BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005960
(667 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 249 bits (636), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 140/346 (40%), Positives = 211/346 (60%), Gaps = 32/346 (9%)
Query: 26 SKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLD 85
++VRV VR+RPF+ A + C+ RG SC+ E+A + +T++ YQ D
Sbjct: 21 ARVRVAVRLRPFVDGTAGASDP---PCV----RGMDSCSLEIANWRNHQETLK---YQFD 70
Query: 86 SFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLA 145
+F+G E + I+ V P++ + G+NA+V AYG TG+GKT+TM GS E+PG++P A
Sbjct: 71 AFYG-ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRA 129
Query: 146 MSKILSICQSTGS-------TAEISYYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGL 198
+ +L + + G+ + +SY E+Y ++ DLL+ + ++ I +D G + + GL
Sbjct: 130 LMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGL 189
Query: 199 SRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALT--- 255
S+ P++S +F+ F + R V T LN SSRSH VL++ V D + L
Sbjct: 190 SQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKV------DQRERLAPFR 243
Query: 256 ---GKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESK 312
GKL LIDLAG+EDNRRT N+G+RL ES IN SLF L V+ ALN PRVPYR+SK
Sbjct: 244 QREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSK 303
Query: 313 LTRILQDSLGGTSHALMVACLNPGE--YQESVHTVSLAARSRHISN 356
LTR+LQDSLGG++H++++A + P Y ++V ++ AARS+ + N
Sbjct: 304 LTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVIN 349
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 133/367 (36%), Positives = 202/367 (55%), Gaps = 42/367 (11%)
Query: 24 TSSKVRVIVRVRPFLSQEIAAKNGNSICCIS---VLDRGSLSCNEEVAVYLKDPDTIRSE 80
++ ++V VRVRP S+E ++ + + V+ R +L D+ ++
Sbjct: 21 SNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTL-------------DSKLTK 67
Query: 81 CYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERP- 139
+ D FG E + ++ V+PLI + +G N TVFAYG TG+GKT+TM G+E
Sbjct: 68 KFTFDRSFGPESKQCD-VYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAEL 126
Query: 140 ----------GLMPLAMSKILSICQ--STGSTAEISYYEVYMDRCYDLLEVK-TKEISIL 186
G++P A+S + + T ISY E+Y + DLL T +I I
Sbjct: 127 KSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIF 186
Query: 187 DD--KDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISV-- 242
DD K G + ++GL +PV+S + ++ +G +RRK A T +N SSRSH V I V
Sbjct: 187 DDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHI 246
Query: 243 --STLLGDDSKAALTGKLNLIDLAGNEDNRRTCNE-GIRLLESAKINQSLFALSNVIHAL 299
+ + G+D GKLNL+DLAG+E+ + NE GIR+ E+ INQSL L VI AL
Sbjct: 247 RENGIEGED--MLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITAL 304
Query: 300 NNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSLAARSRHISNT 357
+ P VPYRESKLTR+LQ+SLGG + ++A ++PG + +E++ T+ A R+++I N
Sbjct: 305 VDRAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNK 364
Query: 358 LPSAQKV 364
QK+
Sbjct: 365 PEVNQKL 371
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 122/348 (35%), Positives = 186/348 (53%), Gaps = 27/348 (7%)
Query: 24 TSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRS---- 79
+S ++VIVR RP ++E N++ I +D S V + P+ +S
Sbjct: 2 SSDNIKVIVRCRPLNARETRE---NALNIIR-MDEAS------AQVIVDPPEQEKSATQA 51
Query: 80 ----ECYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGS 135
+ D+ + Q + IF + PLI + G N+T+FAYG TG+GKT+TM G+
Sbjct: 52 KKVPRTFTFDAVYDQTSCNYG-IFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGN 110
Query: 136 EERPGLMPLAMSKILSICQSTGSTAEI----SYYEVYMDRCYDLLEVKTKEISILDDKDG 191
+E PG +P + + S+ S SY E+Y + DL++ TK + + +DK
Sbjct: 111 KEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTK-LPLKEDKTR 169
Query: 192 QLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVS-TLLGDDS 250
+++ GLS V + E + +G R VA T +ND SSRSH + ++ + + + ++
Sbjct: 170 GIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENK 229
Query: 251 KAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRE 310
+ GKLNL+DLAG+E +T G L+E AKIN SL AL VI L +PYR+
Sbjct: 230 EVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRD 289
Query: 311 SKLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSLAARSRHISN 356
SKLTR+LQDSLGG S LM A ++P Y E++ T+ A R++ I N
Sbjct: 290 SKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKN 337
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 128/347 (36%), Positives = 192/347 (55%), Gaps = 24/347 (6%)
Query: 24 TSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQ 83
+S VRV+VR RP +E AA + L + V +K+P E +
Sbjct: 19 SSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQ----------VSVKNPKGTAHEMPK 68
Query: 84 LDSFFGQEDESVSKI-FYSEV-NPLIPGIFHGRNATVFAYGATGSGKTYTMQG---SEER 138
+F D + + Y E PL+ + G N T+FAYG TG+GKTYTM+G E+
Sbjct: 69 TFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEK 128
Query: 139 PGLMPLAMSKI---LSICQSTGSTAEISYYEVYMDRCYDLL-EVKTKEISILDDKDGQLH 194
G++P + I +S Q+ SY E+Y + DLL + +TK + + + D ++
Sbjct: 129 RGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVY 188
Query: 195 LKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVS-TLLGDDSKAA 253
+K LS S+ E + + + G Q R V T +N+ SSRSH + VI++ + +G D +
Sbjct: 189 VKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENH 248
Query: 254 L-TGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKP-RVPYRES 311
+ GKLNL+DLAG+E +T +G RL E+ KIN SL AL NVI AL + K +PYR+S
Sbjct: 249 IRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDS 308
Query: 312 KLTRILQDSLGGTSHALMVACLNPGEY--QESVHTVSLAARSRHISN 356
KLTR+LQDSLGG + +MVA + P Y +E++ T+ A R+++I N
Sbjct: 309 KLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKN 355
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/346 (34%), Positives = 188/346 (54%), Gaps = 26/346 (7%)
Query: 22 TSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSEC 81
+S+++ ++V+ R RP EI + G I D ++ E + D C
Sbjct: 2 SSSANSIKVVARFRPQNRVEIES-GGQPIVTFQGPDTCTVDSKEAQGSFTFD-RVFDMSC 59
Query: 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSE----E 137
Q D IF + P + I +G N TVFAYG TG+GK+YTM G+ +
Sbjct: 60 KQSD------------IFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPD 107
Query: 138 RPGLMPLAMSKILSICQSTGS----TAEISYYEVYMDRCYDLLEVKTKEISILDDKDGQL 193
G++P + +I + S+ + T +SY E+YM+R DLL + + + ++K+ +
Sbjct: 108 GRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGV 167
Query: 194 HLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAA 253
++KGL + V+S+ E E+ RG R VA T +N SSRSH + VI++ T ++ +A
Sbjct: 168 YVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITI-TQKNVETGSA 226
Query: 254 LTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNK-PRVPYRESK 312
+G+L L+DLAG+E +T G L E+ KIN+SL AL VI+AL + K VPYR+SK
Sbjct: 227 KSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSK 286
Query: 313 LTRILQDSLGGTSHALMVACLNPGEYQ--ESVHTVSLAARSRHISN 356
LTRILQ+SLGG S ++ +P Y E++ T+ R++ I N
Sbjct: 287 LTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKN 332
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 182 bits (461), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 179/341 (52%), Gaps = 30/341 (8%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYL-KDPDTIRSECYQLDS 86
++V+ R RP E+ +RG ++ +A + +D I S+ Y D
Sbjct: 9 IKVMCRFRPLNESEV--------------NRG----DKYIAKFQGEDTVVIASKPYAFDR 50
Query: 87 FFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERP---GLMP 143
F Q S +++ ++ + G N T+FAYG T SGKT+TM+G P G++P
Sbjct: 51 VF-QSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIP 109
Query: 144 LAMSKILSICQSTGSTAE----ISYYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGLS 199
+ I + S E +SY+E+Y+D+ DLL+V +S+ +DK+ ++KG +
Sbjct: 110 RIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCT 169
Query: 200 RVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTGKLN 259
V S E + G R VA T +N+ SSRSH + +I+V ++ L+GKL
Sbjct: 170 ERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQE-NTQTEQKLSGKLY 228
Query: 260 LIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQD 319
L+DLAG+E +T EG L E+ IN+SL AL NVI AL VPYR+SK+TRILQD
Sbjct: 229 LVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQD 288
Query: 320 SLGGTSHALMVACLNPGEYQES--VHTVSLAARSRHISNTL 358
SLGG +V C +P Y ES T+ R++ I NT+
Sbjct: 289 SLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTV 329
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 181 bits (460), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 171/305 (56%), Gaps = 19/305 (6%)
Query: 71 LKDPDTIRSEC-------YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGA 123
+K P+ + C Y D F + + S K++ ++ + G N T+FAYG
Sbjct: 35 VKFPNNVEENCISIAGKVYLFDKVF-KPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQ 93
Query: 124 TGSGKTYTMQG---SEERPGLMPLAMSKILSICQSTGSTAE----ISYYEVYMDRCYDLL 176
T SGKT+TM+G + G++P ++ I + + E +SYYE+YMD+ DLL
Sbjct: 94 TSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLL 153
Query: 177 EVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHG 236
+V +S+ +DK+ ++KG + V+S + E+ G R +A T +N+ SSRSH
Sbjct: 154 DVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHS 213
Query: 237 VLVISVSTLLGDDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVI 296
V +I+V ++ K L+GKL L+DLAG+E +T EG L E+ IN+SL AL NVI
Sbjct: 214 VFLINVKQENLENQK-KLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVI 272
Query: 297 HAL-NNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPGEYQES--VHTVSLAARSRH 353
AL + NK +PYR+SKLTRILQ+SLGG + +V C +P + ES T+ R++
Sbjct: 273 SALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKT 332
Query: 354 ISNTL 358
+ N +
Sbjct: 333 VKNVV 337
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 198/369 (53%), Gaps = 43/369 (11%)
Query: 19 PNSTSTSSK-----VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
PNS++ + ++V+VRVRPF +A + ++ + S +EV+V
Sbjct: 5 PNSSAKKKEEKGKNIQVVVRVRPF---NLAERKASAHSIVE-----SDPVRKEVSVRTGG 56
Query: 74 -PDTIRSECYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132
D + Y D FG + + ++ S V P++ + G NAT+FAYG TG+GKT+TM
Sbjct: 57 LADKSSRKTYTFDMVFGASTKQID-VYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTM 115
Query: 133 QGS---------EERP--GLMPLAMSKILSICQSTGS--TAEISYYEVYMDRCYDLLEVK 179
+G EE P G++P + +I G+ + ++S E+Y + +DLL
Sbjct: 116 EGERSPNEEYCWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPS 175
Query: 180 ---TKEISILDD---KDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSR 233
++ + + DD K G + +KGL + V++ E +I +G +R A T +N SSR
Sbjct: 176 SDVSERLQMFDDPRNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSR 234
Query: 234 SHGVLVISV----STLLGDDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSL 289
SH V +++ +T+ G++ GKLNL+DLAG+E+ R+ R E+ INQSL
Sbjct: 235 SHSVFSVTIHMKETTIDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 292
Query: 290 FALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSL 347
L VI AL P VPYRESKLTRILQDSLGG + ++A ++P +E++ T+
Sbjct: 293 LTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEY 352
Query: 348 AARSRHISN 356
A R+++I N
Sbjct: 353 AHRAKNILN 361
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 178/341 (52%), Gaps = 30/341 (8%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYL-KDPDTIRSECYQLDS 86
++V+ R RP E+ +RG ++ VA + +D I S+ Y D
Sbjct: 9 IKVMCRFRPLNESEV--------------NRG----DKYVAKFQGEDTVMIASKPYAFDR 50
Query: 87 FFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERP---GLMP 143
F Q S +++ ++ + G N T+FAYG T SGK +TM+G P G++P
Sbjct: 51 VF-QSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIP 109
Query: 144 LAMSKILSICQSTGSTAE----ISYYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGLS 199
+ I + S E +SY+E+Y+D+ DLL+V +S+ +DK+ ++KG +
Sbjct: 110 RIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCT 169
Query: 200 RVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTGKLN 259
V S E + G R VA T +N+ SSRSH + +I+V ++ L+GKL
Sbjct: 170 ERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQE-NTQTEQKLSGKLY 228
Query: 260 LIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQD 319
L+DLAG+E +T EG L E+ IN+SL AL NVI AL VPYR+SK+TRILQD
Sbjct: 229 LVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQD 288
Query: 320 SLGGTSHALMVACLNPGEYQES--VHTVSLAARSRHISNTL 358
SLGG +V C +P Y ES T+ R++ I NT+
Sbjct: 289 SLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTV 329
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 178 bits (452), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 120/348 (34%), Positives = 183/348 (52%), Gaps = 39/348 (11%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSF 87
VRV +RVRP L +E+ + + + L R +L + ++
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHV---------------- 56
Query: 88 FGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGS------EERPGL 141
ED ++ + V PL+ F G NATVFAYG TGSGKTYTM + E+ G+
Sbjct: 57 VLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGI 116
Query: 142 MPLAMSKILSICQST---GSTAEISYYEVYMDRCYDLLEVKT--KEISILDDKDGQLHLK 196
+P AM++ + +SY EVY + DLLEV T ++I + +D+ G + L
Sbjct: 117 VPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLC 176
Query: 197 GLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISV-------STLLGDD 249
G+ V V + E + G R T LN +SSRSH V +++ S L
Sbjct: 177 GVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPA 236
Query: 250 SKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPR---V 306
L K + +DLAG+E +T + G RL ES +IN SL AL NVI AL + + R +
Sbjct: 237 PGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHI 296
Query: 307 PYRESKLTRILQDSLGGTSHALMVACLNP--GEYQESVHTVSLAARSR 352
PYR+SK+TRIL+DSLGG + +M+AC++P ++ E+++T++ A+R++
Sbjct: 297 PYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 121/338 (35%), Positives = 184/338 (54%), Gaps = 26/338 (7%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSF 87
+RVI RVRP + ++G + + + +++ ++L + ++LD
Sbjct: 6 IRVIARVRP-----VTKEDGEGPEATNAV---TFDADDDSIIHLLHKG--KPVSFELDKV 55
Query: 88 FGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMS 147
F ++ + + EV L+ G N +FAYG TG+GKTYTM+G+ E PG+ A+
Sbjct: 56 F--SPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQ 113
Query: 148 KILSICQSTGSTAE----ISYYEVYMDRCYDLL--EVKTK-EISILDDKDGQLHLKGLSR 200
+ S Q S E +S E+Y + DLL E + K EI + D GQL++ GL+
Sbjct: 114 LLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTE 173
Query: 201 VPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAAL--TGKL 258
V S+ + ++F G R T LN+ SSRSH +L+++V G D L TGKL
Sbjct: 174 FQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVR---GVDCSTGLRTTGKL 230
Query: 259 NLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQ 318
NL+DLAG+E ++ EG RL E+ IN+SL AL +VI AL + + VP+R SKLT +LQ
Sbjct: 231 NLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQ 290
Query: 319 DSLGGTSHALMVACLNPGEYQ--ESVHTVSLAARSRHI 354
DSL G S LMV ++P E E+++++ A R R +
Sbjct: 291 DSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 170/322 (52%), Gaps = 28/322 (8%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYL-KDPDTIRSECYQLDS 86
++V+ R RP E+ +RG ++ +A + +D I S+ Y D
Sbjct: 9 IKVMCRFRPLNESEV--------------NRG----DKYIAKFQGEDTVVIASKPYAFDR 50
Query: 87 FFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERP---GLMP 143
F Q S +++ ++ + G N T+FAYG T SGKT+TM+G P G++P
Sbjct: 51 VF-QSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIP 109
Query: 144 LAMSKILSICQSTGSTAE----ISYYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGLS 199
+ I + S E +SY+E+Y+D+ DLL+V +S+ +DK+ ++KG +
Sbjct: 110 RIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCT 169
Query: 200 RVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTGKLN 259
V S E + G R VA T +N+ SSRSH + +I+V ++ L+GKL
Sbjct: 170 ERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQE-NTQTEQKLSGKLY 228
Query: 260 LIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQD 319
L+DLAG+E +T EG L E+ IN+SL AL NVI AL VPYR+SK+TRILQD
Sbjct: 229 LVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQD 288
Query: 320 SLGGTSHALMVACLNPGEYQES 341
SLGG +V C +P Y ES
Sbjct: 289 SLGGNCRTTIVICCSPSSYNES 310
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 127/377 (33%), Positives = 198/377 (52%), Gaps = 43/377 (11%)
Query: 19 PNSTSTSSK-----VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
PNS++ + ++V+VR RPF E A + + C V +EV+V
Sbjct: 5 PNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPV--------RKEVSVRTGG 56
Query: 74 -PDTIRSECYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132
D + Y D FG + + ++ S V P++ + G N T+FAYG TG+GKT+TM
Sbjct: 57 LADKSSRKTYTFDMVFGASTKQID-VYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 115
Query: 133 QGS---------EERP--GLMPLAMSKILSICQSTGS--TAEISYYEVYMDRCYDLLEVK 179
+G EE P G++P + +I G+ + ++S E+Y + +DLL
Sbjct: 116 EGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPS 175
Query: 180 T---KEISILDD---KDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSR 233
+ + + + DD K G + +KGL + V++ E +I +G +R A T +N SSR
Sbjct: 176 SDVSERLQMFDDPRNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSR 234
Query: 234 SHGVLVISV----STLLGDDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSL 289
SH V +++ +T+ G++ GKLNL+DLAG+E+ R+ R E+ INQSL
Sbjct: 235 SHSVFSVTIHMKETTIDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 292
Query: 290 FALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSL 347
L VI AL P VPYRESKLTRILQDSLGG + ++A ++P +E++ T+
Sbjct: 293 LTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEY 352
Query: 348 AARSRHISNTLPSAQKV 364
A R+++I N QK+
Sbjct: 353 AHRAKNILNKPEVNQKL 369
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 197/376 (52%), Gaps = 43/376 (11%)
Query: 19 PNSTSTSSK-----VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
PNS++ + ++V+VR RPF E A + + C V +EV+V
Sbjct: 5 PNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPV--------RKEVSVRTGG 56
Query: 74 -PDTIRSECYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132
D + Y D FG + + ++ S V P++ + G N T+FAYG TG+GKT+TM
Sbjct: 57 LADKSSRKTYTFDMVFGASTKQID-VYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 115
Query: 133 QGS---------EERP--GLMPLAMSKILSICQSTGS--TAEISYYEVYMDRCYDLLEVK 179
+G EE P G++P + +I G+ + ++S E+Y + +DLL
Sbjct: 116 EGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPS 175
Query: 180 T---KEISILDD---KDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSR 233
+ + + + DD K G + +KGL + V++ E +I +G +R A T +N SSR
Sbjct: 176 SDVSERLQMFDDPRNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSR 234
Query: 234 SHGVLVISV----STLLGDDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSL 289
SH V +++ +T+ G++ GKLNL+DLAG+E+ R+ R E+ INQSL
Sbjct: 235 SHSVFSVTIHMKETTIDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 292
Query: 290 FALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSL 347
L VI AL P VPYRESKLTRILQDSLGG + ++A ++P +E++ T+
Sbjct: 293 LTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEY 352
Query: 348 AARSRHISNTLPSAQK 363
A R+++I N QK
Sbjct: 353 AHRAKNILNKPEVNQK 368
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 197/376 (52%), Gaps = 43/376 (11%)
Query: 19 PNSTSTSSK-----VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
PNS++ + ++V+VR RPF E A + + C V +EV+V
Sbjct: 4 PNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPV--------RKEVSVRTGG 55
Query: 74 -PDTIRSECYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132
D + Y D FG + + ++ S V P++ + G N T+FAYG TG+GKT+TM
Sbjct: 56 LADKSSRKTYTFDMVFGASTKQID-VYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 114
Query: 133 QGS---------EERP--GLMPLAMSKILSICQSTGS--TAEISYYEVYMDRCYDLLEVK 179
+G EE P G++P + +I G+ + ++S E+Y + +DLL
Sbjct: 115 EGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPS 174
Query: 180 T---KEISILDD---KDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSR 233
+ + + + DD K G + +KGL + V++ E +I +G +R A T +N SSR
Sbjct: 175 SDVSERLQMFDDPRNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSR 233
Query: 234 SHGVLVISV----STLLGDDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSL 289
SH V +++ +T+ G++ GKLNL+DLAG+E+ R+ R E+ INQSL
Sbjct: 234 SHSVFSVTIHMKETTIDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 291
Query: 290 FALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSL 347
L VI AL P VPYRESKLTRILQDSLGG + ++A ++P +E++ T+
Sbjct: 292 LTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEY 351
Query: 348 AARSRHISNTLPSAQK 363
A R+++I N QK
Sbjct: 352 AHRAKNILNKPEVNQK 367
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 197/376 (52%), Gaps = 43/376 (11%)
Query: 19 PNSTSTSSK-----VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
PNS++ + ++V+VR RPF E A + + C V +EV+V
Sbjct: 5 PNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPV--------RKEVSVRTGG 56
Query: 74 -PDTIRSECYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132
D + Y D FG + + ++ S V P++ + G N T+FAYG TG+GKT+TM
Sbjct: 57 LADKSSRKTYTFDMVFGASTKQID-VYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 115
Query: 133 QGS---------EERP--GLMPLAMSKILSICQSTGS--TAEISYYEVYMDRCYDLLEVK 179
+G EE P G++P + +I G+ + ++S E+Y + +DLL
Sbjct: 116 EGERSPNEEYTWEEDPLDGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPS 175
Query: 180 T---KEISILDD---KDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSR 233
+ + + + DD K G + +KGL + V++ E +I +G +R A T +N SSR
Sbjct: 176 SDVSERLQMFDDPRNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSR 234
Query: 234 SHGVLVISV----STLLGDDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSL 289
SH V +++ +T+ G++ GKLNL+DLAG+E+ R+ R E+ INQSL
Sbjct: 235 SHSVFSVTIHMKETTIDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 292
Query: 290 FALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSL 347
L VI AL P VPYRESKLTRILQDSLGG + ++A ++P +E++ T+
Sbjct: 293 LTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEY 352
Query: 348 AARSRHISNTLPSAQK 363
A R+++I N QK
Sbjct: 353 AHRAKNILNKPEVNQK 368
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 197/376 (52%), Gaps = 43/376 (11%)
Query: 19 PNSTSTSSK-----VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
PNS++ + ++V+VR RPF E A + + C V +EV+V
Sbjct: 7 PNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPV--------RKEVSVRTGG 58
Query: 74 -PDTIRSECYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132
D + Y D FG + + ++ S V P++ + G N T+FAYG TG+GKT+TM
Sbjct: 59 LADKSSRKTYTFDMVFGASTKQID-VYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 117
Query: 133 QGS---------EERP--GLMPLAMSKILSICQSTGS--TAEISYYEVYMDRCYDLLEVK 179
+G EE P G++P + +I G+ + ++S E+Y + +DLL
Sbjct: 118 EGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPS 177
Query: 180 T---KEISILDD---KDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSR 233
+ + + + DD K G + +KGL + V++ E +I +G +R A T +N SSR
Sbjct: 178 SDVSERLQMFDDPRNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSR 236
Query: 234 SHGVLVISV----STLLGDDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSL 289
SH V +++ +T+ G++ GKLNL+DLAG+E+ R+ R E+ INQSL
Sbjct: 237 SHSVFSVTIHMKETTIDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 294
Query: 290 FALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSL 347
L VI AL P VPYRESKLTRILQDSLGG + ++A ++P +E++ T+
Sbjct: 295 LTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEY 354
Query: 348 AARSRHISNTLPSAQK 363
A R+++I N QK
Sbjct: 355 AHRAKNILNKPEVNQK 370
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 127/376 (33%), Positives = 197/376 (52%), Gaps = 43/376 (11%)
Query: 19 PNSTSTSSK-----VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
PNS++ + ++V+VR RPF E A + + C V +EV+V
Sbjct: 5 PNSSAKKKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPV--------RKEVSVRTGG 56
Query: 74 -PDTIRSECYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132
D + Y D FG + + ++ S V P++ + G N T+FAYG TG+GKT+TM
Sbjct: 57 LADKSSRKTYTFDMVFGASTKQID-VYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 115
Query: 133 QGS---------EERP--GLMPLAMSKILSICQSTGS--TAEISYYEVYMDRCYDLLEVK 179
+G EE P G++P + +I G+ + ++S E+Y + +DLL
Sbjct: 116 EGERSPNEEYTWEEVPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPS 175
Query: 180 T---KEISILDD---KDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSR 233
+ + + + DD K G + +KGL + V++ E +I +G +R A T +N SSR
Sbjct: 176 SDVSERLQMFDDPRNKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSR 234
Query: 234 SHGVLVISV----STLLGDDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSL 289
SH V +++ +T+ G++ GKLNL+DLAG+E+ R+ R E+ INQSL
Sbjct: 235 SHSVFSVTIHMKETTIDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 292
Query: 290 FALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSL 347
L VI AL P VPYRESKLTRILQDSLGG + ++A ++P +E++ T+
Sbjct: 293 LTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEY 352
Query: 348 AARSRHISNTLPSAQK 363
A R+++I N QK
Sbjct: 353 AHRAKNILNKPEVNQK 368
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 124/362 (34%), Positives = 191/362 (52%), Gaps = 38/362 (10%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD-PDTIRSECYQLDS 86
++V+VR RPF E A + + C V +EV+V D + Y D
Sbjct: 10 IQVVVRCRPFNLAERKASAHSIVECDPV--------RKEVSVRTGGLADKSSRKTYTFDM 61
Query: 87 FFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGS---------EE 137
FG + + ++ S V P++ + G N T+FAYG TG+GKT+TM+G EE
Sbjct: 62 VFGASTKQID-VYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEE 120
Query: 138 RP--GLMPLAMSKILSICQSTGS--TAEISYYEVYMDRCYDLLEVKT---KEISILDD-- 188
P G++P + +I G+ + ++S E+Y + +DLL + + + + DD
Sbjct: 121 DPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 180
Query: 189 -KDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISV----S 243
K G + +KGL + V++ E +I +G +R A T +N SSRSH V +++ +
Sbjct: 181 NKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKET 239
Query: 244 TLLGDDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNK 303
T+ G++ GKLNL+DLAG+E+ R+ R E+ INQSL L VI AL
Sbjct: 240 TIDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERT 297
Query: 304 PRVPYRESKLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSLAARSRHISNTLPSA 361
P VPYRESKLTRILQDSLGG + ++A ++P +E++ T+ A R+++I N
Sbjct: 298 PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 357
Query: 362 QK 363
QK
Sbjct: 358 QK 359
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 175 bits (444), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 189/355 (53%), Gaps = 38/355 (10%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD-PDTIRSECYQLDS 86
++V+VR RPF E A + + C V +EV+V D + Y D
Sbjct: 4 IQVVVRCRPFNLAERKASAHSIVECDPV--------RKEVSVRTGGLADKSSRKTYTFDM 55
Query: 87 FFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGS---------EE 137
FG + + ++ S V P++ + G N T+FAYG TG+GKT+TM+G EE
Sbjct: 56 VFGASTKQID-VYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEE 114
Query: 138 RP--GLMPLAMSKILSICQSTGS--TAEISYYEVYMDRCYDLLEVKT---KEISILDD-- 188
P G++P + +I G+ + ++S E+Y + +DLL + + + + DD
Sbjct: 115 DPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 174
Query: 189 -KDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISV----S 243
K G + +KGL + V++ E +I +G +R A T +N SSRSH V +++ +
Sbjct: 175 NKRGVI-IKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKET 233
Query: 244 TLLGDDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNK 303
T+ G++ GKLNL+DLAG+E+ R+ R E+ INQSL L VI AL
Sbjct: 234 TIDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERT 291
Query: 304 PRVPYRESKLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSLAARSRHISN 356
P VPYRESKLTRILQDSLGG + ++A ++P +E++ T+ A R+++I N
Sbjct: 292 PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 346
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 130/370 (35%), Positives = 189/370 (51%), Gaps = 48/370 (12%)
Query: 25 SSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQL 84
S ++V+ R RP +E AA + + L + V L++P E +
Sbjct: 20 SEALKVVARCRPLSRKEEAAGHEQILTMDVKLGQ----------VTLRNPRAAPGELPKT 69
Query: 85 DSFFGQEDESVSKI-FYSE-VNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERP--- 139
+F D S + Y E V PLI + G N TVFAYG TG+GKTYTMQG+ P
Sbjct: 70 FTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELR 129
Query: 140 GLMPLAMSKI---LSICQSTGSTAEISYYEVYMDRCYDLLEVK-TKEISILDDKDGQLHL 195
G++P A I +S Q+ SY E+Y + DLL + K + + ++ + +++
Sbjct: 130 GVIPNAFEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYI 189
Query: 196 KGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVS-TLLGDDSKAAL 254
K LS ++ E + + + G Q R V T +N+VSSRSH + +I+V + G D + +
Sbjct: 190 KDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHI 249
Query: 255 -TGKLNLIDLAGNE-DNRRTCNEGI-----------------------RLLESAKINQSL 289
GKLNL+DLAG+E N+ N R E++KIN SL
Sbjct: 250 RVGKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSL 309
Query: 290 FALSNVIHALNNNKP-RVPYRESKLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVS 346
AL NVI AL N+ +PYR+SKLTR+LQDSLGG + +MVA L P Y ES+ T+
Sbjct: 310 SALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLR 369
Query: 347 LAARSRHISN 356
A R+++I N
Sbjct: 370 FANRAKNIKN 379
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 118/348 (33%), Positives = 181/348 (52%), Gaps = 39/348 (11%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSF 87
VRV +RVRP L +E+ + + + L R +L + ++
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHV---------------- 56
Query: 88 FGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGS------EERPGL 141
ED ++ + V PL+ F G NATVFAYG TGSGKTYTM + E+ G+
Sbjct: 57 VLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGI 116
Query: 142 MPLAMSKILSICQST---GSTAEISYYEVYMDRCYDLLEVKT--KEISILDDKDGQLHLK 196
+P AM++ + +SY EVY + DLLEV T ++I + +D+ G + L
Sbjct: 117 VPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLC 176
Query: 197 GLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISV-------STLLGDD 249
G+ V V + E + G R T LN +SSRSH V +++ S L
Sbjct: 177 GVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPA 236
Query: 250 SKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPR---V 306
L K + +DLAG+E +T + G ES +IN SL AL NVI AL + + R +
Sbjct: 237 PGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNI 296
Query: 307 PYRESKLTRILQDSLGGTSHALMVACLNP--GEYQESVHTVSLAARSR 352
PYR+SK+TRIL+DSLGG + +M+AC++P ++ E+++T++ A+R++
Sbjct: 297 PYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 124/357 (34%), Positives = 185/357 (51%), Gaps = 39/357 (10%)
Query: 26 SKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLD 85
SKV+V VR+RP +E + ++ C + V D + N K + + + D
Sbjct: 1 SKVKVAVRIRPMNRRET---DLHTKCVVDV-DANKVILNPVNTNLSKGDARGQPKVFAYD 56
Query: 86 SFFGQEDESVSK-------IFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEER 138
F DESV + +F ++ F G NA +FAYG TGSGK+YTM G+ ++
Sbjct: 57 HCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQ 116
Query: 139 PGLMPLAMSKILSICQSTGS-----TAEISYYEVYMDRCYDLLE-------VKTKEISIL 186
PGL+P S + Q + E+SY E+Y ++ DLL+ +K +E S+L
Sbjct: 117 PGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVL 176
Query: 187 DDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLL 246
++ GLS++ V S + + + S G + R VA T +N+ SSRSH V I+++ L
Sbjct: 177 GP-----YVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTL 231
Query: 247 GD---DSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHAL---- 299
D + GKL+L+DLAG+E +T G RL E + IN+SL L VI AL
Sbjct: 232 YDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQS 291
Query: 300 --NNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSLAARSR 352
N VPYR+S LT +L+DSLGG S MVA ++P Y E++ T+ A R++
Sbjct: 292 AGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/342 (33%), Positives = 181/342 (52%), Gaps = 30/342 (8%)
Query: 27 KVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQ--L 84
K+RV R+RP +EI AK N+I S +E +L D + Y
Sbjct: 6 KIRVYCRLRPLCEKEIIAKERNAI----------RSVDEFTVEHLWKDDKAKQHMYDRVF 55
Query: 85 DSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPL 144
D Q+D + + L+ G N +FAYG TGSGKT+T+ G++ PGL P
Sbjct: 56 DGNATQDD------VFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPR 109
Query: 145 AMSKILSICQSTGSTAEIS----YYEVYMDRCYDLL---EVKTKEISILDDKDGQLHLKG 197
AMS++ I + + S E+Y D DLL + K ++ I D G + ++
Sbjct: 110 AMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVEN 169
Query: 198 LSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVL-VISVSTLLGDDSKAALTG 256
++ V +++ E + I RG ++R T +N+ SSRSH ++ VI ST L ++A G
Sbjct: 170 VTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNL--QTQAIARG 227
Query: 257 KLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRI 316
KL+ +DLAG+E +++ + G +L E+ IN+SL AL +VI AL++ +PYR KLT +
Sbjct: 228 KLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTML 287
Query: 317 LQDSLGGTSHALMVACLNPGE--YQESVHTVSLAARSRHISN 356
+ DSLGG + LM ++P E E+ ++++ A+R R I N
Sbjct: 288 MSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVN 329
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/372 (31%), Positives = 190/372 (51%), Gaps = 33/372 (8%)
Query: 27 KVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQ--L 84
K+RV R+RP +E + + + + +E + D + Y
Sbjct: 14 KIRVYCRIRPLNEKESSEREKQMLTTV----------DEFTVEHPWKDDKRKQHIYDRVF 63
Query: 85 DSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPL 144
D Q+D + + L+ G N +FAYG TGSGKT+T+ G E PGL P
Sbjct: 64 DMRASQDD------IFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPR 117
Query: 145 AMSKILSICQSTGSTAEIS----YYEVYMDRCYDLLEVKTK---EISILDDKDGQLHLKG 197
A ++ +I + S E+Y D DLL K+ ++ I D G + ++
Sbjct: 118 ATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVEN 177
Query: 198 LSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTGK 257
++ +P++++ E + I RG +RR V+ T +N+ SSRSH +L + + ++ +++A GK
Sbjct: 178 VTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESI-DLQTQSAARGK 236
Query: 258 LNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRIL 317
L+ +DLAG+E +++ + G +L E+ IN+SL AL +VI AL++ +PYR KLT ++
Sbjct: 237 LSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTMLM 296
Query: 318 QDSLGGTSHALMVACLNPGE--YQESVHTVSLAARSRHISNTLPSAQKVQTPMVKIDMEA 375
DSLGG + LM ++P E E+ +++ A+R R I N PS MV++
Sbjct: 297 SDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVND-PSKHISSKEMVRL---K 352
Query: 376 KLRA-WLESKGK 386
KL A W E GK
Sbjct: 353 KLVAYWKEQAGK 364
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 118/351 (33%), Positives = 186/351 (52%), Gaps = 31/351 (8%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCN---EEVAVY----LKDPDTIRSE 80
++V+VRVRP ++E AA + V+D+ L + EEV+ + + + I+ +
Sbjct: 12 MKVVVRVRPENTKEKAAGFHK---VVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQ 68
Query: 81 CYQLDSFFG---QEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEE 137
L F E + S++F P++ +G N TV AYGATG+GKT+TM GS +
Sbjct: 69 NKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSAD 128
Query: 138 RPGLMPLAMSKIL----SICQSTGSTAEISYYEVYMDRCYDLLEVKTKEISILDDKDGQL 193
PG+M L M + I + + +SY EVY ++ DLL V + +++ +D +
Sbjct: 129 EPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLL-VNSGPLAVREDTQKGV 187
Query: 194 HLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAA 253
+ GL+ S E + G + R T +N SSRSH V I L D A+
Sbjct: 188 VVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIY---LRQQDKTAS 244
Query: 254 LT-----GKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPR--- 305
+ K++LIDLAG+E + +G R +E IN+SL AL NVI+AL ++K +
Sbjct: 245 INQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQH 304
Query: 306 VPYRESKLTRILQDSLGGTSHALMVACLNPGE--YQESVHTVSLAARSRHI 354
+PYR SKLTR+L+DSLGG +M+A ++P Y ++ +T+ A R++ I
Sbjct: 305 IPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 158 bits (400), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 121/365 (33%), Positives = 192/365 (52%), Gaps = 42/365 (11%)
Query: 26 SKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDP-DTIRSECYQL 84
+ V+V VRVRPF S+E++ +S C I +S + V K P +T +S +
Sbjct: 20 ASVKVAVRVRPFNSREMSR---DSKCIIQ------MSGSTTTIVNPKQPKETPKSFSFDY 70
Query: 85 DSFFGQEDESVS----KIFYSEVNP-LIPGIFHGRNATVFAYGATGSGKTYTMQGSEERP 139
+ E ++ K Y ++ ++ F G N +FAYG TG+GK+YTM G +E+
Sbjct: 71 SYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKD 130
Query: 140 --GLMPLAMSKILSICQSTGS-----TAEISYYEVYMDRCYDLLEVKTK-EISILDDKDG 191
G++P + S T + + E+SY E+Y +R DLL K K + + +
Sbjct: 131 QQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLL 190
Query: 192 QLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSK 251
+++ LS++ V S + Q++ G + R VA T +N+ SSRSH V I + T D++
Sbjct: 191 GPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNI-IFTQKRHDAE 249
Query: 252 AALT----GKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALN--NNKPR 305
+T K++L+DLAG+E T +G RL E A IN+SL L VI AL ++ P
Sbjct: 250 TNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPN 309
Query: 306 ----------VPYRESKLTRILQDSLGGTSHALMVACLNPGE--YQESVHTVSLAARSRH 353
+PYR+S LT +L+++LGG S MVA L+P + Y E++ T+ A R++
Sbjct: 310 KNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQ 369
Query: 354 ISNTL 358
I NT+
Sbjct: 370 IRNTV 374
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/363 (33%), Positives = 191/363 (52%), Gaps = 42/363 (11%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDP-DTIRSECYQLDS 86
V+V VRVRPF S+E++ +S C I +S + V K P +T +S +
Sbjct: 6 VKVAVRVRPFNSREMSR---DSKCIIQ------MSGSTTTIVNPKQPKETPKSFSFDYSY 56
Query: 87 FFGQEDESVS----KIFYSEVNP-LIPGIFHGRNATVFAYGATGSGKTYTMQGSEERP-- 139
+ E ++ K Y ++ ++ F G N +FAYG TG+GK+YTM G +E+
Sbjct: 57 WSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQ 116
Query: 140 GLMPLAMSKILSICQSTGS-----TAEISYYEVYMDRCYDLLEVKTK-EISILDDKDGQL 193
G++P + S T + + E+SY E+Y +R DLL K K + + +
Sbjct: 117 GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGP 176
Query: 194 HLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAA 253
+++ LS++ V S + Q++ G + R VA T +N+ SSRSH V I + T D++
Sbjct: 177 YVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNI-IFTQKRHDAETN 235
Query: 254 LT----GKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALN--NNKPR-- 305
+T K++L+DLAG+E T +G RL E A IN+SL L VI AL ++ P
Sbjct: 236 ITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKN 295
Query: 306 --------VPYRESKLTRILQDSLGGTSHALMVACLNPGE--YQESVHTVSLAARSRHIS 355
+PYR+S LT +L+++LGG S MVA L+P + Y E++ T+ A R++ I
Sbjct: 296 KKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIR 355
Query: 356 NTL 358
NT+
Sbjct: 356 NTV 358
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/363 (33%), Positives = 191/363 (52%), Gaps = 42/363 (11%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDP-DTIRSECYQLDS 86
V+V VRVRPF S+E++ +S C I +S + V K P +T +S +
Sbjct: 6 VKVAVRVRPFNSREMSR---DSKCIIQ------MSGSTTTIVNPKQPKETPKSFSFDYSY 56
Query: 87 FFGQEDESVS----KIFYSEVNP-LIPGIFHGRNATVFAYGATGSGKTYTMQGSEERP-- 139
+ E ++ K Y ++ ++ F G N +FAYG TG+GK+YTM G +E+
Sbjct: 57 WSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQ 116
Query: 140 GLMPLAMSKILSICQSTGS-----TAEISYYEVYMDRCYDLLEVKTK-EISILDDKDGQL 193
G++P + S T + + E+SY E+Y +R DLL K K + + +
Sbjct: 117 GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGP 176
Query: 194 HLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAA 253
+++ LS++ V S + Q++ G + R VA T +N+ SSRSH V I + T D++
Sbjct: 177 YVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNI-IFTQKRHDAETN 235
Query: 254 LT----GKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALN--NNKPR-- 305
+T K++L+DLAG+E T +G RL E A IN+SL L VI AL ++ P
Sbjct: 236 ITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKN 295
Query: 306 --------VPYRESKLTRILQDSLGGTSHALMVACLNPGE--YQESVHTVSLAARSRHIS 355
+PYR+S LT +L+++LGG S MVA L+P + Y E++ T+ A R++ I
Sbjct: 296 KKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIR 355
Query: 356 NTL 358
NT+
Sbjct: 356 NTV 358
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/363 (33%), Positives = 191/363 (52%), Gaps = 42/363 (11%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDP-DTIRSECYQLDS 86
V+V VRVRPF S+E++ +S C I +S + V K P +T +S +
Sbjct: 6 VKVAVRVRPFNSREMSR---DSKCIIQ------MSGSTTTIVNPKQPKETPKSFSFDYSY 56
Query: 87 FFGQEDESVS----KIFYSEVNP-LIPGIFHGRNATVFAYGATGSGKTYTMQGSEERP-- 139
+ E ++ K Y ++ ++ F G N +FAYG TG+GK+YTM G +E+
Sbjct: 57 WSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQ 116
Query: 140 GLMPLAMSKILSICQSTGS-----TAEISYYEVYMDRCYDLLEVKTK-EISILDDKDGQL 193
G++P + S T + + E+SY E+Y +R DLL K K + + +
Sbjct: 117 GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGP 176
Query: 194 HLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAA 253
+++ LS++ V S + Q++ G + R VA T +N+ SSRSH V I + T D++
Sbjct: 177 YVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNI-IFTQKRHDAETN 235
Query: 254 LT----GKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALN--NNKPR-- 305
+T K++L+DLAG+E T +G RL E A IN+SL L VI AL ++ P
Sbjct: 236 ITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKN 295
Query: 306 --------VPYRESKLTRILQDSLGGTSHALMVACLNPGE--YQESVHTVSLAARSRHIS 355
+PYR+S LT +L+++LGG S MVA L+P + Y E++ T+ A R++ I
Sbjct: 296 KKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIR 355
Query: 356 NTL 358
NT+
Sbjct: 356 NTV 358
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 144/281 (51%), Gaps = 37/281 (13%)
Query: 111 FHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLA----MSKILSICQSTGSTA---EIS 163
F G + +FAYG TGSGK+YTM G+ ++PGL+P +I S T + + ++S
Sbjct: 133 FEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVS 192
Query: 164 YYEVYMDRCYDLLE--VKTKEISILDDKDGQL---HLKGLSRVPVNSMTEFQEIFSRGIQ 218
Y+EVY + DLL V K L ++ ++K L+ VPV + E G
Sbjct: 193 YFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDG 252
Query: 219 RRKVAHTGLNDVSSRSHGVLVISVSTLLGD---DSKAALTGKLNLIDLAGNEDNRRTCNE 275
R VA T +ND SSRSH V I + + D D + ++ L+DLAG+E + T
Sbjct: 253 SRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEAT 312
Query: 276 GIRLLESAKINQSLFALSNVIHALNNNKPR----------------------VPYRESKL 313
G RL E + IN+SL L VI AL + K VPYR+S L
Sbjct: 313 GQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVL 372
Query: 314 TRILQDSLGGTSHALMVACLNPGEYQESVHTVSLAARSRHI 354
T +L+DSLGG S M+AC++P +Y E++ T+ A +++ I
Sbjct: 373 TWLLKDSLGGNSKTAMIACISPTDYDETLSTLRYADQAKRI 413
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 118/360 (32%), Positives = 176/360 (48%), Gaps = 47/360 (13%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDS- 86
V V VRVRP S+E S E VY K + + YQ+D
Sbjct: 6 VAVCVRVRPLNSRE-------------------ESLGETAQVYWKTDNNV---IYQVDGS 43
Query: 87 --------FFGQEDESVSKIFYSEVN-PLIPGIFHGRNATVFAYGATGSGKTYTMQGSEE 137
F G E +K Y E+ P+I G N T+FAYG T SGKTYTM GSE+
Sbjct: 44 KSFNFDRVFHGNE---TTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSED 100
Query: 138 RPGLMPLAMSKILSICQSTGSTA---EISYYEVYMDRCYDLL--EVKTKEISILDDKDGQ 192
G++P A+ I + +SY E+Y + DLL K K + I +D +
Sbjct: 101 HLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRN 160
Query: 193 LHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVL-VISVSTLLGDDSK 251
+++ L+ V + + ++G + R T +N SSRSH + +I S G+ S
Sbjct: 161 VYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSN 220
Query: 252 AALTGK---LNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNK--PRV 306
+ K LNL+DLAG+E +T G+RL E IN+SLF L VI L++ + +
Sbjct: 221 CEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFI 280
Query: 307 PYRESKLTRILQDSLGGTSHALMVACLNPGEYQESVHTVSLAARSRHISNTLPSAQKVQT 366
YR+SKLTRILQ+SLGG + ++ + P + E++ + A+ ++++ NT P +V T
Sbjct: 281 NYRDSKLTRILQNSLGGNAKTRIICTITPVSFDETLTALQFASTAKYMKNT-PYVNEVST 339
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 178/363 (49%), Gaps = 52/363 (14%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSF 87
+RV R+RP L E N +CC + + ++E V L+ D Q S
Sbjct: 55 IRVFCRIRPPLESE-----ENRMCC-------TWTYHDESTVELQSIDA------QAKSK 96
Query: 88 FGQEDESVSKIF---------YSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEER 138
GQ+ S ++F + V+PLI G N +FAYG TGSGKTYTM G E
Sbjct: 97 MGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES 156
Query: 139 PGLMPLAMSKILSICQ---STGSTAEI--SYYEVYMDRCYDLL--EVKTKEISILDDKDG 191
G++P + + + + G EI ++ E+Y + YDLL E K EI + +
Sbjct: 157 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 216
Query: 192 QLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSK 251
+++ ++ V + + R A T N+ SSRSH V + + + +
Sbjct: 217 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE 276
Query: 252 AALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRES 311
++ G +NL+DLAG+E + + R+ E+ IN+SL L+NVI AL + +PYR S
Sbjct: 277 ISV-GSINLVDLAGSESPKTST----RMTETKNINRSLSELTNVILALLQKQDHIPYRNS 331
Query: 312 KLTRILQDSLGGTSHALMVACLNPGE--YQESVHTVSLAA-----------RSRHISNTL 358
KLT +L SLGG S LM ++P + +QESV ++ AA R+R+++N++
Sbjct: 332 KLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSV 391
Query: 359 PSA 361
++
Sbjct: 392 ANS 394
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 178/363 (49%), Gaps = 52/363 (14%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSF 87
+RV R+RP L E N +CC + + ++E V L+ D Q S
Sbjct: 69 IRVFCRIRPPLESE-----ENRMCC-------TWTYHDESTVELQSIDA------QAKSK 110
Query: 88 FGQEDESVSKIF---------YSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEER 138
GQ+ S ++F + V+PLI G N +FAYG TGSGKTYTM G E
Sbjct: 111 MGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES 170
Query: 139 PGLMPLAMSKILSICQ---STGSTAEI--SYYEVYMDRCYDLL--EVKTKEISILDDKDG 191
G++P + + + + G EI ++ E+Y + YDLL E K EI + +
Sbjct: 171 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 230
Query: 192 QLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSK 251
+++ ++ V + + R A T N+ SSRSH V + + + +
Sbjct: 231 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE 290
Query: 252 AALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRES 311
++ G +NL+DLAG+E + + R+ E+ IN+SL L+NVI AL + +PYR S
Sbjct: 291 ISV-GSINLVDLAGSESPKTST----RMTETKNINRSLSELTNVILALLQKQDHIPYRNS 345
Query: 312 KLTRILQDSLGGTSHALMVACLNPGE--YQESVHTVSLAA-----------RSRHISNTL 358
KLT +L SLGG S LM ++P + +QESV ++ AA R+R+++N++
Sbjct: 346 KLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSV 405
Query: 359 PSA 361
++
Sbjct: 406 ANS 408
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 112/363 (30%), Positives = 178/363 (49%), Gaps = 52/363 (14%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSF 87
+RV R+RP L E N +CC + + ++E V L+ D Q S
Sbjct: 61 IRVFCRIRPPLESE-----ENRMCC-------TWTYHDESTVELQSIDA------QAKSK 102
Query: 88 FGQEDESVSKIF---------YSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEER 138
GQ+ S ++F + V+PLI G N +FAYG TGSGKTYTM G E
Sbjct: 103 MGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES 162
Query: 139 PGLMPLAMSKILSICQ---STGSTAEI--SYYEVYMDRCYDLL--EVKTKEISILDDKDG 191
G++P + + + + G EI ++ E+Y + YDLL E K EI + +
Sbjct: 163 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 222
Query: 192 QLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSK 251
+++ ++ V + + R A T N+ SSRSH V + + + +
Sbjct: 223 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE 282
Query: 252 AALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRES 311
++ G +NL+DLAG+E + + R+ E+ IN+SL L+NVI AL + +PYR S
Sbjct: 283 ISV-GSINLVDLAGSESPKTST----RMTETKNINRSLSELTNVILALLQKQDHIPYRNS 337
Query: 312 KLTRILQDSLGGTSHALMVACLNPGE--YQESVHTVSLAA-----------RSRHISNTL 358
KLT +L SLGG S LM ++P + +QESV ++ AA R+R+++N++
Sbjct: 338 KLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSV 397
Query: 359 PSA 361
++
Sbjct: 398 ANS 400
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 145 bits (366), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 115/351 (32%), Positives = 176/351 (50%), Gaps = 41/351 (11%)
Query: 27 KVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNE-----EVAVYLKDPDTIRSEC 81
++ V VR RP QE+A K I IS+ + L +E ++ YL++ ++ C
Sbjct: 52 RICVCVRKRPLNKQELAKK---EIDVISIPSKCLLLVHEPKLKVDLTKYLEN----QAFC 104
Query: 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQG------S 135
+ F E S ++ PL+ IF G AT FAYG TGSGKT+TM G
Sbjct: 105 F---DFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQ 161
Query: 136 EERPGLMPLAMSKILSI----C-QSTGSTAEISYYEVYMDRCYDLLEVKTKEISILDDKD 190
G+ +A + + C + G ++++E+Y + +DLL K K + +L+D
Sbjct: 162 NASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAK-LRVLEDGK 220
Query: 191 GQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDS 250
Q+ + GL VNS + ++ G R T N SSRSH I + +
Sbjct: 221 QQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR------A 274
Query: 251 KAALTGKLNLIDLAGNEDNRRTCNEGIRL-LESAKINQSLFALSNVIHALNNNKPRVPYR 309
K + GK +L+DLAGNE T + + +E A+IN+SL AL I AL NK P+R
Sbjct: 275 KGRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFR 334
Query: 310 ESKLTRILQDS-LGGTSHALMVACLNPG----EYQESVHTVSLAARSRHIS 355
ESKLT++L+DS +G S M+A ++PG EY +++T+ A R + +S
Sbjct: 335 ESKLTQVLRDSFIGENSRTCMIATISPGISSCEY--TLNTLRYADRVKELS 383
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/363 (30%), Positives = 177/363 (48%), Gaps = 52/363 (14%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSF 87
+RV R+RP L E N +CC + + ++E V L+ D Q S
Sbjct: 58 IRVFCRIRPPLESE-----ENRMCC-------TWTYHDESTVELQSIDA------QAKSK 99
Query: 88 FGQEDESVSKIF---------YSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEER 138
GQ+ S ++F + V+PLI G N +FAYG TGSGKTYTM G E
Sbjct: 100 MGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPES 159
Query: 139 PGLMPLAMSKILSICQ---STGSTAEI--SYYEVYMDRCYDLL--EVKTKEISILDDKDG 191
G++P + + + + G EI ++ E+Y + YDLL E K EI + +
Sbjct: 160 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 219
Query: 192 QLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSK 251
+++ ++ V + + R A T N+ SSRSH V + + + +
Sbjct: 220 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE 279
Query: 252 AALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRES 311
++ G +NL+DLAG+E + + R+ E+ I +SL L+NVI AL + +PYR S
Sbjct: 280 ISV-GSINLVDLAGSESPKTST----RMTETKNIKRSLSELTNVILALLQKQDHIPYRNS 334
Query: 312 KLTRILQDSLGGTSHALMVACLNPGE--YQESVHTVSLAA-----------RSRHISNTL 358
KLT +L SLGG S LM ++P + +QESV ++ AA R+R+++N++
Sbjct: 335 KLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSV 394
Query: 359 PSA 361
++
Sbjct: 395 ANS 397
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/340 (31%), Positives = 167/340 (49%), Gaps = 41/340 (12%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSF 87
+RV R+RP L E N +CC + + ++E V L+ D Q S
Sbjct: 58 IRVFCRIRPPLESE-----ENRMCC-------TWTYHDESTVELQSIDA------QAKSK 99
Query: 88 FGQEDESVSKIF---------YSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEER 138
GQ+ S ++F + V+PLI G N +FAYG +GSGKTYTM G E
Sbjct: 100 MGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPES 159
Query: 139 PGLMPLAMSKILSICQ---STGSTAEI--SYYEVYMDRCYDLL--EVKTKEISILDDKDG 191
G++P + + + + G EI ++ E+Y + YDLL E K EI + +
Sbjct: 160 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 219
Query: 192 QLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSK 251
+++ ++ V + + R A T N+ SSRSH V + + + +
Sbjct: 220 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQE 279
Query: 252 AALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRES 311
++ G +NL+DLAG+E + + R+ E+ IN+SL L+NVI AL + +PYR S
Sbjct: 280 ISV-GSINLVDLAGSESPKTST----RMTETKNINRSLSELTNVILALLQKQDHIPYRNS 334
Query: 312 KLTRILQDSLGGTSHALMVACLNPGE--YQESVHTVSLAA 349
KLT +L SLGG S LM ++P + +QESV ++ AA
Sbjct: 335 KLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAA 374
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 114/351 (32%), Positives = 174/351 (49%), Gaps = 41/351 (11%)
Query: 27 KVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNE-----EVAVYLKDPDTIRSEC 81
++ V VR RP QE+A K I ISV + L +E ++ YL++ ++ C
Sbjct: 72 RICVCVRKRPLNKQELAKK---EIDVISVPSKCLLLVHEPKLKVDLTKYLEN----QAFC 124
Query: 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQG------S 135
+ F E S ++ PL+ IF G AT FAYG TGSGKT+TM G
Sbjct: 125 F---DFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQ 181
Query: 136 EERPGLMPLAMSKILSI-----CQSTGSTAEISYYEVYMDRCYDLLEVKTKEISILDDKD 190
G+ +A + + ++ ++++E+Y + +DLL K K + +L+D
Sbjct: 182 NASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAK-LRVLEDSR 240
Query: 191 GQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDS 250
Q+ + GL V + ++ + G R T N SSRSH I + T
Sbjct: 241 QQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRT------ 294
Query: 251 KAALTGKLNLIDLAGNEDNRRTCNEGIRL-LESAKINQSLFALSNVIHALNNNKPRVPYR 309
K L GK +L+DLAGNE T + + +E A+IN+SL AL I AL NK P+R
Sbjct: 295 KGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFR 354
Query: 310 ESKLTRILQDS-LGGTSHALMVACLNPG----EYQESVHTVSLAARSRHIS 355
ESKLT++L+DS +G S M+A ++PG EY +++T+ A R + +S
Sbjct: 355 ESKLTQVLRDSFIGENSRTCMIAMISPGISSCEY--TLNTLRYADRVKELS 403
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 114/348 (32%), Positives = 172/348 (49%), Gaps = 41/348 (11%)
Query: 30 VIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNE-----EVAVYLKDPDTIRSECYQL 84
V VR RP QE+A K I ISV + L +E ++ YL++ ++ C+
Sbjct: 3 VCVRKRPLNKQELAKK---EIDVISVPSKCLLLVHEPKLKVDLTKYLEN----QAFCF-- 53
Query: 85 DSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQG------SEER 138
F E S ++ PL+ IF G AT FAYG TGSGKT+TM G
Sbjct: 54 -DFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNAS 112
Query: 139 PGLMPLAMSKILSI-----CQSTGSTAEISYYEVYMDRCYDLLEVKTKEISILDDKDGQL 193
G+ +A + + ++ ++++E+Y + +DLL K K + +L+D Q+
Sbjct: 113 KGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAK-LRVLEDSRQQV 171
Query: 194 HLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAA 253
+ GL V + ++ + G R T N SSRSH I + T K
Sbjct: 172 QVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRT------KGR 225
Query: 254 LTGKLNLIDLAGNEDNRRTCNEGIRL-LESAKINQSLFALSNVIHALNNNKPRVPYRESK 312
L GK +L+DLAGNE T + + +E A+IN+SL AL I AL NK P+RESK
Sbjct: 226 LHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESK 285
Query: 313 LTRILQDS-LGGTSHALMVACLNPG----EYQESVHTVSLAARSRHIS 355
LT++L+DS +G S M+A ++PG EY +++T+ A R + +S
Sbjct: 286 LTQVLRDSFIGENSRTCMIAMISPGISSCEY--TLNTLRYADRVKELS 331
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 108/365 (29%), Positives = 194/365 (53%), Gaps = 37/365 (10%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNE-----EVAVYLKDPDTIRSECY 82
++V+VR RP E K+ + I+V + +L +E ++ Y++ R E +
Sbjct: 2 IKVVVRKRPLSELEKKKKDSD---IITVKNNCTLYIDEPRYKVDMTKYIE-----RHE-F 52
Query: 83 QLDSFFGQEDESVSK--IFYSEVNPLIPGIF-HGRNATVFAYGATGSGKTYTMQGSE--- 136
+D F D++V ++ + + PLI ++ +G + FAYG TGSGKTYTM GS+
Sbjct: 53 IVDKVF---DDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYG 109
Query: 137 --ERPGLMPLAMSKILSIC----QSTGSTAEISYYEVYMDRCYDLLEVKTKEISILDDKD 190
+ PG+ A I + + IS+YE+Y + YDLL+ K K ++ L++
Sbjct: 110 QSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQ-KRKMVAALENGK 168
Query: 191 GQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDS 250
++ +K L + V + E G+ RK+ ND SSRSH +L I L D +
Sbjct: 169 KEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNID----LKDIN 224
Query: 251 KAALTGKLNLIDLAGNEDNRRTCNEGIRL-LESAKINQSLFALSNVIHALNNNKPRVPYR 309
K GK+ IDLAG+E T ++ + + A IN+SL AL I A++++K +P+R
Sbjct: 225 KNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFR 284
Query: 310 ESKLTRILQDSLGGTSHALMVACLNPGEY--QESVHTVSLAARSRHISNTLPSAQKVQTP 367
+S+LT++L+D G S ++M+A ++P +++++T+ ++R ++ N+ + + P
Sbjct: 285 DSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKPIPNP 344
Query: 368 MVKID 372
++ +D
Sbjct: 345 LLGLD 349
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/283 (36%), Positives = 150/283 (53%), Gaps = 21/283 (7%)
Query: 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGL 141
+ D F E E + + + E++ LI G N VFAYG TGSGKT+TM S G+
Sbjct: 432 FLFDKIF--EREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM--SHPTNGM 487
Query: 142 MPLAMSKILSICQ-----STGSTAEISYYEVYMDRCYDLLEVK----TKEISILDDKDGQ 192
+PL++ KI + + T + E+Y + DLL K TK DD G+
Sbjct: 488 IPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGK 547
Query: 193 LHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDS-- 250
+ +S + + S + I ++ ++R A T ND SSRSH + +I L G +S
Sbjct: 548 TTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIID---LQGYNSLT 604
Query: 251 KAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALN-NNKPRVPYR 309
K + G LNLIDLAG+E + EG RL E+ IN+SL L +VIH+LN + VPYR
Sbjct: 605 KESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYR 664
Query: 310 ESKLTRILQDSLGGTSHALMVACLNP--GEYQESVHTVSLAAR 350
SKLT +L+ SLGG S LM ++P + E+++++ A +
Sbjct: 665 NSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATK 707
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 173/349 (49%), Gaps = 39/349 (11%)
Query: 27 KVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNE-----EVAVYLKDPDTIRSEC 81
++ V VR RP +E K+ + I++ + + +E ++ YL++ +
Sbjct: 90 RICVCVRKRPLNKKETQMKD---LDVITIPSKDVVMVHEPKQKVDLTRYLEN------QT 140
Query: 82 YQLDSFFGQEDESVSKIFYS-EVNPLIPGIFHGRNATVFAYGATGSGKTYTMQG------ 134
++ D F +D + +++ Y PL+ IF AT FAYG TGSGKT+TM G
Sbjct: 141 FRFDYAF--DDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKN 198
Query: 135 SEERPGLMPLAMSKILSICQSTGST-----AEISYYEVYMDRCYDLLEVKTKEISILDDK 189
+ G+ LA + + + +++E+Y + +DLL KTK + +L+D
Sbjct: 199 QDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTK-LRVLEDG 257
Query: 190 DGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDD 249
Q+ + GL V + + ++ G R T N SSRSH V I +
Sbjct: 258 KQQVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILR------ 311
Query: 250 SKAALTGKLNLIDLAGNEDNRRTCNEGIRL-LESAKINQSLFALSNVIHALNNNKPRVPY 308
K L GK +LIDLAGNE T + + LE A+IN+SL AL I AL NKP P+
Sbjct: 312 RKGKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPF 371
Query: 309 RESKLTRILQDS-LGGTSHALMVACLNPG--EYQESVHTVSLAARSRHI 354
R SKLT++L+DS +G S M+A ++PG + +++T+ A R + +
Sbjct: 372 RASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 109/351 (31%), Positives = 165/351 (47%), Gaps = 45/351 (12%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRG----SLSCNEEVAVYLKDPDTIRSECYQ 83
+RV RVRP L E S I + SL+ N ++ I S +Q
Sbjct: 7 IRVYCRVRPPLLNE---PQDMSHILIEKFNEAKGAQSLTIN-------RNEGRILSYNFQ 56
Query: 84 LDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMP 143
D F E +K + E+ L+ G N +FAYG TGSGKTYTM + + G++P
Sbjct: 57 FDMIF--EPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD--GMIP 112
Query: 144 LAMSKILSIC-----QSTGSTAEISYYEVYMDRCYDLLEVKTKEISILDDKDGQLH---- 194
+ +S I + E Y E+Y + DLL +I + D Q H
Sbjct: 113 MTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRH 172
Query: 195 --------LKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLL 246
+ ++R+ + S ++ I + + R A T N+ SSRSH V ++ ++
Sbjct: 173 DHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHIN--- 229
Query: 247 GDDSKAALT--GKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNN--- 301
G + T GKLNL+DLAG+E + G RL E+ IN+SL L +VI+ALN
Sbjct: 230 GRNLHTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDA 289
Query: 302 NKPRVPYRESKLTRILQDSLGGTSHALMVACL--NPGEYQESVHTVSLAAR 350
K +P+R SKLT +LQ SL G S LM + +P E+++++ A++
Sbjct: 290 GKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASK 340
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 129 bits (323), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 108/350 (30%), Positives = 172/350 (49%), Gaps = 44/350 (12%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSF 87
+RV +R+RP L + S+ ++ D S + EV K +T + ++ D
Sbjct: 61 IRVYLRIRPALKN--LENSDTSLINVNEFDDNSGVQSMEVT---KIQNTAQVHEFKFDKI 115
Query: 88 FGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMS 147
F Q+D +V + EV L+ G N +FAYG TGSGKT+TM + G++P +S
Sbjct: 116 FDQQDTNVD--VFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGD--GIIPSTIS 171
Query: 148 KILSIC---QSTGSTAEIS--YYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGLSR-- 200
I + ++ G +++ + E+Y + DLL + +D + LK R
Sbjct: 172 HIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNN-----NKEDTSIGLKHEIRHD 226
Query: 201 -------------VPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLG 247
V + S + I + + R A T N+ SSRSH + +I +S G
Sbjct: 227 QETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS---G 283
Query: 248 DDSK--AALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHAL---NNN 302
++K A G LNL+DLAG+E + G RL E+ IN+SL AL +VIHAL ++
Sbjct: 284 SNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDST 343
Query: 303 KPRVPYRESKLTRILQDSLGGTSHALMVACLNP--GEYQESVHTVSLAAR 350
K +P+R SKLT +LQ SL G S LM ++P E+++++ A++
Sbjct: 344 KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 393
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 115/362 (31%), Positives = 165/362 (45%), Gaps = 42/362 (11%)
Query: 23 STSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEE-VAVYLKDPDTIRSEC 81
S +RV RVRP L E G + + G ++ + L D R
Sbjct: 19 SLKGNIRVFCRVRPVLPGEPTPPPG-----LLLFPSGPGGPSDPPTRLSLSRSDERRGTL 73
Query: 82 YQLDSFFGQEDESVSKIF---------YSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132
+ + D S ++F + E+ L+ G +FAYG TGSGKT+TM
Sbjct: 74 SGAPAPPPRHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTM 133
Query: 133 QGSE----ERPGLMPLAMSKILSICQ---STGSTAEI--SYYEVYMDRCYDLLEVKTK-- 181
+G + GL+P A+ + S+ Q G T SY E+Y + DLL T+
Sbjct: 134 EGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKG 193
Query: 182 -----EISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHG 236
EI +L + VPV+ E + Q R VA T N+ SSRSH
Sbjct: 194 QGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHS 253
Query: 237 VLVISVSTLLGDDSKAALT--GKLNLIDLAGNE--DNRRTCNEGIR--LLESAKINQSLF 290
V + +S G+ S L L+L+DLAG+E D G R L E+ IN SL
Sbjct: 254 VFQLQIS---GEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLS 310
Query: 291 ALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPGE--YQESVHTVSLA 348
L VI AL+N + VPYR SKLT +LQ+SLGG++ LM ++P E ES++++ A
Sbjct: 311 TLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFA 370
Query: 349 AR 350
++
Sbjct: 371 SK 372
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 171/347 (49%), Gaps = 38/347 (10%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSF 87
+RV R+RP L + S+ ++ D S + EV K +T + ++ D
Sbjct: 16 IRVYCRIRPALKN--LENSDTSLINVNEFDDNSGVQSMEVT---KIQNTAQVHEFKFDKI 70
Query: 88 FGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMS 147
F Q+D +V + EV L+ G N +FAYG TGSGKT+TM + G++P +S
Sbjct: 71 FDQQDTNVD--VFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTIS 126
Query: 148 KILSIC---QSTGSTAEIS--YYEVYMDRCYDLL--EVKTKEISILDDKDGQLHLKGLS- 199
I + ++ G +++ + E+Y + DLL + KE + + K H +
Sbjct: 127 HIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKT 186
Query: 200 ---------RVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDS 250
++ M E I + + R A T N+ SSRSH + +I +S G ++
Sbjct: 187 TTITNVTSCKLESEEMVEI--ILKKANKLRSTASTASNEHSSRSHSIFIIHLS---GSNA 241
Query: 251 K--AALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHAL---NNNKPR 305
K A G LNL+DLAG+E + G RL E+ IN+SL L +VIHAL ++ K
Sbjct: 242 KTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRH 301
Query: 306 VPYRESKLTRILQDSLGGTSHALMVACLNP--GEYQESVHTVSLAAR 350
+P+R SKLT +LQ SL G S LM ++P E+++++ A++
Sbjct: 302 IPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 348
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 171/347 (49%), Gaps = 38/347 (10%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSF 87
+RV R+RP L + S+ ++ D S + EV K +T + ++ D
Sbjct: 4 IRVYCRIRPALKN--LENSDTSLINVNEFDDNSGVQSMEVT---KIQNTAQVHEFKFDKI 58
Query: 88 FGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMS 147
F Q+D +V + EV L+ G N +FAYG TGSGKT+TM + G++P +S
Sbjct: 59 FDQQDTNVD--VFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTIS 114
Query: 148 KILSIC---QSTGSTAEIS--YYEVYMDRCYDLL--EVKTKEISILDDKDGQLHLKGLS- 199
I + ++ G +++ + E+Y + DLL + KE + + K H +
Sbjct: 115 HIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKT 174
Query: 200 ---------RVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDS 250
++ M E I + + R A T N+ SSRSH + +I +S G ++
Sbjct: 175 TTITNVTSCKLESEEMVEI--ILKKANKLRSTASTASNEHSSRSHSIFIIHLS---GSNA 229
Query: 251 K--AALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHAL---NNNKPR 305
K A G LNL+DLAG+E + G RL E+ IN+SL L +VIHAL ++ K
Sbjct: 230 KTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRH 289
Query: 306 VPYRESKLTRILQDSLGGTSHALMVACLNP--GEYQESVHTVSLAAR 350
+P+R SKLT +LQ SL G S LM ++P E+++++ A++
Sbjct: 290 IPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 336
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 147/291 (50%), Gaps = 27/291 (9%)
Query: 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGL 141
++ D F Q+ E+ +IF EV LI G N +FAYG TGSGKTYTM + G+
Sbjct: 76 FKFDKIFDQQ-ETNDEIF-KEVGQLIQSSLDGYNVCIFAYGQTGSGKTYTMLNPGD--GI 131
Query: 142 MPLAMSKILSICQ---STGSTAEIS--YYEVYMDRCYDLLE------------VKTKEIS 184
+P ++ I S + G + ++S + E+Y + DLL +K
Sbjct: 132 VPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEI 191
Query: 185 ILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVST 244
D + ++ ++ ++S ++ R + R A T N+ SSRSH + +I +
Sbjct: 192 RHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEG 251
Query: 245 LLGDDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNN--- 301
+ + G LNL+DLAG+E + G RL E+ IN+SL L +VIHALN+
Sbjct: 252 K-NEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDG 310
Query: 302 NKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSLAAR 350
K +P+R SKLT +LQ SL G+S LM ++P E+++++ A++
Sbjct: 311 QKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASK 361
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 170/347 (48%), Gaps = 38/347 (10%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSF 87
+RV R+RP L + S+ ++ D S + EV K +T + ++ D
Sbjct: 5 IRVYCRIRPALKN--LENSDTSLINVNEFDDNSGVQSMEVT---KIQNTAQVHEFKFDKI 59
Query: 88 FGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMS 147
F Q+D +V + EV L+ G N +FAYG TGSGKT+TM + G++P +S
Sbjct: 60 FDQQDTNVD--VFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTIS 115
Query: 148 KILSIC---QSTGSTAEIS--YYEVYMDRCYDLL--EVKTKEISILDDKDGQLHLKGLS- 199
I + ++ G +++ + E+Y + DLL + KE + + K H +
Sbjct: 116 HIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKT 175
Query: 200 ---------RVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDS 250
++ M E I + + R A T N+ SSRSH + +I +S G ++
Sbjct: 176 TTITNVTSCKLESEEMVEI--ILKKANKLRSTASTASNEHSSRSHSIFIIHLS---GSNA 230
Query: 251 K--AALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHAL---NNNKPR 305
K A G LNL+DLAG+E + G RL E+ I +SL L +VIHAL ++ K
Sbjct: 231 KTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRH 290
Query: 306 VPYRESKLTRILQDSLGGTSHALMVACLNP--GEYQESVHTVSLAAR 350
+P+R SKLT +LQ SL G S LM ++P E+++++ A++
Sbjct: 291 IPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 168/350 (48%), Gaps = 44/350 (12%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSF 87
+RV R+RP L + S+ ++ D S + EV K +T + ++ D
Sbjct: 5 IRVYCRIRPALKN--LENSDTSLINVNEFDDNSGVQSMEVT---KIQNTAQVHEFKFDKI 59
Query: 88 FGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMS 147
F Q+D +V + EV L+ G N +FAYG TGSGKT+TM + G++P +S
Sbjct: 60 FDQQDTNVD--VFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTIS 115
Query: 148 KILSIC---QSTGSTAEIS--YYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGLSR-- 200
I + ++ G +++ + E+Y + DLL + +D + LK R
Sbjct: 116 HIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNN-----NKEDTSIGLKHEIRHD 170
Query: 201 -------------VPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLG 247
+ S + I + + R A T N+ SSRSH + +I +S G
Sbjct: 171 QETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLS---G 227
Query: 248 DDSK--AALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHAL---NNN 302
++K A G LNL+DLAG+ + G RL E+ IN+SL L +VIHAL ++
Sbjct: 228 SNAKTGAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDST 287
Query: 303 KPRVPYRESKLTRILQDSLGGTSHALMVACLNP--GEYQESVHTVSLAAR 350
K +P+R SKLT +LQ SL G S LM ++P E+++++ A++
Sbjct: 288 KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 106/347 (30%), Positives = 170/347 (48%), Gaps = 38/347 (10%)
Query: 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSF 87
+RV R+RP L + S+ ++ D S + EV K +T + ++ D
Sbjct: 5 IRVYCRIRPALKN--LENSDTSLINVNEFDDNSGVQSMEVT---KIQNTAQVHEFKFDKI 59
Query: 88 FGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMS 147
F Q+D +V + EV L+ G N +FAYG TGSGKT+TM + G++P +S
Sbjct: 60 FDQQDTNVD--VFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTIS 115
Query: 148 KILSIC---QSTGSTAEIS--YYEVYMDRCYDLL--EVKTKEISILDDKDGQLHLKGLS- 199
I + ++ G +++ + E+Y + DLL + KE + + K H +
Sbjct: 116 HIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKT 175
Query: 200 ---------RVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDS 250
++ M E I + + R A T N+ SS SH + +I +S G ++
Sbjct: 176 TTITNVTSCKLESEEMVEI--ILKKANKLRSTASTASNEHSSASHSIFIIHLS---GSNA 230
Query: 251 K--AALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHAL---NNNKPR 305
K A G LNL+DLAG+E + G RL E+ IN+SL L +VIHAL ++ K
Sbjct: 231 KTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRH 290
Query: 306 VPYRESKLTRILQDSLGGTSHALMVACLNP--GEYQESVHTVSLAAR 350
+P+R SKLT +LQ SL G S LM ++P E+++++ A++
Sbjct: 291 IPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASK 337
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 153/291 (52%), Gaps = 27/291 (9%)
Query: 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEE---R 138
++LD D S ++ + ++ G N T+ YG TG+GKTYTM G+ E
Sbjct: 74 FKLDGVL--HDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKH 131
Query: 139 PGLMPLAMSKILSICQ---STGSTAEISYYEVYMDRCYDLLEV------KTKEISILDDK 189
G++P A+ ++ + + + T +SY E+Y + +DLL ++I+++
Sbjct: 132 RGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENP 191
Query: 190 DGQLHLKGLSRVPVNSMTE--FQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISV---ST 244
G + +KGLS V + S E F +F R +HT +N SSRSH + I + S
Sbjct: 192 QG-VFIKGLS-VHLTSQEEDAFSLLFEGETNRIIASHT-MNKNSSRSHCIFTIYLEAHSR 248
Query: 245 LLGDDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNK- 303
L ++ +T K+NL+DLAG+E ++ +EG L E+ IN+SL L I AL + K
Sbjct: 249 TLSEEK--YITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKR 306
Query: 304 PRVPYRESKLTRILQDSLGGTSHALMVACL--NPGEYQESVHTVSLAARSR 352
+P+R+ KLT L+DSLGG + ++V + + +E++ ++ A+R +
Sbjct: 307 DHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMK 357
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 129/256 (50%), Gaps = 25/256 (9%)
Query: 94 SVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSE------ERPGLMPLAMS 147
S +++ + + PL+ + G T AYG TG+GK+Y+M + E G++P A+
Sbjct: 74 SQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALG 133
Query: 148 KILSICQSTGSTAE------ISYYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGLSRV 201
I + + S+ E+Y ++ +DLL T + ++ + + + +
Sbjct: 134 DIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLG-STPHMPMVAAR-----CQRCTCL 187
Query: 202 PVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTGKLNLI 261
P++S + I G + R+V T +N SSRSH ++ I V + ++N++
Sbjct: 188 PLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKS-------KTHHSRMNIV 240
Query: 262 DLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSL 321
DLAG+E RRT +EG+ E IN L +++ V+ ++ +PYR+S LT +LQ SL
Sbjct: 241 DLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASL 300
Query: 322 GGTSHALMVACLNPGE 337
S+ +AC++P +
Sbjct: 301 TAQSYLTFLACISPHQ 316
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 129/256 (50%), Gaps = 25/256 (9%)
Query: 94 SVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSE------ERPGLMPLAMS 147
S +++ + + PL+ + G T AYG TG+GK+Y+M + E G++P A+
Sbjct: 74 SQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALG 133
Query: 148 KILSICQSTGSTAE------ISYYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGLSRV 201
I + + S+ E+Y ++ +DLL T + ++ + + + +
Sbjct: 134 DIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLG-STPHMPMVAAR-----CQRCTCL 187
Query: 202 PVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTGKLNLI 261
P++S + I G + R+V T +N SSRSH ++ I V + ++N++
Sbjct: 188 PLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKS-------KTHHSRMNIV 240
Query: 262 DLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSL 321
DLAG+E RRT +EG+ E IN L +++ V+ ++ +PYR+S LT +LQ SL
Sbjct: 241 DLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASL 300
Query: 322 GGTSHALMVACLNPGE 337
S+ +AC++P +
Sbjct: 301 TAQSYLTFLACISPHQ 316
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 98/169 (57%), Gaps = 8/169 (4%)
Query: 106 LIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLA-------MSKILSICQSTGS 158
++ + G N T+FAYG T SGKT+TM+G P LM + I S+ ++
Sbjct: 69 IVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSMDENLEF 128
Query: 159 TAEISYYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQ 218
++SY+E+Y+D+ DLL+V +++ +DK+ ++KG + V+S E ++ G
Sbjct: 129 HIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKA 188
Query: 219 RRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTGKLNLIDLAGNE 267
R VA T +N+ SSRSH + +I++ +++ L+GKL L+DLAG+E
Sbjct: 189 NRHVAVTNMNEHSSRSHSIFLINIKQ-ENVETEKKLSGKLYLVDLAGSE 236
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 286 NQSLFALSNVIHAL-NNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPGEYQ--ESV 342
N+SL AL NVI AL K VPYR+SK+TRILQDSLGG +V C +P + E+
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 343 HTVSLAARSRHISNTL 358
T+ R++ I NT+
Sbjct: 61 STLMFGQRAKTIKNTV 76
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 285 INQSLFALSNVIHAL-NNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPGEYQ--ES 341
IN+SL AL NVI AL K VPYR+SK+TRILQDSL G +V C +P + E+
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAET 63
Query: 342 VHTVSLAARSRHISNTL 358
T+ R++ I NT+
Sbjct: 64 KSTLMFGQRAKTIKNTV 80
>pdb|1V02|E Chain E, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 438 LCVPFRNLLIDEGLGDSCSESHHMVANDTEEIT-AGKDGI-ISISSPRHLP 486
C F ++D GD ++S+HM A D + G D SIS PR LP
Sbjct: 108 FCHNFPEWIVDRSNGDVAADSYHMYAEDVRLLKEMGMDAYRFSISWPRILP 158
>pdb|1V02|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|B Chain B, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|C Chain C, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|D Chain D, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|F Chain F, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 438 LCVPFRNLLIDEGLGDSCSESHHMVANDTEEIT-AGKDGI-ISISSPRHLP 486
C F ++D GD ++S+HM A D + G D SIS PR LP
Sbjct: 108 FCHNFPEWIVDRSNGDVAADSYHMYAEDVRLLKEMGMDAYRFSISWPRILP 158
>pdb|1V03|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 438 LCVPFRNLLIDEGLGDSCSESHHMVANDTEEIT-AGKDGI-ISISSPRHLP 486
C F ++D GD ++S+HM A D + G D SIS PR LP
Sbjct: 108 FCHNFPEWIVDRSNGDVAADSYHMYAEDVRLLKEMGMDAYRFSISWPRILP 158
>pdb|1DZW|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant F131a
Length = 215
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 14 SKSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
+ + + N + V ++ R P + IAA GNSI C G+ +E VA+ LK+
Sbjct: 87 ANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPYATAGTRELSEHVALALKN 146
>pdb|2DUY|A Chain A, Crystal Structure Of Competence Protein Comea-related
Protein From Thermus Thermophilus Hb8
Length = 75
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 591 LNTASREELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLST 635
LN AS EEL L GIG LA I E R + V+ L ++ IG +T
Sbjct: 21 LNEASLEELXALPGIGPVLARRIVEGRPYARVEDLLKVKGIGPAT 65
>pdb|1E4C|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant S71q
Length = 215
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 14 SKSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
+ + + N + V ++ R P + IAA GNSI C G+ +E VA+ LK+
Sbjct: 87 ANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPYATFGTRELSEHVALALKN 146
>pdb|1E49|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant N29lS71A
Length = 215
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 14 SKSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
+ + + N + V ++ R P + IAA GNSI C G+ +E VA+ LK+
Sbjct: 87 ANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPYATFGTRELSEHVALALKN 146
>pdb|1E4A|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant Del(27)
Length = 214
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 14 SKSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
+ + + N + V ++ R P + IAA GNSI C G+ +E VA+ LK+
Sbjct: 86 ANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPYATFGTRELSEHVALALKN 145
>pdb|1DZX|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant R212a
Length = 215
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 14 SKSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
+ + + N + V ++ R P + IAA GNSI C G+ +E VA+ LK+
Sbjct: 87 ANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPYATFGTRELSEHVALALKN 146
>pdb|1E4B|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant N29q
Length = 215
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 14 SKSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
+ + + N + V ++ R P + IAA GNSI C G+ +E VA+ LK+
Sbjct: 87 ANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPYATFGTRELSEHVALALKN 146
>pdb|1DZU|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant T26a
Length = 215
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 14 SKSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
+ + + N + V ++ R P + IAA GNSI C G+ +E VA+ LK+
Sbjct: 87 ANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPYATFGTRELSEHVALALKN 146
>pdb|1E47|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant E73q
Length = 215
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 14 SKSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
+ + + N + V ++ R P + IAA GNSI C G+ +E VA+ LK+
Sbjct: 87 ANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPYATFGTRELSEHVALALKN 146
>pdb|1FUA|A Chain A, L-Fuculose 1-Phosphate Aldolase Crystal Form T
pdb|2FUA|A Chain A, L-Fuculose 1-Phosphate Aldolase Crystal Form T With Cobalt
pdb|3FUA|A Chain A, L-Fuculose-1-Phosphate Aldolase Crystal Form K
pdb|4FUA|A Chain A, L-fuculose-1-phosphate Aldolase Complex With Pgh
Length = 215
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 14 SKSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
+ + + N + V ++ R P + IAA GNSI C G+ +E VA+ LK+
Sbjct: 87 ANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPYATFGTRELSEHVALALKN 146
>pdb|1DZY|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant E214a
Length = 215
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 14 SKSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
+ + + N + V ++ R P + IAA GNSI C G+ +E VA+ LK+
Sbjct: 87 ANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPYATFGTRELSEHVALALKN 146
>pdb|1E46|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant E73s
Length = 215
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 14 SKSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
+ + + N + V ++ R P + IAA GNSI C G+ +E VA+ LK+
Sbjct: 87 ANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGNSIPCAPYATFGTRELSEHVALALKN 146
>pdb|1CIY|A Chain A, Insecticidal Toxin: Structure And Channel Formation
Length = 590
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 16/108 (14%)
Query: 279 LLESAKINQSLFALSNV---IHALNNNKPRVPYRESKLTRIL-----QDS----LGGTSH 326
+L S NQ LF L +L N P YR+ L QD+ G SH
Sbjct: 342 ILGSGPNNQELFVLDGTEFSFASLTTNLPSTIYRQRGTVDSLDVIPPQDNSVPPRAGFSH 401
Query: 327 AL----MVACLNPGEYQESVHTVSLAARSRHISNTLPSAQKVQTPMVK 370
L M++ Y T S RS +N +PS+Q Q P+ K
Sbjct: 402 RLSHVTMLSQAAGAVYTLRAPTFSWQHRSAEFNNIIPSSQITQIPLTK 449
>pdb|1DZV|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant Y113fY209F
Length = 215
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 14 SKSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
+ + + N + V ++ R P + IAA GNSI C G+ +E VA+ LK+
Sbjct: 87 ANAVVHNHAVHCTAVSILNRSIPAIHFMIAAAGGNSIPCAPYATFGTRELSEHVALALKN 146
>pdb|1E48|P Chain P, L-Fuculose 1-Phosphate Aldolase From Escherichia Coli
Mutant E73qY113FY209F
Length = 215
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 14 SKSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
+ + + N + V ++ R P + IAA GNSI C G+ +E VA+ LK+
Sbjct: 87 ANAVVHNHAVHCTAVSILNRSIPAIHFMIAAAGGNSIPCAPYATFGTRELSEHVALALKN 146
>pdb|1DZZ|P Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli
Mutant Y113f
Length = 215
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 14 SKSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD 73
+ + + N + V ++ R P + IAA GNSI C G+ +E VA+ LK+
Sbjct: 87 ANAVVHNHAVHCTAVSILNRSIPAIHFMIAAAGGNSIPCAPYATFGTRELSEHVALALKN 146
>pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide
Excision Repair Enzyme
Length = 665
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 19/80 (23%)
Query: 122 GATGSGKTYTMQGSEE---RPGLMPLAMSKILSICQSTGSTAE----------ISYYEVY 168
GATG+GKT TM E RP L+ LA +KIL+ Q E ISYY+ Y
Sbjct: 36 GATGTGKTVTMAKVIEALGRPALV-LAPNKILA-AQLAAEFRELFPENAVEYFISYYDYY 93
Query: 169 MDRCYDLLEVKTKEISILDD 188
Y V K++ I D
Sbjct: 94 QPEAY----VPGKDLYIEKD 109
>pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair
Enzyme Uvrb From Thermus Thermophilus
Length = 664
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 19/80 (23%)
Query: 122 GATGSGKTYTMQGSEE---RPGLMPLAMSKILSICQSTGSTAE----------ISYYEVY 168
GATG+GKT TM E RP L+ LA +KIL+ Q E ISYY+ Y
Sbjct: 35 GATGTGKTVTMAKVIEALGRPALV-LAPNKILA-AQLAAEFRELFPENAVEYFISYYDYY 92
Query: 169 MDRCYDLLEVKTKEISILDD 188
Y V K++ I D
Sbjct: 93 QPEAY----VPGKDLYIEKD 108
>pdb|3O0P|A Chain A, Pilus-Related Sortase C Of Group B Streptococcus
Length = 216
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 556 TCASNKFQPIGTPLDKFSARSIRLKNSLVQEYIDFLNTASREELVELKGIGQRLADYICE 615
T ++N+ Q K S + I + +L Q Y D LN E+ E K I + +A+Y
Sbjct: 4 TESNNQTQDFERAAKKLSQKEINRRMALAQAYNDSLNNVHLEDPYEKKRIQKGIAEYARM 63
Query: 616 LRQSSPVKSLSDLEKIG 632
L S + +S + KIG
Sbjct: 64 LEVSEKIGIIS-VPKIG 79
>pdb|1WKB|A Chain A, Crystal Structure Of Leucyl-Trna Synthetase From The
Archaeon Pyrococcus Horikoshii Reveals A Novel Editing
Domain Orientation
Length = 810
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 564 PIGTPLDKFSARSIRLKNSLVQEY-ID--FLNTASREELVELKGIGQRLADYICELRQSS 620
P P D + ++ + ++++Y ID + + L++L+G G A E
Sbjct: 326 PAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPA---VEEVNKL 382
Query: 621 PVKSLSDLEKIGLSTKQVYNLFGKAAKGIFDRPESATPSCQET 663
+KS D EK+ +TK +Y + KGIF P QE
Sbjct: 383 GIKSQKDKEKLEQATKTIYK--AEYHKGIFKVPPYEGKPVQEV 423
>pdb|1WZ2|A Chain A, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
pdb|1WZ2|B Chain B, The Crystal Structure Of Leucyl-Trna Synthetase And
Trna(Leucine) Complex
Length = 967
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 564 PIGTPLDKFSARSIRLKNSLVQEY-ID--FLNTASREELVELKGIGQRLADYICELRQSS 620
P P D + ++ + ++++Y ID + + L++L+G G A E
Sbjct: 326 PAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPA---VEEVNKL 382
Query: 621 PVKSLSDLEKIGLSTKQVYNLFGKAAKGIFDRPESATPSCQET 663
+KS D EK+ +TK +Y + KGIF P QE
Sbjct: 383 GIKSQKDKEKLEQATKTIYK--AEYHKGIFKVPPYEGKPVQEV 423
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,408,565
Number of Sequences: 62578
Number of extensions: 725226
Number of successful extensions: 1682
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1417
Number of HSP's gapped (non-prelim): 100
length of query: 667
length of database: 14,973,337
effective HSP length: 105
effective length of query: 562
effective length of database: 8,402,647
effective search space: 4722287614
effective search space used: 4722287614
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)