Query 005960
Match_columns 667
No_of_seqs 459 out of 2903
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 12:11:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bfn_A Kinesin-like protein KI 100.0 1.6E-85 5.6E-90 711.3 26.6 331 22-364 17-357 (388)
2 2vvg_A Kinesin-2; motor protei 100.0 4.3E-85 1.5E-89 701.3 29.0 328 25-364 3-345 (350)
3 2owm_A Nckin3-434, related to 100.0 2.2E-84 7.4E-89 714.8 30.2 333 23-363 35-422 (443)
4 1t5c_A CENP-E protein, centrom 100.0 3.6E-84 1.2E-88 694.4 28.6 326 24-364 2-338 (349)
5 3b6u_A Kinesin-like protein KI 100.0 2.1E-84 7.2E-89 700.2 26.3 335 17-362 12-361 (372)
6 1goj_A Kinesin, kinesin heavy 100.0 1.4E-83 4.9E-88 691.2 31.2 329 23-366 3-342 (355)
7 2y65_A Kinesin, kinesin heavy 100.0 4.6E-84 1.6E-88 696.9 26.5 330 19-364 4-343 (365)
8 3cob_A Kinesin heavy chain-lik 100.0 3.3E-83 1.1E-87 690.7 31.4 326 24-364 3-337 (369)
9 1x88_A Kinesin-like protein KI 100.0 1.1E-83 3.7E-88 693.4 25.5 332 22-362 4-358 (359)
10 1bg2_A Kinesin; motor protein, 100.0 9.6E-84 3.3E-88 685.3 24.6 315 21-354 2-325 (325)
11 2wbe_C Bipolar kinesin KRP-130 100.0 1.3E-83 4.4E-88 695.6 24.9 334 20-364 17-371 (373)
12 2zfi_A Kinesin-like protein KI 100.0 4E-83 1.4E-87 690.5 27.2 326 25-360 3-360 (366)
13 3lre_A Kinesin-like protein KI 100.0 1.2E-82 3.9E-87 684.4 29.6 327 23-354 7-355 (355)
14 4a14_A Kinesin, kinesin-like p 100.0 3.5E-82 1.2E-86 678.7 29.0 316 21-352 6-344 (344)
15 2h58_A Kinesin-like protein KI 100.0 6.4E-82 2.2E-86 672.6 29.8 319 24-355 2-329 (330)
16 3gbj_A KIF13B protein; kinesin 100.0 2.9E-82 1E-86 681.1 23.5 324 26-354 1-350 (354)
17 2heh_A KIF2C protein; kinesin, 100.0 3.3E-81 1.1E-85 677.5 26.8 320 20-356 45-384 (387)
18 1ry6_A Internal kinesin; kines 100.0 4.2E-81 1.4E-85 672.7 24.7 323 27-359 1-336 (360)
19 1f9v_A Kinesin-like protein KA 100.0 2.6E-80 8.7E-85 664.4 30.3 321 25-357 2-344 (347)
20 3t0q_A AGR253WP; kinesin, alph 100.0 1.8E-80 6.1E-85 666.3 29.0 321 24-356 3-346 (349)
21 2rep_A Kinesin-like protein KI 100.0 1E-80 3.6E-85 672.7 27.1 325 23-354 19-376 (376)
22 1v8k_A Kinesin-like protein KI 100.0 1.8E-80 6.1E-85 675.6 27.5 321 20-357 65-405 (410)
23 3nwn_A Kinesin-like protein KI 100.0 2.3E-80 7.9E-85 666.8 24.6 316 23-354 21-359 (359)
24 2nr8_A Kinesin-like protein KI 100.0 2.8E-80 9.5E-85 665.9 24.9 321 18-354 15-358 (358)
25 3u06_A Protein claret segregat 100.0 1.2E-78 3.9E-83 663.8 27.5 316 25-357 58-385 (412)
26 4etp_A Kinesin-like protein KA 100.0 2.3E-78 7.7E-83 661.0 27.1 322 25-357 58-400 (403)
27 3dc4_A Kinesin-like protein NO 100.0 1.2E-78 4E-83 650.1 24.0 313 15-356 11-337 (344)
28 4h1g_A Maltose binding protein 100.0 1.6E-73 5.5E-78 665.3 28.9 323 24-355 372-712 (715)
29 2kin_B Kinesin; motor protein, 99.9 6.7E-27 2.3E-31 207.0 4.9 81 283-363 2-85 (100)
30 3kin_B Kinesin heavy chain; mo 99.9 1.4E-24 4.8E-29 198.0 7.3 80 286-365 1-83 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 1E-22 3.6E-27 208.6 7.9 256 25-356 23-291 (298)
32 3arc_U Photosystem II 12 kDa e 99.4 8.3E-13 2.8E-17 116.1 6.8 60 585-647 14-74 (97)
33 1s5l_U Photosystem II 12 kDa e 99.3 2.1E-12 7.1E-17 118.7 6.1 59 586-647 52-114 (134)
34 2duy_A Competence protein come 99.2 9.4E-12 3.2E-16 104.3 6.5 58 586-646 16-74 (75)
35 2edu_A Kinesin-like protein KI 99.0 8.8E-11 3E-15 103.5 4.1 61 585-645 28-90 (98)
36 2i5h_A Hypothetical protein AF 99.0 1E-10 3.5E-15 114.3 3.4 60 593-652 128-197 (205)
37 3bzc_A TEX; helix-turn-helix, 98.7 1E-08 3.6E-13 119.6 6.4 64 585-648 496-561 (785)
38 3psf_A Transcription elongatio 98.2 4.4E-07 1.5E-11 108.6 3.7 64 585-648 700-771 (1030)
39 3psi_A Transcription elongatio 98.1 8.8E-07 3E-11 107.6 3.8 64 585-648 697-768 (1219)
40 3ci0_K Pseudopilin GSPK; gener 97.7 1.1E-05 3.6E-10 84.7 2.4 62 587-648 186-256 (298)
41 2bcq_A DNA polymerase lambda; 97.3 0.00014 4.7E-09 77.4 5.3 54 591-644 51-115 (335)
42 2fmp_A DNA polymerase beta; nu 96.9 0.00048 1.7E-08 73.2 4.2 53 592-644 52-117 (335)
43 2a1j_B DNA excision repair pro 96.7 0.00036 1.2E-08 60.1 1.3 62 585-646 20-85 (91)
44 1z00_A DNA excision repair pro 96.7 0.00047 1.6E-08 59.0 2.0 63 587-649 9-75 (89)
45 2ihm_A POL MU, DNA polymerase 96.7 0.00093 3.2E-08 71.7 4.5 53 592-644 56-121 (360)
46 1vq8_Y 50S ribosomal protein L 96.7 0.00025 8.4E-09 72.1 0.0 51 592-646 10-69 (241)
47 1kft_A UVRC, excinuclease ABC 96.5 0.00054 1.8E-08 57.2 0.5 58 588-645 15-76 (78)
48 1ixr_A Holliday junction DNA h 96.2 0.0018 6E-08 63.6 2.5 50 597-646 72-128 (191)
49 1x2i_A HEF helicase/nuclease; 96.2 0.0034 1.1E-07 51.3 3.7 52 596-647 13-68 (75)
50 2ztd_A Holliday junction ATP-d 96.0 0.0028 9.7E-08 63.1 2.8 52 597-648 88-146 (212)
51 1jms_A Terminal deoxynucleotid 96.0 0.0045 1.5E-07 66.9 4.5 53 592-644 75-140 (381)
52 1cuk_A RUVA protein; DNA repai 95.6 0.0067 2.3E-07 60.0 3.8 47 597-643 73-126 (203)
53 2a1j_A DNA repair endonuclease 95.4 0.006 2E-07 49.0 2.2 51 595-646 2-56 (63)
54 2w9m_A Polymerase X; SAXS, DNA 95.4 0.0093 3.2E-07 67.8 4.6 47 593-643 93-149 (578)
55 1z00_B DNA repair endonuclease 94.6 0.02 6.7E-07 48.8 3.3 50 590-645 11-69 (84)
56 3f2b_A DNA-directed DNA polyme 94.0 0.054 1.8E-06 65.2 6.4 60 587-646 946-1017(1041)
57 2bgw_A XPF endonuclease; hydro 93.9 0.052 1.8E-06 53.7 5.2 50 596-645 161-214 (219)
58 3c65_A Uvrabc system protein C 92.9 0.019 6.5E-07 57.6 0.0 52 594-645 170-224 (226)
59 3b0x_A DNA polymerase beta fam 91.4 0.17 5.7E-06 57.4 5.5 46 595-643 91-146 (575)
60 3ec2_A DNA replication protein 90.8 0.053 1.8E-06 51.0 0.5 50 82-133 7-56 (180)
61 2hnh_A DNA polymerase III alph 90.3 0.31 1.1E-05 58.2 6.6 59 586-644 811-885 (910)
62 1z00_A DNA excision repair pro 89.8 0.17 5.7E-06 42.9 2.8 39 589-628 43-81 (89)
63 2hpi_A DNA polymerase III alph 89.2 0.27 9.4E-06 60.1 5.0 58 586-643 868-940 (1220)
64 1wcn_A Transcription elongatio 88.9 0.36 1.2E-05 39.5 4.0 53 596-652 6-68 (70)
65 1x2i_A HEF helicase/nuclease; 88.9 0.32 1.1E-05 39.3 3.7 31 589-619 38-68 (75)
66 1ixr_A Holliday junction DNA h 88.7 0.2 6.8E-06 49.0 2.7 56 590-645 100-170 (191)
67 3ci0_K Pseudopilin GSPK; gener 88.3 0.54 1.8E-05 48.9 5.9 62 586-647 75-180 (298)
68 1cuk_A RUVA protein; DNA repai 88.2 0.22 7.6E-06 49.1 2.7 56 590-645 101-184 (203)
69 2w58_A DNAI, primosome compone 87.9 0.14 4.8E-06 48.9 1.1 50 81-132 21-71 (202)
70 1kft_A UVRC, excinuclease ABC 87.6 0.28 9.5E-06 40.5 2.6 28 589-616 48-75 (78)
71 3c1y_A DNA integrity scanning 86.8 0.52 1.8E-05 50.5 4.8 51 595-645 313-367 (377)
72 2fmp_A DNA polymerase beta; nu 86.8 0.29 9.9E-06 51.8 2.8 34 593-630 94-127 (335)
73 2a1j_B DNA excision repair pro 86.2 0.28 9.6E-06 41.8 1.9 34 589-623 56-89 (91)
74 1b22_A DNA repair protein RAD5 86.0 0.3 1E-05 43.8 2.0 43 588-630 49-94 (114)
75 2qgz_A Helicase loader, putati 85.6 0.22 7.6E-06 51.7 1.2 50 82-133 121-170 (308)
76 1jbk_A CLPB protein; beta barr 82.3 0.41 1.4E-05 43.9 1.3 28 105-132 33-60 (195)
77 2ztd_A Holliday junction ATP-d 82.2 0.64 2.2E-05 46.1 2.7 56 590-645 116-188 (212)
78 1jms_A Terminal deoxynucleotid 81.9 0.93 3.2E-05 48.8 4.1 31 596-630 120-150 (381)
79 2ihm_A POL MU, DNA polymerase 81.8 1.6 5.4E-05 46.6 5.8 33 595-631 100-132 (360)
80 4gfj_A Topoisomerase V; helix- 80.5 1.1 3.7E-05 48.3 3.9 50 596-646 467-520 (685)
81 2duy_A Competence protein come 79.9 0.74 2.5E-05 37.6 1.9 25 592-616 48-72 (75)
82 3vdp_A Recombination protein R 79.6 0.84 2.9E-05 45.1 2.6 55 597-653 26-80 (212)
83 2nrt_A Uvrabc system protein C 79.4 0.9 3.1E-05 45.2 2.7 47 596-643 167-217 (220)
84 2p65_A Hypothetical protein PF 79.2 0.47 1.6E-05 43.5 0.6 28 105-132 33-60 (187)
85 2bcq_A DNA polymerase lambda; 79.2 1.3 4.5E-05 46.7 4.1 32 596-631 95-126 (335)
86 3bqs_A Uncharacterized protein 77.8 0.92 3.1E-05 39.2 1.9 44 595-643 2-45 (93)
87 3t15_A Ribulose bisphosphate c 77.4 0.91 3.1E-05 46.5 2.2 36 97-132 14-53 (293)
88 1vdd_A Recombination protein R 77.0 1.1 3.8E-05 44.6 2.6 54 597-652 12-65 (228)
89 3uk6_A RUVB-like 2; hexameric 76.9 0.54 1.8E-05 49.0 0.3 46 81-132 40-87 (368)
90 2kjq_A DNAA-related protein; s 76.0 1.6 5.6E-05 40.1 3.3 42 81-133 13-54 (149)
91 1pu6_A 3-methyladenine DNA gly 75.5 1.6 5.5E-05 43.2 3.3 27 594-620 118-144 (218)
92 1kg2_A A/G-specific adenine gl 74.1 1.7 5.9E-05 43.0 3.1 26 595-620 107-132 (225)
93 3mab_A Uncharacterized protein 73.9 1.6 5.6E-05 37.6 2.5 43 595-642 2-44 (93)
94 1kea_A Possible G-T mismatches 73.6 1.9 6.3E-05 42.7 3.2 24 594-617 112-135 (221)
95 2bgw_A XPF endonuclease; hydro 73.0 2 6.9E-05 42.2 3.3 28 590-617 187-214 (219)
96 2bjv_A PSP operon transcriptio 73.0 0.96 3.3E-05 45.0 0.9 44 82-132 3-46 (265)
97 1l8q_A Chromosomal replication 73.0 0.99 3.4E-05 46.4 1.1 49 81-133 7-55 (324)
98 3sgi_A DNA ligase; HET: DNA AM 72.9 0.72 2.5E-05 52.5 0.0 46 589-634 553-599 (615)
99 4glx_A DNA ligase; inhibitor, 72.8 3.3 0.00011 46.9 5.4 57 589-645 472-564 (586)
100 3bos_A Putative DNA replicatio 72.6 0.88 3E-05 43.7 0.5 45 82-132 25-69 (242)
101 1g8p_A Magnesium-chelatase 38 72.4 0.52 1.8E-05 48.6 -1.2 43 81-132 20-62 (350)
102 3fhg_A Mjogg, N-glycosylase/DN 72.2 2 6.9E-05 42.1 3.0 23 594-616 114-136 (207)
103 1b22_A DNA repair protein RAD5 71.5 2.3 7.9E-05 38.0 3.0 51 595-646 24-79 (114)
104 3te6_A Regulatory protein SIR3 71.5 0.88 3E-05 47.7 0.3 23 110-132 40-62 (318)
105 4e9f_A Methyl-CPG-binding doma 71.4 1.5 5.2E-05 41.5 1.9 22 595-616 102-123 (161)
106 2abk_A Endonuclease III; DNA-r 71.4 2.3 7.8E-05 41.7 3.2 27 594-620 106-132 (211)
107 4glx_A DNA ligase; inhibitor, 71.2 1.4 4.6E-05 50.1 1.7 44 590-633 537-581 (586)
108 1orn_A Endonuclease III; DNA r 70.5 2.4 8.2E-05 42.1 3.2 28 594-621 110-137 (226)
109 2owo_A DNA ligase; protein-DNA 69.7 4.3 0.00015 46.8 5.4 58 588-645 471-564 (671)
110 3h4m_A Proteasome-activating n 69.2 1.1 3.8E-05 44.9 0.4 51 81-132 13-68 (285)
111 2owo_A DNA ligase; protein-DNA 68.6 1.2 4.3E-05 51.2 0.7 45 589-633 536-581 (671)
112 2kp7_A Crossover junction endo 68.4 2.7 9.3E-05 35.7 2.6 29 586-616 49-77 (87)
113 2w9m_A Polymerase X; SAXS, DNA 68.0 3.3 0.00011 46.8 4.0 59 586-644 46-116 (578)
114 2qz4_A Paraplegin; AAA+, SPG7, 67.9 1.1 3.8E-05 44.0 0.1 19 114-132 38-56 (262)
115 2h56_A DNA-3-methyladenine gly 67.8 2.8 9.6E-05 41.8 3.0 24 594-617 135-158 (233)
116 2r62_A Cell division protease 67.8 1.1 3.6E-05 44.6 -0.1 50 81-132 7-61 (268)
117 2z4s_A Chromosomal replication 67.8 1.5 5.2E-05 47.7 1.1 49 80-133 100-148 (440)
118 3fhf_A Mjogg, N-glycosylase/DN 67.3 2.9 9.9E-05 41.4 2.9 22 595-616 122-144 (214)
119 1qde_A EIF4A, translation init 67.0 1.6 5.6E-05 41.8 1.1 23 107-131 45-67 (224)
120 1vec_A ATP-dependent RNA helic 66.9 1.7 5.8E-05 41.0 1.2 24 107-132 34-57 (206)
121 3cf0_A Transitional endoplasmi 66.9 1.3 4.5E-05 45.3 0.4 50 82-132 12-66 (301)
122 3b0x_A DNA polymerase beta fam 66.5 4.1 0.00014 46.0 4.4 46 599-644 55-112 (575)
123 3tka_A Ribosomal RNA small sub 66.1 2.4 8.4E-05 44.9 2.3 43 589-631 172-220 (347)
124 2c9o_A RUVB-like 1; hexameric 66.0 1.7 5.7E-05 47.4 1.0 46 81-132 33-80 (456)
125 2edu_A Kinesin-like protein KI 66.0 3.5 0.00012 35.3 2.9 24 594-617 67-90 (98)
126 2chg_A Replication factor C sm 65.9 1.4 4.9E-05 41.2 0.4 16 117-132 40-55 (226)
127 2gxq_A Heat resistant RNA depe 65.4 1.9 6.4E-05 40.7 1.1 22 108-131 33-54 (207)
128 4b21_A Probable DNA-3-methylad 64.1 3.7 0.00013 41.0 3.0 23 595-617 148-170 (232)
129 3b9p_A CG5977-PA, isoform A; A 64.1 1.6 5.6E-05 43.9 0.5 51 81-132 17-71 (297)
130 1exn_A 5'-exonuclease, 5'-nucl 64.0 4.5 0.00015 41.8 3.8 40 600-644 206-248 (290)
131 1lv7_A FTSH; alpha/beta domain 63.9 1.5 5.3E-05 43.3 0.2 50 81-132 8-62 (257)
132 1sxj_D Activator 1 41 kDa subu 63.9 1.8 6E-05 44.5 0.7 41 83-132 35-75 (353)
133 1dgs_A DNA ligase; AMP complex 63.5 2.2 7.5E-05 49.1 1.4 44 590-633 532-576 (667)
134 3c1y_A DNA integrity scanning 63.4 3.4 0.00012 44.2 2.8 29 588-616 338-366 (377)
135 3d8b_A Fidgetin-like protein 1 63.3 1.6 5.5E-05 45.9 0.2 50 82-132 81-134 (357)
136 4etp_B Spindle POLE BODY-assoc 63.3 16 0.00054 38.2 7.6 204 79-336 91-308 (333)
137 3n5n_X A/G-specific adenine DN 62.9 3.9 0.00013 42.3 3.0 23 595-617 126-149 (287)
138 4e9f_A Methyl-CPG-binding doma 62.6 3.6 0.00012 38.9 2.5 57 588-645 63-124 (161)
139 1d2n_A N-ethylmaleimide-sensit 62.6 2.5 8.6E-05 42.1 1.5 21 112-132 61-81 (272)
140 2yg9_A DNA-3-methyladenine gly 62.6 4.1 0.00014 40.4 3.0 22 596-617 145-166 (225)
141 3dkp_A Probable ATP-dependent 61.9 2.3 8E-05 41.5 1.1 24 106-131 59-82 (245)
142 1mpg_A ALKA, 3-methyladenine D 61.9 4.2 0.00014 41.6 3.0 47 596-642 206-257 (282)
143 3s6i_A DNA-3-methyladenine gly 61.7 4.3 0.00015 40.4 3.0 22 596-617 138-159 (228)
144 3i0w_A 8-oxoguanine-DNA-glycos 61.4 3.9 0.00013 42.2 2.7 23 595-617 209-231 (290)
145 3fsp_A A/G-specific adenine gl 60.9 4.4 0.00015 43.0 3.1 28 594-621 115-142 (369)
146 3bor_A Human initiation factor 60.5 1.6 5.5E-05 42.7 -0.4 25 106-132 60-84 (237)
147 1p9r_A General secretion pathw 60.2 2.9 9.8E-05 45.4 1.5 28 106-133 158-185 (418)
148 1dgs_A DNA ligase; AMP complex 59.4 4.7 0.00016 46.4 3.2 23 623-645 536-559 (667)
149 2jhn_A ALKA, 3-methyladenine D 59.4 4.9 0.00017 41.5 3.0 22 595-616 208-229 (295)
150 1u9l_A Transcription elongatio 59.3 5.1 0.00017 32.6 2.5 46 597-646 6-60 (70)
151 2v1u_A Cell division control p 59.3 3 0.0001 43.1 1.4 27 106-132 34-61 (387)
152 1t6n_A Probable ATP-dependent 58.6 2.6 8.9E-05 40.3 0.8 24 107-132 45-68 (220)
153 2pl3_A Probable ATP-dependent 58.5 3.1 0.00011 40.3 1.3 24 107-132 56-79 (236)
154 1xwi_A SKD1 protein; VPS4B, AA 57.9 2.5 8.5E-05 43.8 0.5 50 82-132 9-62 (322)
155 3n0u_A Probable N-glycosylase/ 57.7 4.9 0.00017 39.8 2.6 23 594-616 126-149 (219)
156 1wg8_A Predicted S-adenosylmet 57.7 4.3 0.00015 41.9 2.3 43 589-631 132-180 (285)
157 4b4t_M 26S protease regulatory 57.6 2.7 9.3E-05 45.9 0.8 51 81-132 177-232 (434)
158 3jvv_A Twitching mobility prot 56.9 3.2 0.00011 44.1 1.1 29 105-133 113-141 (356)
159 1fnn_A CDC6P, cell division co 56.2 3.8 0.00013 42.5 1.6 45 82-132 14-61 (389)
160 3iuy_A Probable ATP-dependent 56.2 3.4 0.00011 39.8 1.1 24 107-132 51-74 (228)
161 3b6e_A Interferon-induced heli 56.0 1.7 5.7E-05 41.1 -1.1 23 109-133 44-66 (216)
162 1vq8_Y 50S ribosomal protein L 55.9 2.4 8.2E-05 42.7 0.0 28 589-616 40-67 (241)
163 3syl_A Protein CBBX; photosynt 55.7 3.4 0.00012 41.7 1.1 20 113-132 65-84 (309)
164 2xhi_A N-glycosylase/DNA lyase 55.2 6.2 0.00021 42.0 3.0 24 594-617 250-273 (360)
165 2qby_A CDC6 homolog 1, cell di 55.0 3.9 0.00013 42.0 1.5 45 82-132 17-62 (386)
166 3ly5_A ATP-dependent RNA helic 55.0 2.5 8.5E-05 42.2 -0.1 25 106-132 84-108 (262)
167 1wrb_A DJVLGB; RNA helicase, D 55.0 3.6 0.00012 40.4 1.1 24 107-132 54-77 (253)
168 1ixz_A ATP-dependent metallopr 54.8 3 0.0001 41.1 0.4 15 118-132 52-66 (254)
169 3co5_A Putative two-component 54.1 3.2 0.00011 37.4 0.5 18 116-133 28-45 (143)
170 3n70_A Transport activator; si 53.8 3.8 0.00013 37.0 1.0 19 114-132 23-41 (145)
171 2eyu_A Twitching motility prot 53.4 4.8 0.00016 40.6 1.7 20 114-133 24-43 (261)
172 4b4t_K 26S protease regulatory 53.2 5.8 0.0002 43.2 2.5 75 82-157 169-265 (428)
173 3eiq_A Eukaryotic initiation f 53.1 4.3 0.00015 42.3 1.4 25 106-132 70-94 (414)
174 3fmo_B ATP-dependent RNA helic 52.3 4 0.00014 41.8 1.0 27 106-132 122-148 (300)
175 2oxc_A Probable ATP-dependent 52.2 4.2 0.00014 39.4 1.1 22 108-131 56-77 (230)
176 3vfd_A Spastin; ATPase, microt 51.8 3.5 0.00012 43.6 0.5 51 81-132 111-165 (389)
177 3ber_A Probable ATP-dependent 51.7 4.4 0.00015 40.1 1.1 24 107-132 74-97 (249)
178 3llm_A ATP-dependent RNA helic 50.8 3.8 0.00013 40.0 0.5 26 105-132 68-93 (235)
179 3fe2_A Probable ATP-dependent 50.5 3.8 0.00013 40.0 0.4 24 107-132 60-83 (242)
180 1u0j_A DNA replication protein 50.1 5.1 0.00018 40.9 1.3 28 105-132 91-121 (267)
181 2qp9_X Vacuolar protein sortin 50.0 4.1 0.00014 42.8 0.6 51 81-132 47-101 (355)
182 1wcn_A Transcription elongatio 49.3 13 0.00043 30.2 3.3 28 589-616 32-59 (70)
183 2ewv_A Twitching motility prot 49.0 6 0.00021 42.0 1.7 29 104-132 125-153 (372)
184 4b4t_J 26S protease regulatory 48.4 7.7 0.00026 42.0 2.5 76 82-158 145-242 (405)
185 1ofh_A ATP-dependent HSL prote 48.3 4.3 0.00015 40.6 0.4 18 115-132 50-67 (310)
186 1gvn_B Zeta; postsegregational 48.1 9.6 0.00033 38.8 3.0 36 97-132 14-50 (287)
187 3fmp_B ATP-dependent RNA helic 48.0 5.8 0.0002 42.9 1.4 26 106-131 122-147 (479)
188 1tue_A Replication protein E1; 47.9 3.9 0.00013 40.4 0.0 18 116-133 59-76 (212)
189 2j0s_A ATP-dependent RNA helic 47.7 4.8 0.00016 42.1 0.7 24 107-132 68-91 (410)
190 3c65_A Uvrabc system protein C 47.7 3.9 0.00013 40.8 0.0 27 589-616 197-223 (226)
191 2zan_A Vacuolar protein sortin 47.6 4.2 0.00014 44.2 0.2 51 81-132 130-184 (444)
192 1iy2_A ATP-dependent metallopr 47.3 4.6 0.00016 40.5 0.4 15 118-132 76-90 (278)
193 1q0u_A Bstdead; DEAD protein, 47.3 3.2 0.00011 39.8 -0.7 22 108-131 36-57 (219)
194 1sxj_C Activator 1 40 kDa subu 47.1 4.6 0.00016 41.7 0.4 16 118-133 49-64 (340)
195 1njg_A DNA polymerase III subu 46.9 5.2 0.00018 37.6 0.7 17 116-132 46-62 (250)
196 3pfi_A Holliday junction ATP-d 46.3 4.3 0.00015 41.6 0.1 44 83-132 27-72 (338)
197 2jlq_A Serine protease subunit 46.1 9.4 0.00032 41.3 2.7 27 104-131 9-35 (451)
198 3eie_A Vacuolar protein sortin 46.0 5.3 0.00018 41.1 0.7 50 82-132 15-68 (322)
199 2chq_A Replication factor C sm 45.8 5.2 0.00018 40.1 0.6 20 113-132 36-55 (319)
200 4fcw_A Chaperone protein CLPB; 45.8 4.3 0.00015 40.9 -0.0 18 115-132 47-64 (311)
201 2qby_B CDC6 homolog 3, cell di 45.7 6.4 0.00022 40.7 1.3 46 81-132 16-62 (384)
202 1u9l_A Transcription elongatio 45.4 15 0.0005 29.8 3.1 26 591-616 33-58 (70)
203 2kp7_A Crossover junction endo 45.2 20 0.00069 30.3 4.1 39 608-646 39-79 (87)
204 1iqp_A RFCS; clamp loader, ext 45.1 5.4 0.00018 40.2 0.6 21 112-132 43-63 (327)
205 2z0m_A 337AA long hypothetical 44.7 5.7 0.0002 39.9 0.7 23 108-132 26-48 (337)
206 3pey_A ATP-dependent RNA helic 44.5 5.1 0.00017 41.3 0.3 26 107-132 36-61 (395)
207 3fht_A ATP-dependent RNA helic 44.4 5.7 0.0002 41.3 0.7 27 106-132 55-81 (412)
208 2fz4_A DNA repair protein RAD2 44.3 6.3 0.00022 38.8 0.9 23 109-133 104-126 (237)
209 1s2m_A Putative ATP-dependent 44.3 5.2 0.00018 41.6 0.3 24 107-132 52-75 (400)
210 3h1t_A Type I site-specific re 44.1 6.3 0.00022 44.0 1.0 28 105-133 189-216 (590)
211 4b4t_I 26S protease regulatory 43.7 13 0.00043 40.7 3.3 75 82-157 179-275 (437)
212 2abk_A Endonuclease III; DNA-r 43.1 21 0.00072 34.7 4.5 55 591-645 64-129 (211)
213 3pxg_A Negative regulator of g 43.0 7.2 0.00025 42.6 1.2 42 83-133 178-219 (468)
214 1kg2_A A/G-specific adenine gl 42.9 28 0.00096 34.2 5.4 57 589-645 63-129 (225)
215 2i1q_A DNA repair and recombin 42.5 18 0.00061 37.0 4.1 18 598-615 4-21 (322)
216 2i4i_A ATP-dependent RNA helic 42.2 6.6 0.00023 41.0 0.8 24 107-132 46-69 (417)
217 4b4t_H 26S protease regulatory 42.0 10 0.00036 41.7 2.3 75 82-157 206-302 (467)
218 3hu3_A Transitional endoplasmi 41.6 7.6 0.00026 42.9 1.1 19 114-132 237-255 (489)
219 2r44_A Uncharacterized protein 41.5 4.4 0.00015 41.5 -0.7 16 117-132 48-63 (331)
220 2p5t_B PEZT; postsegregational 41.0 12 0.00041 37.0 2.4 36 96-131 12-48 (253)
221 1s5l_U Photosystem II 12 kDa e 40.9 16 0.00055 33.4 3.0 28 593-620 85-112 (134)
222 3fho_A ATP-dependent RNA helic 40.8 8.3 0.00028 42.3 1.3 27 106-132 149-175 (508)
223 2oap_1 GSPE-2, type II secreti 40.6 7.2 0.00025 43.4 0.8 21 111-133 258-278 (511)
224 1in4_A RUVB, holliday junction 40.4 6.8 0.00023 40.6 0.5 16 117-132 53-68 (334)
225 4b4t_L 26S protease subunit RP 40.1 7.4 0.00025 42.5 0.7 50 82-132 178-232 (437)
226 3oiy_A Reverse gyrase helicase 39.9 8.3 0.00028 40.6 1.0 23 107-131 30-52 (414)
227 2x8a_A Nuclear valosin-contain 39.8 7.2 0.00024 39.4 0.5 15 118-132 47-61 (274)
228 1n0w_A DNA repair protein RAD5 39.1 8.6 0.00029 36.9 1.0 28 105-132 11-41 (243)
229 2ziu_A MUS81 protein; helix-ha 39.0 22 0.00074 36.6 4.0 36 590-630 230-265 (311)
230 1xti_A Probable ATP-dependent 38.8 8.5 0.00029 39.7 0.9 24 107-132 39-62 (391)
231 4gp7_A Metallophosphoesterase; 37.3 9 0.00031 35.5 0.7 18 116-133 10-27 (171)
232 3pvs_A Replication-associated 37.2 9.4 0.00032 41.6 1.0 44 83-132 24-67 (447)
233 3r8n_M 30S ribosomal protein S 37.1 26 0.0009 31.2 3.7 46 595-645 14-59 (114)
234 2a1j_A DNA repair endonuclease 36.9 11 0.00037 29.7 1.1 27 589-617 28-55 (63)
235 3i5x_A ATP-dependent RNA helic 36.6 12 0.00041 41.2 1.7 26 106-131 102-127 (563)
236 3u5c_S 40S ribosomal protein S 36.5 25 0.00085 32.7 3.6 47 593-645 26-73 (146)
237 1sxj_E Activator 1 40 kDa subu 36.3 8.9 0.00031 39.3 0.6 15 118-132 39-53 (354)
238 2db3_A ATP-dependent RNA helic 36.2 9.2 0.00032 41.0 0.7 25 106-132 86-110 (434)
239 1w5s_A Origin recognition comp 36.2 9.9 0.00034 39.6 0.9 25 108-132 40-69 (412)
240 2w0m_A SSO2452; RECA, SSPF, un 36.1 12 0.0004 35.5 1.4 18 116-133 24-41 (235)
241 1um8_A ATP-dependent CLP prote 35.3 9.7 0.00033 39.8 0.7 18 115-132 72-89 (376)
242 3arc_U Photosystem II 12 kDa e 35.3 21 0.00072 30.8 2.7 26 593-618 48-73 (97)
243 1sxj_B Activator 1 37 kDa subu 34.9 8.8 0.0003 38.5 0.3 15 118-132 45-59 (323)
244 2qag_C Septin-7; cell cycle, c 34.8 12 0.0004 40.6 1.3 24 109-132 25-48 (418)
245 3lw7_A Adenylate kinase relate 34.7 12 0.00043 33.3 1.2 16 117-132 3-18 (179)
246 3c8u_A Fructokinase; YP_612366 34.6 17 0.00059 34.5 2.3 19 114-132 21-39 (208)
247 1hqc_A RUVB; extended AAA-ATPa 34.6 9.1 0.00031 38.7 0.3 45 82-132 9-55 (324)
248 1rif_A DAR protein, DNA helica 34.3 7.1 0.00024 39.1 -0.6 23 109-133 124-146 (282)
249 2ehv_A Hypothetical protein PH 34.3 14 0.00047 35.6 1.5 17 117-133 32-48 (251)
250 1kea_A Possible G-T mismatches 34.2 48 0.0016 32.4 5.5 56 589-645 68-135 (221)
251 1ci4_A Protein (barrier-TO-aut 34.2 19 0.00065 30.7 2.2 43 597-643 18-64 (89)
252 3sgi_A DNA ligase; HET: DNA AM 34.1 8.5 0.00029 43.8 0.0 44 602-645 534-581 (615)
253 3im1_A Protein SNU246, PRE-mRN 33.9 39 0.0013 34.9 5.1 44 597-644 157-209 (328)
254 3hws_A ATP-dependent CLP prote 33.8 11 0.00036 39.4 0.7 18 115-132 51-68 (363)
255 2v1x_A ATP-dependent DNA helic 33.8 14 0.00049 41.6 1.8 25 106-132 52-76 (591)
256 3iz6_M 40S ribosomal protein S 33.6 30 0.001 32.4 3.6 48 593-645 24-71 (152)
257 3upu_A ATP-dependent DNA helic 33.5 13 0.00044 40.3 1.3 35 94-133 29-63 (459)
258 3q8k_A Flap endonuclease 1; he 33.3 20 0.00069 37.7 2.7 25 601-630 236-260 (341)
259 2zj8_A DNA helicase, putative 33.3 35 0.0012 39.0 5.0 46 596-645 645-699 (720)
260 4a2p_A RIG-I, retinoic acid in 33.2 13 0.00045 40.3 1.3 24 107-132 16-39 (556)
261 2cvh_A DNA repair and recombin 32.6 13 0.00044 35.1 1.0 28 105-132 7-37 (220)
262 2o3f_A Putative HTH-type trans 32.5 23 0.00079 30.9 2.6 40 606-645 23-63 (111)
263 4a74_A DNA repair and recombin 32.4 15 0.00051 34.8 1.4 28 105-132 12-42 (231)
264 2xzm_M RPS18E; ribosome, trans 32.4 27 0.00094 32.7 3.2 46 595-645 28-73 (155)
265 1w36_D RECD, exodeoxyribonucle 32.2 11 0.00037 42.7 0.5 18 116-133 165-182 (608)
266 3u61_B DNA polymerase accessor 32.0 12 0.0004 38.1 0.6 18 115-132 48-65 (324)
267 2qnr_A Septin-2, protein NEDD5 31.9 12 0.0004 38.4 0.6 24 109-132 12-35 (301)
268 3tr0_A Guanylate kinase, GMP k 31.9 12 0.00042 34.9 0.7 16 117-132 9-24 (205)
269 1r6b_X CLPA protein; AAA+, N-t 31.9 12 0.00043 43.1 0.9 28 106-133 198-225 (758)
270 3pxi_A Negative regulator of g 31.9 14 0.00046 42.9 1.2 29 105-133 191-219 (758)
271 3b85_A Phosphate starvation-in 31.8 13 0.00043 36.1 0.8 25 106-132 15-39 (208)
272 2dr3_A UPF0273 protein PH0284; 31.7 13 0.00045 35.6 0.9 27 106-132 11-40 (247)
273 3tbk_A RIG-I helicase domain; 31.5 14 0.00047 40.0 1.1 24 107-132 13-36 (555)
274 1z3e_B DNA-directed RNA polyme 31.4 46 0.0016 27.1 4.0 30 591-620 35-64 (73)
275 1fuu_A Yeast initiation factor 31.1 8 0.00027 39.9 -0.8 24 107-132 52-75 (394)
276 1jr3_A DNA polymerase III subu 31.0 12 0.0004 38.5 0.4 18 115-132 38-55 (373)
277 4b3f_X DNA-binding protein smu 30.9 12 0.00041 42.5 0.5 17 117-133 207-223 (646)
278 3tau_A Guanylate kinase, GMP k 30.9 13 0.00045 35.5 0.7 16 117-132 10-25 (208)
279 3j20_O 30S ribosomal protein S 30.8 35 0.0012 31.8 3.5 48 593-645 19-66 (148)
280 1ojl_A Transcriptional regulat 30.7 12 0.00041 38.3 0.4 20 113-132 23-42 (304)
281 3iwf_A Transcription regulator 30.5 26 0.00088 30.5 2.5 47 600-646 13-60 (107)
282 2fwr_A DNA repair protein RAD2 30.4 14 0.00048 39.6 1.0 22 109-132 104-125 (472)
283 1rz3_A Hypothetical protein rb 30.3 16 0.00056 34.5 1.3 19 114-132 21-39 (201)
284 1ly1_A Polynucleotide kinase; 30.3 16 0.00055 33.1 1.2 16 116-131 3-18 (181)
285 1kgd_A CASK, peripheral plasma 30.2 14 0.00046 34.4 0.7 16 117-132 7-22 (180)
286 1orn_A Endonuclease III; DNA r 30.2 55 0.0019 32.2 5.2 57 589-645 66-133 (226)
287 4gl2_A Interferon-induced heli 30.2 13 0.00044 42.1 0.6 24 107-132 16-39 (699)
288 1hv8_A Putative ATP-dependent 30.2 11 0.00037 38.2 0.0 24 108-132 38-61 (367)
289 4ag6_A VIRB4 ATPase, type IV s 29.6 11 0.00038 39.7 -0.0 20 112-133 34-53 (392)
290 2r8r_A Sensor protein; KDPD, P 29.6 13 0.00043 37.2 0.3 19 115-133 6-24 (228)
291 1ypw_A Transitional endoplasmi 29.5 19 0.00065 42.2 1.9 51 81-132 200-255 (806)
292 3sqw_A ATP-dependent RNA helic 29.4 18 0.00062 40.2 1.7 26 106-131 51-76 (579)
293 2orw_A Thymidine kinase; TMTK, 29.3 11 0.00038 35.7 -0.1 17 117-133 5-21 (184)
294 3sop_A Neuronal-specific septi 29.3 14 0.00048 37.3 0.6 19 114-132 1-19 (270)
295 1qhx_A CPT, protein (chloramph 29.0 17 0.00059 33.1 1.2 16 117-132 5-20 (178)
296 3trf_A Shikimate kinase, SK; a 28.9 17 0.0006 33.3 1.2 15 117-131 7-21 (185)
297 3a00_A Guanylate kinase, GMP k 28.9 14 0.00047 34.5 0.5 15 118-132 4-18 (186)
298 1zp6_A Hypothetical protein AT 28.8 14 0.00048 34.1 0.5 17 116-132 10-26 (191)
299 2vqe_M 30S ribosomal protein S 28.8 22 0.00077 32.2 1.8 45 596-645 16-60 (126)
300 2b8t_A Thymidine kinase; deoxy 28.7 15 0.0005 36.3 0.6 19 115-133 12-30 (223)
301 1ye8_A Protein THEP1, hypothet 28.7 14 0.00047 34.8 0.4 15 118-132 3-17 (178)
302 1e9r_A Conjugal transfer prote 28.6 13 0.00044 39.8 0.2 18 115-132 53-70 (437)
303 3e70_C DPA, signal recognition 28.1 23 0.00079 36.9 2.1 18 115-132 129-146 (328)
304 3iij_A Coilin-interacting nucl 28.1 17 0.00058 33.4 1.0 16 117-132 13-28 (180)
305 2gk6_A Regulator of nonsense t 27.6 15 0.00051 41.7 0.5 17 117-133 197-213 (624)
306 1lvg_A Guanylate kinase, GMP k 27.6 15 0.00051 34.9 0.4 16 117-132 6-21 (198)
307 1wp9_A ATP-dependent RNA helic 27.2 15 0.00051 38.4 0.4 23 108-133 19-41 (494)
308 3cf2_A TER ATPase, transitiona 26.4 30 0.001 40.7 2.8 74 82-156 201-296 (806)
309 1sxj_A Activator 1 95 kDa subu 26.4 17 0.00058 40.1 0.7 17 116-132 78-94 (516)
310 1b43_A Protein (FEN-1); nuclea 26.3 58 0.002 33.9 4.8 32 601-637 241-274 (340)
311 2bdt_A BH3686; alpha-beta prot 26.3 17 0.0006 33.6 0.7 16 117-132 4-19 (189)
312 3n5n_X A/G-specific adenine DN 26.3 77 0.0026 32.5 5.6 55 590-645 83-149 (287)
313 2j41_A Guanylate kinase; GMP, 26.2 18 0.00061 33.7 0.7 16 117-132 8-23 (207)
314 2yhs_A FTSY, cell division pro 26.2 24 0.00081 39.2 1.8 17 116-132 294-310 (503)
315 3b9q_A Chloroplast SRP recepto 26.0 18 0.00061 37.2 0.7 17 116-132 101-117 (302)
316 1yks_A Genome polyprotein [con 25.9 23 0.00077 38.2 1.6 21 110-132 5-25 (440)
317 1qvr_A CLPB protein; coiled co 25.7 12 0.00042 43.9 -0.6 29 105-133 181-209 (854)
318 2ykg_A Probable ATP-dependent 25.6 22 0.00074 40.2 1.4 22 108-131 23-44 (696)
319 3gfk_B DNA-directed RNA polyme 25.6 60 0.0021 26.9 3.8 30 591-620 42-71 (79)
320 1rj9_A FTSY, signal recognitio 25.5 19 0.00065 37.1 0.8 17 116-132 103-119 (304)
321 2va8_A SSO2462, SKI2-type heli 25.4 51 0.0017 37.5 4.5 31 595-629 655-685 (715)
322 3k4g_A DNA-directed RNA polyme 25.4 66 0.0023 27.1 4.0 28 593-620 40-67 (86)
323 3lnc_A Guanylate kinase, GMP k 25.2 21 0.00073 34.3 1.1 16 117-132 29-44 (231)
324 3fsp_A A/G-specific adenine gl 25.0 1E+02 0.0034 32.4 6.4 56 590-645 73-138 (369)
325 1znw_A Guanylate kinase, GMP k 24.9 19 0.00065 34.1 0.7 22 109-132 16-37 (207)
326 3nbx_X ATPase RAVA; AAA+ ATPas 24.9 21 0.00073 39.5 1.2 26 106-133 34-59 (500)
327 3pxi_A Negative regulator of g 24.8 22 0.00075 41.1 1.3 17 116-132 522-538 (758)
328 3lfu_A DNA helicase II; SF1 he 24.7 16 0.00055 40.9 0.1 19 115-133 22-40 (647)
329 1kag_A SKI, shikimate kinase I 24.6 22 0.00075 32.2 1.0 16 117-132 6-21 (173)
330 2dhr_A FTSH; AAA+ protein, hex 24.6 18 0.00061 40.1 0.4 16 117-132 66-81 (499)
331 1kht_A Adenylate kinase; phosp 24.3 22 0.00076 32.5 1.0 15 117-131 5-19 (192)
332 3vaa_A Shikimate kinase, SK; s 24.2 24 0.00082 33.1 1.2 16 117-132 27-42 (199)
333 1pzn_A RAD51, DNA repair and r 24.2 38 0.0013 35.4 2.9 15 599-613 37-51 (349)
334 1rxw_A Flap structure-specific 24.1 36 0.0012 35.5 2.7 25 601-630 239-263 (336)
335 1moz_A ARL1, ADP-ribosylation 24.0 25 0.00086 31.7 1.3 27 106-132 8-35 (183)
336 2qen_A Walker-type ATPase; unk 23.8 18 0.0006 36.5 0.2 17 116-132 32-48 (350)
337 3kb2_A SPBC2 prophage-derived 23.7 25 0.00085 31.5 1.2 16 117-132 3-18 (173)
338 2ofy_A Putative XRE-family tra 23.7 84 0.0029 24.9 4.4 32 609-643 17-49 (86)
339 2ze6_A Isopentenyl transferase 23.6 24 0.00083 34.9 1.2 15 117-131 3-17 (253)
340 1r6b_X CLPA protein; AAA+, N-t 23.5 26 0.00089 40.3 1.6 17 116-132 489-505 (758)
341 1xx6_A Thymidine kinase; NESG, 23.5 17 0.0006 34.8 0.1 18 117-134 10-27 (191)
342 2px0_A Flagellar biosynthesis 23.2 30 0.001 35.3 1.8 18 116-133 106-123 (296)
343 1qvr_A CLPB protein; coiled co 22.9 26 0.00089 41.2 1.4 17 116-132 589-605 (854)
344 3uie_A Adenylyl-sulfate kinase 22.8 28 0.00095 32.7 1.4 19 114-132 24-42 (200)
345 2gza_A Type IV secretion syste 22.7 19 0.00067 37.8 0.3 21 110-132 172-192 (361)
346 2i3b_A HCR-ntpase, human cance 22.5 21 0.00072 34.0 0.5 15 118-132 4-18 (189)
347 2pt7_A CAG-ALFA; ATPase, prote 22.4 20 0.00068 37.3 0.3 19 112-132 170-188 (330)
348 2v6i_A RNA helicase; membrane, 22.4 29 0.001 37.1 1.6 16 117-132 4-19 (431)
349 1ul1_X Flap endonuclease-1; pr 22.3 49 0.0017 35.1 3.3 24 602-630 237-260 (379)
350 2ce7_A Cell division protein F 22.3 21 0.00072 39.3 0.4 17 116-132 50-66 (476)
351 3t5d_A Septin-7; GTP-binding p 22.2 23 0.00077 35.3 0.6 22 111-132 4-25 (274)
352 3kta_A Chromosome segregation 22.0 22 0.00075 32.6 0.5 16 117-132 28-43 (182)
353 1z6g_A Guanylate kinase; struc 22.0 22 0.00075 34.3 0.5 15 118-132 26-40 (218)
354 2h56_A DNA-3-methyladenine gly 21.9 62 0.0021 31.9 3.8 55 591-646 90-159 (233)
355 2xzl_A ATP-dependent helicase 21.9 23 0.00078 41.6 0.6 17 117-133 377-393 (802)
356 4gfj_A Topoisomerase V; helix- 21.9 55 0.0019 35.5 3.4 25 593-618 496-520 (685)
357 2rhm_A Putative kinase; P-loop 21.6 25 0.00085 32.3 0.7 17 116-132 6-22 (193)
358 1coo_A RNA polymerase alpha su 21.6 82 0.0028 27.2 4.0 31 590-620 49-79 (98)
359 1f2t_A RAD50 ABC-ATPase; DNA d 21.6 28 0.00095 31.6 1.1 16 117-132 25-40 (149)
360 3cm0_A Adenylate kinase; ATP-b 21.6 29 0.001 31.7 1.2 15 117-131 6-20 (186)
361 2zts_A Putative uncharacterize 21.6 38 0.0013 32.3 2.1 27 105-131 17-46 (251)
362 2og2_A Putative signal recogni 21.5 24 0.00084 37.3 0.7 17 116-132 158-174 (359)
363 1y63_A LMAJ004144AAA protein; 21.5 27 0.00092 32.4 1.0 15 117-131 12-26 (184)
364 1tev_A UMP-CMP kinase; ploop, 21.4 29 0.001 31.7 1.2 16 116-131 4-19 (196)
365 2qor_A Guanylate kinase; phosp 21.2 28 0.00095 32.8 1.0 16 117-132 14-29 (204)
366 2yvu_A Probable adenylyl-sulfa 21.1 38 0.0013 31.2 1.9 18 115-132 13-30 (186)
367 1uf9_A TT1252 protein; P-loop, 21.0 34 0.0012 31.6 1.6 21 112-132 5-25 (203)
368 4a2w_A RIG-I, retinoic acid in 21.0 26 0.0009 41.7 0.9 24 107-132 257-280 (936)
369 1w4r_A Thymidine kinase; type 20.9 28 0.00096 33.8 1.0 20 111-130 16-35 (195)
370 4a2q_A RIG-I, retinoic acid in 20.9 29 0.001 40.2 1.3 25 106-132 256-280 (797)
371 1v5w_A DMC1, meiotic recombina 20.7 33 0.0011 35.6 1.6 28 105-132 109-139 (343)
372 1pu6_A 3-methyladenine DNA gly 20.6 53 0.0018 32.1 2.9 56 590-645 71-141 (218)
373 1e6c_A Shikimate kinase; phosp 20.6 29 0.00099 31.3 1.0 15 117-131 4-18 (173)
374 1z00_B DNA repair endonuclease 20.5 31 0.001 28.9 1.0 28 588-617 41-69 (84)
375 1c4o_A DNA nucleotide excision 20.5 37 0.0013 38.8 2.0 46 82-134 2-47 (664)
376 1knq_A Gluconate kinase; ALFA/ 20.5 32 0.0011 31.2 1.3 17 116-132 9-25 (175)
377 2vli_A Antibiotic resistance p 20.4 31 0.0011 31.3 1.2 15 117-131 7-21 (183)
378 3fhf_A Mjogg, N-glycosylase/DN 20.4 39 0.0013 33.2 1.9 55 591-645 73-145 (214)
379 2z83_A Helicase/nucleoside tri 20.3 33 0.0011 37.1 1.4 15 117-131 23-37 (459)
No 1
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-85 Score=711.30 Aligned_cols=331 Identities=40% Similarity=0.671 Sum_probs=253.6
Q ss_pred CCCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCC-CCCCceeeeeceeeCCCCCchhHHHH
Q 005960 22 TSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDP-DTIRSECYQLDSFFGQEDESVSKIFY 100 (667)
Q Consensus 22 ~~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~-~~~~~~~F~FD~Vf~~~~~sQ~~Vf~ 100 (667)
....++|+|+|||||++..|.... ...|+...+...+ .+ .+. .......|.||+||++++ +|++||+
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~---~~~~v~~~~~~~~------~i--~~~~~~~~~~~f~FD~Vf~~~~-tQ~~Vy~ 84 (388)
T 3bfn_A 17 QGPPARVRVAVRLRPFVDGTAGAS---DPPCVRGMDSCSL------EI--ANWRNHQETLKYQFDAFYGERS-TQQDIYA 84 (388)
T ss_dssp SSCCCCCEEEEEECCCC----------------------------------------CEEEEECSEEECTTC-CHHHHHH
T ss_pred cCCCCCEEEEEECCCCChhhhccC---CCceEEecCCCeE------EE--ecCCCCCCeeEEEcceEecCCC-CHhHHHH
Confidence 345689999999999999986543 3446655443221 11 111 112356899999999985 8899999
Q ss_pred hhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc-------CCceEEEEEEEEecceee
Q 005960 101 SEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-------TGSTAEISYYEVYMDRCY 173 (667)
Q Consensus 101 ~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~-------~~~~v~vS~~EIYnE~v~ 173 (667)
..++|+|+++++|||+||||||||||||||||+|+++++|||||++++||+.++. ..+.|++||+|||||+|+
T Consensus 85 ~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~ 164 (388)
T 3bfn_A 85 GSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVL 164 (388)
T ss_dssp HHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEE
T ss_pred HHHHHHHHHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeee
Confidence 9999999999999999999999999999999999999999999999999998753 246899999999999999
Q ss_pred eccCCCCCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCCCCce
Q 005960 174 DLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAA 253 (667)
Q Consensus 174 DLL~~~~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~ 253 (667)
|||++....+.+++++.++++|.|++++.|.+++|++++|..|.++|++++|.||..|||||+||+|+|.+.........
T Consensus 165 DLL~~~~~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~ 244 (388)
T 3bfn_A 165 DLLDPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQ 244 (388)
T ss_dssp ESSSCSSCBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCE
T ss_pred ehhccCCCCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCce
Confidence 99999888899999999999999999999999999999999999999999999999999999999999998765544456
Q ss_pred EEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcccCCCccceEEEEe
Q 005960 254 LTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACL 333 (667)
Q Consensus 254 ~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqdsLgGnskt~mIa~v 333 (667)
..|+|+|||||||||..++++.|.|++|+..||+||++||+||.+|.+++.|||||||||||||||+||||++|+|||||
T Consensus 245 ~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~i 324 (388)
T 3bfn_A 245 REGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANI 324 (388)
T ss_dssp EEEEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEE
T ss_pred eEEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--ChhhhHHHHHHHHHhhhccccccccccc
Q 005960 334 NPG--EYQESVHTVSLAARSRHISNTLPSAQKV 364 (667)
Q Consensus 334 sP~--~~~ETlsTL~fA~rar~I~N~~~~~~~~ 364 (667)
||+ +++||++||+||+||++|+|.+..|+..
T Consensus 325 SP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~ 357 (388)
T 3bfn_A 325 APERRFYLDTVSALNFAARSKEVINRPFTNESL 357 (388)
T ss_dssp CCSGGGHHHHHHHHHHHCSEEEEC---------
T ss_pred CCccccHHHHHHHHHHHHHHhhCcCcCcccCCC
Confidence 997 6899999999999999999976666544
No 2
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=4.3e-85 Score=701.34 Aligned_cols=328 Identities=35% Similarity=0.573 Sum_probs=265.0
Q ss_pred CCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCC--------CCCceeeeeceeeCCCCCchh
Q 005960 25 SSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPD--------TIRSECYQLDSFFGQEDESVS 96 (667)
Q Consensus 25 ~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~--------~~~~~~F~FD~Vf~~~~~sQ~ 96 (667)
.++|+|+|||||++.+|...+ ...++.+.+... ++.+.++. ....+.|.||+||++++ +|+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~---~~~~v~~~~~~~-------~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~ 71 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETREN---ALNIIRMDEASA-------QVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTS-CNY 71 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTT---CCBCEEEEGGGT-------EEEECC--------------EEEECSEEECTTC-CHH
T ss_pred CCCeEEEEEeCCCChhhhccC---CceEEEEcCCCC-------EEEEeeccccccccccCCCceEeeCCEEECCCc-chh
Confidence 478999999999999997654 345666544321 23333322 22357899999999985 889
Q ss_pred HHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc----CCceEEEEEEEEeccee
Q 005960 97 KIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS----TGSTAEISYYEVYMDRC 172 (667)
Q Consensus 97 ~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~----~~~~v~vS~~EIYnE~v 172 (667)
+||+..++|+|+++++|||+||||||||||||||||+|+.+++|||||++++||+.++. ..+.|.+||+|||||+|
T Consensus 72 ~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i 151 (350)
T 2vvg_A 72 GIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEI 151 (350)
T ss_dssp HHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999999999999998863 34789999999999999
Q ss_pred eeccCCCCCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCC-CC
Q 005960 173 YDLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDD-SK 251 (667)
Q Consensus 173 ~DLL~~~~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~-~~ 251 (667)
+|||++ ...+.+++++.++++|.|++++.|.+++|++++|..|..+|++++|.+|..|||||+||+|+|.+..... ..
T Consensus 152 ~DLL~~-~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 230 (350)
T 2vvg_A 152 RDLIKN-NTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKE 230 (350)
T ss_dssp EETTTT-EEEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----C
T ss_pred EEcccC-CcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCc
Confidence 999984 4579999999999999999999999999999999999999999999999999999999999998865432 33
Q ss_pred ceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcccCCCccceEEE
Q 005960 252 AALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVA 331 (667)
Q Consensus 252 ~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqdsLgGnskt~mIa 331 (667)
....|+|+|||||||||..++++.|.+++|+..||+||++||+||.+|.+++.|||||||||||||||+||||++|+||+
T Consensus 231 ~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~ 310 (350)
T 2vvg_A 231 VIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCA 310 (350)
T ss_dssp EEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEE
T ss_pred cEEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCC--ChhhhHHHHHHHHHhhhccccccccccc
Q 005960 332 CLNPG--EYQESVHTVSLAARSRHISNTLPSAQKV 364 (667)
Q Consensus 332 ~vsP~--~~~ETlsTL~fA~rar~I~N~~~~~~~~ 364 (667)
||||+ +++||++||+||+||++|+|.+..|+..
T Consensus 311 ~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~ 345 (350)
T 2vvg_A 311 NISPASTNYDETMSTLRYADRAKQIKNKPRINEDP 345 (350)
T ss_dssp EECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSC
T ss_pred EeCCccccHHHHHHHHHHHHHHhhccccceecCCc
Confidence 99997 6899999999999999999988777654
No 3
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=2.2e-84 Score=714.81 Aligned_cols=333 Identities=33% Similarity=0.547 Sum_probs=273.1
Q ss_pred CCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCC------------CCCCceeeeeceeeCC
Q 005960 23 STSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDP------------DTIRSECYQLDSFFGQ 90 (667)
Q Consensus 23 ~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~------------~~~~~~~F~FD~Vf~~ 90 (667)
...++|+|+|||||++++|...+ ..+++.+.+... .+.+..... .....+.|.||+||++
T Consensus 35 ~~~~~vrV~vRvRP~~~~E~~~~---~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~ 106 (443)
T 2owm_A 35 DPGANVRVVVRVRAFLPRELERN---AECIVEMDPATE-----RTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWS 106 (443)
T ss_dssp CCCEECEEEEEEECCCHHHHHTT---CCCCEEECSSSC-----EEEECCCC---------------CCCEEEECSEEEEE
T ss_pred CCCCCeEEEEEeCCCChHHhhcC---CceEEEEcCCCc-----cEEEecCCCcccccccccccccccCCceEecCeEeCC
Confidence 34679999999999999997654 344555543211 112211110 1123578999999986
Q ss_pred C------CCchhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc-------CC
Q 005960 91 E------DESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-------TG 157 (667)
Q Consensus 91 ~------~~sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~-------~~ 157 (667)
+ ..+|++||+.+++|+|+++++|||+||||||||||||||||+|+++++|||||++++||+.++. ..
T Consensus 107 ~~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~ 186 (443)
T 2owm_A 107 HNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNIS 186 (443)
T ss_dssp SCTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCE
T ss_pred CCcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCce
Confidence 4 3589999999999999999999999999999999999999999999999999999999998753 35
Q ss_pred ceEEEEEEEEecceeeeccCCC-----CCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCC
Q 005960 158 STAEISYYEVYMDRCYDLLEVK-----TKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSS 232 (667)
Q Consensus 158 ~~v~vS~~EIYnE~v~DLL~~~-----~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SS 232 (667)
+.|++||+|||||+|+|||++. ...+.|++++.++++|.||+++.|.+++|++++|..|..+|++++|.||..||
T Consensus 187 ~~V~vS~lEIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SS 266 (443)
T 2owm_A 187 YNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSS 266 (443)
T ss_dssp EEEEEEEEEEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCT
T ss_pred EEEEEEEEEEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccC
Confidence 7899999999999999999873 23589999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEEEEEeCC---CCCceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCC------
Q 005960 233 RSHGVLVISVSTLLGD---DSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNK------ 303 (667)
Q Consensus 233 RSH~If~I~v~~~~~~---~~~~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~------ 303 (667)
|||+||+|+|.+...+ +......|+|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++++
T Consensus 267 RSH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~ 346 (443)
T 2owm_A 267 RSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRP 346 (443)
T ss_dssp TEEEEEEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC--------
T ss_pred CCeEEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhccccccccc
Confidence 9999999999876432 2334567999999999999999999999999999999999999999999998743
Q ss_pred ----------------CCCCCCCchhhhhhhcccCCCccceEEEEeCCCChhhhHHHHHHHHHhhhcccccccccc
Q 005960 304 ----------------PRVPYRESKLTRILQDSLGGTSHALMVACLNPGEYQESVHTVSLAARSRHISNTLPSAQK 363 (667)
Q Consensus 304 ----------------~~IPYRdSkLTrLLqdsLgGnskt~mIa~vsP~~~~ETlsTL~fA~rar~I~N~~~~~~~ 363 (667)
.|||||||||||||||+||||++|+|||||+|++|+||++||+||+|||+|+|.+..|+.
T Consensus 347 ~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~~~~ETlsTLrfA~rak~I~n~~~vN~~ 422 (443)
T 2owm_A 347 SSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPTDYDETLSTLRYADQAKRIRTRAVVNQV 422 (443)
T ss_dssp -----------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSSCHHHHHHHHHHHHHHTTCEECCCCCCC
T ss_pred ccccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccccHHHHHHHHHHHHHHhhccccceeccc
Confidence 389999999999999999999999999999999999999999999999999998877763
No 4
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.6e-84 Score=694.35 Aligned_cols=326 Identities=31% Similarity=0.484 Sum_probs=280.9
Q ss_pred CCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCchhHHHHhhc
Q 005960 24 TSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYSEV 103 (667)
Q Consensus 24 ~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~~~v 103 (667)
+.++|+|+|||||++..|...+.. .++.+.... . .+...+ ..+.|.||+||++++ +|++||+.++
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~---~~v~~~~~~------~-~i~~~~----~~~~F~FD~Vf~~~~-tQ~~Vy~~~~ 66 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGET---AQVYWKTDN------N-VIYQVD----GSKSFNFDRVFHGNE-TTKNVYEEIA 66 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTC---CCCCEEEET------T-EEEETT----SSCEEECSCEECTTS-CHHHHHHHTT
T ss_pred CCCCEEEEEECCCCChhhhccCCC---cEEEEeCCC------C-eEEECC----CCeEEECCEEECCCC-CHHHHHHHHH
Confidence 468999999999999998654422 222221111 1 222221 235799999999986 8899999999
Q ss_pred cchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc---CCceEEEEEEEEecceeeeccCCCC
Q 005960 104 NPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS---TGSTAEISYYEVYMDRCYDLLEVKT 180 (667)
Q Consensus 104 ~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~---~~~~v~vS~~EIYnE~v~DLL~~~~ 180 (667)
+|+|+++++|||+||||||||||||||||+|+++++|||||++++||+.++. ..+.|++||+|||||+|+|||.+..
T Consensus 67 ~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 146 (349)
T 1t5c_A 67 APIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQ 146 (349)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSC
T ss_pred HHHHHHHHcCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCC
Confidence 9999999999999999999999999999999999999999999999998865 3578999999999999999998653
Q ss_pred --CceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCC----CCceE
Q 005960 181 --KEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDD----SKAAL 254 (667)
Q Consensus 181 --~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~----~~~~~ 254 (667)
..+.+++++.++++|.|++++.|.+++|++++|..|.++|++++|.||..|||||+||+|+|.+..... .+...
T Consensus 147 ~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~ 226 (349)
T 1t5c_A 147 KMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVK 226 (349)
T ss_dssp TTCCEEEEETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEE
T ss_pred CCCCceEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEE
Confidence 579999999999999999999999999999999999999999999999999999999999998875432 23456
Q ss_pred EEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCC--CCCCCCCchhhhhhhcccCCCccceEEEE
Q 005960 255 TGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNK--PRVPYRESKLTRILQDSLGGTSHALMVAC 332 (667)
Q Consensus 255 ~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~--~~IPYRdSkLTrLLqdsLgGnskt~mIa~ 332 (667)
.|+|+|||||||||..++++.|.|++|+..||+||++||+||.+|++++ .|||||||||||||||+||||++|+||||
T Consensus 227 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~ 306 (349)
T 1t5c_A 227 VSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICT 306 (349)
T ss_dssp EEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEE
T ss_pred EEEEEEEECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEE
Confidence 7999999999999999999999999999999999999999999998865 69999999999999999999999999999
Q ss_pred eCCCChhhhHHHHHHHHHhhhccccccccccc
Q 005960 333 LNPGEYQESVHTVSLAARSRHISNTLPSAQKV 364 (667)
Q Consensus 333 vsP~~~~ETlsTL~fA~rar~I~N~~~~~~~~ 364 (667)
|+|.+++||++||+||+|||+|+|.+..|+..
T Consensus 307 isP~~~~ETlsTL~fA~rak~I~n~~~vn~~~ 338 (349)
T 1t5c_A 307 ITPVSFDETLTALQFASTAKYMKNTPYVNEVS 338 (349)
T ss_dssp ECTTCSHHHHHHHHHHHHHTTCCCCCCCCEEC
T ss_pred eCCCCHHHHHHHHHHHHHHhhcccCceeccCC
Confidence 99999999999999999999999987777654
No 5
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=2.1e-84 Score=700.23 Aligned_cols=335 Identities=36% Similarity=0.544 Sum_probs=277.7
Q ss_pred CCCCCCCCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCC---CCceeeeeceeeCCCCC
Q 005960 17 TIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDT---IRSECYQLDSFFGQEDE 93 (667)
Q Consensus 17 ~~~~~~~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~---~~~~~F~FD~Vf~~~~~ 93 (667)
..+......++|+|+|||||++..|...+ ...++.+..... ++.+.++.. ...+.|.||+||++++
T Consensus 12 ~~~~~~~~~~~irV~vRvRP~~~~E~~~~---~~~~v~~~~~~~-------~v~v~~~~~~~~~~~~~F~FD~Vf~~~~- 80 (372)
T 3b6u_A 12 ENLYFQGSSESVRVVVRCRPMNGKEKAAS---YDKVVDVDVKLG-------QVSVKNPKGTAHEMPKTFTFDAVYDWNA- 80 (372)
T ss_dssp ---------CBCEEEEEECCCCHHHHHTT---CCBCEEEETTTT-------EEEECCTTCTTTCCCEEEECSEEECTTC-
T ss_pred ccCccCCCCCCeEEEEEcCCCChhhhccC---CceEEEEeCCCC-------EEEEECCCCCCCCCceEEEcCeEeCCcC-
Confidence 34455567799999999999999997654 344565543321 334444432 3457899999999985
Q ss_pred chhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCC---CCCCChHHHHHHHHhhhcc---CCceEEEEEEEE
Q 005960 94 SVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSE---ERPGLMPLAMSKILSICQS---TGSTAEISYYEV 167 (667)
Q Consensus 94 sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~---~~~GLipral~~LF~~~~~---~~~~v~vS~~EI 167 (667)
+|++||+.+++|+|+++++|||+||||||||||||||||+|.. +++|||||++++||+.++. ..+.|++||+||
T Consensus 81 ~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EI 160 (372)
T 3b6u_A 81 KQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEI 160 (372)
T ss_dssp CHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEE
T ss_pred chHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEE
Confidence 8899999999999999999999999999999999999999975 4569999999999998864 457899999999
Q ss_pred ecceeeeccCCCC-CceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEe
Q 005960 168 YMDRCYDLLEVKT-KEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLL 246 (667)
Q Consensus 168 YnE~v~DLL~~~~-~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~ 246 (667)
|||+|+|||++.. ..+.+++++.++++|.|++++.|.+++|++++|..|..+|++++|.||..|||||+||+|+|.+..
T Consensus 161 YnE~i~DLL~~~~~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~ 240 (372)
T 3b6u_A 161 YQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSE 240 (372)
T ss_dssp ETTEEEETTSSCTTCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC
T ss_pred eCCEEEECCCCCCCCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEee
Confidence 9999999998763 578999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C--CCCCceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCC-CCCCCCCchhhhhhhcccCC
Q 005960 247 G--DDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNK-PRVPYRESKLTRILQDSLGG 323 (667)
Q Consensus 247 ~--~~~~~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~-~~IPYRdSkLTrLLqdsLgG 323 (667)
. ++......|+|+|||||||||..++++.|.|++|+..||+||++||+||.+|.+++ .|||||||||||||||+|||
T Consensus 241 ~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgG 320 (372)
T 3b6u_A 241 VGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGG 320 (372)
T ss_dssp -----CCCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTS
T ss_pred cCCCCCcceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCC
Confidence 3 23345667999999999999999999999999999999999999999999998865 69999999999999999999
Q ss_pred CccceEEEEeCCC--ChhhhHHHHHHHHHhhhccccccccc
Q 005960 324 TSHALMVACLNPG--EYQESVHTVSLAARSRHISNTLPSAQ 362 (667)
Q Consensus 324 nskt~mIa~vsP~--~~~ETlsTL~fA~rar~I~N~~~~~~ 362 (667)
|++|+||+||||+ +++||++||+||+||++|+|.+..|+
T Consensus 321 nskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~ 361 (372)
T 3b6u_A 321 NAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNE 361 (372)
T ss_dssp SSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC
T ss_pred CccEEEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecC
Confidence 9999999999997 68999999999999999999665554
No 6
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=1.4e-83 Score=691.16 Aligned_cols=329 Identities=34% Similarity=0.542 Sum_probs=294.5
Q ss_pred CCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCchhHHHHhh
Q 005960 23 STSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYSE 102 (667)
Q Consensus 23 ~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~~~ 102 (667)
+..++|+|+|||||++..|...+ ...+|.+.+... +.+... .....|.||+||++++ +|++||+..
T Consensus 3 ~~~~~i~V~vRvRP~~~~E~~~~---~~~~v~~~~~~~--------~~~~~~--~~~~~f~FD~Vf~~~~-~Q~~Vy~~~ 68 (355)
T 1goj_A 3 SSANSIKVVARFRPQNRVEIESG---GQPIVTFQGPDT--------CTVDSK--EAQGSFTFDRVFDMSC-KQSDIFDFS 68 (355)
T ss_dssp CSSCBCEEEEEECCCCHHHHTTT---CCBCEEECSTTE--------EEECST--TCCEEEECSEEECTTC-CHHHHHHHH
T ss_pred CCCCCeEEEEECCCCChHHhhcC---CceEEEEcCCCe--------EEEccC--CCccEEeeCeEECCCC-ccHHHHHHH
Confidence 34689999999999999997554 345676655422 222221 2356899999999985 889999999
Q ss_pred ccchhhhhcCCCCEEEEeeccCCCCCcceeccC----CCCCCChHHHHHHHHhhhcc----CCceEEEEEEEEecceeee
Q 005960 103 VNPLIPGIFHGRNATVFAYGATGSGKTYTMQGS----EERPGLMPLAMSKILSICQS----TGSTAEISYYEVYMDRCYD 174 (667)
Q Consensus 103 v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~----~~~~GLipral~~LF~~~~~----~~~~v~vS~~EIYnE~v~D 174 (667)
++|+|+++++|||+||||||||||||||||+|+ ++++|||||++++||+.+.. ..+.|++||+|||||+|+|
T Consensus 69 ~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~D 148 (355)
T 1goj_A 69 IKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRD 148 (355)
T ss_dssp THHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEE
Confidence 999999999999999999999999999999996 35689999999999998754 3578999999999999999
Q ss_pred ccCCCCCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCCCCceE
Q 005960 175 LLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAAL 254 (667)
Q Consensus 175 LL~~~~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~ 254 (667)
||++....+.+++++.++++|.|++++.|.+++|++++|..|..+|++++|.+|..|||||+||+|+|.+...+. +...
T Consensus 149 LL~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~ 227 (355)
T 1goj_A 149 LLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVET-GSAK 227 (355)
T ss_dssp TTSTTCCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTT-TEEE
T ss_pred cccCccCCceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCC-Ccee
Confidence 999988889999999999999999999999999999999999999999999999999999999999999876533 4456
Q ss_pred EEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccC-CCCCCCCCchhhhhhhcccCCCccceEEEEe
Q 005960 255 TGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNN-KPRVPYRESKLTRILQDSLGGTSHALMVACL 333 (667)
Q Consensus 255 ~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~-~~~IPYRdSkLTrLLqdsLgGnskt~mIa~v 333 (667)
.|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|.++ ..|||||||||||||||+||||++|+||+||
T Consensus 228 ~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~i 307 (355)
T 1goj_A 228 SGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINC 307 (355)
T ss_dssp EEEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEE
T ss_pred eeEEEEEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEE
Confidence 899999999999999999999999999999999999999999999986 4799999999999999999999999999999
Q ss_pred CCC--ChhhhHHHHHHHHHhhhcccccccccccCC
Q 005960 334 NPG--EYQESVHTVSLAARSRHISNTLPSAQKVQT 366 (667)
Q Consensus 334 sP~--~~~ETlsTL~fA~rar~I~N~~~~~~~~~~ 366 (667)
||+ +++||++||+||+|||+|+|.+..|+....
T Consensus 308 sP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~ 342 (355)
T 1goj_A 308 SPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSP 342 (355)
T ss_dssp CCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSC
T ss_pred CcccccHHHHHHHHHHHHHHhhccCCceeCCCCCH
Confidence 997 689999999999999999998888766543
No 7
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=4.6e-84 Score=696.90 Aligned_cols=330 Identities=34% Similarity=0.552 Sum_probs=276.0
Q ss_pred CCCCCCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCchhHH
Q 005960 19 PNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKI 98 (667)
Q Consensus 19 ~~~~~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~sQ~~V 98 (667)
++..+..++|+|+|||||+++.|...+ ...++.+.+.. ...++.+. .+.|.||+||++++ +|++|
T Consensus 4 ~~~~~~~~~i~V~vRvRP~~~~E~~~~---~~~~v~~~~~~-----~~~~i~~~------~~~f~FD~Vf~~~~-~Q~~V 68 (365)
T 2y65_A 4 EREIPAEDSIKVVCRFRPLNDSEEKAG---SKFVVKFPNNV-----EENCISIA------GKVYLFDKVFKPNA-SQEKV 68 (365)
T ss_dssp ----CCEEECEEEEEECCCCHHHHHTT---CCBCEECCSSS-----TTCEEEET------TEEEECSEEECTTC-CHHHH
T ss_pred cccCCCCCCeEEEEEcCcCChhHhccC---CceEEEeCCCC-----CCcEEEEC------CEEEeCceEecCCC-CHHHH
Confidence 345567789999999999999997654 33445443321 12233332 35799999999985 88999
Q ss_pred HHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCC---CCCChHHHHHHHHhhhcc----CCceEEEEEEEEecce
Q 005960 99 FYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEE---RPGLMPLAMSKILSICQS----TGSTAEISYYEVYMDR 171 (667)
Q Consensus 99 f~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~---~~GLipral~~LF~~~~~----~~~~v~vS~~EIYnE~ 171 (667)
|+.+++|+|+++++|||+||||||||||||||||+|... .+|||||++++||+.++. ..+.|++||+|||||+
T Consensus 69 y~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~ 148 (365)
T 2y65_A 69 YNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDK 148 (365)
T ss_dssp HHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTE
T ss_pred HHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCe
Confidence 999999999999999999999999999999999999753 569999999999998753 3578999999999999
Q ss_pred eeeccCCCCCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCCCC
Q 005960 172 CYDLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSK 251 (667)
Q Consensus 172 v~DLL~~~~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~ 251 (667)
|+|||++....+.+++++.++++|.|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|+|.+..... .
T Consensus 149 i~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~ 227 (365)
T 2y65_A 149 IRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLEN-Q 227 (365)
T ss_dssp EEETTCTTCCSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTT-C
T ss_pred eeecccCCcCCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCC-C
Confidence 999999888889999999999999999999999999999999999999999999999999999999999998876543 3
Q ss_pred ceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccC-CCCCCCCCchhhhhhhcccCCCccceEE
Q 005960 252 AALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNN-KPRVPYRESKLTRILQDSLGGTSHALMV 330 (667)
Q Consensus 252 ~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~-~~~IPYRdSkLTrLLqdsLgGnskt~mI 330 (667)
....|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+++ +.|||||||||||||||+||||++|+||
T Consensus 228 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI 307 (365)
T 2y65_A 228 KKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIV 307 (365)
T ss_dssp CEEEEEEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEE
T ss_pred CEeEEEEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEE
Confidence 456899999999999999999999999999999999999999999999886 5799999999999999999999999999
Q ss_pred EEeCCC--ChhhhHHHHHHHHHhhhccccccccccc
Q 005960 331 ACLNPG--EYQESVHTVSLAARSRHISNTLPSAQKV 364 (667)
Q Consensus 331 a~vsP~--~~~ETlsTL~fA~rar~I~N~~~~~~~~ 364 (667)
+||||+ +++||++||+||+||++|+|.+..|+..
T Consensus 308 ~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~ 343 (365)
T 2y65_A 308 ICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEEL 343 (365)
T ss_dssp EEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEEC
T ss_pred EEecCccCCHHHHHHHHHHHHHHhcccCcceeCCCC
Confidence 999997 6899999999999999999988777654
No 8
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=3.3e-83 Score=690.73 Aligned_cols=326 Identities=32% Similarity=0.501 Sum_probs=288.8
Q ss_pred CCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCchhHHHHhhc
Q 005960 24 TSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYSEV 103 (667)
Q Consensus 24 ~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~~~v 103 (667)
.+++|+|+|||||++..|...+. ++.+... +..++..... ....+.|.||+||++++ +|++||+. +
T Consensus 3 ~~~~i~V~vRvRP~~~~E~~~~~-----~~~~~~~------~~~~v~~~~~-~~~~~~f~FD~Vf~~~~-~Q~~Vy~~-~ 68 (369)
T 3cob_A 3 MKGKIRVYCRLRPLCEKEIIAKE-----RNAIRSV------DEFTVEHLWK-DDKAKQHMYDRVFDGNA-TQDDVFED-T 68 (369)
T ss_dssp -CCBCEEEEEECCCCHHHHHTTC-----CBCEEEC------SSSEEEEECT-TSCEEEEECSEEECTTC-CHHHHHHT-T
T ss_pred CCCCeEEEEECCCCChhhccCCC-----cEEEEcC------CcEEEEecCC-CCCceEEecCEEECCCC-Ccceehhh-h
Confidence 46899999999999999976442 1222221 1223332221 12347899999999985 88999998 7
Q ss_pred cchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc----CCceEEEEEEEEecceeeeccCCC
Q 005960 104 NPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS----TGSTAEISYYEVYMDRCYDLLEVK 179 (667)
Q Consensus 104 ~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~----~~~~v~vS~~EIYnE~v~DLL~~~ 179 (667)
.|+|+++++|||+||||||||||||||||+|+++++|||||++++||+.++. ..+.|++||+|||||+|+|||.+.
T Consensus 69 ~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 148 (369)
T 3cob_A 69 KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPK 148 (369)
T ss_dssp THHHHHHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCS
T ss_pred hhhhHhhhcCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCc
Confidence 9999999999999999999999999999999999999999999999998764 357899999999999999999875
Q ss_pred C---CceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCCCCceEEE
Q 005960 180 T---KEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTG 256 (667)
Q Consensus 180 ~---~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~s 256 (667)
. ..+.+++++.++++|.|++++.|.+++|++.+|..|..+|++++|.||..|||||+||+|+|.+.... ......|
T Consensus 149 ~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~~~s 227 (369)
T 3cob_A 149 QAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ-TQAIARG 227 (369)
T ss_dssp SSCCCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETT-TCCEEEE
T ss_pred ccCCcceEEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCC-CCcEEEE
Confidence 3 47899999999999999999999999999999999999999999999999999999999999987653 3455789
Q ss_pred EEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcccCCCccceEEEEeCCC
Q 005960 257 KLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG 336 (667)
Q Consensus 257 kL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqdsLgGnskt~mIa~vsP~ 336 (667)
+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++++.|||||||||||||||+||||++|+|||||||+
T Consensus 228 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~ 307 (369)
T 3cob_A 228 KLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPA 307 (369)
T ss_dssp EEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCB
T ss_pred EEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred --ChhhhHHHHHHHHHhhhccccccccccc
Q 005960 337 --EYQESVHTVSLAARSRHISNTLPSAQKV 364 (667)
Q Consensus 337 --~~~ETlsTL~fA~rar~I~N~~~~~~~~ 364 (667)
+++||++||+||+||++|+|.+..|...
T Consensus 308 ~~~~~ETl~TLrfA~rak~i~~~~~~n~~~ 337 (369)
T 3cob_A 308 ESNLDETHNSLTYASRVRSIVNDPSKNVSS 337 (369)
T ss_dssp GGGHHHHHHHHHHHHHHHTCBCCCCCCEEC
T ss_pred cccHHHHHHHHHHHHHHhhcccCCcccCCH
Confidence 6899999999999999999987766543
No 9
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1.1e-83 Score=693.39 Aligned_cols=332 Identities=34% Similarity=0.557 Sum_probs=269.9
Q ss_pred CCCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecC-CCCCCceeeeeceeeCCCCCchhHHHH
Q 005960 22 TSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD-PDTIRSECYQLDSFFGQEDESVSKIFY 100 (667)
Q Consensus 22 ~~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~-~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~ 100 (667)
....++|+|+|||||++..|.... ...++.+.+.. ..+.+.... ......+.|.||+||++++ +|++||+
T Consensus 4 ~~~~~~i~V~vRvRP~~~~E~~~~---~~~~v~~~~~~-----~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~~Vy~ 74 (359)
T 1x88_A 4 EEKGKNIQVVVRCRPFNLAERKAS---AHSIVECDPVR-----KEVSVRTGGLADKSSRKTYTFDMVFGAST-KQIDVYR 74 (359)
T ss_dssp -----CCEEEEEECCCCHHHHHTT---CCCCEEEETTT-----TEEEEEEEEETTEEEEEEEECSEEECTTC-CHHHHHH
T ss_pred CCCCCCeEEEEEeCCCChhhhhcC---CceEEEEcCCC-----cEEEEeCCCccCCcCceEEeceEEEeccC-chhHHHH
Confidence 445789999999999999997654 34455554332 123332211 1122356899999999985 8899999
Q ss_pred hhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCC-----------CCCChHHHHHHHHhhhccC--CceEEEEEEEE
Q 005960 101 SEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEE-----------RPGLMPLAMSKILSICQST--GSTAEISYYEV 167 (667)
Q Consensus 101 ~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~-----------~~GLipral~~LF~~~~~~--~~~v~vS~~EI 167 (667)
.+++|+|+++++|||+||||||||||||||||+|... .+|||||++++||+.++.. .+.|++||+||
T Consensus 75 ~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EI 154 (359)
T 1x88_A 75 SVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEI 154 (359)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEE
T ss_pred HHHHHhHHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhccCceEEEEEEEEEE
Confidence 9999999999999999999999999999999999753 3699999999999988653 47899999999
Q ss_pred ecceeeeccCCCC---CceeeeeCCC--CCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEE
Q 005960 168 YMDRCYDLLEVKT---KEISILDDKD--GQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISV 242 (667)
Q Consensus 168 YnE~v~DLL~~~~---~~l~i~ed~~--g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v 242 (667)
|||+|+|||++.. ..+.+++++. ++++|.|++++.|.+++|++++|..|..+|++++|.||..|||||+||+|+|
T Consensus 155 YnE~i~DLL~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i 234 (359)
T 1x88_A 155 YNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTI 234 (359)
T ss_dssp ETTEEEETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEE
T ss_pred eCceeeehhcccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEE
Confidence 9999999998764 4588998874 7899999999999999999999999999999999999999999999999999
Q ss_pred EEEeC--CCCCceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcc
Q 005960 243 STLLG--DDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDS 320 (667)
Q Consensus 243 ~~~~~--~~~~~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqds 320 (667)
.+... ++......|+|+|||||||||..++++.|.|++|+..||+||++||+||.+|.++..|||||||||||||||+
T Consensus 235 ~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqds 314 (359)
T 1x88_A 235 HMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDS 314 (359)
T ss_dssp EEEEECTTSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGG
T ss_pred EEecccCCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHH
Confidence 87543 2333446799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccceEEEEeCCC--ChhhhHHHHHHHHHhhhccccccccc
Q 005960 321 LGGTSHALMVACLNPG--EYQESVHTVSLAARSRHISNTLPSAQ 362 (667)
Q Consensus 321 LgGnskt~mIa~vsP~--~~~ETlsTL~fA~rar~I~N~~~~~~ 362 (667)
||||++|+|||||||+ +++||++||+||+|||+|+|.+..|+
T Consensus 315 LgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 315 LGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp SSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred hCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 9999999999999998 68999999999999999999776664
No 10
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=9.6e-84 Score=685.34 Aligned_cols=315 Identities=35% Similarity=0.541 Sum_probs=284.2
Q ss_pred CCCCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCchhHHHH
Q 005960 21 STSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFY 100 (667)
Q Consensus 21 ~~~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~ 100 (667)
.....++|+|+|||||+++.|...+ ...++.+.+.. ++.+. .+.|.||+||++++ +|++||+
T Consensus 2 ~~~~~~~i~V~vRvRP~~~~E~~~~---~~~~~~~~~~~--------~~~~~------~~~f~FD~Vf~~~~-sQ~~Vy~ 63 (325)
T 1bg2_A 2 ADLAECNIKVMCRFRPLNESEVNRG---DKYIAKFQGED--------TVVIA------SKPYAFDRVFQSST-SQEQVYN 63 (325)
T ss_dssp -CCSSCEEEEEEEECCCCHHHHHHT---CCBCCEEETTT--------EEEET------TEEEECSEEECTTC-CHHHHHH
T ss_pred CCCCCCCEEEEEEcCCCChhHhccC---CeeEEEECCCC--------eEEEC------CEEEECCeEeCCCC-CHHHHHH
Confidence 3456789999999999999997654 23344444322 22222 35799999999985 8899999
Q ss_pred hhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCC---CCChHHHHHHHHhhhcc----CCceEEEEEEEEecceee
Q 005960 101 SEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEER---PGLMPLAMSKILSICQS----TGSTAEISYYEVYMDRCY 173 (667)
Q Consensus 101 ~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~---~GLipral~~LF~~~~~----~~~~v~vS~~EIYnE~v~ 173 (667)
.+++|+|+++++|||+||||||||||||||||+|...+ +|||||++++||+.+.. ..+.|++||+|||||+|+
T Consensus 64 ~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~ 143 (325)
T 1bg2_A 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIR 143 (325)
T ss_dssp HHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEE
T ss_pred HHhhhhHHHHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeee
Confidence 99999999999999999999999999999999997544 59999999999998743 457899999999999999
Q ss_pred eccCCCCCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCCCCce
Q 005960 174 DLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAA 253 (667)
Q Consensus 174 DLL~~~~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~ 253 (667)
|||++....+.+++++.++++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+..... ...
T Consensus 144 DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~ 222 (325)
T 1bg2_A 144 DLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT-EQK 222 (325)
T ss_dssp ESSCTTCCSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT-CCE
T ss_pred ecccCCCCCceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCC-CcE
Confidence 9999888889999999999999999999999999999999999999999999999999999999999999876543 345
Q ss_pred EEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcccCCCccceEEEEe
Q 005960 254 LTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACL 333 (667)
Q Consensus 254 ~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqdsLgGnskt~mIa~v 333 (667)
..|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|++++.|||||||||||||||+||||++|+||+||
T Consensus 223 ~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~v 302 (325)
T 1bg2_A 223 LSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICC 302 (325)
T ss_dssp EEEEEEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEE
T ss_pred EEEEEEEEECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--ChhhhHHHHHHHHHhhhc
Q 005960 334 NPG--EYQESVHTVSLAARSRHI 354 (667)
Q Consensus 334 sP~--~~~ETlsTL~fA~rar~I 354 (667)
||+ +++||++||+||+|||+|
T Consensus 303 sP~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 303 SPSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp CCBGGGHHHHHHHHHHHHTSCCC
T ss_pred CCccccHHHHHHHHHHHHHhccC
Confidence 997 689999999999999986
No 11
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=1.3e-83 Score=695.63 Aligned_cols=334 Identities=39% Similarity=0.614 Sum_probs=273.2
Q ss_pred CCCCCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCchhHHH
Q 005960 20 NSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIF 99 (667)
Q Consensus 20 ~~~~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~sQ~~Vf 99 (667)
......++|+|+|||||++..|...+ ...++.+.+... +.+. ........+.|.||+||++++ +|++||
T Consensus 17 ~~~~~~~~i~V~vRvRP~~~~E~~~~---~~~~v~~~~~~~------~~~~-~~~~~~~~~~F~FD~vf~~~~-~Q~~Vy 85 (373)
T 2wbe_C 17 PQKKSNQNIQVYVRVRPLNSRERCIR---SAEVVDVVGPRE------VVTR-HTLDSKLTKKFTFDRSFGPES-KQCDVY 85 (373)
T ss_dssp -CCCCCEECEEEEEECCCCHHHHHHT---CCBCEEEETTTE------EEES-SSSSSTTCEEEECSEEECTTC-CHHHHH
T ss_pred CCcCCCCCeEEEEEcCCCChhhhccC---CCceEEEcCCCe------EEEe-cCCCCCCceEEeccEEecccc-chhHHH
Confidence 34456789999999999999997654 344666654422 2221 112223457899999999985 889999
Q ss_pred HhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCC-----------CCCChHHHHHHHHhhhcc--CCceEEEEEEE
Q 005960 100 YSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEE-----------RPGLMPLAMSKILSICQS--TGSTAEISYYE 166 (667)
Q Consensus 100 ~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~-----------~~GLipral~~LF~~~~~--~~~~v~vS~~E 166 (667)
+.+++|+|+++++|||+||||||||||||||||+|... ++|||||++++||+.++. ..+.|++||+|
T Consensus 86 ~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~E 165 (373)
T 2wbe_C 86 SVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLE 165 (373)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhcCceEEEEEEEEE
Confidence 99999999999999999999999999999999999754 679999999999998753 56899999999
Q ss_pred EecceeeeccCCCC-CceeeeeC--CCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEE
Q 005960 167 VYMDRCYDLLEVKT-KEISILDD--KDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVS 243 (667)
Q Consensus 167 IYnE~v~DLL~~~~-~~l~i~ed--~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~ 243 (667)
||||+|+|||++.. ..+.++++ ..|+++|.|++++.|.+++|++++|..|..+|++++|.||..|||||+||+|+|.
T Consensus 166 IYnE~i~DLL~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~ 245 (373)
T 2wbe_C 166 LYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVH 245 (373)
T ss_dssp EETTEEEESSCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEE
T ss_pred EeCCeEEECCCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEE
Confidence 99999999998754 45778887 4678999999999999999999999999999999999999999999999999998
Q ss_pred EEeCC--CCCceEEEEEEEEECCCCCCccccccc-cchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcc
Q 005960 244 TLLGD--DSKAALTGKLNLIDLAGNEDNRRTCNE-GIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDS 320 (667)
Q Consensus 244 ~~~~~--~~~~~~~skL~fVDLAGSEr~~~t~~~-g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqds 320 (667)
+.... +......|+|+|||||||||..++++. |.|++|+..||+||++||+||.+|.++..|||||||||||||||+
T Consensus 246 ~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqds 325 (373)
T 2wbe_C 246 IRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQES 325 (373)
T ss_dssp ECTTCTTTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHH
T ss_pred EecCCCCCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHH
Confidence 75432 233446799999999999999999887 999999999999999999999999999999999999999999999
Q ss_pred cCCCccceEEEEeCCC--ChhhhHHHHHHHHHhhhccccccccccc
Q 005960 321 LGGTSHALMVACLNPG--EYQESVHTVSLAARSRHISNTLPSAQKV 364 (667)
Q Consensus 321 LgGnskt~mIa~vsP~--~~~ETlsTL~fA~rar~I~N~~~~~~~~ 364 (667)
||||++|+|||||||+ +++||++||+||+|||+|+|.+..|+..
T Consensus 326 LgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~ 371 (373)
T 2wbe_C 326 LGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKL 371 (373)
T ss_dssp HHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEEC
T ss_pred hCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceecccc
Confidence 9999999999999997 6899999999999999999988777653
No 12
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=4e-83 Score=690.52 Aligned_cols=326 Identities=33% Similarity=0.546 Sum_probs=270.6
Q ss_pred CCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCC-------CchhH
Q 005960 25 SSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQED-------ESVSK 97 (667)
Q Consensus 25 ~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~-------~sQ~~ 97 (667)
.++|+|+|||||++.+|...+ ..+++.+.+. ...+..........+.|.||+||++.. .+|++
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~---~~~~v~~~~~-------~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~ 72 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRD---SKCIIQMSGS-------TTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQ 72 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTT---CCBCEEEETT-------EEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHH
T ss_pred CCCcEEEEECCCCChhhccCC---CCeEEEECCC-------cEEEeccCCCCCCceEEecceEeecCccccccccCcHHH
Confidence 368999999999999997654 3445555432 122221111223457899999998761 48899
Q ss_pred HHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCC--CCCCChHHHHHHHHhhhccC-----CceEEEEEEEEecc
Q 005960 98 IFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSE--ERPGLMPLAMSKILSICQST-----GSTAEISYYEVYMD 170 (667)
Q Consensus 98 Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~--~~~GLipral~~LF~~~~~~-----~~~v~vS~~EIYnE 170 (667)
||+.+++|+|+++++|||+||||||||||||||||+|.. +++|||||++++||+.++.. .+.|++||+|||||
T Consensus 73 Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE 152 (366)
T 2zfi_A 73 VYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCE 152 (366)
T ss_dssp HHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCC
Confidence 999999999999999999999999999999999999984 57899999999999988642 47899999999999
Q ss_pred eeeeccCCCC-CceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCC
Q 005960 171 RCYDLLEVKT-KEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDD 249 (667)
Q Consensus 171 ~v~DLL~~~~-~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~ 249 (667)
+|+|||++.. ..+.+++++.++++|.||+++.|.+++|++++|..|.++|++++|.||..|||||+||+|+|.+...+.
T Consensus 153 ~v~DLL~~~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~ 232 (366)
T 2zfi_A 153 RVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDA 232 (366)
T ss_dssp EEEETTCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECT
T ss_pred eEEEccccccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccC
Confidence 9999999864 479999999999999999999999999999999999999999999999999999999999998865433
Q ss_pred C---CceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhcc------------CCCCCCCCCchhh
Q 005960 250 S---KAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNN------------NKPRVPYRESKLT 314 (667)
Q Consensus 250 ~---~~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~------------~~~~IPYRdSkLT 314 (667)
. .....|+|+|||||||||..++++.|.|++|+..||+||++||+||.+|++ +..||||||||||
T Consensus 233 ~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT 312 (366)
T 2zfi_A 233 ETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLT 312 (366)
T ss_dssp TTTCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHH
T ss_pred CCCccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHH
Confidence 2 234579999999999999999999999999999999999999999999986 3479999999999
Q ss_pred hhhhcccCCCccceEEEEeCCC--ChhhhHHHHHHHHHhhhccccccc
Q 005960 315 RILQDSLGGTSHALMVACLNPG--EYQESVHTVSLAARSRHISNTLPS 360 (667)
Q Consensus 315 rLLqdsLgGnskt~mIa~vsP~--~~~ETlsTL~fA~rar~I~N~~~~ 360 (667)
|||||+||||++|+||+||||+ +++||++||+||+|||+|+|.+..
T Consensus 313 ~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~ 360 (366)
T 2zfi_A 313 WLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSV 360 (366)
T ss_dssp HHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCC
Confidence 9999999999999999999997 689999999999999999996544
No 13
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.2e-82 Score=684.45 Aligned_cols=327 Identities=34% Similarity=0.539 Sum_probs=253.2
Q ss_pred CCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCc---ceEEEecC--------CCCCCceeeeeceeeCCC
Q 005960 23 STSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNE---EVAVYLKD--------PDTIRSECYQLDSFFGQE 91 (667)
Q Consensus 23 ~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~---~~~v~~~~--------~~~~~~~~F~FD~Vf~~~ 91 (667)
...++|+|+|||||++.+|...+ ...+|.+.+...+.... .+.+.... ........|.||+||+++
T Consensus 7 d~~~~i~V~vRvRP~~~~E~~~~---~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~ 83 (355)
T 3lre_A 7 DLCHHMKVVVRVRPENTKEKAAG---FHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDET 83 (355)
T ss_dssp -----CEEEEEECCCCHHHHHTT---CCBSEEECSSSEEEEC------------------------CCEEEECSEEECTT
T ss_pred hccCCCEEEEEeCcCChHHHhcC---CceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCC
Confidence 45789999999999999997665 34566665543211100 01110000 001134579999999998
Q ss_pred CCchhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc----CCceEEEEEEEE
Q 005960 92 DESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS----TGSTAEISYYEV 167 (667)
Q Consensus 92 ~~sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~----~~~~v~vS~~EI 167 (667)
+ +|++||+.+++|+|+++++|||+||||||||||||||||+|+.+++|||||++++||+.++. ..+.+.+||+||
T Consensus 84 ~-~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EI 162 (355)
T 3lre_A 84 S-TQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEV 162 (355)
T ss_dssp C-CHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEE
T ss_pred C-ChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEE
Confidence 5 88999999999999999999999999999999999999999999999999999999998754 346899999999
Q ss_pred ecceeeeccCCCCCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeC
Q 005960 168 YMDRCYDLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLG 247 (667)
Q Consensus 168 YnE~v~DLL~~~~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~ 247 (667)
|||+|+|||.+. ..+.+++++.++++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+...
T Consensus 163 YnE~i~DLL~~~-~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 241 (355)
T 3lre_A 163 YNEQIRDLLVNS-GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDK 241 (355)
T ss_dssp ETTEEEESSSCC-CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEET
T ss_pred ECCEEEECcCCC-CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecC
Confidence 999999999865 4699999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CC--CCceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCC---CCCCCCCchhhhhhhcccC
Q 005960 248 DD--SKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNK---PRVPYRESKLTRILQDSLG 322 (667)
Q Consensus 248 ~~--~~~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~---~~IPYRdSkLTrLLqdsLg 322 (667)
.. ......|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||++++ .|||||||||||||||+||
T Consensus 242 ~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLg 321 (355)
T 3lre_A 242 TASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLG 321 (355)
T ss_dssp TSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSS
T ss_pred CCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcC
Confidence 32 233457999999999999999999999999999999999999999999998754 5999999999999999999
Q ss_pred CCccceEEEEeCCC--ChhhhHHHHHHHHHhhhc
Q 005960 323 GTSHALMVACLNPG--EYQESVHTVSLAARSRHI 354 (667)
Q Consensus 323 Gnskt~mIa~vsP~--~~~ETlsTL~fA~rar~I 354 (667)
||++|+|||||||+ +|+||++||+||+|||+|
T Consensus 322 Gnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 322 GNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp TTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred CCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999997 689999999999999986
No 14
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=3.5e-82 Score=678.67 Aligned_cols=316 Identities=37% Similarity=0.626 Sum_probs=258.6
Q ss_pred CCCCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCchhHHHH
Q 005960 21 STSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFY 100 (667)
Q Consensus 21 ~~~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~ 100 (667)
+..+.++|+|+|||||++++|...+ ...|+.+.+... .+.+. ..+.|.||+||++++ +|++||+
T Consensus 6 ~~~~~~~i~V~vRvRP~~~~E~~~~---~~~~~~~~~~~~-------~~~~~-----~~~~f~FD~Vf~~~~-~Q~~vy~ 69 (344)
T 4a14_A 6 PGAEEAPVRVALRVRPLLPKELLHG---HQSCLQVEPGLG-------RVTLG-----RDRHFGFHVVLAEDA-GQEAVYQ 69 (344)
T ss_dssp ---CCCCCEEEEEECCCCHHHHHTT---CCBCEEEEGGGT-------EEEET-----TTEEEECSEEECTTC-CHHHHHH
T ss_pred CCccccceEEEEEecccchHHHhcc---CeeEEEEcCCCc-------eEEec-----ccceEEEEEEEecCc-chhHHHH
Confidence 3456789999999999999997654 355676654322 23332 246799999999985 8899999
Q ss_pred hhccchhhhhcCCCCEEEEeeccCCCCCcceeccC------CCCCCChHHHHHHHHhhhcc---CCceEEEEEEEEecce
Q 005960 101 SEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGS------EERPGLMPLAMSKILSICQS---TGSTAEISYYEVYMDR 171 (667)
Q Consensus 101 ~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~------~~~~GLipral~~LF~~~~~---~~~~v~vS~~EIYnE~ 171 (667)
.+++|+|+++++|||+||||||||||||||||+|. .+++|||||++++||+.++. ..+.|++||+|||||+
T Consensus 70 ~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~ 149 (344)
T 4a14_A 70 ACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEE 149 (344)
T ss_dssp HHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTE
T ss_pred HHHHHHHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHH
Confidence 99999999999999999999999999999999997 46799999999999998865 3578999999999999
Q ss_pred eeeccCCC--CCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCC-
Q 005960 172 CYDLLEVK--TKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGD- 248 (667)
Q Consensus 172 v~DLL~~~--~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~- 248 (667)
|+|||++. ...+.+++++.++++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+....
T Consensus 150 i~DLL~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~ 229 (344)
T 4a14_A 150 FRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAP 229 (344)
T ss_dssp EEETTSSCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC---
T ss_pred HHHHHHhccccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCc
Confidence 99999854 457999999999999999999999999999999999999999999999999999999999999886432
Q ss_pred ------CCCceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCC---CCCCCCCchhhhhhhc
Q 005960 249 ------DSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNK---PRVPYRESKLTRILQD 319 (667)
Q Consensus 249 ------~~~~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~---~~IPYRdSkLTrLLqd 319 (667)
.......|+|+|||||||||..++++.|.|++|+..||+||++||+||.+|++++ .|||||||||||||||
T Consensus 230 ~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqd 309 (344)
T 4a14_A 230 SRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKD 309 (344)
T ss_dssp ---------CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTT
T ss_pred ccCCCccccceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHh
Confidence 2234567999999999999999999999999999999999999999999998743 5999999999999999
Q ss_pred ccCCCccceEEEEeCCC--ChhhhHHHHHHHHHhh
Q 005960 320 SLGGTSHALMVACLNPG--EYQESVHTVSLAARSR 352 (667)
Q Consensus 320 sLgGnskt~mIa~vsP~--~~~ETlsTL~fA~rar 352 (667)
+||||++|+||+||||+ +++||++||+||+|||
T Consensus 310 sLgGnskt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 310 SLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp SSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred hcCCCcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999999997 6999999999999986
No 15
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=6.4e-82 Score=672.59 Aligned_cols=319 Identities=36% Similarity=0.548 Sum_probs=269.3
Q ss_pred CCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCchhHHHHhhc
Q 005960 24 TSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYSEV 103 (667)
Q Consensus 24 ~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~~~v 103 (667)
.+++|+|+|||||++..|..... ...++.+...+. ..+.+... .....|.||+||++++ +|++||+. +
T Consensus 2 ~~~~i~V~vRvRP~~~~e~~~~~--~~~~~~~~~~~~------~~~~~~~~--~~~~~f~FD~Vf~~~~-~Q~~Vy~~-v 69 (330)
T 2h58_A 2 SKGNIRVIARVRPVTKEDGEGPE--ATNAVTFDADDD------SIIHLLHK--GKPVSFELDKVFSPQA-SQQDVFQE-V 69 (330)
T ss_dssp ---CEEEEEEECCCCGGGCSSGG--GSBCEEECSSCT------TEEEEEET--TEEEEEECSEEECTTC-CHHHHHTT-T
T ss_pred CCCCEEEEEEcCCCChhhcccCC--CccEEEEeCCCC------cEEEEcCC--CCeeEEecCeEeCCCC-CcHhHHHH-H
Confidence 35899999999999998854331 123444432211 12222111 2356899999999985 88999987 6
Q ss_pred cchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhccC----CceEEEEEEEEecceeeeccCCC
Q 005960 104 NPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQST----GSTAEISYYEVYMDRCYDLLEVK 179 (667)
Q Consensus 104 ~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~~----~~~v~vS~~EIYnE~v~DLL~~~ 179 (667)
.|+|+.+++|||+||||||||||||||||+|+.+++|||||++++||+.++.. .+.|++||+|||||+|+|||.+.
T Consensus 70 ~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~ 149 (330)
T 2h58_A 70 QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKE 149 (330)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCS
T ss_pred HHHHHHHhCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhccccc
Confidence 99999999999999999999999999999999999999999999999988643 47899999999999999999865
Q ss_pred CC---ceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCCCCceEEE
Q 005960 180 TK---EISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTG 256 (667)
Q Consensus 180 ~~---~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~s 256 (667)
.. .+.+++++.++++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.... .+....|
T Consensus 150 ~~~~l~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~~~s 228 (330)
T 2h58_A 150 PQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCS-TGLRTTG 228 (330)
T ss_dssp SCCCCCCEECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETT-TTEEEEE
T ss_pred ccccceEEEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecC-CCcEEEE
Confidence 32 3455568889999999999999999999999999999999999999999999999999999887543 3445689
Q ss_pred EEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcccCCCccceEEEEeCCC
Q 005960 257 KLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG 336 (667)
Q Consensus 257 kL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqdsLgGnskt~mIa~vsP~ 336 (667)
+|+|||||||||..++++.|.|++|+..||+||++|++||.+|.+++.|||||||||||||||+||||++|+||+||||+
T Consensus 229 kL~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~ 308 (330)
T 2h58_A 229 KLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPV 308 (330)
T ss_dssp EEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCB
T ss_pred EEEEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred --ChhhhHHHHHHHHHhhhcc
Q 005960 337 --EYQESVHTVSLAARSRHIS 355 (667)
Q Consensus 337 --~~~ETlsTL~fA~rar~I~ 355 (667)
+++||++||+||+|||+|+
T Consensus 309 ~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 309 EKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp GGGHHHHHHHHHHHHHHC---
T ss_pred cccHHHHHHHHHHHHHHhhCc
Confidence 6899999999999999986
No 16
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=2.9e-82 Score=681.06 Aligned_cols=324 Identities=36% Similarity=0.554 Sum_probs=251.1
Q ss_pred CCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcc-eEEEecCCCCCCceeeeeceeeCC-------CCCchhH
Q 005960 26 SKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEE-VAVYLKDPDTIRSECYQLDSFFGQ-------EDESVSK 97 (667)
Q Consensus 26 ~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~-~~v~~~~~~~~~~~~F~FD~Vf~~-------~~~sQ~~ 97 (667)
++|+|+|||||++.+|...+ ..+++.+.+... ..... .... ........+.|.||+||++ ..++|++
T Consensus 1 S~VkV~vRvRPl~~~E~~~~---~~~vv~~~~~~~-~~~~~~~~~~-~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~ 75 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLH---TKCVVDVDANKV-ILNPVNTNLS-KGDARGQPKVFAYDHCFWSMDESVKEKYAGQDI 75 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHT---CCBCEEEETTEE-EECCC------------CCEEEECSEEEECSCTTCTTTBCCHHH
T ss_pred CCcEEEEECCCCChhhhccC---CceEEEeCCCeE-EEeCCccccc-cccccCCceEEEeeEEeccCccccccccccHHH
Confidence 47999999999999997654 344555543211 11000 0000 1111223578999999963 2247899
Q ss_pred HHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc-----CCceEEEEEEEEeccee
Q 005960 98 IFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-----TGSTAEISYYEVYMDRC 172 (667)
Q Consensus 98 Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~-----~~~~v~vS~~EIYnE~v 172 (667)
||+.++.|+|+++++|||+||||||||||||||||+|+.+++|||||++++||+.++. ..+.|.+||+|||||+|
T Consensus 76 vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i 155 (354)
T 3gbj_A 76 VFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKV 155 (354)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEE
T ss_pred HHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCee
Confidence 9999999999999999999999999999999999999999999999999999987742 34789999999999999
Q ss_pred eeccCCCC--CceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCC--
Q 005960 173 YDLLEVKT--KEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGD-- 248 (667)
Q Consensus 173 ~DLL~~~~--~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~-- 248 (667)
+|||++.. ..+.+++++.++++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+...+
T Consensus 156 ~DLL~~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~ 235 (354)
T 3gbj_A 156 RDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVK 235 (354)
T ss_dssp EETTC------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTT
T ss_pred eEccCCCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccC
Confidence 99998753 57899999999999999999999999999999999999999999999999999999999999876432
Q ss_pred -CCCceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhcc------CCCCCCCCCchhhhhhhccc
Q 005960 249 -DSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNN------NKPRVPYRESKLTRILQDSL 321 (667)
Q Consensus 249 -~~~~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~------~~~~IPYRdSkLTrLLqdsL 321 (667)
+......|+|+|||||||||..++++.|.|++|+..||+||++||+||.+|++ +..|||||||||||||||+|
T Consensus 236 ~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsL 315 (354)
T 3gbj_A 236 SGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSL 315 (354)
T ss_dssp SCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHH
T ss_pred CCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHh
Confidence 22234579999999999999999999999999999999999999999999985 35799999999999999999
Q ss_pred CCCccceEEEEeCCC--ChhhhHHHHHHHHHhhhc
Q 005960 322 GGTSHALMVACLNPG--EYQESVHTVSLAARSRHI 354 (667)
Q Consensus 322 gGnskt~mIa~vsP~--~~~ETlsTL~fA~rar~I 354 (667)
|||++|+|||||||+ +|+|||+||+||.||++-
T Consensus 316 gGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~~ 350 (354)
T 3gbj_A 316 GGNSKTAMVATVSPAADNYDETLSTLRYADRAKHH 350 (354)
T ss_dssp STTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC--
T ss_pred CCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhhc
Confidence 999999999999997 699999999999999864
No 17
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=3.3e-81 Score=677.46 Aligned_cols=320 Identities=33% Similarity=0.521 Sum_probs=255.0
Q ss_pred CCCCCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCC-----CCCceeeeeceeeCCCCCc
Q 005960 20 NSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPD-----TIRSECYQLDSFFGQEDES 94 (667)
Q Consensus 20 ~~~~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~-----~~~~~~F~FD~Vf~~~~~s 94 (667)
+.+...++|+|+|||||++..|...+ ...+|.+.+.. .+.+...... ....+.|.||+||++++ +
T Consensus 45 ~~~~~~~~I~V~vRvRP~~~~E~~~~---~~~~v~~~~~~------~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~-s 114 (387)
T 2heh_A 45 TDPIEEHRICVCVRKRPLNKQELAKK---EIDVISIPSKC------LLLVHEPKLKVDLTKYLENQAFCFDFAFDETA-S 114 (387)
T ss_dssp TSCCCCCSEEEEEEECCCCHHHHHTT---CCBCEECCBSS------EEEEEEEEECTTCCEEEEEEEEECSEEECTTC-C
T ss_pred CCCCCCCCeEEEEECCCCChHHhccC---CceEEEECCCC------EEEEeCCCccccccccccccEEeeeEEEecCC-C
Confidence 34455899999999999999997655 33456554332 1222211110 01245799999999985 8
Q ss_pred hhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccC------CCCCCChHHHHHHHHhhhcc-----CCceEEEE
Q 005960 95 VSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGS------EERPGLMPLAMSKILSICQS-----TGSTAEIS 163 (667)
Q Consensus 95 Q~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~------~~~~GLipral~~LF~~~~~-----~~~~v~vS 163 (667)
|++||+.+++|+|+++++|||+||||||||||||||||+|+ ..++||+||++++||..++. ..+.|++|
T Consensus 115 Q~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS 194 (387)
T 2heh_A 115 NEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVT 194 (387)
T ss_dssp HHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEE
T ss_pred ceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEE
Confidence 89999999999999999999999999999999999999996 34689999999999998753 56899999
Q ss_pred EEEEecceeeeccCCCCCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEE
Q 005960 164 YYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVS 243 (667)
Q Consensus 164 ~~EIYnE~v~DLL~~~~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~ 243 (667)
|+|||||+|+|||++. ..+.+++|+.++++|.||+++.|.+++|++++|..|..+|++++|.||..|||||+||+|+|.
T Consensus 195 ~~EIYnE~v~DLL~~~-~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~ 273 (387)
T 2heh_A 195 FFEIYNGKLFDLLNKK-AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILR 273 (387)
T ss_dssp EEEEETTEEEETTTTT-EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEE
T ss_pred EEEecCCeEEECCCCC-ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEE
Confidence 9999999999999875 468999999999999999999999999999999999999999999999999999999999997
Q ss_pred EEeCCCCCceEEEEEEEEECCCCCCccccc-cccchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcc-c
Q 005960 244 TLLGDDSKAALTGKLNLIDLAGNEDNRRTC-NEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDS-L 321 (667)
Q Consensus 244 ~~~~~~~~~~~~skL~fVDLAGSEr~~~t~-~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqds-L 321 (667)
+. ....|+|+|||||||||..+++ ..+.+++|+..||+||++||+||.+|.+++.|||||||||||||||+ |
T Consensus 274 ~~------~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrlLqdsll 347 (387)
T 2heh_A 274 AK------GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFI 347 (387)
T ss_dssp SS------SSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGGS
T ss_pred EC------CeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHHHhhhcc
Confidence 53 2468999999999999998876 46778889999999999999999999999999999999999999999 5
Q ss_pred CCCccceEEEEeCCC--ChhhhHHHHHHHHHhhhccc
Q 005960 322 GGTSHALMVACLNPG--EYQESVHTVSLAARSRHISN 356 (667)
Q Consensus 322 gGnskt~mIa~vsP~--~~~ETlsTL~fA~rar~I~N 356 (667)
|||++|+|||||||+ +++||++||+||+|||+|++
T Consensus 348 GgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~ 384 (387)
T 2heh_A 348 GENSRTCMIATISPGISSCEYTLNTLRYADRVKELSP 384 (387)
T ss_dssp STTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC---
T ss_pred CCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcC
Confidence 999999999999997 68999999999999999987
No 18
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=4.2e-81 Score=672.72 Aligned_cols=323 Identities=30% Similarity=0.503 Sum_probs=266.4
Q ss_pred CeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCchhHHHHhhccch
Q 005960 27 KVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYSEVNPL 106 (667)
Q Consensus 27 ~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~~~v~pl 106 (667)
+|||+|||||++..|...+ ...+|.+.+...+... ................|.||+||++++ +|++||+.+++|+
T Consensus 1 ~IrV~vRvRP~~~~E~~~~---~~~~v~~~~~~~i~i~-~~~~~~~~~~~~~~~~F~FD~Vf~~~~-~Q~~Vy~~~~~pl 75 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKK---DSDIITVKNNCTLYID-EPRYKVDMTKYIERHEFIVDKVFDDTV-DNFTVYENTIKPL 75 (360)
T ss_dssp CEEEEEEECCCCHHHHHTT---CCBCEEEEETTEEEEE-EEEEETTTEEEEEEEEEECSEEECTTC-CHHHHHHHHTHHH
T ss_pred CeEEEEECCCCChHHhccC---CceEEEECCCCEEEEe-CCccccccccccccceEEeeeEecCCC-CHHHHHHHHhhhh
Confidence 5999999999999997654 3456666554321110 000000000001245799999999985 8899999999999
Q ss_pred hhhhcC-CCCEEEEeeccCCCCCcceeccCC-----CCCCChHHHHHHHHhhhc----cCCceEEEEEEEEecceeeecc
Q 005960 107 IPGIFH-GRNATVFAYGATGSGKTYTMQGSE-----ERPGLMPLAMSKILSICQ----STGSTAEISYYEVYMDRCYDLL 176 (667)
Q Consensus 107 V~~vl~-G~N~tIfaYGqTGSGKTyTm~G~~-----~~~GLipral~~LF~~~~----~~~~~v~vS~~EIYnE~v~DLL 176 (667)
|+++++ |||+||||||||||||||||+|+. +++|||||++++||+.++ ...+.|++||+|||||+|+|||
T Consensus 76 v~~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL 155 (360)
T 1ry6_A 76 IIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLL 155 (360)
T ss_dssp HHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESC
T ss_pred hhhhccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcc
Confidence 999996 999999999999999999999974 678999999999999875 3467899999999999999999
Q ss_pred CCCCCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCCCCceEEE
Q 005960 177 EVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTG 256 (667)
Q Consensus 177 ~~~~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~s 256 (667)
.+.. .+.+++++.++++|.|++++.|.+++|++++|..|..+|++++|.||..|||||+||+|+|.+.. .....|
T Consensus 156 ~~~~-~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~----~~~~~s 230 (360)
T 1ry6_A 156 QKRK-MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN----KNTSLG 230 (360)
T ss_dssp CC------------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT----TTEEEE
T ss_pred cCCc-cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc----CCccee
Confidence 8654 57788999999999999999999999999999999999999999999999999999999998642 235679
Q ss_pred EEEEEECCCCCCcccccccc-chhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcccCCCccceEEEEeCC
Q 005960 257 KLNLIDLAGNEDNRRTCNEG-IRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNP 335 (667)
Q Consensus 257 kL~fVDLAGSEr~~~t~~~g-~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqdsLgGnskt~mIa~vsP 335 (667)
+|+|||||||||..++++.+ .+++|+..||+||++||+||.+|..++.|||||||||||||||+||||++|+|||||||
T Consensus 231 kL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP 310 (360)
T 1ry6_A 231 KIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISP 310 (360)
T ss_dssp EEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECC
T ss_pred EEEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCC
Confidence 99999999999999998876 46889999999999999999999999999999999999999999999999999999999
Q ss_pred C--ChhhhHHHHHHHHHhhhcccccc
Q 005960 336 G--EYQESVHTVSLAARSRHISNTLP 359 (667)
Q Consensus 336 ~--~~~ETlsTL~fA~rar~I~N~~~ 359 (667)
+ +++||++||+||+|||+|+|.+.
T Consensus 311 ~~~~~~ETlsTLrfA~rak~i~n~~~ 336 (360)
T 1ry6_A 311 TISCCEQTLNTLRYSSRVKNKGNSKL 336 (360)
T ss_dssp BGGGHHHHHHHHHHHHHHCC------
T ss_pred CcccHHHHHHHHHHHHHHhhcccCcc
Confidence 7 69999999999999999999644
No 19
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=2.6e-80 Score=664.37 Aligned_cols=321 Identities=30% Similarity=0.451 Sum_probs=261.2
Q ss_pred CCCeEEEEEcCCCCC-hhhhhhcCCCceEEEEcCCCCcccCcceEEEecC-CCCCCceeeeeceeeCCCCCchhHHHHhh
Q 005960 25 SSKVRVIVRVRPFLS-QEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD-PDTIRSECYQLDSFFGQEDESVSKIFYSE 102 (667)
Q Consensus 25 ~~~VkV~vRvRP~~~-~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~-~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~~~ 102 (667)
+++|||+|||||++. .|. ....++.+...+... ....+.+.. ......+.|.||+||++++ +|++||+.
T Consensus 2 k~nIrV~vRvRP~~~~~e~-----~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~~Vy~~- 72 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLEN-----SDTSLINVNEFDDNS--GVQSMEVTKIQNTAQVHEFKFDKIFDQQD-TNVDVFKE- 72 (347)
T ss_dssp -CEEEEEEEECCCCTTTCC-----CTTEEEEECCCBTTT--TBEEEEEEEGGGTTCEEEEEESEEECTTC-CHHHHHHH-
T ss_pred CCCeEEEEEeCCCCccccc-----CCCceEEEecccCCC--CceEEEEecCCCCcCceEEeeCEEECCCC-CHHHHHHH-
Confidence 589999999999987 342 123455554321100 112333322 1223457899999999986 88999987
Q ss_pred ccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc-----CCceEEEEEEEEecceeeeccC
Q 005960 103 VNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-----TGSTAEISYYEVYMDRCYDLLE 177 (667)
Q Consensus 103 v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~-----~~~~v~vS~~EIYnE~v~DLL~ 177 (667)
+.|+|+++++|||+||||||||||||||||+|. ++|||||++++||+.++. ..+.|++||+|||||+|+|||+
T Consensus 73 v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 150 (347)
T 1f9v_A 73 VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLR 150 (347)
T ss_dssp HHHHHGGGGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC
T ss_pred HHHHHHHhcCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccC
Confidence 679999999999999999999999999999996 469999999999998742 4679999999999999999998
Q ss_pred CCCC---------ceeeeeC-CCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeC
Q 005960 178 VKTK---------EISILDD-KDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLG 247 (667)
Q Consensus 178 ~~~~---------~l~i~ed-~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~ 247 (667)
+... .+.++++ ..++++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|.+...
T Consensus 151 ~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 230 (347)
T 1f9v_A 151 SDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNA 230 (347)
T ss_dssp -------------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC
T ss_pred CccccccccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecC
Confidence 7643 3567765 56789999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCC---CCCCCCCchhhhhhhcccCCC
Q 005960 248 DDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNK---PRVPYRESKLTRILQDSLGGT 324 (667)
Q Consensus 248 ~~~~~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~---~~IPYRdSkLTrLLqdsLgGn 324 (667)
. .+....|+|+|||||||||..++++.|.|++|+..||+||++||+||.+|++++ .|||||||||||||||+||||
T Consensus 231 ~-~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGn 309 (347)
T 1f9v_A 231 K-TGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGD 309 (347)
T ss_dssp ---CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTT
T ss_pred C-CCceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCC
Confidence 3 334568999999999999999999999999999999999999999999998876 899999999999999999999
Q ss_pred ccceEEEEeCCC--ChhhhHHHHHHHHHhhhcccc
Q 005960 325 SHALMVACLNPG--EYQESVHTVSLAARSRHISNT 357 (667)
Q Consensus 325 skt~mIa~vsP~--~~~ETlsTL~fA~rar~I~N~ 357 (667)
++|+|||||||+ +++||++||+||+|+++|++.
T Consensus 310 skt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~ 344 (347)
T 1f9v_A 310 SKTLMFVNISPSSSHINETLNSLRFASKVNSTRLV 344 (347)
T ss_dssp CEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC
T ss_pred ccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccC
Confidence 999999999997 699999999999999999874
No 20
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=1.8e-80 Score=666.34 Aligned_cols=321 Identities=31% Similarity=0.457 Sum_probs=253.3
Q ss_pred CCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecC-CCCCCceeeeeceeeCCCCCchhHHHHhh
Q 005960 24 TSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD-PDTIRSECYQLDSFFGQEDESVSKIFYSE 102 (667)
Q Consensus 24 ~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~-~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~~~ 102 (667)
.+++|||+|||||++..|.... ...++...+... ....+.+.. ......+.|.||+||++++ +|++||+.
T Consensus 3 lkgnIrV~vRvRP~~~~E~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~-~Q~~vf~~- 73 (349)
T 3t0q_A 3 LRGNIRVYCRVRPPLLNEPQDM---SHILIEKFNEAK----GAQSLTINRNEGRILSYNFQFDMIFEPSH-TNKEIFEE- 73 (349)
T ss_dssp --CEEEEEEEECCCCTTSCCCC---TTEEECCCBC------CBEEEEEEECC--CEEEEEEESEEECTTC-CHHHHHHH-
T ss_pred CCCCcEEEEEeCCCCccccccC---ceEEEeeccCCC----CceEEEEcCCCCcccceeeecCEEECCCc-cHHHHHHH-
Confidence 3689999999999999885432 233333222211 112233222 2223356899999999986 88999986
Q ss_pred ccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc-----CCceEEEEEEEEecceeeeccC
Q 005960 103 VNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-----TGSTAEISYYEVYMDRCYDLLE 177 (667)
Q Consensus 103 v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~-----~~~~v~vS~~EIYnE~v~DLL~ 177 (667)
+.|+|+++++|||+||||||||||||||||+|+. +|||||++++||+.++. ..+.|.+||+|||||+|+|||.
T Consensus 74 v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~~--~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 151 (349)
T 3t0q_A 74 IRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAG--DGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLR 151 (349)
T ss_dssp HHHHHHGGGTTCEEEEEEECSTTSSHHHHHHSTT--TSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC
T ss_pred HHHHHHHHHCCcceeEEEeCCCCCCCceEeCCCC--CchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccc
Confidence 6799999999999999999999999999999964 59999999999997653 3578999999999999999998
Q ss_pred CCC-----------CceeeeeCC-CCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEE
Q 005960 178 VKT-----------KEISILDDK-DGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTL 245 (667)
Q Consensus 178 ~~~-----------~~l~i~ed~-~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~ 245 (667)
+.. ..+.++++. .++++|.|++++.|.+++|++.+|..|.++|++++|.+|..|||||+||+|+|.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~ 231 (349)
T 3t0q_A 152 DFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGR 231 (349)
T ss_dssp ---------------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEE
T ss_pred ccccccccccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEE
Confidence 643 346676654 56799999999999999999999999999999999999999999999999999987
Q ss_pred eCCCCCceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCC---CCCCCCCchhhhhhhcccC
Q 005960 246 LGDDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNK---PRVPYRESKLTRILQDSLG 322 (667)
Q Consensus 246 ~~~~~~~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~---~~IPYRdSkLTrLLqdsLg 322 (667)
.... +....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||++++ .|||||||||||||||+||
T Consensus 232 ~~~~-~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLg 310 (349)
T 3t0q_A 232 NLHT-GETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLV 310 (349)
T ss_dssp ETTT-CCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSS
T ss_pred ecCC-CCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcC
Confidence 6543 34568999999999999999999999999999999999999999999998765 4999999999999999999
Q ss_pred CCccceEEEEeCCC--ChhhhHHHHHHHHHhhhccc
Q 005960 323 GTSHALMVACLNPG--EYQESVHTVSLAARSRHISN 356 (667)
Q Consensus 323 Gnskt~mIa~vsP~--~~~ETlsTL~fA~rar~I~N 356 (667)
||++|+|||||||+ +++||++||+||+|++.|+-
T Consensus 311 Gnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~ 346 (349)
T 3t0q_A 311 GDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKI 346 (349)
T ss_dssp TTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC---
T ss_pred CCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhccc
Confidence 99999999999998 69999999999999999875
No 21
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1e-80 Score=672.72 Aligned_cols=325 Identities=32% Similarity=0.456 Sum_probs=243.1
Q ss_pred CCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecC-----------CCCCCceeeeeceeeCCC
Q 005960 23 STSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD-----------PDTIRSECYQLDSFFGQE 91 (667)
Q Consensus 23 ~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~-----------~~~~~~~~F~FD~Vf~~~ 91 (667)
..+++|||+|||||+++.|...... ++.+.........+..++.+.. ........|.||+||+++
T Consensus 19 ~~~~~irV~vRvRP~~~~E~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~ 94 (376)
T 2rep_A 19 SLKGNIRVFCRVRPVLPGEPTPPPG----LLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPG 94 (376)
T ss_dssp ----CEEEEEEECCCCTTSCCCCGG----GSBCCC------CCCCEEECCC-----------------CEEECSEEECTT
T ss_pred ccCCCeEEEEEcCCCChhhcccCCc----eEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCc
Confidence 4568999999999999998643211 1111110000000111222211 111224579999999998
Q ss_pred CCchhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCC----CCCChHHHHHHHHhhhcc-----CCceEEE
Q 005960 92 DESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEE----RPGLMPLAMSKILSICQS-----TGSTAEI 162 (667)
Q Consensus 92 ~~sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~----~~GLipral~~LF~~~~~-----~~~~v~v 162 (667)
+ +|++||+. +.|+|+++++|||+||||||||||||||||+|... ++|||||++++||+.++. ..+.|++
T Consensus 95 ~-~Q~~Vy~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~v 172 (376)
T 2rep_A 95 S-GQDEVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVA 172 (376)
T ss_dssp C-CHHHHHHH-HHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEE
T ss_pred c-cchhhhhh-HHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 5 88999997 67999999999999999999999999999999753 689999999999997753 3578999
Q ss_pred EEEEEecceeeeccCCC-----CCceeeeeC--CCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcE
Q 005960 163 SYYEVYMDRCYDLLEVK-----TKEISILDD--KDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSH 235 (667)
Q Consensus 163 S~~EIYnE~v~DLL~~~-----~~~l~i~ed--~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH 235 (667)
||+|||||+|+|||++. ...+.++++ +.++++|.|++++.|.+++|++++|..|.++|++++|.||..|||||
T Consensus 173 S~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH 252 (376)
T 2rep_A 173 SYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSH 252 (376)
T ss_dssp EEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSE
T ss_pred EEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCce
Confidence 99999999999999874 235778887 67899999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEEeCCCCCceEEEEEEEEECCCCCCcccccccc----chhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCc
Q 005960 236 GVLVISVSTLLGDDSKAALTGKLNLIDLAGNEDNRRTCNEG----IRLLESAKINQSLFALSNVIHALNNNKPRVPYRES 311 (667)
Q Consensus 236 ~If~I~v~~~~~~~~~~~~~skL~fVDLAGSEr~~~t~~~g----~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdS 311 (667)
+||+|+|.+.... ......|+|+|||||||||..++++.| .|++|+..||+||++||+||.||++++.|||||||
T Consensus 253 ~Ifti~v~~~~~~-~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdS 331 (376)
T 2rep_A 253 SVFQLQISGEHSS-RGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNS 331 (376)
T ss_dssp EEEEEEEEEEESS-SCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCSCCCGGGS
T ss_pred EEEEEEEEEEecC-CCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccCCcCC
Confidence 9999999887643 334567999999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhhhhcccCCCccceEEEEeCCC--ChhhhHHHHHHHHHhhhc
Q 005960 312 KLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSLAARSRHI 354 (667)
Q Consensus 312 kLTrLLqdsLgGnskt~mIa~vsP~--~~~ETlsTL~fA~rar~I 354 (667)
||||||||+||||++|+|||||||+ +++|||+||+||+|++++
T Consensus 332 kLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 332 KLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999997 699999999999999863
No 22
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=1.8e-80 Score=675.60 Aligned_cols=321 Identities=33% Similarity=0.512 Sum_probs=257.3
Q ss_pred CCCCCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCC-----CCCceeeeeceeeCCCCCc
Q 005960 20 NSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPD-----TIRSECYQLDSFFGQEDES 94 (667)
Q Consensus 20 ~~~~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~-----~~~~~~F~FD~Vf~~~~~s 94 (667)
+++...++|+|+|||||++..|...+ ...+|.+.+.. .+.+...... ......|.||+||++++ +
T Consensus 65 ~~~~~~~~I~V~vRvRPl~~~E~~~~---~~~~v~~~~~~------~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~-t 134 (410)
T 1v8k_A 65 TDPIEEHRICVCVRKRPLNKQELAKK---EIDVISVPSKC------LLLVHEPKLKVDLTKYLENQAFCFDFAFDETA-S 134 (410)
T ss_dssp TCTTSCCCEEEEEEECCCCHHHHHTT---CCBCEECCSSS------EEEEEEEEECTTCCEEEEEEEEECSEEECTTC-C
T ss_pred CCcCCCCCeEEEEEeCCCChhHhhcC---CccEEEECCCC------EEEEecCcccccccccccceEEeeeEEEecCC-C
Confidence 34445899999999999999997655 33456554332 1222211111 01246799999999985 8
Q ss_pred hhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCC------CCCCChHHHHHHHHhhhcc-----CCceEEEE
Q 005960 95 VSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSE------ERPGLMPLAMSKILSICQS-----TGSTAEIS 163 (667)
Q Consensus 95 Q~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~------~~~GLipral~~LF~~~~~-----~~~~v~vS 163 (667)
|++||+.+++|+|+++++|||+||||||||||||||||+|+. .++||+||++++||..++. ..+.|.+|
T Consensus 135 Q~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS 214 (410)
T 1v8k_A 135 NEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVT 214 (410)
T ss_dssp HHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEE
T ss_pred hhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEE
Confidence 899999999999999999999999999999999999999963 4689999999999998753 56899999
Q ss_pred EEEEecceeeeccCCCCCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEE
Q 005960 164 YYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVS 243 (667)
Q Consensus 164 ~~EIYnE~v~DLL~~~~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~ 243 (667)
|+|||||+|+|||++. ..+.+++|+.++++|.||+++.|.|++|++.+|..|..+|++++|.||..|||||+||+|+|.
T Consensus 215 ~lEIYnE~i~DLL~~~-~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~ 293 (410)
T 1v8k_A 215 FFEIYNGKVFDLLNKK-AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR 293 (410)
T ss_dssp EEEEETTEEEETTTTT-EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEE
T ss_pred EEEeeCCEEEECCCCC-CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEE
Confidence 9999999999999875 468999999999999999999999999999999999999999999999999999999999997
Q ss_pred EEeCCCCCceEEEEEEEEECCCCCCccccc-cccchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcc-c
Q 005960 244 TLLGDDSKAALTGKLNLIDLAGNEDNRRTC-NEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDS-L 321 (667)
Q Consensus 244 ~~~~~~~~~~~~skL~fVDLAGSEr~~~t~-~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqds-L 321 (667)
+. ....|+|+|||||||||..+++ ..+.+++|+..||+||++||+||.+|..++.||||||||||+||||+ |
T Consensus 294 ~~------~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLTrLLqdsll 367 (410)
T 1v8k_A 294 TK------GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFI 367 (410)
T ss_dssp SS------SSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHH
T ss_pred eC------CcceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhHHHHhhccc
Confidence 53 2368999999999999998876 46778889999999999999999999999999999999999999999 6
Q ss_pred CCCccceEEEEeCCC--ChhhhHHHHHHHHHhhhcccc
Q 005960 322 GGTSHALMVACLNPG--EYQESVHTVSLAARSRHISNT 357 (667)
Q Consensus 322 gGnskt~mIa~vsP~--~~~ETlsTL~fA~rar~I~N~ 357 (667)
|||++|+|||||||+ +++|||+||+||+||+.|..+
T Consensus 368 GgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~ 405 (410)
T 1v8k_A 368 GENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHH 405 (410)
T ss_dssp SSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC--
T ss_pred CCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCC
Confidence 999999999999997 699999999999999999763
No 23
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-80 Score=666.77 Aligned_cols=316 Identities=29% Similarity=0.480 Sum_probs=247.5
Q ss_pred CCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCC-------CCCCceeeeeceeeCCCCCch
Q 005960 23 STSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDP-------DTIRSECYQLDSFFGQEDESV 95 (667)
Q Consensus 23 ~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~-------~~~~~~~F~FD~Vf~~~~~sQ 95 (667)
..+++|||+|||||+.+.|.. ++.+.+.. ..+.+..... .....+.|.||+||++ ++|
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~--------~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~--~sQ 85 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHE--------MIRYGDDK-----RSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLHD--ASQ 85 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTT--------TEEECTTS-----SEEEEECCCCSSHHHHTTSCCEEEEECSEEEES--CCH
T ss_pred CCCCCEEEEEEcCCCCccccc--------ceeecCCC-----cEEEEecCCccccccccCCcCceEeecCccCCC--CCH
Confidence 457899999999999876632 12222111 1122221111 1123467999999973 478
Q ss_pred hHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCC---CCCChHHHHHHHHhhhcc---CCceEEEEEEEEec
Q 005960 96 SKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEE---RPGLMPLAMSKILSICQS---TGSTAEISYYEVYM 169 (667)
Q Consensus 96 ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~---~~GLipral~~LF~~~~~---~~~~v~vS~~EIYn 169 (667)
++||+.+++|+|+++++|||+||||||||||||||||+|... ++|||||++++||+.++. ..+.|++||+||||
T Consensus 86 ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYn 165 (359)
T 3nwn_A 86 DLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYN 165 (359)
T ss_dssp HHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEec
Confidence 999999999999999999999999999999999999999754 489999999999998754 45789999999999
Q ss_pred ceeeeccCCC------CCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEE
Q 005960 170 DRCYDLLEVK------TKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVS 243 (667)
Q Consensus 170 E~v~DLL~~~------~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~ 243 (667)
|+|+|||++. ...+.+++++. ++++.|++++.|.+.+|++++|..|..+|.+++|.+|..|||||+||+|+|.
T Consensus 166 E~i~DLL~~~~~~~~~~~~~~~~~~~~-g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~ 244 (359)
T 3nwn_A 166 ESLFDLLSTLPYVGPSVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLE 244 (359)
T ss_dssp TEEEETTSSSTTSCTTTSCCEEEEETT-EEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEE
T ss_pred cccccccccccccccccccceEEecCC-ceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEE
Confidence 9999999853 23466777765 5999999999999999999999999999999999999999999999999998
Q ss_pred EEeCC-CCCceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccC-CCCCCCCCchhhhhhhccc
Q 005960 244 TLLGD-DSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNN-KPRVPYRESKLTRILQDSL 321 (667)
Q Consensus 244 ~~~~~-~~~~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~-~~~IPYRdSkLTrLLqdsL 321 (667)
+.... .......|+|+|||||||||..++++.|.+++|+..||+||++||+||.+|+++ +.|||||||||||||||+|
T Consensus 245 ~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsL 324 (359)
T 3nwn_A 245 AHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSL 324 (359)
T ss_dssp EC-------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHH
T ss_pred eecccccCcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhc
Confidence 75432 234456799999999999999999999999999999999999999999999875 4699999999999999999
Q ss_pred CCCccceEEEEeCCC--ChhhhHHHHHHHHHhhhc
Q 005960 322 GGTSHALMVACLNPG--EYQESVHTVSLAARSRHI 354 (667)
Q Consensus 322 gGnskt~mIa~vsP~--~~~ETlsTL~fA~rar~I 354 (667)
|||++|+|||||||+ +++||++||+||+|||+|
T Consensus 325 gGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 325 GGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp SSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred CCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999997 699999999999999986
No 24
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=2.8e-80 Score=665.93 Aligned_cols=321 Identities=29% Similarity=0.476 Sum_probs=251.3
Q ss_pred CCCCCCCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCC-------CCCceeeeeceeeCC
Q 005960 18 IPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPD-------TIRSECYQLDSFFGQ 90 (667)
Q Consensus 18 ~~~~~~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~-------~~~~~~F~FD~Vf~~ 90 (667)
.|.+...+++|||+|||||+.+.+. .++.+.+.. ..+.+...... ....+.|.||+||+
T Consensus 15 ~~~~~~~~g~IrV~vRvRP~~~~~~--------~~~~~~~~~-----~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~- 80 (358)
T 2nr8_A 15 VPRGSGTRKKVHAFVRVKPTDDFAH--------EMIRYGDDK-----RSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH- 80 (358)
T ss_dssp --------CCEEEEEEECCCSSCCT--------TTEEECTTS-----SEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-
T ss_pred ccCCCCCCCCeEEEEEcCCCCCCcc--------ceeEECCCC-----CEEEEecCCccccccccCCCcceEEECCeecC-
Confidence 4555667899999999999865431 223333221 12333332211 12346799999995
Q ss_pred CCCchhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCC---CCChHHHHHHHHhhhcc---CCceEEEEE
Q 005960 91 EDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEER---PGLMPLAMSKILSICQS---TGSTAEISY 164 (667)
Q Consensus 91 ~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~---~GLipral~~LF~~~~~---~~~~v~vS~ 164 (667)
+ ++|++||+.+++|+|+++++|||+||||||||||||||||+|..++ +|||||++++||+.++. ..+.|++||
T Consensus 81 ~-~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~ 159 (358)
T 2nr8_A 81 D-ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSY 159 (358)
T ss_dssp S-CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEE
T ss_pred C-cCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEE
Confidence 4 4889999999999999999999999999999999999999998764 89999999999998865 457999999
Q ss_pred EEEecceeeeccCCC------CCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEE
Q 005960 165 YEVYMDRCYDLLEVK------TKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVL 238 (667)
Q Consensus 165 ~EIYnE~v~DLL~~~------~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If 238 (667)
+|||||+|+|||++. ...+.+++++ .+++|+|++++.|.+++|++++|..|.++|++++|.+|..|||||+||
T Consensus 160 ~EIYnE~i~DLL~~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If 238 (358)
T 2nr8_A 160 LEIYNESLFDLLSTLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIF 238 (358)
T ss_dssp EEEETTEEEETTSSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEE
T ss_pred EEEeCCeeeECcCCccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEE
Confidence 999999999999863 3568899998 569999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCC-CCCceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCC-CCCCCCCchhhhh
Q 005960 239 VISVSTLLGD-DSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNK-PRVPYRESKLTRI 316 (667)
Q Consensus 239 ~I~v~~~~~~-~~~~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~-~~IPYRdSkLTrL 316 (667)
+|+|.+.... .......|+|+|||||||||..++++.|.+++|+..||+||++||+||.||++++ .||||||||||||
T Consensus 239 ~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~L 318 (358)
T 2nr8_A 239 TIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHA 318 (358)
T ss_dssp EEEEEEC-------CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHH
T ss_pred EEEEEEEeccCCCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHH
Confidence 9999875432 2334567999999999999999999999999999999999999999999998754 6999999999999
Q ss_pred hhcccCCCccceEEEEeCCC--ChhhhHHHHHHHHHhhhc
Q 005960 317 LQDSLGGTSHALMVACLNPG--EYQESVHTVSLAARSRHI 354 (667)
Q Consensus 317 LqdsLgGnskt~mIa~vsP~--~~~ETlsTL~fA~rar~I 354 (667)
|||+||||++|+||+||+|+ +++||++||+||+|||.|
T Consensus 319 LqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 319 LKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp THHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999997 699999999999999976
No 25
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.2e-78 Score=663.81 Aligned_cols=316 Identities=32% Similarity=0.502 Sum_probs=259.6
Q ss_pred CCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCC---CCCceeeeeceeeCCCCCchhHHHHh
Q 005960 25 SSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPD---TIRSECYQLDSFFGQEDESVSKIFYS 101 (667)
Q Consensus 25 ~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~---~~~~~~F~FD~Vf~~~~~sQ~~Vf~~ 101 (667)
+++|+|+|||||+++.|.... .+.+...+... +.+...+.. ......|.||+||++++ +|++||+
T Consensus 58 ~gnIrV~vRvRP~~~~E~~~~----~~~~~~~~~~~------v~~~~~~~~~~~~~~~~~F~FD~VF~~~~-~Q~~Vf~- 125 (412)
T 3u06_A 58 RDNIRVFCRIRPPLESEENRM----CCTWTYHDEST------VELQSIDAQAKSKMGQQIFSFDQVFHPLS-SQSDIFE- 125 (412)
T ss_dssp TCSEEEEEEECCCCGGGTTSC----BCEEEEEETTE------EEEECCC-------CCCEEECSEEECTTC-CHHHHHT-
T ss_pred CCCEEEEEEcCCCCchhccCc----ceEEEecCCCE------EEEecCCcccccccCceEEeeCeEcCCCC-CHHHHHH-
Confidence 589999999999998885322 22333333321 222211111 11246799999999986 8899997
Q ss_pred hccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc-----CCceEEEEEEEEecceeeecc
Q 005960 102 EVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-----TGSTAEISYYEVYMDRCYDLL 176 (667)
Q Consensus 102 ~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~-----~~~~v~vS~~EIYnE~v~DLL 176 (667)
.+.|+|+++++|||+||||||||||||||||+|.++++|||||++++||+.++. ..+.|.+||+|||||+|+|||
T Consensus 126 ~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL 205 (412)
T 3u06_A 126 MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL 205 (412)
T ss_dssp TTHHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETT
T ss_pred HHHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcC
Confidence 578999999999999999999999999999999999999999999999997753 457899999999999999999
Q ss_pred CCCCCcee--eeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCCCCceE
Q 005960 177 EVKTKEIS--ILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAAL 254 (667)
Q Consensus 177 ~~~~~~l~--i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~ 254 (667)
.+....+. +.+++.++++|.|++++.|.+++|++.+|..|..+|++++|.+|..|||||+||+|+|.+..... ....
T Consensus 206 ~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~ 284 (412)
T 3u06_A 206 SNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEK-QEIS 284 (412)
T ss_dssp CCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTT-TEEE
T ss_pred CCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCC-CCEE
Confidence 87766544 44678899999999999999999999999999999999999999999999999999998876533 3456
Q ss_pred EEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcccCCCccceEEEEeC
Q 005960 255 TGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLN 334 (667)
Q Consensus 255 ~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqdsLgGnskt~mIa~vs 334 (667)
.|+|+|||||||||.. .+.|++|+.+||+||++||+||.||++++.|||||||||||||||+||||++|+||+|||
T Consensus 285 ~~kL~lVDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vs 360 (412)
T 3u06_A 285 VGSINLVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVS 360 (412)
T ss_dssp EEEEEEEECCCCCC--------------CTTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEEC
T ss_pred EEEEEEEECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCceEEEEEEeC
Confidence 7999999999999874 468999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--ChhhhHHHHHHHHHhhhcccc
Q 005960 335 PG--EYQESVHTVSLAARSRHISNT 357 (667)
Q Consensus 335 P~--~~~ETlsTL~fA~rar~I~N~ 357 (667)
|+ +|+||++||+||+|++.|+..
T Consensus 361 P~~~~~~ETl~TLrfA~rv~~i~~~ 385 (412)
T 3u06_A 361 PFQDCFQESVKSLRFAASVNSCKMT 385 (412)
T ss_dssp CBGGGHHHHHHHHHHHHHHHHHCC-
T ss_pred CChhhHHHHHHHHHHHHHHhhcccc
Confidence 97 599999999999999999863
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-78 Score=661.01 Aligned_cols=322 Identities=31% Similarity=0.455 Sum_probs=263.2
Q ss_pred CCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEe-cCCCCCCceeeeeceeeCCCCCchhHHHHhhc
Q 005960 25 SSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYL-KDPDTIRSECYQLDSFFGQEDESVSKIFYSEV 103 (667)
Q Consensus 25 ~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~-~~~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~~~v 103 (667)
+|+|||+|||||+...+... ...++.+...+... ....+.+ ........+.|.||+||++++ +|++||+. +
T Consensus 58 kgnIrV~vRvRP~~~~~e~~----~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~F~FD~VF~~~~-~Q~~Vf~~-v 129 (403)
T 4etp_A 58 RGNIRVYLRIRPALKNLENS----DTSLINVNEFDDNS--GVQSMEVTKIQNTAQVHEFKFDKIFDQQD-TNVDVFKE-V 129 (403)
T ss_dssp HCSEEEEEEECCCCTTTSCS----CCTTEEECCCBTTT--TBEEEEEEECSSSCEEEEEEESEEECTTC-CHHHHHHH-H
T ss_pred CCCeEEEEEeCCCCCccccc----CCCeeEEeeccCCC--CceEEEEecCCCCcCceEEEcCEEECCCC-chHHHHHH-H
Confidence 58999999999998763111 12233332211100 1112222 122233457899999999986 88999986 6
Q ss_pred cchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc-----CCceEEEEEEEEecceeeeccCC
Q 005960 104 NPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-----TGSTAEISYYEVYMDRCYDLLEV 178 (667)
Q Consensus 104 ~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~-----~~~~v~vS~~EIYnE~v~DLL~~ 178 (667)
.|+|+++++|||+||||||||||||||||+|+ ++|||||++++||+.++. ..+.|.+||+|||||+|+|||.+
T Consensus 130 ~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~ 207 (403)
T 4etp_A 130 GQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRS 207 (403)
T ss_dssp HHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC
T ss_pred HHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCC
Confidence 79999999999999999999999999999996 459999999999997653 35789999999999999999986
Q ss_pred CC---------CceeeeeCC-CCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCC
Q 005960 179 KT---------KEISILDDK-DGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGD 248 (667)
Q Consensus 179 ~~---------~~l~i~ed~-~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~ 248 (667)
.. ..+.+++++ .++++|.|++++.|.+++|++.+|..|..+|++++|.+|..|||||+||+|+|.+....
T Consensus 208 ~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~ 287 (403)
T 4etp_A 208 DNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAK 287 (403)
T ss_dssp --------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETT
T ss_pred ccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecC
Confidence 53 235566554 57799999999999999999999999999999999999999999999999999887653
Q ss_pred CCCceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCCC---CCCCCCchhhhhhhcccCCCc
Q 005960 249 DSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKP---RVPYRESKLTRILQDSLGGTS 325 (667)
Q Consensus 249 ~~~~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~---~IPYRdSkLTrLLqdsLgGns 325 (667)
. +....|+|+|||||||||..++++.|.|++|+.+||+||++||+||.||+++.. ||||||||||+||||+||||+
T Consensus 288 ~-~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGns 366 (403)
T 4etp_A 288 T-GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDS 366 (403)
T ss_dssp T-CCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTC
T ss_pred C-CCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCc
Confidence 3 345679999999999999999999999999999999999999999999987654 999999999999999999999
Q ss_pred cceEEEEeCCC--ChhhhHHHHHHHHHhhhcccc
Q 005960 326 HALMVACLNPG--EYQESVHTVSLAARSRHISNT 357 (667)
Q Consensus 326 kt~mIa~vsP~--~~~ETlsTL~fA~rar~I~N~ 357 (667)
+|+||+||||+ +++||++||+||+|++.|+..
T Consensus 367 kt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~ 400 (403)
T 4etp_A 367 KTLMFVNISPSSSHINETLNSLRFASKVNSTRLV 400 (403)
T ss_dssp EEEEEEEECCSGGGHHHHHHHHHHHHHHCCC---
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccC
Confidence 99999999998 699999999999999999874
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=1.2e-78 Score=650.11 Aligned_cols=313 Identities=26% Similarity=0.442 Sum_probs=239.3
Q ss_pred CCCCCCCCCCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCc
Q 005960 15 KSTIPNSTSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDES 94 (667)
Q Consensus 15 ~~~~~~~~~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~s 94 (667)
++..+|+....++|||+|||||+++.|... ...++.+.+... ...+.+. .+.|.||+||++++ +
T Consensus 11 ~~~r~m~~~~~~~VrV~vRvRP~~~~e~~~----~~~~v~~~~~~~-----~~~~~~~------~~~F~FD~Vf~~~~-s 74 (344)
T 3dc4_A 11 KRRRGMEGAKLSAVRIAVREAPYRQFLGRR----EPSVVQFPPWSD-----GKSLIVD------QNEFHFDHAFPATI-S 74 (344)
T ss_dssp --------CCCSEEEEEEEECCCC-----------CCSEECCSSSC-----SSEEEET------TEEEECSEEECTTC-C
T ss_pred cccCCCCCCCCCCeEEEEECCCCCcccccC----CceEEEecCCCC-----CceEEec------CcEEEcceEECCCC-C
Confidence 346678889999999999999998876321 233444433111 1122221 35799999999985 8
Q ss_pred hhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCC------CCCCChHHHHHHHHhhhcc------CCceEEE
Q 005960 95 VSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSE------ERPGLMPLAMSKILSICQS------TGSTAEI 162 (667)
Q Consensus 95 Q~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~------~~~GLipral~~LF~~~~~------~~~~v~v 162 (667)
|++||+.+++|+|+.+++|||+||||||||||||||||+|+. +++|||||++++||+.++. ..+.|++
T Consensus 75 Q~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~v 154 (344)
T 3dc4_A 75 QDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYA 154 (344)
T ss_dssp HHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEE
T ss_pred HHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEE
Confidence 899999999999999999999999999999999999999874 5689999999999998743 2478999
Q ss_pred EEEEEecceeeeccCCCCCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEE
Q 005960 163 SYYEVYMDRCYDLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISV 242 (667)
Q Consensus 163 S~~EIYnE~v~DLL~~~~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v 242 (667)
||+|||||+|+|||.+......+ ...+.|++++.|.+++|++++|..|.++|++++|.||..|||||+||+|+|
T Consensus 155 S~~EIYnE~i~DLL~~~~~~~~~------~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v 228 (344)
T 3dc4_A 155 SFIEIYNEKPFDLLGSTPHMPMV------AARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHV 228 (344)
T ss_dssp EEEEEESSCEEETTSSCTTSBCC------SSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEE
T ss_pred EEEEEeCCeeEEccCCCCCCccc------cccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEE
Confidence 99999999999999876542211 123458999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcccC
Q 005960 243 STLLGDDSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLG 322 (667)
Q Consensus 243 ~~~~~~~~~~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqdsLg 322 (667)
.+. ...|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+.++.|||||||||||||||+||
T Consensus 229 ~~~-------~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLg 301 (344)
T 3dc4_A 229 KSK-------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLT 301 (344)
T ss_dssp ECS-------SCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSS
T ss_pred Eec-------CcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhC
Confidence 642 2479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceEEEEeCCC--ChhhhHHHHHHHHHhhhccc
Q 005960 323 GTSHALMVACLNPG--EYQESVHTVSLAARSRHISN 356 (667)
Q Consensus 323 Gnskt~mIa~vsP~--~~~ETlsTL~fA~rar~I~N 356 (667)
||++|+||+||||+ +++|||+||+||+||++..-
T Consensus 302 Gnskt~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~ 337 (344)
T 3dc4_A 302 AQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAAL 337 (344)
T ss_dssp TTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEEeCCchhhHHHHHHHHHHHHHHhhcCC
Confidence 99999999999997 69999999999999997654
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=1.6e-73 Score=665.29 Aligned_cols=323 Identities=32% Similarity=0.480 Sum_probs=248.9
Q ss_pred CCCCeEEEEEcC----CCCChhhhhhcCCCceEEEEcCCCCc--ccCcceEEEecCCCCCCceeeeeceeeCCCCCchhH
Q 005960 24 TSSKVRVIVRVR----PFLSQEIAAKNGNSICCISVLDRGSL--SCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSK 97 (667)
Q Consensus 24 ~~~~VkV~vRvR----P~~~~E~~~~~~~~~~~i~v~~~~~~--~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~sQ~~ 97 (667)
...++||||||| |.+..|...++ ..+.+..+..+ ....++++..........+.|.||+||++++ +|++
T Consensus 372 il~~~rV~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~-~q~~ 446 (715)
T 4h1g_A 372 LKGNIRVFCRIRNVSSSSSSSSSSSSE----DIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQ-SNDL 446 (715)
T ss_dssp SSCSEEEEEEECCCC-----------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSC-CHHH
T ss_pred HHhcCeEEEEEeccccccccccccccc----cceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCC-CHHH
Confidence 357899999999 55555543331 12333333332 2233455555555555678999999999985 8899
Q ss_pred HHHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc-----CCceEEEEEEEEeccee
Q 005960 98 IFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-----TGSTAEISYYEVYMDRC 172 (667)
Q Consensus 98 Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~-----~~~~v~vS~~EIYnE~v 172 (667)
||+. +.|+|+++++|||+||||||||||||||||+|. ++|||||++++||+.++. ..+.|++||+|||||+|
T Consensus 447 v~~~-~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i 523 (715)
T 4h1g_A 447 VFEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAI 523 (715)
T ss_dssp HGGG-THHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEE
T ss_pred HHHH-HHHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEE
Confidence 9985 679999999999999999999999999999994 579999999999997753 34689999999999999
Q ss_pred eeccCCCC---Cceeeee-CCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCC
Q 005960 173 YDLLEVKT---KEISILD-DKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGD 248 (667)
Q Consensus 173 ~DLL~~~~---~~l~i~e-d~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~ 248 (667)
+|||++.. ..+.+++ +..|+++|.||+++.|.|.+|++++|..|.++|++++|.+|..|||||+||+|+|.+....
T Consensus 524 ~DLl~~~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~ 603 (715)
T 4h1g_A 524 VDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSL 603 (715)
T ss_dssp EESSSCCCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEETT
T ss_pred EECCCCCCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecC
Confidence 99998653 3455554 5567799999999999999999999999999999999999999999999999999887653
Q ss_pred CCCceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhcc-CCCCCCCCCchhhhhhhcccCCCccc
Q 005960 249 DSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNN-NKPRVPYRESKLTRILQDSLGGTSHA 327 (667)
Q Consensus 249 ~~~~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~-~~~~IPYRdSkLTrLLqdsLgGnskt 327 (667)
. .....|+|+|||||||||..++++.|.|++|+..||+||++|++||.+|+. +..|||||||||||||||+|||||+|
T Consensus 604 ~-~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t 682 (715)
T 4h1g_A 604 T-KESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKT 682 (715)
T ss_dssp T-CCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEE
T ss_pred C-CCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceE
Confidence 3 345679999999999999999999999999999999999999999999975 45899999999999999999999999
Q ss_pred eEEEEeCCC--ChhhhHHHHHHHHHhhhcc
Q 005960 328 LMVACLNPG--EYQESVHTVSLAARSRHIS 355 (667)
Q Consensus 328 ~mIa~vsP~--~~~ETlsTL~fA~rar~I~ 355 (667)
+|||||||+ +++||++||+||+|||+|+
T Consensus 683 ~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 683 LMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp EEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred EEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 999999997 6899999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.93 E-value=6.7e-27 Score=206.99 Aligned_cols=81 Identities=44% Similarity=0.667 Sum_probs=75.3
Q ss_pred hhhhhcHHHHHHHHHHhccC-CCCCCCCCchhhhhhhcccCCCccceEEEEeCCC--ChhhhHHHHHHHHHhhhcccccc
Q 005960 283 AKINQSLFALSNVIHALNNN-KPRVPYRESKLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSLAARSRHISNTLP 359 (667)
Q Consensus 283 ~~INkSL~aL~~vI~aL~~~-~~~IPYRdSkLTrLLqdsLgGnskt~mIa~vsP~--~~~ETlsTL~fA~rar~I~N~~~ 359 (667)
.+||+||++||+||.+|.++ ..||||||||||+||||+||||++|+||+||+|+ +++||++||+||+|++.|+|.+.
T Consensus 2 ~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~ 81 (100)
T 2kin_B 2 KNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVS 81 (100)
T ss_dssp CBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEEC
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcce
Confidence 57999999999999999987 5899999999999999999999999999999997 68999999999999999999766
Q ss_pred cccc
Q 005960 360 SAQK 363 (667)
Q Consensus 360 ~~~~ 363 (667)
.|..
T Consensus 82 ~n~~ 85 (100)
T 2kin_B 82 VNLE 85 (100)
T ss_dssp CEEE
T ss_pred eccC
Confidence 6544
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.90 E-value=1.4e-24 Score=197.97 Aligned_cols=80 Identities=44% Similarity=0.679 Sum_probs=74.5
Q ss_pred hhcHHHHHHHHHHhccCC-CCCCCCCchhhhhhhcccCCCccceEEEEeCCC--ChhhhHHHHHHHHHhhhccccccccc
Q 005960 286 NQSLFALSNVIHALNNNK-PRVPYRESKLTRILQDSLGGTSHALMVACLNPG--EYQESVHTVSLAARSRHISNTLPSAQ 362 (667)
Q Consensus 286 NkSL~aL~~vI~aL~~~~-~~IPYRdSkLTrLLqdsLgGnskt~mIa~vsP~--~~~ETlsTL~fA~rar~I~N~~~~~~ 362 (667)
|+||++||+||.+|+++. .||||||||||+||||+||||++|+||+||+|+ +++||++||+||+||+.|+|.+..|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 899999999999999875 699999999999999999999999999999998 68999999999999999999887776
Q ss_pred ccC
Q 005960 363 KVQ 365 (667)
Q Consensus 363 ~~~ 365 (667)
...
T Consensus 81 ~~~ 83 (117)
T 3kin_B 81 ELT 83 (117)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1e-22 Score=208.62 Aligned_cols=256 Identities=10% Similarity=0.078 Sum_probs=171.0
Q ss_pred CCCeEEEEEcCCCC-ChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCchh--HHHHh
Q 005960 25 SSKVRVIVRVRPFL-SQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVS--KIFYS 101 (667)
Q Consensus 25 ~~~VkV~vRvRP~~-~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~sQ~--~Vf~~ 101 (667)
+|+|||+|||||.. +. .+.+...+. . +.+.. ..+.|.||+||+++. .|+ +||+
T Consensus 23 KGnIRVFcrvrp~~~p~---------~~~v~y~~~-------~--I~v~~----~~k~f~FDRVf~p~s-~Qe~~~vf~- 78 (298)
T 2o0a_A 23 KGTMRCYAYVMEQNLPE---------NLLFDYENG-------V--ITQGL----SEHVYKFNRVIPHLK-VSEDKFFTQ- 78 (298)
T ss_dssp HTCCEEEEEECGGGSCT---------TEEEETTTT-------E--EEETT----TCCEEECSEEEETTT-SCHHHHHHH-
T ss_pred hCceEEEEEeccccCCc---------cceeecCcc-------c--eeecC----CCceEEeeeEECccc-cccHHHHHH-
Confidence 58999999999954 31 111322221 1 22222 126899999999986 667 8887
Q ss_pred hccchhhhhcC-CCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc---CCceEEEEEEEEe-cceeeecc
Q 005960 102 EVNPLIPGIFH-GRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS---TGSTAEISYYEVY-MDRCYDLL 176 (667)
Q Consensus 102 ~v~plV~~vl~-G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~---~~~~v~vS~~EIY-nE~v~DLL 176 (667)
.+.++|+.+++ |||+||||||||||||| ||++..+|..... ..+.+.++|+||| ||.++|||
T Consensus 79 E~~~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~~~Y~~tlq~veLy~Ne~~~DLL 145 (298)
T 2o0a_A 79 EYSVYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDML 145 (298)
T ss_dssp TTHHHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHHHHEEEEEEEEEEECC-CEEETT
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcccceEEEEEEEEEecCCchHHhc
Confidence 49999999999 99999999999999999 9999999987754 7889999999999 99999999
Q ss_pred CCC--CCceeeeeCCCCCeEeeCcEEeecCC-hHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCC--CCC
Q 005960 177 EVK--TKEISILDDKDGQLHLKGLSRVPVNS-MTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGD--DSK 251 (667)
Q Consensus 177 ~~~--~~~l~i~ed~~g~~~v~gls~v~V~S-~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~--~~~ 251 (667)
..+ .....|+.+.+|...+.|++.+.|.+ .+|+..++..+.. +..|+ +.-.|+.+.+.....+ +..
T Consensus 146 ~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~------~~~~~---~gi~i~k~~~~~~~~~~~~~~ 216 (298)
T 2o0a_A 146 LDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEH------PNLPH---SGMGIIKVQFFPRDSKSDGNN 216 (298)
T ss_dssp SCCC------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC------
T ss_pred CCCCCCCcceEEecCCCCEEecccEEEEccccHHHHHHHhhcccc------cccCC---CCceEEEEEEecCcccccccC
Confidence 633 23567777888999999999999999 8998887732221 11222 3455666666552111 111
Q ss_pred ceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcccCCCccceEEE
Q 005960 252 AALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVA 331 (667)
Q Consensus 252 ~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqdsLgGnskt~mIa 331 (667)
....--+.|+.+.-.. +...|.+ ++..+ -+-.|+++-+||--|- ..+.+++.
T Consensus 217 ~~~~~d~yf~e~~~~~--------------------~~~~l~~---~~~~~----~~~~spi~~il~~ll~-~tks~~~~ 268 (298)
T 2o0a_A 217 DPVPVDFYFIELNNLK--------------------SIEQFDK---SIFKK----ESCETPIALVLKKLIS-DTKSFFLL 268 (298)
T ss_dssp -CCCEEEEEEEECSHH--------------------HHHHHHH---HHHTC-----CCCSHHHHHHHHHHH-HSBCEEEE
T ss_pred CCCceEEEEEEeCCHH--------------------HHHHHHh---hcccc----cccCCcHHHHHHHHHh-cCcceEEE
Confidence 1123347787774211 1223333 22222 3456888988887554 56788999
Q ss_pred EeCCCChhhhHHHHHHHHHhhhccc
Q 005960 332 CLNPGEYQESVHTVSLAARSRHISN 356 (667)
Q Consensus 332 ~vsP~~~~ETlsTL~fA~rar~I~N 356 (667)
++.-+. +.-.-|..+.+...+.|
T Consensus 269 ~l~~~~--~~~~lL~~s~~i~~~~~ 291 (298)
T 2o0a_A 269 NLNDSK--NVNKLLTISEEVQTQLC 291 (298)
T ss_dssp EECCGG--GHHHHHHHHHHHHHHTC
T ss_pred EecCCC--chhHHHHHHHHhhcccC
Confidence 998642 22237888888888887
No 32
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=99.35 E-value=8.3e-13 Score=116.14 Aligned_cols=60 Identities=23% Similarity=0.261 Sum_probs=55.6
Q ss_pred ccccccCcccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhccccc
Q 005960 585 QEYIDFLNTASREELVELKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKAAK 647 (667)
Q Consensus 585 ~~~~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~~~ 647 (667)
...+||||||+.++|+.|||||+++|++||+++ ||++++||.+| |||++.+++|+..+..
T Consensus 14 ~~~~vdiNtAs~~eL~~lpGIG~~~A~~IV~~G---pF~s~edL~~V~Gig~~~~e~l~~~l~~ 74 (97)
T 3arc_U 14 YGEKIDLNNTNIAAFIQYRGLYPTLAKLIVKNA---PYESVEDVLNIPGLTERQKQILRENLEH 74 (97)
T ss_dssp GGTSEETTTSCGGGGGGSTTCTTHHHHHHHHHC---CCSSGGGGGGCTTCCHHHHHHHHHTGGG
T ss_pred cCCceeCCcCCHHHHhHCCCCCHHHHHHHHHcC---CCCCHHHHHhccCCCHHHHHHHHHHhce
Confidence 356899999999999999999999999999966 99999999999 9999999999987653
No 33
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=99.29 E-value=2.1e-12 Score=118.72 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=51.8
Q ss_pred cccccCcccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHH---HHHHhccccc
Q 005960 586 EYIDFLNTASREELVELKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQ---VYNLFGKAAK 647 (667)
Q Consensus 586 ~~~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~---~~~l~~~~~~ 647 (667)
..+||||+|+.+||++||||||++|++||++. ||+++|||.+| |||+++ +++.++++++
T Consensus 52 ~~kIniNtA~~~eL~~LpGiGp~~A~~II~~G---pF~svedL~~V~GIg~k~~e~l~~~~~~~tv 114 (134)
T 1s5l_U 52 GEKIDLNNTNIAAFIQYRGLYPTLAKLIVKNA---PYESVEDVLNIPGLTERQKQILRENLEHFTV 114 (134)
T ss_dssp TTSEETTTSCGGGGGGSTTCTHHHHHHHHHTC---CCSSGGGGGGCTTCCHHHHHHHHHHHTTEEC
T ss_pred CCeeeCcccCHHHHHHCCCCCHHHHHHHHHcC---CCCCHHHHHhCCCCCHHHHHHHHHhhcceee
Confidence 46899999999999999999999999999433 99999999999 999975 5555777775
No 34
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=99.23 E-value=9.4e-12 Score=104.31 Aligned_cols=58 Identities=38% Similarity=0.399 Sum_probs=55.4
Q ss_pred cccccCcccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhcccc
Q 005960 586 EYIDFLNTASREELVELKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKAA 646 (667)
Q Consensus 586 ~~~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 646 (667)
..++|||+|+.++|..|||||+++|++|+++| +|.+++||.+| |||++.+++|+..++
T Consensus 16 ~~~idiN~a~~~~L~~ipGIG~~~A~~Il~~r---~~~s~~eL~~v~Gig~k~~~~i~~~l~ 74 (75)
T 2duy_A 16 QTPVSLNEASLEELMALPGIGPVLARRIVEGR---PYARVEDLLKVKGIGPATLERLRPYLR 74 (75)
T ss_dssp GCSEETTTCCHHHHTTSTTCCHHHHHHHHHTC---CCSSGGGGGGSTTCCHHHHHHHGGGEE
T ss_pred cCccChhhCCHHHHHhCCCCCHHHHHHHHHHc---ccCCHHHHHhCCCCCHHHHHHHHHhcc
Confidence 56899999999999999999999999999999 99999999999 999999999998875
No 35
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=99.04 E-value=8.8e-11 Score=103.54 Aligned_cols=61 Identities=31% Similarity=0.542 Sum_probs=56.8
Q ss_pred ccccccCcccCHHHHhcCCCCCHHHHHHHHHHHhcC-CCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 585 QEYIDFLNTASREELVELKGIGQRLADYICELRQSS-PVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 585 ~~~~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~-pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
...+++||+|+.++|..|||||+++|++|+++|+.+ +|.+++||.+| ||+++.+++|...-
T Consensus 28 ~~~~i~iN~a~~~~L~~ipGIG~~~A~~Il~~r~~~g~f~s~edL~~v~Gig~k~~~~l~~~g 90 (98)
T 2edu_A 28 QKILDLLNEGSARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVEGITGKQMESFLKAN 90 (98)
T ss_dssp HHHHHHHHHSCHHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHHHHHH
T ss_pred hccCeehhhCCHHHHHHCCCCCHHHHHHHHHHHHhcCCcCCHHHHHhCCCCCHHHHHHHHHCc
Confidence 456899999999999999999999999999999986 99999999999 99999999997753
No 36
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=99.01 E-value=1e-10 Score=114.25 Aligned_cols=60 Identities=23% Similarity=0.465 Sum_probs=52.3
Q ss_pred ccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhh-c-C-------CCHHHHHHHhccc-cccccCC
Q 005960 593 TASREELVELKGIGQRLADYICELRQSSPVKSLSDLEK-I-G-------LSTKQVYNLFGKA-AKGIFDR 652 (667)
Q Consensus 593 tA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~-v-G-------i~~~~~~~l~~~~-~~~~~~~ 652 (667)
||+.++|+.|||||+++|++||+||++.||++++||.+ | | ||.+.+++|++.- .--+|-.
T Consensus 128 TA~~~eL~~LpGIG~k~A~~IIeyRe~G~F~s~eDL~~RV~GIg~~~~~Ig~r~le~lk~~~~KY~lFv~ 197 (205)
T 2i5h_A 128 TTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKGIQRPEKLIVSRIIYEIKNPQTKYKLFTA 197 (205)
T ss_dssp CSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHSTTCCCHHHHHHHHHHHHHHCTTSSCCSSCC
T ss_pred cCCHHHHhcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHhcCCCCcchhHHHHHHHHHhhCCCcceEEEee
Confidence 99999999999999999999999999999999999976 9 9 8888999987654 3344543
No 37
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.69 E-value=1e-08 Score=119.62 Aligned_cols=64 Identities=23% Similarity=0.232 Sum_probs=60.7
Q ss_pred ccccccCcccCHHHHhcCCCCCHHHHHHHHHHHhcC-CCCCHHHHhhc-CCCHHHHHHHhcccccc
Q 005960 585 QEYIDFLNTASREELVELKGIGQRLADYICELRQSS-PVKSLSDLEKI-GLSTKQVYNLFGKAAKG 648 (667)
Q Consensus 585 ~~~~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~-pf~~~~dL~~v-Gi~~~~~~~l~~~~~~~ 648 (667)
....||||||+.++|+.|||||+.+|++||+||+++ ||++.+||.+| |||++.+++++..+.+.
T Consensus 496 n~~gVdiNtAs~~~L~~v~GiG~~~A~~Iv~yR~~~G~f~sr~~L~~V~giG~k~~ekl~~FL~i~ 561 (785)
T 3bzc_A 496 NAVGVDVNTASAALLARISGLNSTLAQNIVAHRDANGAFRTRDELKKVSRLGEKTFEQAAGFLRVM 561 (785)
T ss_dssp HHHCEETTTCCHHHHHTSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHHGGGEECT
T ss_pred cccccccCcCCHHHHhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHHhcCCCCHHHHHHhhheEEEC
Confidence 456799999999999999999999999999999998 99999999999 99999999999999864
No 38
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.21 E-value=4.4e-07 Score=108.59 Aligned_cols=64 Identities=19% Similarity=0.051 Sum_probs=59.0
Q ss_pred ccccccCccc-----CHHHHhcCCCCCHHHHHHHHHHH-hcC-CCCCHHHHhhc-CCCHHHHHHHhcccccc
Q 005960 585 QEYIDFLNTA-----SREELVELKGIGQRLADYICELR-QSS-PVKSLSDLEKI-GLSTKQVYNLFGKAAKG 648 (667)
Q Consensus 585 ~~~~v~iNtA-----~~~eL~~lpGIG~~~A~~Ii~~R-~~~-pf~~~~dL~~v-Gi~~~~~~~l~~~~~~~ 648 (667)
...-|||||| +...|+.|+|||+++|++||+|| +.+ +|++.+||.+| |||++.+++..+.+.+.
T Consensus 700 N~vGVdiNtA~~~~~s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v~~iG~k~fe~~agflrI~ 771 (1030)
T 3psf_A 700 NLVSVEVNKATDNNYYASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITHNILHKTIFMNSAGFLYIS 771 (1030)
T ss_dssp HHHCEEHHHHHTCHHHHTTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHHHHTTSSCHHHHHHHTTTEECC
T ss_pred cccCccHHHhhcCcCCHHHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHhcCCccHHHHHhccCeEEEc
Confidence 3556999999 89999999999999999999999 556 99999999999 99999999999998764
No 39
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.13 E-value=8.8e-07 Score=107.57 Aligned_cols=64 Identities=19% Similarity=0.051 Sum_probs=58.8
Q ss_pred ccccccCccc-----CHHHHhcCCCCCHHHHHHHHHHH-hcC-CCCCHHHHhhc-CCCHHHHHHHhcccccc
Q 005960 585 QEYIDFLNTA-----SREELVELKGIGQRLADYICELR-QSS-PVKSLSDLEKI-GLSTKQVYNLFGKAAKG 648 (667)
Q Consensus 585 ~~~~v~iNtA-----~~~eL~~lpGIG~~~A~~Ii~~R-~~~-pf~~~~dL~~v-Gi~~~~~~~l~~~~~~~ 648 (667)
...-|||||| +...|+.|+|||+++|++||+|| +.+ +|++.+||.+| |||++.+++..+.+...
T Consensus 697 N~vGVdiNtA~~~~~s~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~~v~~iG~k~fe~~agflrI~ 768 (1219)
T 3psi_A 697 NLVSVEVNKATDNNYYASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLITHNILHKTIFMNSAGFLYIS 768 (1219)
T ss_dssp HHHCEEHHHHTTCHHHHTTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHHHTTCSCHHHHHHHGGGEECC
T ss_pred hccCccHHHhhcCcCCHHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHhhCCCccHHHHHhccccEEEc
Confidence 4567999999 79999999999999999999999 556 99999999999 99999999999998764
No 40
>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6
Probab=97.70 E-value=1.1e-05 Score=84.65 Aligned_cols=62 Identities=11% Similarity=0.010 Sum_probs=47.3
Q ss_pred ccccCcccC---HHHHhcC--CCCCHHHHHHHHHHHhcCCCCCHHHHhh---c-CCCHHHHHHHhcccccc
Q 005960 587 YIDFLNTAS---REELVEL--KGIGQRLADYICELRQSSPVKSLSDLEK---I-GLSTKQVYNLFGKAAKG 648 (667)
Q Consensus 587 ~~v~iNtA~---~~eL~~l--pGIG~~~A~~Ii~~R~~~pf~~~~dL~~---v-Gi~~~~~~~l~~~~~~~ 648 (667)
.+||||||+ .+.|..| ||||+..|++||++|...+|.+++||.+ + |++.+...+++..+.+.
T Consensus 186 ~~iNiNTa~~~~a~vL~al~~~~i~~~~A~~ii~~R~~~gf~~v~~~~~~~~~~g~~~~~~~~~~~~l~v~ 256 (298)
T 3ci0_K 186 QQININTLDVTQSVILEALFDPWLSPVQARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQLKTVLSVD 256 (298)
T ss_dssp CCEETTTCCGGGTHHHHHHTC-------CCHHHHTCCTTCCSCHHHHHTSGGGSSSCHHHHHHHHHHEESC
T ss_pred cceeccccChhhHHHHHHhcCCCCCHHHHHHHHHhcccCCCCCHHHHHhhhcccCCChhhhhhccCeEEEe
Confidence 479999997 4568888 9999999999999999779999999987 7 99999888887777653
No 41
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=97.35 E-value=0.00014 Score=77.43 Aligned_cols=54 Identities=28% Similarity=0.457 Sum_probs=48.3
Q ss_pred CcccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHH----------hhc-CCCHHHHHHHhcc
Q 005960 591 LNTASREELVELKGIGQRLADYICELRQSSPVKSLSDL----------EKI-GLSTKQVYNLFGK 644 (667)
Q Consensus 591 iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL----------~~v-Gi~~~~~~~l~~~ 644 (667)
-.-++.++|..|||||+++|++|.++++...|..+++| .+| |||++++.+|.++
T Consensus 51 ~~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~l~~~~p~l~ll~~v~GiG~k~a~~l~~~ 115 (335)
T 2bcq_A 51 KPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQ 115 (335)
T ss_dssp SCCCCHHHHHTSTTCCHHHHHHHHHHHHSSSCGGGGGCCTTHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred ccccCHHHHhcCCCccHHHHHHHHHHHHcCCchHHHHHhhhhHHHHHHhcCCCcCHHHHHHHHHc
Confidence 34567788999999999999999999997699999998 699 9999999999765
No 42
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=96.92 E-value=0.00048 Score=73.25 Aligned_cols=53 Identities=21% Similarity=0.372 Sum_probs=46.1
Q ss_pred cccCHHHHhcCCCCCHHHHHHHHHHHhcCC------------CCCHHHHhhc-CCCHHHHHHHhcc
Q 005960 592 NTASREELVELKGIGQRLADYICELRQSSP------------VKSLSDLEKI-GLSTKQVYNLFGK 644 (667)
Q Consensus 592 NtA~~~eL~~lpGIG~~~A~~Ii~~R~~~p------------f~~~~dL~~v-Gi~~~~~~~l~~~ 644 (667)
.-++.++|..|||||+++|++|.++++... +..+.+|.+| |||++++.+|.++
T Consensus 52 ~i~~~~~l~~LpGIG~~~A~kI~E~l~tG~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 52 KIKSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVDE 117 (335)
T ss_dssp CCCCHHHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred cccCHHHHhcCCCCcHHHHHHHHHHHHhCCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHHc
Confidence 356778899999999999999999987654 5678889999 9999999999776
No 43
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=96.75 E-value=0.00036 Score=60.08 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=50.6
Q ss_pred ccccccCcccCHHHHhcCCCCCHHHHHHHHHHHhcC---CCCCHHHHhhc-CCCHHHHHHHhcccc
Q 005960 585 QEYIDFLNTASREELVELKGIGQRLADYICELRQSS---PVKSLSDLEKI-GLSTKQVYNLFGKAA 646 (667)
Q Consensus 585 ~~~~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~---pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 646 (667)
.....+.|.+....|..+||||++.|++|+++-... --.+.++|.++ |||++..++|...+.
T Consensus 20 ~~~~~~~~~~~~~~L~~IpgIG~~~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 20 EKLEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHh
Confidence 345677788888999999999999999999875311 34578899999 999999999987764
No 44
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=96.74 E-value=0.00047 Score=59.03 Aligned_cols=63 Identities=17% Similarity=0.125 Sum_probs=49.9
Q ss_pred ccccCcccCHHHHhcCCCCCHHHHHHHHHHHhcC---CCCCHHHHhhc-CCCHHHHHHHhccccccc
Q 005960 587 YIDFLNTASREELVELKGIGQRLADYICELRQSS---PVKSLSDLEKI-GLSTKQVYNLFGKAAKGI 649 (667)
Q Consensus 587 ~~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~---pf~~~~dL~~v-Gi~~~~~~~l~~~~~~~~ 649 (667)
...+.|.+....|..+||||++.|++|+++-... --.+.++|.++ |||++..++|...+....
T Consensus 9 ~~~~~~~~~~~~L~~IpgIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~~~ 75 (89)
T 1z00_A 9 LEQDFVSRVTECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHEPF 75 (89)
T ss_dssp HHHHHHHHHHHHHTTSSSCCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHSCS
T ss_pred ccccHHHHHHHHHHcCCCCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 3456788889999999999999999999864211 23467889999 999999999988775433
No 45
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=96.72 E-value=0.00093 Score=71.74 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=46.0
Q ss_pred cccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHh------------hc-CCCHHHHHHHhcc
Q 005960 592 NTASREELVELKGIGQRLADYICELRQSSPVKSLSDLE------------KI-GLSTKQVYNLFGK 644 (667)
Q Consensus 592 NtA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~------------~v-Gi~~~~~~~l~~~ 644 (667)
.-++.++|..|||||+++|++|.++++...|..+++|. +| |||++++.+|.++
T Consensus 56 ~i~~~~~l~~lpGIG~~~A~kI~E~l~tG~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 56 PVASLSQLHGLPYFGEHSTRVIQELLEHGTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp CCCSGGGGTTCTTCCHHHHHHHHHHHHHSCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred ccCCHHHHhcCCCCCHHHHHHHHHHHHcCChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHHc
Confidence 45566689999999999999999999977888888664 68 9999999999776
No 46
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=96.71 E-value=0.00025 Score=72.08 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=0.0
Q ss_pred cccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHh--------hc-CCCHHHHHHHhcccc
Q 005960 592 NTASREELVELKGIGQRLADYICELRQSSPVKSLSDLE--------KI-GLSTKQVYNLFGKAA 646 (667)
Q Consensus 592 NtA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~--------~v-Gi~~~~~~~l~~~~~ 646 (667)
+||+..+|..|||||+++|.+|+++ +|.++++|. +| |||+++.++|...+.
T Consensus 10 ~~a~~~~L~~IpGIGpk~a~~Ll~~----gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~ 69 (241)
T 1vq8_Y 10 AEEEYTELTDISGVGPSKAESLREA----GFESVEDVRGADQSALADVSGIGNALAARIKADVG 69 (241)
T ss_dssp ----------------------------------------------------------------
T ss_pred cccchhHHhcCCCCCHHHHHHHHHc----CCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHH
Confidence 3888899999999999999999986 788887776 88 999999999988774
No 47
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=96.47 E-value=0.00054 Score=57.23 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=40.4
Q ss_pred cccCcccCHHHHhcCCCCCHHHHHHHHHHHhcC---CCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 588 IDFLNTASREELVELKGIGQRLADYICELRQSS---PVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 588 ~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~---pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
.++.|.+....|..+||||+++|++|+++-... --.+.++|.+| |||++..+.|...+
T Consensus 15 ~~~~~~~~~~~L~~I~gIG~~~A~~Ll~~fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 15 VPRGSHMNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp --------CCGGGGCTTCSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHH
T ss_pred HHhHHHHHHHHHhcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHH
Confidence 467778888889999999999999999874210 12367889999 99999999987653
No 48
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=96.20 E-value=0.0018 Score=63.59 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=41.1
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhcC------CCCCHHHHhhc-CCCHHHHHHHhcccc
Q 005960 597 EELVELKGIGQRLADYICELRQSS------PVKSLSDLEKI-GLSTKQVYNLFGKAA 646 (667)
Q Consensus 597 ~eL~~lpGIG~~~A~~Ii~~R~~~------pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 646 (667)
..|..+||||||+|.+|+.+.... --.++++|.+| |||+++.++|...+.
T Consensus 72 ~~L~~v~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~~lk 128 (191)
T 1ixr_A 72 ELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALELK 128 (191)
T ss_dssp HHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHhcCCCcCHHHHHHHHHhCChHHHHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHH
Confidence 468899999999999999997542 23688999999 999999998865443
No 49
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=96.17 E-value=0.0034 Score=51.34 Aligned_cols=52 Identities=19% Similarity=0.152 Sum_probs=40.9
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcC---CCCCHHHHhhc-CCCHHHHHHHhccccc
Q 005960 596 REELVELKGIGQRLADYICELRQSS---PVKSLSDLEKI-GLSTKQVYNLFGKAAK 647 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~~~---pf~~~~dL~~v-Gi~~~~~~~l~~~~~~ 647 (667)
...|..+||||+++|++|+++-... --.+.++|.+| |||++.+..|...+..
T Consensus 13 ~~~L~~i~giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~ 68 (75)
T 1x2i_A 13 RLIVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVITA 68 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHcCCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 4568899999999999999964211 22467888999 9999999999876643
No 50
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=95.98 E-value=0.0028 Score=63.06 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=41.3
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhcC------CCCCHHHHhhc-CCCHHHHHHHhcccccc
Q 005960 597 EELVELKGIGQRLADYICELRQSS------PVKSLSDLEKI-GLSTKQVYNLFGKAAKG 648 (667)
Q Consensus 597 ~eL~~lpGIG~~~A~~Ii~~R~~~------pf~~~~dL~~v-Gi~~~~~~~l~~~~~~~ 648 (667)
..|..++|||||+|.+|+...... --.+.+.|.+| |||+|+.++|..-+...
T Consensus 88 ~~L~sv~GIGpk~A~~Ils~~~~~~l~~aI~~~d~~~L~~vpGIG~KtA~rIi~elk~k 146 (212)
T 2ztd_A 88 LTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDK 146 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHHTTT
T ss_pred HHhcCcCCcCHHHHHHHHHhCCHHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 347789999999999999987543 24588999999 99999998876544433
No 51
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=95.95 E-value=0.0045 Score=66.91 Aligned_cols=53 Identities=11% Similarity=0.188 Sum_probs=44.9
Q ss_pred cccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHh------------hc-CCCHHHHHHHhcc
Q 005960 592 NTASREELVELKGIGQRLADYICELRQSSPVKSLSDLE------------KI-GLSTKQVYNLFGK 644 (667)
Q Consensus 592 NtA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~------------~v-Gi~~~~~~~l~~~ 644 (667)
.-++.++|..|||||+++|++|.++.+...+..+++|. +| |||++++.+|-++
T Consensus 75 ~i~~~~~l~~lpGIG~~ia~kI~E~l~tG~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 75 PITSMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp CCCSGGGGTTCSSCCHHHHHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cccCHHHHhcCCCCcHHHHHHHHHHHHcCCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHHHc
Confidence 34556679999999999999999999977787777665 68 9999999998765
No 52
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=95.63 E-value=0.0067 Score=60.00 Aligned_cols=47 Identities=26% Similarity=0.364 Sum_probs=39.1
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhcC------CCCCHHHHhhc-CCCHHHHHHHhc
Q 005960 597 EELVELKGIGQRLADYICELRQSS------PVKSLSDLEKI-GLSTKQVYNLFG 643 (667)
Q Consensus 597 ~eL~~lpGIG~~~A~~Ii~~R~~~------pf~~~~dL~~v-Gi~~~~~~~l~~ 643 (667)
..|..++|||||+|.+|+.+.... --.++++|.+| |||+|+.++|..
T Consensus 73 ~~L~~V~GIGpk~A~~iL~~f~~~~l~~aI~~~d~~~L~~vpGIG~K~A~rI~~ 126 (203)
T 1cuk_A 73 KELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIV 126 (203)
T ss_dssp HHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHhcCCCcCHHHHHHHHhhCChHHHHHHHHhCCHHHHhhCCCCCHHHHHHHHH
Confidence 358889999999999999987542 34688999999 999999888753
No 53
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=95.44 E-value=0.006 Score=49.05 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=34.1
Q ss_pred CHHHHhcCCCCCHHHHHHHHHHHhcC---CCCCHHHHhhcCCCHHH-HHHHhcccc
Q 005960 595 SREELVELKGIGQRLADYICELRQSS---PVKSLSDLEKIGLSTKQ-VYNLFGKAA 646 (667)
Q Consensus 595 ~~~eL~~lpGIG~~~A~~Ii~~R~~~---pf~~~~dL~~vGi~~~~-~~~l~~~~~ 646 (667)
..+.|..|||||++++++++++=... .=.+++||.+| ||.+. .++|.+.+.
T Consensus 2 ~~s~L~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~v-ig~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 2 PQDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSI-LGNAANAKQLYDFIH 56 (63)
T ss_dssp CCHHHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHH-HSCHHHHHHHHHHHH
T ss_pred HHhHHHcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHH-cCchHHHHHHHHHHh
Confidence 35689999999999999999752110 22455666666 44555 666666554
No 54
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=95.43 E-value=0.0093 Score=67.81 Aligned_cols=47 Identities=17% Similarity=0.364 Sum_probs=41.6
Q ss_pred ccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhh---------c-CCCHHHHHHHhc
Q 005960 593 TASREELVELKGIGQRLADYICELRQSSPVKSLSDLEK---------I-GLSTKQVYNLFG 643 (667)
Q Consensus 593 tA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~---------v-Gi~~~~~~~l~~ 643 (667)
.+...+|..|||||+++|.+|+.. +|++++||.+ + |||+|+.++|..
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~~----G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~ 149 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWLA----GIDSLERLREAAESGELAGLKGFGAKSAATILE 149 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHT----TCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHc----CCCCHHHHHHHHhhCccccCCCCCHHHHHHHHH
Confidence 556788999999999999999973 9999999987 8 999999999843
No 55
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=94.62 E-value=0.02 Score=48.79 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=37.3
Q ss_pred cCcccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCH--------HHHhhcCCCHHH-HHHHhccc
Q 005960 590 FLNTASREELVELKGIGQRLADYICELRQSSPVKSL--------SDLEKIGLSTKQ-VYNLFGKA 645 (667)
Q Consensus 590 ~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~--------~dL~~vGi~~~~-~~~l~~~~ 645 (667)
..|.+....|..|||||++.+++++.+ |.++ +||.+| ||.+. .++|...+
T Consensus 11 ~~N~~~~s~L~~IpGIG~kr~~~LL~~-----FgSl~~i~~AS~eEL~~v-ig~~~~A~~I~~~l 69 (84)
T 1z00_B 11 KYNPGPQDFLLKMPGVNAKNCRSLMHH-----VKNIAELAALSQDELTSI-LGNAANAKQLYDFI 69 (84)
T ss_dssp TSCHHHHHHHHTCSSCCHHHHHHHHHH-----SSCHHHHHHSCHHHHHHH-HSCHHHHHHHHHHH
T ss_pred cccccHHHHHHhCCCCCHHHHHHHHHH-----cCCHHHHHHCCHHHHHHH-hCchHHHHHHHHHH
Confidence 579999999999999999999999975 6555 555565 44445 55555544
No 56
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=94.02 E-value=0.054 Score=65.16 Aligned_cols=60 Identities=22% Similarity=0.211 Sum_probs=50.0
Q ss_pred ccccCcccCHHH-----------HhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhcccc
Q 005960 587 YIDFLNTASREE-----------LVELKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKAA 646 (667)
Q Consensus 587 ~~v~iNtA~~~e-----------L~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 646 (667)
.+++||.-.... |..|+|||+..|++||+.|++.||+|++||.+- +++.+.++.|...=+
T Consensus 946 lppDIn~S~~~~f~v~~~~Ir~gL~aIkGlG~~~a~~Iv~aR~~gpF~s~~Df~~R~~v~k~~lE~Li~aGA 1017 (1041)
T 3f2b_A 946 KNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVRAREEGEFLSKEDLQQRGKLSKTLLEYLESRGC 1017 (1041)
T ss_dssp CCCCTTTCCSSCCEEETTEEECCGGGSTTCCHHHHHHHHHHHHTSCCCSHHHHHHHHTCCHHHHHHHHHTTT
T ss_pred CcceEEecCCcceEEECCEEEEchHhhCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 368899665221 678999999999999999997799999999885 999999999876543
No 57
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=93.93 E-value=0.052 Score=53.72 Aligned_cols=50 Identities=26% Similarity=0.258 Sum_probs=41.5
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcC---CCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 596 REELVELKGIGQRLADYICELRQSS---PVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~~~---pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
...|..|||||++.|++|+++-... --.+.++|.++ |||++..++|...+
T Consensus 161 ~~~L~~i~gVg~~~a~~Ll~~fgs~~~l~~a~~e~L~~v~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 161 LYILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKIL 214 (219)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 4568899999999999999986532 23678899999 99999999998765
No 58
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=92.85 E-value=0.019 Score=57.58 Aligned_cols=52 Identities=12% Similarity=0.259 Sum_probs=0.0
Q ss_pred cCHHHHhcCCCCCHHHHHHHHHHHhcC-CC--CCHHHHhhcCCCHHHHHHHhccc
Q 005960 594 ASREELVELKGIGQRLADYICELRQSS-PV--KSLSDLEKIGLSTKQVYNLFGKA 645 (667)
Q Consensus 594 A~~~eL~~lpGIG~~~A~~Ii~~R~~~-pf--~~~~dL~~vGi~~~~~~~l~~~~ 645 (667)
+....|..|||||+++|++++++-... .+ .+++||.+||||++..+.|.+.+
T Consensus 170 ~~~s~L~~IpGIG~k~ak~Ll~~FGSl~~i~~As~eeL~~VGIG~~~A~~I~~~f 224 (226)
T 3c65_A 170 MFHSVLDDIPGVGEKRKKALLNYFGSVKKMKEATVEELQRANIPRAVAEKIYEKL 224 (226)
T ss_dssp -------------------------------------------------------
T ss_pred cccccccccCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHHcCCCHHHHHHHHHHh
Confidence 445679999999999999999986533 33 37788888899999988887643
No 59
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=91.43 E-value=0.17 Score=57.44 Aligned_cols=46 Identities=24% Similarity=0.399 Sum_probs=37.9
Q ss_pred CHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHH---------hhc-CCCHHHHHHHhc
Q 005960 595 SREELVELKGIGQRLADYICELRQSSPVKSLSDL---------EKI-GLSTKQVYNLFG 643 (667)
Q Consensus 595 ~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL---------~~v-Gi~~~~~~~l~~ 643 (667)
...+|..++||||++|.+|+... .+.+++|| .++ |||+|+.++|..
T Consensus 91 ~~~~l~~v~GvGpk~A~~~~~~l---g~~~~~~l~~a~~~~~l~~~~GiG~k~a~~i~~ 146 (575)
T 3b0x_A 91 GVLEVMEVPGVGPKTARLLYEGL---GIDSLEKLKAALDRGDLTRLKGFGPKRAERIRE 146 (575)
T ss_dssp HHHHHHTSTTTCHHHHHHHHHTS---CCCSHHHHHHHHHHTGGGGSTTCCHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHhc---CCCCHHHHHHHHHcCCcccCCCCCccHHHHHHH
Confidence 35789999999999999999975 67777766 457 999999988743
No 60
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.80 E-value=0.053 Score=51.01 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=33.7
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceec
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
++||.+.... ..|++++. .+..+++++-......++-||++|+|||+.+.
T Consensus 7 ~~f~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 7 ANLDTYHPKN-VSQNRALL-TIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp CCSSSCCCCS-HHHHHHHH-HHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CccccccCCC-HHHHHHHH-HHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 6788766543 35566664 45666665543334567889999999999763
No 61
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=90.30 E-value=0.31 Score=58.16 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=47.4
Q ss_pred cccccCcccCH----H-------HHhcCCCCCHHHHHHHHHHHhcCC-CCCHHHHhh-cC---CCHHHHHHHhcc
Q 005960 586 EYIDFLNTASR----E-------ELVELKGIGQRLADYICELRQSSP-VKSLSDLEK-IG---LSTKQVYNLFGK 644 (667)
Q Consensus 586 ~~~v~iNtA~~----~-------eL~~lpGIG~~~A~~Ii~~R~~~p-f~~~~dL~~-vG---i~~~~~~~l~~~ 644 (667)
..+.+||.-.. + =|..|+|||+..|++||+.|+..| |+|++||.+ ++ ++.+.++.|..-
T Consensus 811 vlppdin~S~~~f~~~~~~~Ir~gl~~Ikgvg~~~~~~Iv~~R~~g~~f~s~~Df~~R~~~~~~~~~~le~Li~a 885 (910)
T 2hnh_A 811 ILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMS 885 (910)
T ss_dssp EECCCTTTCBSSCEECTTSCEECBGGGSTTCCHHHHHHHHHHHHTTCCCSSHHHHTTSSCSSSSCHHHHHHHHHT
T ss_pred ECCcceeecCCCeEEecCCeeehhHHhcCCCCHHHHHHHHHHHhcCCCCCCHHHHHHhccccCCCHHHHHHHHHC
Confidence 34678885432 2 477899999999999999999558 999999976 44 899999988763
No 62
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=89.84 E-value=0.17 Score=42.93 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=31.2
Q ss_pred ccCcccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHH
Q 005960 589 DFLNTASREELVELKGIGQRLADYICELRQSSPVKSLSDL 628 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL 628 (667)
-.|-.|+.++|..+||||+++|+.|+++-+. ||....++
T Consensus 43 ~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~-~~~~~~~~ 81 (89)
T 1z00_A 43 EQLIAASREDLALCPGLGPQKARRLFDVLHE-PFLKVPGG 81 (89)
T ss_dssp HHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS-CSSSCSSS
T ss_pred HHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH-HhccchhH
Confidence 3455789999999999999999999998753 66655544
No 63
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=89.19 E-value=0.27 Score=60.07 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=46.3
Q ss_pred cccccCcccCHH----------HHhcCCCCCHHHHHHHHHHHhcC-CCCCHHHHhh-cC---CCHHHHHHHhc
Q 005960 586 EYIDFLNTASRE----------ELVELKGIGQRLADYICELRQSS-PVKSLSDLEK-IG---LSTKQVYNLFG 643 (667)
Q Consensus 586 ~~~v~iNtA~~~----------eL~~lpGIG~~~A~~Ii~~R~~~-pf~~~~dL~~-vG---i~~~~~~~l~~ 643 (667)
..+.+||.-..+ =|..|+|||+..|++||+.|++. ||+|++||.+ ++ ++.+.++.|..
T Consensus 868 vlppdIN~S~~~f~v~~~~Ir~GL~aIkgvg~~~~~~Iv~~R~~~g~f~sl~Df~~Rv~~~~~nk~~le~Li~ 940 (1220)
T 2hpi_A 868 VLPPDVNRSGFDFKVVGEEILFGLSAVKNVGEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVK 940 (1220)
T ss_dssp EECCCTTTCCSSCEEETTEEECCSTTSSSCCHHHHHHHHHHHHHSCSCCSHHHHHHHSCTTTSCHHHHHHHHH
T ss_pred eCCCceeecCCccEEeCCeeeehhhhcCCCCHHHHHHHHHHHHhcCCCCCHHHHHHhccccCCCHHHHHHHHh
Confidence 346788854432 25678999999999999999976 9999999966 53 88888888765
No 64
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=88.89 E-value=0.36 Score=39.46 Aligned_cols=53 Identities=28% Similarity=0.402 Sum_probs=39.5
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHH--------Hhhc-CCCHHHHHHHhccccc-cccCC
Q 005960 596 REELVELKGIGQRLADYICELRQSSPVKSLSD--------LEKI-GLSTKQVYNLFGKAAK-GIFDR 652 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~d--------L~~v-Gi~~~~~~~l~~~~~~-~~~~~ 652 (667)
.++|..|||||+.+|.+..+. +|.+++| |..+ ||+....++|...... +-|.+
T Consensus 6 ~~~l~~L~Gi~~~~~~kL~e~----Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~~~w~~~ 68 (70)
T 1wcn_A 6 ADDLLNLEGVDRDLAFKLAAR----GVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICWFGD 68 (70)
T ss_dssp CHHHHSSTTCCHHHHHHHHTT----TCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHHHHTTCT
T ss_pred hhHHHHcCCCCHHHHHHHHHc----CCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHHccCccc
Confidence 357999999999999765443 6766655 5567 8999999998876655 66643
No 65
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=88.89 E-value=0.32 Score=39.28 Aligned_cols=31 Identities=32% Similarity=0.474 Sum_probs=26.8
Q ss_pred ccCcccCHHHHhcCCCCCHHHHHHHHHHHhc
Q 005960 589 DFLNTASREELVELKGIGQRLADYICELRQS 619 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~ 619 (667)
-.|-.|+.++|..+||||+++|+.|+++.+.
T Consensus 38 ~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~~ 68 (75)
T 1x2i_A 38 ERVFTASVAELMKVEGIGEKIAKEIRRVITA 68 (75)
T ss_dssp HHHHHCCHHHHTTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHhCCHHHHhcCCCCCHHHHHHHHHHHhC
Confidence 3456789999999999999999999998753
No 66
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=88.72 E-value=0.2 Score=48.96 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=26.6
Q ss_pred cCcccCHHHHhcCCCCCHHHHHHHHHHH-hcC-CC---------CCHHHHhh----cCCCHHHHHHHhccc
Q 005960 590 FLNTASREELVELKGIGQRLADYICELR-QSS-PV---------KSLSDLEK----IGLSTKQVYNLFGKA 645 (667)
Q Consensus 590 ~iNtA~~~eL~~lpGIG~~~A~~Ii~~R-~~~-pf---------~~~~dL~~----vGi~~~~~~~l~~~~ 645 (667)
.|-.++.++|..+||||+|+|++|+.+= ++. ++ ...+|... +|.+++.+.+...++
T Consensus 100 aI~~~d~~~L~~vpGIG~K~A~rI~~~lk~k~~~~~~~~~~~~~~~~~ea~~AL~~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 100 ALLEGDARLLTSASGVGRRLAERIALELKGKVPPHLLAGEKVESEAAEEAVMALAALGFKEAQARAVVLDL 170 (191)
T ss_dssp HHHTTCHHHHTTSTTCCHHHHHHHHHHHTTTSCSCC-----------------------------------
T ss_pred HHHhCCHHHHHhCCCCCHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4778999999999999999999998644 332 31 11233322 277777777666655
No 67
>3ci0_K Pseudopilin GSPK; general secretory pathway, pseudopilus, type 4 pilin biogene methylation, protein transport; 2.20A {Escherichia coli} SCOP: a.60.16.1 a.60.16.1 d.24.1.6
Probab=88.27 E-value=0.54 Score=48.86 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=48.0
Q ss_pred cccccCcccC-------------HHHHhcCCCCC----HHHHHHHHHHHh-------------------------cC-CC
Q 005960 586 EYIDFLNTAS-------------REELVELKGIG----QRLADYICELRQ-------------------------SS-PV 622 (667)
Q Consensus 586 ~~~v~iNtA~-------------~~eL~~lpGIG----~~~A~~Ii~~R~-------------------------~~-pf 622 (667)
..++|||.+. ..-|...-|+. +.+|++|++++. .+ ||
T Consensus 75 ~~~fNLN~L~~~~~~~~~~~~~~~~~Ll~~lg~~~~~a~~la~~i~dw~D~d~~~~~~~GaE~~~Y~~~~~~y~~~n~~~ 154 (298)
T 3ci0_K 75 QACFNLNALAQPTTASRPLAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRLGREDSEYLARSVPFYAANQPL 154 (298)
T ss_dssp TSSEEGGGGGSCCCSSSCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHSSSSSCCSSSCCCHHHHHTSSSCBCCCCSCC
T ss_pred CCceehhhcccccCCcChHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCCccCCCCccccchhhcCCCCCCCCCCC
Confidence 3567888651 23444445887 567888888773 24 79
Q ss_pred CCHHHHhhc-CCCHHHHHHHhccccc
Q 005960 623 KSLSDLEKI-GLSTKQVYNLFGKAAK 647 (667)
Q Consensus 623 ~~~~dL~~v-Gi~~~~~~~l~~~~~~ 647 (667)
.+++||..| |++++.+.+|+..+++
T Consensus 155 ~~~~EL~~v~G~~~~~~~~l~p~vtv 180 (298)
T 3ci0_K 155 ADISEMRVVQGMDAGLYQKLKPLVCA 180 (298)
T ss_dssp SSGGGGGGSTTCCHHHHHHHTTTEEC
T ss_pred CCHHHHHhccCCCHHHHHhhcCeEEE
Confidence 999999999 9999999999999987
No 68
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=88.21 E-value=0.22 Score=49.05 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=39.7
Q ss_pred cCcccCHHHHhcCCCCCHHHHHHHHHH-HhcC-CCC--------C--------------HHHHhh----cCCCHHHHHHH
Q 005960 590 FLNTASREELVELKGIGQRLADYICEL-RQSS-PVK--------S--------------LSDLEK----IGLSTKQVYNL 641 (667)
Q Consensus 590 ~iNtA~~~eL~~lpGIG~~~A~~Ii~~-R~~~-pf~--------~--------------~~dL~~----vGi~~~~~~~l 641 (667)
.|-.++.++|..+||||+|+|++|+.+ +.+- +|. . .+|... +|.+++.+++.
T Consensus 101 aI~~~d~~~L~~vpGIG~K~A~rI~~elk~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~AL~~LGy~~~ea~~a 180 (203)
T 1cuk_A 101 AVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVARLVALGYKPQEASRM 180 (203)
T ss_dssp HHHTTCHHHHHTSTTCCHHHHHHHHHHHHHHGGGCCSTTTCC-------------CCHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHhCCHHHHhhCCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccHHHHHHHHHHcCCCHHHHHHH
Confidence 577899999999999999999999854 4433 331 0 123322 38888888887
Q ss_pred hccc
Q 005960 642 FGKA 645 (667)
Q Consensus 642 ~~~~ 645 (667)
..++
T Consensus 181 v~~~ 184 (203)
T 1cuk_A 181 VSKI 184 (203)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 7766
No 69
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.91 E-value=0.14 Score=48.86 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=31.9
Q ss_pred eeeeceeeCCCCCchhHHHHhhccchhhhhcCCCC-EEEEeeccCCCCCccee
Q 005960 81 CYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRN-ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 81 ~F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G~N-~tIfaYGqTGSGKTyTm 132 (667)
.++||.+..... .+..++. .+..++...-.+.. ..|+-||++|+|||+.+
T Consensus 21 ~~~f~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 21 RASLSDVDLNDD-GRIKAIR-FAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CCCTTSSCCSSH-HHHHHHH-HHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred cCCHhhccCCCh-hHHHHHH-HHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 367877665432 4455655 34455554433322 67889999999999975
No 70
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=87.56 E-value=0.28 Score=40.48 Aligned_cols=28 Identities=39% Similarity=0.384 Sum_probs=24.6
Q ss_pred ccCcccCHHHHhcCCCCCHHHHHHHHHH
Q 005960 589 DFLNTASREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
-.|-.|+.++|..+||||+++|+.|+++
T Consensus 48 ~~l~~a~~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 48 QGLRNASVEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp HHHHHCCHHHHTTSSSTTSHHHHHHHHH
T ss_pred HHHHHCCHHHHHHCCCCCHHHHHHHHHH
Confidence 3456789999999999999999999876
No 71
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=86.84 E-value=0.52 Score=50.49 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=40.4
Q ss_pred CHHHHhcCCCCCHHHHHHHHHHHhcC---CCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 595 SREELVELKGIGQRLADYICELRQSS---PVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 595 ~~~eL~~lpGIG~~~A~~Ii~~R~~~---pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
.+.-|..||+||++.|++++++=..- ==.+++||.+| |||++....|++-+
T Consensus 313 GyRiLs~IPrl~~~iae~Lv~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~IregL 367 (377)
T 3c1y_A 313 GYRLLKTVARIPLSIGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAISESI 367 (377)
T ss_dssp SHHHHHHTSCCCHHHHHHHHHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCHHHHHHHHHHhCCHHHHHhCCHHHHHhccCccHHHHHHHHHHH
Confidence 34478999999999999999874322 23577899999 99999999888754
No 72
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=86.83 E-value=0.29 Score=51.80 Aligned_cols=34 Identities=32% Similarity=0.456 Sum_probs=29.3
Q ss_pred ccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhh
Q 005960 593 TASREELVELKGIGQRLADYICELRQSSPVKSLSDLEK 630 (667)
Q Consensus 593 tA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~ 630 (667)
-.+..+|..|||||+++|+++. .+ ++++++||.+
T Consensus 94 ~~~l~~l~~V~GiGpk~a~~l~--~~--Gi~tledL~~ 127 (335)
T 2fmp_A 94 SSSINFLTRVSGIGPSAARKFV--DE--GIKTLEDLRK 127 (335)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHH--HT--TCCSHHHHHT
T ss_pred hhHHHHHhCCCCCCHHHHHHHH--Hc--CCCCHHHHHH
Confidence 3567889999999999999993 33 9999999987
No 73
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=86.23 E-value=0.28 Score=41.76 Aligned_cols=34 Identities=29% Similarity=0.428 Sum_probs=28.2
Q ss_pred ccCcccCHHHHhcCCCCCHHHHHHHHHHHhcCCCC
Q 005960 589 DFLNTASREELVELKGIGQRLADYICELRQSSPVK 623 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~ 623 (667)
.+|-.|+.++|..+||||+++|++|+++-. .||.
T Consensus 56 ~~l~~as~~eL~~i~GIG~~~a~~I~~~l~-~~~~ 89 (91)
T 2a1j_B 56 EQLIAASREDLALCPGLGPQKARRLFDVLH-EPFL 89 (91)
T ss_dssp HHHHSCCHHHHHTSSSCCSHHHHHHHHHHH-SCSC
T ss_pred HHHHhCCHHHHHhCCCCCHHHHHHHHHHHh-hhhc
Confidence 456689999999999999999999998863 3554
No 74
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=85.96 E-value=0.3 Score=43.80 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=29.9
Q ss_pred cccCcccCHHHHhcCCCCCHHHHHHHHHHHhcC---CCCCHHHHhh
Q 005960 588 IDFLNTASREELVELKGIGQRLADYICELRQSS---PVKSLSDLEK 630 (667)
Q Consensus 588 ~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~---pf~~~~dL~~ 630 (667)
.-.|..|+.++|..++|||+..|++|++...+. .|.+-.|+.+
T Consensus 49 ve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl~~~gF~ta~e~~~ 94 (114)
T 1b22_A 49 VEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQ 94 (114)
T ss_dssp GGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHHSCCC---------
T ss_pred HHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHHcccCCCcHHHHHH
Confidence 457789999999999999999999999988754 5888877754
No 75
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.64 E-value=0.22 Score=51.73 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=31.9
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceec
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
++||.+.... ..+..++. .+..+++..-.+....|+-||++|+||||.+.
T Consensus 121 ~tfd~f~~~~-~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 121 IHLSDIDVNN-ASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCGGGSCCCS-HHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred CCHhhCcCCC-hHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 5677655432 13344554 44555555444445678889999999999864
No 76
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.32 E-value=0.41 Score=43.93 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=20.8
Q ss_pred chhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 105 PLIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 105 plV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.+++.+..+....++-||++|+|||+.+
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 3444444466677899999999999976
No 77
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=82.23 E-value=0.64 Score=46.10 Aligned_cols=56 Identities=25% Similarity=0.349 Sum_probs=40.1
Q ss_pred cCcccCHHHHhcCCCCCHHHHHHHH-HHHhcC-CC----------C-CHHHHhh----cCCCHHHHHHHhccc
Q 005960 590 FLNTASREELVELKGIGQRLADYIC-ELRQSS-PV----------K-SLSDLEK----IGLSTKQVYNLFGKA 645 (667)
Q Consensus 590 ~iNtA~~~eL~~lpGIG~~~A~~Ii-~~R~~~-pf----------~-~~~dL~~----vGi~~~~~~~l~~~~ 645 (667)
.|-..+.+.|..+||||+|+|++|+ +++++. ++ . ..+|... +|.+++.+++...++
T Consensus 116 aI~~~d~~~L~~vpGIG~KtA~rIi~elk~kl~~~~~~~~~~~~~~~~~~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 116 VLADGNVAALTRVPGIGKRGAERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp HHHTTCHHHHHTSTTCCHHHHHHHHHHHTTTCC-------------CCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhCCHHHHhhCCCCCHHHHHHHHHHHHHhhccccccccccccCcccHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3667899999999999999999999 555544 22 1 2344433 388888888877766
No 78
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=81.88 E-value=0.93 Score=48.78 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=26.9
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhh
Q 005960 596 REELVELKGIGQRLADYICELRQSSPVKSLSDLEK 630 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~ 630 (667)
..+|..|||||+++|+++. ++ ++++++||.+
T Consensus 120 l~~l~~I~GvGpk~a~~ly--~~--Gi~tledL~~ 150 (381)
T 1jms_A 120 FKLFTSVFGVGLKTAEKWF--RM--GFRTLSKIQS 150 (381)
T ss_dssp HHHHHTSTTCCHHHHHHHH--HT--TCCSHHHHHH
T ss_pred HHHHHccCCCCHHHHHHHH--Hc--CCCcHHHHHh
Confidence 4678899999999999994 43 8999999985
No 79
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=81.77 E-value=1.6 Score=46.59 Aligned_cols=33 Identities=15% Similarity=0.366 Sum_probs=27.6
Q ss_pred CHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhc
Q 005960 595 SREELVELKGIGQRLADYICELRQSSPVKSLSDLEKI 631 (667)
Q Consensus 595 ~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~v 631 (667)
...+|..|||||+++|+++ |++ ++++++||..-
T Consensus 100 ~l~~l~~I~GvG~kta~~l--~~~--Gi~tledL~~~ 132 (360)
T 2ihm_A 100 TMKLFTQVFGVGVKTANRW--YQE--GLRTLDELREQ 132 (360)
T ss_dssp HHHHHHTSTTCCHHHHHHH--HHT--TCCSHHHHHTC
T ss_pred HHHHHhCCCCCCHHHHHHH--HHc--CCCCHHHHHhc
Confidence 3567889999999999999 443 89999999853
No 80
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=80.46 E-value=1.1 Score=48.33 Aligned_cols=50 Identities=20% Similarity=0.327 Sum_probs=38.3
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcC---CCCCHHHHhhc-CCCHHHHHHHhcccc
Q 005960 596 REELVELKGIGQRLADYICELRQSS---PVKSLSDLEKI-GLSTKQVYNLFGKAA 646 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~~~---pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 646 (667)
...|..||||||++|++++++=-.. --.+.+|| .+ |||.+++.+|++--+
T Consensus 467 eamLtAIaGIGp~tAeRLLEkFGSVe~Vm~AteDEL-RedGIGekqarrI~gl~~ 520 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKKYGGYSKVREAGVEEL-REDGLTDAQIRELKGLKT 520 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTSHHHHHHSCHHHH-HHTTCCHHHHHHHHTCHH
T ss_pred eeeeeccCCCCHHHHHHHHHHhcCHHHHHhCCHHHH-HHccccHHHHHHHhhHHH
Confidence 5779999999999999999863211 12567788 55 999999999887543
No 81
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=79.90 E-value=0.74 Score=37.56 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.9
Q ss_pred cccCHHHHhcCCCCCHHHHHHHHHH
Q 005960 592 NTASREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 592 NtA~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
--++.+||..+||||++++++|..|
T Consensus 48 ~~~s~~eL~~v~Gig~k~~~~i~~~ 72 (75)
T 2duy_A 48 PYARVEDLLKVKGIGPATLERLRPY 72 (75)
T ss_dssp CCSSGGGGGGSTTCCHHHHHHHGGG
T ss_pred ccCCHHHHHhCCCCCHHHHHHHHHh
Confidence 4589999999999999999998654
No 82
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=79.65 E-value=0.84 Score=45.06 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=32.3
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHHhccccccccCCC
Q 005960 597 EELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFGKAAKGIFDRP 653 (667)
Q Consensus 597 ~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~~~~~~~~~~~~ 653 (667)
++|..|||||+|.|+++.=+=-+.+=...+.|.+. | ....++++..-.++-|++.
T Consensus 26 ~~l~~LPGIG~KsA~RlA~hLL~~~~~~~~~La~a-l-~~~~~~i~~C~~C~nlte~ 80 (212)
T 3vdp_A 26 EELSKLPGIGPKTAQRLAFFIINMPLDEVRSLSQA-I-IEAKEKLRYCKICFNITDK 80 (212)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHTTSCHHHHHHHHHH-H-HHHHHHCEECTTTCCEESS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHcCCHHHHHHHHHH-H-HHHHHhCCcCCCCCCCCCC
Confidence 68999999999999999877633332223333221 1 1233444444455666653
No 83
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=79.42 E-value=0.9 Score=45.25 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=33.2
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhc---CCCCCHHHHhhcCCCH-HHHHHHhc
Q 005960 596 REELVELKGIGQRLADYICELRQS---SPVKSLSDLEKIGLST-KQVYNLFG 643 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~~---~pf~~~~dL~~vGi~~-~~~~~l~~ 643 (667)
...|..|||||++.|++++++=.. .-=.+++||.+| ||+ +..+.|.+
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~FgSl~~i~~As~EeL~~V-IG~~~~A~~I~~ 217 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEHFGSLENIRSASLEEIARV-IGSTEIARRVLD 217 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHCSHHHHHTSCHHHHHHH-HTCHHHHHHHHH
T ss_pred cccccCCCCcCHHHHHHHHHHcCCHHHHHhCCHHHHHHH-hChHHHHHHHHH
Confidence 467899999999999999986210 012356777777 777 77766654
No 84
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=79.24 E-value=0.47 Score=43.54 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=20.7
Q ss_pred chhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 105 PLIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 105 plV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.+++.+..+....++-||++|+|||+.+
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 3444444466667899999999999965
No 85
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=79.16 E-value=1.3 Score=46.73 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=26.4
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhc
Q 005960 596 REELVELKGIGQRLADYICELRQSSPVKSLSDLEKI 631 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~v 631 (667)
.+.|..|||||+++|+++.+ + ++++++||.+-
T Consensus 95 l~ll~~v~GiG~k~a~~l~~--~--Gi~tledL~~a 126 (335)
T 2bcq_A 95 LELFSNIWGAGTKTAQMWYQ--Q--GFRSLEDIRSQ 126 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHH--T--TCCSHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHH--c--CCCCHHHHHHH
Confidence 34567999999999999943 2 99999999774
No 86
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=77.81 E-value=0.92 Score=39.16 Aligned_cols=44 Identities=25% Similarity=0.422 Sum_probs=32.3
Q ss_pred CHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHHhc
Q 005960 595 SREELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFG 643 (667)
Q Consensus 595 ~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~~ 643 (667)
+..+|..||+||+++++...+. ++.+++||..+| +...+.+|+.
T Consensus 2 ~~~~L~~LPNiG~~~e~~L~~v----GI~s~e~L~~~G-a~~ay~rL~~ 45 (93)
T 3bqs_A 2 SLANLSELPNIGKVLEQDLIKA----GIKTPVELKDVG-SKEAFLRIWE 45 (93)
T ss_dssp CCSCGGGSTTCCHHHHHHHHHT----TCCSHHHHHHHH-HHHHHHHHHT
T ss_pred ChHHhhcCCCCCHHHHHHHHHc----CCCCHHHHHhCC-HHHHHHHHHH
Confidence 4568999999999999876443 899999998875 2244445543
No 87
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=77.39 E-value=0.91 Score=46.49 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=22.9
Q ss_pred HHHHhhccchhhhhcC--CCC--EEEEeeccCCCCCccee
Q 005960 97 KIFYSEVNPLIPGIFH--GRN--ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 97 ~Vf~~~v~plV~~vl~--G~N--~tIfaYGqTGSGKTyTm 132 (667)
.+.+..+..++...+. |.. ..|+-||++|+|||+..
T Consensus 14 ~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 14 AFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp HHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3445555555555443 222 36788999999999854
No 88
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=76.98 E-value=1.1 Score=44.58 Aligned_cols=54 Identities=20% Similarity=0.162 Sum_probs=32.3
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHHhccccccccCC
Q 005960 597 EELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFGKAAKGIFDR 652 (667)
Q Consensus 597 ~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~~~~~~~~~~~ 652 (667)
++|..|||||+|.|+++.=+=-+.+=.....|.+. | ....++++..-.++-|++
T Consensus 12 ~~l~~LPGIG~KSA~RlA~hLL~~~~~~~~~La~a-l-~~~~~~i~~C~~C~nlte 65 (228)
T 1vdd_A 12 RELSRLPGIGPKSAQRLAFHLFEQPREDIERLASA-L-LEAKRDLHVCPICFNITD 65 (228)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHSSSCHHHHHHHHHH-H-HHHHHHCEECSSSCCEES
T ss_pred HHHhHCCCCCHHHHHHHHHHHHcCCHHHHHHHHHH-H-HHHHhcCeEcCCCCCCcC
Confidence 68999999999999999877633332223333221 1 123344555555666654
No 89
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=76.94 E-value=0.54 Score=48.99 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=30.6
Q ss_pred eeeeceeeCCCCCchhHHHHhhccchhhhhcCCCC--EEEEeeccCCCCCccee
Q 005960 81 CYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRN--ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 81 ~F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G~N--~tIfaYGqTGSGKTyTm 132 (667)
.+.||.+++.+. .. ..+..+++.+..|.. ..++-||++|+|||+..
T Consensus 40 ~~~~~~ivG~~~-----~~-~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVGQLA-----AR-RAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEESCHH-----HH-HHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccChHH-----HH-HHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 467898888642 11 223344555555554 37889999999999875
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=75.96 E-value=1.6 Score=40.10 Aligned_cols=42 Identities=29% Similarity=0.677 Sum_probs=25.1
Q ss_pred eeeeceeeCCCCCchhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceec
Q 005960 81 CYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 81 ~F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
.|.||..+.. .+ .+.+. .+..+ .|. .++-||++|+|||+.+.
T Consensus 13 ~~~~~~f~~g--~n-~~~~~-~l~~~-----~g~--~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 13 YPSFDKFLGT--EN-AELVY-VLRHK-----HGQ--FIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCCCCCCCSC--CT-HHHHH-HCCCC-----CCS--EEEEESSSTTTTCHHHH
T ss_pred ccchhhcCcC--cc-HHHHH-HHHhc-----CCC--EEEEECCCCCCHHHHHH
Confidence 4666665542 23 23333 33333 443 56679999999999863
No 91
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=75.53 E-value=1.6 Score=43.16 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=22.8
Q ss_pred cCHHHHhcCCCCCHHHHHHHHHHHhcC
Q 005960 594 ASREELVELKGIGQRLADYICELRQSS 620 (667)
Q Consensus 594 A~~~eL~~lpGIG~~~A~~Ii~~R~~~ 620 (667)
...++|..|||||+++|..|+-+=-..
T Consensus 118 ~~~~~L~~lpGIG~kTA~~il~~a~~~ 144 (218)
T 1pu6_A 118 VTREWLLDQKGIGKESADAILCYACAK 144 (218)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHCCC
Confidence 468899999999999999999875433
No 92
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=74.13 E-value=1.7 Score=43.03 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.3
Q ss_pred CHHHHhcCCCCCHHHHHHHHHHHhcC
Q 005960 595 SREELVELKGIGQRLADYICELRQSS 620 (667)
Q Consensus 595 ~~~eL~~lpGIG~~~A~~Ii~~R~~~ 620 (667)
+.++|..|||||++.|..|+-+=-..
T Consensus 107 ~~~~L~~lpGIG~~TA~~il~~a~~~ 132 (225)
T 1kg2_A 107 TFEEVAALPGVGRSTAGAILSLSLGK 132 (225)
T ss_dssp SHHHHHTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHhcCCCCcHHHHHHHHHHhCCC
Confidence 68999999999999999999865434
No 93
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=73.90 E-value=1.6 Score=37.61 Aligned_cols=43 Identities=26% Similarity=0.438 Sum_probs=31.2
Q ss_pred CHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHHh
Q 005960 595 SREELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLF 642 (667)
Q Consensus 595 ~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~ 642 (667)
+..+|..||+||+++++...+. ++.+++||..+| ....+.+|+
T Consensus 2 sm~~L~dLPNig~~~e~~L~~~----GI~t~~~Lr~~G-a~~ay~rLk 44 (93)
T 3mab_A 2 SLANLSELPNIGKVLEQDLIKA----GIKTPVELKDVG-SKEAFLRIW 44 (93)
T ss_dssp -CCCGGGSTTCCHHHHHHHHHT----TCCSHHHHHHHC-HHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHc----CCCCHHHHHhCC-HHHHHHHHH
Confidence 4568999999999999865443 899999999887 223344444
No 94
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=73.62 E-value=1.9 Score=42.74 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.3
Q ss_pred cCHHHHhcCCCCCHHHHHHHHHHH
Q 005960 594 ASREELVELKGIGQRLADYICELR 617 (667)
Q Consensus 594 A~~~eL~~lpGIG~~~A~~Ii~~R 617 (667)
...++|..|||||++.|..|+-+=
T Consensus 112 ~~~~~L~~lpGIG~~TA~~il~~~ 135 (221)
T 1kea_A 112 RNRKAILDLPGVGKYTCAAVMCLA 135 (221)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHh
Confidence 467899999999999999998764
No 95
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=73.04 E-value=2 Score=42.16 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=24.6
Q ss_pred cCcccCHHHHhcCCCCCHHHHHHHHHHH
Q 005960 590 FLNTASREELVELKGIGQRLADYICELR 617 (667)
Q Consensus 590 ~iNtA~~~eL~~lpGIG~~~A~~Ii~~R 617 (667)
.|=.|+.++|..+||||+++|++|.++-
T Consensus 187 ~l~~a~~e~L~~v~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 187 RFFTASKAEISKVEGIGEKRAEEIKKIL 214 (219)
T ss_dssp HHTTCCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHhCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999999875
No 96
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=73.02 E-value=0.96 Score=45.02 Aligned_cols=44 Identities=18% Similarity=0.350 Sum_probs=20.5
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
|+||.+.+.+. ....+. ..+..+.. ....|+-||++|+|||+..
T Consensus 3 ~~f~~~ig~~~-~~~~~~-----~~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 3 EYKDNLLGEAN-SFLEVL-----EQVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp -------CCCH-HHHHHH-----HHHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred cccccceeCCH-HHHHHH-----HHHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 78999887542 212222 22222222 2356788999999999864
No 97
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=72.96 E-value=0.99 Score=46.41 Aligned_cols=49 Identities=27% Similarity=0.442 Sum_probs=29.2
Q ss_pred eeeeceeeCCCCCchhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceec
Q 005960 81 CYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 81 ~F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
.|+||.++.... + ...+. .+..++..-- +....++-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~g~~-~-~~a~~-~~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIVGEG-N-RLAYE-VVKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCCCTT-T-HHHHH-HHHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCCCCc-H-HHHHH-HHHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 488988874322 2 33343 2444444321 123457889999999999763
No 98
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=72.89 E-value=0.72 Score=52.54 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=0.0
Q ss_pred ccCcccCHHHHhcCCCCCHHHHHHHHHHHhcC-CCCCHHHHhhcCCC
Q 005960 589 DFLNTASREELVELKGIGQRLADYICELRQSS-PVKSLSDLEKIGLS 634 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~-pf~~~~dL~~vGi~ 634 (667)
-.|-.|+.++|..+||||+++|+.|+++-... --.-+++|.+.|+.
T Consensus 553 e~L~~As~eeL~~I~GIG~~~A~sI~~ff~~~~n~~~i~~L~~~Gv~ 599 (615)
T 3sgi_A 553 DAIAAASTDQLAAVEGVGPTIAAAVTEWFAVDWHREIVDKWRAAGVR 599 (615)
T ss_dssp -----------------------------------------------
T ss_pred HHHHhCCHHHHhhCCCCCHHHHHHHHHHHcCHHHHHHHHHHHHcCCC
Confidence 45778899999999999999999999987543 44556666665653
No 99
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=72.81 E-value=3.3 Score=46.92 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=41.3
Q ss_pred ccCcccCHHHHhcCCCCCHHHHHHHHHHHhc---CCC--------------------------------CCHHHHhhc-C
Q 005960 589 DFLNTASREELVELKGIGQRLADYICELRQS---SPV--------------------------------KSLSDLEKI-G 632 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~---~pf--------------------------------~~~~dL~~v-G 632 (667)
.+|=+.+.++|..|+|+|+|.|++|++.=++ .|| .+.+||..| |
T Consensus 472 ~Dly~L~~~~L~~l~g~geKsa~nL~~aIe~sk~~~l~r~l~aLGI~~vG~~~a~~La~~f~sl~~l~~a~~e~l~~i~g 551 (586)
T 4glx_A 472 ADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPD 551 (586)
T ss_dssp GGGGTCCHHHHHTSTTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTT
T ss_pred HHHhCCCHHHHhcccCccHHHHHHHHHHHHHHcCCCHHHHHHHcCCCchhHHHHHHHHHHcCCHHHHHccCHHHHhcCCC
Confidence 3455678999999999999999999865332 254 345667777 8
Q ss_pred CCHHHHHHHhccc
Q 005960 633 LSTKQVYNLFGKA 645 (667)
Q Consensus 633 i~~~~~~~l~~~~ 645 (667)
||+...+.|....
T Consensus 552 iG~~~A~si~~ff 564 (586)
T 4glx_A 552 VGIVVASHVHNFF 564 (586)
T ss_dssp CCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 8888777776543
No 100
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=72.59 E-value=0.88 Score=43.66 Aligned_cols=45 Identities=11% Similarity=0.265 Sum_probs=26.0
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+.||.+++.. .+ +.++. .+..++ ..+....|+-||++|+|||+.+
T Consensus 25 ~~~~~~~~~~-~~-~~~~~-~l~~~~---~~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 25 ETFTSYYPAA-GN-DELIG-ALKSAA---SGDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSTTTSCC---CC-HHHHH-HHHHHH---HTCSCSEEEEECSTTSSHHHHH
T ss_pred CChhhccCCC-CC-HHHHH-HHHHHH---hCCCCCeEEEECCCCCCHHHHH
Confidence 5677666522 12 33443 222222 2234567889999999999975
No 101
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=72.44 E-value=0.52 Score=48.59 Aligned_cols=43 Identities=23% Similarity=0.474 Sum_probs=26.9
Q ss_pred eeeeceeeCCCCCchhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 81 CYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 81 ~F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|.||.+++.+. +... +...++.+....|+-||++|+|||+..
T Consensus 20 ~~~f~~i~G~~~-----~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 20 VFPFSAIVGQED-----MKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCGGGSCSCHH-----HHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCchhccChHH-----HHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 488999887532 2221 222223233334899999999999865
No 102
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=72.20 E-value=2 Score=42.06 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.7
Q ss_pred cCHHHHhcCCCCCHHHHHHHHHH
Q 005960 594 ASREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 594 A~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
...++|..|||||++.|..|+-+
T Consensus 114 ~~~~~L~~lpGIG~kTA~~il~~ 136 (207)
T 3fhg_A 114 LARERLLNIKGIGMQEASHFLRN 136 (207)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCHHHHHHHHHH
Confidence 56788999999999999999876
No 103
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=71.52 E-value=2.3 Score=37.98 Aligned_cols=51 Identities=20% Similarity=0.275 Sum_probs=37.9
Q ss_pred CHHHHhcCCCCCHHHHHHHHH--HHh-cC-CCCCHHHHhhc-CCCHHHHHHHhcccc
Q 005960 595 SREELVELKGIGQRLADYICE--LRQ-SS-PVKSLSDLEKI-GLSTKQVYNLFGKAA 646 (667)
Q Consensus 595 ~~~eL~~lpGIG~~~A~~Ii~--~R~-~~-pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 646 (667)
+.++|..+ |||+..++++.+ |.. +. -+.+.++|.++ ||++..+++|.....
T Consensus 24 ~I~~L~~~-GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~ 79 (114)
T 1b22_A 24 PISRLEQC-GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAA 79 (114)
T ss_dssp CHHHHHHT-TCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHH
T ss_pred cHHHHHhc-CCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHH
Confidence 45677766 999999998776 222 11 45556788888 999999999987654
No 104
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=71.51 E-value=0.88 Score=47.72 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=19.7
Q ss_pred hcCCCCEEEEeeccCCCCCccee
Q 005960 110 IFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 110 vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+-.|...+|+-||++|+|||.++
T Consensus 40 i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 40 LMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHTTCCCEEEEECCCSHHHHHHH
T ss_pred hcCCCCCeEEEECCCCCCHHHHH
Confidence 34677889999999999999875
No 105
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=71.39 E-value=1.5 Score=41.47 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=18.7
Q ss_pred CHHHHhcCCCCCHHHHHHHHHH
Q 005960 595 SREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 595 ~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
+.++|..|||||+..|.+|.-+
T Consensus 102 ~~~~L~~LpGVG~yTAdav~~F 123 (161)
T 4e9f_A 102 QWKYPIELHGIGKYGNDSYRIF 123 (161)
T ss_dssp CCSSGGGSTTCCHHHHHHHHHH
T ss_pred ChhhhhcCCCchHHHHHHHHHH
Confidence 5678999999999999987665
No 106
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=71.37 E-value=2.3 Score=41.72 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=22.6
Q ss_pred cCHHHHhcCCCCCHHHHHHHHHHHhcC
Q 005960 594 ASREELVELKGIGQRLADYICELRQSS 620 (667)
Q Consensus 594 A~~~eL~~lpGIG~~~A~~Ii~~R~~~ 620 (667)
...++|..|||||++.|..|+-+=-..
T Consensus 106 ~~~~~L~~l~GIG~~tA~~il~~~~~~ 132 (211)
T 2abk_A 106 EDRAALEALPGVGRKTANVVLNTAFGW 132 (211)
T ss_dssp SCHHHHHHSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHCCC
Confidence 467999999999999999999864333
No 107
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=71.24 E-value=1.4 Score=50.11 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=31.3
Q ss_pred cCcccCHHHHhcCCCCCHHHHHHHHHHHhcC-CCCCHHHHhhcCC
Q 005960 590 FLNTASREELVELKGIGQRLADYICELRQSS-PVKSLSDLEKIGL 633 (667)
Q Consensus 590 ~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~-pf~~~~dL~~vGi 633 (667)
.|-.|+.++|..|+|||+++|+.|+++=..- --.-++.|.+.||
T Consensus 537 ~l~~a~~e~l~~i~giG~~~A~si~~ff~~~~n~~~i~~L~~~Gv 581 (586)
T 4glx_A 537 ALEAASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGV 581 (586)
T ss_dssp HHHHCCHHHHTTSTTCCHHHHHHHHHHHHSHHHHHHHHHHHHTTC
T ss_pred HHHccCHHHHhcCCCccHHHHHHHHHHHcCHHHHHHHHHHHHcCC
Confidence 4557899999999999999999999985321 2233444444444
No 108
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=70.54 E-value=2.4 Score=42.13 Aligned_cols=28 Identities=29% Similarity=0.628 Sum_probs=22.8
Q ss_pred cCHHHHhcCCCCCHHHHHHHHHHHhcCC
Q 005960 594 ASREELVELKGIGQRLADYICELRQSSP 621 (667)
Q Consensus 594 A~~~eL~~lpGIG~~~A~~Ii~~R~~~p 621 (667)
...++|..|||||++.|..|+-+=-..|
T Consensus 110 ~~~~~L~~lpGIG~~TA~~il~~a~g~~ 137 (226)
T 1orn_A 110 RDRDELMKLPGVGRKTANVVVSVAFGVP 137 (226)
T ss_dssp SCHHHHTTSTTCCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHCCCccHHHHHHHHHHHCCCc
Confidence 3689999999999999999998643333
No 109
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=69.67 E-value=4.3 Score=46.79 Aligned_cols=58 Identities=14% Similarity=0.177 Sum_probs=39.9
Q ss_pred cccCcccCHHHHhcCCCCCHHHHHHHHHHHhc---CCC--------------------------------CCHHHHhhc-
Q 005960 588 IDFLNTASREELVELKGIGQRLADYICELRQS---SPV--------------------------------KSLSDLEKI- 631 (667)
Q Consensus 588 ~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~---~pf--------------------------------~~~~dL~~v- 631 (667)
+-+|=+++.++|..|+|+|+|.|++|++.=+. .|| .+.+||..|
T Consensus 471 ~aDL~~L~~~~L~~l~gfG~Ksa~nLl~aIe~sk~~~l~R~L~algi~~VG~~~Ak~La~~Fgsl~~l~~As~eeL~~i~ 550 (671)
T 2owo_A 471 PADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVP 550 (671)
T ss_dssp GGGGGTCCHHHHHTSTTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHCSHHHHHTCCHHHHTTST
T ss_pred HHHHHhhCHHHhhcccccchhHHHHHHHHHHHHhcCChhheehhhcccCccHHHHHHHHHHcCCHHHHHhCCHHHHhhcC
Confidence 34455667788888888888888888865221 132 456778888
Q ss_pred CCCHHHHHHHhccc
Q 005960 632 GLSTKQVYNLFGKA 645 (667)
Q Consensus 632 Gi~~~~~~~l~~~~ 645 (667)
|||++..+.|....
T Consensus 551 GIG~~~A~sI~~ff 564 (671)
T 2owo_A 551 DVGIVVASHVHNFF 564 (671)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99988877776544
No 110
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=69.23 E-value=1.1 Score=44.87 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=29.0
Q ss_pred eeeeceeeCCCCCchhHHHHhhccchh-----hhhcCCCCEEEEeeccCCCCCccee
Q 005960 81 CYQLDSFFGQEDESVSKIFYSEVNPLI-----PGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 81 ~F~FD~Vf~~~~~sQ~~Vf~~~v~plV-----~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.+.||.+.+.+. ..+.+......++. ...--.....|+-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEK-QMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHH-HHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHH-HHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 488999988653 22333332222211 1111123445889999999999865
No 111
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=68.57 E-value=1.2 Score=51.18 Aligned_cols=45 Identities=24% Similarity=0.308 Sum_probs=33.8
Q ss_pred ccCcccCHHHHhcCCCCCHHHHHHHHHHHhcC-CCCCHHHHhhcCC
Q 005960 589 DFLNTASREELVELKGIGQRLADYICELRQSS-PVKSLSDLEKIGL 633 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~-pf~~~~dL~~vGi 633 (667)
-.|-.|+.++|..+||||+++|+.|+++-... -..-++.|...||
T Consensus 536 ~~l~~As~eeL~~i~GIG~~~A~sI~~ff~~~~~~~~i~~L~~~gv 581 (671)
T 2owo_A 536 EALEAASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGV 581 (671)
T ss_dssp HHHHTCCHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHHHHHHHHTC
T ss_pred HHHHhCCHHHHhhcCCCCHHHHHHHHHHHHhHHHHHHHHHHHHcCC
Confidence 35678999999999999999999999986422 3344555655565
No 112
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=68.39 E-value=2.7 Score=35.72 Aligned_cols=29 Identities=31% Similarity=0.277 Sum_probs=21.8
Q ss_pred cccccCcccCHHHHhcCCCCCHHHHHHHHHH
Q 005960 586 EYIDFLNTASREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 586 ~~~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
.++..| .+..|+..|+|||+++|++|=+.
T Consensus 49 ~~P~~i--~s~~e~~~L~giG~ki~~~L~e~ 77 (87)
T 2kp7_A 49 RYPLPL--RSGKEAKILQHFGDRLCRMLDEK 77 (87)
T ss_dssp HCCSCC--CSHHHHHTCTTTCHHHHHHHHHH
T ss_pred hCCCCC--CCHHHHHHhhcccHHHHHHHHHH
Confidence 344444 46789999999999999887543
No 113
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=68.05 E-value=3.3 Score=46.83 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=38.0
Q ss_pred cccccCcccCHHHHhcCCCCCHHHHHHHHHHHhcC-----------CCCCHHHHhhc-CCCHHHHHHHhcc
Q 005960 586 EYIDFLNTASREELVELKGIGQRLADYICELRQSS-----------PVKSLSDLEKI-GLSTKQVYNLFGK 644 (667)
Q Consensus 586 ~~~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~-----------pf~~~~dL~~v-Gi~~~~~~~l~~~ 644 (667)
....+|+....++|..|||||++.+..|-++-++. .-..+.+|.+| |||+++..+|.+.
T Consensus 46 ~l~~~i~~~~~~~~~~lp~iG~~~~~~i~~~v~~g~~~~~~~~~~~~~~~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 46 ELNEETPELLAREFTGIPKVGKGIAAELSDFARSGTFAPLEAAAGQLPPGLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp SCC----------CCSSTTCCHHHHHHHHHHHHHSSCHHHHHHHHHSCHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred hCchhhhhhhHhhhhhcCCCChhHHHHHHHHHcCChHHHHHHHhhhhHHHHHHHhCCCCcCHHHHHHHHHc
Confidence 34556777766669999999999999987764322 11245678889 9999999999876
No 114
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=67.93 E-value=1.1 Score=44.05 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=15.8
Q ss_pred CCEEEEeeccCCCCCccee
Q 005960 114 RNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 114 ~N~tIfaYGqTGSGKTyTm 132 (667)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456899999999999865
No 115
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=67.83 E-value=2.8 Score=41.81 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=20.6
Q ss_pred cCHHHHhcCCCCCHHHHHHHHHHH
Q 005960 594 ASREELVELKGIGQRLADYICELR 617 (667)
Q Consensus 594 A~~~eL~~lpGIG~~~A~~Ii~~R 617 (667)
...++|..|||||++.|+.|+-+=
T Consensus 135 ~~~~~L~~lpGIG~kTA~~ill~a 158 (233)
T 2h56_A 135 TVIEKLTAIKGIGQWTAEMFMMFS 158 (233)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcCHHHHHHHHHHh
Confidence 346789999999999999998864
No 116
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=67.81 E-value=1.1 Score=44.62 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=28.7
Q ss_pred eeeeceeeCCCCCchhHHHHhhccchh-----hhhcCCCCEEEEeeccCCCCCccee
Q 005960 81 CYQLDSFFGQEDESVSKIFYSEVNPLI-----PGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 81 ~F~FD~Vf~~~~~sQ~~Vf~~~v~plV-----~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.+.||.+.+.+. ..+.+.. .+..+- ..+-......|+-||++|+|||+.+
T Consensus 7 ~~~~~~i~G~~~-~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEE-AKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTT-THHHHHH-HHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHH-HHHHHHH-HHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 478899988764 3333332 222111 1111122334889999999999875
No 117
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=67.77 E-value=1.5 Score=47.71 Aligned_cols=49 Identities=27% Similarity=0.398 Sum_probs=28.6
Q ss_pred eeeeeceeeCCCCCchhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceec
Q 005960 80 ECYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 80 ~~F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
..|+||.+..... + ...+. .+..+...- |....++-||++|+|||+.+.
T Consensus 100 ~~~tfd~fv~g~~-n-~~a~~-~~~~~a~~~--~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 100 PDYTFENFVVGPG-N-SFAYH-AALEVAKHP--GRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp TTCSGGGCCCCTT-T-HHHHH-HHHHHHHST--TSSCCEEEECSSSSSHHHHHH
T ss_pred CCCChhhcCCCCc-h-HHHHH-HHHHHHhCC--CCCCeEEEECCCCCCHHHHHH
Confidence 3589988663221 3 22332 333333331 213357889999999999864
No 118
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=67.25 E-value=2.9 Score=41.38 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=19.8
Q ss_pred CHHHHh-cCCCCCHHHHHHHHHH
Q 005960 595 SREELV-ELKGIGQRLADYICEL 616 (667)
Q Consensus 595 ~~~eL~-~lpGIG~~~A~~Ii~~ 616 (667)
..++|. .|||||+++|.-|+-+
T Consensus 122 ~re~Ll~~LpGVG~KTA~~vL~~ 144 (214)
T 3fhf_A 122 AREFLVRNIKGIGYKEASHFLRN 144 (214)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHH
Confidence 567899 9999999999999876
No 119
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=66.95 E-value=1.6 Score=41.84 Aligned_cols=23 Identities=43% Similarity=0.603 Sum_probs=18.3
Q ss_pred hhhhcCCCCEEEEeeccCCCCCcce
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYT 131 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyT 131 (667)
+..+++|.+ ++..++||||||.+
T Consensus 45 i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 45 IMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 445667776 68899999999987
No 120
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=66.89 E-value=1.7 Score=41.04 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=17.6
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+..+++|.+ ++..++||||||.+.
T Consensus 34 i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 34 IPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHccCCC--EEEECCCCCchHHHH
Confidence 344566766 577899999999754
No 121
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=66.85 E-value=1.3 Score=45.33 Aligned_cols=50 Identities=22% Similarity=0.207 Sum_probs=28.5
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhh-----hhcCCCCEEEEeeccCCCCCccee
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIP-----GIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~-----~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+.||.+.+.+. .-+.+.+.+..|+.. .+--.....|+-||++|+|||+.+
T Consensus 12 ~~~~di~G~~~-~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLED-VKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHH-HHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHH-HHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 67888887653 223343333222211 111123456889999999999864
No 122
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=66.54 E-value=4.1 Score=45.96 Aligned_cols=46 Identities=26% Similarity=0.474 Sum_probs=38.4
Q ss_pred HhcCCCCCHHHHHHHHHHHhcC-----------CCCCHHHHhhc-CCCHHHHHHHhcc
Q 005960 599 LVELKGIGQRLADYICELRQSS-----------PVKSLSDLEKI-GLSTKQVYNLFGK 644 (667)
Q Consensus 599 L~~lpGIG~~~A~~Ii~~R~~~-----------pf~~~~dL~~v-Gi~~~~~~~l~~~ 644 (667)
|..|||||++++..|-++-++- ....+.+|.+| ||||++..+|...
T Consensus 55 ~~~lp~iG~~~~~~i~~~v~~g~~~l~~~~~~~~~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 55 LMELPGVGPDLAEKILEFLRTGKVRKHEELSRKVPRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp HHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHHHSCHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred HHhCCCCCHHHHHHHHHHHHcCcHHHHhhhhhhhHHHHHHHhcCCCcCHHHHHHHHHh
Confidence 9999999999999998875432 23557788999 9999999999775
No 123
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=66.07 E-value=2.4 Score=44.86 Aligned_cols=43 Identities=21% Similarity=0.441 Sum_probs=37.5
Q ss_pred ccCcccCHHHHhcC------CCCCHHHHHHHHHHHhcCCCCCHHHHhhc
Q 005960 589 DFLNTASREELVEL------KGIGQRLADYICELRQSSPVKSLSDLEKI 631 (667)
Q Consensus 589 v~iNtA~~~eL~~l------pGIG~~~A~~Ii~~R~~~pf~~~~dL~~v 631 (667)
..||+++.++|..| ---..++|++|++.|+..||.+-.||.++
T Consensus 172 dvvn~~~e~eLa~Il~~YGEEr~a~rIA~aIv~~R~~~pi~tT~~La~i 220 (347)
T 3tka_A 172 EWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEV 220 (347)
T ss_dssp HHHHHCCHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHSCCCBHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHhcCcchHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 57899999999886 23678999999999999999999999774
No 124
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=66.02 E-value=1.7 Score=47.43 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=29.7
Q ss_pred eeeeceeeCCCCCchhHHHHhhccchhhhhcCCCC--EEEEeeccCCCCCccee
Q 005960 81 CYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRN--ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 81 ~F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G~N--~tIfaYGqTGSGKTyTm 132 (667)
.|.||.+.+.+. +. ..+..+++.+..|.. ..++-||++|+|||+..
T Consensus 33 ~~~~~~iiG~~~-----~~-~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVGQEN-----AR-EACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEESCHH-----HH-HHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccCHHH-----HH-HHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 477888887642 22 223344455555543 35788999999999865
No 125
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=65.98 E-value=3.5 Score=35.34 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=22.1
Q ss_pred cCHHHHhcCCCCCHHHHHHHHHHH
Q 005960 594 ASREELVELKGIGQRLADYICELR 617 (667)
Q Consensus 594 A~~~eL~~lpGIG~~~A~~Ii~~R 617 (667)
++.++|..+||||+++|++|++..
T Consensus 67 ~s~edL~~v~Gig~k~~~~l~~~g 90 (98)
T 2edu_A 67 SQVEDLERVEGITGKQMESFLKAN 90 (98)
T ss_dssp SSGGGGGGSTTCCHHHHHHHHHHH
T ss_pred CCHHHHHhCCCCCHHHHHHHHHCc
Confidence 788999999999999999998865
No 126
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=65.94 E-value=1.4 Score=41.16 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=14.2
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.++-||++|+|||+.+
T Consensus 40 ~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 40 HLLFSGPPGTGKTATA 55 (226)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999875
No 127
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=65.36 E-value=1.9 Score=40.70 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=17.2
Q ss_pred hhhcCCCCEEEEeeccCCCCCcce
Q 005960 108 PGIFHGRNATVFAYGATGSGKTYT 131 (667)
Q Consensus 108 ~~vl~G~N~tIfaYGqTGSGKTyT 131 (667)
..+++|.+ ++..++||||||.+
T Consensus 33 ~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 33 PLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHcCCCC--EEEECCCCChHHHH
Confidence 44566766 57788999999987
No 128
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=64.08 E-value=3.7 Score=41.03 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.3
Q ss_pred CHHHHhcCCCCCHHHHHHHHHHH
Q 005960 595 SREELVELKGIGQRLADYICELR 617 (667)
Q Consensus 595 ~~~eL~~lpGIG~~~A~~Ii~~R 617 (667)
..++|.+|||||++.|+.|+-+=
T Consensus 148 ~~~~L~~l~GIG~~TA~~ill~a 170 (232)
T 4b21_A 148 LMESLSKIKGVKRWTIEMYSIFT 170 (232)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHT
T ss_pred HHHHHHhCCCcCHHHHHHHHHHh
Confidence 46789999999999999988775
No 129
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=64.08 E-value=1.6 Score=43.92 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=29.8
Q ss_pred eeeeceeeCCCCCchhHHHHhhccchhh-hhcCC---CCEEEEeeccCCCCCccee
Q 005960 81 CYQLDSFFGQEDESVSKIFYSEVNPLIP-GIFHG---RNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 81 ~F~FD~Vf~~~~~sQ~~Vf~~~v~plV~-~vl~G---~N~tIfaYGqTGSGKTyTm 132 (667)
...||.+.+.+. .-+.+......++.. ..+.| ....|+-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDV-AKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHH-HHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHH-HHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 367888887643 223333333333221 12222 3457899999999999864
No 130
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=64.01 E-value=4.5 Score=41.84 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=30.9
Q ss_pred hcCCCCCHHHHHHHHHHHhcCCCCCHHHHhh-c-CC-CHHHHHHHhcc
Q 005960 600 VELKGIGQRLADYICELRQSSPVKSLSDLEK-I-GL-STKQVYNLFGK 644 (667)
Q Consensus 600 ~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~-v-Gi-~~~~~~~l~~~ 644 (667)
-.+||||+|+|.++|+ .|.++|.+.+ + .+ .++.-++|+..
T Consensus 206 PGVpGIG~KTA~kLL~-----~~gsle~i~~~~~~~~~~~~~~~L~~~ 248 (290)
T 1exn_A 206 RGVEGIGAKRGYNIIR-----EFGNVLDIIDQLPLPGKQKYIQNLNAS 248 (290)
T ss_dssp CCCTTCCHHHHHHHHH-----HHCSHHHHHHHCSCSCCCHHHHHHHTC
T ss_pred CCCCcCCHhHHHHHHH-----HcCCHHHHHHHHHHhccHHHHHHHHHh
Confidence 3589999999999997 3789999866 6 77 66666666543
No 131
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=63.95 E-value=1.5 Score=43.25 Aligned_cols=50 Identities=20% Similarity=0.219 Sum_probs=27.6
Q ss_pred eeeeceeeCCCCCchhHHHHhhccchhh-hhcC----CCCEEEEeeccCCCCCccee
Q 005960 81 CYQLDSFFGQEDESVSKIFYSEVNPLIP-GIFH----GRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 81 ~F~FD~Vf~~~~~sQ~~Vf~~~v~plV~-~vl~----G~N~tIfaYGqTGSGKTyTm 132 (667)
.+.||.+.+.+. ..+.+.. .+..+.. ..+. .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~-~~~~l~~-~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDE-AKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHH-HHHHTHH-HHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHH-HHHHHHH-HHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 368888888653 2122221 2222111 1111 12345899999999999865
No 132
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=63.89 E-value=1.8 Score=44.50 Aligned_cols=41 Identities=29% Similarity=0.439 Sum_probs=24.7
Q ss_pred eeceeeCCCCCchhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 83 QLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 83 ~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|+.+++.+. - +..+...+..|....++-||++|+|||+++
T Consensus 35 ~~~~i~g~~~-~--------~~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 35 NLDEVTAQDH-A--------VTVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp STTTCCSCCT-T--------HHHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred CHHHhhCCHH-H--------HHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 5666666542 1 222333334453233888999999999875
No 133
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=63.48 E-value=2.2 Score=49.12 Aligned_cols=44 Identities=30% Similarity=0.311 Sum_probs=33.0
Q ss_pred cCcccCHHHHhcCCCCCHHHHHHHHHHHhcC-CCCCHHHHhhcCC
Q 005960 590 FLNTASREELVELKGIGQRLADYICELRQSS-PVKSLSDLEKIGL 633 (667)
Q Consensus 590 ~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~-pf~~~~dL~~vGi 633 (667)
.|-.|+.++|..++|||+++|+.|+++-... --.-++.|...||
T Consensus 532 ~l~~As~eeL~~I~GIG~~~A~sI~~ff~~~~~~~~i~~L~~~gv 576 (667)
T 1dgs_A 532 RLLEASLEELIEVEEVGELTARAILETLKDPAFRDLVRRLKEAGV 576 (667)
T ss_dssp HHTTCCHHHHHTSTTCCHHHHHHHHHHHHCHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHhccCcCHHHHHHHHHHHhhHHHHHHHHHHHHcCC
Confidence 3568999999999999999999999876422 2344556655565
No 134
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=63.40 E-value=3.4 Score=44.21 Aligned_cols=29 Identities=38% Similarity=0.564 Sum_probs=25.4
Q ss_pred cccCcccCHHHHhcCCCCCHHHHHHHHHH
Q 005960 588 IDFLNTASREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 588 ~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
+-+|=+|+.+||+.+.|||+++|++|-+.
T Consensus 338 Lq~Il~AS~eEL~~VeGIGe~rAr~Ireg 366 (377)
T 3c1y_A 338 LDQISKASVEDLKKVEGIGEKRARAISES 366 (377)
T ss_dssp HHHHTTCCHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHhccCccHHHHHHHHHH
Confidence 34677999999999999999999998654
No 135
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=63.35 E-value=1.6 Score=45.93 Aligned_cols=50 Identities=24% Similarity=0.352 Sum_probs=28.6
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhhh-h---cCCCCEEEEeeccCCCCCccee
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIPG-I---FHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~-v---l~G~N~tIfaYGqTGSGKTyTm 132 (667)
..||.+.+.+. .-+.+.+.+..|+... + +.+....|+-||++|+|||+..
T Consensus 81 ~~~~~i~G~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 81 VNWEDIAGVEF-AKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCGGGSCSCHH-HHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCHHHhCChHH-HHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 57777777542 2233333322222111 1 2244567899999999999865
No 136
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=63.28 E-value=16 Score=38.21 Aligned_cols=204 Identities=12% Similarity=0.127 Sum_probs=107.7
Q ss_pred ceeeeeceeeCCCCCchhHHHHhhccchhhhhc-CCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc--
Q 005960 79 SECYQLDSFFGQEDESVSKIFYSEVNPLIPGIF-HGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-- 155 (667)
Q Consensus 79 ~~~F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl-~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~-- 155 (667)
...|.|++|+..+.-+-.+++...++..++-++ .+.|+.||..|..- + +..-..|+..+..
T Consensus 91 ~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~~------------w----~~Lr~~lL~fi~~k~ 154 (333)
T 4etp_B 91 EHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTTP------------H----GSLRESLIKFLAEKD 154 (333)
T ss_dssp CCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESSC------------C----CHHHHHHHHHHHSTT
T ss_pred cceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCeeEEEecCCC------------c----HHHHHHHHHHHHhcc
Confidence 457999999977655567888889999999999 89999999998642 1 1222333333322
Q ss_pred ----CCceEEEEEEEEecce-eeeccCCCC----CceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccC
Q 005960 156 ----TGSTAEISYYEVYMDR-CYDLLEVKT----KEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTG 226 (667)
Q Consensus 156 ----~~~~v~vS~~EIYnE~-v~DLL~~~~----~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~ 226 (667)
..|.+.+-|+.+.++- ..|||.+.. ..+.+.-+. ..+.+ +-..+.+.+..+...++.. ..+.
T Consensus 155 ~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~~~~~~~~I~lkiee-~sI~l-dS~~i~i~~~~~~l~~~~k-------l~~~ 225 (333)
T 4etp_B 155 TIYQKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEK-HSISL-DSKLVIIENGLEDLPLNFS-------ADEH 225 (333)
T ss_dssp CHHHHHEEEEEEEEECCSSSCCEESSCC----------CEEET-TEEEC-CSCCEEESSGGGGSCTTSS-------CCC-
T ss_pred cccccceEEEEEEEEEcCCCchhhhhccccccCCCCceEEeec-ceEee-cceEEEeccccccchhhhc-------cccC
Confidence 3568888888877765 799998652 222211110 11111 2233445444432211110 0000
Q ss_pred CCCCCCCcEEEEEEEEEEEeCC--CCCceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCCC
Q 005960 227 LNDVSSRSHGVLVISVSTLLGD--DSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKP 304 (667)
Q Consensus 227 ~N~~SSRSH~If~I~v~~~~~~--~~~~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~ 304 (667)
-+. -...-.|+.+.+.....+ +......-..+||.+-+.. .+..|.++|..=
T Consensus 226 ~~~-~~~GI~IlKfqf~~~~~~~~~n~~~~~~~fYFiEi~~~~--------------------ti~~l~~~i~~~----- 279 (333)
T 4etp_B 226 PNL-PHSGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNLK--------------------SIEQFDKSIFKK----- 279 (333)
T ss_dssp --------CEEEEEEEEECC--------CCCEEEEEEEECSHH--------------------HHHHHHSCC--------
T ss_pred CCC-CCCCceEEEEEEEecCcccccccCCcceeEEEEEecChh--------------------HHHHHHhhcCcc-----
Confidence 000 112344666666654332 1111123468888885432 223333333221
Q ss_pred CCCCCCchhhhhhhcccCCCccceEEEEeCCC
Q 005960 305 RVPYRESKLTRILQDSLGGTSHALMVACLNPG 336 (667)
Q Consensus 305 ~IPYRdSkLTrLLqdsLgGnskt~mIa~vsP~ 336 (667)
-.-.|+++-+||--|. ..+.++|.++.-+
T Consensus 280 --~~~~spi~~ilkkLl~-~TKS~flfnl~~~ 308 (333)
T 4etp_B 280 --ESAETPIALVLKKLIS-DTKSFFLLNLNDS 308 (333)
T ss_dssp ---CCCCHHHHHHHHHHH-HSBCEEEEEECCS
T ss_pred --cccCCCHHHHHHHHHh-hCcceEEEEcCCc
Confidence 1335778888876443 5788999999754
No 137
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=62.89 E-value=3.9 Score=42.26 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.8
Q ss_pred CHHHHhc-CCCCCHHHHHHHHHHH
Q 005960 595 SREELVE-LKGIGQRLADYICELR 617 (667)
Q Consensus 595 ~~~eL~~-lpGIG~~~A~~Ii~~R 617 (667)
+.++|.+ |||||+++|..|+-+=
T Consensus 126 ~~~~Ll~~LpGIG~kTA~~iL~~a 149 (287)
T 3n5n_X 126 TAETLQQLLPGVGRYTAGAIASIA 149 (287)
T ss_dssp SHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHh
Confidence 5899998 9999999999998765
No 138
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=62.64 E-value=3.6 Score=38.90 Aligned_cols=57 Identities=18% Similarity=0.133 Sum_probs=44.1
Q ss_pred cccCcccCHHHHhc-CCCCC--HHHHHHHHHHHhcC-CCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 588 IDFLNTASREELVE-LKGIG--QRLADYICELRQSS-PVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 588 ~v~iNtA~~~eL~~-lpGIG--~~~A~~Ii~~R~~~-pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
+-.+-.|+.++|.. +.|+| ..+|++|++.=+.. | ++.++|.++ |||+.+...++-..
T Consensus 63 ~~~la~a~~~el~~~i~~lG~y~~KAk~i~~~a~~~vp-~~~~~L~~LpGVG~yTAdav~~F~ 124 (161)
T 4e9f_A 63 AEVARTADWRDVSELLKPLGLYDLRAKTIVKFSDEYLT-KQWKYPIELHGIGKYGNDSYRIFC 124 (161)
T ss_dssp HHHHTTSCHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH-SCCSSGGGSTTCCHHHHHHHHHHT
T ss_pred HHHHhccChHhHHhHhhhcCCHHHHHHHHHHHhCCcCC-CChhhhhcCCCchHHHHHHHHHHH
Confidence 34566889999855 68998 57999999865544 4 467899999 99999999876543
No 139
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=62.64 E-value=2.5 Score=42.15 Aligned_cols=21 Identities=29% Similarity=0.234 Sum_probs=18.0
Q ss_pred CCCCEEEEeeccCCCCCccee
Q 005960 112 HGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 112 ~G~N~tIfaYGqTGSGKTyTm 132 (667)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566778999999999999865
No 140
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=62.56 E-value=4.1 Score=40.42 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=19.5
Q ss_pred HHHHhcCCCCCHHHHHHHHHHH
Q 005960 596 REELVELKGIGQRLADYICELR 617 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R 617 (667)
.++|..|||||++.|+.|+-+=
T Consensus 145 ~~~L~~l~GIG~~TA~~ill~~ 166 (225)
T 2yg9_A 145 IAELVQLPGIGRWTAEMFLLFA 166 (225)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHHcCCCCCHHHHHHHHHHh
Confidence 5789999999999999998764
No 141
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=61.91 E-value=2.3 Score=41.46 Aligned_cols=24 Identities=50% Similarity=0.821 Sum_probs=19.0
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCcce
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYT 131 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyT 131 (667)
.+..+++|.+ ++..++||||||.+
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3455677877 68889999999986
No 142
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=61.86 E-value=4.2 Score=41.64 Aligned_cols=47 Identities=21% Similarity=0.300 Sum_probs=29.5
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcCC-CCCHHHH--hh-c-CCCHHHHHHHh
Q 005960 596 REELVELKGIGQRLADYICELRQSSP-VKSLSDL--EK-I-GLSTKQVYNLF 642 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~~~p-f~~~~dL--~~-v-Gi~~~~~~~l~ 642 (667)
.++|.+|||||++.|+.|+-+=-..| ---++|+ .+ + ..+++.++++.
T Consensus 206 ~~~L~~lpGIG~~TA~~ill~~lg~~d~~pvdd~~~r~~l~~~~~~~~~~~~ 257 (282)
T 1mpg_A 206 MKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYA 257 (282)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHhcCCCcCHHHHHHHHHHhCCCCCcCccccHHHHHHhccCCHHHHHHHH
Confidence 68899999999999999887532223 1122333 23 3 55666555543
No 143
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=61.69 E-value=4.3 Score=40.35 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.6
Q ss_pred HHHHhcCCCCCHHHHHHHHHHH
Q 005960 596 REELVELKGIGQRLADYICELR 617 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R 617 (667)
.++|..|||||++.|+.|+-+-
T Consensus 138 ~~~L~~l~GIG~~TA~~ill~~ 159 (228)
T 3s6i_A 138 IERLTQIKGIGRWTVEMLLIFS 159 (228)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHT
T ss_pred HHHHHhCCCcCHHHHHHHHHHh
Confidence 6789999999999999998764
No 144
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=61.36 E-value=3.9 Score=42.18 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.0
Q ss_pred CHHHHhcCCCCCHHHHHHHHHHH
Q 005960 595 SREELVELKGIGQRLADYICELR 617 (667)
Q Consensus 595 ~~~eL~~lpGIG~~~A~~Ii~~R 617 (667)
..++|.+|||||++.|+.|+-+=
T Consensus 209 ~~~~L~~lpGIG~~TA~~ill~~ 231 (290)
T 3i0w_A 209 CHEELKKFMGVGPQVADCIMLFS 231 (290)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCcCHHHHHHHHHHh
Confidence 46789999999999999998654
No 145
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=60.89 E-value=4.4 Score=43.00 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=23.4
Q ss_pred cCHHHHhcCCCCCHHHHHHHHHHHhcCC
Q 005960 594 ASREELVELKGIGQRLADYICELRQSSP 621 (667)
Q Consensus 594 A~~~eL~~lpGIG~~~A~~Ii~~R~~~p 621 (667)
.+.++|..|||||+++|..|+-+=-..|
T Consensus 115 ~~~~~L~~l~GIG~~tA~~il~~~~~~~ 142 (369)
T 3fsp_A 115 DDPDEFSRLKGVGPYTVGAVLSLAYGVP 142 (369)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCCC
T ss_pred hHHHHHhcCCCcCHHHHHHHHHHHCCCC
Confidence 4789999999999999999998754334
No 146
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=60.47 E-value=1.6 Score=42.73 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=19.1
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.+..+++|.| ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3445667877 678999999999873
No 147
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=60.20 E-value=2.9 Score=45.43 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=21.7
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCcceec
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
++..++..-...|.-.|+||||||.+|.
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4555555556788999999999999873
No 148
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=59.44 E-value=4.7 Score=46.43 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=16.0
Q ss_pred CCHHHHhhc-CCCHHHHHHHhccc
Q 005960 623 KSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 623 ~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
.+.++|..| |||++..+.|....
T Consensus 536 As~eeL~~I~GIG~~~A~sI~~ff 559 (667)
T 1dgs_A 536 ASLEELIEVEEVGELTARAILETL 559 (667)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCHHHHHhccCcCHHHHHHHHHHH
Confidence 345677888 88888877666543
No 149
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=59.40 E-value=4.9 Score=41.47 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.5
Q ss_pred CHHHHhcCCCCCHHHHHHHHHH
Q 005960 595 SREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 595 ~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
..++|.+|||||++.|+.|+-+
T Consensus 208 ~~~~L~~lpGIG~~TA~~ill~ 229 (295)
T 2jhn_A 208 AYEYLTSFKGIGRWTAELVLSI 229 (295)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCCcCHHHHHHHHHH
Confidence 4688999999999999998875
No 150
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=59.26 E-value=5.1 Score=32.61 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=36.4
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhcCCCCCHH--------HHhhc-CCCHHHHHHHhcccc
Q 005960 597 EELVELKGIGQRLADYICELRQSSPVKSLS--------DLEKI-GLSTKQVYNLFGKAA 646 (667)
Q Consensus 597 ~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~--------dL~~v-Gi~~~~~~~l~~~~~ 646 (667)
.-++...||++..|+..++. +|.+++ +|..| ||+..++++|+.+..
T Consensus 6 ~~f~~~lgI~e~~a~~L~~~----Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~ 60 (70)
T 1u9l_A 6 DTFTKYLDIDEDFATVLVEE----GFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 60 (70)
T ss_dssp HHHHHHHTCCHHHHHHHHHT----TCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHc----CcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHH
Confidence 44667779999999988776 677655 56678 999999999998764
No 151
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=59.26 E-value=3 Score=43.07 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=19.3
Q ss_pred hhhhhc-CCCCEEEEeeccCCCCCccee
Q 005960 106 LIPGIF-HGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl-~G~N~tIfaYGqTGSGKTyTm 132 (667)
.+..++ .+....++-||++|+|||+.+
T Consensus 34 ~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 34 VLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 333433 344557899999999999875
No 152
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=58.59 E-value=2.6 Score=40.34 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=18.0
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+..+++|.+ ++..++||||||.+.
T Consensus 45 i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 45 IPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCchhhhh
Confidence 345567777 567789999999864
No 153
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=58.49 E-value=3.1 Score=40.31 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=18.1
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+..+++|.+ ++..++||||||.+.
T Consensus 56 i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 56 IGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 345667877 567789999999863
No 154
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=57.90 E-value=2.5 Score=43.85 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=29.2
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhh-hhcCCC---CEEEEeeccCCCCCccee
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIP-GIFHGR---NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~-~vl~G~---N~tIfaYGqTGSGKTyTm 132 (667)
..||.|.+.+. .-+.+.+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~-~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEG-AKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHH-HHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHH-HHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 57888887653 223333333333221 233332 246888999999999864
No 155
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=57.72 E-value=4.9 Score=39.83 Aligned_cols=23 Identities=43% Similarity=0.417 Sum_probs=20.1
Q ss_pred cCHHHHh-cCCCCCHHHHHHHHHH
Q 005960 594 ASREELV-ELKGIGQRLADYICEL 616 (667)
Q Consensus 594 A~~~eL~-~lpGIG~~~A~~Ii~~ 616 (667)
...++|. .|||||++.|.-|+-+
T Consensus 126 ~~r~~L~~~l~GVG~kTA~~vL~~ 149 (219)
T 3n0u_A 126 QSREFLVRNAKGIGWKEASHFLRN 149 (219)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3567899 9999999999999875
No 156
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=57.71 E-value=4.3 Score=41.88 Aligned_cols=43 Identities=26% Similarity=0.430 Sum_probs=36.6
Q ss_pred ccCcccCHHHHhcC------CCCCHHHHHHHHHHHhcCCCCCHHHHhhc
Q 005960 589 DFLNTASREELVEL------KGIGQRLADYICELRQSSPVKSLSDLEKI 631 (667)
Q Consensus 589 v~iNtA~~~eL~~l------pGIG~~~A~~Ii~~R~~~pf~~~~dL~~v 631 (667)
..||+++.++|..| .---.++|.+|+++|+..||.+-.+|.++
T Consensus 132 ~~vn~~~~~~L~~i~~~yGee~~a~~iA~~Iv~~R~~~pi~tt~~L~~i 180 (285)
T 1wg8_A 132 EVVNRLPLEALARLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEI 180 (285)
T ss_dssp HHHHHSCHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHSCCCBHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHhcCHhHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 46899999999886 22358999999999999999999999774
No 157
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.64 E-value=2.7 Score=45.93 Aligned_cols=51 Identities=22% Similarity=0.366 Sum_probs=32.5
Q ss_pred eeeeceeeCCCCCchhHHHHhhccchhh-hhcC--C--CCEEEEeeccCCCCCccee
Q 005960 81 CYQLDSFFGQEDESVSKIFYSEVNPLIP-GIFH--G--RNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 81 ~F~FD~Vf~~~~~sQ~~Vf~~~v~plV~-~vl~--G--~N~tIfaYGqTGSGKTyTm 132 (667)
.-+||.|-+.+. .-+++.+.++.|+.. ..+. | .--.|+-||+.|+|||+..
T Consensus 177 ~~t~~digGl~~-~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 177 TETYSDVGGLDK-QIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCCGGGSCSCHH-HHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChHhcCcHHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 357888888753 334555555555542 2332 2 2346889999999999753
No 158
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=56.87 E-value=3.2 Score=44.08 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=21.7
Q ss_pred chhhhhcCCCCEEEEeeccCCCCCcceec
Q 005960 105 PLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 105 plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
+.+..++.--...|.-.|++|||||.+|.
T Consensus 113 ~~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 44555555555688899999999999873
No 159
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=56.24 E-value=3.8 Score=42.46 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=26.9
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhhhhcCCC-CE--EEEeeccCCCCCccee
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGR-NA--TVFAYGATGSGKTYTM 132 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G~-N~--tIfaYGqTGSGKTyTm 132 (667)
|.++.+++.+ .... .+...+...+.|. .. .++-||++|+|||+++
T Consensus 14 ~~p~~l~gr~-----~~~~-~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 14 YVPKRLPHRE-----QQLQ-QLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp CCCSCCTTCH-----HHHH-HHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred cCCCCCCChH-----HHHH-HHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 5566666543 1222 2333444444443 24 6888999999999875
No 160
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=56.22 E-value=3.4 Score=39.84 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=18.4
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+..+++|.++ +..++||||||.+.
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 4456678775 77899999999863
No 161
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=56.01 E-value=1.7 Score=41.10 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=17.1
Q ss_pred hhcCCCCEEEEeeccCCCCCcceec
Q 005960 109 GIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 109 ~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
.+++|.+ ++..++||+|||.+..
T Consensus 44 ~~~~~~~--~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 44 PALEGKN--IIICLPTGSGKTRVAV 66 (216)
T ss_dssp HHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHhcCCC--EEEEcCCCCCHHHHHH
Confidence 3455665 5678999999999753
No 162
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=55.90 E-value=2.4 Score=42.75 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=0.0
Q ss_pred ccCcccCHHHHhcCCCCCHHHHHHHHHH
Q 005960 589 DFLNTASREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
-.|-.|+.++|..+||||+++|++|+++
T Consensus 40 e~L~~a~~~eL~~v~GIG~ktAe~I~~~ 67 (241)
T 1vq8_Y 40 EDVRGADQSALADVSGIGNALAARIKAD 67 (241)
T ss_dssp ----------------------------
T ss_pred HHHHhCCHHHHHhccCCCHHHHHHHHHH
Confidence 4556889999999999999999999664
No 163
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=55.69 E-value=3.4 Score=41.69 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=16.2
Q ss_pred CCCEEEEeeccCCCCCccee
Q 005960 113 GRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 113 G~N~tIfaYGqTGSGKTyTm 132 (667)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 33457899999999999965
No 164
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=55.23 E-value=6.2 Score=42.02 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=20.5
Q ss_pred cCHHHHhcCCCCCHHHHHHHHHHH
Q 005960 594 ASREELVELKGIGQRLADYICELR 617 (667)
Q Consensus 594 A~~~eL~~lpGIG~~~A~~Ii~~R 617 (667)
...++|..|||||++.|+.|+-+=
T Consensus 250 ~~~~~L~~LpGIGp~TA~~ill~a 273 (360)
T 2xhi_A 250 EAHKALCILPGVGTCVADKICLMA 273 (360)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHh
Confidence 346789999999999999998763
No 165
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=55.01 E-value=3.9 Score=42.02 Aligned_cols=45 Identities=27% Similarity=0.559 Sum_probs=26.4
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhhhhc-CCCCEEEEeeccCCCCCccee
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIF-HGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl-~G~N~tIfaYGqTGSGKTyTm 132 (667)
|.++.+++.+. ... .+...+..++ .+....++-||++|+|||+.+
T Consensus 17 ~~p~~~~gr~~-----e~~-~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 17 YIPDELPHRED-----QIR-KIASILAPLYREEKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCSCCTTCHH-----HHH-HHHHSSGGGGGTCCCCCEEEEECTTSSHHHHH
T ss_pred cCCCCCCChHH-----HHH-HHHHHHHHHHcCCCCCeEEEECCCCCCHHHHH
Confidence 56666665432 122 2223333333 244557889999999999865
No 166
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=54.99 E-value=2.5 Score=42.25 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=19.0
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
++..++.|.| ++..++||||||.+.
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHHH
Confidence 3445667776 688999999999863
No 167
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=54.98 E-value=3.6 Score=40.42 Aligned_cols=24 Identities=46% Similarity=0.757 Sum_probs=17.8
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+..+++|.+ ++..++||||||.+.
T Consensus 54 i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 54 IPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 345567776 567789999999764
No 168
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=54.79 E-value=3 Score=41.10 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=13.9
Q ss_pred EEeeccCCCCCccee
Q 005960 118 VFAYGATGSGKTYTM 132 (667)
Q Consensus 118 IfaYGqTGSGKTyTm 132 (667)
++-||++|+|||+.+
T Consensus 52 ~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLA 66 (254)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 899999999999976
No 169
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=54.10 E-value=3.2 Score=37.42 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=14.7
Q ss_pred EEEEeeccCCCCCcceec
Q 005960 116 ATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm~ 133 (667)
..|+-||++|+|||+...
T Consensus 28 ~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp SCEEEEEETTCCHHHHHG
T ss_pred CcEEEECCCCccHHHHHH
Confidence 347789999999998754
No 170
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=53.77 E-value=3.8 Score=36.96 Aligned_cols=19 Identities=32% Similarity=0.660 Sum_probs=15.2
Q ss_pred CCEEEEeeccCCCCCccee
Q 005960 114 RNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 114 ~N~tIfaYGqTGSGKTyTm 132 (667)
.+..|+-||++|+|||+..
T Consensus 23 ~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp CCSCEEEESSTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 4455789999999998753
No 171
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=53.37 E-value=4.8 Score=40.60 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=16.4
Q ss_pred CCEEEEeeccCCCCCcceec
Q 005960 114 RNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 114 ~N~tIfaYGqTGSGKTyTm~ 133 (667)
-...+.-.|++|||||.+|.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHH
Confidence 34577889999999999873
No 172
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.22 E-value=5.8 Score=43.25 Aligned_cols=75 Identities=21% Similarity=0.361 Sum_probs=46.3
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhhh-hcC--CC--CEEEEeeccCCCCCcceec--------------cC---CCCC
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIPG-IFH--GR--NATVFAYGATGSGKTYTMQ--------------GS---EERP 139 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~-vl~--G~--N~tIfaYGqTGSGKTyTm~--------------G~---~~~~ 139 (667)
-+||-|-+-+. .-+++.+.+..|+... .+. |. .-.|+-||+.|+|||+... |+ ....
T Consensus 169 v~~~digGl~~-~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 169 VTYADVGGLDM-QKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp CCGGGSCSCHH-HHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSC
T ss_pred CCHHHhccHHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcccc
Confidence 57788877653 3244444444444321 222 32 3358999999999997652 22 1345
Q ss_pred CChHHHHHHHHhhhccCC
Q 005960 140 GLMPLAMSKILSICQSTG 157 (667)
Q Consensus 140 GLipral~~LF~~~~~~~ 157 (667)
|--.+.++.+|..+....
T Consensus 248 Ge~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 248 GEGPRMVRDVFRLARENA 265 (428)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHcC
Confidence 777888999998776543
No 173
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=53.10 E-value=4.3 Score=42.32 Aligned_cols=25 Identities=36% Similarity=0.476 Sum_probs=19.7
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.+..+++|.+ ++..++||||||.+.
T Consensus 70 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 70 AILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HhHHHhCCCC--EEEECCCCCcccHHH
Confidence 3456677888 678999999999873
No 174
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=52.32 E-value=4 Score=41.79 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=19.8
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.+..++.|..--+++.++||||||...
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 345667773344788999999999863
No 175
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=52.23 E-value=4.2 Score=39.39 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=17.0
Q ss_pred hhhcCCCCEEEEeeccCCCCCcce
Q 005960 108 PGIFHGRNATVFAYGATGSGKTYT 131 (667)
Q Consensus 108 ~~vl~G~N~tIfaYGqTGSGKTyT 131 (667)
..+++|.| ++..++||||||.+
T Consensus 56 ~~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 56 PLGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHhCCCC--EEEECCCCCcHHHH
Confidence 34567877 46678999999987
No 176
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=51.83 E-value=3.5 Score=43.62 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=28.5
Q ss_pred eeeeceeeCCCCCchhHHHHhhccchhh-hhcC---CCCEEEEeeccCCCCCccee
Q 005960 81 CYQLDSFFGQEDESVSKIFYSEVNPLIP-GIFH---GRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 81 ~F~FD~Vf~~~~~sQ~~Vf~~~v~plV~-~vl~---G~N~tIfaYGqTGSGKTyTm 132 (667)
.+.||.+.+.+. .-+.+......++.. .++. .....|+-||++|+|||+..
T Consensus 111 ~~~~~~iiG~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDL-AKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHH-HHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHH-HHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 357888887542 222333322222221 1112 22357899999999999864
No 177
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=51.68 E-value=4.4 Score=40.07 Aligned_cols=24 Identities=42% Similarity=0.695 Sum_probs=17.8
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+..+++|.+ ++..++||||||.+.
T Consensus 74 i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 74 IPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEcCCCCCchhHh
Confidence 445667776 566789999999863
No 178
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=50.81 E-value=3.8 Score=40.01 Aligned_cols=26 Identities=35% Similarity=0.510 Sum_probs=18.3
Q ss_pred chhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 105 PLIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 105 plV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.++..+..|. .++..|+||||||..+
T Consensus 68 ~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 3444555665 4578899999999754
No 179
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=50.52 E-value=3.8 Score=40.04 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=17.6
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+..+++|.+. +..++||||||.+.
T Consensus 60 i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 60 WPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCcCHHHHHH
Confidence 3455678764 56679999999873
No 180
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=50.09 E-value=5.1 Score=40.92 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=22.0
Q ss_pred chhhhhcCCC---CEEEEeeccCCCCCccee
Q 005960 105 PLIPGIFHGR---NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 105 plV~~vl~G~---N~tIfaYGqTGSGKTyTm 132 (667)
..+..+++|. --+|+-||+.|+|||+..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 3466777776 347999999999999864
No 181
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=50.03 E-value=4.1 Score=42.82 Aligned_cols=51 Identities=22% Similarity=0.437 Sum_probs=29.0
Q ss_pred eeeeceeeCCCCCchhHHHHhhccchhh-hhcCCC---CEEEEeeccCCCCCccee
Q 005960 81 CYQLDSFFGQEDESVSKIFYSEVNPLIP-GIFHGR---NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 81 ~F~FD~Vf~~~~~sQ~~Vf~~~v~plV~-~vl~G~---N~tIfaYGqTGSGKTyTm 132 (667)
...||.+.+.+. .-+.+...+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~-~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEG-AKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGG-HHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHH-HHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 367888887653 223343333223211 222221 235888999999999864
No 182
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=49.30 E-value=13 Score=30.18 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=24.3
Q ss_pred ccCcccCHHHHhcCCCCCHHHHHHHHHH
Q 005960 589 DFLNTASREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
-+|=.++.++|..++||++..|++||..
T Consensus 32 edlA~~~~~eL~~i~gise~kA~~ii~a 59 (70)
T 1wcn_A 32 EDLAEQGIDDLADIEGLTDEKAGALIMA 59 (70)
T ss_dssp HHHHTSCHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHccCCCHHHHHHHHHH
Confidence 4555789999999999999999998864
No 183
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=48.96 E-value=6 Score=42.00 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=21.1
Q ss_pred cchhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 104 NPLIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 104 ~plV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.+++..+.-.....+.-.|++|||||.+|
T Consensus 125 ~~~l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 125 PDKVLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp CSSHHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred CHHHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 34455544344567889999999999987
No 184
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.40 E-value=7.7 Score=41.98 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=47.8
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhhh-hcC--CC--CEEEEeeccCCCCCcceec--------------cC---CCCC
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIPG-IFH--GR--NATVFAYGATGSGKTYTMQ--------------GS---EERP 139 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~-vl~--G~--N~tIfaYGqTGSGKTyTm~--------------G~---~~~~ 139 (667)
-+||.|-+-+. .-+++.+.+.-|+... .+. |. .-.|+-||+.|+|||.... |+ ....
T Consensus 145 v~~~dIgGl~~-~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~v 223 (405)
T 4b4t_J 145 STYDMVGGLTK-QIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYI 223 (405)
T ss_dssp CCGGGSCSCHH-HHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSST
T ss_pred CCHHHhCCHHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcccc
Confidence 57788877653 3344555555555432 333 22 2458999999999998742 22 1345
Q ss_pred CChHHHHHHHHhhhccCCc
Q 005960 140 GLMPLAMSKILSICQSTGS 158 (667)
Q Consensus 140 GLipral~~LF~~~~~~~~ 158 (667)
|--.+.++.+|..+.....
T Consensus 224 Gese~~vr~lF~~Ar~~aP 242 (405)
T 4b4t_J 224 GEGSRMVRELFVMAREHAP 242 (405)
T ss_dssp THHHHHHHHHHHHHHHTCS
T ss_pred chHHHHHHHHHHHHHHhCC
Confidence 7778889999988765443
No 185
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=48.30 E-value=4.3 Score=40.63 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.1
Q ss_pred CEEEEeeccCCCCCccee
Q 005960 115 NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 115 N~tIfaYGqTGSGKTyTm 132 (667)
...|+-||++|+|||+..
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346888999999999865
No 186
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=48.08 E-value=9.6 Score=38.80 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=22.3
Q ss_pred HHHHhhccchhhhhcCC-CCEEEEeeccCCCCCccee
Q 005960 97 KIFYSEVNPLIPGIFHG-RNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 97 ~Vf~~~v~plV~~vl~G-~N~tIfaYGqTGSGKTyTm 132 (667)
.+|+..+..++.....+ ....|+..|++|||||+..
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 44444444444333222 2457889999999999853
No 187
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=47.96 E-value=5.8 Score=42.86 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=20.6
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCcce
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYT 131 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyT 131 (667)
.+..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 34556677667789999999999976
No 188
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=47.89 E-value=3.9 Score=40.44 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=15.4
Q ss_pred EEEEeeccCCCCCcceec
Q 005960 116 ATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm~ 133 (667)
-+++-||+.|+|||+...
T Consensus 59 n~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp SEEEEESCGGGCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468999999999998754
No 189
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=47.70 E-value=4.8 Score=42.14 Aligned_cols=24 Identities=46% Similarity=0.703 Sum_probs=18.5
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+..+++|.+ ++..++||||||.+.
T Consensus 68 i~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 68 IKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCCchHHH
Confidence 445677877 677899999999764
No 190
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=47.69 E-value=3.9 Score=40.84 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=0.0
Q ss_pred ccCcccCHHHHhcCCCCCHHHHHHHHHH
Q 005960 589 DFLNTASREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
-.|=.|+.+||..+ |||+++|+.|.++
T Consensus 197 ~~i~~As~eeL~~V-GIG~~~A~~I~~~ 223 (226)
T 3c65_A 197 KKMKEATVEELQRA-NIPRAVAEKIYEK 223 (226)
T ss_dssp ----------------------------
T ss_pred HHHHhCCHHHHHHc-CCCHHHHHHHHHH
Confidence 34567899999999 9999999999865
No 191
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=47.56 E-value=4.2 Score=44.20 Aligned_cols=51 Identities=20% Similarity=0.360 Sum_probs=28.6
Q ss_pred eeeeceeeCCCCCchhHHHHhhccchhh-hhcCC---CCEEEEeeccCCCCCccee
Q 005960 81 CYQLDSFFGQEDESVSKIFYSEVNPLIP-GIFHG---RNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 81 ~F~FD~Vf~~~~~sQ~~Vf~~~v~plV~-~vl~G---~N~tIfaYGqTGSGKTyTm 132 (667)
...||.+.+.+. .-+.+...+..|+-. .++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G~~~-~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEG-AKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHH-HHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHH-HHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 367888877642 212333322222211 22333 2346888999999999864
No 192
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=47.30 E-value=4.6 Score=40.48 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=13.9
Q ss_pred EEeeccCCCCCccee
Q 005960 118 VFAYGATGSGKTYTM 132 (667)
Q Consensus 118 IfaYGqTGSGKTyTm 132 (667)
|+-||++|+|||+.+
T Consensus 76 vll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCcChHHHHH
Confidence 899999999999975
No 193
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=47.26 E-value=3.2 Score=39.77 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=16.8
Q ss_pred hhhcCCCCEEEEeeccCCCCCcce
Q 005960 108 PGIFHGRNATVFAYGATGSGKTYT 131 (667)
Q Consensus 108 ~~vl~G~N~tIfaYGqTGSGKTyT 131 (667)
..+++|.++ +..++||||||.+
T Consensus 36 ~~~~~~~~~--lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 36 PGALRGESM--VGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHTCCE--EEECCSSHHHHHH
T ss_pred HHHhCCCCE--EEECCCCChHHHH
Confidence 445567664 6789999999986
No 194
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=47.11 E-value=4.6 Score=41.74 Aligned_cols=16 Identities=44% Similarity=0.798 Sum_probs=14.1
Q ss_pred EEeeccCCCCCcceec
Q 005960 118 VFAYGATGSGKTYTMQ 133 (667)
Q Consensus 118 IfaYGqTGSGKTyTm~ 133 (667)
++-||+.|+|||+++.
T Consensus 49 ~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIV 64 (340)
T ss_dssp EEEECSSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7789999999999863
No 195
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=46.91 E-value=5.2 Score=37.62 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.8
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
..++-||+.|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47889999999999865
No 196
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=46.34 E-value=4.3 Score=41.61 Aligned_cols=44 Identities=27% Similarity=0.374 Sum_probs=26.8
Q ss_pred eeceeeCCCCCchhHHHHhhccchhhhhc--CCCCEEEEeeccCCCCCccee
Q 005960 83 QLDSFFGQEDESVSKIFYSEVNPLIPGIF--HGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 83 ~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl--~G~N~tIfaYGqTGSGKTyTm 132 (667)
.||.+.+.+. +.. .+..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG~~~-----~~~-~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIGQES-----IKK-NLNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCSCHH-----HHH-HHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCChHH-----HHH-HHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 5777776532 222 2334444433 233456899999999999864
No 197
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=46.07 E-value=9.4 Score=41.32 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=21.4
Q ss_pred cchhhhhcCCCCEEEEeeccCCCCCcce
Q 005960 104 NPLIPGIFHGRNATVFAYGATGSGKTYT 131 (667)
Q Consensus 104 ~plV~~vl~G~N~tIfaYGqTGSGKTyT 131 (667)
+.+|..+++|.+. ++..|+||||||..
T Consensus 9 q~~i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 9 YEVDEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CCCCGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHHHHhcCCe-EEEECCCCCCHhhH
Confidence 4456778888775 56789999999986
No 198
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=46.01 E-value=5.3 Score=41.05 Aligned_cols=50 Identities=22% Similarity=0.458 Sum_probs=28.4
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhh-hhcCCC---CEEEEeeccCCCCCccee
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIP-GIFHGR---NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~-~vl~G~---N~tIfaYGqTGSGKTyTm 132 (667)
..||.+.+.+. .-+.+......|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEG-AKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHH-HHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHH-HHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 67888887643 223333322222211 122222 346899999999999864
No 199
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=45.83 E-value=5.2 Score=40.14 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=15.6
Q ss_pred CCCEEEEeeccCCCCCccee
Q 005960 113 GRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 113 G~N~tIfaYGqTGSGKTyTm 132 (667)
|....++-||+.|+|||++.
T Consensus 36 ~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 36 KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TCCCCEEEESSSSSSHHHHH
T ss_pred CCCCeEEEECcCCcCHHHHH
Confidence 44333889999999999865
No 200
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=45.80 E-value=4.3 Score=40.88 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=15.5
Q ss_pred CEEEEeeccCCCCCccee
Q 005960 115 NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 115 N~tIfaYGqTGSGKTyTm 132 (667)
...++-+|++|+|||++.
T Consensus 47 ~~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELA 64 (311)
T ss_dssp SEEEEEESCSSSSHHHHH
T ss_pred ceEEEEECCCCcCHHHHH
Confidence 367899999999999865
No 201
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=45.68 E-value=6.4 Score=40.73 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=27.8
Q ss_pred eeeeceeeCCCCCchhHHHHhhccchhhhhcC-CCCEEEEeeccCCCCCccee
Q 005960 81 CYQLDSFFGQEDESVSKIFYSEVNPLIPGIFH-GRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 81 ~F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~-G~N~tIfaYGqTGSGKTyTm 132 (667)
.|.++.+++.+. ... .+...+..++. +....|+-||++|+|||+.+
T Consensus 16 ~~~p~~l~gr~~-----~~~-~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 16 LSVFKEIPFRED-----ILR-DAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHCSSCTTCHH-----HHH-HHHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ccCCCCCCChHH-----HHH-HHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 456666666432 222 23334444443 33458999999999999865
No 202
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=45.45 E-value=15 Score=29.84 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.6
Q ss_pred CcccCHHHHhcCCCCCHHHHHHHHHH
Q 005960 591 LNTASREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 591 iNtA~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
|--++.++|..|+||++.+|++|.+.
T Consensus 33 vA~~~~~eL~~I~G~dE~~a~~l~~~ 58 (70)
T 1u9l_A 33 LAYVPMKELLEIEGLDEPTVEALRER 58 (70)
T ss_dssp HHHSCHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHcCCHHHHhhccCCCHHHHHHHHHH
Confidence 34678999999999999999998764
No 203
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=45.15 E-value=20 Score=30.27 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcC-CCCCHHHHhhc-CCCHHHHHHHhcccc
Q 005960 608 RLADYICELRQSS-PVKSLSDLEKI-GLSTKQVYNLFGKAA 646 (667)
Q Consensus 608 ~~A~~Ii~~R~~~-pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 646 (667)
..-+++-..|.-- ||.+..|+..+ |||++..++|..++.
T Consensus 39 ~Y~KA~~sLk~~P~~i~s~~e~~~L~giG~ki~~~L~e~L~ 79 (87)
T 2kp7_A 39 VFQKALRSLQRYPLPLRSGKEAKILQHFGDRLCRMLDEKLK 79 (87)
T ss_dssp HHHHHHHHHHHCCSCCCSHHHHHTCTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHhhcccHHHHHHHHHHHH
Confidence 3445555666655 99999999999 999999999988764
No 204
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=45.09 E-value=5.4 Score=40.17 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=16.2
Q ss_pred CCCCEEEEeeccCCCCCccee
Q 005960 112 HGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 112 ~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|....++-||+.|+|||++.
T Consensus 43 ~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp HTCCCEEEEESCTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 344334889999999999875
No 205
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=44.70 E-value=5.7 Score=39.92 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=17.1
Q ss_pred hhhcCCCCEEEEeeccCCCCCccee
Q 005960 108 PGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 108 ~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+.+++|.+ ++..++||+|||.+.
T Consensus 26 ~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 26 PLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCcHHHHH
Confidence 34556766 567789999999864
No 206
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=44.53 E-value=5.1 Score=41.26 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=18.4
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+..++.|....++..++||||||.+.
T Consensus 36 i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 36 LPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 34456663345688899999999864
No 207
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=44.35 E-value=5.7 Score=41.26 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=19.6
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.+..++.|.+..++..++||||||...
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 345556664455688899999999873
No 208
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=44.29 E-value=6.3 Score=38.79 Aligned_cols=23 Identities=26% Similarity=0.146 Sum_probs=16.8
Q ss_pred hhcCCCCEEEEeeccCCCCCcceec
Q 005960 109 GIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 109 ~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
.++++.+ ++.+|+||+|||+...
T Consensus 104 ~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 104 RWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHhCCC--EEEEeCCCCCHHHHHH
Confidence 3455554 6678899999999753
No 209
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=44.26 E-value=5.2 Score=41.64 Aligned_cols=24 Identities=38% Similarity=0.672 Sum_probs=18.1
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+..+++|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHHH
Confidence 345567776 677899999999764
No 210
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=44.11 E-value=6.3 Score=43.95 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=19.0
Q ss_pred chhhhhcCCCCEEEEeeccCCCCCcceec
Q 005960 105 PLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 105 plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
.+++.+.+|...++++ ++||||||.+++
T Consensus 189 ~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 189 RAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 3344444576655554 999999999864
No 211
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=43.73 E-value=13 Score=40.69 Aligned_cols=75 Identities=27% Similarity=0.359 Sum_probs=46.1
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhh-hhcC--C--CCEEEEeeccCCCCCccee--------------ccC---CCCC
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIP-GIFH--G--RNATVFAYGATGSGKTYTM--------------QGS---EERP 139 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~-~vl~--G--~N~tIfaYGqTGSGKTyTm--------------~G~---~~~~ 139 (667)
-+||.|-+-+. .-+++.+.+..|+.. ..+. | .--.|+-||+.|+|||... -|+ ....
T Consensus 179 v~~~DIgGld~-~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~v 257 (437)
T 4b4t_I 179 ESYSDIGGLES-QIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYL 257 (437)
T ss_dssp CCGGGTCSCHH-HHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSS
T ss_pred CcceecCcHHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccC
Confidence 56777776543 224454444444432 1232 2 2356999999999999764 222 2345
Q ss_pred CChHHHHHHHHhhhccCC
Q 005960 140 GLMPLAMSKILSICQSTG 157 (667)
Q Consensus 140 GLipral~~LF~~~~~~~ 157 (667)
|--.+.++.+|..+....
T Consensus 258 Gesek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 258 GDGPRLCRQIFKVAGENA 275 (437)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHhcC
Confidence 777888999998776543
No 212
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=43.14 E-value=21 Score=34.71 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=36.2
Q ss_pred CcccCHHHHhc-CCCCC--HHHHHHHHHHHhc------CCC-CCHHHHhhc-CCCHHHHHHHhccc
Q 005960 591 LNTASREELVE-LKGIG--QRLADYICELRQS------SPV-KSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 591 iNtA~~~eL~~-lpGIG--~~~A~~Ii~~R~~------~pf-~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
|-.|+.++|.. |.++| ..+|++|.+.-+. ..+ ...++|..+ |||+++..-+.-..
T Consensus 64 la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~~~~~~~g~~~~~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 64 MLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp HHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHTTTSCCSCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHhCCCCChHHHHHHHHHH
Confidence 34566777765 56666 4566666554332 112 567899999 99999988776544
No 213
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=43.01 E-value=7.2 Score=42.62 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=26.3
Q ss_pred eeceeeCCCCCchhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceec
Q 005960 83 QLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 83 ~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
.||.|++.+. .+..+++.+..+....++-||++|+|||+...
T Consensus 178 ~ld~iiGr~~---------~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 178 SLDPVIGRSK---------EIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CSCCCCCCHH---------HHHHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCccCcHH---------HHHHHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 4666666431 22234444444555567889999999999764
No 214
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=42.94 E-value=28 Score=34.18 Aligned_cols=57 Identities=14% Similarity=0.310 Sum_probs=35.8
Q ss_pred ccCcccCHHHHhc-CCCCC--------HHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 589 DFLNTASREELVE-LKGIG--------QRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 589 v~iNtA~~~eL~~-lpGIG--------~~~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
-.|=.|+.++|.. |.|+| .+.|+.|++.-....=...++|..+ |||+++..-+.-..
T Consensus 63 ~~la~~~~~~l~~~i~~~G~~~kA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a 129 (225)
T 1kg2_A 63 TDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLS 129 (225)
T ss_dssp HHHHHSCHHHHHHHHTTSCCTHHHHHHHHHHHHHHHHSTTSCCCSHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhCCCchHHHHHHhcCCCCcHHHHHHHHHHh
Confidence 3445678888865 46666 2444444432211111468999999 99999988876654
No 215
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=42.48 E-value=18 Score=37.01 Aligned_cols=18 Identities=33% Similarity=0.649 Sum_probs=8.8
Q ss_pred HHhcCCCCCHHHHHHHHH
Q 005960 598 ELVELKGIGQRLADYICE 615 (667)
Q Consensus 598 eL~~lpGIG~~~A~~Ii~ 615 (667)
+|..||||++..|++..+
T Consensus 4 ~~~~l~gi~~~~~~kL~~ 21 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVE 21 (322)
T ss_dssp -CTTSTTCCHHHHHHHHH
T ss_pred cHhhcCCCCHHHHHHHHH
Confidence 444555555555554443
No 216
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=42.23 E-value=6.6 Score=40.99 Aligned_cols=24 Identities=46% Similarity=0.559 Sum_probs=18.2
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+..+++|.++ +..++||||||.+.
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHHH
Confidence 3455678774 67899999999754
No 217
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.96 E-value=10 Score=41.71 Aligned_cols=75 Identities=21% Similarity=0.352 Sum_probs=44.8
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhhh-hcC--C--CCEEEEeeccCCCCCcceec--------------cC---CCCC
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIPG-IFH--G--RNATVFAYGATGSGKTYTMQ--------------GS---EERP 139 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~-vl~--G--~N~tIfaYGqTGSGKTyTm~--------------G~---~~~~ 139 (667)
.+||-|-+-+. .-+++.+.+..|+... .+. | .--.|+-||+.|+|||+... |+ ....
T Consensus 206 vt~~DIgGl~~-~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 206 VTYSDVGGCKD-QIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYV 284 (467)
T ss_dssp CCCSSCTTCHH-HHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSS
T ss_pred CCHHHhccHHH-HHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccC
Confidence 56777776643 2234444343444321 333 3 23468999999999997642 21 1335
Q ss_pred CChHHHHHHHHhhhccCC
Q 005960 140 GLMPLAMSKILSICQSTG 157 (667)
Q Consensus 140 GLipral~~LF~~~~~~~ 157 (667)
|--.+.++.+|..+....
T Consensus 285 Gesek~ir~lF~~Ar~~a 302 (467)
T 4b4t_H 285 GEGARMVRELFEMARTKK 302 (467)
T ss_dssp SHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHhcC
Confidence 667788888998765543
No 218
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=41.60 E-value=7.6 Score=42.92 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=15.8
Q ss_pred CCEEEEeeccCCCCCccee
Q 005960 114 RNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 114 ~N~tIfaYGqTGSGKTyTm 132 (667)
....|+-||++|+|||+..
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 4457899999999999864
No 219
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=41.54 E-value=4.4 Score=41.50 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=14.0
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.|+-||++|+|||+.+
T Consensus 48 ~vll~G~pGtGKT~la 63 (331)
T 2r44_A 48 HILLEGVPGLAKTLSV 63 (331)
T ss_dssp CEEEESCCCHHHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 5788999999999875
No 220
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=41.00 E-value=12 Score=36.96 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=23.1
Q ss_pred hHHHHhhccchhhhhcCCC-CEEEEeeccCCCCCcce
Q 005960 96 SKIFYSEVNPLIPGIFHGR-NATVFAYGATGSGKTYT 131 (667)
Q Consensus 96 ~~Vf~~~v~plV~~vl~G~-N~tIfaYGqTGSGKTyT 131 (667)
+.+|...+..++.....+. ...|+..|+.|||||+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHH
Confidence 4455555555554433322 35789999999999974
No 221
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=40.91 E-value=16 Score=33.44 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=24.1
Q ss_pred ccCHHHHhcCCCCCHHHHHHHHHHHhcC
Q 005960 593 TASREELVELKGIGQRLADYICELRQSS 620 (667)
Q Consensus 593 tA~~~eL~~lpGIG~~~A~~Ii~~R~~~ 620 (667)
=.+.|||..++|||++..+.|=++|...
T Consensus 85 F~svedL~~V~GIg~k~~e~l~~~~~~~ 112 (134)
T 1s5l_U 85 YESVEDVLNIPGLTERQKQILRENLEHF 112 (134)
T ss_dssp CSSGGGGGGCTTCCHHHHHHHHHHHTTE
T ss_pred CCCHHHHHhCCCCCHHHHHHHHHhhcce
Confidence 4678999999999999999998888543
No 222
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=40.76 E-value=8.3 Score=42.34 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=20.1
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.+..+++|.+..++..++||||||.+.
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHHH
Confidence 455667774455688999999999873
No 223
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=40.56 E-value=7.2 Score=43.36 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=16.7
Q ss_pred cCCCCEEEEeeccCCCCCcceec
Q 005960 111 FHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 111 l~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
-.|.+ +.-.|+||||||.+|.
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHHH
Confidence 35766 6778999999999863
No 224
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=40.38 E-value=6.8 Score=40.59 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=13.7
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.++-||++|+|||+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CEEEESSTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 3667999999999976
No 225
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.12 E-value=7.4 Score=42.53 Aligned_cols=50 Identities=28% Similarity=0.406 Sum_probs=30.9
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhhh-hcC--CC--CEEEEeeccCCCCCccee
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIPG-IFH--GR--NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~-vl~--G~--N~tIfaYGqTGSGKTyTm 132 (667)
.+||.|-+-+. .-+++.+.+..|+... .+. |. .-.|+-||+.|+|||+..
T Consensus 178 v~~~digGl~~-~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 178 ITFDGIGGLTE-QIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSGGGCSCHH-HHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CChhHhCChHH-HHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 57888887653 3244554444444322 332 22 346899999999999763
No 226
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=39.86 E-value=8.3 Score=40.60 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=17.5
Q ss_pred hhhhcCCCCEEEEeeccCCCCCcce
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYT 131 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyT 131 (667)
+..+++|.| ++..++||||||..
T Consensus 30 i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 30 AKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHhcCCC--EEEEeCCCCCHHHH
Confidence 344567775 57899999999984
No 227
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=39.76 E-value=7.2 Score=39.42 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=13.6
Q ss_pred EEeeccCCCCCccee
Q 005960 118 VFAYGATGSGKTYTM 132 (667)
Q Consensus 118 IfaYGqTGSGKTyTm 132 (667)
++-||+.|+|||+.+
T Consensus 47 vlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLA 61 (274)
T ss_dssp EEEESSTTSCHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 889999999999865
No 228
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=39.12 E-value=8.6 Score=36.92 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=20.4
Q ss_pred chhhhhcCC-C--CEEEEeeccCCCCCccee
Q 005960 105 PLIPGIFHG-R--NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 105 plV~~vl~G-~--N~tIfaYGqTGSGKTyTm 132 (667)
+-+|.++.| . ...+.-+|++|+|||..+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 456666643 2 346778999999999875
No 229
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=38.99 E-value=22 Score=36.64 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=28.4
Q ss_pred cCcccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhh
Q 005960 590 FLNTASREELVELKGIGQRLADYICELRQSSPVKSLSDLEK 630 (667)
Q Consensus 590 ~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~ 630 (667)
.++..-..+|+.||||+++.|.+|++. |.++.+|.+
T Consensus 230 t~~e~~~~mL~~IpGVs~~~A~~I~~~-----ypTp~~L~~ 265 (311)
T 2ziu_A 230 TVREVFARQLMQISGVSGDKAAAVLEH-----YSTVSSLLQ 265 (311)
T ss_dssp BHHHHHHHHHTTBTTCCHHHHHHHHHH-----CSSHHHHHH
T ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHH-----CCCHHHHHH
Confidence 455566789999999999999999963 677766544
No 230
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=38.84 E-value=8.5 Score=39.70 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=18.0
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+..+++|.+ ++..++||+|||.+.
T Consensus 39 i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 39 IPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHhcCCc--EEEECCCCCcHHHHH
Confidence 445667766 567789999999864
No 231
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=37.30 E-value=9 Score=35.48 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=14.8
Q ss_pred EEEEeeccCCCCCcceec
Q 005960 116 ATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm~ 133 (667)
-.+.-.|++|||||+.+-
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 356778999999999864
No 232
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=37.20 E-value=9.4 Score=41.60 Aligned_cols=44 Identities=27% Similarity=0.476 Sum_probs=27.5
Q ss_pred eeceeeCCCCCchhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 83 QLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 83 ~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.||.++++ +.+.. ....+...+-.|.-..++-||++|+|||+..
T Consensus 24 ~l~~ivGq-----~~~~~-~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 24 NLAQYIGQ-----QHLLA-AGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp STTTCCSC-----HHHHS-TTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CHHHhCCc-----HHHHh-chHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 45666653 22332 1244444444555568999999999999865
No 233
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=37.12 E-value=26 Score=31.15 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=31.3
Q ss_pred CHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHHhccc
Q 005960 595 SREELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFGKA 645 (667)
Q Consensus 595 ~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~~~~ 645 (667)
-.-.|..|.|||...|..|++.=.-.|-+-+.| ++...+++|+.-+
T Consensus 14 v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~-----Lt~~ei~~l~~~i 59 (114)
T 3r8n_M 14 AVIALTSIYGVGKTRSKAILAAAGIAEDVKISE-----LSEGQIDTLRDEV 59 (114)
T ss_dssp HHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTT-----CCHHHHHHHHHHH
T ss_pred eHhhHhhhcCcCHHHHHHHHHHcCcCcccCccc-----CCHHHHHHHHHHH
Confidence 345689999999999999998753334443333 4556666666544
No 234
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=36.94 E-value=11 Score=29.73 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=22.6
Q ss_pred ccCcccCHHHHhcCCCCCHHH-HHHHHHHH
Q 005960 589 DFLNTASREELVELKGIGQRL-ADYICELR 617 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~-A~~Ii~~R 617 (667)
-.|=.|+.+||..+ ||++. |++|.++=
T Consensus 28 ~~i~~As~eeL~~v--ig~~~~A~~I~~~l 55 (63)
T 2a1j_A 28 AELAALSQDELTSI--LGNAANAKQLYDFI 55 (63)
T ss_dssp HHHHTCCHHHHHHH--HSCHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHH--cCchHHHHHHHHHH
Confidence 45568999999999 99999 99997643
No 235
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=36.56 E-value=12 Score=41.21 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=20.0
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCcce
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYT 131 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyT 131 (667)
.|..++.|.+--++..++||||||.+
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 44556656566778999999999986
No 236
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=36.47 E-value=25 Score=32.68 Aligned_cols=47 Identities=15% Similarity=0.332 Sum_probs=33.3
Q ss_pred ccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 593 TASREELVELKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 593 tA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
.-=.-.|..|.|||...|..|++.=.-.|- .++ -++...+++|+.-+
T Consensus 26 k~v~~ALt~I~GIG~~~A~~I~~~~gid~~------~r~g~Lt~~ei~~l~~~i 73 (146)
T 3u5c_S 26 IKIVYALTTIKGVGRRYSNLVCKKADVDLH------KRAGELTQEELERIVQIM 73 (146)
T ss_dssp SCTTTTGGGSTTCCHHHHHHHHHHHTCCTT------SCSSSCCHHHHHHHHHHH
T ss_pred cchHhhHhhhcCCCHHHHHHHHHHcCCCCC------ceeccCCHHHHHHHHHHH
Confidence 333456899999999999999987633333 334 35777888887655
No 237
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=36.28 E-value=8.9 Score=39.33 Aligned_cols=15 Identities=33% Similarity=0.729 Sum_probs=13.7
Q ss_pred EEeeccCCCCCccee
Q 005960 118 VFAYGATGSGKTYTM 132 (667)
Q Consensus 118 IfaYGqTGSGKTyTm 132 (667)
++-||+.|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999976
No 238
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=36.23 E-value=9.2 Score=40.96 Aligned_cols=25 Identities=48% Similarity=0.666 Sum_probs=18.9
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|..++.|.+ +++.++||||||...
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHHH
Confidence 3445678877 578889999999863
No 239
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=36.18 E-value=9.9 Score=39.65 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=18.9
Q ss_pred hhhcCC---CCEEEEe--eccCCCCCccee
Q 005960 108 PGIFHG---RNATVFA--YGATGSGKTYTM 132 (667)
Q Consensus 108 ~~vl~G---~N~tIfa--YGqTGSGKTyTm 132 (667)
..+..| ....++- ||+.|+|||+.+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 444555 4567888 999999999865
No 240
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=36.08 E-value=12 Score=35.46 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=14.1
Q ss_pred EEEEeeccCCCCCcceec
Q 005960 116 ATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm~ 133 (667)
..+.-+|++|+|||..+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 355668999999998753
No 241
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=35.32 E-value=9.7 Score=39.82 Aligned_cols=18 Identities=39% Similarity=0.645 Sum_probs=15.2
Q ss_pred CEEEEeeccCCCCCccee
Q 005960 115 NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 115 N~tIfaYGqTGSGKTyTm 132 (667)
...|+-||++|+|||+..
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 446889999999999864
No 242
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=35.25 E-value=21 Score=30.82 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.8
Q ss_pred ccCHHHHhcCCCCCHHHHHHHHHHHh
Q 005960 593 TASREELVELKGIGQRLADYICELRQ 618 (667)
Q Consensus 593 tA~~~eL~~lpGIG~~~A~~Ii~~R~ 618 (667)
=.+.+||..++|||++..++|-.|..
T Consensus 48 F~s~edL~~V~Gig~~~~e~l~~~l~ 73 (97)
T 3arc_U 48 YESVEDVLNIPGLTERQKQILRENLE 73 (97)
T ss_dssp CSSGGGGGGCTTCCHHHHHHHHHTGG
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHhc
Confidence 46789999999999999999888764
No 243
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=34.88 E-value=8.8 Score=38.47 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=13.6
Q ss_pred EEeeccCCCCCccee
Q 005960 118 VFAYGATGSGKTYTM 132 (667)
Q Consensus 118 IfaYGqTGSGKTyTm 132 (667)
++-||+.|+|||+..
T Consensus 45 ~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 45 MIISGMPGIGKTTSV 59 (323)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 888999999999865
No 244
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=34.84 E-value=12 Score=40.59 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.1
Q ss_pred hhcCCCCEEEEeeccCCCCCccee
Q 005960 109 GIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 109 ~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.+++|++..|...|++|+|||..|
T Consensus 25 ~vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 25 SVKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp TCC-CCCEEEEEECCTTSSHHHHH
T ss_pred EEecCCCEEEEEECCCCCcHHHHH
Confidence 368899999999999999999754
No 245
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=34.72 E-value=12 Score=33.33 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.3
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.|+-.|..|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999843
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=34.61 E-value=17 Score=34.50 Aligned_cols=19 Identities=37% Similarity=0.359 Sum_probs=14.9
Q ss_pred CCEEEEeeccCCCCCccee
Q 005960 114 RNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 114 ~N~tIfaYGqTGSGKTyTm 132 (667)
-...|.-.|++|||||+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456677899999999865
No 247
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=34.57 E-value=9.1 Score=38.67 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=26.4
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhhhhc--CCCCEEEEeeccCCCCCccee
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIF--HGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl--~G~N~tIfaYGqTGSGKTyTm 132 (667)
..||.+++.+. +.. .+..++..+. .+....|+-||++|+|||+..
T Consensus 9 ~~~~~~ig~~~-----~~~-~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 9 KTLDEYIGQER-----LKQ-KLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CSTTTCCSCHH-----HHH-HHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred ccHHHhhCHHH-----HHH-HHHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 46777776532 111 2333343332 234456888999999999864
No 248
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=34.32 E-value=7.1 Score=39.09 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=15.7
Q ss_pred hhcCCCCEEEEeeccCCCCCcceec
Q 005960 109 GIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 109 ~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
.+++|.++ +..++||+|||.+..
T Consensus 124 ~~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 124 EGLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHHhcCCe--EEEcCCCCCcHHHHH
Confidence 34445444 339999999998753
No 249
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=34.30 E-value=14 Score=35.60 Aligned_cols=17 Identities=47% Similarity=0.585 Sum_probs=13.7
Q ss_pred EEEeeccCCCCCcceec
Q 005960 117 TVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm~ 133 (667)
.+.-.|++|||||..+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 45568999999998763
No 250
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=34.23 E-value=48 Score=32.42 Aligned_cols=56 Identities=16% Similarity=0.325 Sum_probs=37.5
Q ss_pred ccCcccCHHHHhc-CC--CCCHHHHHHHHHHHhc-------C-CCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 589 DFLNTASREELVE-LK--GIGQRLADYICELRQS-------S-PVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 589 v~iNtA~~~eL~~-lp--GIG~~~A~~Ii~~R~~-------~-pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
-.|-.|+.++|.. |. |....+|++|.+.-+. . | ...++|..+ |||+++..-+.-..
T Consensus 68 ~~la~a~~e~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~p-~~~~~L~~lpGIG~~TA~~il~~~ 135 (221)
T 1kea_A 68 EDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVP-RNRKAILDLPGVGKYTCAAVMCLA 135 (221)
T ss_dssp HHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTTSCC-SCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhCCCch-HHHHHHHhCCCCcHHHHHHHHHHh
Confidence 3455678888854 34 5555566666654331 2 3 568999999 99999988776554
No 251
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=34.17 E-value=19 Score=30.65 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=27.9
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhh---c-CCCHHHHHHHhc
Q 005960 597 EELVELKGIGQRLADYICELRQSSPVKSLSDLEK---I-GLSTKQVYNLFG 643 (667)
Q Consensus 597 ~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~---v-Gi~~~~~~~l~~ 643 (667)
.++..|||||+.++++..+ .+|..--.|.- + +-....+..|..
T Consensus 18 K~V~evpGIG~~~~~~L~~----~Gf~kAy~lLGqFL~l~kd~~~F~~WLk 64 (89)
T 1ci4_A 18 KPVGSLAGIGEVLGKKLEE----RGFDKAYVVLGQFLVLKKDEDLFREWLK 64 (89)
T ss_dssp CCGGGSTTCCHHHHHHHHH----TTCCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCcccCCCcCHHHHHHHHH----cCccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678899999999998877 26766555532 1 444444444443
No 252
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=34.07 E-value=8.5 Score=43.81 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHhc--C-CCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 602 LKGIGQRLADYICELRQS--S-PVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 602 lpGIG~~~A~~Ii~~R~~--~-pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
|||||++.|+.++++=.. . -=.+.+||..| |||++..+.|....
T Consensus 534 Ip~VG~~~ak~La~~Fgsle~L~~As~eeL~~I~GIG~~~A~sI~~ff 581 (615)
T 3sgi_A 534 IRHVGPTAARALATEFGSLDAIAAASTDQLAAVEGVGPTIAAAVTEWF 581 (615)
T ss_dssp ------------------------------------------------
T ss_pred CCCCCHHHHHHHHHHcCCHHHHHhCCHHHHhhCCCCCHHHHHHHHHHH
Confidence 578888888777543110 0 12356788888 99998888776544
No 253
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=33.85 E-value=39 Score=34.94 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=31.4
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhh--------c-CCCHHHHHHHhcc
Q 005960 597 EELVELKGIGQRLADYICELRQSSPVKSLSDLEK--------I-GLSTKQVYNLFGK 644 (667)
Q Consensus 597 ~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~--------v-Gi~~~~~~~l~~~ 644 (667)
..|..|||||++.++++- ++++++++||.+ + |+++...+++...
T Consensus 157 ~pL~Qlp~i~~~~~~~l~----~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~ 209 (328)
T 3im1_A 157 NPLRQIPHFNNKILEKCK----EINVETVYDIMALEDEERDEILTLTDSQLAQVAAF 209 (328)
T ss_dssp CGGGGSTTCCHHHHHHHH----HTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHH
T ss_pred CceeCCCCCCHHHHHHHH----hCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHH
Confidence 368999999999998753 237888887754 3 6777666655443
No 254
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=33.85 E-value=11 Score=39.36 Aligned_cols=18 Identities=39% Similarity=0.632 Sum_probs=14.8
Q ss_pred CEEEEeeccCCCCCccee
Q 005960 115 NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 115 N~tIfaYGqTGSGKTyTm 132 (667)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 346788999999999864
No 255
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=33.84 E-value=14 Score=41.60 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=19.1
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+|..++.|.+ +++.++||+|||.+.
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHHH
Confidence 3455677887 577899999999753
No 256
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=33.60 E-value=30 Score=32.37 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=33.5
Q ss_pred ccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHHhccc
Q 005960 593 TASREELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFGKA 645 (667)
Q Consensus 593 tA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~~~~ 645 (667)
.-=.-.|..|.|||...|..|++.=.-.|-+-+. -+++..+++|+.-+
T Consensus 24 k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g-----~Lt~~ei~~l~~~i 71 (152)
T 3iz6_M 24 QKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAG-----ELSAEEMDRLMAVV 71 (152)
T ss_dssp SBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTT-----TSCHHHHHHHHHHH
T ss_pred cEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeC-----cCCHHHHHHHHHHH
Confidence 3334578999999999999999876433433333 35777777777655
No 257
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=33.54 E-value=13 Score=40.28 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=22.5
Q ss_pred chhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceec
Q 005960 94 SVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 94 sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
.|.+.+.. ++..+..|- ..++..|..|||||+++.
T Consensus 29 ~Q~~av~~----~~~~i~~~~-~~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 29 GQKNAFNI----VMKAIKEKK-HHVTINGPAGTGATTLTK 63 (459)
T ss_dssp HHHHHHHH----HHHHHHSSS-CEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHH----HHHHHhcCC-CEEEEEeCCCCCHHHHHH
Confidence 55555543 333333333 378899999999998763
No 258
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=33.28 E-value=20 Score=37.68 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=20.9
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCCHHHHhh
Q 005960 601 ELKGIGQRLADYICELRQSSPVKSLSDLEK 630 (667)
Q Consensus 601 ~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~ 630 (667)
.|||||+|+|.++|.. |.+++.+.+
T Consensus 236 gipGiG~KtA~kll~~-----~gsle~i~~ 260 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQK-----HKSIEEIVR 260 (341)
T ss_dssp CCTTCCHHHHHHHHHH-----HCSHHHHHH
T ss_pred CCCCccHHHHHHHHHH-----cCCHHHHHH
Confidence 4799999999999974 778888755
No 259
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=33.27 E-value=35 Score=39.00 Aligned_cols=46 Identities=30% Similarity=0.427 Sum_probs=35.5
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHh--------hc-CCCHHHHHHHhccc
Q 005960 596 REELVELKGIGQRLADYICELRQSSPVKSLSDLE--------KI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~--------~v-Gi~~~~~~~l~~~~ 645 (667)
.-.|..|||||..+|++.. +.+|+++.||. .+ |++.+.++.+...+
T Consensus 645 ~~~L~qlp~v~~~rar~L~----~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~~~~ 699 (720)
T 2zj8_A 645 LIPLMQLPLVGRRRARALY----NSGFRSIEDISQARPEELLKIEGIGVKTVEAIFKFL 699 (720)
T ss_dssp GGGGTTSTTCCHHHHHHHH----TTTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred chhhhhCCCCCHHHHHHHH----HcCCCCHHHHHhCCHHHHHHhHhHHHHHHHHHHHhc
Confidence 3467899999999998875 34899999984 34 68888888776544
No 260
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=33.16 E-value=13 Score=40.29 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=18.1
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
|..++.|.+ ++..++||||||.+.
T Consensus 16 i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 16 AQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCChHHHHH
Confidence 445567777 567889999999874
No 261
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=32.65 E-value=13 Score=35.06 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=20.5
Q ss_pred chhhhhcC-CCC--EEEEeeccCCCCCccee
Q 005960 105 PLIPGIFH-GRN--ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 105 plV~~vl~-G~N--~tIfaYGqTGSGKTyTm 132 (667)
+-++.++. |+. ..+.-+|++|+|||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 44566664 443 47889999999999865
No 262
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=32.48 E-value=23 Score=30.90 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 606 GQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 606 G~~~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
-.++|+.|+++.+..++-++.||.+. |+++.++-++-.++
T Consensus 23 e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkl 63 (111)
T 2o3f_A 23 ERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSL 63 (111)
T ss_dssp HHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHHHHc
Confidence 34566666666655566666666665 66666655544433
No 263
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=32.44 E-value=15 Score=34.84 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=19.9
Q ss_pred chhhhhcC-CC--CEEEEeeccCCCCCccee
Q 005960 105 PLIPGIFH-GR--NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 105 plV~~vl~-G~--N~tIfaYGqTGSGKTyTm 132 (667)
+-+|.++. |. ...+.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 44555663 33 346778999999999875
No 264
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=32.42 E-value=27 Score=32.71 Aligned_cols=46 Identities=24% Similarity=0.384 Sum_probs=32.3
Q ss_pred CHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHHhccc
Q 005960 595 SREELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFGKA 645 (667)
Q Consensus 595 ~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~~~~ 645 (667)
-.-.|..|.|||...|..|++.=.-.|-+-+. -+++..+++|+.-+
T Consensus 28 v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~-----~Lt~~ei~~l~~~i 73 (155)
T 2xzm_M 28 TPIALTGIRGIGRRFAYIICKVLKIDPNARAG-----LLTEDQCNKITDLI 73 (155)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSS-----CSCHHHHHHHHHHH
T ss_pred EEEeeecccccCHHHHHHHHHHcCCCcccccc-----cCCHHHHHHHHHHH
Confidence 34578999999999999999876433443333 35667777776554
No 265
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=32.19 E-value=11 Score=42.70 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.4
Q ss_pred EEEEeeccCCCCCcceec
Q 005960 116 ATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm~ 133 (667)
..++..|++|||||+|+.
T Consensus 165 ~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVA 182 (608)
T ss_dssp SEEEEECCTTSTHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHH
Confidence 467889999999999874
No 266
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=31.96 E-value=12 Score=38.09 Aligned_cols=18 Identities=22% Similarity=0.325 Sum_probs=14.9
Q ss_pred CEEEEeeccCCCCCccee
Q 005960 115 NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 115 N~tIfaYGqTGSGKTyTm 132 (667)
...++-||++|+|||+++
T Consensus 48 ~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CSEEEECSSTTSSHHHHH
T ss_pred CeEEEeeCcCCCCHHHHH
Confidence 346788899999999975
No 267
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=31.92 E-value=12 Score=38.45 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=16.5
Q ss_pred hhcCCCCEEEEeeccCCCCCccee
Q 005960 109 GIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 109 ~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.+++|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999764
No 268
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=31.92 E-value=12 Score=34.88 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.0
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.|.-.|++|||||..+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999865
No 269
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=31.90 E-value=12 Score=43.05 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=20.0
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCcceec
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
+++.+.......++-||++|+|||+.+.
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 4444444455567889999999999764
No 270
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=31.88 E-value=14 Score=42.87 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=20.4
Q ss_pred chhhhhcCCCCEEEEeeccCCCCCcceec
Q 005960 105 PLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 105 plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
.+++.+..+....++-||++|+|||....
T Consensus 191 ~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred HHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 34444444555568899999999998653
No 271
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=31.82 E-value=13 Score=36.13 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=17.1
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+++++-.|--. .-.|+.|||||+.+
T Consensus 15 ~l~~i~~Ge~~--~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTIV--FGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSEE--EEECCTTSSTTHHH
T ss_pred HHHhccCCCEE--EEECCCCCCHHHHH
Confidence 34444455544 44899999999876
No 272
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=31.68 E-value=13 Score=35.60 Aligned_cols=27 Identities=33% Similarity=0.482 Sum_probs=18.7
Q ss_pred hhhhhcCC-C--CEEEEeeccCCCCCccee
Q 005960 106 LIPGIFHG-R--NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl~G-~--N~tIfaYGqTGSGKTyTm 132 (667)
-+|.++.| + ...+.-+|++|+|||..+
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 34555533 2 346778999999999874
No 273
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=31.51 E-value=14 Score=39.97 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=17.7
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+..++.|.+ ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 334567776 467799999999873
No 274
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=31.37 E-value=46 Score=27.15 Aligned_cols=30 Identities=10% Similarity=0.319 Sum_probs=23.7
Q ss_pred CcccCHHHHhcCCCCCHHHHHHHHHHHhcC
Q 005960 591 LNTASREELVELKGIGQRLADYICELRQSS 620 (667)
Q Consensus 591 iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~ 620 (667)
+-.-+.++|..++|+|++-.+.|.+.=++.
T Consensus 35 L~~~s~~dLlki~n~G~kSl~EI~~~L~~~ 64 (73)
T 1z3e_B 35 LANKTEEDMMKVRNLGRKSLEEVKAKLEEL 64 (73)
T ss_dssp HHTSCHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 335688999999999999999887765444
No 275
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=31.06 E-value=8 Score=39.87 Aligned_cols=24 Identities=42% Similarity=0.600 Sum_probs=18.0
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+..++.|.+ ++..++||+|||.+.
T Consensus 52 i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 52 IMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHHH
Confidence 445566766 467899999999873
No 276
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=31.01 E-value=12 Score=38.54 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.3
Q ss_pred CEEEEeeccCCCCCccee
Q 005960 115 NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 115 N~tIfaYGqTGSGKTyTm 132 (667)
...++-||+.|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346889999999999875
No 277
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=30.93 E-value=12 Score=42.54 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=14.0
Q ss_pred EEEeeccCCCCCcceec
Q 005960 117 TVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm~ 133 (667)
..+-.|+.|||||+|+.
T Consensus 207 ~~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVV 223 (646)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred ceEEECCCCCCHHHHHH
Confidence 34678999999999974
No 278
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=30.85 E-value=13 Score=35.46 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=13.5
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.|.-.|++|||||.++
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5667899999999875
No 279
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.84 E-value=35 Score=31.77 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=32.7
Q ss_pred ccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHHhccc
Q 005960 593 TASREELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFGKA 645 (667)
Q Consensus 593 tA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~~~~ 645 (667)
.-=.-.|..|.|||...|..|++.=.-.|-+-+.| +++..+++|+.-+
T Consensus 19 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~-----Lt~~ei~~i~~~i 66 (148)
T 3j20_O 19 KQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGY-----LTDEQVKKIEEIL 66 (148)
T ss_dssp SCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTB-----CCHHHHHHHHHHH
T ss_pred CEehhhhhhccCcCHHHHHHHHHHhCCCCCceecc-----CCHHHHHHHHHHH
Confidence 33345789999999999999998764334433333 4666677766654
No 280
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=30.65 E-value=12 Score=38.31 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=15.9
Q ss_pred CCCEEEEeeccCCCCCccee
Q 005960 113 GRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 113 G~N~tIfaYGqTGSGKTyTm 132 (667)
.....|+-||++|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 34567889999999999853
No 281
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=30.49 E-value=26 Score=30.52 Aligned_cols=47 Identities=11% Similarity=0.132 Sum_probs=36.7
Q ss_pred hcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhcccc
Q 005960 600 VELKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKAA 646 (667)
Q Consensus 600 ~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 646 (667)
..|+.--.++|+.|+++.+..++-++.||.+. |+++.++-++-.++-
T Consensus 13 ~~lt~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkLG 60 (107)
T 3iwf_A 13 PYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVT 60 (107)
T ss_dssp GGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHhC
Confidence 33444457889999999888899999999987 999988877766553
No 282
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=30.44 E-value=14 Score=39.59 Aligned_cols=22 Identities=27% Similarity=0.167 Sum_probs=16.4
Q ss_pred hhcCCCCEEEEeeccCCCCCccee
Q 005960 109 GIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 109 ~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.+++|.+ ++..++||+|||.+.
T Consensus 104 ~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 104 RWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHhcCC--EEEEeCCCCCHHHHH
Confidence 4455544 677899999999975
No 283
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=30.27 E-value=16 Score=34.53 Aligned_cols=19 Identities=26% Similarity=0.135 Sum_probs=15.4
Q ss_pred CCEEEEeeccCCCCCccee
Q 005960 114 RNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 114 ~N~tIfaYGqTGSGKTyTm 132 (667)
....|...|..|||||+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SSEEEEEEECTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3457888999999999865
No 284
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=30.26 E-value=16 Score=33.11 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=13.6
Q ss_pred EEEEeeccCCCCCcce
Q 005960 116 ATVFAYGATGSGKTYT 131 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyT 131 (667)
..|+..|..|||||+.
T Consensus 3 ~~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEecCCCCCHHHH
Confidence 3578899999999984
No 285
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=30.24 E-value=14 Score=34.44 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.+.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999865
No 286
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=30.21 E-value=55 Score=32.17 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=37.9
Q ss_pred ccCcccCHHHHhc-CC--CCCHHHHHHHHHHHhc------CCC-CCHHHHhhc-CCCHHHHHHHhccc
Q 005960 589 DFLNTASREELVE-LK--GIGQRLADYICELRQS------SPV-KSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 589 v~iNtA~~~eL~~-lp--GIG~~~A~~Ii~~R~~------~pf-~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
-.|=.|+.++|.. |. |....+|++|.+.-+. ..+ ...++|..+ |||+++..-+.-..
T Consensus 66 ~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a 133 (226)
T 1orn_A 66 HDYIAVPLEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVA 133 (226)
T ss_dssp HHHHSSCHHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHCCCccHHHHHHHHHHH
Confidence 3445678888755 44 4445677777655432 112 568999999 99999988877543
No 287
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=30.21 E-value=13 Score=42.10 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=18.1
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
|+.+++|.+ ++..++||+|||.+.
T Consensus 16 i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 16 AQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 344566776 578899999999875
No 288
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=30.17 E-value=11 Score=38.23 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=16.7
Q ss_pred hhhcCCCCEEEEeeccCCCCCccee
Q 005960 108 PGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 108 ~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
..+++|.. -++..++||||||.+.
T Consensus 38 ~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 38 PLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHhCCCC-CEEEECCCCChHHHHH
Confidence 34455532 3567899999999874
No 289
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=29.58 E-value=11 Score=39.68 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=15.1
Q ss_pred CCCCEEEEeeccCCCCCcceec
Q 005960 112 HGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 112 ~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
.+.| ++..|++|||||+++.
T Consensus 34 ~~~~--~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 34 TNSN--WTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCCC--EEEECCTTSSHHHHHH
T ss_pred ccCc--eEEEcCCCCCHHHHHH
Confidence 4445 4667999999999863
No 290
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=29.58 E-value=13 Score=37.16 Aligned_cols=19 Identities=47% Similarity=0.639 Sum_probs=16.5
Q ss_pred CEEEEeeccCCCCCcceec
Q 005960 115 NATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 115 N~tIfaYGqTGSGKTyTm~ 133 (667)
-..||..|..|+||||+|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 3568999999999999985
No 291
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=29.52 E-value=19 Score=42.20 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=30.7
Q ss_pred eeeeceeeCCCCCchhHHHHhhccchhh-hhcC----CCCEEEEeeccCCCCCccee
Q 005960 81 CYQLDSFFGQEDESVSKIFYSEVNPLIP-GIFH----GRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 81 ~F~FD~Vf~~~~~sQ~~Vf~~~v~plV~-~vl~----G~N~tIfaYGqTGSGKTyTm 132 (667)
.+.||.+.+.+. .-+.+.+....|+.. .++. .....|+-||++|+|||+.+
T Consensus 200 ~v~~~di~G~~~-~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 200 EVGYDDVGGCRK-QLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCSG-GGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCHHHhCChHH-HHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 478888888764 334444433332221 1222 22346889999999999865
No 292
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=29.42 E-value=18 Score=40.16 Aligned_cols=26 Identities=35% Similarity=0.542 Sum_probs=19.0
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCcce
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYT 131 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyT 131 (667)
+|..++.|-+--++..++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 34455655455678899999999986
No 293
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=29.33 E-value=11 Score=35.68 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=14.5
Q ss_pred EEEeeccCCCCCcceec
Q 005960 117 TVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm~ 133 (667)
.++-||+.|+|||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999999865
No 294
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=29.29 E-value=14 Score=37.33 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=15.6
Q ss_pred CCEEEEeeccCCCCCccee
Q 005960 114 RNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 114 ~N~tIfaYGqTGSGKTyTm 132 (667)
|+-++...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 3567888999999999865
No 295
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=28.99 E-value=17 Score=33.05 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=13.8
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.|+..|..|||||+..
T Consensus 5 ~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIV 20 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999853
No 296
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=28.87 E-value=17 Score=33.33 Aligned_cols=15 Identities=33% Similarity=0.660 Sum_probs=12.9
Q ss_pred EEEeeccCCCCCcce
Q 005960 117 TVFAYGATGSGKTYT 131 (667)
Q Consensus 117 tIfaYGqTGSGKTyT 131 (667)
.|+..|.+|||||+.
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577899999999974
No 297
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=28.85 E-value=14 Score=34.55 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=12.5
Q ss_pred EEeeccCCCCCccee
Q 005960 118 VFAYGATGSGKTYTM 132 (667)
Q Consensus 118 IfaYGqTGSGKTyTm 132 (667)
+.-.|++|||||.++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445899999999875
No 298
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=28.81 E-value=14 Score=34.14 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.1
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
..|.-.|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778999999999864
No 299
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=28.77 E-value=22 Score=32.16 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=31.1
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHHhccc
Q 005960 596 REELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFGKA 645 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~~~~ 645 (667)
.-.|..|.|||...|..|++.=.-.|..-+.|| ++..+++|+..+
T Consensus 16 ~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~L-----t~~ei~~l~~~i 60 (126)
T 2vqe_M 16 DVALTYIYGIGKARAKEALEKTGINPATRVKDL-----TEAEVVRLREYV 60 (126)
T ss_dssp HHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGC-----CHHHHHHHHHHH
T ss_pred eeehhccccccHHHHHHHHHHcCCCcccccCcC-----CHHHHHHHHHHH
Confidence 457899999999999999876533355544444 566666666544
No 300
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=28.69 E-value=15 Score=36.35 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.8
Q ss_pred CEEEEeeccCCCCCcceec
Q 005960 115 NATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 115 N~tIfaYGqTGSGKTyTm~ 133 (667)
...++-||..|+|||..++
T Consensus 12 G~i~litG~mGsGKTT~ll 30 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELI 30 (223)
T ss_dssp CEEEEEECSTTSCHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHH
Confidence 3567889999999999865
No 301
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=28.67 E-value=14 Score=34.82 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=12.7
Q ss_pred EEeeccCCCCCccee
Q 005960 118 VFAYGATGSGKTYTM 132 (667)
Q Consensus 118 IfaYGqTGSGKTyTm 132 (667)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999975
No 302
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=28.58 E-value=13 Score=39.77 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=15.1
Q ss_pred CEEEEeeccCCCCCccee
Q 005960 115 NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 115 N~tIfaYGqTGSGKTyTm 132 (667)
+.-++.+|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 445688999999999976
No 303
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=28.14 E-value=23 Score=36.89 Aligned_cols=18 Identities=39% Similarity=0.504 Sum_probs=15.5
Q ss_pred CEEEEeeccCCCCCccee
Q 005960 115 NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 115 N~tIfaYGqTGSGKTyTm 132 (667)
...|.-.|++|+|||.++
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457788999999999986
No 304
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=28.06 E-value=17 Score=33.37 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=13.4
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.|+..|..|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4678999999999854
No 305
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=27.62 E-value=15 Score=41.65 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.6
Q ss_pred EEEeeccCCCCCcceec
Q 005960 117 TVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm~ 133 (667)
.++..|+.|||||+|+.
T Consensus 197 ~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred CeEEECCCCCCHHHHHH
Confidence 46779999999999974
No 306
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=27.57 E-value=15 Score=34.90 Aligned_cols=16 Identities=31% Similarity=0.573 Sum_probs=13.3
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.+.-.|++|||||..+
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567899999999876
No 307
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=27.22 E-value=15 Score=38.41 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=16.7
Q ss_pred hhhcCCCCEEEEeeccCCCCCcceec
Q 005960 108 PGIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 108 ~~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
..+++| -++..++||+|||.+..
T Consensus 19 ~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 19 AKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHhhC---CEEEEcCCCCCHHHHHH
Confidence 345556 44667999999998764
No 308
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=26.40 E-value=30 Score=40.67 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=44.0
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhh-hhcCCCC----EEEEeeccCCCCCcceecc------C-----------CCCC
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIP-GIFHGRN----ATVFAYGATGSGKTYTMQG------S-----------EERP 139 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~-~vl~G~N----~tIfaYGqTGSGKTyTm~G------~-----------~~~~ 139 (667)
..||.|-+-+. .-+++.+.+.-||-. .++.++. ..|+-||+.|+|||...-- - ....
T Consensus 201 v~~~dIgGl~~-~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 201 VGYDDIGGCRK-QLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp CCGGGCCSCCT-THHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CChhhhcCHHH-HHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 56777777654 334454444444432 2455443 4699999999999976421 0 1234
Q ss_pred CChHHHHHHHHhhhccC
Q 005960 140 GLMPLAMSKILSICQST 156 (667)
Q Consensus 140 GLipral~~LF~~~~~~ 156 (667)
|-....++.+|+.+...
T Consensus 280 gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKN 296 (806)
T ss_dssp THHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 55566677777766543
No 309
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=26.38 E-value=17 Score=40.07 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=15.0
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
..++-||++|+|||++.
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57888999999999875
No 310
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A
Probab=26.32 E-value=58 Score=33.91 Aligned_cols=32 Identities=22% Similarity=0.115 Sum_probs=25.6
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCCHHHHhh-c-CCCHHH
Q 005960 601 ELKGIGQRLADYICELRQSSPVKSLSDLEK-I-GLSTKQ 637 (667)
Q Consensus 601 ~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~-v-Gi~~~~ 637 (667)
.+||||+|.|.++|. -|.+++.+.+ . .+..+.
T Consensus 241 gv~GiG~ktA~kli~-----~~gsle~il~~~~~~~~~~ 274 (340)
T 1b43_A 241 GIKGIGLKKALEIVR-----HSKDPLAKFQKQSDVDLYA 274 (340)
T ss_dssp CSTTCCHHHHHHHHH-----TCSSGGGGTGGGCSSCHHH
T ss_pred CCCCccHHHHHHHHH-----HcCCHHHHHcCCCCccHHH
Confidence 799999999999997 3788898866 4 776543
No 311
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=26.32 E-value=17 Score=33.59 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=13.4
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.+.-.|+.|||||..+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4667899999999875
No 312
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=26.25 E-value=77 Score=32.51 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=36.8
Q ss_pred cCcccCHHHHhc-CCCCCH-HHHHHHHHHHh-------cC-CCCCHHHHhh-c-CCCHHHHHHHhccc
Q 005960 590 FLNTASREELVE-LKGIGQ-RLADYICELRQ-------SS-PVKSLSDLEK-I-GLSTKQVYNLFGKA 645 (667)
Q Consensus 590 ~iNtA~~~eL~~-lpGIG~-~~A~~Ii~~R~-------~~-pf~~~~dL~~-v-Gi~~~~~~~l~~~~ 645 (667)
.|-.|+.++|.. |.|+|= .+|++|.+.=+ .. | ...++|.. + |||+++..-+....
T Consensus 83 ~La~a~~eel~~~ir~lG~~~KA~~L~~~A~~i~~~~~g~~p-~~~~~Ll~~LpGIG~kTA~~iL~~a 149 (287)
T 3n5n_X 83 DLASASLEEVNQLWAGLGYYSRGRRLQEGARKVVEELGGHMP-RTAETLQQLLPGVGRYTAGAIASIA 149 (287)
T ss_dssp HHHTSCHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSTTCCC-SSHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCc-HHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 345678888855 577772 25666554322 11 3 47999998 9 99999998877554
No 313
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=26.23 E-value=18 Score=33.73 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=13.3
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999999864
No 314
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=26.18 E-value=24 Score=39.25 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=14.7
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
..|...|++|||||.++
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 46778899999999987
No 315
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=26.03 E-value=18 Score=37.23 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=14.9
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
..+.-.|++|||||.++
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 46778899999999987
No 316
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=25.88 E-value=23 Score=38.20 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=16.3
Q ss_pred hcCCCCEEEEeeccCCCCCccee
Q 005960 110 IFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 110 vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+++|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 455665 578899999999984
No 317
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=25.66 E-value=12 Score=43.95 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=20.4
Q ss_pred chhhhhcCCCCEEEEeeccCCCCCcceec
Q 005960 105 PLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 105 plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
.+++.+..+....++-||++|+|||+.+.
T Consensus 181 ~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 181 RVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp HHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred HHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 34444444554557889999999999764
No 318
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=25.63 E-value=22 Score=40.22 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=16.8
Q ss_pred hhhcCCCCEEEEeeccCCCCCcce
Q 005960 108 PGIFHGRNATVFAYGATGSGKTYT 131 (667)
Q Consensus 108 ~~vl~G~N~tIfaYGqTGSGKTyT 131 (667)
..++.|.| ++..++||+|||..
T Consensus 23 ~~~l~g~~--~iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 23 LPAMKGKN--TIICAPTGCGKTFV 44 (696)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHcCCC--EEEEcCCCchHHHH
Confidence 34556777 46888999999985
No 319
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=25.59 E-value=60 Score=26.93 Aligned_cols=30 Identities=10% Similarity=0.319 Sum_probs=24.0
Q ss_pred CcccCHHHHhcCCCCCHHHHHHHHHHHhcC
Q 005960 591 LNTASREELVELKGIGQRLADYICELRQSS 620 (667)
Q Consensus 591 iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~ 620 (667)
|=.-+.++|..++|+|++-.+.|.+.=++.
T Consensus 42 L~~~se~dLlki~n~G~kSl~EI~~~L~e~ 71 (79)
T 3gfk_B 42 LANKTEEDMMKVRNLGRKSLEEVKAKLEEL 71 (79)
T ss_dssp HTTCCHHHHTTSTTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHcCCCCHhHHHHHHHHHHHc
Confidence 335688999999999999999988765444
No 320
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=25.49 E-value=19 Score=37.07 Aligned_cols=17 Identities=41% Similarity=0.628 Sum_probs=14.1
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
..|.-.|++|||||.++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 45666799999999987
No 321
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=25.43 E-value=51 Score=37.50 Aligned_cols=31 Identities=29% Similarity=0.530 Sum_probs=25.4
Q ss_pred CHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHh
Q 005960 595 SREELVELKGIGQRLADYICELRQSSPVKSLSDLE 629 (667)
Q Consensus 595 ~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~ 629 (667)
..-.|..|||||+.+|+++- +.+|++++||.
T Consensus 655 e~~~L~qlp~i~~~rar~L~----~~g~~s~~~l~ 685 (715)
T 2va8_A 655 ELLELVQISGVGRKRARLLY----NNGIKELGDVV 685 (715)
T ss_dssp GGHHHHTSTTCCHHHHHHHH----HTTCCSHHHHH
T ss_pred hhcchhhCCCCCHHHHHHHH----HcCCCCHHHHh
Confidence 34568999999999999874 33899999994
No 322
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=25.38 E-value=66 Score=27.15 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=23.6
Q ss_pred ccCHHHHhcCCCCCHHHHHHHHHHHhcC
Q 005960 593 TASREELVELKGIGQRLADYICELRQSS 620 (667)
Q Consensus 593 tA~~~eL~~lpGIG~~~A~~Ii~~R~~~ 620 (667)
.-+.++|..++|+|++..+.|.+.=++.
T Consensus 40 ~~se~dLlki~n~G~KSl~EI~~~L~~~ 67 (86)
T 3k4g_A 40 QRTEVELLXTPNLGXXSLTEIXDVLASR 67 (86)
T ss_dssp HSCHHHHHTSTTCCHHHHHHHHHHHHTT
T ss_pred hCCHHHHhhccccCcccHHHHHHHHHHc
Confidence 5688999999999999999998776555
No 323
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=25.17 E-value=21 Score=34.34 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=9.0
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.|.-.|++|||||..+
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999875
No 324
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=24.99 E-value=1e+02 Score=32.38 Aligned_cols=56 Identities=14% Similarity=0.259 Sum_probs=36.9
Q ss_pred cCcccCHHHHhc-CCCCCH-HHHHHHHHHHh-------cCCCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 590 FLNTASREELVE-LKGIGQ-RLADYICELRQ-------SSPVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 590 ~iNtA~~~eL~~-lpGIG~-~~A~~Ii~~R~-------~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
.|=.|+.++|.. +.|+|= .+|++|.+.-+ ..--...++|..+ |||+++..-+....
T Consensus 73 ~la~a~~~~l~~~i~~~G~~~ra~~l~~~a~~~~~~~~g~~p~~~~~L~~l~GIG~~tA~~il~~~ 138 (369)
T 3fsp_A 73 ALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLA 138 (369)
T ss_dssp HHHTSCHHHHHHTTTTSSCTHHHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCCChhHHHHHhcCCCcCHHHHHHHHHHH
Confidence 344678888855 566662 14555554332 1111578999999 99999998877664
No 325
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=24.94 E-value=19 Score=34.14 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=14.1
Q ss_pred hhcCCCCEEEEeeccCCCCCccee
Q 005960 109 GIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 109 ~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.+-.|- .+.-.|++|||||..+
T Consensus 16 ~i~~Ge--i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGR--VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCC--EEEEECSTTSSHHHHH
T ss_pred CCCCCC--EEEEECCCCCCHHHHH
Confidence 334443 3455799999999875
No 326
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=24.89 E-value=21 Score=39.47 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=18.3
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCcceec
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
++..+..|. -|+-||++|+|||+...
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHHH
Confidence 333444453 57889999999998753
No 327
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=24.85 E-value=22 Score=41.08 Aligned_cols=17 Identities=35% Similarity=0.460 Sum_probs=14.8
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
+.++-||++|+|||+..
T Consensus 522 ~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEEESCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 37899999999999864
No 328
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=24.65 E-value=16 Score=40.94 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=15.6
Q ss_pred CEEEEeeccCCCCCcceec
Q 005960 115 NATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 115 N~tIfaYGqTGSGKTyTm~ 133 (667)
++.++..|..|||||+|+.
T Consensus 22 ~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp SSCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHH
Confidence 3457788999999999974
No 329
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=24.62 E-value=22 Score=32.18 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=13.3
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.|.-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778999999999853
No 330
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=24.61 E-value=18 Score=40.12 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=14.2
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.|+-||++|+|||+.+
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3899999999999875
No 331
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=24.33 E-value=22 Score=32.47 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCcce
Q 005960 117 TVFAYGATGSGKTYT 131 (667)
Q Consensus 117 tIfaYGqTGSGKTyT 131 (667)
.|+-.|..|||||+.
T Consensus 5 ~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 5 VVVVTGVPGVGSTTS 19 (192)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999984
No 332
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=24.24 E-value=24 Score=33.15 Aligned_cols=16 Identities=38% Similarity=0.499 Sum_probs=13.5
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.|+-.|.+|||||...
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999999853
No 333
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=24.16 E-value=38 Score=35.35 Aligned_cols=15 Identities=27% Similarity=0.601 Sum_probs=7.4
Q ss_pred HhcCCCCCHHHHHHH
Q 005960 599 LVELKGIGQRLADYI 613 (667)
Q Consensus 599 L~~lpGIG~~~A~~I 613 (667)
|..|||||+..+++.
T Consensus 37 l~~l~Gi~~~~~~kL 51 (349)
T 1pzn_A 37 IEDLPGVGPATAEKL 51 (349)
T ss_dssp SSCCTTCCHHHHHHH
T ss_pred HHHcCCCCHHHHHHH
Confidence 444455555555443
No 334
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A
Probab=24.13 E-value=36 Score=35.46 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=20.9
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCCHHHHhh
Q 005960 601 ELKGIGQRLADYICELRQSSPVKSLSDLEK 630 (667)
Q Consensus 601 ~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~ 630 (667)
.+||||+|.|.++|.. |.+++.+.+
T Consensus 239 Gv~GiG~KtA~kLl~~-----~gsle~i~~ 263 (336)
T 1rxw_A 239 GVKGVGVKKALNYIKT-----YGDIFRALK 263 (336)
T ss_dssp CCTTCCHHHHHHHHHH-----HSSHHHHHH
T ss_pred CCCCcCHHHHHHHHHH-----cCCHHHHHH
Confidence 6899999999999973 568888755
No 335
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=24.05 E-value=25 Score=31.67 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=20.1
Q ss_pred hhhhhcC-CCCEEEEeeccCCCCCccee
Q 005960 106 LIPGIFH-GRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl~-G~N~tIfaYGqTGSGKTyTm 132 (667)
++..++. .....|...|..|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 4444555 56678899999999999754
No 336
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=23.85 E-value=18 Score=36.53 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=14.9
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
..++-+|+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 57888999999999865
No 337
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=23.72 E-value=25 Score=31.52 Aligned_cols=16 Identities=13% Similarity=0.019 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999853
No 338
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=23.68 E-value=84 Score=24.94 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhc
Q 005960 609 LADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFG 643 (667)
Q Consensus 609 ~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~ 643 (667)
++++|-+.|+.. +.+||.+. ||+...+.+|..
T Consensus 17 ~g~~l~~~R~~~---sq~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 17 LGELLRSARGDM---SMVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp HHHHHHHHHTTS---CHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHC---CHHHHHHHhCCCHHHHHHHHc
Confidence 445555556544 66666654 666666666554
No 339
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=23.58 E-value=24 Score=34.88 Aligned_cols=15 Identities=47% Similarity=0.538 Sum_probs=12.8
Q ss_pred EEEeeccCCCCCcce
Q 005960 117 TVFAYGATGSGKTYT 131 (667)
Q Consensus 117 tIfaYGqTGSGKTyT 131 (667)
.|+-.|++|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 477899999999973
No 340
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=23.52 E-value=26 Score=40.34 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=15.1
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
+.++-||++|+|||+..
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999864
No 341
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=23.51 E-value=17 Score=34.77 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.1
Q ss_pred EEEeeccCCCCCcceecc
Q 005960 117 TVFAYGATGSGKTYTMQG 134 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm~G 134 (667)
.++-||..|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 678899999999987653
No 342
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=23.19 E-value=30 Score=35.35 Aligned_cols=18 Identities=39% Similarity=0.708 Sum_probs=14.5
Q ss_pred EEEEeeccCCCCCcceec
Q 005960 116 ATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm~ 133 (667)
..|...|++|+|||+++.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356667999999999873
No 343
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=22.87 E-value=26 Score=41.19 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=15.2
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
..|+-||++|+|||+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999864
No 344
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=22.80 E-value=28 Score=32.73 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=15.1
Q ss_pred CCEEEEeeccCCCCCccee
Q 005960 114 RNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 114 ~N~tIfaYGqTGSGKTyTm 132 (667)
....|.-.|.+|||||..+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456778899999999764
No 345
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=22.71 E-value=19 Score=37.78 Aligned_cols=21 Identities=43% Similarity=0.457 Sum_probs=15.3
Q ss_pred hcCCCCEEEEeeccCCCCCccee
Q 005960 110 IFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 110 vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+-.|.+.. -.|++|||||.++
T Consensus 172 i~~G~~i~--ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIV--VAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEE--EEESSSSCHHHHH
T ss_pred HhcCCEEE--EECCCCCCHHHHH
Confidence 33566544 4599999999976
No 346
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=22.55 E-value=21 Score=33.97 Aligned_cols=15 Identities=47% Similarity=0.700 Sum_probs=13.0
Q ss_pred EEeeccCCCCCccee
Q 005960 118 VFAYGATGSGKTYTM 132 (667)
Q Consensus 118 IfaYGqTGSGKTyTm 132 (667)
+.-.|+.|+|||.++
T Consensus 4 i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLI 18 (189)
T ss_dssp EEEESCCSSCHHHHH
T ss_pred EEEECCCCChHHHHH
Confidence 567899999999986
No 347
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=22.37 E-value=20 Score=37.26 Aligned_cols=19 Identities=53% Similarity=0.777 Sum_probs=14.6
Q ss_pred CCCCEEEEeeccCCCCCccee
Q 005960 112 HGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 112 ~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|.+ +.-.|++|||||.++
T Consensus 170 ~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCC--EEEEESTTSCHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 4654 456799999999876
No 348
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=22.36 E-value=29 Score=37.14 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=13.7
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
-++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4688999999999874
No 349
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=22.34 E-value=49 Score=35.14 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=20.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCHHHHhh
Q 005960 602 LKGIGQRLADYICELRQSSPVKSLSDLEK 630 (667)
Q Consensus 602 lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~ 630 (667)
|||||++.|-++|.. |.+++.+.+
T Consensus 237 IpGIG~KtA~kLl~~-----~gsle~i~~ 260 (379)
T 1ul1_X 237 IRGIGPKRAVDLIQK-----HKSIEEIVR 260 (379)
T ss_dssp CTTCCHHHHHHHHHH-----SSSHHHHHT
T ss_pred CCCcCHHHHHHHHHH-----cCCHHHHHH
Confidence 699999999999974 678888754
No 350
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=22.31 E-value=21 Score=39.29 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=14.6
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
..|+-||++|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34899999999999865
No 351
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=22.23 E-value=23 Score=35.35 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=17.1
Q ss_pred cCCCCEEEEeeccCCCCCccee
Q 005960 111 FHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 111 l~G~N~tIfaYGqTGSGKTyTm 132 (667)
-.|+...|...|.+|+|||..+
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHH
T ss_pred cCccEEEEEEECCCCCCHHHHH
Confidence 3688899999999999999743
No 352
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=22.02 E-value=22 Score=32.60 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=13.3
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4567999999999865
No 353
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=21.98 E-value=22 Score=34.29 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=12.2
Q ss_pred EEeeccCCCCCccee
Q 005960 118 VFAYGATGSGKTYTM 132 (667)
Q Consensus 118 IfaYGqTGSGKTyTm 132 (667)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999875
No 354
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=21.93 E-value=62 Score=31.90 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=39.0
Q ss_pred CcccCHHHHhcCCCCCHHHHHHHHHHHhcC--CC------------CCHHHHhhc-CCCHHHHHHHhcccc
Q 005960 591 LNTASREELVELKGIGQRLADYICELRQSS--PV------------KSLSDLEKI-GLSTKQVYNLFGKAA 646 (667)
Q Consensus 591 iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~--pf------------~~~~dL~~v-Gi~~~~~~~l~~~~~ 646 (667)
|=.++.++|.. -|++..+|++|++.-+.. .+ ...++|..+ |||+++.+-+.-...
T Consensus 90 la~~~~e~Lr~-~G~~~~KA~~I~~~A~~i~~~~~~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~ill~al 159 (233)
T 2h56_A 90 LYRVSDEALRQ-AGVSKRKIEYIRHVCEHVESGRLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFMMFSL 159 (233)
T ss_dssp HHTSCHHHHHH-TTCCHHHHHHHHHHHHHHHTTSSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred HHcCCHHHHHH-cCCCHHHHHHHHHHHHHHHhCCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhC
Confidence 34566777744 589999999998776533 33 234557788 999999988776543
No 355
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=21.90 E-value=23 Score=41.61 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.7
Q ss_pred EEEeeccCCCCCcceec
Q 005960 117 TVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm~ 133 (667)
.++..|+.|||||+|+.
T Consensus 377 ~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 46789999999999975
No 356
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=21.85 E-value=55 Score=35.52 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=21.8
Q ss_pred ccCHHHHhcCCCCCHHHHHHHHHHHh
Q 005960 593 TASREELVELKGIGQRLADYICELRQ 618 (667)
Q Consensus 593 tA~~~eL~~lpGIG~~~A~~Ii~~R~ 618 (667)
+|+.+||.. .|||++.|.+|.-.|.
T Consensus 496 ~AteDELRe-dGIGekqarrI~gl~~ 520 (685)
T 4gfj_A 496 EAGVEELRE-DGLTDAQIRELKGLKT 520 (685)
T ss_dssp HSCHHHHHH-TTCCHHHHHHHHTCHH
T ss_pred hCCHHHHHH-ccccHHHHHHHhhHHH
Confidence 499999966 9999999999986653
No 357
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=21.64 E-value=25 Score=32.31 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.3
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
..|+..|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999853
No 358
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=21.62 E-value=82 Score=27.21 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=24.4
Q ss_pred cCcccCHHHHhcCCCCCHHHHHHHHHHHhcC
Q 005960 590 FLNTASREELVELKGIGQRLADYICELRQSS 620 (667)
Q Consensus 590 ~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~ 620 (667)
+|-.-+.++|..++|+|++-.+.|.+.-++.
T Consensus 49 dL~~~se~dLlki~n~G~KSl~EI~~~L~~~ 79 (98)
T 1coo_A 49 DLVQRTEVELLKTPNLGKKSLTEIKDVLASR 79 (98)
T ss_dssp HHHTSCHHHHTTSTTCCHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 3345688999999999999999888775544
No 359
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=21.61 E-value=28 Score=31.62 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=13.1
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
..+-+|++|||||..|
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3457999999999865
No 360
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=21.59 E-value=29 Score=31.71 Aligned_cols=15 Identities=33% Similarity=0.538 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCcce
Q 005960 117 TVFAYGATGSGKTYT 131 (667)
Q Consensus 117 tIfaYGqTGSGKTyT 131 (667)
.|+-.|..|||||+.
T Consensus 6 ~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQ 20 (186)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999985
No 361
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=21.57 E-value=38 Score=32.27 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=19.8
Q ss_pred chhhhhcC-CC--CEEEEeeccCCCCCcce
Q 005960 105 PLIPGIFH-GR--NATVFAYGATGSGKTYT 131 (667)
Q Consensus 105 plV~~vl~-G~--N~tIfaYGqTGSGKTyT 131 (667)
+-+|.++. |+ ...++-+|.+|+|||.-
T Consensus 17 ~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 17 PGFDELIEGGFPEGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TTTGGGTTTSEETTCEEEEECCTTSSHHHH
T ss_pred HHHHHhhcCCCCCCeEEEEEeCCCCCHHHH
Confidence 45667775 43 44678899999999974
No 362
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=21.49 E-value=24 Score=37.29 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=15.0
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
..|.-.|++|||||.++
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46788999999999987
No 363
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=21.49 E-value=27 Score=32.40 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCcce
Q 005960 117 TVFAYGATGSGKTYT 131 (667)
Q Consensus 117 tIfaYGqTGSGKTyT 131 (667)
.|+-.|..|||||+.
T Consensus 12 ~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 12 NILITGTPGTGKTSM 26 (184)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999985
No 364
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=21.43 E-value=29 Score=31.68 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=13.5
Q ss_pred EEEEeeccCCCCCcce
Q 005960 116 ATVFAYGATGSGKTYT 131 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyT 131 (667)
..|+-.|..|||||+.
T Consensus 4 ~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578899999999985
No 365
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=21.19 E-value=28 Score=32.84 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=12.7
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.|+-.|++|||||..+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567899999999743
No 366
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=21.11 E-value=38 Score=31.20 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=14.4
Q ss_pred CEEEEeeccCCCCCccee
Q 005960 115 NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 115 N~tIfaYGqTGSGKTyTm 132 (667)
...|+-.|..|||||+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 346778899999999853
No 367
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=21.04 E-value=34 Score=31.62 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=15.8
Q ss_pred CCCCEEEEeeccCCCCCccee
Q 005960 112 HGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 112 ~G~N~tIfaYGqTGSGKTyTm 132 (667)
.+....|.-.|..|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 344557888999999999753
No 368
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=21.01 E-value=26 Score=41.68 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=18.3
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
|..++.|.+ ++..++||||||.+.
T Consensus 257 i~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEeCCCchHHHHH
Confidence 445567877 467889999999874
No 369
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=20.91 E-value=28 Score=33.76 Aligned_cols=20 Identities=25% Similarity=0.194 Sum_probs=14.1
Q ss_pred cCCCCEEEEeeccCCCCCcc
Q 005960 111 FHGRNATVFAYGATGSGKTY 130 (667)
Q Consensus 111 l~G~N~tIfaYGqTGSGKTy 130 (667)
....--..|-||+.|||||.
T Consensus 16 ~~~~g~l~fiyG~MgsGKTt 35 (195)
T 1w4r_A 16 SKTRGQIQVILGPMFSGKST 35 (195)
T ss_dssp ---CCEEEEEEECTTSCHHH
T ss_pred CCCceEEEEEECCCCCcHHH
Confidence 33334578999999999994
No 370
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=20.90 E-value=29 Score=40.24 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=18.6
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|..++.|.| ++..++||||||.+.
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 3445567876 567899999999874
No 371
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=20.75 E-value=33 Score=35.63 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=21.4
Q ss_pred chhhhhcC-CC--CEEEEeeccCCCCCccee
Q 005960 105 PLIPGIFH-GR--NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 105 plV~~vl~-G~--N~tIfaYGqTGSGKTyTm 132 (667)
+-+|.++. |+ ...+.-||++|+|||..+
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 45777885 44 457889999999999864
No 372
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=20.62 E-value=53 Score=32.07 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=36.8
Q ss_pred cCcccCHHHHhc-CC--CCCHHHHHHHHHHHhcC--CC---------CCHHHHhhc-CCCHHHHHHHhccc
Q 005960 590 FLNTASREELVE-LK--GIGQRLADYICELRQSS--PV---------KSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 590 ~iNtA~~~eL~~-lp--GIG~~~A~~Ii~~R~~~--pf---------~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
.|=.++.++|.. |. |....+|++|.+.-+.. .| ...++|..+ |||+++..-+.-..
T Consensus 71 ~la~~~~e~L~~~ir~~G~~~~KA~~L~~~a~~i~~~~~~l~~~~~~~~~~~L~~lpGIG~kTA~~il~~a 141 (218)
T 1pu6_A 71 KIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYA 141 (218)
T ss_dssp HHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHhcCChhhccchHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 344577788854 34 55566677776554321 22 356779999 99999998877654
No 373
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=20.61 E-value=29 Score=31.27 Aligned_cols=15 Identities=40% Similarity=0.660 Sum_probs=12.7
Q ss_pred EEEeeccCCCCCcce
Q 005960 117 TVFAYGATGSGKTYT 131 (667)
Q Consensus 117 tIfaYGqTGSGKTyT 131 (667)
.|+-.|..|||||+.
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 4 PIFMVGARGCGMTTV 18 (173)
T ss_dssp CEEEESCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 377899999999974
No 374
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=20.54 E-value=31 Score=28.91 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.2
Q ss_pred cccCcccCHHHHhcCCCCCHHH-HHHHHHHH
Q 005960 588 IDFLNTASREELVELKGIGQRL-ADYICELR 617 (667)
Q Consensus 588 ~v~iNtA~~~eL~~lpGIG~~~-A~~Ii~~R 617 (667)
.-.|=.|+.+||..+ ||.+. |++|.++=
T Consensus 41 l~~i~~AS~eEL~~v--ig~~~~A~~I~~~l 69 (84)
T 1z00_B 41 IAELAALSQDELTSI--LGNAANAKQLYDFI 69 (84)
T ss_dssp HHHHHHSCHHHHHHH--HSCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHH--hCchHHHHHHHHHH
Confidence 355668999999999 99999 99997643
No 375
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=20.53 E-value=37 Score=38.81 Aligned_cols=46 Identities=28% Similarity=0.377 Sum_probs=28.7
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceecc
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQG 134 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G 134 (667)
|.+..+ .+.. .|..-+. .+++.+-.|... ....|.||||||++|..
T Consensus 2 ~~~~~~-~~~~-~q~~ai~----~l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 2 FRYRGP-SPKG-DQPKAIA----GLVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCSC-CCCT-THHHHHH----HHHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCCC-CCCC-CChHHHH----HHHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 444443 5543 5554443 456666667543 34579999999999963
No 376
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=20.47 E-value=32 Score=31.21 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=13.9
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
..|+-.|..|||||..+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35778899999999854
No 377
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=20.39 E-value=31 Score=31.34 Aligned_cols=15 Identities=40% Similarity=0.596 Sum_probs=9.2
Q ss_pred EEEeeccCCCCCcce
Q 005960 117 TVFAYGATGSGKTYT 131 (667)
Q Consensus 117 tIfaYGqTGSGKTyT 131 (667)
.|+-.|..|||||+.
T Consensus 7 ~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 7 IIWINGPFGVGKTHT 21 (183)
T ss_dssp EEEEECCC----CHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999984
No 378
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=20.38 E-value=39 Score=33.16 Aligned_cols=55 Identities=31% Similarity=0.437 Sum_probs=39.3
Q ss_pred CcccCHHHHhc-CCCCC----HHHHHHHHHHHh--cC-----CC----CCHHHHh-hc-CCCHHHHHHHhccc
Q 005960 591 LNTASREELVE-LKGIG----QRLADYICELRQ--SS-----PV----KSLSDLE-KI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 591 iNtA~~~eL~~-lpGIG----~~~A~~Ii~~R~--~~-----pf----~~~~dL~-~v-Gi~~~~~~~l~~~~ 645 (667)
+-.++.++|+. |..+| ..+|++|.+..+ .. .+ ...++|. .+ |||+++..-+....
T Consensus 73 l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~~~~l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~ 145 (214)
T 3fhf_A 73 FLTLPREELEEKLKNLGHRFYRKRAEYIVLARRFKNIKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNV 145 (214)
T ss_dssp HHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGGGCCHHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhHHHHHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 45678888866 45445 778999998876 11 22 3456788 89 99999998876543
No 379
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=20.28 E-value=33 Score=37.12 Aligned_cols=15 Identities=33% Similarity=0.220 Sum_probs=13.0
Q ss_pred EEEeeccCCCCCcce
Q 005960 117 TVFAYGATGSGKTYT 131 (667)
Q Consensus 117 tIfaYGqTGSGKTyT 131 (667)
-++..++||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 457789999999987
Done!