 58999999999999998863 221 0123333332 3333333332 1111122222 222236899999877664
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.. .....++-++-++|+|||++++.+
T Consensus 118 ~~------~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 118 NV------TDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred Cc------ccHHHHHHHHHHHcCCCcEEEEEE
Confidence 43 345678999999999999999854
No 239
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.13 E-value=0.00018 Score=72.04 Aligned_cols=136 Identities=18% Similarity=0.270 Sum_probs=78.1
Q ss_pred CCceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcc--cccc---cccccccCCCCCCCccccccccC
Q 005959 513 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR--GFVG---VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 513 ~~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~R--Glig---~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
...+++++++|||-|-|.+.|...-+.+.++-++|. -|..+-+| |+-. ...+-.+..|. .+|||||++.
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~----Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~--~~FDLIV~SE 114 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPR----ALARARERLAGLPHVEWIQADVPEFWPE--GRFDLIVLSE 114 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HH----HHHHHHHHTTT-SSEEEEES-TTT---S--S-EEEEEEES
T ss_pred ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHH----HHHHHHHhcCCCCCeEEEECcCCCCCCC--CCeeEEEEeh
Confidence 468999999999999999999875455666655443 23223222 2111 11122333343 8999999999
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEE---EcCH-------HHHHHHHHHHhhCCCeeEEeeeccCC-CccEEE
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVII---RDTA-------RLIESARALTTRLKWDARVIEIESNS-DERLLI 656 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~---~d~~-------~~~~~~~~~~~~~~W~~~~~~~~~~~-~~~~li 656 (667)
++--+. +.-.+..++-.|...|+|||.+|+ ||.. .--+.|.++...+-=++.-.+...++ .|.-|+
T Consensus 115 VlYYL~---~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T PF05401_consen 115 VLYYLD---DAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERVECRGGSPNEDCLL 191 (201)
T ss_dssp -GGGSS---SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEEEEE-SSTTSEEEE
T ss_pred HhHcCC---CHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEEEEcCCCCCCceEe
Confidence 988776 445566678888899999999998 4322 12355556555554454444333333 355444
Q ss_pred E
Q 005959 657 C 657 (667)
Q Consensus 657 ~ 657 (667)
+
T Consensus 192 ~ 192 (201)
T PF05401_consen 192 A 192 (201)
T ss_dssp E
T ss_pred e
Confidence 4
No 240
>PRK14968 putative methyltransferase; Provisional
Probab=97.11 E-value=0.00094 Score=65.04 Aligned_cols=122 Identities=18% Similarity=0.236 Sum_probs=76.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhH---------hcccccccccccccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI---------LDRGFVGVLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~---------~~RGlig~~~~~c~~f~typ~tyDl~H~~ 586 (667)
..|||+|||.|.++..|...+. +|+-.|-. ..+..+ -+||+.-+.+|+.+.++. .+||+|=++
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~-----~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~d~vi~n 97 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGK-----KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG--DKFDVILFN 97 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcc-----eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc--cCceEEEEC
Confidence 4799999999999999987433 34444433 333333 123355566778777654 589999655
Q ss_pred Ccccccc---------------CCCCCCCcchhheeccccccCCcEEEEEcC-HHHHHHHHHHHhhCCCeeEEee
Q 005959 587 GLLSLES---------------GHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLKWDARVIE 645 (667)
Q Consensus 587 ~~~~~~~---------------~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~W~~~~~~ 645 (667)
.-|.... +......+..++-++.|+|+|||++++--. ....+++.++....-|+.....
T Consensus 98 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 98 PPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeee
Confidence 4432210 000122245688999999999999876422 2335677788888888766543
No 241
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.11 E-value=0.004 Score=67.28 Aligned_cols=103 Identities=13% Similarity=-0.001 Sum_probs=69.1
Q ss_pred CCEEEEeCCCCchHHHHHhhcC---CceeEEEEecCCHHHHHHHHHcCC----C-ceE--EeecccC----CCC--CCCC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLERGL----P-AMI--GSFASKQ----LPY--PSLS 317 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g---~~~~sV~gvD~S~~ml~~A~ergl----~-~~~--~~~da~~----Lpf--pd~s 317 (667)
...++|+|||.|.=+..|++.- .....++++|+|.++++.+.++-. + +.+ .+++..+ ++- ....
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~ 156 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSR 156 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCC
Confidence 3589999999999877776541 123578999999999987765422 2 323 3444322 221 1235
Q ss_pred ccEEEecccccccccCH--HHHHHHHHh-cccCCeEEEEEeC
Q 005959 318 FDMLHCARCGVDWDQKD--GILLLEVDR-VLKPGGYFVWTSP 356 (667)
Q Consensus 318 FDlV~~s~~ll~~~~d~--~~~L~Ei~R-vLKPGG~Lvis~p 356 (667)
..+++.....+...+.. ..+|+++.+ .|+|||.|++..-
T Consensus 157 ~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 157 PTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred ccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 67777766545544333 368999999 9999999998753
No 242
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.06 E-value=0.00052 Score=70.40 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=59.3
Q ss_pred eEEEeccccchhhhhhhhhcC-CCeEEEEeecCCCC-CchhhHhcc----cc---c-ccccccccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILDR----GF---V-GVLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~-~~vwvmnv~p~~~~-~~l~~~~~R----Gl---i-g~~~~~c~~f~typ~tyDl~H~~ 586 (667)
.+|||+|||.|.++..|.+.- .+- .+|+-+|-. .-+..+-++ +. + =+..|.++ ++. ..+|+|.+.
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~--~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~-~~~--~~~d~v~~~ 129 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPN--VKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH-VEI--KNASMVILN 129 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCC--CCCCEEeee
Confidence 479999999999998887520 111 134444443 333333222 21 1 12223332 221 358999888
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
..+.... . -....+|-||-|+|+|||.+++.|.
T Consensus 130 ~~l~~~~---~-~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLP---P-EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCC---H-HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 7776543 1 1234789999999999999999864
No 243
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.06 E-value=0.0027 Score=66.12 Aligned_cols=102 Identities=18% Similarity=0.150 Sum_probs=71.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---------CCCceEEeecccCC-CCCCC-CccEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL-PYPSL-SFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---------gl~~~~~~~da~~L-pfpd~-sFDlV 321 (667)
.+++||=||-|.|..+..+++.. ...+++.+|+++.+++.|++- ..+..+...|+... .-..+ +||+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 46899999999999999998873 356799999999999998753 12445555554321 12233 89999
Q ss_pred EecccccccccC----HHHHHHHHHhcccCCeEEEEEeC
Q 005959 322 HCARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 322 ~~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+.-..- ..... -..+++.+.+.|+|||.+++...
T Consensus 155 i~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~ 192 (246)
T PF01564_consen 155 IVDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG 192 (246)
T ss_dssp EEESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence 986431 11111 14799999999999999998764
No 244
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.0024 Score=66.81 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=64.9
Q ss_pred hHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEeeccc
Q 005959 233 YSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSFASK 309 (667)
Q Consensus 233 y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~da~ 309 (667)
..+.+.+.....+ ..+|||||+|.|.+|..|++++ ..|+++++++.+++..+++. .+..+..+|+.
T Consensus 18 v~~kIv~~a~~~~--------~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaL 86 (259)
T COG0030 18 VIDKIVEAANISP--------GDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDAL 86 (259)
T ss_pred HHHHHHHhcCCCC--------CCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcccccceEEEeCchh
Confidence 3455555554433 3899999999999999999985 34899999999998887763 45677888998
Q ss_pred CCCCCCC-CccEEEeccc
Q 005959 310 QLPYPSL-SFDMLHCARC 326 (667)
Q Consensus 310 ~Lpfpd~-sFDlV~~s~~ 326 (667)
..++++- .++.|+++.-
T Consensus 87 k~d~~~l~~~~~vVaNlP 104 (259)
T COG0030 87 KFDFPSLAQPYKVVANLP 104 (259)
T ss_pred cCcchhhcCCCEEEEcCC
Confidence 8888754 6899999854
No 245
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0037 Score=66.39 Aligned_cols=102 Identities=18% Similarity=0.082 Sum_probs=73.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC---------CceEEeecccC-CCCCCCCccEEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL---------PAMIGSFASKQ-LPYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl---------~~~~~~~da~~-Lpfpd~sFDlV~ 322 (667)
.+++||-||-|.|..++.++++. ....++.+|+++..++.+++.-. .+.+...|... +.-...+||+|+
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 34799999999999999999985 36789999999999999987521 12233333222 222234899999
Q ss_pred ecccccccccC----HHHHHHHHHhcccCCeEEEEEeC
Q 005959 323 CARCGVDWDQK----DGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 323 ~s~~ll~~~~d----~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+-.. -...+. ...+++.+++.|+++|.++...-
T Consensus 155 ~D~t-dp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 155 VDST-DPVGPAEALFTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred EcCC-CCCCcccccCCHHHHHHHHHhcCCCcEEEEecC
Confidence 8743 221111 15799999999999999999843
No 246
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.01 E-value=0.00044 Score=71.56 Aligned_cols=96 Identities=20% Similarity=0.196 Sum_probs=68.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc-cc-----cccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VG-----VLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl-ig-----~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
-+|||++||+|=+|..+.+. .+ .-.|+-.|-. +-|-++-+|-- .| ..+.==|.+|.-.+|||++=++..+
T Consensus 53 ~~vLDva~GTGd~a~~~~k~-~g--~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKS-VG--TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CEEEEecCCccHHHHHHHHh-cC--CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 47999999999999999873 22 4455666655 66666666643 12 1122224455334999999998777
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
-+.. +++..|=||-|||+|||-+++=
T Consensus 130 rnv~------d~~~aL~E~~RVlKpgG~~~vl 155 (238)
T COG2226 130 RNVT------DIDKALKEMYRVLKPGGRLLVL 155 (238)
T ss_pred hcCC------CHHHHHHHHHHhhcCCeEEEEE
Confidence 6553 5678999999999999988764
No 247
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=96.98 E-value=0.00038 Score=71.81 Aligned_cols=96 Identities=21% Similarity=0.233 Sum_probs=58.5
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc--cccccccccCCCCCCCccccccccCccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl--ig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
.|||++||+|-++-.|.+.-.+ .-.|+-.|-. +-|.++-+| |. |=....=.|.+|.-..|||.|=++..+.
T Consensus 50 ~vLDv~~GtG~~~~~l~~~~~~--~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglr 127 (233)
T PF01209_consen 50 RVLDVACGTGDVTRELARRVGP--NGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLR 127 (233)
T ss_dssp EEEEET-TTSHHHHHHGGGSS-----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GG
T ss_pred EEEEeCCChHHHHHHHHHHCCC--ccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHH
Confidence 8999999999999888752111 1245555555 666666554 32 1111111344553238999999877766
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.. ++....|-||=|+|||||.++|=
T Consensus 128 n~------~d~~~~l~E~~RVLkPGG~l~il 152 (233)
T PF01209_consen 128 NF------PDRERALREMYRVLKPGGRLVIL 152 (233)
T ss_dssp G-------SSHHHHHHHHHHHEEEEEEEEEE
T ss_pred hh------CCHHHHHHHHHHHcCCCeEEEEe
Confidence 44 34567899999999999999974
No 248
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=96.96 E-value=0.012 Score=65.01 Aligned_cols=111 Identities=13% Similarity=0.107 Sum_probs=62.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cc-----ccccccccccCCCCCC-Cccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RG-----FVGVLHDWCEAFPTYP-RTYDLVHA 585 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RG-----lig~~~~~c~~f~typ-~tyDl~H~ 585 (667)
..|||+|||+|-.+.+|.+. .|-. .|+-+|.. .-+..+-+ -+ -+-+++ ...++..+ .+||+|-|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~-~P~~--~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~--~D~l~~~~~~~fDlIls 304 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDK-NPQA--KVVFVDESPMAVASSRLNVETNMPEALDRCEFMI--NNALSGVEPFRFNAVLC 304 (378)
T ss_pred CeEEEEeccccHHHHHHHHh-CCCC--EEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE--ccccccCCCCCEEEEEE
Confidence 47999999999999998863 2221 23334433 22222211 01 122222 22233333 58999999
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEcC--HHHHHHHHHH
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT--ARLIESARAL 633 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~--~~~~~~~~~~ 633 (667)
+-.|..-+.. ..-....++-+.-|+|+|||.+++--+ .+...+++++
T Consensus 305 NPPfh~~~~~-~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~ 353 (378)
T PRK15001 305 NPPFHQQHAL-TDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKI 353 (378)
T ss_pred CcCcccCccC-CHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHH
Confidence 8777543200 001123577889999999999998532 2334455543
No 249
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.91 E-value=0.003 Score=67.33 Aligned_cols=118 Identities=19% Similarity=0.228 Sum_probs=72.0
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhc------CCceeEEEEecCCHHHHHHHHHc----CCC
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSK------ELLTMCIANYEASGSQVQLTLER----GLP 300 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~------g~~~~sV~gvD~S~~ml~~A~er----gl~ 300 (667)
....+.+.+++... ...+|||-.||+|.|...+.+. ......+.|+|.++.++..|+.+ +..
T Consensus 32 ~~i~~l~~~~~~~~--------~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 32 REIVDLMVKLLNPK--------KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp HHHHHHHHHHHTT---------TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHhhhhcc--------ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 34444555555433 3368999999999998887763 12356799999999998877632 322
Q ss_pred c---eEEeecccCCCCC--CCCccEEEecccccc--cc-----c------------CH-HHHHHHHHhcccCCeEEEEEe
Q 005959 301 A---MIGSFASKQLPYP--SLSFDMLHCARCGVD--WD-----Q------------KD-GILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 301 ~---~~~~~da~~Lpfp--d~sFDlV~~s~~ll~--~~-----~------------d~-~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
. .+...+.-..+.. .+.||+|+++.-.-. |. . .. -.++..+.+.|++||++++..
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 2 2444554333322 478999999732111 10 0 01 247888999999999998887
Q ss_pred C
Q 005959 356 P 356 (667)
Q Consensus 356 p 356 (667)
|
T Consensus 184 p 184 (311)
T PF02384_consen 184 P 184 (311)
T ss_dssp E
T ss_pred c
Confidence 7
No 250
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.89 E-value=0.0047 Score=67.82 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=63.1
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCC-C-CC-------------
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQL-P-YP------------- 314 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~L-p-fp------------- 314 (667)
.+|||++||+|.++..+++.. ..|+++|.++.+++.|+++ ++ ++.+..+|+... + +.
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 284 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL 284 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc
Confidence 479999999999999888762 4799999999999888754 44 456666666442 1 10
Q ss_pred -CCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 315 -SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 315 -d~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
...||+|+.---.- .-.+.++..+.+ |++.++++..
T Consensus 285 ~~~~~D~v~lDPPR~---G~~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 285 KSYNFSTIFVDPPRA---GLDDETLKLVQA---YERILYISCN 321 (362)
T ss_pred cCCCCCEEEECCCCC---CCcHHHHHHHHc---cCCEEEEEeC
Confidence 22589998764311 112345555544 7888888765
No 251
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.87 E-value=0.0047 Score=67.62 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=62.2
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCC--------C---C----
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLP--------Y---P---- 314 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lp--------f---p---- 314 (667)
.+|||++||+|.++..|++.. ..|+++|.++.+++.|+++ ++ ++.+..+++..+- + .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 369999999999999888763 3799999999999888764 33 3556666655421 1 0
Q ss_pred -CCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 315 -SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 315 -d~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
...||+|+.---.- .-...++..+. +|+++++++..
T Consensus 276 ~~~~~d~v~lDPPR~---G~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 276 KSYNCSTIFVDPPRA---GLDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred ccCCCCEEEECCCCC---CCcHHHHHHHH---cCCcEEEEEcC
Confidence 11379888753211 11134555544 47888888865
No 252
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=96.85 E-value=0.0021 Score=68.02 Aligned_cols=138 Identities=14% Similarity=0.154 Sum_probs=83.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc----cccccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF----VGVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl----ig~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
..|||+|||.|.++-+|... .+- .+|+-+|-. ..+.++-+ .|+ -=+..||.++++. ..||+|-++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~-~~~--~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~--~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYE-FPN--AEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAG--QKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcC--CCccEEEECC
Confidence 36999999999999999863 221 234455544 44444433 233 1233678777643 4799987752
Q ss_pred ccccccC----------CCCCC---------CcchhheeccccccCCcEEEEEcCHHHHHHHHHHHh-hCCCeeEEeeec
Q 005959 588 LLSLESG----------HRHRC---------STLDIFTEIDRILRPEGWVIIRDTARLIESARALTT-RLKWDARVIEIE 647 (667)
Q Consensus 588 ~~~~~~~----------~~~~c---------~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~-~~~W~~~~~~~~ 647 (667)
=+..... ....+ .+..++-+.-++|+|||++++.-....-+.++++.. ...|.......+
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D 270 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRD 270 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecC
Confidence 2111000 00000 123577788899999999999766666667777666 456754333334
Q ss_pred cCCCccEEEEEc
Q 005959 648 SNSDERLLICQK 659 (667)
Q Consensus 648 ~~~~~~~li~~K 659 (667)
-.+.++++++++
T Consensus 271 ~~g~~R~~~~~~ 282 (284)
T TIGR00536 271 LNGKERVVLGFY 282 (284)
T ss_pred CCCCceEEEEEe
Confidence 556788888764
No 253
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.85 E-value=0.003 Score=63.81 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=61.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCC--ceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~--~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
..+|||+-||.|.|+..+++.+ ....|.++|.++..++..++ .++. +....+|+..+.. .+.||-|+++.-
T Consensus 102 ~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp- 178 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP- 178 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T-
T ss_pred ceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh-
Confidence 4799999999999999999842 24569999999998876653 3443 3456778777655 789999998743
Q ss_pred cccccCHHHHHHHHHhcccCCeEEE
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lv 352 (667)
.....+|..+.+++++||.+-
T Consensus 179 ----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEE
T ss_pred ----HHHHHHHHHHHHHhcCCcEEE
Confidence 223358889999999999874
No 254
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.82 E-value=0.003 Score=63.98 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=54.2
Q ss_pred eEEEeccccchhhhhhhhhcC---CCeEEEEeecCCCCCchhhHhccccccccccccc---------CCCCCCCcccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCE---------AFPTYPRTYDLVH 584 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~---~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~---------~f~typ~tyDl~H 584 (667)
.+|||+|||.|+|...|.+.. ..|..+-+.|... + .|+.-+-.|... ++. +.+||+|-
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~---~-----~~v~~i~~D~~~~~~~~~i~~~~~--~~~~D~V~ 122 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDP---I-----VGVDFLQGDFRDELVLKALLERVG--DSKVQVVM 122 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccC---C-----CCcEEEecCCCChHHHHHHHHHhC--CCCCCEEe
Confidence 379999999999988887631 1244444433111 1 122222233332 233 26899999
Q ss_pred ccCccccccCCCCCC--------CcchhheeccccccCCcEEEEE
Q 005959 585 AEGLLSLESGHRHRC--------STLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 585 ~~~~~~~~~~~~~~c--------~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
++....... ... ....+|-|+=|+|+|||.|++.
T Consensus 123 S~~~~~~~g---~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 123 SDMAPNMSG---TPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred cCCCCccCC---ChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 865322111 111 1246889999999999999995
No 255
>PRK05785 hypothetical protein; Provisional
Probab=96.81 E-value=0.00083 Score=68.85 Aligned_cols=88 Identities=23% Similarity=0.202 Sum_probs=60.4
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccccccccccCCCCCCCccccccccCccccccCC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~ 595 (667)
.+|||+|||+|-++..|.+.. . -+|+-+|-. +-|..+-+++ ...+.-.+.+|.=+.+||+|.++..+.+.
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~-~---~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~~l~~~--- 123 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVF-K---YYVVALDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSFALHAS--- 123 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhc-C---CEEEEECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecChhhcc---
Confidence 479999999999999987621 1 256666765 5566655553 11223334444334899999998776433
Q ss_pred CCCCCcchhheeccccccCCc
Q 005959 596 RHRCSTLDIFTEIDRILRPEG 616 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP~G 616 (667)
-+.+..|-||.|+|||.+
T Consensus 124 ---~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 124 ---DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ---CCHHHHHHHHHHHhcCce
Confidence 346789999999999954
No 256
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.0006 Score=66.14 Aligned_cols=136 Identities=16% Similarity=0.278 Sum_probs=86.6
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-CCC--ceEEee-------cccCCCCCCCCccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-GLP--AMIGSF-------ASKQLPYPSLSFDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er-gl~--~~~~~~-------da~~Lpfpd~sFDlV~~ 323 (667)
+++|||+|.|.-.++..|.....+..+|...|-++..++..++- ..+ ..+... ...+......+||.|+|
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 37899999997666666665556778899999998888655431 111 101000 01112234468999999
Q ss_pred cccccccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeecc-CceEEEeecc
Q 005959 324 ARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQQ-DETVVWKKTS 401 (667)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~~-~~~~IwqK~~ 401 (667)
+.| +-+.+..+.++..|++.|+|.|..++..|-... . -+....+.+..++....+. .+..|||+..
T Consensus 110 ADC-lFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~-------s----L~kF~de~~~~gf~v~l~enyde~iwqrh~ 176 (201)
T KOG3201|consen 110 ADC-LFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ-------S----LQKFLDEVGTVGFTVCLEENYDEAIWQRHG 176 (201)
T ss_pred ccc-hhHHHHHHHHHHHHHHHhCcccceeEecCcccc-------h----HHHHHHHHHhceeEEEecccHhHHHHHHHH
Confidence 999 444555678999999999999998888774322 1 1223344555566665553 3456777643
No 257
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=96.80 E-value=0.0025 Score=69.35 Aligned_cols=119 Identities=13% Similarity=0.071 Sum_probs=73.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc---cccccccccCCCCCCCccccccccCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl---ig~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
..|||+|||.|.++..+.+. .+- -+|+-+|.. +.+..+-++.- +-+++.=.+.++.-+.+||+|-+...+..+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~-~~~--~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKH-VDA--KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CEEEEEecCCcHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 47999999999998887652 111 134444543 44554444320 111221122233324799999988777665
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEEcCH-----------------HHHHHHHHHHhhCCCeeEEe
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-----------------RLIESARALTTRLKWDARVI 644 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-----------------~~~~~~~~~~~~~~W~~~~~ 644 (667)
. +...+|-|+-|+|+|||.+++.+.. ...+++.+++++.-++....
T Consensus 192 ~------d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 192 P------DPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred C------CHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 4 2246899999999999999875321 12366777778878875544
No 258
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.78 E-value=0.00083 Score=70.19 Aligned_cols=97 Identities=23% Similarity=0.284 Sum_probs=55.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccc--c-ccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG--V-LHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig--~-~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||+|||.|..+..+...-.+- ..|+-+|-. ..+..+-++ |+-. . ..|. +.++.-+.+||+|++..+
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~--~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~~~~~~fD~Vi~~~v 155 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPT--GKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALPVADNSVDVIISNCV 155 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCCCCCCceeEEEEcCc
Confidence 499999999987554333210110 123333332 444444332 3210 0 1222 223322379999998877
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+.+.. +...++-|+-|+|||||.+++.|
T Consensus 156 ~~~~~------d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 INLSP------DKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ccCCC------CHHHHHHHHHHHcCCCcEEEEEE
Confidence 65432 23568999999999999999964
No 259
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.78 E-value=0.0017 Score=64.94 Aligned_cols=148 Identities=16% Similarity=0.201 Sum_probs=83.5
Q ss_pred ccCcccccc--chhhhHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEeccccchhhhhhhhhc-CCCeEEEE
Q 005959 468 GVHPEEFAE--DTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFGGFNSALLEK-GKSVWVMN 544 (667)
Q Consensus 468 ~~~~~~f~~--d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~~R~vlDm~~~~g~faa~l~~~-~~~vwvmn 544 (667)
|.....|.. +...++..++.- .+..+ .+..+ -.|||||||.|.|+..+... +.. -.
T Consensus 9 ~~~d~~~~~~~~~~~t~~~~r~~--~l~~l--------------~~~~~--~~vlDlG~GtG~~s~~~a~~~~~~---~~ 67 (198)
T PRK00377 9 GIPDEEFERDEEIPMTKEEIRAL--ALSKL--------------RLRKG--DMILDIGCGTGSVTVEASLLVGET---GK 67 (198)
T ss_pred CCChHHHccCCCCCCCHHHHHHH--HHHHc--------------CCCCc--CEEEEeCCcCCHHHHHHHHHhCCC---CE
Confidence 455556665 456888877532 12211 11112 37999999999998776431 011 12
Q ss_pred eecCCCC-CchhhHhc----ccccc----cccccccCCCCCCCccccccccCccccccCCCCCCCcchhheeccccccCC
Q 005959 545 VVPTIGT-NHLPMILD----RGFVG----VLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPE 615 (667)
Q Consensus 545 v~p~~~~-~~l~~~~~----RGlig----~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~ 615 (667)
|+-+|-. ..+..+-+ -|+.. +..|..+..+.++..||.|...+ ....+..++-++-|+|+||
T Consensus 68 v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~---------~~~~~~~~l~~~~~~Lkpg 138 (198)
T PRK00377 68 VYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG---------GSEKLKEIISASWEIIKKG 138 (198)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC---------CcccHHHHHHHHHHHcCCC
Confidence 3333332 23332221 13211 11233333333445788887632 1134457888999999999
Q ss_pred cEEEEE-cCHHHHHHHHHHHhhCCCeeEEee
Q 005959 616 GWVIIR-DTARLIESARALTTRLKWDARVIE 645 (667)
Q Consensus 616 G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~~ 645 (667)
|.+++. -+.+.+.++...++.+.++..+.+
T Consensus 139 G~lv~~~~~~~~~~~~~~~l~~~g~~~~~~~ 169 (198)
T PRK00377 139 GRIVIDAILLETVNNALSALENIGFNLEITE 169 (198)
T ss_pred cEEEEEeecHHHHHHHHHHHHHcCCCeEEEE
Confidence 999983 345667788887877777665553
No 260
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=96.78 E-value=0.00067 Score=68.34 Aligned_cols=95 Identities=14% Similarity=0.186 Sum_probs=58.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc--cccc-cccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVL-HDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl--ig~~-~~~c~~f~typ~tyDl~H~~~~ 588 (667)
-+|||+|||.|.++..|.+.... ++-+|.. ..+..+-++ |+ +-.. .|..+-....+.+||+|.+.++
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~~-----v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGAN-----VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCCe-----EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence 47999999999999988763222 2223322 222222221 22 1111 1111111122578999999887
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+.... +...+|-++.++|+|||++++.+
T Consensus 122 l~~~~------~~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 122 LEHVP------DPQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HHhCC------CHHHHHHHHHHhcCCCcEEEEEe
Confidence 76543 44578899999999999999875
No 261
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.76 E-value=0.0006 Score=70.60 Aligned_cols=100 Identities=9% Similarity=0.094 Sum_probs=58.5
Q ss_pred eEEEeccccchhhhhhhhhc-CCCeEEEEeecCCCC-CchhhHhcc----cccccccccccCCCCCC-CccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEK-GKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYP-RTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~-~~~vwvmnv~p~~~~-~~l~~~~~R----Glig~~~~~c~~f~typ-~tyDl~H~~~~~ 589 (667)
..|||+|||.|.++.+|... ..+-+ .|+-+|.. .-+..+-+| |+-.-..-.|..+...| ..||+|-++.++
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHH
Confidence 46999999999998887641 01211 34444443 333333322 22111111122222222 358998887666
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
.... ......++-||-|+|+|||.+++.|
T Consensus 136 ~~l~----~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 136 QFLE----PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HhCC----HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 6543 1234579999999999999999986
No 262
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=96.69 E-value=0.0031 Score=63.57 Aligned_cols=97 Identities=23% Similarity=0.229 Sum_probs=57.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc---cccc-cccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF---VGVL-HDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl---ig~~-~~~c~~f~typ~tyDl~H~~~ 587 (667)
..|||+|||.|.++..+.... +- .-.|+-+|-. +.+..+-++ ++ +-++ .|..+ ++.=+.+||+|.++.
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~-~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAV-GK-TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEA-LPFPDNSFDAVTIAF 129 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHc-CC-CCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccccc-CCCCCCCccEEEEec
Confidence 469999999999998887631 10 0123333322 222222221 11 1111 22221 222136899999877
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
++... .....+|-++-++|+|||.+++.+
T Consensus 130 ~l~~~------~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 130 GLRNV------PDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccccC------CCHHHHHHHHHHhccCCcEEEEEE
Confidence 66433 456678899999999999998753
No 263
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=96.69 E-value=0.0021 Score=67.45 Aligned_cols=135 Identities=13% Similarity=0.158 Sum_probs=80.7
Q ss_pred CccccccchhhhHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEeccccch----hhhhhhhhcCC--CeEEE
Q 005959 470 HPEEFAEDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFG----GFNSALLEKGK--SVWVM 543 (667)
Q Consensus 470 ~~~~f~~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~~R~vlDm~~~~g----~faa~l~~~~~--~vwvm 543 (667)
+...|--|..+|..-.+.....+.... ..+.--.|+|+|||+| +.|-.|.+... .-|..
T Consensus 69 ~~T~FfR~~~~~~~l~~~vlp~l~~~~---------------~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~ 133 (264)
T smart00138 69 NETRFFRESKHFEALEEKVLPLLIASR---------------RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDV 133 (264)
T ss_pred CCCcccCCcHHHHHHHHHHhHHHHHhc---------------CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCe
Confidence 445688888888876655443221110 0112357999999999 46666655211 12344
Q ss_pred EeecCCCC-CchhhHhccccc-----------------------------------ccccccccCCCCCCCccccccccC
Q 005959 544 NVVPTIGT-NHLPMILDRGFV-----------------------------------GVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 544 nv~p~~~~-~~l~~~~~RGli-----------------------------------g~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.|+-+|-. .-|..+- +|+- =..||-.+.-+ -+..||+|.|..
T Consensus 134 ~I~g~Dis~~~L~~Ar-~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~crn 211 (264)
T smart00138 134 KILATDIDLKALEKAR-AGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP-PLGDFDLIFCRN 211 (264)
T ss_pred EEEEEECCHHHHHHHH-cCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC-ccCCCCEEEech
Confidence 56666654 3343332 2210 01344444322 147899999998
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEcCHH
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR 625 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~ 625 (667)
+|.... .-....++-++-|+|+|||++++-....
T Consensus 212 vl~yf~----~~~~~~~l~~l~~~L~pGG~L~lg~~E~ 245 (264)
T smart00138 212 VLIYFD----EPTQRKLLNRFAEALKPGGYLFLGHSES 245 (264)
T ss_pred hHHhCC----HHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence 887653 1223469999999999999999976553
No 264
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=96.65 E-value=0.0011 Score=67.56 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=61.0
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccc--cccccccCCCCCCCccccccccCccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVG--VLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig--~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
.|||+|||.|.++..|.+.. .+++-+|.. +.+..+-++ |+-. ...++.+-....+.+||+|.++.++.
T Consensus 51 ~vLdiG~G~G~~~~~l~~~~-----~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 51 RVLDVGCGGGILSESMARLG-----ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred eEEEeCCCCCHHHHHHHHcC-----CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 58999999999999998632 244444443 344433332 3211 12223222112236899999988877
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
... +...+|-++.|+|+|||.+++..
T Consensus 126 ~~~------~~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 126 HVP------DPASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred ccC------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 654 34578899999999999999874
No 265
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=96.64 E-value=0.0057 Score=60.92 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=65.4
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeeccc-CCC---CCCCCccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASK-QLP---YPSLSFDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~-~Lp---fpd~sFDlV~~ 323 (667)
+.++||+=||+|.++...+.+|. ..++.+|.+...++..++. +.. ..+...|+. .++ .....||+|++
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 48999999999999999999985 4689999999988766543 332 344444532 222 24679999998
Q ss_pred cccccccccCHHHHHHHHH--hcccCCeEEEEEeC
Q 005959 324 ARCGVDWDQKDGILLLEVD--RVLKPGGYFVWTSP 356 (667)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~--RvLKPGG~Lvis~p 356 (667)
--- +........++..+. .+|+++|.+++...
T Consensus 121 DPP-Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 121 DPP-YAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp --S-TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCC-cccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 754 222111256777776 89999999999765
No 266
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=96.62 E-value=0.0022 Score=70.83 Aligned_cols=119 Identities=17% Similarity=0.112 Sum_probs=72.3
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-----CchhhHhccccc---cccccc---ccCCCCCCCccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-----NHLPMILDRGFV---GVLHDW---CEAFPTYPRTYDLVHA 585 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-----~~l~~~~~RGli---g~~~~~---c~~f~typ~tyDl~H~ 585 (667)
..+||+|||.|.|..+|....... |++=.+-. ....-+.++|+- -+..|- .+.|+. .++|.|++
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~---~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~--~s~D~I~l 198 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNK---LFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPS--NSVEKIFV 198 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCC---CEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCC--CceeEEEE
Confidence 479999999999999998642111 33333332 122334455641 122333 234553 89999997
Q ss_pred cCccccccCCCCC-CCcchhheeccccccCCcEEEEE-cCHHHHHHHHHHHhhC-CCee
Q 005959 586 EGLLSLESGHRHR-CSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRL-KWDA 641 (667)
Q Consensus 586 ~~~~~~~~~~~~~-c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~-~W~~ 641 (667)
..- ..|...++| =-...+|-|+-|+|+|||.+.++ |..+..+.+.+..... +++.
T Consensus 199 nFP-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 199 HFP-VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred eCC-CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 522 445433332 11257899999999999999986 6666666665554443 5554
No 267
>PRK06922 hypothetical protein; Provisional
Probab=96.62 E-value=0.00076 Score=78.37 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=62.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc-cccccccccCCCC-C-CCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF-VGVLHDWCEAFPT-Y-PRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl-ig~~~~~c~~f~t-y-p~tyDl~H~~~~ 588 (667)
.+|||+|||.|.++.+|... .+ ..+|+-.|-. +.+..+-++ |. +-+++.=+..++. + |.+||+|.++.+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~-~P--~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEE-TE--DKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHh-CC--CCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 47999999999998888652 22 1244444544 334433332 21 1111111223342 2 489999998877
Q ss_pred ccccc----CCCC---CCCcchhheeccccccCCcEEEEEcC
Q 005959 589 LSLES----GHRH---RCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 589 ~~~~~----~~~~---~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
+..+- ..+. .-.+..+|-|+-|+|+|||.+++.|.
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 65431 0001 12455789999999999999999874
No 268
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=96.62 E-value=0.00076 Score=67.67 Aligned_cols=122 Identities=15% Similarity=0.273 Sum_probs=72.9
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcccccccccccccCCC--CCCCccccccccCccccccCC
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFP--TYPRTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~f~--typ~tyDl~H~~~~~~~~~~~ 595 (667)
.|||+|||-|--|-+|.+.+.+|-..-..+..-.....++-++||- ++.++--+. .+|..||+|.+..+|-...
T Consensus 33 ~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~-- 108 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMFLQ-- 108 (192)
T ss_dssp EEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS---
T ss_pred cEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEeccCC--
Confidence 7999999999999999986654443333222211223355567773 333333222 2468999999887776654
Q ss_pred CCCCCcchhheeccccccCCcEEEEE---c--------CHHHHHHHHHHHhhCC-CeeEEee
Q 005959 596 RHRCSTLDIFTEIDRILRPEGWVIIR---D--------TARLIESARALTTRLK-WDARVIE 645 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP~G~~i~~---d--------~~~~~~~~~~~~~~~~-W~~~~~~ 645 (667)
+-.++.|+-.|-.-++||||+++- + +.+..-+-.+|..-.. |++...+
T Consensus 109 --~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~dW~il~y~ 168 (192)
T PF03848_consen 109 --RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYADWEILKYN 168 (192)
T ss_dssp --GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTTTSEEEEEE
T ss_pred --HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhCCCeEEEEE
Confidence 456778889999999999999883 1 1233333334444443 9987654
No 269
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.61 E-value=0.0062 Score=67.85 Aligned_cols=139 Identities=9% Similarity=0.078 Sum_probs=84.9
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc--cccccccccC-CCCCCCccccccccCcc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEA-FPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl--ig~~~~~c~~-f~typ~tyDl~H~~~~~ 589 (667)
+|||+|||+|.++.+|... .+- .+|+-+|-. ..+..+-+ .|+ .=+-.|+.+. ++. ..+||+|-|+--+
T Consensus 254 rVLDLGcGSG~IaiaLA~~-~p~--a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~-~~~FDLIVSNPPY 329 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALE-RPD--AFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPS-EGKWDIIVSNPPY 329 (423)
T ss_pred EEEEEeChhhHHHHHHHHh-CCC--CEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcccccc-CCCccEEEECCCC
Confidence 7999999999999888742 221 234444543 44443332 232 1233466543 221 2479999986644
Q ss_pred ccccCC----------------CCCCC---cchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEeeeccCC
Q 005959 590 SLESGH----------------RHRCS---TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNS 650 (667)
Q Consensus 590 ~~~~~~----------------~~~c~---~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~~~~~ 650 (667)
...... +..-. +..++-+.-+.|+|||++++.-..+.-++++++++...|+......+-.+
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G 409 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAG 409 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCC
Confidence 221100 00011 12455566788999999998656667778888888888876555556666
Q ss_pred CccEEEEEcc
Q 005959 651 DERLLICQKP 660 (667)
Q Consensus 651 ~~~~li~~K~ 660 (667)
.+++++.++.
T Consensus 410 ~dR~v~~~~~ 419 (423)
T PRK14966 410 LDRVTLGKYM 419 (423)
T ss_pred CcEEEEEEEh
Confidence 7999988753
No 270
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.0041 Score=59.53 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=56.9
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC----CCceEEeecccCCCCCCCCccEEEeccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG----LPAMIGSFASKQLPYPSLSFDMLHCARC 326 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg----l~~~~~~~da~~Lpfpd~sFDlV~~s~~ 326 (667)
.+..++|+|||.|-+....+-. ..-.+.|+|+.++.++.+.++. +++.+.+++...+-+..+.||.++.+.-
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~--~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMP--KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcC--CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCC
Confidence 4588999999999988554433 3457899999999999886553 4566788888888888899999998743
No 271
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=96.59 E-value=0.0023 Score=63.81 Aligned_cols=122 Identities=14% Similarity=0.139 Sum_probs=68.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhH----hccccccc--c-cccccCC-CCCC-Ccccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGV--L-HDWCEAF-PTYP-RTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~----~~RGlig~--~-~~~c~~f-~typ-~tyDl~H~~ 586 (667)
+.|||+|||.|.|+.+|... .|- .||+-+|-. .-+..+ -..|+-.+ . .|.-+-. ..+| .++|.|+..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~-~p~--~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQ-NPD--KNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred ceEEEeCCCccHHHHHHHHh-CCC--CCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 57999999999999999863 221 133333332 222222 22333111 1 1111100 1134 489998865
Q ss_pred CccccccC---CCCCCCcchhheeccccccCCcEEEEE-cCHHHHHHHHHHHhh-CCCeeE
Q 005959 587 GLLSLESG---HRHRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTR-LKWDAR 642 (667)
Q Consensus 587 ~~~~~~~~---~~~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~-~~W~~~ 642 (667)
.. ..|.. ...|.....+|-|+-|+|+|||.+++. |.....+.+.+.... -+|+..
T Consensus 95 ~p-dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 95 FP-DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred CC-CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEec
Confidence 32 22321 113555678899999999999999986 666556665554433 335543
No 272
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.58 E-value=0.0055 Score=65.51 Aligned_cols=56 Identities=7% Similarity=0.115 Sum_probs=44.1
Q ss_pred HHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 005959 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (667)
Q Consensus 234 ~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er 297 (667)
.+++.+.+...+ ...+||.+||.|..+..+++..-....|+|+|.++.+++.|+++
T Consensus 8 l~Evl~~L~~~p--------g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~ 63 (296)
T PRK00050 8 LDEVVDALAIKP--------DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDR 63 (296)
T ss_pred HHHHHHhhCCCC--------CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHh
Confidence 345555554333 36999999999999999998843356799999999999999875
No 273
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.52 E-value=0.011 Score=64.16 Aligned_cols=93 Identities=13% Similarity=0.102 Sum_probs=63.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
.+.++|||||++|.+|..|+++|. .|+++|..+ |-... .....+.....+.....-+.+.+|+|+|-.+ .
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~-l~~~L-~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-----e 280 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP-MAQSL-MDTGQVEHLRADGFKFRPPRKNVDWLVCDMV-----E 280 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh-cCHhh-hCCCCEEEEeccCcccCCCCCCCCEEEEecc-----c
Confidence 568999999999999999999974 689999553 33222 2223455544444333222678999999854 4
Q ss_pred CHHHHHHHHHhcccCC--eEEEEEe
Q 005959 333 KDGILLLEVDRVLKPG--GYFVWTS 355 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPG--G~Lvis~ 355 (667)
.+.+.+.-+.+.|..| ..+|+.-
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfnL 305 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFNL 305 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEEE
Confidence 5667777788888776 4555554
No 274
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.51 E-value=0.0016 Score=61.88 Aligned_cols=98 Identities=18% Similarity=0.300 Sum_probs=62.6
Q ss_pred eEEEeccccchhhhhhhhh-cCCCeEEEEeecCCCC-CchhhHhc----cccc---ccccccccCCCC-CCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLE-KGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFPT-YPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~-~~~~vwvmnv~p~~~~-~~l~~~~~----RGli---g~~~~~c~~f~t-yp~tyDl~H~~ 586 (667)
-+|||+|||+|-+.=.|.+ .....= ++=+|-. ..+..+-. .|+- -...|.-+ ++. |+..||+|.+.
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~---i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAK---IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN 80 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSE---EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCE---EEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence 4799999999999999883 111222 3333433 44444433 3441 12233333 332 44889999999
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEcCH
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 624 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 624 (667)
.++... .....+|-+|=|.|+|+|.+++.+-.
T Consensus 81 ~~l~~~------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHF------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGT------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cchhhc------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 888433 34557888999999999999998765
No 275
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.51 E-value=0.0066 Score=61.61 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=63.5
Q ss_pred ccccc-hhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc------
Q 005959 225 LIFDG-VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER------ 297 (667)
Q Consensus 225 ~~yd~-~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er------ 297 (667)
..|.. .......+.+.+...+ ....+|||||.|......+-. .......|+++.+...+.|.+.
T Consensus 21 ~~YGEi~~~~~~~il~~~~l~~--------~dvF~DlGSG~G~~v~~aal~-~~~~~~~GIEi~~~~~~~a~~~~~~~~~ 91 (205)
T PF08123_consen 21 ETYGEISPEFVSKILDELNLTP--------DDVFYDLGSGVGNVVFQAALQ-TGCKKSVGIEILPELHDLAEELLEELKK 91 (205)
T ss_dssp CCGGGCHHHHHHHHHHHTT--T--------T-EEEEES-TTSHHHHHHHHH-H--SEEEEEE-SHHHHHHHHHHHHHHHH
T ss_pred cceeecCHHHHHHHHHHhCCCC--------CCEEEECCCCCCHHHHHHHHH-cCCcEEEEEEechHHHHHHHHHHHHHHH
Confidence 34533 2344444555555433 379999999999987766643 1234478999998876555321
Q ss_pred -----CC---CceEEeecccCCCCCC---CCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 298 -----GL---PAMIGSFASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 298 -----gl---~~~~~~~da~~Lpfpd---~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
|. ++.+..+|....++.. ..-|+|+++... +.++....|.++..-||+|-+++-..
T Consensus 92 ~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs~~ 158 (205)
T PF08123_consen 92 RMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIISTK 158 (205)
T ss_dssp HHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred HHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEECC
Confidence 22 2233444433322111 246999998653 34555677888889999988876443
No 276
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=96.50 E-value=0.0018 Score=69.12 Aligned_cols=101 Identities=15% Similarity=0.224 Sum_probs=62.7
Q ss_pred CceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhH----hcccccccccccccCC--CCCCCccccccccC
Q 005959 514 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMI----LDRGFVGVLHDWCEAF--PTYPRTYDLVHAEG 587 (667)
Q Consensus 514 ~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~----~~RGlig~~~~~c~~f--~typ~tyDl~H~~~ 587 (667)
...+.|||+|||.|.++.++.+. .|-. +++-.|-+..+..+ -+.|+-.-++-.+--| ..+| .+|++-.++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~-~p~~--~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKH-FPEL--DSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHH-CCCC--EEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEh
Confidence 34679999999999999999873 3322 23333433333333 3345532222222222 1234 379988777
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
++..|.. -....+|-++-|.|+|||.++|-|
T Consensus 224 ~lh~~~~----~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 224 ILYSANE----QLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred hhhcCCh----HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 7766651 122358889999999999999875
No 277
>PRK04266 fibrillarin; Provisional
Probab=96.48 E-value=0.007 Score=62.24 Aligned_cols=91 Identities=14% Similarity=0.199 Sum_probs=50.5
Q ss_pred EEEeccccchhhhhhhhhcC--CCeEEEEeecCCCCCchh----hHhcc-cccccccccccCC--CCCCCccccccccCc
Q 005959 518 NVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGTNHLP----MILDR-GFVGVLHDWCEAF--PTYPRTYDLVHAEGL 588 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~--~~vwvmnv~p~~~~~~l~----~~~~R-Glig~~~~~c~~f--~typ~tyDl~H~~~~ 588 (667)
.|||+|||.|++..+|.+.- ..|+.+-+-| .-+. .+-+| .+.-+..|-.++. ...+.+||.|-++..
T Consensus 75 ~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~----~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~ 150 (226)
T PRK04266 75 KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAP----RPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVA 150 (226)
T ss_pred EEEEEccCCCHHHHHHHHhcCCCeEEEEECCH----HHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCC
Confidence 69999999999999998621 1233332222 2122 22222 2334444544431 112456887643211
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
..+ ....+|-|+-|+|+|||+++|
T Consensus 151 -~p~-------~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 151 -QPN-------QAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred -Chh-------HHHHHHHHHHHhcCCCcEEEE
Confidence 000 112346799999999999999
No 278
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.46 E-value=0.024 Score=65.24 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=46.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCC-------ceeEEEEecCCHHHHHHHHHc----C-CCceEEeecccC--C---CCCCC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKEL-------LTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQ--L---PYPSL 316 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~-------~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~da~~--L---pfpd~ 316 (667)
..+|||.+||+|.+...++++.. ....+.++|+++..+..++.. + ....+...+... . .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 46899999999999988876521 136789999999999877654 1 122222222111 0 11124
Q ss_pred CccEEEecc
Q 005959 317 SFDMLHCAR 325 (667)
Q Consensus 317 sFDlV~~s~ 325 (667)
.||+|+++-
T Consensus 112 ~fD~IIgNP 120 (524)
T TIGR02987 112 LFDIVITNP 120 (524)
T ss_pred cccEEEeCC
Confidence 799999984
No 279
>PRK14967 putative methyltransferase; Provisional
Probab=96.42 E-value=0.0035 Score=63.80 Aligned_cols=122 Identities=18% Similarity=0.166 Sum_probs=68.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc--cccccccccCCCCCCCccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF--VGVLHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl--ig~~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
-.|||+|||.|.++..+... .. -+|+-+|-. ..+..+-+ .|+ .-+..|+.+.++. .+||+|.++--|
T Consensus 38 ~~vLDlGcG~G~~~~~la~~--~~--~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~--~~fD~Vi~npPy 111 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAA--GA--GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEF--RPFDVVVSNPPY 111 (223)
T ss_pred CeEEEecCCHHHHHHHHHHc--CC--CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccC--CCeeEEEECCCC
Confidence 37999999999999888752 21 123333332 33332222 233 1223466555442 689999997543
Q ss_pred ccccC--------------CC-CCCCcchhheeccccccCCcEEEEE-cCHHHHHHHHHHHhhCCCeeEEe
Q 005959 590 SLESG--------------HR-HRCSTLDIFTEIDRILRPEGWVIIR-DTARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 590 ~~~~~--------------~~-~~c~~~~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~~W~~~~~ 644 (667)
..-.. +. ..+.+..++-++-|+|+|||.+++- .+....+++..++++-.|++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 32110 00 0112345677899999999999983 22223445555555556654443
No 280
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.41 E-value=0.0031 Score=63.85 Aligned_cols=109 Identities=16% Similarity=0.169 Sum_probs=60.1
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcccccccccccccCCCCCCCccccccccCccccccCC
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~ 595 (667)
--.|=|||||-|-.|+++-. +..|.-.-++..+..-|. -|=. --|++. .+.|++=+ |+|+-.
T Consensus 73 ~~viaD~GCGdA~la~~~~~-~~~V~SfDLva~n~~Vta---cdia--------~vPL~~--~svDv~Vf--cLSLMG-- 134 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPN-KHKVHSFDLVAPNPRVTA---CDIA--------NVPLED--ESVDVAVF--CLSLMG-- 134 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S----EEEEESS-SSTTEEE---S-TT--------S-S--T--T-EEEEEE--ES---S--
T ss_pred CEEEEECCCchHHHHHhccc-CceEEEeeccCCCCCEEE---ecCc--------cCcCCC--CceeEEEE--EhhhhC--
Confidence 34899999999999998853 234555555554432111 1100 023343 78888644 566533
Q ss_pred CCCCCcchhheeccccccCCcEEEEEcCHHHH---HHHHHHHhhCCCeeEEee
Q 005959 596 RHRCSTLDIFTEIDRILRPEGWVIIRDTARLI---ESARALTTRLKWDARVIE 645 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~---~~~~~~~~~~~W~~~~~~ 645 (667)
=+..+.+.|-.|||||||.++|-+-.... +.-.+..+++-.++...|
T Consensus 135 ---Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 135 ---TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp ---S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred ---CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc
Confidence 35568999999999999999997655443 344456677888887765
No 281
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.40 E-value=0.0051 Score=64.14 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=78.2
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccccccccccccCCCC-CCCccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFVGVLHDWCEAFPT-YPRTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGlig~~~~~c~~f~t-yp~tyDl~H~~~~~~ 590 (667)
.+|+|+|||+|.++-+|... .+- .+|+-+|.. ..+..+-+ -|+--+-.|+.+.++. ....||+|=++--+.
T Consensus 88 ~~vLDlg~GsG~i~l~la~~-~~~--~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAA-LDG--IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYV 164 (251)
T ss_pred CEEEEecCchHHHHHHHHHh-CCC--CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCC
Confidence 36999999999999888752 221 133444443 33333222 2321133455544432 234699998765443
Q ss_pred cccC----------CCCCCC----------cchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEeeeccC
Q 005959 591 LESG----------HRHRCS----------TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESN 649 (667)
Q Consensus 591 ~~~~----------~~~~c~----------~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~~~~ 649 (667)
.... ...+.. +..++-...++|+|||.+++--..+...++..++....|+..+..+++-
T Consensus 165 ~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 165 PTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred CchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc
Confidence 2110 000111 2367777889999999999876566677888888888888887765543
No 282
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.40 E-value=0.016 Score=64.25 Aligned_cols=103 Identities=17% Similarity=0.089 Sum_probs=76.3
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC---CceEEeecccCC-C---CCCCCccEEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL---PAMIGSFASKQL-P---YPSLSFDMLH 322 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl---~~~~~~~da~~L-p---fpd~sFDlV~ 322 (667)
+++|||+=|=||.|+.+.+..|. .+|+.+|.|...++.|+++ |+ ...++++|+-.. . -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 48999999999999999998874 3689999999999998865 33 245676665332 1 2234899999
Q ss_pred ecccccc--------cccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 323 CARCGVD--------WDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 323 ~s~~ll~--------~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.---.+. ...+...++..+.++|+|||.++++....
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 8532221 12333468899999999999999987644
No 283
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.37 E-value=0.026 Score=59.12 Aligned_cols=103 Identities=13% Similarity=0.063 Sum_probs=73.1
Q ss_pred hhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC---CCceEEee
Q 005959 230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG---LPAMIGSF 306 (667)
Q Consensus 230 ~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg---l~~~~~~~ 306 (667)
.....+.+.+.+....+ ..|||||+|+|.+|..|++.+ ..++++|.++.+++..+++. .++.+...
T Consensus 15 ~~~~~~~Iv~~~~~~~~--------~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~ 83 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEG--------DTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFASNPNVEVING 83 (262)
T ss_dssp HHHHHHHHHHHHTCGTT--------SEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTTCSSEEEEES
T ss_pred CHHHHHHHHHhcCCCCC--------CEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhhcccceeeec
Confidence 35566777777765443 899999999999999999985 57899999999998888753 46677888
Q ss_pred cccCCCCCC---CCccEEEecccccccccCHHHHHHHHHhcccC
Q 005959 307 ASKQLPYPS---LSFDMLHCARCGVDWDQKDGILLLEVDRVLKP 347 (667)
Q Consensus 307 da~~Lpfpd---~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKP 347 (667)
|+..+..++ +.-..|+++.- ++. ...++..+...-+.
T Consensus 84 D~l~~~~~~~~~~~~~~vv~NlP-y~i---s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 84 DFLKWDLYDLLKNQPLLVVGNLP-YNI---SSPILRKLLELYRF 123 (262)
T ss_dssp -TTTSCGGGHCSSSEEEEEEEET-GTG---HHHHHHHHHHHGGG
T ss_pred chhccccHHhhcCCceEEEEEec-ccc---hHHHHHHHhhcccc
Confidence 888877654 45567777633 221 23566666653333
No 284
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.34 E-value=0.0017 Score=54.72 Aligned_cols=95 Identities=22% Similarity=0.237 Sum_probs=56.3
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh---cccc---cccc-cccccCCCCCCCccccccccCcc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL---DRGF---VGVL-HDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~---~RGl---ig~~-~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
+|+|+|||.|++...+.+ .+. .++.-.|-. +.+..+. +.+. +-++ .|+...-..-+.+||++.++..+
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~ 76 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPG--ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPL 76 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCC--CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccce
Confidence 489999999999999986 111 233333332 2222222 1111 1111 22222221134789999998887
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.... -....++-.+.+.|||||++++.
T Consensus 77 ~~~~-----~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 77 HHLV-----EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eehh-----hHHHHHHHHHHHHcCCCCEEEEE
Confidence 6521 13346788889999999999986
No 285
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.32 E-value=0.0013 Score=67.47 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=67.4
Q ss_pred CCCceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcc-cccccccccccCCCCCCCccccccccCccc
Q 005959 512 PYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDR-GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 512 ~~~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~R-Glig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
.+..+++|+|+|+|.|.|+++++.. .|=+ .++-.|-|..+..+.+. .+--+=||. |.++|. +|++...+++.
T Consensus 97 d~~~~~~vvDvGGG~G~~~~~l~~~-~P~l--~~~v~Dlp~v~~~~~~~~rv~~~~gd~---f~~~P~-~D~~~l~~vLh 169 (241)
T PF00891_consen 97 DFSGFKTVVDVGGGSGHFAIALARA-YPNL--RATVFDLPEVIEQAKEADRVEFVPGDF---FDPLPV-ADVYLLRHVLH 169 (241)
T ss_dssp TTTTSSEEEEET-TTSHHHHHHHHH-STTS--EEEEEE-HHHHCCHHHTTTEEEEES-T---TTCCSS-ESEEEEESSGG
T ss_pred cccCccEEEeccCcchHHHHHHHHH-CCCC--cceeeccHhhhhccccccccccccccH---Hhhhcc-ccceeeehhhh
Confidence 4677899999999999999999974 4533 23444545444444431 122233333 355556 99999999999
Q ss_pred cccCCCCCCCcchhheeccccccCC--cEEEEEc
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPE--GWVIIRD 622 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~--G~~i~~d 622 (667)
.|.. +.|. .||--+=+.|+|| |.++|-|
T Consensus 170 ~~~d--~~~~--~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 170 DWSD--EDCV--KILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp GS-H--HHHH--HHHHHHHHHSEECTTEEEEEEE
T ss_pred hcch--HHHH--HHHHHHHHHhCCCCCCeEEEEe
Confidence 9974 3343 5899999999999 9999854
No 286
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.30 E-value=0.0028 Score=63.86 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=52.1
Q ss_pred eEEEeccccchhhhhhhhhc---CCCeEEEEeecCCCCCchhh----Hhcccccc---cc-cccccCCCCCCCccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPM----ILDRGFVG---VL-HDWCEAFPTYPRTYDLVHA 585 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~~~l~~----~~~RGlig---~~-~~~c~~f~typ~tyDl~H~ 585 (667)
..|||+|||+|.+++.|.+. +..|..+-+.| +.+.. +...|+-. ++ .|-.+.++. ..+||.|.+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~----~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~-~~~fD~Ii~ 148 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVK----ELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK-HAPFDAIIV 148 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCcEEEEECCcccCCcc-CCCccEEEE
Confidence 36999999999999888652 11233333332 22221 22335422 22 244444443 368999998
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
...+... .=|+-|+|+|||.+++-
T Consensus 149 ~~~~~~~------------~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 149 TAAASTI------------PSALVRQLKDGGVLVIP 172 (205)
T ss_pred ccCcchh------------hHHHHHhcCcCcEEEEE
Confidence 6554322 23566999999999984
No 287
>PRK06202 hypothetical protein; Provisional
Probab=96.23 E-value=0.0028 Score=64.70 Aligned_cols=101 Identities=12% Similarity=0.133 Sum_probs=63.5
Q ss_pred eeEEEeccccchhhhhhhhhcC-CCeEEEEeecCCCC-CchhhHhcccc---cccccccccCCCCCCCccccccccCccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGT-NHLPMILDRGF---VGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~-~~vwvmnv~p~~~~-~~l~~~~~RGl---ig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
-.+|||+|||.|.++..|.+.- +.-...+|+-+|-. +.+..+.++.- +-+...=++.++.-+.+||+|-|+.+|.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~lh 140 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHFLH 140 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCeee
Confidence 4689999999999988876410 00112356777765 66666655421 1111111234444358999999999987
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+.. +. .+..+|-||-|++| |.+++.|
T Consensus 141 h~~---d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 141 HLD---DA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred cCC---hH-HHHHHHHHHHHhcC--eeEEEec
Confidence 765 21 24468999999999 5556554
No 288
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=96.22 E-value=0.0021 Score=66.08 Aligned_cols=113 Identities=15% Similarity=0.054 Sum_probs=77.0
Q ss_pred ceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccccccccccc--------ccCCCCCCCccccccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDW--------CEAFPTYPRTYDLVHA 585 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~--------c~~f~typ~tyDl~H~ 585 (667)
.-|.+.|+|||.| +||..+..- -=+|+-+|.. .+|+++- -+.--+||.- -+++..=+.+-|||-|
T Consensus 33 ~h~~a~DvG~G~G-qa~~~iae~----~k~VIatD~s~~mL~~a~-k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~ 106 (261)
T KOG3010|consen 33 GHRLAWDVGTGNG-QAARGIAEH----YKEVIATDVSEAMLKVAK-KHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITA 106 (261)
T ss_pred CcceEEEeccCCC-cchHHHHHh----hhhheeecCCHHHHHHhh-cCCCcccccCCccccccccccccCCCcceeeehh
Confidence 4679999999999 888777521 2367777876 7887543 3333333333 2444444799999999
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCc-EEE---EEcCHHHHHHHHHHHhhCCCe
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEG-WVI---IRDTARLIESARALTTRLKWD 640 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G-~~i---~~d~~~~~~~~~~~~~~~~W~ 640 (667)
..|+. =|+++..+-++-|||||.| .+. .+|+.-.+-++-++..+++|+
T Consensus 107 Aqa~H-------WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~ 158 (261)
T KOG3010|consen 107 AQAVH-------WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDS 158 (261)
T ss_pred hhhHH-------hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhc
Confidence 98874 3677889999999999999 222 355554555666666666664
No 289
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=96.21 E-value=0.0043 Score=55.88 Aligned_cols=91 Identities=21% Similarity=0.148 Sum_probs=53.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhH----hccccc--cc-ccc--cccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFV--GV-LHD--WCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~----~~RGli--g~-~~~--~c~~f~typ~tyDl~H~~ 586 (667)
.+|||+|||.|.++..+.+. .+- .+|+-.|-. ..+..+ -..|+- -+ ..| |+.+ .-+.+||.|=+.
T Consensus 21 ~~vldlG~G~G~~~~~l~~~-~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~v~~~ 95 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARL-VPN--GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE--DSLPEPDRVFIG 95 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHH-CCC--ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh--hhcCCCCEEEEC
Confidence 48999999999999999863 221 234444433 333222 112321 11 112 2222 223579988664
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
..... +..++-++-|.|+|||++++.
T Consensus 96 ~~~~~---------~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 96 GSGGL---------LQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred Ccchh---------HHHHHHHHHHHcCCCCEEEEE
Confidence 43322 236889999999999999974
No 290
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.20 E-value=0.0015 Score=63.08 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=45.7
Q ss_pred cccCCCCCCCCccEEEecccccccccC-HHHHHHHHHhcccCCeEEEEEeCCCChh
Q 005959 307 ASKQLPYPSLSFDMLHCARCGVDWDQK-DGILLLEVDRVLKPGGYFVWTSPLTNPQ 361 (667)
Q Consensus 307 da~~Lpfpd~sFDlV~~s~~ll~~~~d-~~~~L~Ei~RvLKPGG~Lvis~p~~~~~ 361 (667)
.....+|.++|.|+|.|.+++.|+.-+ ...++++++|+|||||+|-++.|.....
T Consensus 37 As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~ 92 (185)
T COG4627 37 ASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFL 92 (185)
T ss_pred hhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchh
Confidence 445678999999999999997777633 3479999999999999999999876553
No 291
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=96.18 E-value=0.0036 Score=63.38 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=51.7
Q ss_pred eEEEeccccchhhhhhhhhcCCC---eEEEEeecCCCCCchhhH----hcccc---cccccccccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKS---VWVMNVVPTIGTNHLPMI----LDRGF---VGVLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~---vwvmnv~p~~~~~~l~~~----~~RGl---ig~~~~~c~~f~typ~tyDl~H~~ 586 (667)
..|||+|||+|.+++.|.+.-.+ |..+-+.| ..+..+ -+.|+ .=+..|..+.++. ...||+|+++
T Consensus 79 ~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~----~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~-~~~fD~Ii~~ 153 (215)
T TIGR00080 79 MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIP----ELAEKAERRLRKLGLDNVIVIVGDGTQGWEP-LAPYDRIYVT 153 (215)
T ss_pred CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHHHCCCCCeEEEECCcccCCcc-cCCCCEEEEc
Confidence 37999999999999998863222 33332222 223222 22343 1123344444333 2579999985
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.... .+.-++-+.|+|||.+|+-
T Consensus 154 ~~~~------------~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 154 AAGP------------KIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCcc------------cccHHHHHhcCcCcEEEEE
Confidence 4432 2333566889999999984
No 292
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.17 E-value=0.015 Score=64.11 Aligned_cols=96 Identities=8% Similarity=0.010 Sum_probs=70.9
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC-ceEEeecccCCC-CCCCCccEEEeccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP-AMIGSFASKQLP-YPSLSFDMLHCARCGV 328 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~-~~~~~~da~~Lp-fpd~sFDlV~~s~~ll 328 (667)
-+|||+-||+|..+..++.+......|+++|.++..++.++++ ++. +.+.+.|+..+- ...+.||+|..-- +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP--f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP--F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--C
Confidence 4899999999999999998721235699999999999877653 332 455556655432 1235799998753 2
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
..+..++..+.+.+++||.+.++.
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 233569999999999999999984
No 293
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.15 E-value=0.012 Score=62.62 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=68.7
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC---ceEEeecccC-CC--CCCCCccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP---AMIGSFASKQ-LP--YPSLSFDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~---~~~~~~da~~-Lp--fpd~sFDlV~~ 323 (667)
.++|||+=|=||.|+.+.+..| ..+|+.+|.|..+++.+++. ++. ..+...|+.. +. -..+.||+|++
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4799999999999999988876 45689999999999988765 432 3456555432 11 12468999998
Q ss_pred cccccc-----cccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 324 ARCGVD-----WDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 324 s~~ll~-----~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
---.+. ...+...++..+.++|+|||.|+++....
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 532121 12334568889999999999998877644
No 294
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=96.14 E-value=0.0036 Score=68.26 Aligned_cols=101 Identities=14% Similarity=0.130 Sum_probs=60.4
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhH----hcccccccccccccCCCCCCCccccccccCccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~----~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
.|||+|||.|.++.+|.+. .+-. .|+-+|.. .-+..+ -+.|+-+.++ +...++..+.+||+|-++-.|...
T Consensus 199 ~VLDlGCG~G~ls~~la~~-~p~~--~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g 274 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARH-SPKI--RLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDG 274 (342)
T ss_pred eEEEeccCcCHHHHHHHHh-CCCC--EEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCC
Confidence 5999999999999999863 2311 23333432 222211 1223322221 223344346899999998877532
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
.. ...-....++-++-|.|+|||.++|-.+
T Consensus 275 ~~-~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 275 IQ-TSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred cc-ccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 10 0112345788999999999999988543
No 295
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.08 E-value=0.0052 Score=63.85 Aligned_cols=106 Identities=18% Similarity=0.220 Sum_probs=72.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcccccccccccccCCCCCCCccccccccCccccccCCC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHR 596 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~~ 596 (667)
-.|-|||||-|-.|..- ..+|--|-+++++..-+.--|- + -|+. .+|-|++-+ |+|+--
T Consensus 182 ~vIaD~GCGEakiA~~~---~~kV~SfDL~a~~~~V~~cDm~---------~--vPl~--d~svDvaV~--CLSLMg--- 240 (325)
T KOG3045|consen 182 IVIADFGCGEAKIASSE---RHKVHSFDLVAVNERVIACDMR---------N--VPLE--DESVDVAVF--CLSLMG--- 240 (325)
T ss_pred eEEEecccchhhhhhcc---ccceeeeeeecCCCceeecccc---------C--CcCc--cCcccEEEe--eHhhhc---
Confidence 36899999999888743 3689999999888763321110 0 2333 488998654 677643
Q ss_pred CCCCcchhheeccccccCCcEEEEEcCHHHHHHHHH---HHhhCCCeeEEee
Q 005959 597 HRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARA---LTTRLKWDARVIE 645 (667)
Q Consensus 597 ~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~---~~~~~~W~~~~~~ 645 (667)
-++-+.+.|.+|||+|||.++|-+-......++. -.+.|-.++...+
T Consensus 241 --tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 241 --TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred --ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehh
Confidence 4667899999999999999999765554444443 3455677766654
No 296
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=96.04 E-value=0.0046 Score=61.46 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=53.1
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccccccccccCCCCC-CCccccccccCccccccCC
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTY-PRTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~c~~f~ty-p~tyDl~H~~~~~~~~~~~ 595 (667)
+|||+|||.|.+..+|.+. ..+ ++.-+|.. ..+..+.++|+--+..|..+.++.+ +++||+|-++++|.+..
T Consensus 16 ~iLDiGcG~G~~~~~l~~~-~~~---~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~-- 89 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDE-KQV---RGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR-- 89 (194)
T ss_pred EEEEeCCCCCHHHHHHHhc-cCC---cEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc--
Confidence 7999999999999999752 222 22223333 4455555667533334443333333 37999999998886654
Q ss_pred CCCCCcchhheeccccccC
Q 005959 596 RHRCSTLDIFTEIDRILRP 614 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP 614 (667)
+...+|-||-|++++
T Consensus 90 ----d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 90 ----NPEEILDEMLRVGRH 104 (194)
T ss_pred ----CHHHHHHHHHHhCCe
Confidence 244566666555544
No 297
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.02 E-value=0.055 Score=55.87 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=87.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceE-EeecccCCC---CCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMI-GSFASKQLP---YPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~-~~~da~~Lp---fpd~sFDlV~~s~~ll 328 (667)
..+.+||||+-||.||..++++|. ..|+++|..-.++..-.+....+.. ...++..+. +. +..|+++|--+++
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gA--k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~-~~~d~~v~DvSFI 155 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGA--KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFT-EKPDLIVIDVSFI 155 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCC--cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcc-cCCCeEEEEeehh
Confidence 468999999999999999999974 4699999999888776666554433 222333332 22 2678999875533
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeCCCChh--------hhhhhHH-HHhhhhhhhhhhhccceEEe
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ--------AFLRNKE-NQKRWNFVRDFVENLCWELV 388 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~--------~~lr~~e-~~~~W~~ie~l~~~~~W~ll 388 (667)
. ...+|-.+..+|+|+|.++.-.-+.... +-+++++ ....-..+..++...+|...
T Consensus 156 S----L~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 156 S----LKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVK 220 (245)
T ss_pred h----HHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEe
Confidence 2 4579999999999999988765433221 1122221 22334566677777777765
No 298
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.01 E-value=0.021 Score=58.43 Aligned_cols=95 Identities=23% Similarity=0.280 Sum_probs=68.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCC-ceEEeecccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLP-AMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl~-~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+++|||.|.|.-+..|+=. .+...|+-+|....-+.+. ++-+++ +.+...-++.+.-....||+|+|-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv-- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV-- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc--
Confidence 479999999999988887732 2445689999887655433 344666 77777777777543222999998754
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEE
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis 354 (667)
.+...++.-+...+|+||.+++.
T Consensus 145 ---a~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 145 ---ASLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred ---cchHHHHHHHHHhcccCCcchhh
Confidence 34556778889999999988653
No 299
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.99 E-value=0.032 Score=56.57 Aligned_cols=100 Identities=15% Similarity=0.021 Sum_probs=65.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC--------CCCCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp--------fpd~sFDlV~~s 324 (667)
+..+|+|||+-+|.++..+++.......|+++|+.+--. -..+.+.++|+..-+ +....+|+|+|-
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~------~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD 118 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP------IPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSD 118 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc------CCCceEEeeeccCccHHHHHHHHcCCCCcceEEec
Confidence 358999999999999999998744444588898864211 112555666654432 344457999975
Q ss_pred ccc---cccccCH-------HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 325 RCG---VDWDQKD-------GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 325 ~~l---l~~~~d~-------~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.+- -++.-|. ..++.-...+|+|||.|++-++-.
T Consensus 119 ~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 119 MAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 321 1121121 245666778999999999988743
No 300
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.024 Score=60.20 Aligned_cols=137 Identities=19% Similarity=0.225 Sum_probs=85.5
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh----cccccccccccccCCCCCCCccccccccCccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~----~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
+|+|||||+|--|.+|... .+. .+|+-+|-. .-|.++- .-|+.-++.--+.-|+..+.+||+|=++-=.-..
T Consensus 113 ~ilDlGTGSG~iai~la~~-~~~--~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKE-GPD--AEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhh-CcC--CeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCC
Confidence 9999999999999999874 333 456666654 4444432 2454222222223355545589998765432111
Q ss_pred c------------------CCCCCCCcc---hhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCC-eeEEeeeccCC
Q 005959 593 S------------------GHRHRCSTL---DIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKW-DARVIEIESNS 650 (667)
Q Consensus 593 ~------------------~~~~~c~~~---~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W-~~~~~~~~~~~ 650 (667)
. + ...++. .++-+..++|+|||++++.-....-++++++.....+ .......+..+
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~--g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~~v~~~~d~~g 267 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVG--GGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFEIVETLKDLFG 267 (280)
T ss_pred cccccChhhhccCHHHHHcc--CccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCceEEEEEecCCC
Confidence 1 1 112222 6788899999999999998777777888888888885 32222223344
Q ss_pred CccEEEEEc
Q 005959 651 DERLLICQK 659 (667)
Q Consensus 651 ~~~~li~~K 659 (667)
.+++.+.++
T Consensus 268 ~~rv~~~~~ 276 (280)
T COG2890 268 RDRVVLAKL 276 (280)
T ss_pred ceEEEEEEe
Confidence 566666654
No 301
>PRK04457 spermidine synthase; Provisional
Probab=95.96 E-value=0.016 Score=60.87 Aligned_cols=138 Identities=12% Similarity=0.113 Sum_probs=73.6
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc-cccc-------cccccccCCCCCCCcccccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-GFVG-------VLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R-Glig-------~~~~~c~~f~typ~tyDl~H~~ 586 (667)
-++|||+|||.|+++.+|... .|- +.|.-++-. .-+.++-+. ++.+ +..|--+-+...|.+||+|=++
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~-~p~--~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTY-LPD--TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHh-CCC--CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 468999999999999988752 231 223333332 333333332 1111 1123222234446789999765
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEE---EcCHHHHHHHHHHHhhCCCeeEEeeeccCCCccEEEEEc
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII---RDTARLIESARALTTRLKWDARVIEIESNSDERLLICQK 659 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~---~d~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~li~~K 659 (667)
. |+.... ........++-++-++|+|||.+++ ..+...-+.++.+.+...-.+.+...+.. .+-++++.|
T Consensus 144 ~-~~~~~~-~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~~-~N~v~~a~~ 216 (262)
T PRK04457 144 G-FDGEGI-IDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAESH-GNVAVFAFK 216 (262)
T ss_pred C-CCCCCC-ccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCCC-ccEEEEEEC
Confidence 2 332110 0112234788889999999999997 23333333344454444433344433222 246777766
No 302
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=95.93 E-value=0.0058 Score=61.75 Aligned_cols=99 Identities=14% Similarity=0.158 Sum_probs=59.6
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cccccccccccCCCCCCCccccccccCccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GFVGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Glig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
-.+|||+|||.|.|+.+|.+... .|+-+|.. +.+..+-++ |+-..++-....++.-+.+||+|.+..++.
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~-----~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA-----KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC-----EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhh
Confidence 35899999999999999986322 24444443 444444332 221112212222444457899999988886
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
++. .-.+..++-++-|++++++.+.+...
T Consensus 139 ~~~----~~~~~~~l~~l~~~~~~~~~i~~~~~ 167 (230)
T PRK07580 139 HYP----QEDAARMLAHLASLTRGSLIFTFAPY 167 (230)
T ss_pred cCC----HHHHHHHHHHHHhhcCCeEEEEECCc
Confidence 653 23455677788887766665554433
No 303
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=95.92 E-value=0.021 Score=54.09 Aligned_cols=97 Identities=18% Similarity=0.092 Sum_probs=60.1
Q ss_pred CCCEEEEeCCCCchHHHHHhh-----cCCceeEEEEecCCHHHHHHHHHcCC--C------ceEEeecccCCCCCCCCcc
Q 005959 253 GVRTILDIGCGYGSFGAHLFS-----KELLTMCIANYEASGSQVQLTLERGL--P------AMIGSFASKQLPYPSLSFD 319 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~-----~g~~~~sV~gvD~S~~ml~~A~ergl--~------~~~~~~da~~Lpfpd~sFD 319 (667)
...+|+|+|||.|.++..|+. . ....|+++|.++..++.+.++.. . ..+...+....+ .....+
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSS--PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcC--CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 457999999999999999988 3 45679999999998877765421 1 112222211111 134566
Q ss_pred EEEecccccccccCH-HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 320 MLHCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 320 lV~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+++.. |-..+. ..+|+-+.+ |+-.+++..|.=.
T Consensus 102 ~~vgL----HaCG~Ls~~~l~~~~~---~~~~~l~~vpCCy 135 (141)
T PF13679_consen 102 ILVGL----HACGDLSDRALRLFIR---PNARFLVLVPCCY 135 (141)
T ss_pred EEEEe----ecccchHHHHHHHHHH---cCCCEEEEcCCcc
Confidence 66654 334444 345665555 6666666666543
No 304
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.89 E-value=0.0016 Score=66.47 Aligned_cols=137 Identities=19% Similarity=0.195 Sum_probs=92.2
Q ss_pred CCceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccccc-cccccccCCC--CCCCccccccccCc
Q 005959 513 YNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGFVG-VLHDWCEAFP--TYPRTYDLVHAEGL 588 (667)
Q Consensus 513 ~~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGlig-~~~~~c~~f~--typ~tyDl~H~~~~ 588 (667)
.+.+|.+||+|||+|=+|-+|.+. +=-+.=+|-+ |-|-.+.|+|+-- .+|-=-..|. .=+.-||||-+..+
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~-----a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDV 197 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDM-----ADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADV 197 (287)
T ss_pred CCccceeeecccCcCcccHhHHHH-----HhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhH
Confidence 455999999999999999999872 1123344445 8899999999721 1111111244 34688999999999
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcCH----------------HHHHHHHHHHhhCCCeeEEeee-----c
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIEI-----E 647 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~~~-----~ 647 (667)
|.-. -.++.++.=..+.|.|||.|+++-.. .--..|+.+.++---+++.++. +
T Consensus 198 l~Yl------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d 271 (287)
T COG4976 198 LPYL------GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRD 271 (287)
T ss_pred HHhh------cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhh
Confidence 9855 36778999999999999999997221 1124566677776676665432 1
Q ss_pred cCC--CccEEEEEcc
Q 005959 648 SNS--DERLLICQKP 660 (667)
Q Consensus 648 ~~~--~~~~li~~K~ 660 (667)
.+. ...+.|++|+
T Consensus 272 ~g~pv~G~L~iark~ 286 (287)
T COG4976 272 AGEPVPGILVIARKK 286 (287)
T ss_pred cCCCCCCceEEEecC
Confidence 122 4566777764
No 305
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.89 E-value=0.0052 Score=62.08 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=62.4
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc--cccccccccccCCCCCCCccccccccCccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLE 592 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R--Glig~~~~~c~~f~typ~tyDl~H~~~~~~~~ 592 (667)
-..|||+|||.|-+..+|.+. .+- .+++-+|-. ..+..+-++ ++-=...|..++|+ +++||+|-+.+++.+.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~-~~~--~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~--~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRL-LPF--KHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFK--DNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHh-CCC--CeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCC--CCCEEEEEECChhhhC
Confidence 356999999999999999762 111 234555544 555555443 22111234444554 3899999999999876
Q ss_pred cCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 593 SGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 593 ~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
. .-.+..++-||-|++ +++++|.
T Consensus 119 ~----p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 119 N----PDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred C----HHHHHHHHHHHHhhc--CcEEEEE
Confidence 4 235567889999998 5788874
No 306
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=95.88 E-value=0.0052 Score=61.55 Aligned_cols=116 Identities=22% Similarity=0.256 Sum_probs=87.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhcccccccccccccCCCCCC-CccccccccCccccccCC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYP-RTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~f~typ-~tyDl~H~~~~~~~~~~~ 595 (667)
-.|||+|||.|.+-++|.+. +.|=..-|=- .+..+.-..+||+-=+-+|.-+-++.|| .+||.|=.+.-+....
T Consensus 15 srVLDLGCGdG~LL~~L~~~-k~v~g~GvEi--d~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~-- 89 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE-KQVDGYGVEI--DPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR-- 89 (193)
T ss_pred CEEEecCCCchHHHHHHHHh-cCCeEEEEec--CHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh--
Confidence 46999999999999999984 6776655421 2356778899999888889988898888 8999999988877654
Q ss_pred CCCCCcchhheeccccccCCcEEEEE------------------------------cCH----HHHHHHHHHHhhCCCee
Q 005959 596 RHRCSTLDIFTEIDRILRPEGWVIIR------------------------------DTA----RLIESARALTTRLKWDA 641 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP~G~~i~~------------------------------d~~----~~~~~~~~~~~~~~W~~ 641 (667)
.-..+|-|| ||=|.-.|++ |++ -++...+.+.+.+..++
T Consensus 90 ----~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I 162 (193)
T PF07021_consen 90 ----RPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRI 162 (193)
T ss_pred ----HHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEE
Confidence 234688888 5557788875 333 33777888888887765
Q ss_pred EEe
Q 005959 642 RVI 644 (667)
Q Consensus 642 ~~~ 644 (667)
.-.
T Consensus 163 ~~~ 165 (193)
T PF07021_consen 163 EER 165 (193)
T ss_pred EEE
Confidence 543
No 307
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=95.87 E-value=0.016 Score=61.52 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=69.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc---cc-cccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl---ig-~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||+|.++.+|... .+- .+|+-+|-. ..+.++-+ .|+ |- +..|+-+.++ +.+||+|-++-
T Consensus 123 ~~vLDlG~GsG~i~~~la~~-~~~--~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~--~~~fD~Iv~NP 197 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYA-FPE--AEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALP--GRKYDLIVSNP 197 (284)
T ss_pred CEEEEEeCchhHHHHHHHHH-CCC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccC--CCCccEEEECC
Confidence 47999999999999999863 221 134445543 44443332 354 21 2344445443 25899999863
Q ss_pred cccccc------------------CCCCCCC-cchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCee
Q 005959 588 LLSLES------------------GHRHRCS-TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDA 641 (667)
Q Consensus 588 ~~~~~~------------------~~~~~c~-~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~ 641 (667)
=+.... ++.+... ...++-++-+.|+|||++++.-.... ++++++.....|..
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTW 269 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCce
Confidence 221100 0000001 23678888999999999998644433 67787777655443
No 308
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.86 E-value=0.056 Score=55.43 Aligned_cols=120 Identities=18% Similarity=0.143 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHH----HHHHHHcCCCceEEee
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQ----VQLTLERGLPAMIGSF 306 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~m----l~~A~ergl~~~~~~~ 306 (667)
..+...++..+..+.. .+.-.++.+||-+|+.+|....++++---....|.+++.|+.. ++.|++|. ++.-...
T Consensus 52 ~P~RSKLaAai~~Gl~-~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~-NIiPIl~ 129 (229)
T PF01269_consen 52 NPFRSKLAAAILKGLE-NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP-NIIPILE 129 (229)
T ss_dssp -TTT-HHHHHHHTT-S---S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST-TEEEEES
T ss_pred CchhhHHHHHHHcCcc-ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC-ceeeeec
Confidence 4444455555433222 1223355899999999999999988753234468999999854 56666664 3332333
Q ss_pred cccCCCC----CCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 307 ASKQLPY----PSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 307 da~~Lpf----pd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|+. .|. --+.+|+|++--+ ..+..+.++.+....||+||.++++.-
T Consensus 130 DAr-~P~~Y~~lv~~VDvI~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 130 DAR-HPEKYRMLVEMVDVIFQDVA---QPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp -TT-SGGGGTTTS--EEEEEEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCC-ChHHhhcccccccEEEecCC---ChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 443 331 1237999998732 223335688889999999999999854
No 309
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.86 E-value=0.075 Score=57.90 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=80.0
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sFDlV~~s~~l 327 (667)
+.+|||+=||.|.|+..++..+.. .|.++|+++..++..++. ++. +...++|+...+..-+.||-|+++..
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p- 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP- 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC-
Confidence 479999999999999999998744 399999999999877654 333 34577888887766689999998853
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
.....++....+.+++||.+.+....+..
T Consensus 266 ----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 ----KSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ----CcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 23456888889999999999999887654
No 310
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.80 E-value=0.069 Score=63.70 Aligned_cols=126 Identities=15% Similarity=0.168 Sum_probs=72.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cccc----c-cccccccCCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV----G-VLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGli----g-~~~~~c~~f~typ~tyDl~H~~ 586 (667)
+.|||++||+|+|+-++...+-. .|+-+|.. .-+..+-+ -|+- = +-.|..+.+....++||+|=++
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~----~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAK----STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCC----EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 58999999999999999863211 34555544 33332222 2321 0 1223222222235789999876
Q ss_pred Cc-cccccCC----CCCCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEeee
Q 005959 587 GL-LSLESGH----RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEI 646 (667)
Q Consensus 587 ~~-~~~~~~~----~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~ 646 (667)
-= |..-... ...-....++-..=|+|+|||.+++......+....+.+..-.+++.....
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITA 680 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEec
Confidence 33 2211000 000123356667788999999999976665555556677777888877753
No 311
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.78 E-value=0.0085 Score=60.75 Aligned_cols=89 Identities=18% Similarity=0.167 Sum_probs=48.3
Q ss_pred eEEEeccccchhhhhhhhhcC---CCeEEEEeecCCCCCchhhHhc----ccccccccccccCCCCCC--CccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMILD----RGFVGVLHDWCEAFPTYP--RTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~---~~vwvmnv~p~~~~~~l~~~~~----RGlig~~~~~c~~f~typ--~tyDl~H~~~ 587 (667)
..|||+|||+|.+++.|.+.- ..|..+-+-| ..+..+-+ -|+-.+---.+..+..++ ..||.|++..
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~----~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIP----ELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCH----HHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 479999999999998876520 1233333322 22222221 132111111112222222 6799999855
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.+. .+.-++-+.|+|||.+++-
T Consensus 154 ~~~------------~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 154 AGP------------DIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred Ccc------------cchHHHHHhhCCCcEEEEE
Confidence 432 2333555689999999884
No 312
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.77 E-value=0.063 Score=54.68 Aligned_cols=114 Identities=20% Similarity=0.191 Sum_probs=77.6
Q ss_pred hhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCC----CceEEe
Q 005959 230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGL----PAMIGS 305 (667)
Q Consensus 230 ~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl----~~~~~~ 305 (667)
...+++..++.+.. ++++||.||-|-|.....+.++.. ..-+-++.++..++..+..|- ++.+..
T Consensus 87 EtpiMha~A~ai~t---------kggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~gw~ek~nViil~ 155 (271)
T KOG1709|consen 87 ETPIMHALAEAIST---------KGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWGWREKENVIILE 155 (271)
T ss_pred hhHHHHHHHHHHhh---------CCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhcccccccceEEEe
Confidence 35566666666652 347999999999999888877642 233568999999988877653 222222
Q ss_pred eccc-CC-CCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 306 FASK-QL-PYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 306 ~da~-~L-pfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
+-=+ .+ .++|+.||-|+---- -.+-++...+.+.+.|+|||+|.|-+.-
T Consensus 156 g~WeDvl~~L~d~~FDGI~yDTy-~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 156 GRWEDVLNTLPDKHFDGIYYDTY-SELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred cchHhhhccccccCcceeEeech-hhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 2111 12 267889999986521 2334566678889999999999987754
No 313
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.75 E-value=0.074 Score=56.40 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=60.0
Q ss_pred CCCEEEEeCCCCchHHHHHhh-cCCceeEEEEecCCHHHHHHHHHc-------CCCceEEeecccCCCCCCCCccEEEec
Q 005959 253 GVRTILDIGCGYGSFGAHLFS-KELLTMCIANYEASGSQVQLTLER-------GLPAMIGSFASKQLPYPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~-~g~~~~sV~gvD~S~~ml~~A~er-------gl~~~~~~~da~~Lpfpd~sFDlV~~s 324 (667)
.+.+|+=||||+=-+|..+.. +......|+++|.+++.++.+++- +....+..+|....+..-..||+|+.+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 346999999998766655543 323456789999999999887531 334567777877666555689999987
Q ss_pred ccccccc-cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWD-QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~-~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.. .... .+-.++|..+.+.++||..+++...
T Consensus 200 al-Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 200 AL-VGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp TT--S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred hh-cccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 43 3333 2446799999999999999998743
No 314
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.73 E-value=0.0071 Score=64.07 Aligned_cols=95 Identities=21% Similarity=0.334 Sum_probs=70.6
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-Cchh-hHhccccc----ccccccccCCCCCCCccccccccCcccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP-MILDRGFV----GVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~-~~~~RGli----g~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
+|||+|||-|+++-++.+ ..+|=|..|.-..+. ...+ -|-++|+- -.++||...=.. ||=|=+-+.|.+
T Consensus 75 ~lLDiGCGWG~l~~~aA~-~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~----fDrIvSvgmfEh 149 (283)
T COG2230 75 TLLDIGCGWGGLAIYAAE-EYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP----FDRIVSVGMFEH 149 (283)
T ss_pred EEEEeCCChhHHHHHHHH-HcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc----cceeeehhhHHH
Confidence 799999999999999987 357766666554443 2222 36779986 447777665443 888888888877
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
.. .-+..+.+-=+.++|+|||-+++.
T Consensus 150 vg----~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 150 VG----KENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred hC----cccHHHHHHHHHhhcCCCceEEEE
Confidence 63 355678888999999999999974
No 315
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=95.72 E-value=0.0069 Score=64.77 Aligned_cols=115 Identities=18% Similarity=0.224 Sum_probs=62.6
Q ss_pred eEEEeccccchh--hhhhhhhcCCCeEEEEeecCCCCCchhhHhccccccccc-ccccCCCCCCCccccccccCcccccc
Q 005959 517 RNVLDMNAHFGG--FNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLH-DWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 517 R~vlDm~~~~g~--faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~-~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
..|||+|||+|- .||+++-. +.|...-+=|..-.+...-+..-|+-.-+. ...+.++. ..||+|=|+=+.....
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~--~~~dlvvANI~~~vL~ 239 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVE--GKFDLVVANILADVLL 239 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCC--S-EEEEEEES-HHHHH
T ss_pred CEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEeccccc--ccCCEEEECCCHHHHH
Confidence 499999999995 56666653 445544443332222222222334322110 02233443 7899999865555444
Q ss_pred CCCCCCCcchhheeccccccCCcEEEEEcCH-HHHHHHHHHHhhCCCeeEEe
Q 005959 594 GHRHRCSTLDIFTEIDRILRPEGWVIIRDTA-RLIESARALTTRLKWDARVI 644 (667)
Q Consensus 594 ~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~-~~~~~~~~~~~~~~W~~~~~ 644 (667)
.++=++.+.|+|||++|++.-. +..++|.+..+. -|++...
T Consensus 240 ---------~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~ 281 (295)
T PF06325_consen 240 ---------ELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEE 281 (295)
T ss_dssp ---------HHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEE
T ss_pred ---------HHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEE
Confidence 4666789999999999997321 123344444455 6665444
No 316
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.72 E-value=0.017 Score=62.00 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=67.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc---cc-cccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VG-VLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl---ig-~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||.|.++.+|... .+. .+|+-+|-. ..+..+-+ .|+ |- +..|+.+.++ +.+||+|-++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~-~p~--~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~--~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA-FPD--AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP--GRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHH-CCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--CCCccEEEECC
Confidence 47999999999999999863 232 345555654 44444333 343 21 3345555554 36899999863
Q ss_pred cccccc------------------CCCCCC-CcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhC
Q 005959 588 LLSLES------------------GHRHRC-STLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRL 637 (667)
Q Consensus 588 ~~~~~~------------------~~~~~c-~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~ 637 (667)
-+.... ++.+.. ....++-+.-+.|+|||++++.-..+ .+++.++....
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~ 277 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDV 277 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhC
Confidence 221110 000000 11367888899999999999853333 34566665543
No 317
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.63 E-value=0.068 Score=60.16 Aligned_cols=97 Identities=20% Similarity=0.236 Sum_probs=68.9
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccCCCCC---CCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQLPYP---SLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~Lpfp---d~sFDlV~~s~ 325 (667)
..++||+=||.|.|+..|+++ ...|+|+|+++++++.|++. ++ ++.|..+++++..-. ...||+|+..-
T Consensus 294 ~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDP 370 (432)
T COG2265 294 GERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDP 370 (432)
T ss_pred CCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECC
Confidence 478999999999999999976 46799999999999877654 44 467777887776533 35789998652
Q ss_pred cccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
-.-- -...+++.+. .++|-.++++|..+
T Consensus 371 PR~G---~~~~~lk~l~-~~~p~~IvYVSCNP 398 (432)
T COG2265 371 PRAG---ADREVLKQLA-KLKPKRIVYVSCNP 398 (432)
T ss_pred CCCC---CCHHHHHHHH-hcCCCcEEEEeCCH
Confidence 2110 1124555544 45777888888653
No 318
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.63 E-value=0.0084 Score=60.63 Aligned_cols=99 Identities=12% Similarity=0.099 Sum_probs=61.7
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc----ccccccccccCCCCCCCccccccccCccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG----lig~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
-.+|||+|||.|.|+.+|.+. .. .|+=+|-. +.+..+.+|- +..-..=.+..+...|.+||+|=+..++.
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~--~~---~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~ 130 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR--GA---IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLI 130 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC--CC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHH
Confidence 468999999999999999863 21 34444543 4555554442 10001111122222347899998877765
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
.+. ...+..++-++.|+++|++++.+...
T Consensus 131 ~~~----~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 131 HYP----ASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred hCC----HHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 543 23456788999999999888887543
No 319
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.61 E-value=0.11 Score=53.35 Aligned_cols=98 Identities=16% Similarity=0.106 Sum_probs=69.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCC--ceEEeeccc-CCC-----CCCCCccEE
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLP--AMIGSFASK-QLP-----YPSLSFDML 321 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~--~~~~~~da~-~Lp-----fpd~sFDlV 321 (667)
+++.||||.=||..+..++..-.....|+++|+++...+.+.+ .|+. +.+..+.+. .|+ .+.++||++
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa 153 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFA 153 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEE
Confidence 4899999998888877777664456779999999988776643 2332 233333321 111 356899999
Q ss_pred EecccccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 322 ~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
+.- ++.++....+.++.++||+||.+++.-
T Consensus 154 FvD----adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 154 FVD----ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred EEc----cchHHHHHHHHHHHhhcccccEEEEec
Confidence 853 455556689999999999999999864
No 320
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.54 E-value=0.0045 Score=55.23 Aligned_cols=96 Identities=18% Similarity=0.075 Sum_probs=39.1
Q ss_pred EEeCCCCchHHHHHhhcCCce--eEEEEecCCH---HHHHHHHHcCC--CceEEeecccCC--CCCCCCccEEEeccccc
Q 005959 258 LDIGCGYGSFGAHLFSKELLT--MCIANYEASG---SQVQLTLERGL--PAMIGSFASKQL--PYPSLSFDMLHCARCGV 328 (667)
Q Consensus 258 LDIGCGtG~~t~~La~~g~~~--~sV~gvD~S~---~ml~~A~ergl--~~~~~~~da~~L--pfpd~sFDlV~~s~~ll 328 (667)
||||+..|..+..+++.--.. ..++++|..+ ...+..++.+. .+.+..++.... .+++++||+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 689999999998888652111 3688999988 33344443333 345555554321 133578999997743
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
|-.+.....+..+.+.|+|||++++.+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 323444578899999999999999865
No 321
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=95.47 E-value=0.087 Score=57.85 Aligned_cols=108 Identities=18% Similarity=0.250 Sum_probs=72.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCc-eeEEEEecCCHHHHHHHH----HcCCCc-eEEeecccCCC--CC-CCCccEEEe
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELL-TMCIANYEASGSQVQLTL----ERGLPA-MIGSFASKQLP--YP-SLSFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~-~~sV~gvD~S~~ml~~A~----ergl~~-~~~~~da~~Lp--fp-d~sFDlV~~ 323 (667)
++.+|||+-++.|.=|.++++..-. ...|+++|.++.-++... +-|+.. .+...|...++ .+ .+.||.|..
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iLl 235 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILL 235 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEEE
Confidence 4589999999999999999887422 234699999987665443 336553 45555655554 22 235999985
Q ss_pred ----ccc-ccc--------cccC--------HHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 324 ----ARC-GVD--------WDQK--------DGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 324 ----s~~-ll~--------~~~d--------~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
+.. .+. +... ...+|....++|||||.|+.++-....
T Consensus 236 DaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 236 DAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred CCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 211 121 1111 125789999999999999999876543
No 322
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.46 E-value=0.18 Score=50.46 Aligned_cols=102 Identities=21% Similarity=0.204 Sum_probs=68.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--CCceEEeecccCC-CCCCC--CccEEEe
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--LPAMIGSFASKQL-PYPSL--SFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g--l~~~~~~~da~~L-pfpd~--sFDlV~~ 323 (667)
.+.++||+=+|+|.++...+.+|.. .++.+|.+...++..+++ + .+..+...|+... +.... +||+|+.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 3589999999999999999999854 578899999988777654 3 2344454554422 22222 4999998
Q ss_pred cccccccc-cCHHHHHH--HHHhcccCCeEEEEEeCC
Q 005959 324 ARCGVDWD-QKDGILLL--EVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 324 s~~ll~~~-~d~~~~L~--Ei~RvLKPGG~Lvis~p~ 357 (667)
--- ++.. -+....+. +-..+|+|+|.+++....
T Consensus 121 DPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 121 DPP-YAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 754 3321 11122233 356789999999997553
No 323
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=95.29 E-value=0.0019 Score=57.12 Aligned_cols=93 Identities=26% Similarity=0.265 Sum_probs=56.7
Q ss_pred EEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc----c-cc-cccccccCCCCCCCccccccccCc-cc
Q 005959 519 VLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----F-VG-VLHDWCEAFPTYPRTYDLVHAEGL-LS 590 (667)
Q Consensus 519 vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG----l-ig-~~~~~c~~f~typ~tyDl~H~~~~-~~ 590 (667)
|||+|||.|.+..+|.+.-+.--...+.-.|-. ..|..+.++. + += +..|. +.++..-.+||+|=|+++ |.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~-~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA-RDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT-TCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH-hHCcccCCCeeEEEEcCCccC
Confidence 799999999999999863100011455555654 5666555554 2 11 12222 223433469999999777 55
Q ss_pred cccCCCCCCCcchhheeccccccCCc
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEG 616 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G 616 (667)
+. ..-.+..+|=++=|+|||||
T Consensus 80 ~~----~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HL----SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GS----SHHHHHHHHHHHHHTEEEEE
T ss_pred CC----CHHHHHHHHHHHHHHhCCCC
Confidence 53 44566789999999999998
No 324
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=95.26 E-value=0.0082 Score=58.61 Aligned_cols=114 Identities=20% Similarity=0.199 Sum_probs=66.6
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc---cccccccccCCCCCCCccccccccC
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl---ig~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
-.+|||+|||+|-.+.+|... .+-.. |+-+|-. .-+..+.+ -|+ --+.+|+.++++ +..||+|=++-
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~-~~~~~--v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~--~~~fD~Iv~NP 106 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKR-GPDAK--VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP--DGKFDLIVSNP 106 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHT-STCEE--EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC--TTCEEEEEE--
T ss_pred CCeEEEecCChHHHHHHHHHh-CCCCE--EEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc--ccceeEEEEcc
Confidence 456999999999999999873 34333 3333433 33333322 222 234567777766 48999998865
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEE--EEcCHHHHHHHHHHHh
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVI--IRDTARLIESARALTT 635 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i--~~d~~~~~~~~~~~~~ 635 (667)
=|..-. ......+..++-+-=++|+|||.++ ++.....-..++++..
T Consensus 107 P~~~~~-~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 107 PFHAGG-DDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp -SBTTS-HCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred chhccc-ccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHHhcC
Confidence 432211 0011335578889999999999774 4544433333444443
No 325
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.13 E-value=0.012 Score=57.59 Aligned_cols=142 Identities=22% Similarity=0.347 Sum_probs=68.6
Q ss_pred CCCceeEEEeccccchhhhhhhhhcC---CCeEEEEeecCCCCCchhhHhccccc---ccccccccCCCCCCCccccccc
Q 005959 512 PYNMVRNVLDMNAHFGGFNSALLEKG---KSVWVMNVVPTIGTNHLPMILDRGFV---GVLHDWCEAFPTYPRTYDLVHA 585 (667)
Q Consensus 512 ~~~~~R~vlDm~~~~g~faa~l~~~~---~~vwvmnv~p~~~~~~l~~~~~RGli---g~~~~~c~~f~typ~tyDl~H~ 585 (667)
+.+.-.+|||+||+-|||..++++.. ..|+-+-+.|.+....+..+ +|=+ .....-.+.++.=...+|+|-|
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~~ 97 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVLS 97 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEEE
T ss_pred CcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceecc
Confidence 34568999999999999999999854 33556666666433222222 2311 1111222333211157999999
Q ss_pred cCccccccC--CCCCCCcchhhee---ccccccCCcEEEEE-----cCHHHHHHHHHHHhhCCCeeEEeeecc---CCCc
Q 005959 586 EGLLSLESG--HRHRCSTLDIFTE---IDRILRPEGWVIIR-----DTARLIESARALTTRLKWDARVIEIES---NSDE 652 (667)
Q Consensus 586 ~~~~~~~~~--~~~~c~~~~~l~E---~dRiLRP~G~~i~~-----d~~~~~~~~~~~~~~~~W~~~~~~~~~---~~~~ 652 (667)
+..+..-.. ..+--.+..++-+ +-..|+|||.+|+. +..+++..++..=+. +.+.+... .+.|
T Consensus 98 D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~----v~~~Kp~~sr~~s~E 173 (181)
T PF01728_consen 98 DMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSK----VKIVKPPSSRSESSE 173 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHH----EEEEE-TTSBTTCBE
T ss_pred ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeE----EEEEECcCCCCCccE
Confidence 885432210 0000011112222 23559999988874 223444544442222 34443332 2457
Q ss_pred cEEEEEc
Q 005959 653 RLLICQK 659 (667)
Q Consensus 653 ~~li~~K 659 (667)
..+||.+
T Consensus 174 ~Ylv~~~ 180 (181)
T PF01728_consen 174 EYLVCRG 180 (181)
T ss_dssp EEEESEE
T ss_pred EEEEEcC
Confidence 7777753
No 326
>PRK07402 precorrin-6B methylase; Provisional
Probab=95.07 E-value=0.047 Score=54.35 Aligned_cols=109 Identities=16% Similarity=0.120 Sum_probs=56.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh----cccc--ccccc-ccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF--VGVLH-DWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~----~RGl--ig~~~-~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|+|+|||+|.++..+....... .|+-+|-. ..+..+- +.|+ +=+++ |-.+.++...-.+|.++..
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~---~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~-- 116 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKG---RVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE-- 116 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCC---EEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE--
Confidence 369999999999988776421111 22223322 2222221 1233 11111 1111111111124544431
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcC-HHHHHHHHHHHhhCC
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-ARLIESARALTTRLK 638 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-~~~~~~~~~~~~~~~ 638 (667)
....+..++-++-|+|+|||++++... .+.+.++.+..+.+.
T Consensus 117 --------~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~ 159 (196)
T PRK07402 117 --------GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQ 159 (196)
T ss_pred --------CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcC
Confidence 113456889999999999999998753 344555556565553
No 327
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=94.90 E-value=0.029 Score=56.43 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=71.3
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC--CchhhHhcccccccccccccCCCC-----CCCccccccccCccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT--NHLPMILDRGFVGVLHDWCEAFPT-----YPRTYDLVHAEGLLS 590 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~--~~l~~~~~RGlig~~~~~c~~f~t-----yp~tyDl~H~~~~~~ 590 (667)
.+||+|||.|.|..+|....-+.-.+-|=+.... ..+.-+..+|+-.+.--.|.+.-. -|.+.|.||-..- +
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-D 98 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-D 98 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-C
Confidence 8999999999999999865333323222222221 344556667763333222333220 1478888776221 2
Q ss_pred cccCCC--CCCCcc-hhheeccccccCCcEEEEE-cCHHHHHHHHHHHhhC--CCeeE
Q 005959 591 LESGHR--HRCSTL-DIFTEIDRILRPEGWVIIR-DTARLIESARALTTRL--KWDAR 642 (667)
Q Consensus 591 ~~~~~~--~~c~~~-~~l~E~dRiLRP~G~~i~~-d~~~~~~~~~~~~~~~--~W~~~ 642 (667)
.|-..+ +|.-+. ..|-++-|+|+|||.+.++ |..+..+.+.+.+... .++..
T Consensus 99 PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 99 PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp ---SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 233211 244443 7788999999999999985 6667777777776664 55544
No 328
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=94.76 E-value=0.23 Score=52.28 Aligned_cols=111 Identities=19% Similarity=0.207 Sum_probs=78.5
Q ss_pred HHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCC--CceEEeec
Q 005959 234 SHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGL--PAMIGSFA 307 (667)
Q Consensus 234 ~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl--~~~~~~~d 307 (667)
+..+..+|...+| .+|||-|.|.|+++..+++.-.++..+...|+++.-.+.|++ .++ ++.+..-|
T Consensus 94 ia~I~~~L~i~PG--------svV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrD 165 (314)
T KOG2915|consen 94 IAMILSMLEIRPG--------SVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRD 165 (314)
T ss_pred HHHHHHHhcCCCC--------CEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEee
Confidence 3456677777776 899999999999999999886567788999998877666654 343 34455556
Q ss_pred ccCCCCC--CCCccEEEecccccccccCHHHHHHHHHhcccCCe-EEEEEeCCC
Q 005959 308 SKQLPYP--SLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGG-YFVWTSPLT 358 (667)
Q Consensus 308 a~~Lpfp--d~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG-~Lvis~p~~ 358 (667)
+....|. +..+|+|+.-. +.+-.++-.+..+||.+| +|+--.|+.
T Consensus 166 Vc~~GF~~ks~~aDaVFLDl------PaPw~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 166 VCGSGFLIKSLKADAVFLDL------PAPWEAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred cccCCccccccccceEEEcC------CChhhhhhhhHHHhhhcCceEEeccHHH
Confidence 6655554 57899998652 344456777777999876 555555554
No 329
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.75 E-value=0.12 Score=55.38 Aligned_cols=135 Identities=16% Similarity=0.131 Sum_probs=85.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHH---HHHH----HcCC---------------------CceE-
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV---QLTL----ERGL---------------------PAMI- 303 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml---~~A~----ergl---------------------~~~~- 303 (667)
..-+||-=|||.|.++..|+..|+. +-|.+.|--|+ .++. ..+. ++.+
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~~---~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~P 226 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGFK---CQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIP 226 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhccc---ccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCc
Confidence 4467999999999999999988754 56778887775 2222 2110 0000
Q ss_pred ----------------EeecccC---CCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhh
Q 005959 304 ----------------GSFASKQ---LPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFL 364 (667)
Q Consensus 304 ----------------~~~da~~---Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~l 364 (667)
..+|..+ .+-..++||+|+..+- +.-..+.-..+..|..+|||||+++=..|...+...-
T Consensus 227 D~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfF-IDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~ 305 (369)
T KOG2798|consen 227 DIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFF-IDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDT 305 (369)
T ss_pred cccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEE-eechHHHHHHHHHHHHhccCCcEEEeccceeeeccCC
Confidence 0011100 0111246999987754 5555566689999999999999999777765442111
Q ss_pred hh----HHHHhhhhhhhhhhhccceEEeecc
Q 005959 365 RN----KENQKRWNFVRDFVENLCWELVSQQ 391 (667)
Q Consensus 365 r~----~e~~~~W~~ie~l~~~~~W~ll~~~ 391 (667)
.. ..-....+.+..+++..+|+.+.+.
T Consensus 306 ~g~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 306 HGVENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred CCCcccccccccHHHHHHHHHhcCcEEEEee
Confidence 11 1112345677788889999988765
No 330
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=94.74 E-value=0.028 Score=60.06 Aligned_cols=97 Identities=25% Similarity=0.360 Sum_probs=65.6
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhccccccccc-ccc-----cCCCCCCCccccccccCcc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLH-DWC-----EAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~-~~c-----~~f~typ~tyDl~H~~~~~ 589 (667)
=|.|||+|||-|-|.=.|+.. .+-.|+-+=|..-. .+|+-+-+-++|.-. -.. |..|. ..+||+|-|.|++
T Consensus 116 gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf-~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLF-YLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHH-HHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 479999999999999888874 45556666554433 333333333333110 011 33555 6899999999998
Q ss_pred ccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 590 SLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 590 ~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
-+ |-+-.+.|.++-..|||||-+|+.
T Consensus 193 YH------rr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 193 YH------RRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred hc------cCCHHHHHHHHHHhhCCCCEEEEE
Confidence 74 334447888999999999999974
No 331
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=94.74 E-value=0.014 Score=62.30 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=62.5
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc------c--ccccccccccCCCCCCCcc----c-c
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------G--FVGVLHDWCEAFPTYPRTY----D-L 582 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R------G--lig~~~~~c~~f~typ~ty----D-l 582 (667)
.+|||+|||.|.++..|++.-.. .-+|++.|-. .-|..+.++ + +.++..|.++.++. |..+ + +
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~--~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~-~~~~~~~~~~~ 141 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ--PARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL-PPEPAAGRRLG 141 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc--CCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh-hcccccCCeEE
Confidence 46999999999999999863111 2468888877 666666554 2 23556676665432 2223 2 3
Q ss_pred ccccCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 583 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+.+...|.+.. +-....+|-++=+.|+|||.|++.
T Consensus 142 ~~~gs~~~~~~----~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFT----PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCCC----HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 33333333332 223446899999999999999973
No 332
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=94.69 E-value=0.025 Score=56.98 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=48.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc----cc--cccc-cccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR----GF--VGVL-HDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R----Gl--ig~~-~~~c~~f~typ~tyDl~H~~~~ 588 (667)
..|||+|||+|.+++.|..... .|.-+|-. +.+..+-++ |+ +-+. .|.-+.++. ..+||+|.++..
T Consensus 80 ~~VLeiG~GsG~~t~~la~~~~-----~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~I~~~~~ 153 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHLVR-----RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPA-YAPFDRILVTAA 153 (212)
T ss_pred CEEEEECCCccHHHHHHHHHhC-----EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCc-CCCcCEEEEccC
Confidence 4799999999999987765321 23333332 223322221 33 1111 121122221 168999998654
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+... .-++-+.|+|||.+++.
T Consensus 154 ~~~~------------~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 154 APEI------------PRALLEQLKEGGILVAP 174 (212)
T ss_pred chhh------------hHHHHHhcCCCcEEEEE
Confidence 4322 23455899999999985
No 333
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.68 E-value=0.11 Score=57.62 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=33.3
Q ss_pred CCCCCccEEEecccccccccCHH--------------------------------------HHHHHHHhcccCCeEEEEE
Q 005959 313 YPSLSFDMLHCARCGVDWDQKDG--------------------------------------ILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 313 fpd~sFDlV~~s~~ll~~~~d~~--------------------------------------~~L~Ei~RvLKPGG~Lvis 354 (667)
||+++.+++|++.+ +||..... .+|+-=.+-|.|||.++++
T Consensus 158 fP~~Slh~~~Ss~s-lHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 158 FPARSIDVFHSAFS-LHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred cCCCceEEEEeecc-ceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 89999999999988 88874211 1333344568899999998
Q ss_pred eCCCC
Q 005959 355 SPLTN 359 (667)
Q Consensus 355 ~p~~~ 359 (667)
..+..
T Consensus 237 ~~Gr~ 241 (386)
T PLN02668 237 CLGRT 241 (386)
T ss_pred EecCC
Confidence 76653
No 334
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=94.63 E-value=0.023 Score=57.91 Aligned_cols=97 Identities=13% Similarity=0.091 Sum_probs=56.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchhhHhccccccc--------------ccccccCCCCCC----C
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGV--------------LHDWCEAFPTYP----R 578 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~--------------~~~~c~~f~typ----~ 578 (667)
..|||+|||.|-.|.+|.+.+..|..+=++|+--. .+.-+.|+-.. +.-+|--|-.++ .
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVE---QFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHH---HHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 48999999999999999997777877777665221 01112222110 011222221111 2
Q ss_pred ccccccccCccccccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 579 TYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 579 tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
+||+|-...+|.+.. ...-..++-.|-|+|||||++++
T Consensus 113 ~fD~i~D~~~~~~l~----~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 113 PVDAVYDRAALIALP----EEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CcCEEEechhhccCC----HHHHHHHHHHHHHHcCCCCeEEE
Confidence 466655545554332 12223578889999999997544
No 335
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.48 E-value=0.18 Score=53.22 Aligned_cols=105 Identities=10% Similarity=0.140 Sum_probs=58.2
Q ss_pred CCCEEEEeCCCC--chHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---CCC--ceEEeecccCCC----------C--
Q 005959 253 GVRTILDIGCGY--GSFGAHLFSKELLTMCIANYEASGSQVQLTLER---GLP--AMIGSFASKQLP----------Y-- 313 (667)
Q Consensus 253 ~~~~VLDIGCGt--G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---gl~--~~~~~~da~~Lp----------f-- 313 (667)
+.+..||||||- -..+-..+++-.+...|+-+|+.+-.+..++.. ... ..++.+|..+.. +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 468999999994 334555666544667899999999888755432 233 456777654421 0
Q ss_pred CCCCccEEEeccccccccc---CHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 314 PSLSFDMLHCARCGVDWDQ---KDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 314 pd~sFDlV~~s~~ll~~~~---d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.++..=+++ ..+ +|+.+ ++..++..+...|.||.+|+++.....
T Consensus 148 ~~rPVavll-~~v-Lh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 148 FDRPVAVLL-VAV-LHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp TTS--EEEE-CT--GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCCeeeee-eee-eccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 122333333 334 66653 456899999999999999999987654
No 336
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=94.48 E-value=0.029 Score=58.01 Aligned_cols=95 Identities=16% Similarity=0.257 Sum_probs=67.2
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc-ccccccccc----CCCCCCCccccccccCcccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-VGVLHDWCE----AFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl-ig~~~~~c~----~f~typ~tyDl~H~~~~~~~ 591 (667)
.|||+|||-|.++-.|...+ -+|.-.|.. ..+.++-.+.+ -|+.-+|.. .+-.=--+||.|=|..+..+
T Consensus 62 ~vLDvGCGgG~Lse~mAr~G-----a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 62 RVLDVGCGGGILSEPLARLG-----ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred eEEEecCCccHhhHHHHHCC-----CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 48999999999999999855 477788876 77777664443 223323321 11110047999999888887
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
.. +...++.+..+.+||||-++++.-
T Consensus 137 v~------dp~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 137 VP------DPESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred cC------CHHHHHHHHHHHcCCCcEEEEecc
Confidence 65 344689999999999999999754
No 337
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=94.45 E-value=0.096 Score=52.37 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=68.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C-CCceEEeecccCCCCCCCCccEEEecccccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G-LPAMIGSFASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g-l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
..+.|+|+|+|.++...++. .-.|.+++.++.....|.++ | .+..++.+|+....| ...|+|+|...--.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhHH
Confidence 67999999999998777765 44689999999888888765 1 345677888888777 46899999753112
Q ss_pred cccC-HHHHHHHHHhcccCCeEEEE
Q 005959 330 WDQK-DGILLLEVDRVLKPGGYFVW 353 (667)
Q Consensus 330 ~~~d-~~~~L~Ei~RvLKPGG~Lvi 353 (667)
..+. .-..+..+...||-++.++=
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred hhcccccHHHHHHHHHhhcCCcccc
Confidence 2222 23467777778888888763
No 338
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=94.38 E-value=0.31 Score=49.58 Aligned_cols=115 Identities=13% Similarity=0.080 Sum_probs=71.4
Q ss_pred EEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCC-CccEEEecccccc
Q 005959 257 ILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSL-SFDMLHCARCGVD 329 (667)
Q Consensus 257 VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~-sFDlV~~s~~ll~ 329 (667)
|.||||--|.+..+|++++. ...+++.|+++.-++.|++. ++. +.+..+|-.. +++.+ ..|.|+.+.+.-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~-~l~~~e~~d~ivIAGMGG~ 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE-VLKPGEDVDTIVIAGMGGE 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG-G--GGG---EEEEEEE-HH
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc-ccCCCCCCCEEEEecCCHH
Confidence 68999999999999999974 56789999999999888754 433 3344444221 23333 3788887654111
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeec
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 390 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~ 390 (667)
-....|.+....++..-.|++.-.. ....++.+....+|.++.+
T Consensus 79 ---lI~~ILe~~~~~~~~~~~lILqP~~--------------~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 79 ---LIIEILEAGPEKLSSAKRLILQPNT--------------HAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp ---HHHHHHHHTGGGGTT--EEEEEESS---------------HHHHHHHHHHTTEEEEEE
T ss_pred ---HHHHHHHhhHHHhccCCeEEEeCCC--------------ChHHHHHHHHHCCCEEEEe
Confidence 1245777777777776777775331 2345677888888888755
No 339
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.28 E-value=0.11 Score=56.91 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=38.0
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEeecccC
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGSFASKQ 310 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~~da~~ 310 (667)
.+|||+=||.|.++..|++. ...|+|+|.++++++.|++. ++ ++.+..+++++
T Consensus 198 ~~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred CcEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 37999999999999999987 35699999999999887643 44 45666555443
No 340
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=94.21 E-value=0.069 Score=49.83 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=34.4
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 005959 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (667)
Q Consensus 256 ~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er 297 (667)
++||||||.|.++..+++.+ ....++++|+++.+.+.+++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHH
Confidence 48999999999999998875 334799999999998877653
No 341
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=94.20 E-value=0.071 Score=56.66 Aligned_cols=105 Identities=19% Similarity=0.238 Sum_probs=70.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHH----HcCCCce-EEeecccCC-C-CCCCCccEEEe--
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTL----ERGLPAM-IGSFASKQL-P-YPSLSFDMLHC-- 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~----ergl~~~-~~~~da~~L-p-fpd~sFDlV~~-- 323 (667)
+..+|||+.++.|.=+.++++.-.....+++.|.+..-+...+ +-|+... ....|.... + .....||.|+.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDa 164 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDA 164 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEEC
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcCC
Confidence 4578999999999999999887444567999999988775543 3355443 333455444 1 23346999985
Q ss_pred --ccc-ccccccC----------------HHHHHHHHHhcc----cCCeEEEEEeCC
Q 005959 324 --ARC-GVDWDQK----------------DGILLLEVDRVL----KPGGYFVWTSPL 357 (667)
Q Consensus 324 --s~~-ll~~~~d----------------~~~~L~Ei~RvL----KPGG~Lvis~p~ 357 (667)
+.. .+.-.++ ..++|....+.+ ||||+++.++-.
T Consensus 165 PCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 165 PCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp SCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 211 1111111 125788999999 999999999874
No 342
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.08 E-value=0.2 Score=50.43 Aligned_cols=136 Identities=16% Similarity=0.089 Sum_probs=71.3
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHH----------HHHHHHHcCC-CceEEeecccCCCCCCCCccEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGS----------QVQLTLERGL-PAMIGSFASKQLPYPSLSFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~----------ml~~A~ergl-~~~~~~~da~~Lpfpd~sFDlV 321 (667)
+..+|+|+=.|.|.+|+.|+..--....|+++-..+. +-..+++... +..........++ +.+..|++
T Consensus 48 pg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~pq~~d~~ 126 (238)
T COG4798 48 PGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-APQKLDLV 126 (238)
T ss_pred CCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CCCccccc
Confidence 3489999999999999999876222223444322221 1222222211 1111111222233 33445555
Q ss_pred Eecccc-------cccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHH--HhhhhhhhhhhhccceEEeec
Q 005959 322 HCARCG-------VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKEN--QKRWNFVRDFVENLCWELVSQ 390 (667)
Q Consensus 322 ~~s~~l-------l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~--~~~W~~ie~l~~~~~W~ll~~ 390 (667)
+..... +| .....++..++++.|||||.+++.++....-..+++... +-.-..+....+.-+|.+..+
T Consensus 127 ~~~~~yhdmh~k~i~-~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 127 PTAQNYHDMHNKNIH-PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred ccchhhhhhhccccC-cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeee
Confidence 543221 22 233467999999999999999999876544222222211 111223344455666666544
No 343
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=94.05 E-value=0.012 Score=52.90 Aligned_cols=97 Identities=25% Similarity=0.348 Sum_probs=56.4
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cc-------ccccccccccCCCCCCCccccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RG-------FVGVLHDWCEAFPTYPRTYDLVHA 585 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RG-------lig~~~~~c~~f~typ~tyDl~H~ 585 (667)
.|||++||.|.|..++++.. .-+++=.|-. ..+.++-. .| +.|=+.+..+.++. ..||+|=+
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~----~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~D~Iv~ 76 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG----AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPD--GKFDLIVT 76 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC----TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTT--T-EEEEEE
T ss_pred EEEEcCcchHHHHHHHHHHC----CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccC--ceeEEEEE
Confidence 69999999999999998742 2233333322 11111111 11 13333344445555 88999999
Q ss_pred cCccccccCCC--CCCCcchhheeccccccCCcEEEE
Q 005959 586 EGLLSLESGHR--HRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 586 ~~~~~~~~~~~--~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
+--|....... .+-....++-++.|+|||||.+++
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 88886532100 112344778899999999999886
No 344
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=94.02 E-value=0.15 Score=51.28 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=65.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH----HHcCCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT----LERGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A----~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
..++|||+|.|.|..+..-+..|.. .++..|+.+..++.. +.+++.+.+...+ +-..+..||+|+.+.+++
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d---~~g~~~~~Dl~LagDlfy 153 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANGVSILFTHAD---LIGSPPAFDLLLAGDLFY 153 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhccceeEEeecc---ccCCCcceeEEEeeceec
Confidence 3589999999999998888887643 467778776655443 3345455554333 223677899999998855
Q ss_pred ccccCHHHHHHHHHhcccC-CeEEEEEeCCCCh
Q 005959 329 DWDQKDGILLLEVDRVLKP-GGYFVWTSPLTNP 360 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKP-GG~Lvis~p~~~~ 360 (667)
.. +...+++. +.+.|+. |-.+++-+|.-.+
T Consensus 154 ~~-~~a~~l~~-~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 154 NH-TEADRLIP-WKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred Cc-hHHHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence 54 33346666 5555555 5555555665443
No 345
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=93.87 E-value=0.13 Score=53.61 Aligned_cols=126 Identities=13% Similarity=0.211 Sum_probs=82.2
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEe--ecCCCC-CchhhHh----ccc--ccccccccccCCCCCCCcccccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNV--VPTIGT-NHLPMIL----DRG--FVGVLHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv--~p~~~~-~~l~~~~----~RG--lig~~~~~c~~f~typ~tyDl~H~~ 586 (667)
...|||+|||.|.-+=+|.+...++=+.-| -+.... ++-.+.+ +|- +=+=+..|+.++.. .+||+|=|+
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~--~~fD~Ii~N 122 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF--ASFDLIICN 122 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc--cccCEEEeC
Confidence 889999999999877777652122322221 111111 1111111 222 12344567777776 579999998
Q ss_pred CccccccCC------------CCCCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEE
Q 005959 587 GLLSLESGH------------RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARV 643 (667)
Q Consensus 587 ~~~~~~~~~------------~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~ 643 (667)
-=|-.-... ...|.+++++-=--++|+|||++.+=-.++.+.++-.++++++|+...
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence 665332210 133666677777789999999999999999999999999999998654
No 346
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=93.77 E-value=0.071 Score=52.31 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=44.6
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC--CceEEeecccCCC--CCCCC-ccEEEec
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP--YPSLS-FDMLHCA 324 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lp--fpd~s-FDlV~~s 324 (667)
.+|+|+-||.|..+..+++.. ..|+++|.++..++.|+.. |+ ++.+.++|...+. +..+. ||+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 369999999999999999873 4589999999999888754 43 4567777765442 22222 8999986
No 347
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.71 E-value=0.15 Score=55.41 Aligned_cols=109 Identities=17% Similarity=0.123 Sum_probs=62.0
Q ss_pred cCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH--HHcCCCc-----eEEeecccCCCCCC-CCccEEEe
Q 005959 252 AGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT--LERGLPA-----MIGSFASKQLPYPS-LSFDMLHC 323 (667)
Q Consensus 252 ~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A--~ergl~~-----~~~~~da~~Lpfpd-~sFDlV~~ 323 (667)
..+.+|||+|.|+|.-...+..--..-.+++-++.|+..-+.. .+.++.. .-......+++++. ..|++|+.
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence 3567899999999976655543311122344556666543322 1222110 11112233455442 36777776
Q ss_pred cccccccccCH--HHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 324 ARCGVDWDQKD--GILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 324 s~~ll~~~~d~--~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
..-+++....- ...++.+..++.|||.|+|.+++...
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 65544433111 23788899999999999999987643
No 348
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.66 E-value=0.63 Score=51.40 Aligned_cols=127 Identities=14% Similarity=0.126 Sum_probs=83.9
Q ss_pred cccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCcee--------------------------
Q 005959 226 IFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTM-------------------------- 279 (667)
Q Consensus 226 ~yd~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~-------------------------- 279 (667)
.+++.+..-+.++..+-...+ +. ....++|==||+|++....+..+....
T Consensus 168 ~~~g~ApLketLAaAil~lag--w~--~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~e 243 (381)
T COG0116 168 VYDGPAPLKETLAAAILLLAG--WK--PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREE 243 (381)
T ss_pred ccCCCCCchHHHHHHHHHHcC--CC--CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHH
Confidence 344445555566655543333 22 125899999999999887776532111
Q ss_pred ------------EEEEecCCHHHHHHHHHc----CCC--ceEEeecccCCCCCCCCccEEEecccc-cccccC--H----
Q 005959 280 ------------CIANYEASGSQVQLTLER----GLP--AMIGSFASKQLPYPSLSFDMLHCARCG-VDWDQK--D---- 334 (667)
Q Consensus 280 ------------sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~Lpfpd~sFDlV~~s~~l-l~~~~d--~---- 334 (667)
.+++.|+++.+++.|+.+ |+. +.|.++++..++-+-+.+|+|+|+--. .-.... .
T Consensus 244 a~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY 323 (381)
T COG0116 244 AEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLY 323 (381)
T ss_pred HHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHH
Confidence 277999999999988754 443 567888988887554789999998430 111111 1
Q ss_pred HHHHHHHHhcccCCeEEEEEeC
Q 005959 335 GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 335 ~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
..+...+++.++--+.++|+..
T Consensus 324 ~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 324 REFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHHHHhcCCceEEEEcc
Confidence 2355567788888889998876
No 349
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=93.66 E-value=0.04 Score=56.84 Aligned_cols=132 Identities=12% Similarity=0.189 Sum_probs=66.6
Q ss_pred ceeEEEeccccchh----hhhhhhhcCCCeEEEEeecCCCCCchhhHhcccc---ccc-ccccccCCCCC-----CCccc
Q 005959 515 MVRNVLDMNAHFGG----FNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGF---VGV-LHDWCEAFPTY-----PRTYD 581 (667)
Q Consensus 515 ~~R~vlDm~~~~g~----faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGl---ig~-~~~~c~~f~ty-----p~tyD 581 (667)
.-++|||+|||+|. +|+++.. +-.|.++=+-|.....--..+-.-|+ |-+ ..|..+.++.. ..+||
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~-~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPE-DGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 36789999998886 3344432 12344433333211100011122233 111 22333333221 25899
Q ss_pred cccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc---------C----H----HHHHHHHHHHh----hCCCe
Q 005959 582 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD---------T----A----RLIESARALTT----RLKWD 640 (667)
Q Consensus 582 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d---------~----~----~~~~~~~~~~~----~~~W~ 640 (667)
+|..+.-=..|. .++-++=|+|||||.+|+-+ . . .....++++.+ .=+|+
T Consensus 147 ~VfiDa~k~~y~---------~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~ 217 (234)
T PLN02781 147 FAFVDADKPNYV---------HFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVE 217 (234)
T ss_pred EEEECCCHHHHH---------HHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeE
Confidence 998754333332 56666779999999999621 1 0 12344444433 33455
Q ss_pred eEEeeeccCCCccEEEEEcc
Q 005959 641 ARVIEIESNSDERLLICQKP 660 (667)
Q Consensus 641 ~~~~~~~~~~~~~~li~~K~ 660 (667)
+.+... .++++|++|.
T Consensus 218 ~~~lp~----gdG~~i~~k~ 233 (234)
T PLN02781 218 ISQISI----GDGVTLCRRL 233 (234)
T ss_pred EEEEEe----CCccEEEEEe
Confidence 555432 3678888875
No 350
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=93.61 E-value=0.034 Score=56.86 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=57.4
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchh-hHhcccccccc--------------cccccCCCCC---C-C
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP-MILDRGFVGVL--------------HDWCEAFPTY---P-R 578 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~-~~~~RGlig~~--------------~~~c~~f~ty---p-~ 578 (667)
.|||.|||.|-.|.+|.+.+..|..+=++|. -+. ++-++|+.... +-+|.-+..+ + .
T Consensus 40 rvL~~gCG~G~da~~LA~~G~~V~avD~s~~----Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGHEVLGVELSEL----AVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCCeEEEEccCHH----HHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 8999999999999999986665555544443 121 23456653211 1122212111 1 2
Q ss_pred ccccccccCccccccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 579 TYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 579 tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
+||+|-...+|.+.. ...-..++-.|-++|+|||.+++
T Consensus 116 ~fd~v~D~~~~~~l~----~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALP----EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCC----HHHHHHHHHHHHHHcCCCCeEEE
Confidence 577777666665542 12234678899999999996443
No 351
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=93.59 E-value=0.11 Score=58.26 Aligned_cols=102 Identities=19% Similarity=0.184 Sum_probs=53.9
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh---cc-cccc----ccccccc-CCCCCCCcccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL---DR-GFVG----VLHDWCE-AFPTYPRTYDLVHAE 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~---~R-Glig----~~~~~c~-~f~typ~tyDl~H~~ 586 (667)
.+||||+||.||++.+|.+.- + .-.|+-.|-. ..+..+- +| |+-- +-.|... .+..-+.+||.|.++
T Consensus 240 ~~VLDlcag~G~kt~~la~~~-~--~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELA-P--QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHc-C--CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 489999999999999988631 1 0123333433 3333332 22 4310 1112211 110123689999854
Q ss_pred C------ccccccCC---CCCCC-------cchhheeccccccCCcEEEEE
Q 005959 587 G------LLSLESGH---RHRCS-------TLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 587 ~------~~~~~~~~---~~~c~-------~~~~l~E~dRiLRP~G~~i~~ 621 (667)
- ++.....- ...-. -..+|-++=|+|||||.+|++
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvys 367 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYA 367 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 22211000 00000 126888999999999999997
No 352
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=93.56 E-value=0.36 Score=52.78 Aligned_cols=104 Identities=15% Similarity=0.051 Sum_probs=70.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----C--------CCceEEeecccCC-CCCCCCcc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----G--------LPAMIGSFASKQL-PYPSLSFD 319 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----g--------l~~~~~~~da~~L-pfpd~sFD 319 (667)
..++||-+|.|.|...+.+.+. ....+|+-+|.++.|++.++.. . ..+.+...|+.++ .-..+.||
T Consensus 289 ~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 4578999999999999999876 2367899999999999988732 1 1223343343222 22345899
Q ss_pred EEEecccccccccCH-----HHHHHHHHhcccCCeEEEEEeCCC
Q 005959 320 MLHCARCGVDWDQKD-----GILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 320 lV~~s~~ll~~~~d~-----~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.|+.-.- -.-.+.. ..+..-+.|.|+++|.+++..-.+
T Consensus 368 ~vIVDl~-DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 368 VVIVDLP-DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred EEEEeCC-CCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCC
Confidence 9987532 1101111 246777889999999999976543
No 353
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=93.44 E-value=0.12 Score=55.33 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=62.7
Q ss_pred ceeEEEeccccchhhhhhhhhcC-CCeEEEEeecCCC-CCchhhHhc----ccccccccccccCCCCCC--Ccccccccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIG-TNHLPMILD----RGFVGVLHDWCEAFPTYP--RTYDLVHAE 586 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~-~~vwvmnv~p~~~-~~~l~~~~~----RGlig~~~~~c~~f~typ--~tyDl~H~~ 586 (667)
.-+||||+|||+|-+|=|.+..+ ++|. -+|- +-.+.++.| -|+--+.+.-+-.-++.| +.||+|=|+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~-----g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVAN 236 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVV-----GVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVAN 236 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEE-----EecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEeh
Confidence 46899999999998876555421 2222 2222 133333333 111101111111122233 489999884
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEcCHH-HHHHHHHHHhhCCCeeEEee
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTAR-LIESARALTTRLKWDARVIE 645 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~-~~~~~~~~~~~~~W~~~~~~ 645 (667)
=+=.... .+.=++-|.|+|||++|++.--+ ..+.+.+-..+=.|++..+.
T Consensus 237 ILA~vl~---------~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 237 ILAEVLV---------ELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred hhHHHHH---------HHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEE
Confidence 3212111 34456789999999999986321 23445555555567766554
No 354
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=93.30 E-value=0.067 Score=56.03 Aligned_cols=90 Identities=23% Similarity=0.473 Sum_probs=62.2
Q ss_pred ceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCCCchh-hHhcccc--cccccccccCCCCCCCccccccccCcccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGTNHLP-MILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~~~l~-~~~~RGl--ig~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
+..++||+|||-|+--+.|... .=.|.-++...... ---+||+ +.+. +|.+. +..||+|-|-.++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-----f~~v~aTE~S~~Mr~rL~~kg~~vl~~~-~w~~~----~~~fDvIscLNvL-- 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-----FKEVYATEASPPMRWRLSKKGFTVLDID-DWQQT----DFKFDVISCLNVL-- 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-----cceEEeecCCHHHHHHHHhCCCeEEehh-hhhcc----CCceEEEeehhhh--
Confidence 4678999999999998888531 12344444442222 2345886 4433 47643 4679999996665
Q ss_pred ccCCCCCCCcc-hhheeccccccCCcEEEEE
Q 005959 592 ESGHRHRCSTL-DIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 592 ~~~~~~~c~~~-~~l~E~dRiLRP~G~~i~~ 621 (667)
+||.-+ .+|-+|-+-|+|+|.+|+.
T Consensus 162 -----DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 162 -----DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred -----hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 578766 6778899999999999973
No 355
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=93.28 E-value=0.23 Score=50.32 Aligned_cols=41 Identities=29% Similarity=0.424 Sum_probs=32.1
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e 296 (667)
-.+.|||||.|.+...|+.. ++...+.|+++--..-+..++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~-fPdtLiLGmEIR~KVsdYVk~ 102 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPK-FPDTLILGMEIRDKVSDYVKE 102 (249)
T ss_pred ceEEeeccCccchhhhcccc-CccceeeeehhhHHHHHHHHH
Confidence 35899999999999999987 566778899887665554443
No 356
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=93.18 E-value=0.11 Score=54.38 Aligned_cols=95 Identities=18% Similarity=0.159 Sum_probs=60.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEE------EEeecCCC-CCchhhHhcccc-cccccc----c-c-----cCCCCCCC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWV------MNVVPTIG-TNHLPMILDRGF-VGVLHD----W-C-----EAFPTYPR 578 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwv------mnv~p~~~-~~~l~~~~~RGl-ig~~~~----~-c-----~~f~typ~ 578 (667)
=.||||.||+|--|=.+++. |=. -+|+-.|- +.+|.+...|-. -+..-+ | | .|||+ .
T Consensus 102 m~~lDvaGGTGDiaFril~~---v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd--~ 176 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRH---VKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDD--D 176 (296)
T ss_pred CeEEEecCCcchhHHHHHHh---hccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCC--C
Confidence 68999999999888777752 222 23333443 367776655542 111222 3 2 35665 9
Q ss_pred ccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 579 TYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 579 tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
+||+.-.+.-.-.++ .++..|-|+-|+|+|||-|.+=+
T Consensus 177 s~D~yTiafGIRN~t------h~~k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 177 SFDAYTIAFGIRNVT------HIQKALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred cceeEEEecceecCC------CHHHHHHHHHHhcCCCcEEEEEE
Confidence 999876544333322 36689999999999999988743
No 357
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=93.10 E-value=0.063 Score=58.09 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=61.3
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh----cccccc--c-ccccccCCCCCCCccccccccCcc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGFVG--V-LHDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~----~RGlig--~-~~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
.|||.+||.|+|...+...+. .|+=.|.. ..+..+- .-|+-. + ..|-. .++.-+.+||+|=++--|
T Consensus 185 ~vLDp~cGtG~~lieaa~~~~-----~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~-~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLMGA-----KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDAT-KLPLSSESVDAIATDPPY 258 (329)
T ss_pred EEEECCCCCCHHHHHHHHhCC-----eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchh-cCCcccCCCCEEEECCCC
Confidence 799999999999654433222 23333432 2222111 124322 1 12222 233223689999886443
Q ss_pred ccccCC-CC--CCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCC
Q 005959 590 SLESGH-RH--RCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKW 639 (667)
Q Consensus 590 ~~~~~~-~~--~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W 639 (667)
...... .+ ......+|-|+-|+|+|||++++--... .+++++++.--|
T Consensus 259 g~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--~~~~~~~~~~g~ 309 (329)
T TIGR01177 259 GRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--IDLESLAEDAFR 309 (329)
T ss_pred cCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--CCHHHHHhhcCc
Confidence 221100 01 1224588999999999999988753322 144456666666
No 358
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=93.06 E-value=0.09 Score=54.30 Aligned_cols=109 Identities=22% Similarity=0.334 Sum_probs=60.6
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc-------ccccc-ccccccCCCCCCCcccccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-------GFVGV-LHDWCEAFPTYPRTYDLVHAE 586 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R-------Glig~-~~~~c~~f~typ~tyDl~H~~ 586 (667)
=++|||+|||.|+|.-.|++. .+ =.|+-+|.. ++|.--+.. +..-+ +.+|-+-.+.++ ++|+..++
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~--ga--~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~-~~DvsfiS 150 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQK--GA--KEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFA-TFDVSFIS 150 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHc--CC--CEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCce-eeeEEEee
Confidence 358999999999999999873 21 123333433 344321211 22111 235555433322 45544432
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEE-------------------EcCH---HHHHHHHHHHhhCCCeeEEe
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII-------------------RDTA---RLIESARALTTRLKWDARVI 644 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~-------------------~d~~---~~~~~~~~~~~~~~W~~~~~ 644 (667)
.. .+|-.|.++|+| |.+|+ +|.. .+++++...+.++-|++.-.
T Consensus 151 ~~--------------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T TIGR00478 151 LI--------------SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKI 215 (228)
T ss_pred hH--------------hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeE
Confidence 21 245556666666 55553 4433 56778888888888886544
No 359
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=92.57 E-value=0.1 Score=58.84 Aligned_cols=103 Identities=19% Similarity=0.216 Sum_probs=56.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc---cccccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGVLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl---ig~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
.+|||||||.|+++.+|.+.-.+- ..|+-.|-. +.+..+-+ .|+ .=+-.|..+....++.+||+|=++--
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~--~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~P 329 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNT--GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAP 329 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCC
Confidence 579999999999998887621010 123333433 33433322 243 11224444333344578999865432
Q ss_pred cccccC---------CCCCCCc-------chhheeccccccCCcEEEEE
Q 005959 589 LSLESG---------HRHRCST-------LDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 589 ~~~~~~---------~~~~c~~-------~~~l~E~dRiLRP~G~~i~~ 621 (667)
.+.... ......+ ..+|-+.=|+|+|||.+|+.
T Consensus 330 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 330 CSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYS 378 (444)
T ss_pred CCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 111000 0000111 24788889999999999975
No 360
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=92.27 E-value=0.18 Score=43.81 Aligned_cols=94 Identities=22% Similarity=0.276 Sum_probs=54.8
Q ss_pred EEeccccchh--hhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc-------cccccccccc-CCCCCC-Ccccccccc
Q 005959 519 VLDMNAHFGG--FNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG-------FVGVLHDWCE-AFPTYP-RTYDLVHAE 586 (667)
Q Consensus 519 vlDm~~~~g~--faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG-------lig~~~~~c~-~f~typ-~tyDl~H~~ 586 (667)
++|+|||.|. +.+.+.. ....+.. .+.. ..+.....+. +-.+..+... .++.-. .+||++ +.
T Consensus 52 ~ld~~~g~g~~~~~~~~~~--~~~~~~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 125 (257)
T COG0500 52 VLDIGCGTGRLALLARLGG--RGAYVVG---VDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-IS 125 (257)
T ss_pred eEEecCCcCHHHHHHHhCC--CCceEEE---EeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence 9999999998 4555543 2223333 2322 2222222211 1233334433 133322 389999 76
Q ss_pred CccccccCCCCCCCcchhheeccccccCCcEEEEEcCH
Q 005959 587 GLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 624 (667)
Q Consensus 587 ~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 624 (667)
.....+. . ...++-|+-|+|+|+|.+++.+..
T Consensus 126 ~~~~~~~---~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 126 LLVLHLL---P---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eeehhcC---C---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 6555443 2 568999999999999999987543
No 361
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=91.82 E-value=0.28 Score=55.13 Aligned_cols=103 Identities=21% Similarity=0.273 Sum_probs=56.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh---cc-cc-c-ccccccccCCCCC-CCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL---DR-GF-V-GVLHDWCEAFPTY-PRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~---~R-Gl-i-g~~~~~c~~f~ty-p~tyDl~H~~~~ 588 (667)
..|||+|||.|+++.+|.+.... -.|+-.|-. ..+..+- +| |+ + =+.+|-.+....+ +.+||.|=++--
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~~---~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAPQ---AQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDAP 322 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcCC---CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECCC
Confidence 36999999999999998873221 123444443 3333332 22 32 1 1223433322222 368999985442
Q ss_pred cccc---cCC------CCCCC-------cchhheeccccccCCcEEEEEc
Q 005959 589 LSLE---SGH------RHRCS-------TLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 589 ~~~~---~~~------~~~c~-------~~~~l~E~dRiLRP~G~~i~~d 622 (667)
++.. ... ...-. ...+|-+.=++|+|||.+++..
T Consensus 323 cs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 323 CSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred CCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 2211 000 00000 1257888899999999999863
No 362
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=91.42 E-value=0.25 Score=51.85 Aligned_cols=101 Identities=21% Similarity=0.235 Sum_probs=53.0
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc---c-cc--cccc-cccccCCCCCCCccccccccCcc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD---R-GF--VGVL-HDWCEAFPTYPRTYDLVHAEGLL 589 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~---R-Gl--ig~~-~~~c~~f~typ~tyDl~H~~~~~ 589 (667)
+||||+||.|+++.+|.+.-.+- -.|+-.|-. .-+..+-+ | |+ |-++ +|- ..++.....||.|-++-=.
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~--g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~-~~~~~~~~~fD~Vl~D~Pc 150 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNE--GAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG-RVFGAAVPKFDAILLDAPC 150 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCC--CEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH-HHhhhhccCCCEEEEcCCC
Confidence 59999999999998776521000 024444544 33333322 2 43 1122 222 2233333469988754322
Q ss_pred cccc---CC------CCCCCc-------chhheeccccccCCcEEEEE
Q 005959 590 SLES---GH------RHRCST-------LDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 590 ~~~~---~~------~~~c~~-------~~~l~E~dRiLRP~G~~i~~ 621 (667)
|..- .. ...-.+ ..+|-++=++|||||++|++
T Consensus 151 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 151 SGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred CCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2110 00 000011 25888889999999999997
No 363
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.41 E-value=0.74 Score=50.25 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=68.1
Q ss_pred CCCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc
Q 005959 253 GVRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 253 ~~~~VLDIGCG-tG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
++.+|+=+|+| .|.++..+++.- ...|+++|.+++-.+.|++-|....+...+...+.--.+.||+|+..-
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv------ 237 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV------ 237 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC------
Confidence 34788888877 567888888741 267999999999999999988655543222222222123499998762
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 332 QKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
. ...+....+.||+||.+++....
T Consensus 238 ~--~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 G--PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred C--hhhHHHHHHHHhcCCEEEEECCC
Confidence 1 45778889999999999998765
No 364
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=91.19 E-value=0.42 Score=48.56 Aligned_cols=134 Identities=22% Similarity=0.352 Sum_probs=85.7
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-Cchh----hHhcccc----cccccc-----c--ccCCCCCCCccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP----MILDRGF----VGVLHD-----W--CEAFPTYPRTYD 581 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~----~~~~RGl----ig~~~~-----~--c~~f~typ~tyD 581 (667)
.||.+|+|+|--|+++.. ..|-+ ---|.|-. +.++ -+-+-|+ ..+.-| | ..+-+.++.+||
T Consensus 28 ~vLEiaSGtGqHa~~FA~-~lP~l--~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQ-ALPHL--TWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204)
T ss_pred eEEEEcCCccHHHHHHHH-HCCCC--EEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc
Confidence 799999999987777765 24432 35677765 3323 2345564 222222 2 222334678999
Q ss_pred cccccCccccccCCCCCCCcchhheeccccccCCcEEEEE------------------------cC---HHHHHHHHHHH
Q 005959 582 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR------------------------DT---ARLIESARALT 634 (667)
Q Consensus 582 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~------------------------d~---~~~~~~~~~~~ 634 (667)
.|-|..++.--. ....+-++-+.-|+|+|||.+++- |. ..-++.|.++|
T Consensus 105 ~i~~~N~lHI~p----~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA 180 (204)
T PF06080_consen 105 AIFCINMLHISP----WSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALA 180 (204)
T ss_pred eeeehhHHHhcC----HHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHH
Confidence 999988864321 112346899999999999999972 11 13367888999
Q ss_pred hhCCCeeEEeeeccCCCccEEEEEc
Q 005959 635 TRLKWDARVIEIESNSDERLLICQK 659 (667)
Q Consensus 635 ~~~~W~~~~~~~~~~~~~~~li~~K 659 (667)
.+-..+.... ++=-...++|||+|
T Consensus 181 ~~~GL~l~~~-~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 181 AAHGLELEED-IDMPANNLLLVFRK 204 (204)
T ss_pred HHCCCccCcc-cccCCCCeEEEEeC
Confidence 9877775433 11122588999997
No 365
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=90.47 E-value=1.7 Score=45.52 Aligned_cols=128 Identities=18% Similarity=0.237 Sum_probs=71.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH----cCCCceEEeecccCCCCCCCCccEEEeccccc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE----RGLPAMIGSFASKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e----rgl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+.+|+|||||.=-++....... ....++++|++..++++... .+.+..+...|...-+ +....|+.+..-+ +
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~~~~DlaLllK~-l 181 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PKEPADLALLLKT-L 181 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TTSEESEEEEET--H
T ss_pred CCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CCCCcchhhHHHH-H
Confidence 36899999999999988877553 34589999999999876543 3556666555544333 3457999988765 5
Q ss_pred ccccCH--HHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHH-hhhhhhhhhhhccceEE
Q 005959 329 DWDQKD--GILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQ-KRWNFVRDFVENLCWEL 387 (667)
Q Consensus 329 ~~~~d~--~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~-~~W~~ie~l~~~~~W~l 387 (667)
+..+.. ...+.-+..+=.| .+++|.|.... +. |+.-.. ..-..++.++....|..
T Consensus 182 p~le~q~~g~g~~ll~~~~~~--~~vVSfPtrSL-~g-R~~gm~~~y~~~fe~~~~~~~~~~ 239 (251)
T PF07091_consen 182 PCLERQRRGAGLELLDALRSP--HVVVSFPTRSL-GG-RNKGMEQTYSAWFEALAAERGWIV 239 (251)
T ss_dssp HHHHHHSTTHHHHHHHHSCES--EEEEEEES---------TTHHHCHHHHHHHHCCTTCEEE
T ss_pred HHHHHHhcchHHHHHHHhCCC--eEEEecccccc-cc-CccccccCHHHHHHHhcccCCcee
Confidence 544332 1223333333222 56666664432 21 222111 22345677787878874
No 366
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=90.30 E-value=0.38 Score=49.72 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=71.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC--CchhhHhcccc--cccc-cccccCCCCCC--CccccccccCcc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT--NHLPMILDRGF--VGVL-HDWCEAFPTYP--RTYDLVHAEGLL 589 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~--~~l~~~~~RGl--ig~~-~~~c~~f~typ--~tyDl~H~~~~~ 589 (667)
..+++||||.|.|-++|...+=.+-..-|=+...- .-+.-|-+.|| |-++ +|=-+-+..++ .+.|-|+- .|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i--~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI--NF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE--EC
Confidence 48999999999999999874323322232222221 34456677777 4444 22223333333 37887775 45
Q ss_pred -ccccCCCC--CCCc-chhheeccccccCCcEEEEE-cCHHHHHH-HHHHHhh
Q 005959 590 -SLESGHRH--RCST-LDIFTEIDRILRPEGWVIIR-DTARLIES-ARALTTR 636 (667)
Q Consensus 590 -~~~~~~~~--~c~~-~~~l~E~dRiLRP~G~~i~~-d~~~~~~~-~~~~~~~ 636 (667)
+.|...++ |--+ ...|-++-|+|+|||.+-+. |..+..+. +......
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~ 180 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVLEH 180 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHHhc
Confidence 44654444 3333 37788899999999999996 55555555 5554444
No 367
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=90.26 E-value=0.21 Score=54.19 Aligned_cols=90 Identities=16% Similarity=0.089 Sum_probs=47.0
Q ss_pred eEEEeccccchhhhhhhhhcCCC-eEEEEeecCCCC-CchhhHh----cccc---cccccccccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKS-VWVMNVVPTIGT-NHLPMIL----DRGF---VGVLHDWCEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~-vwvmnv~p~~~~-~~l~~~~----~RGl---ig~~~~~c~~f~typ~tyDl~H~~~ 587 (667)
..|||+|||.|.+++.|.+.-.. --|+. +|-. .-+..+- ..|+ .=+..|-.+..+. ...||+|.++.
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~Vvg---VDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~-~~~fD~Ii~~~ 157 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVS---VEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE-FAPYDVIFVTV 157 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEE---EECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc-cCCccEEEECC
Confidence 37999999999999998752111 01222 2222 2222221 2233 1112232222222 24699998743
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
-.. .+.-.+-|.|+|||.+++-.
T Consensus 158 g~~------------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 158 GVD------------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred chH------------HhHHHHHHhcCCCCEEEEEe
Confidence 221 12223557899999988743
No 368
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=90.17 E-value=0.35 Score=54.54 Aligned_cols=101 Identities=17% Similarity=0.162 Sum_probs=55.2
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cccc---ccccccccCCC-CCCCccccccccCc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV---GVLHDWCEAFP-TYPRTYDLVHAEGL 588 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGli---g~~~~~c~~f~-typ~tyDl~H~~~~ 588 (667)
+||||+||.||.+.+|.+.-.+- -.|+-.|-. .-+..+-+ .|+- -+.+|... ++ ..+.+||.|=++--
T Consensus 240 ~VLD~cagpGgkt~~la~~~~~~--g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~-l~~~~~~~fD~Vl~DaP 316 (431)
T PRK14903 240 RVLDTCAAPGGKTTAIAELMKDQ--GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAER-LTEYVQDTFDRILVDAP 316 (431)
T ss_pred EEEEeCCCccHHHHHHHHHcCCC--CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhh-hhhhhhccCCEEEECCC
Confidence 69999999999988877521110 134444554 44444332 2441 22334432 23 12467999876432
Q ss_pred cccccCCCCC----C-----Cc-------chhheeccccccCCcEEEEE
Q 005959 589 LSLESGHRHR----C-----ST-------LDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 589 ~~~~~~~~~~----c-----~~-------~~~l~E~dRiLRP~G~~i~~ 621 (667)
-|....-+.+ . .+ ..+|-+.=+.|+|||.++++
T Consensus 317 Csg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYs 365 (431)
T PRK14903 317 CTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYS 365 (431)
T ss_pred CCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2211100000 0 00 25677888999999999986
No 369
>PLN03075 nicotianamine synthase; Provisional
Probab=90.05 E-value=0.34 Score=51.99 Aligned_cols=136 Identities=12% Similarity=0.109 Sum_probs=72.8
Q ss_pred ceeEEEeccccchhhhhhhhhcC--CCeEEEEeecCCCC-Cchh---hHh--cccccc----cccccccCCCCCCCcccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGT-NHLP---MIL--DRGFVG----VLHDWCEAFPTYPRTYDL 582 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~--~~vwvmnv~p~~~~-~~l~---~~~--~RGlig----~~~~~c~~f~typ~tyDl 582 (667)
.-+.|+|+|||-|++.|.++... ...-+.| +|.. ..+. -.+ +.|+=. ..+|--+..+ -...||+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~g---iD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-~l~~FDl 198 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHN---FDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-SLKEYDV 198 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEE---EeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-ccCCcCE
Confidence 45889999999998866554310 1122222 2322 1111 111 234310 1122223221 1267999
Q ss_pred ccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH---HHHHHHH--HHHhhCCCeeEEeeeccCC-CccEEE
Q 005959 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA---RLIESAR--ALTTRLKWDARVIEIESNS-DERLLI 656 (667)
Q Consensus 583 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~---~~~~~~~--~~~~~~~W~~~~~~~~~~~-~~~~li 656 (667)
|-+. .+..+. +-.-..+|-.+=|.|||||++++|--. ..+-.+- ...+ .|+....-+-.++ -+-++|
T Consensus 199 VF~~-ALi~~d----k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~--gf~~~~~~~P~~~v~Nsvi~ 271 (296)
T PLN03075 199 VFLA-ALVGMD----KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR--GFEVLSVFHPTDEVINSVII 271 (296)
T ss_pred EEEe-cccccc----cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC--CeEEEEEECCCCCceeeEEE
Confidence 9998 544432 122246888899999999999999522 1111100 1111 7887666544443 467888
Q ss_pred EEccc
Q 005959 657 CQKPF 661 (667)
Q Consensus 657 ~~K~~ 661 (667)
.+|+-
T Consensus 272 ~r~~~ 276 (296)
T PLN03075 272 ARKPG 276 (296)
T ss_pred EEeec
Confidence 88864
No 370
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=89.93 E-value=0.47 Score=53.60 Aligned_cols=113 Identities=17% Similarity=0.131 Sum_probs=59.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh----cccc---cccccccccCCCCCCCcccccccc--
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF---VGVLHDWCEAFPTYPRTYDLVHAE-- 586 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~----~RGl---ig~~~~~c~~f~typ~tyDl~H~~-- 586 (667)
..|||+|||.|+++.+|.+.-.+- -.|+-.|-. .-+..+- ..|+ --+.+|.....+ +.+||.|=++
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~--~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~--~~~fD~Vl~D~P 327 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNR--GQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP--EEQPDAILLDAP 327 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCC--cEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc--CCCCCEEEEcCC
Confidence 469999999999887776410000 124444444 3333222 2343 122234333222 3679999743
Q ss_pred --Cc--ccc-----ccCCCCCCCc-------chhheeccccccCCcEEEEEc----CHHHHHHHHHHHh
Q 005959 587 --GL--LSL-----ESGHRHRCST-------LDIFTEIDRILRPEGWVIIRD----TARLIESARALTT 635 (667)
Q Consensus 587 --~~--~~~-----~~~~~~~c~~-------~~~l~E~dRiLRP~G~~i~~d----~~~~~~~~~~~~~ 635 (667)
+. +.. |.. ....+ ..+|-++=|+|||||.+++.. ..+.-+.|+.+++
T Consensus 328 csg~g~~~r~p~~~~~~--~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~ 394 (445)
T PRK14904 328 CTGTGVLGRRAELRWKL--TPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQ 394 (445)
T ss_pred CCCcchhhcCcchhhcC--CHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHH
Confidence 22 110 110 01111 157889999999999999974 2233344455544
No 371
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=89.76 E-value=1.5 Score=48.90 Aligned_cols=111 Identities=22% Similarity=0.330 Sum_probs=73.8
Q ss_pred cccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH----HHHcCCCceE-EeecccCCC---CCCCCcc
Q 005959 248 NFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMI-GSFASKQLP---YPSLSFD 319 (667)
Q Consensus 248 ~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~----A~ergl~~~~-~~~da~~Lp---fpd~sFD 319 (667)
.+.|.++-+|||+-+.+|.=|.+++..--....|.+.|.+..-+.. +.+.|+...+ ...|...+| |+. +||
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fD 314 (460)
T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFD 314 (460)
T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccc
Confidence 3446677899999999998777776542234568899988776644 3444665443 455655554 555 899
Q ss_pred EEE----eccccccc-------c----------cCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 320 MLH----CARCGVDW-------D----------QKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 320 lV~----~s~~ll~~-------~----------~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
-|. |+...+.. . .-..++|......+++||+|+.++-...
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 997 44311111 0 1123578888999999999999987554
No 372
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=89.54 E-value=0.7 Score=47.07 Aligned_cols=104 Identities=10% Similarity=-0.047 Sum_probs=53.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhc---CCceeEEEEecCCHHHHHH-HHHc---CCCceEEeecccCCCC--------CCCC
Q 005959 253 GVRTILDIGCGYGSFGAHLFSK---ELLTMCIANYEASGSQVQL-TLER---GLPAMIGSFASKQLPY--------PSLS 317 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~---g~~~~sV~gvD~S~~ml~~-A~er---gl~~~~~~~da~~Lpf--------pd~s 317 (667)
+++.|+|+|.-.|..+..+++. -.....|.++|+....... +.+. ...+.+.+++...... ....
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 3589999999998877766542 1134679999995433322 2222 1355666666543321 1123
Q ss_pred ccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 318 FDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 318 FDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
-.+|+-- + .|..++..+.|+....++++|+|+++.|...
T Consensus 112 ~vlVilD-s-~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 112 PVLVILD-S-SHTHEHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp SEEEEES-S-----SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred ceEEEEC-C-CccHHHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 3344433 3 5555677788888999999999999977643
No 373
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=88.93 E-value=2 Score=41.22 Aligned_cols=81 Identities=21% Similarity=0.186 Sum_probs=50.5
Q ss_pred EEEEecCCHHHHHHHHHc----CC--CceEEeecccCCC-C-CCCCccEEEeccccccccc-----CH---HHHHHHHHh
Q 005959 280 CIANYEASGSQVQLTLER----GL--PAMIGSFASKQLP-Y-PSLSFDMLHCARCGVDWDQ-----KD---GILLLEVDR 343 (667)
Q Consensus 280 sV~gvD~S~~ml~~A~er----gl--~~~~~~~da~~Lp-f-pd~sFDlV~~s~~ll~~~~-----d~---~~~L~Ei~R 343 (667)
.|.+.|+-+.+++.++++ +. ++.+...+-+++. + +.+.+|+|+.+...+.-.+ .+ -.+++.+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 378999999999877655 32 3455555544544 2 3358999999866444221 11 268999999
Q ss_pred cccCCeEEEEEeCCCCh
Q 005959 344 VLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 344 vLKPGG~Lvis~p~~~~ 360 (667)
+|+|||.+++.......
T Consensus 81 lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 81 LLKPGGIITIVVYPGHP 97 (140)
T ss_dssp HEEEEEEEEEEE--STC
T ss_pred hhccCCEEEEEEeCCCC
Confidence 99999999999875443
No 374
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=88.92 E-value=0.3 Score=50.69 Aligned_cols=99 Identities=16% Similarity=0.245 Sum_probs=64.3
Q ss_pred EEEeccccchhhhhhhhhcCCC--eEEEEeecCCCCCchhhHh-------cccccccccccccCC---CCCCCccccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKS--VWVMNVVPTIGTNHLPMIL-------DRGFVGVLHDWCEAF---PTYPRTYDLVHA 585 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~--vwvmnv~p~~~~~~l~~~~-------~RGlig~~~~~c~~f---~typ~tyDl~H~ 585 (667)
++|.+|||+|.--=-|++.+.+ +-||.. +. +++-+-+.- .|. -...+|.+.+= |.-+.+.|++-+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~ac-Df-sp~Ai~~vk~~~~~~e~~~-~afv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYAC-DF-SPRAIELVKKSSGYDESRV-EAFVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEc-CC-ChHHHHHHHhccccchhhh-cccceeccchhccCCCCcCccceEEE
Confidence 8999999999876666654433 444432 00 112222111 222 23344444332 222389999999
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
-.++|... .-.|...+-.+-|+|+|||.+++||=
T Consensus 151 IFvLSAi~----pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 151 IFVLSAIH----PEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred EEEEeccC----hHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 99999986 35577899999999999999999963
No 375
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=88.81 E-value=0.87 Score=51.98 Aligned_cols=132 Identities=15% Similarity=0.166 Sum_probs=86.2
Q ss_pred ccccccccccchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhh---cCCceeEEEEecCCHHHHHHHH
Q 005959 219 SFRSASLIFDGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFS---KELLTMCIANYEASGSQVQLTL 295 (667)
Q Consensus 219 ~F~~~~~~yd~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~---~g~~~~sV~gvD~S~~ml~~A~ 295 (667)
.|.++.--| ..|.+.+.+.|..... .-.......|+-+|+|.|-+.....+ .-...+.+++++-+++++-..+
T Consensus 337 tFEkD~VKY---~~Yq~Ai~~AL~Drvp-d~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~ 412 (649)
T KOG0822|consen 337 TFEKDPVKY---DQYQQAILKALLDRVP-DESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQ 412 (649)
T ss_pred hhhccchHH---HHHHHHHHHHHHhhCc-ccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhh
Confidence 555554444 4455566555543321 01111256788999999987654433 2234678999999998876555
Q ss_pred HcC-----CCceEEeecccCCCCCCCCccEEEecccccccccCH--HHHHHHHHhcccCCeEEEEEe
Q 005959 296 ERG-----LPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKD--GILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 296 erg-----l~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~--~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
.++ -.+.++..|+..++-|..+.|++++... =.+.++. ...|.-+-+.|||+|+.+=+.
T Consensus 413 ~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELL-GSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 413 NRNFECWDNRVTIISSDMRKWNAPREQADIIVSELL-GSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred hhchhhhcCeeEEEeccccccCCchhhccchHHHhh-ccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 443 3466777899999866689999998633 3333333 579999999999999877443
No 376
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=88.68 E-value=0.53 Score=53.55 Aligned_cols=69 Identities=26% Similarity=0.343 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CC-CceEEe
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GL-PAMIGS 305 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl-~~~~~~ 305 (667)
+-++..+.+.+.+..+ ..+||+=||||.++..+++. +..|.|+++++..+..|+.. |+ ++.|.+
T Consensus 369 evLys~i~e~~~l~~~--------k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~ 437 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPAD--------KTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISNATFIV 437 (534)
T ss_pred HHHHHHHHHHhCCCCC--------cEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccceeeee
Confidence 3344455555554433 78999999999999999876 56799999999999887654 33 445666
Q ss_pred ecccC
Q 005959 306 FASKQ 310 (667)
Q Consensus 306 ~da~~ 310 (667)
+-+++
T Consensus 438 gqaE~ 442 (534)
T KOG2187|consen 438 GQAED 442 (534)
T ss_pred cchhh
Confidence 63333
No 377
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=88.67 E-value=0.21 Score=48.28 Aligned_cols=47 Identities=26% Similarity=0.251 Sum_probs=35.2
Q ss_pred ccCCCCCCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc
Q 005959 570 CEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD 622 (667)
Q Consensus 570 c~~f~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d 622 (667)
++.+|.-+.+||+|=+..++..+. +....|-||-|+|+|||.+++-|
T Consensus 35 ~~~lp~~~~~fD~v~~~~~l~~~~------d~~~~l~ei~rvLkpGG~l~i~d 81 (160)
T PLN02232 35 AIDLPFDDCEFDAVTMGYGLRNVV------DRLRAMKEMYRVLKPGSRVSILD 81 (160)
T ss_pred hhhCCCCCCCeeEEEecchhhcCC------CHHHHHHHHHHHcCcCeEEEEEE
Confidence 344554347999998876665543 33478999999999999999865
No 378
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=88.57 E-value=2.4 Score=46.56 Aligned_cols=101 Identities=16% Similarity=0.078 Sum_probs=65.5
Q ss_pred CCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccC-----C-CC-CCCCccEEEecc
Q 005959 254 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-----L-PY-PSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~-----L-pf-pd~sFDlV~~s~ 325 (667)
..+||.+|||. |..+..+++.. ....+++++.++++++.+++.+ ...+....... + .+ ....+|+|+-.-
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~-g~~~vi~~~~~~~~~~~~~~~~-~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~v 262 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLL-GAERVIAIDRVPERLEMARSHL-GAETINFEEVDDVVEALRELTGGRGPDVCIDAV 262 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcC-CcEEEcCCcchHHHHHHHHHcCCCCCCEEEECC
Confidence 47899999987 88888888762 1234888999999999998873 12222111110 1 12 233699998752
Q ss_pred cc--------------cccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 326 CG--------------VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 326 ~l--------------l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.. ++-..+....+.++.+.|+|+|.+++...
T Consensus 263 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 263 GMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 10 00112335688999999999999998754
No 379
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=88.53 E-value=0.85 Score=45.68 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=67.4
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC----CchhhHh-cccccc----cccccccCCCCCCCccccccccCc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT----NHLPMIL-DRGFVG----VLHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~----~~l~~~~-~RGlig----~~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
+|||.|||-|.+--.|.+..-+- -++=+|=. ...+-|. .+|+-- .-.|--.| ...+.-||+||--+-
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~---~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQS---KLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGT 145 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCC---CccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCc
Confidence 89999999999998888632111 01112211 1122233 345421 11122222 233477999999888
Q ss_pred cccccC--CCCCCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCC
Q 005959 589 LSLESG--HRHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLK 638 (667)
Q Consensus 589 ~~~~~~--~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~ 638 (667)
|+...- ....-....++==++++|+|||.|+|..=.-+.+++.+....-.
T Consensus 146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFN 197 (227)
T ss_pred eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCC
Confidence 877541 00112223455568899999999999877666666665544443
No 380
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=88.21 E-value=0.32 Score=51.15 Aligned_cols=101 Identities=16% Similarity=0.202 Sum_probs=52.1
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc-----c-c----cccc-cccccCCCCCCCccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR-----G-F----VGVL-HDWCEAFPTYPRTYDLV 583 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R-----G-l----ig~~-~~~c~~f~typ~tyDl~ 583 (667)
-++||++|||.|+++..++.. .++ .+|+-++-. +.+..+-+. | + +-+. .|-.+-....+++||+|
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~-~~~--~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKH-KSV--EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhC-CCc--ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 458999999999999888762 222 223333322 222222110 0 0 1111 12111112335789999
Q ss_pred cccCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 584 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 584 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
=.+... .... ...--....+-.+-|+|+|||.+++.
T Consensus 150 i~D~~~-~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 150 IVDSTD-PVGP-AETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEeCCC-CCCc-ccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 765432 1110 00011224455778999999999986
No 381
>PRK01581 speE spermidine synthase; Validated
Probab=88.15 E-value=0.8 Score=50.55 Aligned_cols=105 Identities=16% Similarity=0.122 Sum_probs=55.5
Q ss_pred ceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc--------cc-c-----cccccccccCCCCCCCc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD--------RG-F-----VGVLHDWCEAFPTYPRT 579 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~--------RG-l-----ig~~~~~c~~f~typ~t 579 (667)
.-++||++|||.|+.+..+++. .++- +|+-++-. .-+.++-+ +| + --++.|-.+-...-++.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~-~~v~--~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKY-ETVL--HVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhc-CCCC--eEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 3579999999999998888862 2222 23333322 22322222 11 1 00122222212222467
Q ss_pred cccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 580 YDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 580 yDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
||+|=++- .........+---...+-.+-|.|+|||.++.+..
T Consensus 227 YDVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 227 YDVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred ccEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99998862 22211000011112466788999999999998754
No 382
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=88.11 E-value=1.7 Score=46.08 Aligned_cols=138 Identities=17% Similarity=0.224 Sum_probs=76.7
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc-------ccccccccc--cccCCCCCC---Ccccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD-------RGFVGVLHD--WCEAFPTYP---RTYDLVH 584 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~-------RGlig~~~~--~c~~f~typ---~tyDl~H 584 (667)
.++|+|||.|.-+-+|+. +.+ ---|..+|-. .-+.++-| -|-|++.|. --+.|-+|| .+||++=
T Consensus 151 ~ildlgtGSGaIslsll~-~L~--~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLH-GLP--QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred eEEEecCCccHHHHHHHh-cCC--CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 799999999999999986 233 1112222322 33333333 466888876 445566666 7899887
Q ss_pred ccCcc--cccc----------------CCCCCCC--cchhheeccccccCCcEEEEE-----cCHHHHHHHHHHHhhCC-
Q 005959 585 AEGLL--SLES----------------GHRHRCS--TLDIFTEIDRILRPEGWVIIR-----DTARLIESARALTTRLK- 638 (667)
Q Consensus 585 ~~~~~--~~~~----------------~~~~~c~--~~~~l~E~dRiLRP~G~~i~~-----d~~~~~~~~~~~~~~~~- 638 (667)
++-=. +.-. .++..|. +..+..=.-|.|+|||++++. +....+..+.....--+
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~d~~ 307 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDSN 307 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchhhcc
Confidence 76432 2110 0001111 114445567999999999985 33445555444333333
Q ss_pred CeeEEeeeccCCCccEEEEEc
Q 005959 639 WDARVIEIESNSDERLLICQK 659 (667)
Q Consensus 639 W~~~~~~~~~~~~~~~li~~K 659 (667)
|.+.+. .+-...+++++..+
T Consensus 308 ~~~~v~-~Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 308 GKAAVV-SDFAGRPRFVIIHR 327 (328)
T ss_pred chhhee-ecccCCcceEEEEe
Confidence 555544 23334566666543
No 383
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=87.66 E-value=2 Score=46.25 Aligned_cols=96 Identities=19% Similarity=0.190 Sum_probs=48.2
Q ss_pred chhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CCC--c
Q 005959 229 GVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLP--A 301 (667)
Q Consensus 229 ~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er-----gl~--~ 301 (667)
....|+..+++++...... ....-++||||+|....=..|..+- ...+++|.|+++..++.|++. ++. +
T Consensus 81 ~R~nYi~~i~DlL~~~~~~---~~~~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I 156 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPG---IPEKVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRI 156 (299)
T ss_dssp HHHHHHHHHHHHHT--TCG---CS---EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTE
T ss_pred hhHHHHHHHHHHhhccccc---cccceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccce
Confidence 3468888888888754430 1124689999999874433333221 246799999999999988743 232 2
Q ss_pred eEEeec-c----cCCCCCCCCccEEEeccccc
Q 005959 302 MIGSFA-S----KQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 302 ~~~~~d-a----~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+.... . ..+..+++.||+.+|+--++
T Consensus 157 ~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy 188 (299)
T PF05971_consen 157 ELRKQKNPDNIFDGIIQPNERFDFTMCNPPFY 188 (299)
T ss_dssp EEEE--ST-SSTTTSTT--S-EEEEEE-----
T ss_pred EEEEcCCccccchhhhcccceeeEEecCCccc
Confidence 222111 1 11223346899999996633
No 384
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=87.60 E-value=4.9 Score=42.15 Aligned_cols=102 Identities=13% Similarity=0.197 Sum_probs=60.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHH--HHHHHc--------CCCceEEeec---ccCCCCCCCC-cc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV--QLTLER--------GLPAMIGSFA---SKQLPYPSLS-FD 319 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml--~~A~er--------gl~~~~~~~d---a~~Lpfpd~s-FD 319 (667)
..+||++|+|+|..+..++... ...+.-.|...... +..... |..+.+..++ .....+-... ||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL--GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh--cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 4679999999998777777642 23455556654332 222111 1122222111 1111111122 99
Q ss_pred EEEecccccccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 320 MLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 320 lV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
+|+++.|.++ ....+.++.-+...|-.+|.+++..+..
T Consensus 165 lilasDvvy~-~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 165 LILASDVVYE-EESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEEEeeeeec-CCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 9999999544 4556778889999999999777776643
No 385
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=87.56 E-value=0.36 Score=47.26 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=34.5
Q ss_pred CCCccEEEecccccccc----c---CH---HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 315 SLSFDMLHCARCGVDWD----Q---KD---GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 315 d~sFDlV~~s~~ll~~~----~---d~---~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
.++||.+.|..++.|.. - |+ .+++.++.++|||||.|+++.|...
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 36899998887654532 1 11 3789999999999999999999764
No 386
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=87.51 E-value=0.84 Score=51.42 Aligned_cols=117 Identities=16% Similarity=0.232 Sum_probs=59.7
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cccc--c-cccccccCC---CCCCCcccccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV--G-VLHDWCEAF---PTYPRTYDLVHAE 586 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGli--g-~~~~~c~~f---~typ~tyDl~H~~ 586 (667)
.||||+||.|+++.+|.+.-.+- -.|+-.|-. .-+..+-+ -|+- - +-.|-.... +..+.+||.|=++
T Consensus 255 ~VLDl~ag~G~kt~~la~~~~~~--g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 255 VILDACAAPGGKTTHIAELMGDQ--GEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred EEEEeCCCCchhHHHHHHHhCCC--ceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEEEe
Confidence 69999999999998887621110 023444443 33333322 2331 1 112221111 1223689988753
Q ss_pred ----Ccccccc--CC---CCCCC-------cchhheeccccccCCcEEEEEc----CHHHHHHHHHHHhh
Q 005959 587 ----GLLSLES--GH---RHRCS-------TLDIFTEIDRILRPEGWVIIRD----TARLIESARALTTR 636 (667)
Q Consensus 587 ----~~~~~~~--~~---~~~c~-------~~~~l~E~dRiLRP~G~~i~~d----~~~~~~~~~~~~~~ 636 (667)
+.-..-+ .. ..... -..+|-++=|+|||||.+|+.. ..+..+.|+.+++.
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHh
Confidence 2211100 00 00011 1367889999999999999863 22444555555544
No 387
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=87.49 E-value=5.4 Score=40.73 Aligned_cols=99 Identities=18% Similarity=0.118 Sum_probs=65.3
Q ss_pred cccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHH----HHHHHcCCCceEEeecccCCCC----CCCCccEE
Q 005959 250 ILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQV----QLTLERGLPAMIGSFASKQLPY----PSLSFDML 321 (667)
Q Consensus 250 ~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml----~~A~ergl~~~~~~~da~~Lpf----pd~sFDlV 321 (667)
+-..+.+||=+|+.+|....+++.-- ....+.+++.|+.+. ..|.+|. ++.-...|+ +.|. -=+..|+|
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv-~~G~iYaVEfs~R~~reLl~~a~~R~-Ni~PIL~DA-~~P~~Y~~~Ve~VDvi 149 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIV-GEGRIYAVEFSPRPMRELLDVAEKRP-NIIPILEDA-RKPEKYRHLVEKVDVI 149 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhcc-CCCcEEEEEecchhHHHHHHHHHhCC-Cceeeeccc-CCcHHhhhhcccccEE
Confidence 33456899999999999999888752 234589999997664 4555553 221122233 2331 12358999
Q ss_pred EecccccccccCH-HHHHHHHHhcccCCeEEEEEe
Q 005959 322 HCARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 322 ~~s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
++--+ .++. +.+..++...||+||+++++.
T Consensus 150 y~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 150 YQDVA----QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred EEecC----CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 87633 2333 457888999999999888764
No 388
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.98 E-value=2.9 Score=44.95 Aligned_cols=94 Identities=14% Similarity=0.080 Sum_probs=60.7
Q ss_pred CCEEEEeCCC-CchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEe--ecccCCCCCCCCccEEEecccccc
Q 005959 254 VRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGS--FASKQLPYPSLSFDMLHCARCGVD 329 (667)
Q Consensus 254 ~~~VLDIGCG-tG~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~--~da~~Lpfpd~sFDlV~~s~~ll~ 329 (667)
..+||=+||| .|.++..+++. |. ..|+++|.+++.++.+++.|....+.. .+...+....+.||+|+-.-.
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~--~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGA--AEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--cEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 4788889986 36666666665 32 247788999999999988775433211 011111111235899886522
Q ss_pred cccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 330 WDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 330 ~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+....+.|++||.+++...
T Consensus 245 ----~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 ----HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred ----CHHHHHHHHHHhhcCCEEEEEcc
Confidence 12467788899999999998764
No 389
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=86.60 E-value=0.82 Score=49.48 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=52.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc-c------cccccc-ccCCCCCCCccccccccC
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-V------GVLHDW-CEAFPTYPRTYDLVHAEG 587 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl-i------g~~~~~-c~~f~typ~tyDl~H~~~ 587 (667)
.+|||+|||.|.++..|.+.+. +|+-.|-. +-|.++-+|.- . +.-.++ +..+...+.+||+|=|..
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~-----~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGA-----IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCC-----EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 3799999999999999987432 45555554 55555555421 0 011111 112233358899999988
Q ss_pred ccccccCCCCCCCcchhheeccccccCCcEEE
Q 005959 588 LLSLESGHRHRCSTLDIFTEIDRILRPEGWVI 619 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i 619 (667)
++.++. . -.+..++-.+-++ .+||.+|
T Consensus 221 vL~H~p---~-~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 221 VLIHYP---Q-DKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EEEecC---H-HHHHHHHHHHHhh-cCCEEEE
Confidence 876654 1 1122344444443 4555544
No 390
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=86.53 E-value=3.9 Score=43.02 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=61.7
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC-----CCCCCCccEEEecccc
Q 005959 254 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCG-tG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-----pfpd~sFDlV~~s~~l 327 (667)
..+||..|+| .|..+..+++.. ...++.++.++...+.+++.+....+.. ..... ....+.+|+|+....
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~D~vid~~g- 241 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKELGADEVLNS-LDDSPKDKKAAGLGGGFDVIFDFVG- 241 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhCCCEEEcC-CCcCHHHHHHHhcCCCceEEEECCC-
Confidence 4688888876 477777777752 2347888999999988877665332221 10000 123457999885422
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+.++.+.|+++|.++....
T Consensus 242 ------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 242 ------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEECC
Confidence 13578889999999999998654
No 391
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=86.42 E-value=0.37 Score=44.25 Aligned_cols=37 Identities=19% Similarity=0.608 Sum_probs=27.5
Q ss_pred CccEEEecccccccc-----cCH-HHHHHHHHhcccCCeEEEEE
Q 005959 317 SFDMLHCARCGVDWD-----QKD-GILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 317 sFDlV~~s~~ll~~~-----~d~-~~~L~Ei~RvLKPGG~Lvis 354 (667)
.||+|.|..+ .-|+ ++. ..+++.+++.|+|||.|++.
T Consensus 1 ~yDvilclSV-tkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSV-TKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEe-eEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 4899999865 3332 222 46999999999999999985
No 392
>PRK00811 spermidine synthase; Provisional
Probab=85.95 E-value=0.51 Score=50.16 Aligned_cols=102 Identities=16% Similarity=0.172 Sum_probs=53.6
Q ss_pred ceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc------cc-----cc-cccccccCCCCCCCccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR------GF-----VG-VLHDWCEAFPTYPRTYD 581 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R------Gl-----ig-~~~~~c~~f~typ~tyD 581 (667)
.-++|||+|||.|+++..+++. .++- +|+-++-. ..+.++-+. |+ +- +..|-.+-..+-+.+||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~--~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH-PSVE--KITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC-CCCC--EEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc
Confidence 3578999999999999998862 2332 23333322 222222110 11 00 11121111222247899
Q ss_pred cccccCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 582 LVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 582 l~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
+|=++. +..+.. ...---...+-++-|+|+|||.+++.
T Consensus 153 vIi~D~-~dp~~~-~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 153 VIIVDS-TDPVGP-AEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEEECC-CCCCCc-hhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 997642 222210 00000124566889999999999986
No 393
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=85.95 E-value=1.2 Score=45.84 Aligned_cols=140 Identities=17% Similarity=0.167 Sum_probs=92.6
Q ss_pred CCCceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcccc-----cccccccccCCCCCCCccccccc
Q 005959 512 PYNMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRGF-----VGVLHDWCEAFPTYPRTYDLVHA 585 (667)
Q Consensus 512 ~~~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RGl-----ig~~~~~c~~f~typ~tyDl~H~ 585 (667)
+....|+|-|+|||.|---+.|.. .-|.=+ |.=.|+. +-|--+.+|+. .|=+++||-.-+ .||+.+
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~-RwP~A~--i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~-----~dllfa 98 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLAR-RWPDAV--ITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQP-----TDLLFA 98 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHH-hCCCCe--EeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCc-----cchhhh
Confidence 446799999999999988777775 234322 2334544 66777777874 688999998766 599999
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEE--cCH--HHHHHHHHHHhhCCCeeEEeeec----c---------
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR--DTA--RLIESARALTTRLKWDARVIEIE----S--------- 648 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~--d~~--~~~~~~~~~~~~~~W~~~~~~~~----~--------- 648 (667)
+-+|.-... +--.+..++ --|+|||++-++ |+. ..-.-|++.|++.-|.....+.- .
T Consensus 99 NAvlqWlpd--H~~ll~rL~----~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~ 172 (257)
T COG4106 99 NAVLQWLPD--HPELLPRLV----SQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYE 172 (257)
T ss_pred hhhhhhccc--cHHHHHHHH----HhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHH
Confidence 999865542 222232333 358999999997 322 23445677777777776554311 0
Q ss_pred ---CCCccEEEEEccccccc
Q 005959 649 ---NSDERLLICQKPFFKRQ 665 (667)
Q Consensus 649 ---~~~~~~li~~K~~~~~~ 665 (667)
.-..+|=||.+.|-++-
T Consensus 173 lLa~~~~rvDiW~T~Y~h~l 192 (257)
T COG4106 173 LLAPLACRVDIWHTTYYHQL 192 (257)
T ss_pred HhCcccceeeeeeeeccccC
Confidence 11467888888886653
No 394
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.95 E-value=4.5 Score=46.70 Aligned_cols=100 Identities=13% Similarity=0.178 Sum_probs=64.9
Q ss_pred CCCEEEEeCCCC-chHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeeccc---------CCC---------
Q 005959 253 GVRTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK---------QLP--------- 312 (667)
Q Consensus 253 ~~~~VLDIGCGt-G~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~---------~Lp--------- 312 (667)
.+.+|+=+|||. |..+...++. | ..|+++|.+++-++.+++.|........... .+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG---A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~ 240 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG---AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA 240 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence 468999999996 5666666654 4 3589999999999999887654221111000 010
Q ss_pred -CCC--CCccEEEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 313 -YPS--LSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 313 -fpd--~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+.+ +.+|+|+..-. ..-.+.+..+.++..+.+||||.++....
T Consensus 241 ~~~~~~~gaDVVIetag-~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 241 LFAEQAKEVDIIITTAL-IPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHhccCCCCEEEECCC-CCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 111 36999998743 22222333345999999999999887654
No 395
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=85.48 E-value=0.68 Score=45.52 Aligned_cols=96 Identities=25% Similarity=0.336 Sum_probs=52.4
Q ss_pred ceeEEEeccccch--hhhhhhhhcCCCeEEEEeecCCCCCchh---hHhcc------c-ccccccccccCC--CC-CCCc
Q 005959 515 MVRNVLDMNAHFG--GFNSALLEKGKSVWVMNVVPTIGTNHLP---MILDR------G-FVGVLHDWCEAF--PT-YPRT 579 (667)
Q Consensus 515 ~~R~vlDm~~~~g--~faa~l~~~~~~vwvmnv~p~~~~~~l~---~~~~R------G-lig~~~~~c~~f--~t-yp~t 579 (667)
.-++||++|||.| |.+++.+. -...|+-+|.+..++ .-.++ + +--.-.+|.++. .. -++.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~-----~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~ 119 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLF-----GAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHS 119 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT------T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SS
T ss_pred CCceEEEECCccchhHHHHHhcc-----CCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCccccccccccc
Confidence 4579999999888 77777761 112444455443332 22222 2 234556898754 11 1368
Q ss_pred cccccccCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 580 YDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 580 yDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
||+|-|+.|+-... ..+.++-=++++|.|+|-+++.
T Consensus 120 ~D~IlasDv~Y~~~------~~~~L~~tl~~ll~~~~~vl~~ 155 (173)
T PF10294_consen 120 FDVILASDVLYDEE------LFEPLVRTLKRLLKPNGKVLLA 155 (173)
T ss_dssp BSEEEEES--S-GG------GHHHHHHHHHHHBTT-TTEEEE
T ss_pred CCEEEEecccchHH------HHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999865432 2345666689999999998874
No 396
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=85.41 E-value=1.9 Score=47.07 Aligned_cols=106 Identities=19% Similarity=0.172 Sum_probs=55.2
Q ss_pred CCCEEEEeCCCCchHHHHHhhc---------------CCceeEEEEecCCHH---HH----HHH---HHcCCCceEEe--
Q 005959 253 GVRTILDIGCGYGSFGAHLFSK---------------ELLTMCIANYEASGS---QV----QLT---LERGLPAMIGS-- 305 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~---------------g~~~~sV~gvD~S~~---ml----~~A---~ergl~~~~~~-- 305 (667)
+.-+|+|+||..|..+..+... ..+...|.-.|.-.+ .+ ... ... .+..+..
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~-~~~~f~~gv 94 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK-FRNYFVSGV 94 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH-TTSEEEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC-CceEEEEec
Confidence 4568999999999988776543 112345666665322 11 000 011 1223322
Q ss_pred -ecccCCCCCCCCccEEEecccccccccCH------------------------H---------------HHHHHHHhcc
Q 005959 306 -FASKQLPYPSLSFDMLHCARCGVDWDQKD------------------------G---------------ILLLEVDRVL 345 (667)
Q Consensus 306 -~da~~Lpfpd~sFDlV~~s~~ll~~~~d~------------------------~---------------~~L~Ei~RvL 345 (667)
+....--||++|.|+++++.+ +||.... . .+|+-=.+-|
T Consensus 95 pgSFy~rLfP~~Svh~~~Ss~a-lHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 95 PGSFYGRLFPSNSVHFGHSSYA-LHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp ES-TTS--S-TT-EEEEEEES--TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CchhhhccCCCCceEEEEEech-hhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 233333489999999999987 8875211 0 1233344568
Q ss_pred cCCeEEEEEeCCCCh
Q 005959 346 KPGGYFVWTSPLTNP 360 (667)
Q Consensus 346 KPGG~Lvis~p~~~~ 360 (667)
+|||++++..++...
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 899999999876543
No 397
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=84.62 E-value=0.42 Score=50.63 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=58.5
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCce------------EEeeccc---CCC--CCC
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAM------------IGSFASK---QLP--YPS 315 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~------------~~~~da~---~Lp--fpd 315 (667)
...+|||+|||.|.-+......+. .++...|.+...++.-.-..+.+. +...... .+- +..
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~--~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA--VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc--ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 468999999999998888877752 567778888776632111110000 0000000 111 111
Q ss_pred -CCccEEEecccccccccCHHHH-HHHHHhcccCCeEEEEEe
Q 005959 316 -LSFDMLHCARCGVDWDQKDGIL-LLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 316 -~sFDlV~~s~~ll~~~~d~~~~-L~Ei~RvLKPGG~Lvis~ 355 (667)
..||+|.++...+. .+....+ .......++++|.++++.
T Consensus 194 ~~~ydlIlsSetiy~-~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 194 RTHYDLILSSETIYS-IDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ccchhhhhhhhhhhC-cchhhhhHhhhhhhcCCccchhhhhh
Confidence 27899988877444 2333333 667778888899887753
No 398
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=84.59 E-value=1.9 Score=43.09 Aligned_cols=136 Identities=20% Similarity=0.315 Sum_probs=79.9
Q ss_pred cchhhhHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCCceeEEEeccccch--hhhhhhhhcCCCeEEEEeecCCCC--
Q 005959 476 EDTENWKTAVGNFWSLLSPLIFSDHPKRPGDEDPSPPYNMVRNVLDMNAHFG--GFNSALLEKGKSVWVMNVVPTIGT-- 551 (667)
Q Consensus 476 ~d~~~w~~~v~~Y~~~l~~~~~~~~~~~~~~~~~~~~~~~~R~vlDm~~~~g--~faa~l~~~~~~vwvmnv~p~~~~-- 551 (667)
...+.|.+.+-+-...+. .+. .... +++|||+|-| |.--|++-++. +|+-.|+.
T Consensus 26 ~~~~~~~~Hi~DSL~~~~-~~~---------------~~~~-~~lDiGSGaGfPGipLaI~~p~~-----~~~LvEs~~K 83 (184)
T PF02527_consen 26 DPEEIWERHILDSLALLP-FLP---------------DFGK-KVLDIGSGAGFPGIPLAIARPDL-----QVTLVESVGK 83 (184)
T ss_dssp SHHHHHHHHHHHHHGGGG-CS----------------CCCS-EEEEETSTTTTTHHHHHHH-TTS-----EEEEEESSHH
T ss_pred CHHHHHHHHHHHHHHhhh-hhc---------------cCCc-eEEecCCCCCChhHHHHHhCCCC-----cEEEEeCCch
Confidence 445678777766654443 221 1111 6999999866 33333332221 23444442
Q ss_pred --Cchh-hHhcccc--cccccccccCCCCCCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEc---C
Q 005959 552 --NHLP-MILDRGF--VGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRD---T 623 (667)
Q Consensus 552 --~~l~-~~~~RGl--ig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d---~ 623 (667)
+=|. ++-+=|| +=++|...|. +.++..||+|=|- .-+.+..++--+-+.|+|||.++.-. .
T Consensus 84 K~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aR----------Av~~l~~l~~~~~~~l~~~G~~l~~KG~~~ 152 (184)
T PF02527_consen 84 KVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTAR----------AVAPLDKLLELARPLLKPGGRLLAYKGPDA 152 (184)
T ss_dssp HHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEE----------SSSSHHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred HHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEee----------hhcCHHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence 2222 4555666 6688888888 7788999999872 44555566666788999999998853 3
Q ss_pred HHHHHHHHHHHhhCCCeeEEe
Q 005959 624 ARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 624 ~~~~~~~~~~~~~~~W~~~~~ 644 (667)
.+.++++++-.+.+.++....
T Consensus 153 ~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 153 EEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp HHHHHTHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHhHHHHhCCEEeee
Confidence 455666666666666665554
No 399
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=83.86 E-value=4.4 Score=43.76 Aligned_cols=57 Identities=12% Similarity=0.207 Sum_probs=44.0
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc
Q 005959 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER 297 (667)
Q Consensus 232 ~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er 297 (667)
-+.+++.+.+...+ +..++|.=+|.|..+..+++.- ....|+++|.++.+++.++++
T Consensus 7 Vll~Evl~~L~~~~--------ggiyVD~TlG~GGHS~~iL~~l-~~g~vigiD~D~~Al~~ak~~ 63 (305)
T TIGR00006 7 VLLDEVVEGLNIKP--------DGIYIDCTLGFGGHSKAILEQL-GTGRLIGIDRDPQAIAFAKER 63 (305)
T ss_pred hhHHHHHHhcCcCC--------CCEEEEeCCCChHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHH
Confidence 34455555555433 3689999999999999999873 236799999999999999875
No 400
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=83.85 E-value=7.8 Score=44.55 Aligned_cols=120 Identities=21% Similarity=0.204 Sum_probs=74.8
Q ss_pred hhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcC---CceeEEEEecCCHHHHHHHHHc----CCC--c
Q 005959 231 EDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKE---LLTMCIANYEASGSQVQLTLER----GLP--A 301 (667)
Q Consensus 231 ~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g---~~~~sV~gvD~S~~ml~~A~er----gl~--~ 301 (667)
....+.+.+++... ...+|.|-.||+|.+.....+.- .....+.|.+....+...|+.. +++ +
T Consensus 172 ~~v~~liv~~l~~~--------~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~ 243 (489)
T COG0286 172 REVSELIVELLDPE--------PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDA 243 (489)
T ss_pred HHHHHHHHHHcCCC--------CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccc
Confidence 33444555555432 33599999999998866655431 1136789999999998887643 444 2
Q ss_pred eEEeecccCCCC-----CCCCccEEEecccc--cccc---------------------cCH-HHHHHHHHhcccCCeEEE
Q 005959 302 MIGSFASKQLPY-----PSLSFDMLHCARCG--VDWD---------------------QKD-GILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 302 ~~~~~da~~Lpf-----pd~sFDlV~~s~~l--l~~~---------------------~d~-~~~L~Ei~RvLKPGG~Lv 352 (667)
.+..++...-|. ..+.||.|+++.-. -.|. ... ..+++.+...|+|||+..
T Consensus 244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa 323 (489)
T COG0286 244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA 323 (489)
T ss_pred cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence 344444433332 33679999886321 1111 011 368999999999999777
Q ss_pred EEeCCC
Q 005959 353 WTSPLT 358 (667)
Q Consensus 353 is~p~~ 358 (667)
+..+..
T Consensus 324 ivl~~g 329 (489)
T COG0286 324 IVLPDG 329 (489)
T ss_pred EEecCC
Confidence 666543
No 401
>PLN02366 spermidine synthase
Probab=83.79 E-value=1.5 Score=47.37 Aligned_cols=103 Identities=21% Similarity=0.265 Sum_probs=52.4
Q ss_pred ceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC------CchhhHhcccc----cc-cccccccCCCCC-CCcccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT------NHLPMILDRGF----VG-VLHDWCEAFPTY-PRTYDL 582 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~------~~l~~~~~RGl----ig-~~~~~c~~f~ty-p~tyDl 582 (667)
.-++|||+|||.|+.+..+++. .++..+-+|=.|.. ..++.+ ..|+ +- +..|=-+-.... .+.||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~-~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDL-AVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhh-ccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3678999999999999999862 23332222222210 111111 0111 11 111210111122 368999
Q ss_pred ccccCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 583 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
|-++. ++.... ...---..++-.+-|.|+|||.++.+
T Consensus 169 Ii~D~-~dp~~~-~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDS-SDPVGP-AQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcC-CCCCCc-hhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 98753 332210 00000124567789999999999875
No 402
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=83.63 E-value=0.42 Score=52.11 Aligned_cols=58 Identities=19% Similarity=0.409 Sum_probs=35.7
Q ss_pred CCCCCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEE--cCHHHHHHHHH
Q 005959 573 FPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR--DTARLIESARA 632 (667)
Q Consensus 573 f~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~--d~~~~~~~~~~ 632 (667)
|+.-.+.||+|=|-..+.---. ..-....+|--+-.-|||||+||.. |...+++++++
T Consensus 139 ~~~~~~~FDvVScQFalHY~Fe--se~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 139 LPPRSRKFDVVSCQFALHYAFE--SEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLRE 198 (331)
T ss_dssp SSSTTS-EEEEEEES-GGGGGS--SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred ccccCCCcceeehHHHHHHhcC--CHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHh
Confidence 3432369999988655432211 2233446788899999999999976 65666566655
No 403
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=83.11 E-value=1.1 Score=49.93 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=66.1
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----cccc-c----cccccccCCCCC---CCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGFV-G----VLHDWCEAFPTY---PRTYDLV 583 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGli-g----~~~~~c~~f~ty---p~tyDl~ 583 (667)
++|||++||+|+|+-+.+..+. -.|+-+|.. .-+..+-+ -|+- . +..|..+....+ ..+||+|
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga----~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC----SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC----CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 5799999999999865443211 123344443 33322211 1331 0 112322222222 2579999
Q ss_pred cccCcc-ccccCC--CCCCCcchhheeccccccCCcEEEEEcC------HHHHHHHHHHHhhCCCeeEEee
Q 005959 584 HAEGLL-SLESGH--RHRCSTLDIFTEIDRILRPEGWVIIRDT------ARLIESARALTTRLKWDARVIE 645 (667)
Q Consensus 584 H~~~~~-~~~~~~--~~~c~~~~~l~E~dRiLRP~G~~i~~d~------~~~~~~~~~~~~~~~W~~~~~~ 645 (667)
=++--+ +..+.. .......+++.-.-++|+|||+++.-.. .+..+.+.+-+..-..++++.+
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 887443 211100 0012344555566789999999998432 3456666666666666666654
No 404
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=82.35 E-value=3.6 Score=43.51 Aligned_cols=67 Identities=15% Similarity=0.061 Sum_probs=49.3
Q ss_pred EEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCC--CCCccEEEecc
Q 005959 256 TILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYP--SLSFDMLHCAR 325 (667)
Q Consensus 256 ~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfp--d~sFDlV~~s~ 325 (667)
+++|+-||.|.++..+.+.|+. .+.++|.++..++..+.+... .+...|+..+... ...+|+|+.+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N~~~-~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHhCCC-CCccCccccCchhhcCCCCCEEEeCC
Confidence 6899999999999999888754 478999999998877665322 2444565555432 35699999864
No 405
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=82.20 E-value=7.3 Score=42.58 Aligned_cols=96 Identities=20% Similarity=0.195 Sum_probs=64.8
Q ss_pred CEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccC-----CCCCC-CCccEEEecccc
Q 005959 255 RTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ-----LPYPS-LSFDMLHCARCG 327 (667)
Q Consensus 255 ~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~-----Lpfpd-~sFDlV~~s~~l 327 (667)
.+|+=+|||+ |.++..+++. .....|+.+|.++.-++.|++.+....+.....+. +.... ..||+|+=.-.
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 4899999996 8777777665 23456888999999999998854222221111100 11122 36999985422
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
...++..+.+++||||.+++.....
T Consensus 248 ------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 248 ------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred ------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 2358999999999999999887643
No 406
>PHA03411 putative methyltransferase; Provisional
Probab=82.00 E-value=1.4 Score=46.99 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=56.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc--cccccccccccCCCCCCCccccccccCcccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR--GFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R--Glig~~~~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
..|||+|||.|.|+.+++..... .+|+-+|-. ..+..+-++ ..--+..|-.+... +++||+|=++--|....
T Consensus 66 grVLDLGcGsGilsl~la~r~~~---~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~--~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKP---EKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES--NEKFDVVISNPPFGKIN 140 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCC---CEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc--cCCCcEEEEcCCccccC
Confidence 46999999999999888652111 234444543 444444332 11111122222111 36899999987776532
Q ss_pred C--CCC--C---------C-CcchhheeccccccCCcEEEE
Q 005959 594 G--HRH--R---------C-STLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 594 ~--~~~--~---------c-~~~~~l~E~dRiLRP~G~~i~ 620 (667)
. ++. + | .+...+-..-++|.|+|.+++
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~ 181 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF 181 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence 1 001 1 1 135677888999999998775
No 407
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=81.99 E-value=3.6 Score=44.16 Aligned_cols=103 Identities=13% Similarity=0.020 Sum_probs=69.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc---------CCCceEEeecccCC--CCCCCCccEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER---------GLPAMIGSFASKQL--PYPSLSFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er---------gl~~~~~~~da~~L--pfpd~sFDlV 321 (667)
.+++||-||-|.|.+.+..+++ -.+-.+.-+|+....++..++- +..+.+..+|...+ ..+.++||+|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 5689999999999999888887 3556678888888877766542 22333333332111 1346899999
Q ss_pred EecccccccccCH----HHHHHHHHhcccCCeEEEEEeCC
Q 005959 322 HCARCGVDWDQKD----GILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 322 ~~s~~ll~~~~d~----~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
+.-.. -...+.. +.++..+.+.||+||+++...-.
T Consensus 200 i~dss-dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 200 ITDSS-DPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred EEecC-CccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 97643 2222221 34778899999999999987643
No 408
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=81.01 E-value=5.7 Score=44.99 Aligned_cols=106 Identities=17% Similarity=0.206 Sum_probs=65.3
Q ss_pred CCCEEEEeCCCCch--HHHHHhhcCCceeEEEEecCCHHHHHHHHH--cC-C---CceE--EeecccCCCCCC-CCccEE
Q 005959 253 GVRTILDIGCGYGS--FGAHLFSKELLTMCIANYEASGSQVQLTLE--RG-L---PAMI--GSFASKQLPYPS-LSFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~--~t~~La~~g~~~~sV~gvD~S~~ml~~A~e--rg-l---~~~~--~~~da~~Lpfpd-~sFDlV 321 (667)
.++.++|+|.|.|. .+.....++ ..-.++.+|.+.+|...... |+ - ...+ .+.--..+|... +.||+|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~-t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQ-TKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhccc-ccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 45778889888664 344443332 23457889999999876542 22 0 1111 122234566544 459999
Q ss_pred EecccccccccCHH---HHHHHHHhcccCCeEEEEEeCCCC
Q 005959 322 HCARCGVDWDQKDG---ILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 322 ~~s~~ll~~~~d~~---~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+|++.+++...... ..-.-+.+..++||++++......
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 99998666542221 233446778999999999987654
No 409
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=80.81 E-value=1.4 Score=40.48 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=25.8
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCC
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEAS 287 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S 287 (667)
......|||||.|.+.-.|.+.|+.. .|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G---~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPG---WGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCc---cccccc
Confidence 45679999999999999999988765 566653
No 410
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=80.54 E-value=0.065 Score=48.30 Aligned_cols=57 Identities=18% Similarity=0.290 Sum_probs=40.2
Q ss_pred ccccccchhhHhHHHHhhhhhccCCCCcCCcccCccCCCCccccCCchhhhhcccccccccccCCCC
Q 005959 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQ 161 (667)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~~~~~~~pC~d~~~~~~~~~~~~~~~er~c~~ 161 (667)
.+|||.|++.++.++..|+.+..-|. +++++.. |++......+..++.+++++.+..
T Consensus 33 ~~g~R~Y~~~~l~~l~~I~~l~~~G~---~l~ei~~-------~l~~~~~~~~l~~~~~~l~~~i~~ 89 (102)
T cd04789 33 ANGYRLYPDSDLQRLLLIQQLQAGGL---SLKECLA-------CLQGKLTRSLLLERLSSLAEQIAR 89 (102)
T ss_pred CCCCeeCCHHHHHHHHHHHHHHHCCC---CHHHHHH-------HHcCCcHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999988778 6666665 443333334445565666655544
No 411
>PRK03612 spermidine synthase; Provisional
Probab=80.40 E-value=2.7 Score=48.61 Aligned_cols=119 Identities=14% Similarity=0.116 Sum_probs=60.2
Q ss_pred eeEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhcc---------cc----ccc-ccccccCCCCCCCcc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDR---------GF----VGV-LHDWCEAFPTYPRTY 580 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~R---------Gl----ig~-~~~~c~~f~typ~ty 580 (667)
-++|||+|||.|+.+..+++. .++= .|+-+|-. .-+..+-+. ++ +-+ ..|=-+-....+++|
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~-~~v~--~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKY-PDVE--QVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhC-CCcC--eEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 468999999999999888762 2221 12222221 122222110 00 001 111111122345789
Q ss_pred ccccccCccccccCCCCCCCc--chhheeccccccCCcEEEEEc-----CHHHHHHHHHHHhhCCCe
Q 005959 581 DLVHAEGLLSLESGHRHRCST--LDIFTEIDRILRPEGWVIIRD-----TARLIESARALTTRLKWD 640 (667)
Q Consensus 581 Dl~H~~~~~~~~~~~~~~c~~--~~~l~E~dRiLRP~G~~i~~d-----~~~~~~~~~~~~~~~~W~ 640 (667)
|+|-++- .+.... ....+ ..++-++-|+|+|||.+++.. ..+...++.+..++....
T Consensus 375 DvIi~D~-~~~~~~--~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 375 DVIIVDL-PDPSNP--ALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLA 438 (521)
T ss_pred CEEEEeC-CCCCCc--chhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCE
Confidence 9998862 222210 00000 134556789999999999953 244455555555555343
No 412
>PLN02476 O-methyltransferase
Probab=80.27 E-value=1.7 Score=46.24 Aligned_cols=133 Identities=13% Similarity=0.102 Sum_probs=69.0
Q ss_pred ceeEEEeccccchhhhhhhhhc---CCCeEEEEeecCCCCCchhhHhccccc---c-cccccccCCCCC-----CCcccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGFV---G-VLHDWCEAFPTY-----PRTYDL 582 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~~~l~~~~~RGli---g-~~~~~c~~f~ty-----p~tyDl 582 (667)
+-++||++|+++|..+.+|... +-.|.++=.-|....-.-..+-+-|+- = +..|-.+-++.+ ..+||+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~ 197 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDF 197 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCE
Confidence 3679999999999999888752 112333333221111111122223431 0 011222222222 357999
Q ss_pred ccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcC------------HHHHHHHHH----HHhhCCCeeEEeee
Q 005959 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT------------ARLIESARA----LTTRLKWDARVIEI 646 (667)
Q Consensus 583 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~------------~~~~~~~~~----~~~~~~W~~~~~~~ 646 (667)
|..+.==. ....++-+.=++|||||.+|+-+. ......+++ ++..=+++..+.-.
T Consensus 198 VFIDa~K~---------~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llPi 268 (278)
T PLN02476 198 AFVDADKR---------MYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVPI 268 (278)
T ss_pred EEECCCHH---------HHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEEe
Confidence 88754322 233555555689999999987311 111223443 44444576665532
Q ss_pred ccCCCccEEEEEcc
Q 005959 647 ESNSDERLLICQKP 660 (667)
Q Consensus 647 ~~~~~~~~li~~K~ 660 (667)
.++++|++|.
T Consensus 269 ----gDGl~i~~K~ 278 (278)
T PLN02476 269 ----GDGMTICRKR 278 (278)
T ss_pred ----CCeeEEEEEC
Confidence 3678888774
No 413
>PHA01634 hypothetical protein
Probab=80.07 E-value=7 Score=37.16 Aligned_cols=69 Identities=16% Similarity=0.039 Sum_probs=47.0
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEE--eecccCCCCCCCCccEEEe
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIG--SFASKQLPYPSLSFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~--~~da~~Lpfpd~sFDlV~~ 323 (667)
..++|+|||++.|..+.+++-+|. ..|++++.++...+..++.-....+. ......++-.-+.||+...
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA--K~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA--SFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc--cEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 458999999999999999998874 46899999999988887631111111 0112234434456887764
No 414
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=79.90 E-value=12 Score=36.77 Aligned_cols=120 Identities=19% Similarity=0.215 Sum_probs=72.0
Q ss_pred EeCCCCchHHHHHhhcCC--ceeEEEEecCCHHHH----------HHHHHcCCCceEEeecccCCC----CCCCCccEEE
Q 005959 259 DIGCGYGSFGAHLFSKEL--LTMCIANYEASGSQV----------QLTLERGLPAMIGSFASKQLP----YPSLSFDMLH 322 (667)
Q Consensus 259 DIGCGtG~~t~~La~~g~--~~~sV~gvD~S~~ml----------~~A~ergl~~~~~~~da~~Lp----fpd~sFDlV~ 322 (667)
=||=|.=+|+..|++... ..+..+..|..++.. +..++.|..+.+. .|+..+. ...+.||.|+
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~-VDat~l~~~~~~~~~~FDrIi 80 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHG-VDATKLHKHFRLKNQRFDRII 80 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccC-CCCCcccccccccCCcCCEEE
Confidence 367777788888887622 223334455554333 2233445555443 4666665 3568999999
Q ss_pred eccccccc-----ccC-------HHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEee
Q 005959 323 CARCGVDW-----DQK-------DGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 389 (667)
Q Consensus 323 ~s~~ll~~-----~~d-------~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~ 389 (667)
-++--... ..+ ...+|+.+.++|+++|.+.++-..... ...|+- +.++...++.+..
T Consensus 81 FNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------y~~W~i-~~lA~~~gl~l~~ 149 (166)
T PF10354_consen 81 FNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------YDSWNI-EELAAEAGLVLVR 149 (166)
T ss_pred EeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------CccccH-HHHHHhcCCEEEE
Confidence 98641110 001 125788999999999999998654322 245664 5777776666653
No 415
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=79.26 E-value=2.2 Score=47.84 Aligned_cols=113 Identities=17% Similarity=0.187 Sum_probs=62.0
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHh----cccc---cccccccccCCCCCC---Cccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMIL----DRGF---VGVLHDWCEAFPTYP---RTYDLVHA 585 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~----~RGl---ig~~~~~c~~f~typ---~tyDl~H~ 585 (667)
..|||++||+|.|+..|.+....| +-+|.. .-+..+- ..|+ -=+..|..+.++.++ .+||+|-.
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~~V-----~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~ 368 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAKSV-----VGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLL 368 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCCEE-----EEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEE
Confidence 369999999999999998633333 333332 2222221 1232 112233333233322 46887765
Q ss_pred cCccccccCCCCCCCc-chhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEe
Q 005959 586 EGLLSLESGHRHRCST-LDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVI 644 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~-~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~ 644 (667)
+- .|-++ ..++-++.+ |+|++.++++-++.++.+--++...-.|++...
T Consensus 369 dP---------Pr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~~~ 418 (431)
T TIGR00479 369 DP---------PRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGITWV 418 (431)
T ss_pred Cc---------CCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEEEE
Confidence 21 23232 234334444 889999999977877755555444445765443
No 416
>PRK11524 putative methyltransferase; Provisional
Probab=79.23 E-value=1.7 Score=46.08 Aligned_cols=54 Identities=20% Similarity=-0.001 Sum_probs=0.0
Q ss_pred CceEEeecccCC--CCCCCCccEEEecccccc---------------cccCHHHHHHHHHhcccCCeEEEE
Q 005959 300 PAMIGSFASKQL--PYPSLSFDMLHCARCGVD---------------WDQKDGILLLEVDRVLKPGGYFVW 353 (667)
Q Consensus 300 ~~~~~~~da~~L--pfpd~sFDlV~~s~~ll~---------------~~~d~~~~L~Ei~RvLKPGG~Lvi 353 (667)
...+.++|+... .+++++||+|++.--... +..-....+.++.|+|||||.+++
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
No 417
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=79.07 E-value=11 Score=39.73 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=58.5
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 254 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 254 ~~~VLDIGCG-tG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
..+||-+||| .|..+..+++.. ...++.++.++..++.+++.+....+.........-..+.+|+++....
T Consensus 163 ~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~------ 234 (330)
T cd08245 163 GERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVV------ 234 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCC------
Confidence 4688889987 677766666651 2357778888888888866663322211110000001246898886421
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+.++.+.|+++|.++....
T Consensus 235 -~~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 235 -SGAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -cHHHHHHHHHhcccCCEEEEECC
Confidence 12467888999999999987653
No 418
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=79.04 E-value=1.6 Score=42.27 Aligned_cols=94 Identities=15% Similarity=0.116 Sum_probs=48.8
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhccc----ccccccccccCCCCCC-CccccccccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILDRG----FVGVLHDWCEAFPTYP-RTYDLVHAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~RG----lig~~~~~c~~f~typ-~tyDl~H~~~~~~ 590 (667)
.+|||+|||.|.++..|++... .|+-+|-. ..+..+-++- =+-+++.=.+.++ ++ ..||.|=++--|.
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~~-----~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERAA-----RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPYKVVGNLPYN 88 (169)
T ss_pred CEEEEECCCccHHHHHHHhcCC-----eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCCEEEECCCcc
Confidence 4799999999999999997432 34444443 3333333321 0112221112222 12 3577775543333
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEEcC
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT 623 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~ 623 (667)
... -.+ .-+++... +.++|+++++..
T Consensus 89 ~~~-----~~i-~~~l~~~~-~~~~~~l~~q~e 114 (169)
T smart00650 89 IST-----PIL-FKLLEEPP-AFRDAVLMVQKE 114 (169)
T ss_pred cHH-----HHH-HHHHhcCC-CcceEEEEEEHH
Confidence 211 122 23344333 569999999754
No 419
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=78.91 E-value=3.7 Score=37.28 Aligned_cols=86 Identities=20% Similarity=0.250 Sum_probs=60.4
Q ss_pred CCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC-----C-CCCCCccEEEecccccccccCHHH
Q 005959 263 GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----P-YPSLSFDMLHCARCGVDWDQKDGI 336 (667)
Q Consensus 263 GtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-----p-fpd~sFDlV~~s~~ll~~~~d~~~ 336 (667)
|.|.++..+++... ..|+++|.++.-++.+++.|....+. .....+ . .+.+.+|+|+-.-. ...
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~Ga~~~~~-~~~~~~~~~i~~~~~~~~~d~vid~~g-------~~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKELGADHVID-YSDDDFVEQIRELTGGRGVDVVIDCVG-------SGD 70 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHTTESEEEE-TTTSSHHHHHHHHTTTSSEEEEEESSS-------SHH
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhhccccccc-ccccccccccccccccccceEEEEecC-------cHH
Confidence 46888888887732 67899999999999999888433322 111110 1 23357999975422 246
Q ss_pred HHHHHHhcccCCeEEEEEeCCC
Q 005959 337 LLLEVDRVLKPGGYFVWTSPLT 358 (667)
Q Consensus 337 ~L~Ei~RvLKPGG~Lvis~p~~ 358 (667)
.+.+...+|+|+|.+++.....
T Consensus 71 ~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHhccCCEEEEEEccC
Confidence 8899999999999999988765
No 420
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=78.85 E-value=34 Score=35.86 Aligned_cols=123 Identities=17% Similarity=0.164 Sum_probs=62.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH----HHHcCCCceEEeecccCCCCC---CCCccEEEeccc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL----TLERGLPAMIGSFASKQLPYP---SLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~----A~ergl~~~~~~~da~~Lpfp---d~sFDlV~~s~~ 326 (667)
+++||=||=..-...+..+.. ....|+.+|+++..+++ |.+.|+++.....|.. -|+| .++||++++--.
T Consensus 45 gk~il~lGDDDLtSlA~al~~--~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR-~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALALTG--LPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLR-DPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp T-EEEEES-TT-HHHHHHHHT----SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TT-S---TTTSS-BSEEEE---
T ss_pred CCEEEEEcCCcHHHHHHHhhC--CCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEeccc-ccCCHHHhcCCCEEEeCCC
Confidence 588999996654332222222 24678999999999854 5566888777777743 3444 379999998743
Q ss_pred ccccccCHHHHHHHHHhcccCCe-EEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEee
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGG-YFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVS 389 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG-~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~ 389 (667)
+. .+-...++......||.-| ..+++--... .....|..++.....++.-+..
T Consensus 122 -yT-~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~--------~s~~~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 122 -YT-PEGLKLFLSRGIEALKGEGCAGYFGFTHKE--------ASPDKWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp -SS-HHHHHHHHHHHHHTB-STT-EEEEEE-TTT----------HHHHHHHHHHHHTS--EEEE
T ss_pred -CC-HHHHHHHHHHHHHHhCCCCceEEEEEecCc--------CcHHHHHHHHHHHHHCCcCHHH
Confidence 21 1223568888888999766 4333322111 1235687888877777765543
No 421
>PRK04148 hypothetical protein; Provisional
Probab=78.31 E-value=4.7 Score=38.39 Aligned_cols=93 Identities=14% Similarity=0.169 Sum_probs=59.1
Q ss_pred eEEEeccccchh-hhhhhhhcCCCeEEEEeecCCCCCchhhHhcccccccccccccCCCCCCCccccccccCccccccCC
Q 005959 517 RNVLDMNAHFGG-FNSALLEKGKSVWVMNVVPTIGTNHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLESGH 595 (667)
Q Consensus 517 R~vlDm~~~~g~-faa~l~~~~~~vwvmnv~p~~~~~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~~~ 595 (667)
+.|+|+|||+|. +|..|.+.+..|..+-+-| .-+.-+-++|+-.+..|+=+|=..-=+-+|+|-+
T Consensus 18 ~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~----~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys---------- 83 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKESGFDVIVIDINE----KAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS---------- 83 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHCCCEEEEEECCH----HHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE----------
Confidence 459999999995 9999987554444443332 4566677777655554443322211122233322
Q ss_pred CCCCCcchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEeeec
Q 005959 596 RHRCSTLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIE 647 (667)
Q Consensus 596 ~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~~ 647 (667)
+|-.+++...+.+||+.+.=++.+.-..
T Consensus 84 ------------------------irpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 84 ------------------------IRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred ------------------------eCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4567888999999999999988887443
No 422
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.30 E-value=12 Score=40.78 Aligned_cols=99 Identities=11% Similarity=0.062 Sum_probs=65.6
Q ss_pred CCCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC---------CCCCCCccEEE
Q 005959 253 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL---------PYPSLSFDMLH 322 (667)
Q Consensus 253 ~~~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L---------pfpd~sFDlV~ 322 (667)
.+.+||=+|+|+ |..+...++. +-...|+.+|.++.-++.|++-|............. -+....||+.+
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka-~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~ 247 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKA-MGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTF 247 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHH-cCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEE
Confidence 348999999996 5555555543 445678999999999999999775544322211101 12334588887
Q ss_pred ecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 323 CARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 323 ~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
-... . +..++.....+|+||.+++......
T Consensus 248 dCsG-~------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 248 DCSG-A------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred EccC-c------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 5432 2 2456666788999999888876543
No 423
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=77.56 E-value=13 Score=39.90 Aligned_cols=89 Identities=16% Similarity=0.113 Sum_probs=58.1
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 254 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 254 ~~~VLDIGCG-tG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
+.+||=.|+| .|.++..+++.. ...+++++.+++-++.+++.|....+. ... ...+.+|+++-...
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~~Ga~~vi~---~~~--~~~~~~d~~i~~~~------ 232 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALALGAASAGG---AYD--TPPEPLDAAILFAP------ 232 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHhCCceecc---ccc--cCcccceEEEECCC------
Confidence 4789999976 355556666552 235778888888889998877543321 111 11235887653322
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+.+..+.|++||.+++...
T Consensus 233 -~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 233 -AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred -cHHHHHHHHHhhCCCcEEEEEec
Confidence 12478888899999999988764
No 424
>PHA03412 putative methyltransferase; Provisional
Probab=77.50 E-value=2 Score=44.81 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=50.9
Q ss_pred EEEeccccchhhhhhhhhcC--CCeEEEEeecCCCC-CchhhHhcccccccccccccCCCCC--CCccccccccCccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKG--KSVWVMNVVPTIGT-NHLPMILDRGFVGVLHDWCEAFPTY--PRTYDLVHAEGLLSLE 592 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~--~~vwvmnv~p~~~~-~~l~~~~~RGlig~~~~~c~~f~ty--p~tyDl~H~~~~~~~~ 592 (667)
.|||+|||.|.|+.++...- .+ ..+|.-++-. +.+..+.+ .+.. .+-.+.-|-.+ +.+||+|=++-=|...
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~--~~~V~aVEID~~Al~~Ar~-n~~~-~~~~~~D~~~~~~~~~FDlIIsNPPY~~~ 127 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAK--PREIVCVELNHTYYKLGKR-IVPE-ATWINADALTTEFDTLFDMAISNPPFGKI 127 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCC--CcEEEEEECCHHHHHHHHh-hccC-CEEEEcchhcccccCCccEEEECCCCCCc
Confidence 79999999999999887520 01 1134444432 33322221 1211 11111222222 3589999988777644
Q ss_pred cCC--CCCC---Ccch-hheeccccccCCcEEE
Q 005959 593 SGH--RHRC---STLD-IFTEIDRILRPEGWVI 619 (667)
Q Consensus 593 ~~~--~~~c---~~~~-~l~E~dRiLRP~G~~i 619 (667)
... +.|. .+.. ++-..-|+||||++++
T Consensus 128 ~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~IL 160 (241)
T PHA03412 128 KTSDFKGKYTGAEFEYKVIERASQIARQGTFII 160 (241)
T ss_pred cccccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 311 1222 2223 4444557999999733
No 425
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=77.23 E-value=30 Score=35.80 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=72.8
Q ss_pred CEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCce--EEeecccCCCCC-CCCccEEEecccc
Q 005959 255 RTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPAM--IGSFASKQLPYP-SLSFDMLHCARCG 327 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~~--~~~~da~~Lpfp-d~sFDlV~~s~~l 327 (667)
.++.||||-.|.+..+|.+.+ ....+++.|+++.-++.|.+. ++.-. +..+|. -.++. +..+|+|+...+.
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~-~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNN-PASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred CceeeccCchhHhHHHHHhcC-CcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-ccccCccCCcCEEEEeCCc
Confidence 349999999999999999886 456788999998888777543 33222 233332 12233 3479998876541
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeCCCChhhhhhhHHHHhhhhhhhhhhhccceEEeec
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQAFLRNKENQKRWNFVRDFVENLCWELVSQ 390 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~~~lr~~e~~~~W~~ie~l~~~~~W~ll~~ 390 (667)
= .-....|.+-...|+.==+|++. |.... ..++.+.....|+...+
T Consensus 96 G---~lI~~ILee~~~~l~~~~rlILQ-Pn~~~-------------~~LR~~L~~~~~~I~~E 141 (226)
T COG2384 96 G---TLIREILEEGKEKLKGVERLILQ-PNIHT-------------YELREWLSANSYEIKAE 141 (226)
T ss_pred H---HHHHHHHHHhhhhhcCcceEEEC-CCCCH-------------HHHHHHHHhCCceeeee
Confidence 1 11235677777777644455553 32221 13466667777777655
No 426
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=77.19 E-value=3.1 Score=42.99 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=73.8
Q ss_pred CceeEEEeccccchhhhhhhhhcCCCeEEEEeecCCC-CCchhhHhcccccc--cccccccCCCCCCCccccccccCccc
Q 005959 514 NMVRNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG-TNHLPMILDRGFVG--VLHDWCEAFPTYPRTYDLVHAEGLLS 590 (667)
Q Consensus 514 ~~~R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~-~~~l~~~~~RGlig--~~~~~c~~f~typ~tyDl~H~~~~~~ 590 (667)
..=+-|||||||+|=-++.|.+++ -+|+ =+|- +.-|-++.||-+=| ++.|.-|..|+=|-|||=+-.-+-.
T Consensus 49 ~~~~~iLDIGCGsGLSg~vL~~~G-h~wi----GvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAv- 122 (270)
T KOG1541|consen 49 PKSGLILDIGCGSGLSGSVLSDSG-HQWI----GVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAV- 122 (270)
T ss_pred CCCcEEEEeccCCCcchheeccCC-ceEE----eecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeee-
Confidence 356789999999999999998865 4443 2233 36677777754432 4567779999989999954331111
Q ss_pred cccC-CCCCCCcc-----hhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCe
Q 005959 591 LESG-HRHRCSTL-----DIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWD 640 (667)
Q Consensus 591 ~~~~-~~~~c~~~-----~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~ 640 (667)
.|-+ ....|..+ ..+--+=..|.+|+-.|++=-++..+.++-|..+-.|.
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~a 178 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKA 178 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhh
Confidence 1210 00223333 22444668899999999984444444444444444443
No 427
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=77.13 E-value=13 Score=41.25 Aligned_cols=98 Identities=17% Similarity=0.174 Sum_probs=65.2
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCCc---eEEeecccCCC-CCCCCccEEEecc
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLPA---MIGSFASKQLP-YPSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~~---~~~~~da~~Lp-fpd~sFDlV~~s~ 325 (667)
.-+|||.=+|+|.=+.+++........|+..|++++.++..+++ ++.. .+...|+..+= ...+.||+|=.--
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 35899999999998888887722356799999999998876643 4444 44455555442 2467899996431
Q ss_pred cccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
+ -.+.-+|....+.+|.||+|.++..
T Consensus 130 ----f-GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 130 ----F-GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp ----S-S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred ----C-CCccHhHHHHHHHhhcCCEEEEecc
Confidence 1 2345699999999999999999865
No 428
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=76.93 E-value=14 Score=37.05 Aligned_cols=93 Identities=24% Similarity=0.219 Sum_probs=60.4
Q ss_pred CCCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC-------CCCCCccEEEec
Q 005959 253 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP-------YPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp-------fpd~sFDlV~~s 324 (667)
...+||.+|+|. |..+..+++.. ...+.+++.++...+.+++.+....+ +..... ...+.||+|+..
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~d~vi~~ 208 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKELGADHVI---DYKEEDLEEELRLTGGGGADVVIDA 208 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceec---cCCcCCHHHHHHHhcCCCCCEEEEC
Confidence 347899999995 66666666652 24578888888888877766532221 111111 124579999865
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeCC
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
.. ....+..+.+.|+++|.++.....
T Consensus 209 ~~-------~~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 209 VG-------GPETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CC-------CHHHHHHHHHhcccCCEEEEEccC
Confidence 32 114567788899999999977543
No 429
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=76.12 E-value=3 Score=43.27 Aligned_cols=97 Identities=20% Similarity=0.138 Sum_probs=59.8
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCc--------eeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC--------CCCCC
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELL--------TMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP--------YPSLS 317 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~--------~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp--------fpd~s 317 (667)
..+++|+-+.+|+++..|.++-+. ...|+++|+-+ |.- - ..+...++|+.... |..+.
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-MaP---I--~GV~qlq~DIT~~stae~Ii~hfggek 115 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-MAP---I--EGVIQLQGDITSASTAEAIIEHFGGEK 115 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-CCc---c--CceEEeecccCCHhHHHHHHHHhCCCC
Confidence 578999999999999999876221 11267777632 210 0 11233455554432 55668
Q ss_pred ccEEEeccc----ccccccCH------HHHHHHHHhcccCCeEEEEEeC
Q 005959 318 FDMLHCARC----GVDWDQKD------GILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 318 FDlV~~s~~----ll~~~~d~------~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
-|+|+|-.+ .+|=.++. ..+|.-...+|||||.|+--.+
T Consensus 116 AdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 116 ADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred ccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 999999753 12211111 1466677899999999986554
No 430
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=75.90 E-value=15 Score=39.00 Aligned_cols=93 Identities=18% Similarity=0.214 Sum_probs=58.7
Q ss_pred CCEEEEeCCCC-chHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeec---ccCCCCCCCCccEEEeccccc
Q 005959 254 VRTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFA---SKQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 254 ~~~VLDIGCGt-G~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~d---a~~Lpfpd~sFDlV~~s~~ll 328 (667)
..+||-.|||. |..+..+++. |+ ..+++++.++...+.+++.+....+ ... ...+....+.||+|+....
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~--~~v~~~~~s~~~~~~~~~~g~~~vi-~~~~~~~~~~~~~~~~vd~vld~~g-- 240 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGA--AEIVATDLADAPLAVARAMGADETV-NLARDPLAAYAADKGDFDVVFEASG-- 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--cEEEEECCCHHHHHHHHHcCCCEEE-cCCchhhhhhhccCCCccEEEECCC--
Confidence 47888888875 6666666664 32 2477888888888877766643222 111 1112212235899986522
Q ss_pred ccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 329 DWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 329 ~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+.++.+.|+++|.++....
T Consensus 241 -----~~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 241 -----APAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred -----CHHHHHHHHHHHhcCCEEEEEec
Confidence 12467888999999999997643
No 431
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=75.43 E-value=8.2 Score=44.63 Aligned_cols=95 Identities=13% Similarity=0.114 Sum_probs=61.9
Q ss_pred CCCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccC---------------------
Q 005959 253 GVRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ--------------------- 310 (667)
Q Consensus 253 ~~~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~--------------------- 310 (667)
.+.+||=+|||. |..+..+++.- ...|+.+|.++..++.+++.|... ...+...
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~lGa~~--v~v~~~e~g~~~~gYa~~~s~~~~~~~~ 238 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSMGAEF--LELDFKEEGGSGDGYAKVMSEEFIAAEM 238 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeE--EeccccccccccccceeecCHHHHHHHH
Confidence 458999999996 56666555541 234788999999888887755332 1112100
Q ss_pred --CCCCCCCccEEEecccccccccCHHHHHHHHHhcccCCeEEE
Q 005959 311 --LPYPSLSFDMLHCARCGVDWDQKDGILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 311 --Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lv 352 (667)
++-.-..+|+|++.- ++.-.+.+.-..+++.+.+|||+.++
T Consensus 239 ~~~~e~~~~~DIVI~Ta-lipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 239 ELFAAQAKEVDIIITTA-LIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHhCCCCEEEECc-ccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 111124699998873 34444455557889999999999977
No 432
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=75.37 E-value=16 Score=38.28 Aligned_cols=98 Identities=19% Similarity=0.242 Sum_probs=62.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCH----HHHHHHHHcC-CCceEEeecccCCCCC----CCCccEEEe
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASG----SQVQLTLERG-LPAMIGSFASKQLPYP----SLSFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~----~ml~~A~erg-l~~~~~~~da~~Lpfp----d~sFDlV~~ 323 (667)
+..+||=+|++.|..-.+..+---+.-.|++++.|+ ..+..|++|- +-..+. |+ +.|.. -.-.|+|++
T Consensus 156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiE--DA-rhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIE--DA-RHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred CCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeec--cC-CCchheeeeeeeEEEEec
Confidence 457999999999998888776533445578888774 3456676663 222222 32 23321 125677776
Q ss_pred cccccccccCH-HHHHHHHHhcccCCeEEEEEeCC
Q 005959 324 ARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPL 357 (667)
Q Consensus 324 s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~ 357 (667)
--. .++. ..+..+..-.||+||.|+++...
T Consensus 233 Dva----qpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 233 DVA----QPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred cCC----CchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 522 2333 34666788899999999998653
No 433
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=74.91 E-value=3.5 Score=42.10 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=18.2
Q ss_pred hhheeccccccCCcEEEEEcCH
Q 005959 603 DIFTEIDRILRPEGWVIIRDTA 624 (667)
Q Consensus 603 ~~l~E~dRiLRP~G~~i~~d~~ 624 (667)
.+|.|.-=+||+||.++.-.++
T Consensus 164 ~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 164 TLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred hHHHHHHhhhhcCceEEEEeeH
Confidence 5888889999999999876554
No 434
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=74.77 E-value=1.5 Score=44.76 Aligned_cols=90 Identities=21% Similarity=0.237 Sum_probs=44.6
Q ss_pred EEEeccccchhhhhhhhhcCCCe-EEEEeecCCCC-CchhhHhcc-cc---cccccccccCCCCCCCccccccccCcccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSV-WVMNVVPTIGT-NHLPMILDR-GF---VGVLHDWCEAFPTYPRTYDLVHAEGLLSL 591 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~v-wvmnv~p~~~~-~~l~~~~~R-Gl---ig~~~~~c~~f~typ~tyDl~H~~~~~~~ 591 (667)
.|||+|||+|=++|.|...-.++ -|..|=....- ..-.-.+++ |+ .-+..|=.+..+.. -.||.||+..-...
T Consensus 75 ~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~-apfD~I~v~~a~~~ 153 (209)
T PF01135_consen 75 RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE-APFDRIIVTAAVPE 153 (209)
T ss_dssp EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG--SEEEEEESSBBSS
T ss_pred EEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC-CCcCEEEEeeccch
Confidence 79999999998888776421111 22233222111 111122222 32 22333433433321 35999998543322
Q ss_pred ccCCCCCCCcchhheeccccccCCcEEEE
Q 005959 592 ESGHRHRCSTLDIFTEIDRILRPEGWVII 620 (667)
Q Consensus 592 ~~~~~~~c~~~~~l~E~dRiLRP~G~~i~ 620 (667)
++.-++| -|+|||.+|+
T Consensus 154 ---------ip~~l~~---qL~~gGrLV~ 170 (209)
T PF01135_consen 154 ---------IPEALLE---QLKPGGRLVA 170 (209)
T ss_dssp -----------HHHHH---TEEEEEEEEE
T ss_pred ---------HHHHHHH---hcCCCcEEEE
Confidence 2244554 4999999996
No 435
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=74.75 E-value=1.4 Score=44.85 Aligned_cols=133 Identities=18% Similarity=0.270 Sum_probs=70.5
Q ss_pred ceeEEEeccccchhhhhhhhhc---CCCeEEEEeecCCCCCchhhHhcccc---cccc-cccccCCCCC-----CCcccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRGF---VGVL-HDWCEAFPTY-----PRTYDL 582 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~~~l~~~~~RGl---ig~~-~~~c~~f~ty-----p~tyDl 582 (667)
+-++||.+|+++|==+.+|.+. +-.|+++-+-|....-.-..+-.-|+ |=+. .|..+-+++. +.+||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 5789999999999766666641 23455555544332211112233354 2122 3344433332 368999
Q ss_pred ccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcC-------------HHH--H-HHHHHHHhhCCCeeEEeee
Q 005959 583 VHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDT-------------ARL--I-ESARALTTRLKWDARVIEI 646 (667)
Q Consensus 583 ~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~-------------~~~--~-~~~~~~~~~~~W~~~~~~~ 646 (667)
|.-+.-=+.|. .++-..=++|||||.+|+-+. .+. + +-.+.|...=+.++.+...
T Consensus 125 VFiDa~K~~y~---------~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~llpi 195 (205)
T PF01596_consen 125 VFIDADKRNYL---------EYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLLPI 195 (205)
T ss_dssp EEEESTGGGHH---------HHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEECS
T ss_pred EEEcccccchh---------hHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEEEe
Confidence 98865433332 344445589999999998422 111 1 2222344444566555521
Q ss_pred ccCCCccEEEEEcc
Q 005959 647 ESNSDERLLICQKP 660 (667)
Q Consensus 647 ~~~~~~~~li~~K~ 660 (667)
.++++|++|.
T Consensus 196 ----gdGl~l~~K~ 205 (205)
T PF01596_consen 196 ----GDGLTLARKR 205 (205)
T ss_dssp ----TTEEEEEEE-
T ss_pred ----CCeeEEEEEC
Confidence 3678888884
No 436
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=74.32 E-value=0.12 Score=46.61 Aligned_cols=57 Identities=21% Similarity=0.191 Sum_probs=37.8
Q ss_pred ccccccchhhHhHHHHhhhhhccCCCCcCCcccCccCCCCccccCCchhhhhcccccccccccCCCC
Q 005959 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNESRNLALGYSNGDEVDRHCGQ 161 (667)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~~~~~~~pC~d~~~~~~~~~~~~~~~er~c~~ 161 (667)
.+|||.|++.|+.++..|..+..-|. +++++.. |++.........++.+.+++.+..
T Consensus 33 ~~g~R~Y~~~dl~~l~~I~~l~~~G~---~l~ei~~-------~~~~~~~~~~l~~~~~~l~~~i~~ 89 (102)
T cd04775 33 EANYRLYSEADLSRLEKIVFLQAGGL---PLEEIAG-------CLAQPHVQAILEERLQSLNREIQR 89 (102)
T ss_pred CCCCeeeCHHHHHHHHHHHHHHHCCC---CHHHHHH-------HHcCCcHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999988888 6666665 333222233344454555554443
No 437
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=74.23 E-value=14 Score=40.75 Aligned_cols=109 Identities=20% Similarity=0.296 Sum_probs=65.8
Q ss_pred cCCCEEEEeCCCCchHHHHHhhcCCce---eEEEEecCCHHHHHHH---HHcCC--CceEEeecccCCC---------CC
Q 005959 252 AGVRTILDIGCGYGSFGAHLFSKELLT---MCIANYEASGSQVQLT---LERGL--PAMIGSFASKQLP---------YP 314 (667)
Q Consensus 252 ~~~~~VLDIGCGtG~~t~~La~~g~~~---~sV~gvD~S~~ml~~A---~ergl--~~~~~~~da~~Lp---------fp 314 (667)
.+..+|||+-+.+|.=+..|.+..... ..+++.|.+..-+... ..+-. ...+...++...| ..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 355899999999999999998863321 2578889887644332 22211 1122222222222 23
Q ss_pred CCCccEEEecc-c----ccc---------cc--------cCHHHHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 315 SLSFDMLHCAR-C----GVD---------WD--------QKDGILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 315 d~sFDlV~~s~-~----ll~---------~~--------~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
...||-|.|-- | .+. |. .-.-.+|..-.++||+||.+|.++-..++
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp 301 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP 301 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence 34699998731 1 000 11 01125788899999999999999875543
No 438
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=73.99 E-value=5.7 Score=44.70 Aligned_cols=65 Identities=22% Similarity=0.221 Sum_probs=45.5
Q ss_pred cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHH
Q 005959 228 DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLE 296 (667)
Q Consensus 228 d~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~e 296 (667)
++...|..-+...+..... ....+..-|||||.|||.++...+..|. -.+++++.-..|.+.|++
T Consensus 43 dRNiky~~gi~~tIte~kh--~~~~gkv~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~ark 107 (636)
T KOG1501|consen 43 DRNIKYRLGIEKTITEPKH--VLDIGKVFVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARK 107 (636)
T ss_pred cccHHHHHHHHHHhcccce--eccCceEEEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHH
Confidence 4445666666666554332 1112334699999999999988888874 358999999999988864
No 439
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.85 E-value=0.55 Score=45.77 Aligned_cols=47 Identities=26% Similarity=0.278 Sum_probs=37.4
Q ss_pred cccCCCCCCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 569 WCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 569 ~c~~f~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
|-.+|-+ ++-|+|-|.+++.+.+ -+ ....-+-|--|+|||||++-+.
T Consensus 39 ~e~~F~d--ns~d~iyaeHvlEHlt---~~-Eg~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 39 NESMFED--NSVDAIYAEHVLEHLT---YD-EGTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred hhccCCC--cchHHHHHHHHHHHHh---HH-HHHHHHHHHHHHhCcCcEEEEE
Confidence 4456765 9999999999998876 22 2336788999999999999874
No 440
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=73.60 E-value=9.5 Score=38.69 Aligned_cols=107 Identities=8% Similarity=-0.015 Sum_probs=68.4
Q ss_pred CCCEEEEeCCCCchHHHHHhhc----CCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCC-------CCCCCccEE
Q 005959 253 GVRTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLP-------YPSLSFDML 321 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~----g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lp-------fpd~sFDlV 321 (667)
.++.|+|+|.-.|..+.+++.. | +...|.++|++-..++.+..+-..+.+..++..... ..++.--+.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~G-q~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIf 147 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIG-QPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIF 147 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcC-CCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEE
Confidence 3578999999988777666643 4 446788999987766555444445566655543322 111112233
Q ss_pred EecccccccccCHHHHHHHHHhcccCCeEEEEEeCCCChh
Q 005959 322 HCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSPLTNPQ 361 (667)
Q Consensus 322 ~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p~~~~~ 361 (667)
+|..+ .|.++..-+-|+-+.++|..|-|+++-+...+.+
T Consensus 148 vilDs-dHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dl 186 (237)
T COG3510 148 VILDS-DHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDL 186 (237)
T ss_pred EEecC-CchHHHHHHHHHHhhhHhhcCceEEEecccccCC
Confidence 33333 4444445567777889999999999988766553
No 441
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=73.27 E-value=4.8 Score=45.49 Aligned_cols=112 Identities=18% Similarity=0.274 Sum_probs=62.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc----ccc---cccccccccCCCC--C-CCccccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD----RGF---VGVLHDWCEAFPT--Y-PRTYDLVHA 585 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~----RGl---ig~~~~~c~~f~t--y-p~tyDl~H~ 585 (667)
..|||+|||.|.|+.+|.... ..|+-+|.. ..+..+-+ .|+ -=+..|+-+.++. + +.+||+|-+
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~-----~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~ 373 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQA-----AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLL 373 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhC-----CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEE
Confidence 379999999999999998632 245555554 44433322 232 1122333332222 2 257888865
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEEEcCHHHH-HHHHHHHhhCCCeeEEe
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLI-ESARALTTRLKWDARVI 644 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~-~~~~~~~~~~~W~~~~~ 644 (667)
+- .|..+..++-.+-+ |.|++.++++=++.++ ..++.|.+ --|++...
T Consensus 374 dP---------Pr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~~i 422 (443)
T PRK13168 374 DP---------PRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLKRA 422 (443)
T ss_pred Cc---------CCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEEEE
Confidence 21 33344455544444 5899999999666554 44444433 34665543
No 442
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=73.16 E-value=20 Score=37.72 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=58.2
Q ss_pred CCEEEEeCCC-CchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC----CCCCCCccEEEecccc
Q 005959 254 VRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL----PYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCG-tG~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L----pfpd~sFDlV~~s~~l 327 (667)
..+||-+|+| .|..+..+++. |.. .+..++.+++..+.+++.+... +........ ....+.+|+|+....
T Consensus 160 g~~vlI~g~g~vg~~~~~la~~~G~~--~v~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~vd~v~~~~~- 235 (334)
T cd08234 160 GDSVLVFGAGPIGLLLAQLLKLNGAS--RVTVAEPNEEKLELAKKLGATE-TVDPSREDPEAQKEDNPYGFDVVIEATG- 235 (334)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCc--EEEEECCCHHHHHHHHHhCCeE-EecCCCCCHHHHHHhcCCCCcEEEECCC-
Confidence 4789999865 35565666655 322 2667788888888887766542 221111110 113456999986521
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+.++.+.|+++|.++....
T Consensus 236 ------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 236 ------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred ------ChHHHHHHHHHHhcCCEEEEEec
Confidence 13577888999999999987654
No 443
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=72.81 E-value=0.87 Score=47.91 Aligned_cols=94 Identities=16% Similarity=0.262 Sum_probs=57.7
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-Cchh---------hHhcccc---cccccccccCCCCCCCccccc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLP---------MILDRGF---VGVLHDWCEAFPTYPRTYDLV 583 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~---------~~~~RGl---ig~~~~~c~~f~typ~tyDl~ 583 (667)
|+|||+|||-|=..=.|...+. +|+-+|.. ..+- -.+++++ |-..|.=-|.+- -.||.|
T Consensus 91 ~~ilDvGCGgGLLSepLArlga-----~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaV 162 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA-----QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAV 162 (282)
T ss_pred ceEEEeccCccccchhhHhhCC-----eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---ccccee
Confidence 6699999999988777765443 44445543 2222 2344442 111111112221 229999
Q ss_pred cccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH
Q 005959 584 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 624 (667)
Q Consensus 584 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 624 (667)
=|+-++.+.. +...++-=+=+.|+|||-++|.+-.
T Consensus 163 vcsevleHV~------dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 163 VCSEVLEHVK------DPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eeHHHHHHHh------CHHHHHHHHHHHhCCCCceEeeehh
Confidence 9999988876 2234555566889999999998654
No 444
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=72.42 E-value=15 Score=39.55 Aligned_cols=93 Identities=13% Similarity=0.080 Sum_probs=56.7
Q ss_pred CCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 254 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 254 ~~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
..+||=+|||. |.++..++++-.....++++|.+++-++.+++-+. ... . ..+. .+..+|+|+-.-. ..
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~--~~~-~--~~~~-~~~g~d~viD~~G----~~ 233 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADE--TYL-I--DDIP-EDLAVDHAFECVG----GR 233 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCc--eee-h--hhhh-hccCCcEEEECCC----CC
Confidence 47899999873 56666666531112357788988888888765321 111 0 1111 1124898885422 01
Q ss_pred CHHHHHHHHHhcccCCeEEEEEeC
Q 005959 333 KDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
.....+.+..++|++||.+++...
T Consensus 234 ~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 234 GSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred ccHHHHHHHHHhCcCCcEEEEEee
Confidence 123578889999999999998754
No 445
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=72.33 E-value=4.1 Score=43.82 Aligned_cols=109 Identities=16% Similarity=0.184 Sum_probs=60.7
Q ss_pred EEEeccccchhhhhhhhhcCCC--eEEEEeecCCCC--CchhhHhcccccccccccccCCCCCCCccccccccCcccccc
Q 005959 518 NVLDMNAHFGGFNSALLEKGKS--VWVMNVVPTIGT--NHLPMILDRGFVGVLHDWCEAFPTYPRTYDLVHAEGLLSLES 593 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~--vwvmnv~p~~~~--~~l~~~~~RGlig~~~~~c~~f~typ~tyDl~H~~~~~~~~~ 593 (667)
+|+|+|||+|-.|+.|.+. .| -++|-=+...+- ++..... -++=+..+=+..-|+.-...||+|=|+-=|..-+
T Consensus 161 ~vlDlGCG~Gvlg~~la~~-~p~~~vtmvDvn~~Av~~ar~Nl~~-N~~~~~~v~~s~~~~~v~~kfd~IisNPPfh~G~ 238 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKK-SPQAKLTLVDVNARAVESARKNLAA-NGVENTEVWASNLYEPVEGKFDLIISNPPFHAGK 238 (300)
T ss_pred cEEEeCCCccHHHHHHHHh-CCCCeEEEEecCHHHHHHHHHhHHH-cCCCccEEEEecccccccccccEEEeCCCccCCc
Confidence 9999999999999999973 44 455532222221 1111121 2233311111222333335899998887776433
Q ss_pred CCCCCCCcc----hhheeccccccCCcEEEEE--cCHHHHHHHHHH
Q 005959 594 GHRHRCSTL----DIFTEIDRILRPEGWVIIR--DTARLIESARAL 633 (667)
Q Consensus 594 ~~~~~c~~~----~~l~E~dRiLRP~G~~i~~--d~~~~~~~~~~~ 633 (667)
--.. .++-+-=+-|++||-++|= .-...-.+++++
T Consensus 239 -----~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~ 279 (300)
T COG2813 239 -----AVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKEL 279 (300)
T ss_pred -----chhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHh
Confidence 1111 4566667889999977763 333334444443
No 446
>PRK10742 putative methyltransferase; Provisional
Probab=72.04 E-value=17 Score=38.26 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=37.7
Q ss_pred HHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHH
Q 005959 235 HQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQ 292 (667)
Q Consensus 235 ~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~ 292 (667)
+.+++.+.+..+ ..-+|||.=+|.|..+..++.+|.. |+.+|-++....
T Consensus 76 ~~l~kAvglk~g------~~p~VLD~TAGlG~Da~~las~G~~---V~~vEr~p~vaa 124 (250)
T PRK10742 76 EAVAKAVGIKGD------YLPDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAA 124 (250)
T ss_pred cHHHHHhCCCCC------CCCEEEECCCCccHHHHHHHHcCCE---EEEEECCHHHHH
Confidence 356666665554 1238999999999999999999754 899999987654
No 447
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=71.69 E-value=2.5 Score=44.89 Aligned_cols=75 Identities=17% Similarity=0.335 Sum_probs=52.8
Q ss_pred cccccccCCCCCC---CccccccccCccccccCCCCCCCcchhheeccccccCCcEEEE--------EcC-------HH-
Q 005959 565 VLHDWCEAFPTYP---RTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII--------RDT-------AR- 625 (667)
Q Consensus 565 ~~~~~c~~f~typ---~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~--------~d~-------~~- 625 (667)
+..|.+|-++. + .+||.|=.. .|..-- -++.++|-.|-++|+|||++|= .+. .+
T Consensus 149 ~aGDF~e~y~~-~~~~~~~d~VvT~-FFIDTA-----~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveL 221 (270)
T PF07942_consen 149 CAGDFLEVYGP-DENKGSFDVVVTC-FFIDTA-----ENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVEL 221 (270)
T ss_pred ecCccEEecCC-cccCCcccEEEEE-EEeech-----HHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCC
Confidence 34566666655 3 578876543 333221 3577899999999999998883 343 22
Q ss_pred HHHHHHHHHhhCCCeeEEeee
Q 005959 626 LIESARALTTRLKWDARVIEI 646 (667)
Q Consensus 626 ~~~~~~~~~~~~~W~~~~~~~ 646 (667)
.+++|+.+++.+-|+....+.
T Consensus 222 s~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 222 SLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CHHHHHHHHHHCCCEEEEEEE
Confidence 289999999999999987654
No 448
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=70.47 E-value=0.73 Score=45.51 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=43.1
Q ss_pred cccccccchhhHhHHHHhhhhhccCCCCcCCcccCccCCCCccccCCch--hhhhcccccccccccCCCCCC
Q 005959 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSEDFENYVPCFNES--RNLALGYSNGDEVDRHCGQEL 163 (667)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~~~~~~~pC~d~~--~~~~~~~~~~~~~er~c~~~~ 163 (667)
..+|||.|++.++.++..|..+...|. +++++.. |++.. .....+.++++++++++..+.
T Consensus 33 ~~~gyR~Y~~~dl~rL~~I~~lr~~G~---sL~eI~~-------ll~~~~~~~~~~L~~~~~~l~~ei~~L~ 94 (172)
T cd04790 33 SESNYRLYGERDLERLEQICAYRSAGV---SLEDIRS-------LLQQPGDDATDVLRRRLAELNREIQRLR 94 (172)
T ss_pred CCCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH-------HHhcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999998888 6777776 33321 122335566667777777643
No 449
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=70.45 E-value=22 Score=38.32 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=57.6
Q ss_pred CCEEEEeCCCC-chHHHHHhhcCCceeEEEEecC---CHHHHHHHHHcCCCceEEeecccCC--CCCCCCccEEEecccc
Q 005959 254 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEA---SGSQVQLTLERGLPAMIGSFASKQL--PYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~---S~~ml~~A~ergl~~~~~~~da~~L--pfpd~sFDlV~~s~~l 327 (667)
+.+||=+|+|. |.++..+++.. ...+++++. ++.-++.+++.|... .....+.+ ....+.||+|+-.-.
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g- 247 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATG- 247 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcC-
Confidence 46899999873 66777777652 224666665 677788888766532 11111110 001246898886532
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+.+..++|++||.+++...
T Consensus 248 ------~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 248 ------VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred ------CHHHHHHHHHHccCCcEEEEEec
Confidence 12477889999999999987654
No 450
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=70.18 E-value=11 Score=39.41 Aligned_cols=98 Identities=18% Similarity=0.177 Sum_probs=58.5
Q ss_pred cchhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc-----CCCc-
Q 005959 228 DGVEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER-----GLPA- 301 (667)
Q Consensus 228 d~~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er-----gl~~- 301 (667)
.+.++|++.++++|....+ . .+.+.-++||||-|.--.=-.+--+ --...++|.|+++..++.|+.. ++..
T Consensus 55 PgRAdYih~laDLL~s~~g-~-~~~~~i~~LDIGvGAnCIYPliG~~-eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~ 131 (292)
T COG3129 55 PGRADYIHHLADLLASTSG-Q-IPGKNIRILDIGVGANCIYPLIGVH-EYGWRFVGSEIDSQSLSSAKAIISANPGLERA 131 (292)
T ss_pred CChhHHHHHHHHHHHhcCC-C-CCcCceEEEeeccCcccccccccce-eecceeecCccCHHHHHHHHHHHHcCcchhhh
Confidence 5679999999999986665 1 2245568999998854332222111 1134589999999988877642 1111
Q ss_pred -eEE-eecc----cCCCCCCCCccEEEeccccc
Q 005959 302 -MIG-SFAS----KQLPYPSLSFDMLHCARCGV 328 (667)
Q Consensus 302 -~~~-~~da----~~Lpfpd~sFDlV~~s~~ll 328 (667)
.+. +-+. ..+--.++.||++.|+--++
T Consensus 132 I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh 164 (292)
T COG3129 132 IRLRRQKDSDAIFNGIIGKNERYDATLCNPPFH 164 (292)
T ss_pred eeEEeccCccccccccccccceeeeEecCCCcc
Confidence 111 1111 11112257899999997633
No 451
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=69.89 E-value=6.8 Score=40.39 Aligned_cols=132 Identities=14% Similarity=0.193 Sum_probs=74.4
Q ss_pred ceeEEEeccccchhhhhhhhhcCCC----eEEEEeecCCCCCchhhHhcccc----cccc-cccccCCCC-CCCcccccc
Q 005959 515 MVRNVLDMNAHFGGFNSALLEKGKS----VWVMNVVPTIGTNHLPMILDRGF----VGVL-HDWCEAFPT-YPRTYDLVH 584 (667)
Q Consensus 515 ~~R~vlDm~~~~g~faa~l~~~~~~----vwvmnv~p~~~~~~l~~~~~RGl----ig~~-~~~c~~f~t-yp~tyDl~H 584 (667)
.-++||.+|.+.|==|..|.. .-| +.+.-+-|......-...-+=|+ .-+. .|+-+-++. ..-+||||.
T Consensus 59 ~~k~iLEiGT~~GySal~mA~-~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMAL-ALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred CCceEEEeecccCHHHHHHHh-hCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 578999999988855555543 112 22222222111111122223343 1222 488777774 668999998
Q ss_pred ccCccccccCCCCCCCcchhheeccccccCCcEEEEE--------------cCHHHHHHHHHHHhhCCCe----eEEeee
Q 005959 585 AEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR--------------DTARLIESARALTTRLKWD----ARVIEI 646 (667)
Q Consensus 585 ~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~--------------d~~~~~~~~~~~~~~~~W~----~~~~~~ 646 (667)
-+.= +-..+..+=+.=++|||||.+|+- +.......++....-+.++ ..+..
T Consensus 138 IDad---------K~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP- 207 (219)
T COG4122 138 IDAD---------KADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLP- 207 (219)
T ss_pred EeCC---------hhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEe-
Confidence 7443 334446666677789999999862 2234455566655555544 33331
Q ss_pred ccCCCccEEEEEcc
Q 005959 647 ESNSDERLLICQKP 660 (667)
Q Consensus 647 ~~~~~~~~li~~K~ 660 (667)
-.+.++|+.|.
T Consensus 208 ---~gDGl~v~~k~ 218 (219)
T COG4122 208 ---LGDGLLLSRKR 218 (219)
T ss_pred ---cCCceEEEeec
Confidence 12788888875
No 452
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=69.40 E-value=25 Score=37.98 Aligned_cols=94 Identities=13% Similarity=0.050 Sum_probs=59.0
Q ss_pred CCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC-----C-CCCCCccEEEeccc
Q 005959 254 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----P-YPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-----p-fpd~sFDlV~~s~~ 326 (667)
..+||=+|||. |.++..+++.. -...|+++|.++...+.+++.|....+. ...... . .....+|+|+-.-.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~-~~~~~~~~~i~~~~~~~g~d~vid~~g 254 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEWAREFGATHTVN-SSGTDPVEAIRALTGGFGADVVIDAVG 254 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHcCCceEEc-CCCcCHHHHHHHHhCCCCCCEEEECCC
Confidence 47899888863 56666666652 1124788899999999998777532221 111110 0 12235898875421
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
. ...+.+..+.|++||.+++...
T Consensus 255 ------~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 255 ------R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred ------C-HHHHHHHHHHhccCCEEEEECC
Confidence 1 2467778889999999998754
No 453
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=69.00 E-value=2.5 Score=43.22 Aligned_cols=105 Identities=22% Similarity=0.283 Sum_probs=58.0
Q ss_pred EEEeccccchhhhhhhhhcCCCeEEEEeecCCC---------CCchhhHhcccccccccccccCCCCCC-CccccccccC
Q 005959 518 NVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIG---------TNHLPMILDRGFVGVLHDWCEAFPTYP-RTYDLVHAEG 587 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~---------~~~l~~~~~RGlig~~~~~c~~f~typ-~tyDl~H~~~ 587 (667)
-||.+|||+|.---++-. +..+=|-.+=|... ...-+.=++|=.+|- -|.+|--+ -+||.|-|.-
T Consensus 79 ~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~----ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVAD----GENLPQLADGSYDTVVCTL 153 (252)
T ss_pred ceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeec----hhcCcccccCCeeeEEEEE
Confidence 579999999975555532 12222333333221 100111122222222 24455333 6899998855
Q ss_pred ccccccCCCCCCCcc---hhheeccccccCCcEEEEEcC----HHHHHHHH-HHHhh
Q 005959 588 LLSLESGHRHRCSTL---DIFTEIDRILRPEGWVIIRDT----ARLIESAR-ALTTR 636 (667)
Q Consensus 588 ~~~~~~~~~~~c~~~---~~l~E~dRiLRP~G~~i~~d~----~~~~~~~~-~~~~~ 636 (667)
++ |+.+ ..|=|+-|||||||.+|+=+. -+.|+++- ..++.
T Consensus 154 vL---------CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep 201 (252)
T KOG4300|consen 154 VL---------CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEP 201 (252)
T ss_pred EE---------eccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhch
Confidence 44 4444 789999999999999998543 34555443 34443
No 454
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=68.56 E-value=52 Score=34.85 Aligned_cols=103 Identities=18% Similarity=0.255 Sum_probs=62.9
Q ss_pred CCEEEEeCCCCchHHHHHhhc----CCceeEEEEecCCHHHHHHHHH---c---CCCceEEeecc----cCCCCCCCCcc
Q 005959 254 VRTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLE---R---GLPAMIGSFAS----KQLPYPSLSFD 319 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~----g~~~~sV~gvD~S~~ml~~A~e---r---gl~~~~~~~da----~~Lpfpd~sFD 319 (667)
..+.+|+|.|+-.=++.|.+. +. ...++++|+|...+....+ + ++++.-.+++. ..+| ...=-
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~-~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~R 155 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGS-LLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRR 155 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCC-cceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeE
Confidence 478999999998877777653 43 3678999999988753221 1 33333333332 2233 22222
Q ss_pred EEEe-cccccccccCH-HHHHHHHHhcccCCeEEEEEeCCCC
Q 005959 320 MLHC-ARCGVDWDQKD-GILLLEVDRVLKPGGYFVWTSPLTN 359 (667)
Q Consensus 320 lV~~-s~~ll~~~~d~-~~~L~Ei~RvLKPGG~Lvis~p~~~ 359 (667)
+.+. ...+=++.++. ..+|..+...|+||-+|++.+-..+
T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k 197 (321)
T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK 197 (321)
T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence 3222 22222333333 5699999999999999998765443
No 455
>KOG2730 consensus Methylase [General function prediction only]
Probab=68.45 E-value=5.2 Score=41.30 Aligned_cols=92 Identities=14% Similarity=0.150 Sum_probs=57.5
Q ss_pred CCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHc----CCC--ceEEeecccCC----CCCCCCccEEEe
Q 005959 254 VRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLER----GLP--AMIGSFASKQL----PYPSLSFDMLHC 323 (667)
Q Consensus 254 ~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~er----gl~--~~~~~~da~~L----pfpd~sFDlV~~ 323 (667)
...|+|.-||.|..+..++.++. .|.++|+++.-+..|+.. |++ +.|.++|...+ .+....+|+|+.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 35799999999999999988854 478999999888888765 443 45677775433 344334566665
Q ss_pred cccccccccCHHHHHHHHHhcccCCe
Q 005959 324 ARCGVDWDQKDGILLLEVDRVLKPGG 349 (667)
Q Consensus 324 s~~ll~~~~d~~~~L~Ei~RvLKPGG 349 (667)
+.- .....-...-+..+...++|.|
T Consensus 172 spp-wggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 172 SPP-WGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCC-CCCcchhhhhhhhhhhhcchhH
Confidence 532 1111112233444555555543
No 456
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=68.39 E-value=2.5 Score=45.43 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=59.4
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhH----hcccc--ccc-ccccccCCCCCCCccccccccCc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMI----LDRGF--VGV-LHDWCEAFPTYPRTYDLVHAEGL 588 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~----~~RGl--ig~-~~~~c~~f~typ~tyDl~H~~~~ 588 (667)
..|||++||.|.|+..|.+... .|+-+|.. ..+..+ -..|+ +-. ..|-.+-...-...||+|-.+-
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~-----~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dP- 248 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM-----QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNP- 248 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC-----EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECC-
Confidence 5799999999999999987322 45555543 333322 22343 001 1111111111124688887641
Q ss_pred cccccCCCCCCCcchhheeccccccCCcEEEEEcCHHHH-HHHHHHHhhCCCeeEEe
Q 005959 589 LSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTARLI-ESARALTTRLKWDARVI 644 (667)
Q Consensus 589 ~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~~~~-~~~~~~~~~~~W~~~~~ 644 (667)
.|.++...++++=.-++|++.++++-++.++ ..++.+ . -|++...
T Consensus 249 --------Pr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~~~~ 294 (315)
T PRK03522 249 --------PRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRIERV 294 (315)
T ss_pred --------CCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEEEEE
Confidence 3444443333333336899999998666554 344444 2 4665443
No 457
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=68.13 E-value=21 Score=37.84 Aligned_cols=86 Identities=21% Similarity=0.123 Sum_probs=55.3
Q ss_pred CCEEEEeCCC-CchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc
Q 005959 254 VRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 254 ~~~VLDIGCG-tG~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
..+||=+||| .|.++..+++. |.. .+..+|.++..++.+.+... . +.... ....||+|+-.-.
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~--~v~~~~~~~~rl~~a~~~~~----i--~~~~~--~~~g~Dvvid~~G----- 209 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGS--PPAVWETNPRRRDGATGYEV----L--DPEKD--PRRDYRAIYDASG----- 209 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCc--eEEEeCCCHHHHHhhhhccc----c--Chhhc--cCCCCCEEEECCC-----
Confidence 3578888987 47777777765 433 35567888777776654321 1 11110 2346899886532
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 332 QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+.+..+.|++||.+++...
T Consensus 210 --~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 --DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred --CHHHHHHHHHhhhcCcEEEEEee
Confidence 12467888899999999998754
No 458
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=67.97 E-value=46 Score=35.17 Aligned_cols=93 Identities=14% Similarity=0.058 Sum_probs=59.5
Q ss_pred CCEEEEeCC--CCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC-----CCCCCCccEEEeccc
Q 005959 254 VRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGC--GtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-----pfpd~sFDlV~~s~~ 326 (667)
..+||=.|+ |.|.++..+++.. ...+++++.+++..+.+++.|....+..-+...+ ....+.+|+|+-...
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G 216 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG 216 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC
Confidence 478888884 4788888888762 2357778888888888877775332221110011 012246898875421
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
...+.+..+.|++||.++....
T Consensus 217 --------~~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 217 --------GEFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred --------HHHHHHHHHHhCcCcEEEEecc
Confidence 2346788999999999997643
No 459
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=67.63 E-value=5.1 Score=45.54 Aligned_cols=112 Identities=24% Similarity=0.309 Sum_probs=56.1
Q ss_pred eeEEEeccccchhhhhhhhhc----CCCeEEEEeecCCCC----Cchh-hHhcccc---cccccccccCCCCCCCccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEK----GKSVWVMNVVPTIGT----NHLP-MILDRGF---VGVLHDWCEAFPTYPRTYDLV 583 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~----~~~vwvmnv~p~~~~----~~l~-~~~~RGl---ig~~~~~c~~f~typ~tyDl~ 583 (667)
--+|||+|||.|-...+-+.. +..+= |..++.. .+++ .+-+.|+ |=++|.==+-+.. |--.|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~---VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-pekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVK---VYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-PEKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESE---EEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-SS-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeE---EEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-CCceeEE
Confidence 467999999999885322211 11122 2222222 2332 2234443 5555544344433 3456766
Q ss_pred cccCccccccCCCCCCCcchhheeccccccCCcEEEEE---------cCHHHHHHHHHHHh
Q 005959 584 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIR---------DTARLIESARALTT 635 (667)
Q Consensus 584 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~---------d~~~~~~~~~~~~~ 635 (667)
=.--+-|.. ....+..+|.-.||.|+|+|.+|=+ .......++.....
T Consensus 263 VSElLGsfg----~nEl~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~~~~~~~~ 319 (448)
T PF05185_consen 263 VSELLGSFG----DNELSPECLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQEVRNWWN 319 (448)
T ss_dssp EE---BTTB----TTTSHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHHHHHHHHG
T ss_pred EEeccCCcc----ccccCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHHHHHhhcc
Confidence 543333322 2235567788899999999988811 33566777665433
No 460
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=67.53 E-value=5.8 Score=40.05 Aligned_cols=101 Identities=16% Similarity=0.086 Sum_probs=60.1
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEee-cccCC--------CCCCCCccEEEe
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSF-ASKQL--------PYPSLSFDMLHC 323 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~-da~~L--------pfpd~sFDlV~~ 323 (667)
+..+|||+||.+|+++.-..++-.+...|.++|+-. ..--.|... .++ |+.+- ..|+...|+|++
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh----~~p~~Ga~~--i~~~dvtdp~~~~ki~e~lp~r~VdvVlS 142 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH----IEPPEGATI--IQGNDVTDPETYRKIFEALPNRPVDVVLS 142 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee----ccCCCCccc--ccccccCCHHHHHHHHHhCCCCcccEEEe
Confidence 358999999999999998888744556678888632 111122211 111 22110 136678999998
Q ss_pred cccccccc----cCHH-------HHHHHHHhcccCCeEEEEEeCCCCh
Q 005959 324 ARCGVDWD----QKDG-------ILLLEVDRVLKPGGYFVWTSPLTNP 360 (667)
Q Consensus 324 s~~ll~~~----~d~~-------~~L~Ei~RvLKPGG~Lvis~p~~~~ 360 (667)
-.. ..-. .|.. .+|.-....++|+|.|+.-......
T Consensus 143 DMa-pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 143 DMA-PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred ccC-CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 643 2111 1111 2344445667899999987765443
No 461
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=66.92 E-value=22 Score=37.05 Aligned_cols=93 Identities=18% Similarity=0.137 Sum_probs=58.3
Q ss_pred CCEEEEeCCC-CchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeec----ccCCCCCCCCccEEEecccc
Q 005959 254 VRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFA----SKQLPYPSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCG-tG~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~d----a~~Lpfpd~sFDlV~~s~~l 327 (667)
..+||=+|+| .|.++..+++. |. ..|+.+|.++.-++.+++.|....+...+ ...+ .....+|+|+-.-.
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~--~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~-~~~~g~d~vid~~G- 196 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGA--ARVVAADPSPDRRELALSFGATALAEPEVLAERQGGL-QNGRGVDVALEFSG- 196 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHH-hCCCCCCEEEECCC-
Confidence 4688888886 35566666654 32 23677788888888888877533221100 0001 12235898875422
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+.+..+.|+|+|.+++...
T Consensus 197 ------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 197 ------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ------ChHHHHHHHHHhcCCCEEEEecc
Confidence 13477888999999999998764
No 462
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=66.92 E-value=25 Score=38.20 Aligned_cols=93 Identities=13% Similarity=0.052 Sum_probs=58.6
Q ss_pred CCEEEEeCCCC-chHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC-----CCCCCCccEEEeccc
Q 005959 254 VRTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGt-G~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-----pfpd~sFDlV~~s~~ 326 (667)
..+||=+|+|. |.++..+++. |. ..|+++|.++..++.+++.|....+.. ....+ ....+.+|+|+-.-.
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~--~~Vi~~~~~~~r~~~a~~~Ga~~~i~~-~~~~~~~~i~~~~~~g~d~vid~~G 268 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGA--SQVVAVDLNEDKLALARELGATATVNA-GDPNAVEQVRELTGGGVDYAFEMAG 268 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CcEEEEcCCHHHHHHHHHcCCceEeCC-CchhHHHHHHHHhCCCCCEEEECCC
Confidence 36788889863 6666666665 32 147888999999999887775332211 11110 011236899885421
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+.+..+.|++||.+++...
T Consensus 269 -------~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 269 -------SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred -------ChHHHHHHHHHHhcCCEEEEEcc
Confidence 12467788899999999987654
No 463
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=66.85 E-value=6 Score=41.23 Aligned_cols=111 Identities=24% Similarity=0.384 Sum_probs=72.0
Q ss_pred eeEEEeccccchhhhhhhhhcC-CCeEEEEeecCCCCCchhh---------HhcccccccccccccCCCCCCCccccccc
Q 005959 516 VRNVLDMNAHFGGFNSALLEKG-KSVWVMNVVPTIGTNHLPM---------ILDRGFVGVLHDWCEAFPTYPRTYDLVHA 585 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~-~~vwvmnv~p~~~~~~l~~---------~~~RGlig~~~~~c~~f~typ~tyDl~H~ 585 (667)
=|++||+|+-+|||-=.|++.+ +-|...-| +.+||-- .+||==+=.+ .+.-++. -.||+-|
T Consensus 80 ~kv~LDiGsSTGGFTd~lLq~gAk~VyavDV----G~~Ql~~kLR~d~rV~~~E~tN~r~l----~~~~~~~-~~d~~v~ 150 (245)
T COG1189 80 GKVVLDIGSSTGGFTDVLLQRGAKHVYAVDV----GYGQLHWKLRNDPRVIVLERTNVRYL----TPEDFTE-KPDLIVI 150 (245)
T ss_pred CCEEEEecCCCccHHHHHHHcCCcEEEEEEc----cCCccCHhHhcCCcEEEEecCChhhC----CHHHccc-CCCeEEE
Confidence 4899999999999999999842 22333322 2366642 2332100000 1111111 3577777
Q ss_pred cCccccccCCCCCCCcchhheeccccccCCcEEEE-------------------EcC---HHHHHHHHHHHhhCCCeeEE
Q 005959 586 EGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVII-------------------RDT---ARLIESARALTTRLKWDARV 643 (667)
Q Consensus 586 ~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~-------------------~d~---~~~~~~~~~~~~~~~W~~~~ 643 (667)
+--|...+ .||-.+..+|-|+|-++. +|. ..+++++.+.++.+.|.+.-
T Consensus 151 DvSFISL~---------~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~g 221 (245)
T COG1189 151 DVSFISLK---------LILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKG 221 (245)
T ss_pred EeehhhHH---------HHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEee
Confidence 77676554 588899999999998884 333 47789999999999999775
Q ss_pred e
Q 005959 644 I 644 (667)
Q Consensus 644 ~ 644 (667)
.
T Consensus 222 l 222 (245)
T COG1189 222 L 222 (245)
T ss_pred e
Confidence 4
No 464
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=66.45 E-value=25 Score=37.43 Aligned_cols=94 Identities=16% Similarity=0.118 Sum_probs=57.8
Q ss_pred CCEEEEeCCC-CchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeec--ccCC-CC-CCCCccEEEecccc
Q 005959 254 VRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFA--SKQL-PY-PSLSFDMLHCARCG 327 (667)
Q Consensus 254 ~~~VLDIGCG-tG~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~d--a~~L-pf-pd~sFDlV~~s~~l 327 (667)
..+||=+|+| .|.++..+++. |.. .++.++.+++..+.+++.|....+..-+ ...+ .. ....||+|+-...
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~--~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g- 240 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAE--DVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSG- 240 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCC-
Confidence 4788888876 35555666654 322 3778899988888888777533221111 0011 01 2336999985422
Q ss_pred cccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 328 VDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 328 l~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+.+..+.|+++|.+++...
T Consensus 241 ------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 241 ------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 12356777889999999997654
No 465
>PRK13699 putative methylase; Provisional
Probab=66.39 E-value=6.2 Score=40.65 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=0.0
Q ss_pred cchhheeccccccCCcEEEEEcCHHHHHHHHHHHhhCCCeeEEeeeccCCCccEEEEEcc
Q 005959 601 TLDIFTEIDRILRPEGWVIIRDTARLIESARALTTRLKWDARVIEIESNSDERLLICQKP 660 (667)
Q Consensus 601 ~~~~l~E~dRiLRP~G~~i~~d~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~li~~K~ 660 (667)
+..++-|+-|||+|||++++--....+..+..+.....|.+.-. +||.|+
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~l~~~----------IiW~K~ 100 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGH----------LVFTKN 100 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCEEeeE----------EEEECC
No 466
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=65.71 E-value=31 Score=35.28 Aligned_cols=93 Identities=15% Similarity=0.090 Sum_probs=57.4
Q ss_pred CCCEEEEeCCCC-chHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 253 GVRTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 253 ~~~~VLDIGCGt-G~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
...+||-.|||. |..+..+++. |.. .+++++.+++..+.+++.+....+.... ... .....+|+|+....
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~--~vi~~~~~~~~~~~~~~~g~~~~~~~~~-~~~-~~~~~~d~vl~~~~---- 168 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAR--EVVGVDPDAARRELAEALGPADPVAADT-ADE-IGGRGADVVIEASG---- 168 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCC--cEEEECCCHHHHHHHHHcCCCccccccc-hhh-hcCCCCCEEEEccC----
Confidence 347788888764 5566666655 322 2788898888888888776211111111 011 13346899885421
Q ss_pred ccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 331 DQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 331 ~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+.+..+.|+++|.++....
T Consensus 169 ---~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 169 ---SPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred ---ChHHHHHHHHHhcCCcEEEEEec
Confidence 12467788999999999987644
No 467
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=62.52 E-value=19 Score=40.10 Aligned_cols=40 Identities=23% Similarity=0.401 Sum_probs=31.7
Q ss_pred CCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHH
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLT 294 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A 294 (667)
+...|+|+|.|.|.++..|.-.. ..+|.++|.|....+.|
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra 192 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERA 192 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHH
Confidence 45789999999999999987552 46789999997665544
No 468
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=62.39 E-value=56 Score=35.37 Aligned_cols=94 Identities=14% Similarity=0.082 Sum_probs=60.1
Q ss_pred CCCEEEEeCC--CCchHHHHHhhcCCceeEEEEecCCHHHHHHHH-HcCCCceEEeecccCC-----CCCCCCccEEEec
Q 005959 253 GVRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTL-ERGLPAMIGSFASKQL-----PYPSLSFDMLHCA 324 (667)
Q Consensus 253 ~~~~VLDIGC--GtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~-ergl~~~~~~~da~~L-----pfpd~sFDlV~~s 324 (667)
.+.+||=.|+ |.|.++..+++.- ...+++++.++...+.++ +.|....+..-+...+ ....+.+|+|+-.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~ 235 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDN 235 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEEC
Confidence 3478999997 3788888888762 235778888888888776 5565332221100011 0112468988754
Q ss_pred ccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 325 RCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 325 ~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
-. ...+.+..+.|++||.+++...
T Consensus 236 vG--------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 236 VG--------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred CC--------HHHHHHHHHHhccCCEEEEECc
Confidence 21 2467888999999999997654
No 469
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=62.37 E-value=43 Score=35.48 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=57.9
Q ss_pred CCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccC----C--CCCCCCccEEEeccc
Q 005959 254 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQ----L--PYPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~----L--pfpd~sFDlV~~s~~ 326 (667)
..+||-.|+|. |..+..+++. ....++.+..+++..+.+++.+....+ ...... + -.++..+|+++....
T Consensus 160 g~~vLI~g~g~vG~~a~~lA~~--~g~~v~~~~~s~~~~~~~~~~g~~~v~-~~~~~~~~~~l~~~~~~~~vd~vld~~g 236 (337)
T cd08261 160 GDTVLVVGAGPIGLGVIQVAKA--RGARVIVVDIDDERLEFARELGADDTI-NVGDEDVAARLRELTDGEGADVVIDATG 236 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCeEEEECCCHHHHHHHHHhCCCEEe-cCcccCHHHHHHHHhCCCCCCEEEECCC
Confidence 46889898763 6677777765 124466777778888877666632222 111111 1 013346899986522
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+.++.+.|+++|.++....
T Consensus 237 -------~~~~~~~~~~~l~~~G~~i~~g~ 259 (337)
T cd08261 237 -------NPASMEEAVELVAHGGRVVLVGL 259 (337)
T ss_pred -------CHHHHHHHHHHHhcCCEEEEEcC
Confidence 13467888999999999886543
No 470
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=62.04 E-value=8.6 Score=44.04 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=54.2
Q ss_pred EEEeccccchhhhhhhhhc--CCCeEEEEeecCCCC-C---chhhHhcc-cccc--cc-cccccCCCCCCCcccccc---
Q 005959 518 NVLDMNAHFGGFNSALLEK--GKSVWVMNVVPTIGT-N---HLPMILDR-GFVG--VL-HDWCEAFPTYPRTYDLVH--- 584 (667)
Q Consensus 518 ~vlDm~~~~g~faa~l~~~--~~~vwvmnv~p~~~~-~---~l~~~~~R-Glig--~~-~~~c~~f~typ~tyDl~H--- 584 (667)
.||||.|+-||=..+|.+. +.. .|+-.|-+ + .|.--++| |+-- +. .|=+..-..+|.+||.|-
T Consensus 116 ~VLD~CAAPGgKTt~la~~l~~~g----~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 116 RVLDMAAAPGSKTTQIAALMNNQG----AIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred EEEEeCCCccHHHHHHHHHcCCCC----EEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 6999999999977776652 112 23444433 3 33333445 4421 11 121111124467899998
Q ss_pred -ccCccccccCC--CCCCC---c-------chhheeccccccCCcEEEEE
Q 005959 585 -AEGLLSLESGH--RHRCS---T-------LDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 585 -~~~~~~~~~~~--~~~c~---~-------~~~l~E~dRiLRP~G~~i~~ 621 (667)
||+....-+.. ..+-+ + ..||-..=+.|||||.+|.+
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 66553221100 00000 0 16677778899999999987
No 471
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=61.98 E-value=7.5 Score=40.34 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=20.4
Q ss_pred eeEEEeccccchhhhhhhhhcCCC
Q 005959 516 VRNVLDMNAHFGGFNSALLEKGKS 539 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~~~~ 539 (667)
-.+|||+|||.|.+...|.+....
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~~ 53 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAKK 53 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCc
Confidence 468999999999999999985443
No 472
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=61.27 E-value=76 Score=35.26 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=59.4
Q ss_pred CEEEEeCCCCch----HHHHHhhc--CCceeEEEEecC----CHHHH--------HHHHHcCCCceEEeecc---cC---
Q 005959 255 RTILDIGCGYGS----FGAHLFSK--ELLTMCIANYEA----SGSQV--------QLTLERGLPAMIGSFAS---KQ--- 310 (667)
Q Consensus 255 ~~VLDIGCGtG~----~t~~La~~--g~~~~sV~gvD~----S~~ml--------~~A~ergl~~~~~~~da---~~--- 310 (667)
-.|+|+|.|.|. +...|+.+ |.+...||+++. +...+ ++|+..|++..|..... +.
T Consensus 112 vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~ 191 (374)
T PF03514_consen 112 VHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDP 191 (374)
T ss_pred eEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCH
Confidence 579999999995 45555554 567889999999 55554 45556688877754322 22
Q ss_pred --CCCCCCCccEEEecccccccc------cCHHHHHHHHHhcccCCeEEEEE
Q 005959 311 --LPYPSLSFDMLHCARCGVDWD------QKDGILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 311 --Lpfpd~sFDlV~~s~~ll~~~------~d~~~~L~Ei~RvLKPGG~Lvis 354 (667)
+...++..=+|-|.+.+++.. +++...+-...|.|+|.-..++.
T Consensus 192 ~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 192 SMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred HHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 222333333444554434433 12234566677789998554443
No 473
>PTZ00357 methyltransferase; Provisional
Probab=60.51 E-value=41 Score=40.25 Aligned_cols=95 Identities=14% Similarity=0.118 Sum_probs=60.9
Q ss_pred CEEEEeCCCCchHHHHHhhc----CCceeEEEEecCCHHHHHHHHHc--------------CCCceEEeecccCCCCC--
Q 005959 255 RTILDIGCGYGSFGAHLFSK----ELLTMCIANYEASGSQVQLTLER--------------GLPAMIGSFASKQLPYP-- 314 (667)
Q Consensus 255 ~~VLDIGCGtG~~t~~La~~----g~~~~sV~gvD~S~~ml~~A~er--------------gl~~~~~~~da~~Lpfp-- 314 (667)
-.|+=+|+|-|-+....++. +. .+.|.+++-++..+.+.+.+ |-.+.++..|+..+..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gv-kVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~ 780 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGV-RLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAE 780 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCC-cEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccc
Confidence 36899999999876554432 43 56899999985533222221 11256677787776433
Q ss_pred ---------CCCccEEEecccccccccCH--HHHHHHHHhcccC----CeEE
Q 005959 315 ---------SLSFDMLHCARCGVDWDQKD--GILLLEVDRVLKP----GGYF 351 (667)
Q Consensus 315 ---------d~sFDlV~~s~~ll~~~~d~--~~~L~Ei~RvLKP----GG~L 351 (667)
-+.+|+|++... =.+.++. ...|.-+.+.||+ +|++
T Consensus 781 ~~s~~~P~~~gKaDIVVSELL-GSFGDNELSPECLDGaQrfLKdiqhsdGIl 831 (1072)
T PTZ00357 781 NGSLTLPADFGLCDLIVSELL-GSLGDNELSPECLEAFHAQLEDIQLSRGIA 831 (1072)
T ss_pred cccccccccccccceehHhhh-cccccccCCHHHHHHHHHhhhhhccccccc
Confidence 137999998632 3344443 4688888888887 7763
No 474
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=60.48 E-value=7 Score=41.20 Aligned_cols=38 Identities=24% Similarity=0.463 Sum_probs=25.6
Q ss_pred eEEEeccccchhhhhhhhhcCCCeEEEEeecCCCC-CchhhHhc
Q 005959 517 RNVLDMNAHFGGFNSALLEKGKSVWVMNVVPTIGT-NHLPMILD 559 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~~~~vwvmnv~p~~~~-~~l~~~~~ 559 (667)
.+|||+|||.|.++.+|++... .|+-+|-. .-+..+-+
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~~-----~v~avE~d~~~~~~~~~ 82 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERAA-----KVTAVEIDRDLAPILAE 82 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhCC-----cEEEEECCHHHHHHHHH
Confidence 4799999999999999997432 34444443 44444433
No 475
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=59.93 E-value=5.1 Score=41.20 Aligned_cols=125 Identities=21% Similarity=0.289 Sum_probs=65.0
Q ss_pred CceeEEEeccccchhhhhhhhhcCCCeE-EEE-eecCCCC-CchhhHhc--ccccccc-----cccccCCCCCCCccccc
Q 005959 514 NMVRNVLDMNAHFGGFNSALLEKGKSVW-VMN-VVPTIGT-NHLPMILD--RGFVGVL-----HDWCEAFPTYPRTYDLV 583 (667)
Q Consensus 514 ~~~R~vlDm~~~~g~faa~l~~~~~~vw-vmn-v~p~~~~-~~l~~~~~--RGlig~~-----~~~c~~f~typ~tyDl~ 583 (667)
.....+||.|||.|=..-.|+- ++- .+- |=|.... ++.+--+. .+-+|.+ .+|- |. +.+||+|
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl---~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~---P~-~~~YDlI 126 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLL---PVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFT---PE-EGKYDLI 126 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCC---CC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG--------TT-EEEE
T ss_pred CCcceEEecccccchhHHHHHH---HhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhcc---CC-CCcEeEE
Confidence 4688999999999999887774 221 111 2222221 33321111 2222222 2332 22 4799999
Q ss_pred cccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH----------------HHHHHHHHHHhhCCCeeEEeeec
Q 005959 584 HAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA----------------RLIESARALTTRLKWDARVIEIE 647 (667)
Q Consensus 584 H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~----------------~~~~~~~~~~~~~~W~~~~~~~~ 647 (667)
=+--|..+.+. ..+...|.-.=.-|+|+|.+|+.++. ..-+..+.|-+.=-.+++..+..
T Consensus 127 W~QW~lghLTD----~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 127 WIQWCLGHLTD----EDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp EEES-GGGS-H----HHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEEEE-
T ss_pred EehHhhccCCH----HHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEeccc
Confidence 99888776652 33445555566679999999997543 12455666666666666655444
Q ss_pred cC
Q 005959 648 SN 649 (667)
Q Consensus 648 ~~ 649 (667)
.+
T Consensus 203 ~~ 204 (218)
T PF05891_consen 203 KG 204 (218)
T ss_dssp TT
T ss_pred cC
Confidence 33
No 476
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=59.92 E-value=2.7 Score=42.45 Aligned_cols=54 Identities=15% Similarity=0.313 Sum_probs=31.0
Q ss_pred ccccccCCCCCCCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH
Q 005959 566 LHDWCEAFPTYPRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 624 (667)
Q Consensus 566 ~~~~c~~f~typ~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 624 (667)
.|+-++ .+..+.-||+|-|-.++.-.+ .-.-..|+=-+-+.|+||||+++-...
T Consensus 124 ~~NL~~-~~~~~~~fD~I~CRNVlIYF~----~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 124 RHNLLD-PDPPFGRFDLIFCRNVLIYFD----PETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp E--TT--S------EEEEEE-SSGGGS-----HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred ecccCC-CCcccCCccEEEecCEEEEeC----HHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 355556 344468999999999987654 122235777788999999999997654
No 477
>TIGR02054 MerD mercuric resistence transcriptional repressor protein MerD. This model represents a transcriptional repressor protein of the MerR family (pfam00376) whose expression is regulated by the mercury-sensitive transcriptional activator, MerR. MerD has been shown to repress the transcription of the mer operon.
Probab=59.73 E-value=5 Score=37.45 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=27.6
Q ss_pred ccccccchhhHhHHHHhhhhhccCCCCcCCcccCc
Q 005959 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCS 129 (667)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~ 129 (667)
.+|||.|++.++.++..|..+...|. ++++..
T Consensus 36 ~~gyR~Y~~~~l~rL~~I~~lr~~G~---~L~eI~ 67 (120)
T TIGR02054 36 TSGYGIFDDASLQRLRFVRAAFEAGI---GLGELA 67 (120)
T ss_pred CCCCeeCCHHHHHHHHHHHHHHHcCC---CHHHHH
Confidence 48999999999999999999988888 555554
No 478
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=59.72 E-value=32 Score=35.92 Aligned_cols=82 Identities=22% Similarity=0.197 Sum_probs=44.0
Q ss_pred HHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHH-------HHHcC-C------Cc
Q 005959 236 QIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQL-------TLERG-L------PA 301 (667)
Q Consensus 236 ~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~-------A~erg-l------~~ 301 (667)
.+.+...+..+ ...+|||.=+|-|.-+..++..|. .|++++-|+.+... +.+.. . .+
T Consensus 64 ~l~kA~Glk~~------~~~~VLDaTaGLG~Da~vlA~~G~---~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri 134 (234)
T PF04445_consen 64 PLAKAVGLKPG------MRPSVLDATAGLGRDAFVLASLGC---KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRI 134 (234)
T ss_dssp HHHHHTT-BTT------B---EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHE
T ss_pred HHHHHhCCCCC------CCCEEEECCCcchHHHHHHHccCC---eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCC
Confidence 45555554443 234899999999999999987764 58999999865422 22211 1 22
Q ss_pred eEEeecccC-CCCCCCCccEEEeccc
Q 005959 302 MIGSFASKQ-LPYPSLSFDMLHCARC 326 (667)
Q Consensus 302 ~~~~~da~~-Lpfpd~sFDlV~~s~~ 326 (667)
.+..+|... |..++++||+|+.--.
T Consensus 135 ~l~~~d~~~~L~~~~~s~DVVY~DPM 160 (234)
T PF04445_consen 135 QLIHGDALEYLRQPDNSFDVVYFDPM 160 (234)
T ss_dssp EEEES-CCCHCCCHSS--SEEEE--S
T ss_pred EEEcCCHHHHHhhcCCCCCEEEECCC
Confidence 344455433 5567889999998755
No 479
>COG0789 SoxR Predicted transcriptional regulators [Transcription]
Probab=59.46 E-value=4.8 Score=36.80 Aligned_cols=32 Identities=22% Similarity=0.081 Sum_probs=26.8
Q ss_pred cccccchhhHhHHHHhhhhhccCCCCcCCcccCcc
Q 005959 96 HGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (667)
Q Consensus 96 ~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (667)
+|||.|+++|++++..|..+..-|. +++++..
T Consensus 34 ~gyR~Ys~~dl~~l~~I~~~r~~G~---~L~~I~~ 65 (124)
T COG0789 34 GGYRYYTPEDLELLQIIKTLRELGF---SLAEIKE 65 (124)
T ss_pred CCceecCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 8999999999999999998885456 5666665
No 480
>PRK13749 transcriptional regulator MerD; Provisional
Probab=58.85 E-value=4.9 Score=37.62 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=27.2
Q ss_pred ccccccchhhHhHHHHhhhhhccCCCCcCCcccCcc
Q 005959 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (667)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (667)
.+|||.|++.+++++..|..+..-|. +++++..
T Consensus 36 ~~gyR~Y~~~~l~rL~~I~~~r~~G~---sL~eI~~ 68 (121)
T PRK13749 36 TGGYGLFDDAALQRLCFVRAAFEAGI---GLDALAR 68 (121)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 48999999999999999998766667 5666653
No 481
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=58.70 E-value=42 Score=35.86 Aligned_cols=90 Identities=21% Similarity=0.196 Sum_probs=61.5
Q ss_pred CEEEEeCCC--CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 255 RTILDIGCG--YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 255 ~~VLDIGCG--tG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
.+|+=+|.| -|+++..|.+.|. ...+++.|.+...++.+.+.++........ .--.....|+|+.+-- ..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~-~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~---~~~~~~~aD~VivavP----i~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGL-VVRIIGRDRSAATLKAALELGVIDELTVAG---LAEAAAEADLVIVAVP----IE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCC-eEEEEeecCcHHHHHHHhhcCcccccccch---hhhhcccCCEEEEecc----HH
Confidence 567888877 4677777777774 567899999999999998877544322111 0112346899987621 12
Q ss_pred CHHHHHHHHHhcccCCeEEE
Q 005959 333 KDGILLLEVDRVLKPGGYFV 352 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lv 352 (667)
....+++++...|++|..+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHHHHHhcccCCCCCEEE
Confidence 34578999999999987654
No 482
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=58.41 E-value=44 Score=35.97 Aligned_cols=94 Identities=10% Similarity=0.108 Sum_probs=56.9
Q ss_pred CCEEEEeCCCC-chHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecc--cCC----C-C-CCCCcc----E
Q 005959 254 VRTILDIGCGY-GSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS--KQL----P-Y-PSLSFD----M 320 (667)
Q Consensus 254 ~~~VLDIGCGt-G~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da--~~L----p-f-pd~sFD----l 320 (667)
..+||=+|||. |..+..+++.. ...++.+|.+++.++.+++.|....+...+. ..+ . + ....+| +
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~ 244 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWK 244 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCE
Confidence 47899999964 66666666652 2357888999999999887775332211110 000 0 0 112344 4
Q ss_pred EEecccccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 321 LHCARCGVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 321 V~~s~~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
|+-.-. ....+....+.|++||.+++...
T Consensus 245 v~d~~g-------~~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 245 IFECSG-------SKPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred EEECCC-------ChHHHHHHHHHHhcCCeEEEECc
Confidence 542211 12467778889999999998765
No 483
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=57.97 E-value=3.4 Score=44.26 Aligned_cols=44 Identities=14% Similarity=0.392 Sum_probs=34.8
Q ss_pred CCccccccccCccccccCCCCCCCcchhheeccccccCCcEEEEEcCH
Q 005959 577 PRTYDLVHAEGLLSLESGHRHRCSTLDIFTEIDRILRPEGWVIIRDTA 624 (667)
Q Consensus 577 p~tyDl~H~~~~~~~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~d~~ 624 (667)
+..||+|.|-.+|.... .-.-..++-.+-+.|+|||++++-...
T Consensus 221 ~~~fD~I~cRNvliyF~----~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFD----KTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred CCCcceeeHhhHHhcCC----HHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 37899999999987653 123347889999999999999987654
No 484
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=57.78 E-value=22 Score=31.60 Aligned_cols=72 Identities=21% Similarity=0.155 Sum_probs=45.8
Q ss_pred eCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccCHHHHHH
Q 005959 260 IGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLL 339 (667)
Q Consensus 260 IGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~ 339 (667)
+-||.|..|..+++. +-+.+.++|++..+...+.....-....+|+|+++ +.....+.
T Consensus 4 ~~Cg~G~sTS~~~~k---------------i~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~-------Pqv~~~~~ 61 (96)
T cd05564 4 LVCSAGMSTSILVKK---------------MKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLG-------PQVRYMLD 61 (96)
T ss_pred EEcCCCchHHHHHHH---------------HHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEC-------hhHHHHHH
Confidence 458999887766543 45667788888777666655554233569999876 23345667
Q ss_pred HHHhcccCCeEEEE
Q 005959 340 EVDRVLKPGGYFVW 353 (667)
Q Consensus 340 Ei~RvLKPGG~Lvi 353 (667)
++.+...+.+.-+.
T Consensus 62 ~i~~~~~~~~~pv~ 75 (96)
T cd05564 62 EVKKKAAEYGIPVA 75 (96)
T ss_pred HHHHHhccCCCcEE
Confidence 77765555444333
No 485
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=57.74 E-value=45 Score=37.67 Aligned_cols=87 Identities=13% Similarity=0.062 Sum_probs=57.1
Q ss_pred CCCEEEEeCCCC-chHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccc
Q 005959 253 GVRTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDW 330 (667)
Q Consensus 253 ~~~~VLDIGCGt-G~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~ 330 (667)
.+++|+=+|+|. |.....+++. | +.|+.+|.++.-.+.|++.|.... ... +.+ ..+|+|+..-.
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~G---a~ViV~d~d~~R~~~A~~~G~~~~--~~~-e~v----~~aDVVI~atG---- 266 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQG---ARVIVTEVDPICALQAAMEGYEVM--TME-EAV----KEGDIFVTTTG---- 266 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CEEEEEECChhhHHHHHhcCCEEc--cHH-HHH----cCCCEEEECCC----
Confidence 358999999995 6665555543 4 357778998888888887764221 111 111 35799987522
Q ss_pred ccCHHHHHH-HHHhcccCCeEEEEEeC
Q 005959 331 DQKDGILLL-EVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 331 ~~d~~~~L~-Ei~RvLKPGG~Lvis~p 356 (667)
.. .++. +..+.+|+||+++....
T Consensus 267 --~~-~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 267 --NK-DIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred --CH-HHHHHHHHhcCCCCcEEEEeCC
Confidence 22 3444 45889999999988764
No 486
>PLN02740 Alcohol dehydrogenase-like
Probab=57.69 E-value=42 Score=36.72 Aligned_cols=94 Identities=16% Similarity=0.051 Sum_probs=58.2
Q ss_pred CCEEEEeCCC-CchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeeccc-CC-----CCCCCCccEEEecc
Q 005959 254 VRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASK-QL-----PYPSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCG-tG~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~-~L-----pfpd~sFDlV~~s~ 325 (667)
..+||=+|+| .|.++..+++. |. ..|+++|.+++.++.+++.|....+..-+.. .+ .+..+.||+|+-.-
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~--~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~ 276 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGA--SKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA 276 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--CcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence 4789999986 35566666655 32 2478889999999999887754322111100 00 01122699987652
Q ss_pred cccccccCHHHHHHHHHhcccCC-eEEEEEeC
Q 005959 326 CGVDWDQKDGILLLEVDRVLKPG-GYFVWTSP 356 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPG-G~Lvis~p 356 (667)
. ....+.+....+++| |.+++...
T Consensus 277 G-------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 277 G-------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred C-------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 2 124677778889997 99887654
No 487
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=57.49 E-value=31 Score=37.53 Aligned_cols=94 Identities=12% Similarity=0.044 Sum_probs=52.2
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHH-HHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccc
Q 005959 254 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQ-VQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWD 331 (667)
Q Consensus 254 ~~~VLDIGCG-tG~~t~~La~~g~~~~sV~gvD~S~~m-l~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~ 331 (667)
..+||=.|+| .|.++..+++.- ...++.++.+... .+.+++.|....+..-+...+.-..+.+|+|+-...
T Consensus 184 g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g----- 256 (360)
T PLN02586 184 GKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVS----- 256 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCC-----
Confidence 3678889987 466666676652 2335556655443 344455564322211110011000124888875421
Q ss_pred cCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 332 QKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 332 ~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+.+..+.|++||.++....
T Consensus 257 --~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 257 --AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred --CHHHHHHHHHHhcCCcEEEEeCC
Confidence 12467788899999999997653
No 488
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=56.92 E-value=13 Score=38.45 Aligned_cols=97 Identities=19% Similarity=0.239 Sum_probs=69.7
Q ss_pred eEEEeccccchhhhhhhhhc---CCCeEEEEeecCCCCCchhhHhccc-ccccccccccCCCCCCCccccc--cccCccc
Q 005959 517 RNVLDMNAHFGGFNSALLEK---GKSVWVMNVVPTIGTNHLPMILDRG-FVGVLHDWCEAFPTYPRTYDLV--HAEGLLS 590 (667)
Q Consensus 517 R~vlDm~~~~g~faa~l~~~---~~~vwvmnv~p~~~~~~l~~~~~RG-lig~~~~~c~~f~typ~tyDl~--H~~~~~~ 590 (667)
-.||-.||..|+...++.|. +-.|...-+.|....+-+.++-.|= +|.++.|=+ +|-.|-++ ..+-+|.
T Consensus 75 skVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr-----~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 75 SKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDAR-----HPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp -EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TT-----SGGGGTTTS--EEEEEE
T ss_pred CEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCC-----ChHHhhcccccccEEEe
Confidence 37999999999998888753 2368888888888888888888887 889998865 44444333 2333455
Q ss_pred cccCCCCCCCcchhheeccccccCCcEEEEE
Q 005959 591 LESGHRHRCSTLDIFTEIDRILRPEGWVIIR 621 (667)
Q Consensus 591 ~~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~ 621 (667)
... .+-....+++=++.-|++||+++|.
T Consensus 150 DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 150 DVA---QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp E-S---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCC---ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 544 4455567888899999999999984
No 489
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=56.84 E-value=22 Score=39.39 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=34.6
Q ss_pred CCCEEEEeCCCCchHHHHHhhcC-------CceeEEEEecCCHHHHHHHHHc
Q 005959 253 GVRTILDIGCGYGSFGAHLFSKE-------LLTMCIANYEASGSQVQLTLER 297 (667)
Q Consensus 253 ~~~~VLDIGCGtG~~t~~La~~g-------~~~~sV~gvD~S~~ml~~A~er 297 (667)
.+..++|||.|+|.++..+++.. +...++.-++.|++..+.-++.
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~ 128 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKET 128 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHH
Confidence 34689999999999998887641 3467889999999987655443
No 490
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=56.56 E-value=1.5 Score=39.08 Aligned_cols=33 Identities=18% Similarity=0.042 Sum_probs=27.1
Q ss_pred ccccccchhhHhHHHHhhhhhccCCCCcCCcccCcc
Q 005959 95 YHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (667)
Q Consensus 95 ~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (667)
.+|||.|++.++.++..|..+..-|. ++++...
T Consensus 33 ~~gyR~Y~~~~~~~l~~I~~lr~~G~---~l~eI~~ 65 (97)
T cd04782 33 ENGYRYYTLEQFEQLDIILLLKELGI---SLKEIKD 65 (97)
T ss_pred CCCCccCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 37999999999999999999988777 5554443
No 491
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=56.27 E-value=67 Score=34.92 Aligned_cols=73 Identities=12% Similarity=0.101 Sum_probs=49.0
Q ss_pred hhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC
Q 005959 232 DYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL 311 (667)
Q Consensus 232 ~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L 311 (667)
-+.+++.+.+...++ ...+|.=-|.|..+..+++.... ..++++|-++.+++.|+++-.
T Consensus 7 Vll~Evl~~L~~~~~--------g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~------------ 65 (310)
T PF01795_consen 7 VLLKEVLEALNPKPG--------GIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLK------------ 65 (310)
T ss_dssp TTHHHHHHHHT--TT---------EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTC------------
T ss_pred ccHHHHHHhhCcCCC--------ceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHh------------
Confidence 345566666664444 78999999999999999987433 789999999999999976431
Q ss_pred CCCCCCccEEEeccc
Q 005959 312 PYPSLSFDMLHCARC 326 (667)
Q Consensus 312 pfpd~sFDlV~~s~~ 326 (667)
++ ++.|.+++.++.
T Consensus 66 ~~-~~r~~~~~~~F~ 79 (310)
T PF01795_consen 66 KF-DDRFIFIHGNFS 79 (310)
T ss_dssp CC-CTTEEEEES-GG
T ss_pred hc-cceEEEEeccHH
Confidence 12 457888887754
No 492
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=56.19 E-value=52 Score=35.69 Aligned_cols=61 Identities=11% Similarity=0.149 Sum_probs=48.2
Q ss_pred hhhhHHHHHHHHhccccccccccCCCEEEEeCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcC
Q 005959 230 VEDYSHQIAEMIGLRNESNFILAGVRTILDIGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERG 298 (667)
Q Consensus 230 ~~~y~~~l~~~L~l~~g~~l~~~~~~~VLDIGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~erg 298 (667)
..-+.++..+.+...++ ...+|.=-|.|..+..+++.......++++|-++.+++.|+++-
T Consensus 8 ipVLl~E~i~~L~~~~~--------giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l 68 (314)
T COG0275 8 IPVLLNEVVELLAPKPD--------GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERL 68 (314)
T ss_pred cchHHHHHHHhcccCCC--------cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHh
Confidence 34455566666665444 78999999999999999998655567999999999999998763
No 493
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=55.82 E-value=52 Score=35.17 Aligned_cols=94 Identities=13% Similarity=0.135 Sum_probs=56.0
Q ss_pred CCEEEEeCCCC-chHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeecc--cCC--CCCCCCcc-EEEeccc
Q 005959 254 VRTILDIGCGY-GSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFAS--KQL--PYPSLSFD-MLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGCGt-G~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da--~~L--pfpd~sFD-lV~~s~~ 326 (667)
..+||=+|+|. |.++..+++. |. ..++.++.+++.++.+++.|....+..-.. ..+ -.....+| +|+-.-.
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~G~--~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G 238 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVALGA--KSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAG 238 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCC
Confidence 47888888863 5555666654 32 236778888888888877664322211000 000 01223577 5543211
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEeC
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~p 356 (667)
....+.+..+.|++||.+++...
T Consensus 239 -------~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 239 -------VPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred -------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 13578888999999999998764
No 494
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=55.70 E-value=62 Score=34.26 Aligned_cols=92 Identities=17% Similarity=0.141 Sum_probs=55.1
Q ss_pred CCEEEEeCCC-CchHHHHHhhc-CCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC------CCCCCCccEEEecc
Q 005959 254 VRTILDIGCG-YGSFGAHLFSK-ELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL------PYPSLSFDMLHCAR 325 (667)
Q Consensus 254 ~~~VLDIGCG-tG~~t~~La~~-g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L------pfpd~sFDlV~~s~ 325 (667)
..+||-.|+| .|..+..+++. |. ..++.++.++...+.+++.+....+. .....+ -.+.+.||+|+-..
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~--~~v~~~~~~~~~~~~~~~~g~~~vi~-~~~~~~~~~i~~~~~~~~~d~vld~~ 244 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGA--ARIIAVDSNPERLDLAKEAGATDIIN-PKNGDIVEQILELTGGRGVDCVIEAV 244 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC--CEEEEEeCCHHHHHHHHHhCCcEEEc-CCcchHHHHHHHHcCCCCCcEEEEcc
Confidence 4678887775 36666666665 32 24666677777777777655322111 111110 01335799988542
Q ss_pred cccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 326 CGVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 326 ~ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
. ....+.+..+.|+++|.++...
T Consensus 245 g-------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 245 G-------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred C-------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1 1247888899999999988664
No 495
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=55.46 E-value=5.4 Score=37.59 Aligned_cols=34 Identities=26% Similarity=0.115 Sum_probs=28.6
Q ss_pred cccccccchhhHhHHHHhhhhhccCCCCcCCcccCcc
Q 005959 94 IYHGYRRLQEQLVSDLWDIGEISLGSSRSKDLEFCSE 130 (667)
Q Consensus 94 ~~~~yr~~~~~~~~~~~~~~~~~~g~~~~~~~~~C~~ 130 (667)
..+|||.|++.++.++..|+.+..-|. ++++...
T Consensus 32 ~~~gyR~Y~~~~~~~l~~I~~lr~~G~---sL~eI~~ 65 (133)
T cd04787 32 PVNGYRLYSEKDLSRLRFILSARQLGF---SLKDIKE 65 (133)
T ss_pred CCCCeeeCCHHHHHHHHHHHHHHHcCC---CHHHHHH
Confidence 348999999999999999999998888 6666443
No 496
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=54.99 E-value=8.8 Score=40.07 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=18.9
Q ss_pred eeEEEeccccchhhhhhhhhc
Q 005959 516 VRNVLDMNAHFGGFNSALLEK 536 (667)
Q Consensus 516 ~R~vlDm~~~~g~faa~l~~~ 536 (667)
-.+|+|+|||.|.+...|.+.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~ 50 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKR 50 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHh
Confidence 368999999999999999974
No 497
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=54.85 E-value=91 Score=32.65 Aligned_cols=91 Identities=15% Similarity=0.084 Sum_probs=58.9
Q ss_pred CCEEEEeCC--CCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCC-----CCCCCCccEEEeccc
Q 005959 254 VRTILDIGC--GYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQL-----PYPSLSFDMLHCARC 326 (667)
Q Consensus 254 ~~~VLDIGC--GtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~L-----pfpd~sFDlV~~s~~ 326 (667)
+.+||=.|+ |.|.++..+++.. ...+++++.+++..+.+++.|....+.. ....+ ....+.+|+|+-...
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~~Ga~~vi~~-~~~~~~~~v~~~~~~gvd~vld~~g 220 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKELGFDAVFNY-KTVSLEEALKEAAPDGIDCYFDNVG 220 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHcCCCEEEeC-CCccHHHHHHHHCCCCcEEEEECCC
Confidence 478888874 5677877777762 2357788888888888887775332221 11111 012246898885422
Q ss_pred ccccccCHHHHHHHHHhcccCCeEEEEEe
Q 005959 327 GVDWDQKDGILLLEVDRVLKPGGYFVWTS 355 (667)
Q Consensus 327 ll~~~~d~~~~L~Ei~RvLKPGG~Lvis~ 355 (667)
...+.+..+.|+++|.++...
T Consensus 221 --------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 221 --------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred --------HHHHHHHHHhhccCCEEEEEc
Confidence 246788999999999998764
No 498
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=54.76 E-value=6.6 Score=42.72 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=36.1
Q ss_pred cccccccCcccc-ccCCCCCCCcchhheeccccccCCcEEEEE--cCHHHHHHHHHH
Q 005959 580 YDLVHAEGLLSL-ESGHRHRCSTLDIFTEIDRILRPEGWVIIR--DTARLIESARAL 633 (667)
Q Consensus 580 yDl~H~~~~~~~-~~~~~~~c~~~~~l~E~dRiLRP~G~~i~~--d~~~~~~~~~~~ 633 (667)
||+|-|-.+|.- +. .--.....|.-+=+.|||||+||-. |...++.++++.
T Consensus 197 fDivScQF~~HYaFe---tee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFE---TEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred cceeeeeeeEeeeec---cHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 999998777533 11 1222334666778899999999965 777788888865
No 499
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=54.47 E-value=75 Score=33.29 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=54.5
Q ss_pred CCEEEEeCCC-CchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEeccccccccc
Q 005959 254 VRTILDIGCG-YGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQ 332 (667)
Q Consensus 254 ~~~VLDIGCG-tG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~ 332 (667)
..+||=.|+| .|..+..+++. ....++.++.+++..+.+++.|....+. .... ...+.||+|+-...
T Consensus 156 g~~vlV~g~g~vg~~~~q~a~~--~G~~vi~~~~~~~~~~~~~~~g~~~~~~---~~~~-~~~~~~d~vid~~g------ 223 (319)
T cd08242 156 GDKVAVLGDGKLGLLIAQVLAL--TGPDVVLVGRHSEKLALARRLGVETVLP---DEAE-SEGGGFDVVVEATG------ 223 (319)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHHcCCcEEeC---cccc-ccCCCCCEEEECCC------
Confidence 4678888764 23444444443 1234777888888888888766433221 1111 24456999986521
Q ss_pred CHHHHHHHHHhcccCCeEEEEE
Q 005959 333 KDGILLLEVDRVLKPGGYFVWT 354 (667)
Q Consensus 333 d~~~~L~Ei~RvLKPGG~Lvis 354 (667)
....+....+.|+++|.++..
T Consensus 224 -~~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 224 -SPSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred -ChHHHHHHHHHhhcCCEEEEE
Confidence 134677888899999999973
No 500
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=54.10 E-value=26 Score=31.61 Aligned_cols=75 Identities=17% Similarity=0.085 Sum_probs=53.5
Q ss_pred eCCCCchHHHHHhhcCCceeEEEEecCCHHHHHHHHHcCCCceEEeecccCCCCCCCCccEEEecccccccccCHHHHHH
Q 005959 260 IGCGYGSFGAHLFSKELLTMCIANYEASGSQVQLTLERGLPAMIGSFASKQLPYPSLSFDMLHCARCGVDWDQKDGILLL 339 (667)
Q Consensus 260 IGCGtG~~t~~La~~g~~~~sV~gvD~S~~ml~~A~ergl~~~~~~~da~~Lpfpd~sFDlV~~s~~ll~~~~d~~~~L~ 339 (667)
+-||.|..+..++++ +-+.++++|+++.+.......++-.-+.+|+|+.. +...-.+.
T Consensus 5 l~C~~GaSSs~la~k---------------m~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~-------PQv~~~~~ 62 (99)
T cd05565 5 VLCAGGGTSGLLANA---------------LNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILA-------PQMASYYD 62 (99)
T ss_pred EECCCCCCHHHHHHH---------------HHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEc-------ChHHHHHH
Confidence 668888666666543 56788899999888777766666445578988765 33455778
Q ss_pred HHHhcccCCeEEEEEeC
Q 005959 340 EVDRVLKPGGYFVWTSP 356 (667)
Q Consensus 340 Ei~RvLKPGG~Lvis~p 356 (667)
++...+.+-|.-+...+
T Consensus 63 ~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 63 ELKKDTDRLGIKLVTTT 79 (99)
T ss_pred HHHHHhhhcCCCEEEeC
Confidence 88888888887665544
Done!