Query 005960
Match_columns 667
No_of_seqs 459 out of 2903
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 12:11:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005960.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005960hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sdma_ c.37.1.9 (A:) Kinesin 100.0 1.8E-77 1.3E-81 645.1 21.5 321 27-362 1-330 (364)
2 d1v8ka_ c.37.1.9 (A:) Kinesin 100.0 4E-76 2.9E-80 634.1 27.9 322 22-355 26-362 (362)
3 d1goja_ c.37.1.9 (A:) Kinesin 100.0 5.6E-75 4.1E-79 623.2 31.6 327 23-364 2-339 (354)
4 d1x88a1 c.37.1.9 (A:18-362) Ki 100.0 2E-75 1.4E-79 624.6 23.6 322 27-357 1-345 (345)
5 d2zfia1 c.37.1.9 (A:4-352) Kin 100.0 4.6E-74 3.3E-78 615.0 26.7 317 26-352 1-349 (349)
6 d1bg2a_ c.37.1.9 (A:) Kinesin 100.0 4.5E-74 3.3E-78 608.9 24.3 311 25-354 4-323 (323)
7 d1ry6a_ c.37.1.9 (A:) Kinesin 100.0 1.2E-73 8.5E-78 607.5 25.2 316 28-353 2-330 (330)
8 d1f9va_ c.37.1.9 (A:) Kinesin 100.0 1.1E-72 7.7E-77 602.9 29.6 321 26-356 1-341 (342)
9 d2ncda_ c.37.1.9 (A:) Kinesin 100.0 2.4E-72 1.7E-76 605.8 26.1 312 25-353 44-367 (368)
10 d2duya1 a.60.2.7 (A:11-75) Unc 99.5 7.9E-15 5.7E-19 118.1 6.3 57 586-645 6-63 (65)
11 d3bzka1 a.60.2.6 (A:474-563) T 99.5 1.8E-14 1.3E-18 123.3 5.0 65 584-648 22-88 (90)
12 d2edua1 a.60.2.7 (A:8-98) KIF2 99.4 1.7E-14 1.2E-18 123.6 3.1 63 586-648 22-86 (91)
13 d2axtu1 a.60.12.2 (U:37-134) P 99.4 7.8E-14 5.7E-18 120.3 4.8 58 586-646 16-74 (98)
14 d2i5ha1 e.71.1.1 (A:16-195) Hy 98.3 1.2E-07 8.5E-12 89.2 2.8 65 586-651 99-170 (180)
15 d1x2ia1 a.60.2.5 (A:2-69) ATP- 97.6 1.1E-05 8.3E-10 64.2 2.0 57 590-646 3-63 (68)
16 d1kfta_ a.60.2.3 (A:) Excinucl 97.4 1.4E-05 1.1E-09 61.2 0.5 48 598-645 3-54 (56)
17 d2bgwa1 a.60.2.5 (A:160-229) D 97.3 6.2E-05 4.5E-09 60.0 3.4 55 592-646 8-66 (70)
18 d2i1qa1 a.60.4.1 (A:5-64) DNA 97.0 0.00018 1.3E-08 55.5 3.7 46 599-644 1-51 (60)
19 d1pzna1 a.60.4.1 (A:35-95) DNA 96.8 0.00033 2.4E-08 54.2 2.9 48 598-645 2-54 (61)
20 d1bvsa2 a.60.2.1 (A:64-134) DN 96.2 0.0035 2.6E-07 49.7 6.0 49 597-645 9-64 (71)
21 d2a1ja1 a.60.2.5 (A:837-898) D 95.9 0.0022 1.6E-07 49.5 3.3 50 596-646 2-55 (62)
22 d1cuka2 a.60.2.1 (A:65-142) DN 95.6 0.0051 3.7E-07 49.7 4.5 49 597-645 9-64 (78)
23 d1ixra1 a.60.2.1 (A:63-135) DN 95.5 0.0059 4.3E-07 48.7 4.5 49 597-645 10-65 (73)
24 d1kfta_ a.60.2.3 (A:) Excinucl 95.3 0.0037 2.7E-07 47.2 2.6 29 588-616 25-53 (56)
25 d3ci0k1 a.60.16.1 (K:204-274) 95.2 0.0036 2.6E-07 49.6 2.0 60 588-647 2-70 (71)
26 d2a1jb1 a.60.2.5 (B:219-296) D 94.9 0.0076 5.5E-07 48.4 3.3 49 597-645 19-71 (78)
27 d1bvsa2 a.60.2.1 (A:64-134) DN 94.5 0.011 7.9E-07 46.8 3.2 28 589-616 36-63 (71)
28 d2fmpa2 a.60.12.1 (A:92-148) D 94.1 0.013 9.4E-07 44.4 2.8 39 595-637 5-45 (57)
29 d1x2ia1 a.60.2.5 (A:2-69) ATP- 93.9 0.011 8.2E-07 46.2 2.2 30 589-618 34-63 (68)
30 d2bgwa1 a.60.2.5 (A:160-229) D 93.7 0.019 1.4E-06 45.0 3.3 29 589-617 37-65 (70)
31 d1jmsa3 a.60.12.1 (A:243-302) 93.7 0.028 2E-06 43.0 4.0 38 596-637 7-47 (60)
32 d2i1qa1 a.60.4.1 (A:5-64) DNA 93.4 0.03 2.2E-06 42.6 3.9 28 589-616 24-51 (60)
33 d1l8qa2 c.37.1.20 (A:77-289) C 92.6 0.021 1.6E-06 54.0 2.3 49 81-133 6-54 (213)
34 d1ixra1 a.60.2.1 (A:63-135) DN 92.5 0.038 2.8E-06 43.8 3.3 29 590-618 38-66 (73)
35 d1cuka2 a.60.2.1 (A:65-142) DN 92.4 0.033 2.4E-06 44.7 2.9 26 591-616 38-63 (78)
36 d2bcqa2 a.60.12.1 (A:329-385) 92.4 0.1 7.5E-06 39.2 5.5 40 596-639 7-47 (57)
37 d2fmpa1 a.60.6.1 (A:10-91) DNA 92.2 0.041 3E-06 44.4 3.2 37 594-630 45-81 (82)
38 d1pzna1 a.60.4.1 (A:35-95) DNA 91.5 0.039 2.9E-06 42.0 2.2 28 589-616 26-53 (61)
39 d2a1jb1 a.60.2.5 (B:219-296) D 91.4 0.047 3.4E-06 43.6 2.7 27 591-617 45-71 (78)
40 d1jmsa1 a.60.6.1 (A:148-242) T 90.9 0.053 3.9E-06 45.0 2.6 42 586-629 53-94 (95)
41 d2bcqa1 a.60.6.1 (A:252-327) D 90.0 0.1 7.3E-06 41.3 3.5 35 586-622 37-71 (76)
42 d1dgsa1 a.60.2.2 (A:401-581) N 89.6 0.051 3.7E-06 50.4 1.6 45 589-633 131-176 (181)
43 d1szpa1 a.60.4.1 (A:81-144) DN 88.9 0.1 7.6E-06 40.0 2.7 27 591-617 30-56 (64)
44 d1szpa1 a.60.4.1 (A:81-144) DN 88.0 0.1 7.3E-06 40.2 2.0 45 596-645 3-56 (64)
45 d1keaa_ a.96.1.2 (A:) Thymine- 87.8 0.13 9.5E-06 48.7 3.2 25 594-618 110-134 (217)
46 d1wg8a1 a.60.13.1 (A:109-206) 86.2 0.15 1.1E-05 42.5 2.3 43 589-631 24-72 (98)
47 d1orna_ a.96.1.1 (A:) Endonucl 86.2 0.18 1.3E-05 47.5 3.2 27 594-620 107-133 (214)
48 d1w5sa2 c.37.1.20 (A:7-293) CD 85.8 0.22 1.6E-05 46.8 3.5 49 106-164 32-85 (287)
49 d1kg2a_ a.96.1.2 (A:) Catalyti 85.4 0.2 1.5E-05 47.4 3.1 29 593-621 105-133 (224)
50 d1rrqa1 a.96.1.2 (A:9-229) Cat 85.4 0.21 1.5E-05 47.2 3.2 28 593-620 103-130 (221)
51 d2abka_ a.96.1.1 (A:) Endonucl 84.6 0.23 1.7E-05 46.7 3.1 28 594-621 106-133 (211)
52 d1b22a_ a.60.4.1 (A:) DNA repa 83.8 0.22 1.6E-05 38.8 2.1 29 589-617 35-63 (70)
53 d1r7ra3 c.37.1.20 (A:471-735) 83.6 0.16 1.2E-05 49.2 1.4 50 82-132 4-58 (265)
54 d1gvnb_ c.37.1.21 (B:) Plasmid 82.9 0.17 1.3E-05 47.6 1.4 16 117-132 34-49 (273)
55 d2p6ra2 a.289.1.2 (A:489-686) 82.9 0.23 1.7E-05 46.4 2.2 31 596-630 143-173 (198)
56 d1dgsa1 a.60.2.2 (A:401-581) N 82.6 0.48 3.5E-05 43.5 4.3 45 601-645 111-159 (181)
57 d1lv7a_ c.37.1.20 (A:) AAA dom 80.1 0.19 1.3E-05 48.7 0.4 45 82-132 9-62 (256)
58 d1vdda_ e.49.1.1 (A:) Recombin 79.6 0.44 3.2E-05 44.4 2.9 55 597-653 12-66 (199)
59 d2a1ja1 a.60.2.5 (A:837-898) D 78.6 0.43 3.1E-05 36.0 2.0 28 589-617 27-54 (62)
60 d1p9ra_ c.37.1.11 (A:) Extrace 77.4 0.28 2E-05 50.4 0.8 28 106-133 149-176 (401)
61 d1b22a_ a.60.4.1 (A:) DNA repa 76.9 0.85 6.2E-05 35.3 3.4 49 596-645 10-63 (70)
62 d1fnna2 c.37.1.20 (A:1-276) CD 76.1 0.33 2.4E-05 45.2 0.8 19 114-132 42-60 (276)
63 d1xo1a1 a.60.7.1 (A:186-290) T 74.4 1.1 8.1E-05 37.3 3.7 38 599-641 21-61 (105)
64 d1sxjd2 c.37.1.20 (D:26-262) R 73.8 0.39 2.8E-05 44.3 0.7 22 112-133 30-51 (237)
65 d1pu6a_ a.96.1.5 (A:) 3-Methyl 73.6 0.88 6.4E-05 42.7 3.2 28 594-621 117-144 (217)
66 d1rxwa1 a.60.7.1 (A:220-324) F 73.1 0.87 6.3E-05 37.8 2.7 27 600-631 19-45 (105)
67 d1mpga1 a.96.1.3 (A:100-282) 3 72.1 2.6 0.00019 38.1 6.1 48 596-644 107-160 (183)
68 d1ixsb2 c.37.1.20 (B:4-242) Ho 71.9 0.34 2.4E-05 45.2 -0.3 44 83-132 7-52 (239)
69 d1d2na_ c.37.1.20 (A:) Hexamer 71.5 0.61 4.4E-05 44.5 1.5 49 82-132 6-57 (246)
70 d1okkd2 c.37.1.10 (D:97-303) G 70.1 0.57 4.1E-05 43.8 0.9 21 113-133 4-24 (207)
71 d1a77a1 a.60.7.1 (A:209-316) F 69.0 1.2 9E-05 36.9 2.8 26 601-631 21-46 (108)
72 d1iqpa2 c.37.1.20 (A:2-232) Re 68.6 0.58 4.2E-05 43.2 0.6 21 112-132 42-62 (231)
73 d1m6ya1 a.60.13.1 (A:115-215) 68.5 0.95 6.9E-05 37.5 1.9 40 589-631 26-72 (101)
74 d2noha1 a.96.1.3 (A:136-325) 8 67.8 1.2 8.9E-05 40.5 2.7 23 596-618 102-124 (190)
75 d1ixza_ c.37.1.20 (A:) AAA dom 66.8 0.81 5.9E-05 43.6 1.3 49 82-132 6-59 (247)
76 d1ul1x1 a.60.7.1 (X:218-357) F 66.1 1.8 0.00013 37.4 3.3 26 600-630 19-44 (140)
77 d1e32a2 c.37.1.20 (A:201-458) 65.9 0.85 6.2E-05 43.5 1.2 49 83-132 2-55 (258)
78 d1qdea_ c.37.1.19 (A:) Initiat 65.7 0.79 5.7E-05 42.5 0.9 25 106-132 40-64 (212)
79 d1ly1a_ c.37.1.1 (A:) Polynucl 65.3 0.84 6.1E-05 38.7 0.9 16 117-132 4-19 (152)
80 d1yksa1 c.37.1.14 (A:185-324) 65.3 0.94 6.9E-05 37.4 1.2 15 119-133 11-25 (140)
81 d1szpa2 c.37.1.11 (A:145-395) 64.8 0.93 6.7E-05 41.2 1.2 27 105-131 21-50 (251)
82 d1gkub1 c.37.1.16 (B:1-250) He 63.8 0.75 5.5E-05 42.9 0.3 24 106-131 51-74 (237)
83 d3ci0k2 a.60.16.1 (K:94-203) P 63.1 1.6 0.00011 36.5 2.2 27 621-647 78-105 (110)
84 d1j8yf2 c.37.1.10 (F:87-297) G 62.4 1.2 8.5E-05 41.7 1.4 19 115-133 12-30 (211)
85 d1b43a1 a.60.7.1 (A:220-339) F 61.8 3.7 0.00027 34.7 4.5 38 601-643 21-60 (120)
86 d1s2ma1 c.37.1.19 (A:46-251) P 60.6 1.1 8.1E-05 40.9 0.9 24 107-132 32-55 (206)
87 d2i3ba1 c.37.1.11 (A:1-189) Ca 60.5 0.99 7.2E-05 38.8 0.5 15 118-132 4-18 (189)
88 d2p6ra3 c.37.1.19 (A:1-202) He 60.2 0.69 5E-05 42.0 -0.7 23 107-131 34-56 (202)
89 d1ngna_ a.96.1.2 (A:) Mismatch 60.1 1.5 0.00011 38.5 1.5 22 595-616 91-112 (144)
90 d1sxja2 c.37.1.20 (A:295-547) 60.1 1.1 7.9E-05 41.6 0.7 20 113-132 50-69 (253)
91 d2csba3 a.60.2.4 (A:410-464) T 59.8 6.8 0.00049 27.3 4.7 44 597-641 2-54 (55)
92 d2qy9a2 c.37.1.10 (A:285-495) 59.3 1.2 8.4E-05 41.8 0.7 18 116-133 10-27 (211)
93 d2edua1 a.60.2.7 (A:8-98) KIF2 59.1 2.6 0.00019 34.1 2.8 24 593-616 59-82 (91)
94 d1in4a2 c.37.1.20 (A:17-254) H 57.4 1.3 9.4E-05 40.8 0.7 44 83-132 7-52 (238)
95 d1vmaa2 c.37.1.10 (A:82-294) G 57.3 1.3 9.4E-05 41.5 0.7 18 116-133 12-29 (213)
96 d1uaaa1 c.37.1.19 (A:2-307) DE 56.7 1.2 8.7E-05 42.2 0.3 16 118-133 17-32 (306)
97 d1sxjc2 c.37.1.20 (C:12-238) R 55.7 1.3 9.6E-05 40.5 0.4 21 112-132 32-52 (227)
98 d1ls1a2 c.37.1.10 (A:89-295) G 54.6 1.5 0.00011 40.7 0.7 18 116-133 11-28 (207)
99 d1q0ua_ c.37.1.19 (A:) Probabl 54.1 1.1 7.9E-05 40.8 -0.5 24 107-132 32-55 (209)
100 d1ofha_ c.37.1.20 (A:) HslU {H 53.9 1.7 0.00012 42.5 1.0 17 116-132 50-66 (309)
101 d1sxjb2 c.37.1.20 (B:7-230) Re 53.8 1.4 0.0001 40.4 0.3 23 111-133 32-54 (224)
102 d2fnaa2 c.37.1.20 (A:1-283) Ar 53.6 1.4 0.0001 40.6 0.2 22 111-132 25-46 (283)
103 d1t6na_ c.37.1.19 (A:) Spliceo 53.5 2 0.00014 39.4 1.3 25 106-132 31-55 (207)
104 d2o3fa1 a.4.1.20 (A:1-83) Puta 53.1 3.5 0.00025 32.6 2.6 42 606-647 20-62 (83)
105 d1pjra1 c.37.1.19 (A:1-318) DE 52.9 1.2 8.8E-05 42.8 -0.4 16 117-132 26-41 (318)
106 d1veca_ c.37.1.19 (A:) DEAD bo 52.5 2.4 0.00017 38.7 1.7 25 106-132 33-57 (206)
107 d1tf7a2 c.37.1.11 (A:256-497) 51.6 5 0.00036 36.4 3.9 29 104-132 12-43 (242)
108 d1g6oa_ c.37.1.11 (A:) Hexamer 51.3 1.6 0.00012 43.1 0.3 19 112-132 165-183 (323)
109 d1pzna2 c.37.1.11 (A:96-349) D 50.5 2.7 0.0002 38.3 1.8 28 104-131 22-52 (254)
110 d1x6va3 c.37.1.4 (A:34-228) Ad 50.3 1.5 0.00011 38.4 -0.1 20 112-131 15-35 (195)
111 d1keaa_ a.96.1.2 (A:) Thymine- 50.2 9.4 0.00069 35.2 5.6 56 590-645 67-133 (217)
112 d2fz4a1 c.37.1.19 (A:24-229) D 49.4 2.1 0.00016 38.9 0.8 24 108-133 80-103 (206)
113 d2eyqa3 c.37.1.19 (A:546-778) 47.4 3.6 0.00027 38.7 2.2 30 102-131 63-92 (233)
114 d1doqa_ a.60.3.1 (A:) C-termin 47.3 5.6 0.00041 30.4 2.8 32 588-619 31-62 (69)
115 d2j0sa1 c.37.1.19 (A:22-243) P 47.3 2.8 0.0002 39.0 1.2 25 106-132 47-71 (222)
116 d2bdta1 c.37.1.25 (A:1-176) Hy 47.2 2.6 0.00019 35.7 1.0 15 117-131 4-18 (176)
117 d1m8pa3 c.37.1.15 (A:391-573) 47.1 3 0.00022 35.4 1.4 16 116-131 7-22 (183)
118 d2g9na1 c.37.1.19 (A:21-238) I 46.7 2.5 0.00018 39.1 0.8 24 107-132 43-66 (218)
119 d1g41a_ c.37.1.20 (A:) HslU {H 46.3 2.6 0.00019 43.5 1.0 16 117-132 51-66 (443)
120 d2gy9m1 a.156.1.1 (M:1-114) Ri 45.9 6.8 0.0005 32.7 3.5 45 596-645 15-59 (114)
121 d2axtu1 a.60.12.2 (U:37-134) P 45.4 4.2 0.00031 33.3 2.0 28 593-620 49-76 (98)
122 d2i1qa2 c.37.1.11 (A:65-322) D 45.3 3.1 0.00023 37.3 1.3 28 105-132 21-51 (258)
123 d1ngna_ a.96.1.2 (A:) Mismatch 44.9 5.6 0.00041 34.5 2.8 54 589-643 53-111 (144)
124 d2bcqa1 a.60.6.1 (A:252-327) D 44.8 13 0.00097 28.3 4.8 31 621-651 41-72 (76)
125 d1qhxa_ c.37.1.3 (A:) Chloramp 43.6 3.2 0.00023 35.3 1.0 16 117-132 5-20 (178)
126 d1sxje2 c.37.1.20 (E:4-255) Re 43.5 2.7 0.0002 38.6 0.5 16 117-132 35-50 (252)
127 d1n0wa_ c.37.1.11 (A:) DNA rep 43.2 3.9 0.00029 35.4 1.6 27 105-131 10-39 (242)
128 d1wrba1 c.37.1.19 (A:164-401) 43.2 3.5 0.00025 38.5 1.3 25 106-132 51-75 (238)
129 d1e9ra_ c.37.1.11 (A:) Bacteri 43.2 2.5 0.00018 42.4 0.2 16 118-133 53-68 (433)
130 d1w36d1 c.37.1.19 (D:2-360) Ex 42.6 5.7 0.00041 39.6 2.9 17 117-133 165-181 (359)
131 d1a1va1 c.37.1.14 (A:190-325) 42.4 4.9 0.00036 33.3 2.0 19 112-131 6-24 (136)
132 d1cmwa1 a.60.7.1 (A:174-289) 5 41.5 0.61 4.5E-05 39.2 -4.2 39 599-642 20-60 (116)
133 d1yj5a2 c.37.1.1 (A:351-522) 5 41.4 3.9 0.00028 36.2 1.2 17 115-131 14-30 (172)
134 d1y63a_ c.37.1.1 (A:) Probable 41.4 3.6 0.00026 35.1 1.0 15 117-131 7-21 (174)
135 d2duya1 a.60.2.7 (A:11-75) Unc 41.2 5.4 0.00039 29.9 1.8 24 593-616 39-62 (65)
136 d1wp9a1 c.37.1.19 (A:1-200) pu 41.2 3.5 0.00026 36.5 0.9 18 113-132 23-40 (200)
137 d2uubm1 a.156.1.1 (M:2-126) Ri 41.1 9.2 0.00067 32.4 3.6 45 596-645 15-59 (125)
138 d1y9qa1 a.35.1.8 (A:4-82) Prob 40.7 15 0.0011 27.8 4.5 38 607-645 7-45 (79)
139 d1oywa2 c.37.1.19 (A:1-206) Re 40.7 2.3 0.00016 38.3 -0.6 23 108-132 35-57 (206)
140 d1gm5a3 c.37.1.19 (A:286-549) 40.3 3.3 0.00024 39.8 0.5 34 94-131 87-120 (264)
141 d1knqa_ c.37.1.17 (A:) Glucona 40.3 3.9 0.00028 34.8 1.0 15 117-131 8-22 (171)
142 d1kaga_ c.37.1.2 (A:) Shikimat 40.1 4 0.00029 33.9 1.0 14 118-131 5-18 (169)
143 d1rkba_ c.37.1.1 (A:) Adenylat 38.6 4.2 0.00031 34.4 1.0 15 118-132 7-21 (173)
144 d1gm5a2 b.40.4.9 (A:106-285) R 38.3 4 0.00029 36.3 0.8 30 597-630 10-39 (180)
145 d1wuda1 a.60.8.1 (A:530-606) H 37.7 8.2 0.00059 29.7 2.5 21 592-612 41-61 (77)
146 d1g8pa_ c.37.1.20 (A:) ATPase 37.5 3.2 0.00023 40.4 -0.1 42 81-132 3-45 (333)
147 d1y7ya1 a.35.1.3 (A:5-73) Rest 37.0 18 0.0013 26.6 4.4 37 608-645 9-46 (69)
148 d2e1fa1 a.60.8.1 (A:1142-1235) 36.4 8.5 0.00062 30.9 2.5 21 592-612 50-70 (94)
149 d1ukza_ c.37.1.1 (A:) Uridylat 35.7 5.4 0.00039 35.2 1.2 16 116-131 9-24 (196)
150 d2fmpa1 a.60.6.1 (A:10-91) DNA 35.6 19 0.0014 27.9 4.4 30 621-650 43-73 (82)
151 d1zaka1 c.37.1.1 (A:3-127,A:15 35.1 4.8 0.00035 35.4 0.7 15 118-132 6-20 (189)
152 d1d0xa2 c.37.1.9 (A:2-33,A:80- 34.9 5.4 0.0004 43.5 1.3 22 112-133 122-143 (712)
153 d1bifa1 c.37.1.7 (A:37-249) 6- 34.8 6 0.00044 34.7 1.4 17 116-132 3-19 (213)
154 d1ye8a1 c.37.1.11 (A:1-178) Hy 34.6 4.5 0.00033 34.7 0.4 15 118-132 3-17 (178)
155 d1v5wa_ c.37.1.11 (A:) Meiotic 34.3 7.9 0.00058 34.8 2.2 27 105-131 24-53 (258)
156 d2b5aa1 a.35.1.3 (A:1-77) Regu 34.2 22 0.0016 26.5 4.6 37 607-644 9-46 (77)
157 d1kk8a2 c.37.1.9 (A:1-28,A:77- 34.0 5.3 0.00039 44.1 1.0 21 112-132 118-138 (789)
158 d1svma_ c.37.1.20 (A:) Papillo 33.9 7.8 0.00057 38.6 2.2 17 116-132 155-171 (362)
159 d1qf9a_ c.37.1.1 (A:) UMP/CMP 33.5 5.3 0.00038 35.2 0.7 15 117-131 8-22 (194)
160 d1khta_ c.37.1.1 (A:) Adenylat 33.4 6.1 0.00045 33.6 1.2 17 116-132 2-18 (190)
161 d1zp6a1 c.37.1.25 (A:6-181) Hy 33.2 5.5 0.0004 33.8 0.8 15 117-131 6-20 (176)
162 d1w36b1 c.37.1.19 (B:1-485) Ex 33.2 4.3 0.00031 40.5 0.1 23 112-134 13-35 (485)
163 d1lb2b_ a.60.3.1 (B:) C-termin 32.9 14 0.001 28.2 3.1 28 593-620 34-61 (72)
164 d2mysa2 c.37.1.9 (A:4-33,A:80- 32.9 5.8 0.00042 43.8 1.1 21 112-132 120-140 (794)
165 d1jmsa1 a.60.6.1 (A:148-242) T 32.9 16 0.0012 29.1 3.7 30 621-650 57-87 (95)
166 d1jmsa3 a.60.12.1 (A:243-302) 32.7 5.7 0.00042 29.5 0.7 24 622-645 4-28 (60)
167 d2r1jl1 a.35.1.2 (L:3-68) P22 32.7 17 0.0012 26.4 3.5 36 609-645 4-40 (66)
168 d1w7ja2 c.37.1.9 (A:63-792) My 32.4 6.3 0.00046 43.0 1.3 21 112-132 91-111 (730)
169 d1z3eb1 a.60.3.1 (B:245-311) C 32.2 21 0.0015 26.8 4.0 33 587-619 29-61 (67)
170 d1tf7a1 c.37.1.11 (A:14-255) C 31.6 7.3 0.00053 34.5 1.4 27 105-131 13-42 (242)
171 d1d5ya1 a.4.1.8 (A:3-56) Rob t 31.5 21 0.0015 24.9 3.8 39 608-647 3-45 (54)
172 d1a5ta2 c.37.1.20 (A:1-207) de 31.4 6.9 0.0005 35.5 1.2 29 105-133 13-42 (207)
173 d1kg2a_ a.96.1.2 (A:) Catalyti 30.8 28 0.002 31.8 5.6 57 589-645 63-129 (224)
174 d2bmfa2 c.37.1.14 (A:178-482) 30.8 6.9 0.0005 36.6 1.1 19 112-132 8-26 (305)
175 d1zeta2 e.8.1.7 (A:27-299) DNA 30.7 23 0.0017 33.2 5.1 40 598-643 209-248 (273)
176 d1njfa_ c.37.1.20 (A:) delta p 30.1 7.3 0.00053 35.8 1.1 18 115-132 34-51 (239)
177 d1m7ga_ c.37.1.4 (A:) Adenosin 30.1 9.5 0.00069 34.6 2.0 28 104-131 12-40 (208)
178 d2croa_ a.35.1.2 (A:) cro 434 29.9 26 0.0019 25.3 4.2 35 609-644 4-39 (65)
179 d1teva_ c.37.1.1 (A:) UMP/CMP 29.5 7.2 0.00053 34.1 1.0 14 118-131 4-17 (194)
180 d1br2a2 c.37.1.9 (A:80-789) My 29.5 8.1 0.00059 42.0 1.6 22 112-133 88-109 (710)
181 d1r6bx3 c.37.1.20 (X:437-751) 29.4 7.6 0.00055 37.7 1.2 17 116-132 53-69 (315)
182 d1qvra3 c.37.1.20 (A:536-850) 29.3 7.4 0.00054 37.9 1.1 17 116-132 54-70 (315)
183 d1lkxa_ c.37.1.9 (A:) Myosin S 29.0 8.4 0.00061 41.7 1.5 22 112-133 83-104 (684)
184 d1lw7a2 c.37.1.1 (A:220-411) T 28.9 6 0.00044 33.4 0.3 16 117-132 9-24 (192)
185 d1pu6a_ a.96.1.5 (A:) 3-Methyl 28.9 17 0.0012 33.4 3.5 55 590-644 70-139 (217)
186 d3adka_ c.37.1.1 (A:) Adenylat 28.5 7.7 0.00056 34.2 1.0 15 117-131 10-24 (194)
187 d1zina1 c.37.1.1 (A:1-125,A:16 27.9 8.1 0.00059 33.2 1.0 14 118-131 3-16 (182)
188 d2e1fa1 a.60.8.1 (A:1142-1235) 27.8 27 0.002 27.7 4.2 34 605-642 38-72 (94)
189 d2cdna1 c.37.1.1 (A:1-181) Ade 27.8 8.1 0.00059 33.5 1.0 14 118-131 3-16 (181)
190 d1u94a1 c.37.1.11 (A:6-268) Re 27.5 8 0.00059 36.8 0.9 30 103-132 38-71 (263)
191 d3bzka1 a.60.2.6 (A:474-563) T 27.5 11 0.00081 29.9 1.7 21 594-614 62-82 (90)
192 d2fmpa2 a.60.12.1 (A:92-148) D 27.0 16 0.0012 26.7 2.4 22 624-645 5-27 (57)
193 d1s3ga1 c.37.1.1 (A:1-125,A:16 27.0 8.5 0.00062 33.4 1.0 14 118-131 3-16 (182)
194 d1e6ca_ c.37.1.2 (A:) Shikimat 26.7 7.8 0.00057 33.4 0.6 14 117-130 4-17 (170)
195 d1nlfa_ c.37.1.11 (A:) Hexamer 26.5 7.4 0.00054 36.0 0.4 25 106-132 22-46 (274)
196 d1um8a_ c.37.1.20 (A:) ClpX {H 26.5 7.3 0.00053 38.8 0.4 18 114-131 67-84 (364)
197 d1mkya1 c.37.1.8 (A:2-172) Pro 25.9 7.9 0.00058 33.2 0.5 17 116-132 1-17 (171)
198 d1e4va1 c.37.1.1 (A:1-121,A:15 25.1 9 0.00066 33.1 0.7 14 118-131 3-16 (179)
199 d1rrqa1 a.96.1.2 (A:9-229) Cat 24.9 20 0.0014 32.8 3.2 56 590-645 62-127 (221)
200 d1mpga1 a.96.1.3 (A:100-282) 3 24.3 23 0.0017 31.4 3.4 54 590-644 61-127 (183)
201 d1r69a_ a.35.1.2 (A:) 434 C1 r 23.8 40 0.0029 23.9 4.2 33 610-643 3-36 (63)
202 d1akya1 c.37.1.1 (A:3-130,A:16 23.7 11 0.00078 32.8 1.0 15 118-132 5-19 (180)
203 g1qhh.1 c.37.1.19 (A:,B:,C:,D: 23.4 8.6 0.00063 39.7 0.3 17 118-134 27-43 (623)
204 d2ak3a1 c.37.1.1 (A:0-124,A:16 23.4 11 0.0008 33.4 1.0 14 118-131 9-22 (189)
205 d1ak2a1 c.37.1.1 (A:14-146,A:1 23.2 11 0.00081 32.8 1.0 18 113-132 3-20 (190)
206 d1x57a1 a.35.1.12 (A:8-85) End 22.8 38 0.0028 25.5 4.1 39 606-645 4-43 (78)
207 d1jx4a2 e.8.1.7 (A:1-240) DinB 22.7 22 0.0016 32.7 3.1 29 599-631 180-208 (240)
208 d1gkya_ c.37.1.1 (A:) Guanylat 22.7 9.8 0.00071 33.5 0.4 14 118-131 4-17 (186)
209 d2a6ca1 a.35.1.13 (A:1-69) HTH 22.7 51 0.0037 24.0 4.7 35 608-643 6-41 (69)
210 d1viaa_ c.37.1.2 (A:) Shikimat 22.6 12 0.00087 32.0 1.0 13 118-130 3-15 (161)
211 d2csba4 a.60.2.4 (A:465-519) T 22.2 75 0.0055 21.7 5.0 48 596-643 3-53 (55)
212 d2hkja1 a.156.1.3 (A:229-306) 21.9 38 0.0028 25.5 3.9 39 601-644 33-71 (78)
213 d1hv8a1 c.37.1.19 (A:3-210) Pu 21.8 14 0.001 33.2 1.3 25 107-132 35-59 (208)
214 d1w44a_ c.37.1.11 (A:) NTPase 20.4 17 0.0012 35.6 1.7 35 320-354 220-256 (321)
215 d1rz3a_ c.37.1.6 (A:) Hypothet 20.2 21 0.0015 30.4 2.2 18 115-132 22-39 (198)
216 d1ci4a_ a.60.5.1 (A:) Barrier- 20.0 26 0.0019 27.7 2.5 41 599-643 20-64 (89)
No 1
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=100.00 E-value=1.8e-77 Score=645.07 Aligned_cols=321 Identities=32% Similarity=0.515 Sum_probs=277.9
Q ss_pred CeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCchhHHHHhhccch
Q 005960 27 KVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYSEVNPL 106 (667)
Q Consensus 27 ~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~~~v~pl 106 (667)
+|+|+|||||+.+.|...+ ...++.+.+... ...... ....+.|.||+||++++ +|++||+. +.|+
T Consensus 1 rIkV~vRvRP~~~~E~~~~---~~~~v~~~~~~~-------~~~~~~--~~~~~~f~FD~vf~~~~-~q~~vy~~-v~~l 66 (364)
T d1sdma_ 1 KIRVYCRLRPLCEKEIIAK---ERNAIRSVDEFT-------VEHLWK--DDKAKQHMYDRVFDGNA-TQDDVFED-TKYL 66 (364)
T ss_dssp CCEEEEEECCCCHHHHHTT---CCBCEEECSTTE-------EEEECS--SSSEEEEECSEEECTTC-CHHHHHHT-TTHH
T ss_pred CeEEEEEcCCCChhhcccC---CCCeEEeCCCCe-------EEecCC--CCCceEEECCeecCCCC-CHHHHHHH-HHHH
Confidence 6999999999999887654 334555554422 122211 22457899999999886 88999986 6999
Q ss_pred hhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc----CCceEEEEEEEEecceeeeccCCCC--
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS----TGSTAEISYYEVYMDRCYDLLEVKT-- 180 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~----~~~~v~vS~~EIYnE~v~DLL~~~~-- 180 (667)
|+++++|||+||||||||||||||||+|+.+++||+||++++||+.+.. ..+.|++||+|||||++||||.+..
T Consensus 67 v~~~l~G~n~~i~aYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~ 146 (364)
T d1sdma_ 67 VQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAK 146 (364)
T ss_dssp HHHHHTTCEEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSC
T ss_pred HHHHhcCCceeeeccccCCCCcccccccCccccchhHHHHHHHHhhhhhccccccceEEEEEEEEeccccccccCccccc
Confidence 9999999999999999999999999999999999999999999987754 3468999999999999999998654
Q ss_pred -CceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCCCCceEEEEEE
Q 005960 181 -KEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTGKLN 259 (667)
Q Consensus 181 -~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~skL~ 259 (667)
..+.+++++.++++|.|++++.|.+++|+..+|..|..+|.+++|.+|..|||||+||+|++.+...+ ......++|+
T Consensus 147 ~~~l~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~-~~~~~~~kl~ 225 (364)
T d1sdma_ 147 RLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ-TQAIARGKLS 225 (364)
T ss_dssp CCCCEEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETT-TCCEEEEEEE
T ss_pred ccccceeecccCccccccceeeeeCCHHHHHHHhhccceeeccccccccccccccceEEEEEEEEeccC-cceeeeEEEE
Confidence 35788999999999999999999999999999999999999999999999999999999999887654 3455789999
Q ss_pred EEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcccCCCccceEEEEeCCC--C
Q 005960 260 LIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG--E 337 (667)
Q Consensus 260 fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqdsLgGnskt~mIa~vsP~--~ 337 (667)
||||||+||..++++.|.+++|+..||+||.+|++||.+|+++..|||||+||||+||||+||||++|+|||||||+ +
T Consensus 226 ~vDLAGsEr~~~~~~~g~~~~E~~~iN~SL~~L~~vi~aL~~~~~~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~ 305 (364)
T d1sdma_ 226 FVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESN 305 (364)
T ss_dssp EEECCCCSCCCC---------CCCTTCHHHHHHHHHHHHHHHTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGG
T ss_pred eechhhccccccccccCceeeeccccccchhhHHHHHHHHHcCCCcCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997 6
Q ss_pred hhhhHHHHHHHHHhhhccccccccc
Q 005960 338 YQESVHTVSLAARSRHISNTLPSAQ 362 (667)
Q Consensus 338 ~~ETlsTL~fA~rar~I~N~~~~~~ 362 (667)
|+||++||+||+||+.|+|.+..|.
T Consensus 306 ~~eTl~TL~fa~~ak~i~n~p~~n~ 330 (364)
T d1sdma_ 306 LDETHNSLTYASRVRSIVNDPSKNV 330 (364)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCCE
T ss_pred HHHHHHHHHHHHHHhhcccCCcccC
Confidence 9999999999999999999776654
No 2
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}
Probab=100.00 E-value=4e-76 Score=634.06 Aligned_cols=322 Identities=33% Similarity=0.517 Sum_probs=255.1
Q ss_pred CCCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCchhHHHHh
Q 005960 22 TSTSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYS 101 (667)
Q Consensus 22 ~~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~~ 101 (667)
+...++|+|+|||||+++.|...+ ...+|.+.+...+.. .+.............+.|.||+||++++ +|++||+.
T Consensus 26 ~~~~~~I~V~vRvRPl~~~E~~~~---~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~FD~vf~~~~-~Q~~Vy~~ 100 (362)
T d1v8ka_ 26 PIEEHRICVCVRKRPLNKQELAKK---EIDVISVPSKCLLLV-HEPKLKVDLTKYLENQAFCFDFAFDETA-SNEVVYRF 100 (362)
T ss_dssp TTSCCCEEEEEEECCCCHHHHHTT---CCBCEECCSSSEEEE-EEEEECTTCCEEEEEEEEECSEEECTTC-CHHHHHHH
T ss_pred CCCCCCEEEEEEeCCCChHHhhCC---CceEEEECCCcEEEE-eCCccccccccCcCceeEeCCeecCCCC-CHHHHHHH
Confidence 345678999999999999997655 345666644322110 0000001111112346899999999986 88999999
Q ss_pred hccchhhhhcCCCCEEEEeeccCCCCCcceeccCC------CCCCChHHHHHHHHhhhcc-----CCceEEEEEEEEecc
Q 005960 102 EVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSE------ERPGLMPLAMSKILSICQS-----TGSTAEISYYEVYMD 170 (667)
Q Consensus 102 ~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~------~~~GLipral~~LF~~~~~-----~~~~v~vS~~EIYnE 170 (667)
.+.|+|+++++|||+||||||||||||||||+|+. .++||+||++++||..++. ..+.|++||+|||||
T Consensus 101 ~~~plv~~~l~G~n~tifaYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~~~v~vS~~EIyne 180 (362)
T d1v8ka_ 101 TARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNG 180 (362)
T ss_dssp TTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETT
T ss_pred HHHHHHHHHHhccCceEEeeccCCCCCceeeeecCCCCcccccCCeeeehhhhHHHHhhcccccccchhheeeeeeecCC
Confidence 99999999999999999999999999999999974 3689999999999987643 468999999999999
Q ss_pred eeeeccCCCCCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCCC
Q 005960 171 RCYDLLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDS 250 (667)
Q Consensus 171 ~v~DLL~~~~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~ 250 (667)
+++|||.+.. .+.++++..+++++.|++++.|.+++|+..+|..|..+|.+++|.+|..|||||+||+|.+.+.
T Consensus 181 ~i~DLL~~~~-~~~~~~~~~~~~~v~gl~e~~v~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~i~~i~i~~~----- 254 (362)
T d1v8ka_ 181 KVFDLLNKKA-KLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK----- 254 (362)
T ss_dssp EEEETTTTTE-EEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS-----
T ss_pred eEEecccCCc-cccccccccCCcccCCCEEEEecCHHHHHHHHhccccccccccccCcccCcceeeEEEEEEEec-----
Confidence 9999998654 5788999999999999999999999999999999999999999999999999999999999742
Q ss_pred CceEEEEEEEEECCCCCCcccccc-ccchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcc-cCCCccce
Q 005960 251 KAALTGKLNLIDLAGNEDNRRTCN-EGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDS-LGGTSHAL 328 (667)
Q Consensus 251 ~~~~~skL~fVDLAGSEr~~~t~~-~g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqds-LgGnskt~ 328 (667)
....++|+||||||+||..++.. .+.+++|+..||+||++|++||.+|++++.|||||+||||+||||+ |||||+|+
T Consensus 255 -~~~~~~l~~VDLAGsEr~~~~~~~~~~~~~E~~~IN~SL~~L~~vi~aL~~~~~hiPyR~SkLT~lLkdsllGgns~t~ 333 (362)
T d1v8ka_ 255 -GRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTC 333 (362)
T ss_dssp -SSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHSSSEEEE
T ss_pred -ceeeeeEeeeecccccccccccccchhhhhhhhhhcccHHHHHHHHHHHhcCCCcCCCccCHHHHhhhhccCCCCccEE
Confidence 23578999999999999988754 5577889999999999999999999999999999999999999999 79999999
Q ss_pred EEEEeCCC--ChhhhHHHHHHHHHhhhcc
Q 005960 329 MVACLNPG--EYQESVHTVSLAARSRHIS 355 (667)
Q Consensus 329 mIa~vsP~--~~~ETlsTL~fA~rar~I~ 355 (667)
||+||+|+ +++||++||+||+|||+|.
T Consensus 334 ~i~~vsp~~~~~~eTl~TL~fa~rak~It 362 (362)
T d1v8ka_ 334 MIAMISPGISSCEYTLNTLRYADRVKELS 362 (362)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCChhhHHHHHHHHHHHHHHhcCC
Confidence 99999997 6899999999999999883
No 3
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Probab=100.00 E-value=5.6e-75 Score=623.24 Aligned_cols=327 Identities=35% Similarity=0.553 Sum_probs=291.7
Q ss_pred CCCCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCchhHHHHhh
Q 005960 23 STSSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYSE 102 (667)
Q Consensus 23 ~~~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~~~ 102 (667)
+...+|+|+|||||+...|...+ ...++.+.+.+. +.+... ...+.|.||+||++++ +|++||+..
T Consensus 2 ~~~~~I~V~vRvRP~~~~E~~~~---~~~~v~~~~~~~--------~~~~~~--~~~~~f~FD~vf~~~~-~q~~vy~~~ 67 (354)
T d1goja_ 2 SSANSIKVVARFRPQNRVEIESG---GQPIVTFQGPDT--------CTVDSK--EAQGSFTFDRVFDMSC-KQSDIFDFS 67 (354)
T ss_dssp CSSCBCEEEEEECCCCHHHHTTT---CCBCEEECSTTE--------EEECST--TCCEEEECSEEECTTC-CHHHHHHHH
T ss_pred CCCCCEEEEEEcCCCChHHHhcC---CceEEEEECCCe--------EEEcCC--CCcceEECCeEcCCCC-CHHHHHHHH
Confidence 35678999999999999987654 345666655422 222222 2346899999999986 889999999
Q ss_pred ccchhhhhcCCCCEEEEeeccCCCCCcceeccCC----CCCCChHHHHHHHHhhhccC----CceEEEEEEEEecceeee
Q 005960 103 VNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSE----ERPGLMPLAMSKILSICQST----GSTAEISYYEVYMDRCYD 174 (667)
Q Consensus 103 v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~----~~~GLipral~~LF~~~~~~----~~~v~vS~~EIYnE~v~D 174 (667)
++|+|+++++|||+||||||||||||||||+|.. +.+|||||++++||...+.. .+.|++||+|||+|+++|
T Consensus 68 ~~plv~~~l~G~n~ti~aYG~tgSGKT~Tm~G~~~~~~~~~Giipr~l~~l~~~~~~~~~~~~~~v~vS~~EIyne~i~D 147 (354)
T d1goja_ 68 IKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRD 147 (354)
T ss_dssp THHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHhhccCceeEEecccCCCCcceeeecccccCcccceecchhHHHHhhhhcccccCceEEEEeehhheecceEee
Confidence 9999999999999999999999999999999953 45799999999999977543 468999999999999999
Q ss_pred ccCCCCCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCCCCceE
Q 005960 175 LLEVKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAAL 254 (667)
Q Consensus 175 LL~~~~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~ 254 (667)
||.+....+.+++++++++++.|++++.|.+++|+..++..|..+|..++|.+|..|||||+||+|+|.+...+ .+...
T Consensus 148 LL~~~~~~l~~~e~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~-~~~~~ 226 (354)
T d1goja_ 148 LLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVE-TGSAK 226 (354)
T ss_dssp TTSTTCCSCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETT-TTEEE
T ss_pred cccccccceeeeeecCCCEeecCceeecchhHHHHHHHHhhcccccccccccccccccccceEEEEEEEEeecC-CCCeE
Confidence 99998888999999999999999999999999999999999999999999999999999999999999887654 34557
Q ss_pred EEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCC-CCCCCCCchhhhhhhcccCCCccceEEEEe
Q 005960 255 TGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNK-PRVPYRESKLTRILQDSLGGTSHALMVACL 333 (667)
Q Consensus 255 ~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~-~~IPYRdSkLTrLLqdsLgGnskt~mIa~v 333 (667)
.++|+||||||+|+..++++.|.+++|+..||+||.+|++||.+|++++ .|||||+||||+||+|+||||++|+||+||
T Consensus 227 ~s~l~~vDLAGsE~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~aL~~~~~~~iPyR~SkLT~lLkd~Lgg~s~t~~I~~i 306 (354)
T d1goja_ 227 SGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINC 306 (354)
T ss_dssp EEEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEE
T ss_pred EEEEEEeeccCcccccccCCccchhhhhhhhhHHHHHHHHHHHHHhcCCCCcCCcccCHHHHHHHHhcCCCCeEEEEEEE
Confidence 8999999999999999999999999999999999999999999999864 799999999999999999999999999999
Q ss_pred CCC--ChhhhHHHHHHHHHhhhccccccccccc
Q 005960 334 NPG--EYQESVHTVSLAARSRHISNTLPSAQKV 364 (667)
Q Consensus 334 sP~--~~~ETlsTL~fA~rar~I~N~~~~~~~~ 364 (667)
+|+ +|+||++||+||++|++|+|.+..|...
T Consensus 307 sp~~~~~~eTl~TL~fa~~~~~i~~~~~~n~~~ 339 (354)
T d1goja_ 307 SPSSYNDAETLSTLRFGMRAKSIKNKAKVNAEL 339 (354)
T ss_dssp CCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSS
T ss_pred CCCcccHHHHHHHHHHHHHHhccCccceEcCCC
Confidence 997 6999999999999999999988777543
No 4
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}
Probab=100.00 E-value=2e-75 Score=624.61 Aligned_cols=322 Identities=34% Similarity=0.546 Sum_probs=266.3
Q ss_pred CeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecC-CCCCCceeeeeceeeCCCCCchhHHHHhhccc
Q 005960 27 KVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD-PDTIRSECYQLDSFFGQEDESVSKIFYSEVNP 105 (667)
Q Consensus 27 ~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~-~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~~~v~p 105 (667)
||||+|||||+...|.... ...++.+.+... .+.+.... ......+.|.||+||++++ +|++||+..+.|
T Consensus 1 NI~V~vRvRP~~~~e~~~~---~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~f~FD~vf~~~~-~q~~vy~~~~~~ 71 (345)
T d1x88a1 1 NIQVVVRCRPFNLAERKAS---AHSIVECDPVRK-----EVSVRTGGLADKSSRKTYTFDMVFGAST-KQIDVYRSVVCP 71 (345)
T ss_dssp CCEEEEEECCCCHHHHHTT---CCCCEEEETTTT-----EEEEEEEEETTEEEEEEEECSEEECTTC-CHHHHHHHHHHH
T ss_pred CeEEEEEECCCChhhhccC---CCeEEEEcCCCc-----eEEEecCCCCCCCCcceEecCEEeCCCC-CHHHHHHHHHHH
Confidence 6999999999999886544 345666654432 23332211 1222356899999999986 889999999999
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCcceeccCCCC-----------CCChHHHHHHHHhhhccC--CceEEEEEEEEeccee
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTMQGSEER-----------PGLMPLAMSKILSICQST--GSTAEISYYEVYMDRC 172 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~-----------~GLipral~~LF~~~~~~--~~~v~vS~~EIYnE~v 172 (667)
+|+.+++|||+||||||||||||||||+|+... +||+||++++||+.++.. .+.|++||+|||+|++
T Consensus 72 lv~~~l~G~n~~i~aYGqtgSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~v~vS~~EIy~e~v 151 (345)
T d1x88a1 72 ILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEEL 151 (345)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEE
T ss_pred hHHHHhccCCceEEeeeeccccceEEeeecCCcccccccccCccCCcHHHHHHHHHHhhhccCceEEEEEEEEEEECCee
Confidence 999999999999999999999999999998643 699999999999987764 4589999999999999
Q ss_pred eeccCCCCC-----ceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeC
Q 005960 173 YDLLEVKTK-----EISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLG 247 (667)
Q Consensus 173 ~DLL~~~~~-----~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~ 247 (667)
+|||++... .+...++..++++|.|++++.|.+++|++.+|..|.++|+++.|.+|..|||||+||+|+|.....
T Consensus 152 ~DLL~~~~~~~~~~~~~~~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SsRsH~i~~i~i~~~~~ 231 (345)
T d1x88a1 152 FDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKET 231 (345)
T ss_dssp EETTCTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEE
T ss_pred EECCCCCCcccccceeeecccCCCCEEEcCCEEEEeCCHHHHHHHHHhhhccccccccCccccccccceEEEEEEEEeec
Confidence 999986532 345556677889999999999999999999999999999999999999999999999999987644
Q ss_pred C--CCCceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcccCCCc
Q 005960 248 D--DSKAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTS 325 (667)
Q Consensus 248 ~--~~~~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqdsLgGns 325 (667)
. .......|+|+||||||+||..+.+..|.++.|+..||+||++|++||.+|.+++.|||||+||||+||||+|||++
T Consensus 232 ~~~~~~~~~~s~l~~vDLAGsEr~~~~~~~~~~~~e~~~in~Sl~~L~~vi~al~~~~~~iPyR~SkLT~lL~d~Lgg~s 311 (345)
T d1x88a1 232 TIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRT 311 (345)
T ss_dssp CTTSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSS
T ss_pred cCCCCCceEeeeEEEEecCCccccccccchhhhhcccccccchHHHHHHHHHHHhcCCCcCCCccCHHHHHhHHhcCCCC
Confidence 3 33345679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEeCCC--ChhhhHHHHHHHHHhhhcccc
Q 005960 326 HALMVACLNPG--EYQESVHTVSLAARSRHISNT 357 (667)
Q Consensus 326 kt~mIa~vsP~--~~~ETlsTL~fA~rar~I~N~ 357 (667)
+|+||+||+|+ +++||++||+||+||++|+|+
T Consensus 312 ~t~~i~~vsp~~~~~~eTl~tL~fa~~~~~I~nk 345 (345)
T d1x88a1 312 RTSIIATISPASLNLEETLSTLEYAHRAKNILNK 345 (345)
T ss_dssp EEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCC
T ss_pred cEEEEEEeCCchhhHHHHHHHHHHHHHhhhccCC
Confidence 99999999997 689999999999999999983
No 5
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}
Probab=100.00 E-value=4.6e-74 Score=615.02 Aligned_cols=317 Identities=33% Similarity=0.545 Sum_probs=269.3
Q ss_pred CCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCC-------CchhHH
Q 005960 26 SKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQED-------ESVSKI 98 (667)
Q Consensus 26 ~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~-------~sQ~~V 98 (667)
..|||+|||||+...|...+ ..+++.+.+. .+.+.-........+.|.||+||+++. .+|++|
T Consensus 1 ~sIrV~vRvRP~~~~E~~~~---~~~~~~~~~~-------~~~~~~~~~~~~~~k~f~FD~vf~~~~~~~~~~~~sQ~~v 70 (349)
T d2zfia1 1 ASVKVAVRVRPFNSREMSRD---SKCIIQMSGS-------TTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQV 70 (349)
T ss_dssp CCEEEEEEECCCCHHHHHTT---CCBCEEEETT-------EEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHH
T ss_pred CcEEEEEEeCCCChhHhcCC---CcEEEEECCC-------cEEEECCCCCCcCCeeEEeceEeCCCCCccccccccHHHH
Confidence 36999999999999987654 4456666543 222222222223456899999999864 378999
Q ss_pred HHhhccchhhhhcCCCCEEEEeeccCCCCCcceeccCCC--CCCChHHHHHHHHhhhcc-----CCceEEEEEEEEecce
Q 005960 99 FYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEE--RPGLMPLAMSKILSICQS-----TGSTAEISYYEVYMDR 171 (667)
Q Consensus 99 f~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~--~~GLipral~~LF~~~~~-----~~~~v~vS~~EIYnE~ 171 (667)
|+..+.|+|+.+++|||+||||||||||||||||+|+++ ++|||||++++||+.++. ..+.|.+||+|||||+
T Consensus 71 y~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~G~~~~~~~Glipr~l~~lf~~~~~~~~~~~~~~v~~S~~Eiyne~ 150 (349)
T d2zfia1 71 YRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCER 150 (349)
T ss_dssp HHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTE
T ss_pred HHHhhHHHHHHHHhccCceeeeeccCCCCCceeeccCccccccCchHHHHhhhhhhccccccCCcceEEEEEeeeeeCCE
Confidence 999999999999999999999999999999999999864 789999999999998753 2367999999999999
Q ss_pred eeeccCCCC-CceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCCC
Q 005960 172 CYDLLEVKT-KEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDS 250 (667)
Q Consensus 172 v~DLL~~~~-~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~ 250 (667)
+||||.+.. ..+.+++++.+++++.|++++.|.+.+|+..+|..|..+|.++.|.+|..|||||+||+|.+.+...+..
T Consensus 151 i~DLL~~~~~~~~~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~ssrsh~i~~i~i~~~~~~~~ 230 (349)
T d2zfia1 151 VRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAE 230 (349)
T ss_dssp EEETTCTTTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTT
T ss_pred EEecccccccCCceEEecCCCCcEEEEeEEEeccCHHHHHHHHHhcccCeEeccCCCccccccccceEEEEEEEEecccC
Confidence 999998754 5688999999999999999999999999999999999999999999999999999999999987654322
Q ss_pred ---CceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhcc------------CCCCCCCCCchhhh
Q 005960 251 ---KAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNN------------NKPRVPYRESKLTR 315 (667)
Q Consensus 251 ---~~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~------------~~~~IPYRdSkLTr 315 (667)
.....|+|+||||||+||.++++..|.+++|+..||+||++|++||.+|++ +..|||||+||||+
T Consensus 231 ~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~e~~~IN~SL~~L~~vi~aL~~~~~~~~~~~~~~~~~~IPyR~SkLT~ 310 (349)
T d2zfia1 231 TNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTW 310 (349)
T ss_dssp TTCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHH
T ss_pred CCcccceeeEEEEeecccchhhhhcCCcccchhhccchhhHHHHHHHHHHHHHhhhcccccccccCCCCccCCcCCHHHH
Confidence 223469999999999999999999999999999999999999999999974 23689999999999
Q ss_pred hhhcccCCCccceEEEEeCCC--ChhhhHHHHHHHHHhh
Q 005960 316 ILQDSLGGTSHALMVACLNPG--EYQESVHTVSLAARSR 352 (667)
Q Consensus 316 LLqdsLgGnskt~mIa~vsP~--~~~ETlsTL~fA~rar 352 (667)
||||+|||+++|+||+||+|+ +|+||++||+||+|||
T Consensus 311 lL~d~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~fa~rak 349 (349)
T d2zfia1 311 LLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 349 (349)
T ss_dssp HTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCCccEEEEEEeCCChhhHHHHHHHHHHHHhcC
Confidence 999999999999999999997 6999999999999986
No 6
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=4.5e-74 Score=608.86 Aligned_cols=311 Identities=35% Similarity=0.560 Sum_probs=281.6
Q ss_pred CCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCchhHHHHhhcc
Q 005960 25 SSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYSEVN 104 (667)
Q Consensus 25 ~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~~~v~ 104 (667)
..+|||+|||||+++.|...+ ...++.+.+... +.. ..+.|.||+||++++ +|++||+..++
T Consensus 4 ~~NI~V~vRvRP~~~~e~~~~---~~~~~~~~~~~~--------~~~------~~~~f~FD~vf~~~~-~q~~vf~~~~~ 65 (323)
T d1bg2a_ 4 ECNIKVMCRFRPLNESEVNRG---DKYIAKFQGEDT--------VVI------ASKPYAFDRVFQSST-SQEQVYNDCAK 65 (323)
T ss_dssp SCEEEEEEEECCCCHHHHHHT---CCBCCEEETTTE--------EEE------TTEEEECSEEECTTC-CHHHHHHHHTH
T ss_pred CCCEEEEEEeCCCChHHhccC---CceEEEECCCCe--------EEE------CCceeECCEEECCCC-CHHHHHHHHHH
Confidence 457999999999999887654 233444444322 221 235799999999986 88999999999
Q ss_pred chhhhhcCCCCEEEEeeccCCCCCcceeccCCCCC---CChHHHHHHHHhhhcc----CCceEEEEEEEEecceeeeccC
Q 005960 105 PLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERP---GLMPLAMSKILSICQS----TGSTAEISYYEVYMDRCYDLLE 177 (667)
Q Consensus 105 plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~---GLipral~~LF~~~~~----~~~~v~vS~~EIYnE~v~DLL~ 177 (667)
|+|+.+++|||+||||||||||||||||+|+..++ ||+||++.+||+.++. ..+.|.+||+|||||++||||.
T Consensus 66 ~lv~~~l~G~n~~i~aYGqtgSGKTyT~~G~~~~~~~~gii~r~l~~l~~~~~~~~~~~~~~v~~S~~EIyne~i~DLL~ 145 (323)
T d1bg2a_ 66 KIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLD 145 (323)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSC
T ss_pred HHHHHHHcCCCcceeeecccCCCCceeccCCcccccccchhhhHHHHHHhhhhccccccceEEEEEEEEEEcCccccccc
Confidence 99999999999999999999999999999977654 9999999999997753 3468999999999999999999
Q ss_pred CCCCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCCCCceEEEE
Q 005960 178 VKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTGK 257 (667)
Q Consensus 178 ~~~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~sk 257 (667)
+....+.++++..++++++|++++.|.+++|+..++..|.++|+++.|.+|..|||||+||+|++.+..... .....|+
T Consensus 146 ~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~ssRsh~i~~i~v~~~~~~~-~~~~~s~ 224 (323)
T d1bg2a_ 146 VSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQT-EQKLSGK 224 (323)
T ss_dssp TTCCSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTT-CCEEEEE
T ss_pred ccccceeEeeccccceeecCCEEEEEeccHhHhHHhhhcccceeecccCCCCCCCccceEEEEEEEEEeCCC-CcEEEEE
Confidence 998899999999999999999999999999999999999999999999999999999999999999876543 4556899
Q ss_pred EEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcccCCCccceEEEEeCCC-
Q 005960 258 LNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG- 336 (667)
Q Consensus 258 L~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqdsLgGnskt~mIa~vsP~- 336 (667)
|+||||||+|+..+++..+.++.|+..||+||++|++||.+|++++.|||||+||||+||+|+|||+++|+||+||+|+
T Consensus 225 l~~vDLAGse~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~iPyR~SkLT~lL~d~L~g~~~t~~I~~isp~~ 304 (323)
T d1bg2a_ 225 LYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSS 304 (323)
T ss_dssp EEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBG
T ss_pred EEEEecccccccccccchhhhhhhhhcccccHHHHHHHHHHHhcCCCccCCccCHHHHHHHHhcCCCccEEEEEEECCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -ChhhhHHHHHHHHHhhhc
Q 005960 337 -EYQESVHTVSLAARSRHI 354 (667)
Q Consensus 337 -~~~ETlsTL~fA~rar~I 354 (667)
+++||++||+||+|||+|
T Consensus 305 ~~~~eTl~tL~fa~r~k~I 323 (323)
T d1bg2a_ 305 YNESETKSTLLFGQRAKTI 323 (323)
T ss_dssp GGHHHHHHHHHHHHTSCCC
T ss_pred hhHHHHHHHHHHHHHhcCC
Confidence 699999999999999986
No 7
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=100.00 E-value=1.2e-73 Score=607.47 Aligned_cols=316 Identities=31% Similarity=0.517 Sum_probs=264.4
Q ss_pred eEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCchhHHHHhhccchh
Q 005960 28 VRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYSEVNPLI 107 (667)
Q Consensus 28 VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~~~v~plV 107 (667)
|||+|||||+.+.|.... ...++.+.+...+.. +..............+.|.||+||++++ +|++||+..++|+|
T Consensus 2 IkV~vRvRP~~~~E~~~~---~~~~v~~~~~~~~~v-~~~~~~~~~~~~~~~~~F~fD~Vf~~~~-~q~~vy~~~~~plv 76 (330)
T d1ry6a_ 2 IKVVVRKRPLSELEKKKK---DSDIITVKNNCTLYI-DEPRYKVDMTKYIERHEFIVDKVFDDTV-DNFTVYENTIKPLI 76 (330)
T ss_dssp EEEEEEECCCCHHHHHTT---CCBCEEEEETTEEEE-EEEEEETTTEEEEEEEEEECSEEECTTC-CHHHHHHHHTHHHH
T ss_pred EEEEEEeCCCChHHHhcC---CceEEEECCCcEEEE-cCCccccccccCcCcceEeCCeecCCCC-CHHHHHHHHHHHHH
Confidence 899999999999887654 345666655433211 1111111111112346899999999985 88999999999999
Q ss_pred hhhc-CCCCEEEEeeccCCCCCcceeccCC-----CCCCChHHHHHHHHhhhcc----CCceEEEEEEEEecceeeeccC
Q 005960 108 PGIF-HGRNATVFAYGATGSGKTYTMQGSE-----ERPGLMPLAMSKILSICQS----TGSTAEISYYEVYMDRCYDLLE 177 (667)
Q Consensus 108 ~~vl-~G~N~tIfaYGqTGSGKTyTm~G~~-----~~~GLipral~~LF~~~~~----~~~~v~vS~~EIYnE~v~DLL~ 177 (667)
++++ +|||+||||||||||||||||+|+. +++||+||++++||+.++. ..+.|.+||+|||||+++|||+
T Consensus 77 ~~~~~~G~n~~i~aYGqTGSGKTyTm~G~~~~~~~~~~Giipr~~~~lf~~~~~~~~~~~~~v~~S~~EIyne~i~DLL~ 156 (330)
T d1ry6a_ 77 IDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQ 156 (330)
T ss_dssp HHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCC
T ss_pred HHHHhcCCCeEEEeeeccccccceeeecccccccccCCCchhHHHhhhhhhhhhhcccceEEEEEEEEeeeccccccccc
Confidence 9988 5999999999999999999999975 5689999999999987642 4578999999999999999998
Q ss_pred CCCCceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCCCCceEEEE
Q 005960 178 VKTKEISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAALTGK 257 (667)
Q Consensus 178 ~~~~~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~~sk 257 (667)
+.. .+.+++++.+++++.|++++.|.+.+|+..+|..|..+|.++.|.+|..|||||+||+|++.... .....|+
T Consensus 157 ~~~-~~~~~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsh~i~~i~v~~~~----~~~~~s~ 231 (330)
T d1ry6a_ 157 KRK-MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN----KNTSLGK 231 (330)
T ss_dssp C------------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT----TTEEEEE
T ss_pred ccc-cceeeecCCCCccccCceEEEEeeccchhhhhhcccccccccccccccccCCcceEEEEEEEecc----cccccce
Confidence 654 57788999999999999999999999999999999999999999999999999999999997543 2345799
Q ss_pred EEEEECCCCCCccccccccch-hhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcccCCCccceEEEEeCCC
Q 005960 258 LNLIDLAGNEDNRRTCNEGIR-LLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLNPG 336 (667)
Q Consensus 258 L~fVDLAGSEr~~~t~~~g~r-l~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqdsLgGnskt~mIa~vsP~ 336 (667)
|+||||||+||..++...+.+ ..|+..||+||.+|++||.+|++++.|||||+||||+||||+||||++|+||+||+|+
T Consensus 232 l~~vDLAGsEr~~~~~~~~~~~~~e~~~IN~sL~~L~~vi~al~~~~~~iPyR~SkLT~lL~d~lggns~t~~I~~vsp~ 311 (330)
T d1ry6a_ 232 IAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPT 311 (330)
T ss_dssp EEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCB
T ss_pred eeeecccccccccccccCCchhhhhhhhhhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEECCc
Confidence 999999999999998887776 4699999999999999999999999999999999999999999999999999999997
Q ss_pred --ChhhhHHHHHHHHHhhh
Q 005960 337 --EYQESVHTVSLAARSRH 353 (667)
Q Consensus 337 --~~~ETlsTL~fA~rar~ 353 (667)
+++||++||+||+|||+
T Consensus 312 ~~~~~eTl~tL~fa~rak~ 330 (330)
T d1ry6a_ 312 ISCCEQTLNTLRYSSRVKN 330 (330)
T ss_dssp GGGHHHHHHHHHHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHhcC
Confidence 69999999999999984
No 8
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}
Probab=100.00 E-value=1.1e-72 Score=602.87 Aligned_cols=321 Identities=31% Similarity=0.452 Sum_probs=257.6
Q ss_pred CCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecCCCCCCceeeeeceeeCCCCCchhHHHHhhccc
Q 005960 26 SKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKDPDTIRSECYQLDSFFGQEDESVSKIFYSEVNP 105 (667)
Q Consensus 26 ~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~~~v~p 105 (667)
|+|||+|||||+.+.|.. ....++.+...+........... ........+.|.||+||++++ +|++||+. +.|
T Consensus 1 G~IrV~vRvRP~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~FD~vf~~~~-~q~~vy~~-v~~ 73 (342)
T d1f9va_ 1 GNIRVYCRIRPALKNLEN----SDTSLINVNEFDDNSGVQSMEVT-KIQNTAQVHEFKFDKIFDQQD-TNVDVFKE-VGQ 73 (342)
T ss_dssp CEEEEEEEECCCCTTTCC----CTTEEEEECCCBTTTTBEEEEEE-EGGGTTCEEEEEESEEECTTC-CHHHHHHH-HHH
T ss_pred CcEEEEEEeCcCCccccc----CCCceEEeeccCCcceeeecccc-ccCCCCCceEeecCeEeCCCC-CHHHHHHH-hhh
Confidence 689999999999877632 23455665443221111111111 112233467899999999986 88999985 679
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc-----CCceEEEEEEEEecceeeeccCCCC
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-----TGSTAEISYYEVYMDRCYDLLEVKT 180 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~-----~~~~v~vS~~EIYnE~v~DLL~~~~ 180 (667)
+|+.+++|||+||||||||||||||||+|+ ++||+||++++||+.++. ..+.+++||+|||||+|||||++..
T Consensus 74 ~v~~~l~G~n~~i~aYGqtgSGKT~T~~G~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~ 151 (342)
T d1f9va_ 74 LVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDN 151 (342)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC---
T ss_pred hhcchhcccccceeeeeccCCccccccccC--cCchhHHHHHHHHhhhhhhhccccccceeeeeeeeccCeeEECCCCCC
Confidence 999999999999999999999999999995 579999999999987642 4568999999999999999998654
Q ss_pred Cc---------eeee-eCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCCC
Q 005960 181 KE---------ISIL-DDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDS 250 (667)
Q Consensus 181 ~~---------l~i~-ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~ 250 (667)
.. +.++ ++..+++++.|++++.|.+.+|+..++..|.++|.+++|.+|..|||||+||+|++.+... ..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~N~~ssrSh~i~~i~v~~~~~-~~ 230 (342)
T d1f9va_ 152 NNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNA-KT 230 (342)
T ss_dssp ----------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC---
T ss_pred CccccccccceeeeeecCCCCcEEEeeeEEEEecchHHHHHHHhhhhhccccccccccccCcccceeEEEEEEEecC-Cc
Confidence 31 2333 4566789999999999999999999999999999999999999999999999999987654 33
Q ss_pred CceEEEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccC---CCCCCCCCchhhhhhhcccCCCccc
Q 005960 251 KAALTGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNN---KPRVPYRESKLTRILQDSLGGTSHA 327 (667)
Q Consensus 251 ~~~~~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~---~~~IPYRdSkLTrLLqdsLgGnskt 327 (667)
.....++|+||||||+|+..++...+.+++|+..||+||++|++||.+|+++ +.|||||+||||+||||+||||++|
T Consensus 231 ~~~~~s~l~~vDLAGse~~~~~~~~~~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~~~~iPyR~SkLT~lL~d~lgg~s~t 310 (342)
T d1f9va_ 231 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKT 310 (342)
T ss_dssp CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEE
T ss_pred cceeeeeeeeeeccCCcccccccchhhhhhhhhhccHHHHHHHHHHHHHhcccCCCCcCCCccCHHHHHHHHhcCCCceE
Confidence 4457899999999999999999999999999999999999999999999864 4699999999999999999999999
Q ss_pred eEEEEeCCC--ChhhhHHHHHHHHHhhhccc
Q 005960 328 LMVACLNPG--EYQESVHTVSLAARSRHISN 356 (667)
Q Consensus 328 ~mIa~vsP~--~~~ETlsTL~fA~rar~I~N 356 (667)
+||+||+|+ +++||++||+||+|||+|+.
T Consensus 311 ~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~ 341 (342)
T d1f9va_ 311 LMFVNISPSSSHINETLNSLRFASKVNSTRL 341 (342)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHHHHCCTTT
T ss_pred EEEEEECCchhhHHHHHHHHHHHHHhhccee
Confidence 999999997 79999999999999999975
No 9
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=100.00 E-value=2.4e-72 Score=605.84 Aligned_cols=312 Identities=33% Similarity=0.509 Sum_probs=262.2
Q ss_pred CCCeEEEEEcCCCCChhhhhhcCCCceEEEEcCCCCcccCcceEEEecC---CCCCCceeeeeceeeCCCCCchhHHHHh
Q 005960 25 SSKVRVIVRVRPFLSQEIAAKNGNSICCISVLDRGSLSCNEEVAVYLKD---PDTIRSECYQLDSFFGQEDESVSKIFYS 101 (667)
Q Consensus 25 ~~~VkV~vRvRP~~~~E~~~~~~~~~~~i~v~~~~~~~~~~~~~v~~~~---~~~~~~~~F~FD~Vf~~~~~sQ~~Vf~~ 101 (667)
+|+|||+|||||+++.|.... ..++...+... +.+...+ ......+.|.||+||++++ +|++||+
T Consensus 44 ~gnIkV~vRvRP~~~~E~~~~----~~~~~~~~~~~------v~~~~~~~~~~~~~~~~~F~FD~vf~~~~-~Q~~Vy~- 111 (368)
T d2ncda_ 44 RGNIRVFCRIRPPLESEENRM----CCTWTYHDEST------VELQSIDAQAKSKMGQQIFSFDQVFHPLS-SQSDIFE- 111 (368)
T ss_dssp HCSEEEEEEECCCCGGGTTSC----BCEEEEETTTE------EEEECSCHHHHTTTCCCEEECSEEECTTC-CHHHHHT-
T ss_pred cCCEEEEEEeCCCCchhcCCC----CcEEEeCCCCe------EEEccCCccccCCcCceeeECCeEECCCC-CccchHH-
Confidence 589999999999998885432 22333333211 2222111 1122346899999999986 8899996
Q ss_pred hccchhhhhcCCCCEEEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhcc-----CCceEEEEEEEEecceeeecc
Q 005960 102 EVNPLIPGIFHGRNATVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQS-----TGSTAEISYYEVYMDRCYDLL 176 (667)
Q Consensus 102 ~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~-----~~~~v~vS~~EIYnE~v~DLL 176 (667)
.+.|+|+++++|||+||||||||||||||||+|+++++||+||++++||+.+.. ..+.|.+||+|||||++||||
T Consensus 112 ~v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~~~~Giipr~~~~Lf~~~~~~~~~~~~~~v~vS~~EIyne~i~DLL 191 (368)
T d2ncda_ 112 MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLL 191 (368)
T ss_dssp TTHHHHHHHHTTCEEEEEEECSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEESSSCEEETT
T ss_pred HHHHHHHHHhcccceeEEeeccCCCccceEecccccccchhhHHHHHHhhhhhhhccccccceEEEEEEEEecceeeccc
Confidence 678999999999999999999999999999999999999999999999987643 346899999999999999999
Q ss_pred CCCCC--ceeeeeCCCCCeEeeCcEEeecCChHHHHHHHHHHHhcccccccCCCCCCCCcEEEEEEEEEEEeCCCCCceE
Q 005960 177 EVKTK--EISILDDKDGQLHLKGLSRVPVNSMTEFQEIFSRGIQRRKVAHTGLNDVSSRSHGVLVISVSTLLGDDSKAAL 254 (667)
Q Consensus 177 ~~~~~--~l~i~ed~~g~~~v~gls~v~V~S~~e~~~ll~~g~~~R~~~sT~~N~~SSRSH~If~I~v~~~~~~~~~~~~ 254 (667)
.+... ...+++++.+++++.|++++.|.+++++..++..|.++|..+.|.+|..|||||+||+|++.+.... .....
T Consensus 192 ~~~~~~~~~~~~~d~~~~~~v~g~~~~~v~~~~~~~~~l~~g~~~r~~~~t~~n~~ssrSh~i~~i~v~~~~~~-~~~~~ 270 (368)
T d2ncda_ 192 SNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAE-KQEIS 270 (368)
T ss_dssp CSSCCCCCEEECTTCTTCEEETTCCCEEECSHHHHHHHHHHHHHHSCCCSSSCTTTTTTCEEEEEEEEEEECTT-SCCEE
T ss_pred ccccccccceeeccccccccccccceeccCCHHHHHHHHHHHHhhcccccccccccccccceEEEEEEEEEecC-CCceE
Confidence 87654 3556688999999999999999999999999999999999999999999999999999999886543 34557
Q ss_pred EEEEEEEECCCCCCccccccccchhhHHhhhhhcHHHHHHHHHHhccCCCCCCCCCchhhhhhhcccCCCccceEEEEeC
Q 005960 255 TGKLNLIDLAGNEDNRRTCNEGIRLLESAKINQSLFALSNVIHALNNNKPRVPYRESKLTRILQDSLGGTSHALMVACLN 334 (667)
Q Consensus 255 ~skL~fVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aL~~vI~aL~~~~~~IPYRdSkLTrLLqdsLgGnskt~mIa~vs 334 (667)
.|+|+||||||+|+... +.+++|+..||+||++|++||.+|++++.|||||+||||+||||+||||++|+||+||+
T Consensus 271 ~s~l~~VDLAGse~~~~----~~~~~E~~~IN~SL~aL~~vi~aL~~~~~~iPyR~SkLT~lL~dsLggns~t~mI~~is 346 (368)
T d2ncda_ 271 VGSINLVDLAGSESPKT----STRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVS 346 (368)
T ss_dssp EEEEEEEECCCCCCC--------------CTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGSSSSCEEEEEEEEC
T ss_pred eeeeeeeeeccccccch----hhhhcccccchhhHHHHHHHHHHHhcCCCCCCCcCCHHHHHHHHhcCCCCeEEEEEEEC
Confidence 89999999999998643 56899999999999999999999999999999999999999999999999999999999
Q ss_pred CC--ChhhhHHHHHHHHHhhh
Q 005960 335 PG--EYQESVHTVSLAARSRH 353 (667)
Q Consensus 335 P~--~~~ETlsTL~fA~rar~ 353 (667)
|+ +|+||++||+||+|||+
T Consensus 347 p~~~~~~eTl~TL~fa~rak~ 367 (368)
T d2ncda_ 347 PFQDCFQESVKSLRFAASVNS 367 (368)
T ss_dssp CBGGGHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHHHHHHhc
Confidence 97 69999999999999984
No 10
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]}
Probab=99.50 E-value=7.9e-15 Score=118.07 Aligned_cols=57 Identities=39% Similarity=0.410 Sum_probs=54.5
Q ss_pred cccccCcccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 586 EYIDFLNTASREELVELKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 586 ~~~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
..+||||||+.++|+.|||||+++|++||+|| ||++++||.+| ||+++.+++|++++
T Consensus 6 ~~~idiNtA~~~eL~~lpgig~~~A~~Iv~~R---~f~s~edL~~v~gi~~~~~~~i~~~l 63 (65)
T d2duya1 6 QTPVSLNEASLEELMALPGIGPVLARRIVEGR---PYARVEDLLKVKGIGPATLERLRPYL 63 (65)
T ss_dssp GCSEETTTCCHHHHTTSTTCCHHHHHHHHHTC---CCSSGGGGGGSTTCCHHHHHHHGGGE
T ss_pred CCCcccccCCHHHHHHCCCCCHHHHHHHHHcC---CCCCHHHHHhCCCCCHHHHHHHHHHc
Confidence 45799999999999999999999999999999 89999999999 99999999999876
No 11
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=99.45 E-value=1.8e-14 Score=123.30 Aligned_cols=65 Identities=25% Similarity=0.246 Sum_probs=60.4
Q ss_pred cccccccCcccCHHHHhcCCCCCHHHHHHHHHHHhcC-CCCCHHHHhhc-CCCHHHHHHHhcccccc
Q 005960 584 VQEYIDFLNTASREELVELKGIGQRLADYICELRQSS-PVKSLSDLEKI-GLSTKQVYNLFGKAAKG 648 (667)
Q Consensus 584 ~~~~~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~-pf~~~~dL~~v-Gi~~~~~~~l~~~~~~~ 648 (667)
+....||||+|+.++|+.|||||+++|++||+||+++ ||++++||.+| ||+++.+++++..+++.
T Consensus 22 v~~vgidiN~As~~~L~~lpGig~~~A~~Iv~~R~~~G~f~s~edL~~v~gi~~k~~e~i~~~l~I~ 88 (90)
T d3bzka1 22 VNAVGVDVNTASAALLARISGLNSTLAQNIVAHRDANGAFRTRDELKKVSRLGEKTFEQAAGFLRVM 88 (90)
T ss_dssp HHHHCEETTTCCHHHHTTSTTCCHHHHHHHHHHHHHHCSCSSSGGGGGSTTCCHHHHHHHHTTEECT
T ss_pred hhhcceehhhCCHHHHhHCCCCCHHHHHHHHHHHHHcCCCCCHHHHhhCCCCCHHHHHHhcCCEeeC
Confidence 3445699999999999999999999999999999999 99999999999 99999999999998753
No 12
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.43 E-value=1.7e-14 Score=123.58 Aligned_cols=63 Identities=30% Similarity=0.530 Sum_probs=58.0
Q ss_pred cccccCcccCHHHHhcCCCCCHHHHHHHHHHHhcC-CCCCHHHHhhc-CCCHHHHHHHhcccccc
Q 005960 586 EYIDFLNTASREELVELKGIGQRLADYICELRQSS-PVKSLSDLEKI-GLSTKQVYNLFGKAAKG 648 (667)
Q Consensus 586 ~~~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~-pf~~~~dL~~v-Gi~~~~~~~l~~~~~~~ 648 (667)
..+++||+|+.++|..|||||+++|++||+||+++ ||++++||.+| ||+++.+++|++.-+.+
T Consensus 22 ~~l~~iNtAs~~eL~~lpgig~~~A~~II~yR~~~G~f~sledL~~V~Gi~~k~~eki~k~~~l~ 86 (91)
T d2edua1 22 KILDLLNEGSARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERVEGITGKQMESFLKANILG 86 (91)
T ss_dssp HHHHHHHHSCHHHHHHSTTCCHHHHHHHHHHHHHHCCCSSGGGGGGSTTCCHHHHHHHHHHHHHH
T ss_pred ccccccccCCHHHHhhCCCCCHHHHHHHHHHHHHcCCCCCHHHHhcCCCCCHHHHHHHHHcCchh
Confidence 45678999999999999999999999999999999 99999999999 99999999999765443
No 13
>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=99.39 E-value=7.8e-14 Score=120.27 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=54.2
Q ss_pred cccccCcccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhcccc
Q 005960 586 EYIDFLNTASREELVELKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKAA 646 (667)
Q Consensus 586 ~~~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 646 (667)
..+||||+|+.++|+.|||||+++|++||++| ||++++||.+| |||++++++|+...-
T Consensus 16 g~kidlN~As~~eL~~lpGIg~~~A~~Iv~~g---pf~s~edL~~V~GIg~~~~e~lk~yl~ 74 (98)
T d2axtu1 16 GEKIDLNNTNIAAFIQYRGLYPTLAKLIVKNA---PYESVEDVLNIPGLTERQKQILRENLE 74 (98)
T ss_dssp TTBEESSSSCGGGGTTSTTCTHHHHHHHHHSC---CCSSGGGGGGCTTCCTTHHHHHHHHGG
T ss_pred CCceecccccHHHHHHhhhhcHHHHHHHHHcC---CcCCHHHHhhCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999999999887 99999999999 999999999988664
No 14
>d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=98.28 E-value=1.2e-07 Score=89.17 Aligned_cols=65 Identities=26% Similarity=0.491 Sum_probs=49.7
Q ss_pred cccccCcccC-----HHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhh-c-CCCHHHHHHHhccccccccC
Q 005960 586 EYIDFLNTAS-----REELVELKGIGQRLADYICELRQSSPVKSLSDLEK-I-GLSTKQVYNLFGKAAKGIFD 651 (667)
Q Consensus 586 ~~~v~iNtA~-----~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~-v-Gi~~~~~~~l~~~~~~~~~~ 651 (667)
.+.-+.|.|. .+.|+.|||||+|+|+.||+.|+..||.|++||.+ + ||. +..+-|.+|+..++-+
T Consensus 99 ~FV~FfN~A~pit~klH~leLLPGIGkk~~~~iveeR~~~~f~sf~dl~~rv~~~~-~p~~lla~Ri~~Ei~d 170 (180)
T d2i5ha1 99 KYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEERKKRPFESFEDIAQRVKGIQ-RPEKLIVSRIIYEIKN 170 (180)
T ss_dssp HHHHHHC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHHSCCCSHHHHHHHSTTCC-CHHHHHHHHHHHHHHC
T ss_pred hheeeeecCCccchhhHHHHhcccccHHHHHHHHHHHccCCCCCHHHHHHHhcCCC-CHHHHHHHHHHHHhcC
Confidence 4566789777 99999999999999999999999999999999974 7 653 3334455555555544
No 15
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=97.55 E-value=1.1e-05 Score=64.16 Aligned_cols=57 Identities=19% Similarity=0.147 Sum_probs=47.0
Q ss_pred cCcccCHHHHhcCCCCCHHHHHHHHHHHhcC---CCCCHHHHhhc-CCCHHHHHHHhcccc
Q 005960 590 FLNTASREELVELKGIGQRLADYICELRQSS---PVKSLSDLEKI-GLSTKQVYNLFGKAA 646 (667)
Q Consensus 590 ~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~---pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 646 (667)
++|....-.|..|||||+++|++|+++.... --.+.+||.+| |||++..+.|++.+.
T Consensus 3 ~~~~~~~~~L~~I~gIG~~~a~~L~~~f~s~~~i~~As~eeL~~i~GIG~~~A~~I~~~~~ 63 (68)
T d1x2ia1 3 TLAERQRLIVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVIT 63 (68)
T ss_dssp CHHHHHHHHHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCcCHHHHHHHHHHcCCHHHHHHhHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 4455555678899999999999999998643 44589999999 999999999988764
No 16
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=97.38 E-value=1.4e-05 Score=61.16 Aligned_cols=48 Identities=17% Similarity=0.339 Sum_probs=39.2
Q ss_pred HHhcCCCCCHHHHHHHHHHHhcC-CC--CCHHHHhhc-CCCHHHHHHHhccc
Q 005960 598 ELVELKGIGQRLADYICELRQSS-PV--KSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 598 eL~~lpGIG~~~A~~Ii~~R~~~-pf--~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
.|..|||||+++|++++++-... .. .+.+||.+| |||++..++|.+.+
T Consensus 3 ~L~~I~gVG~~~a~~L~~~F~s~~~i~~As~eeL~~v~GIg~~~A~~I~~~l 54 (56)
T d1kfta_ 3 SLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSL 54 (56)
T ss_dssp GGGGCTTCSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHH
T ss_pred CcccCCCccHHHHHHHHHHhCCHHHHHHhhHHHHHhcCCCCHHHHHHHHHHH
Confidence 48899999999999999986533 33 278889999 99999999987653
No 17
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=97.30 E-value=6.2e-05 Score=60.00 Aligned_cols=55 Identities=24% Similarity=0.212 Sum_probs=44.4
Q ss_pred cccCHHHHhcCCCCCHHHHHHHHHHHhcC---CCCCHHHHhhc-CCCHHHHHHHhcccc
Q 005960 592 NTASREELVELKGIGQRLADYICELRQSS---PVKSLSDLEKI-GLSTKQVYNLFGKAA 646 (667)
Q Consensus 592 NtA~~~eL~~lpGIG~~~A~~Ii~~R~~~---pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 646 (667)
+....--|..|||||+++|++|+++-... --.+.+||.+| |||++.++.|.+.+.
T Consensus 8 ~~~~~~~L~~IpgIG~~~a~~L~~~F~s~~~l~~As~eeL~~v~GIG~~~A~~I~~~~~ 66 (70)
T d2bgwa1 8 REWQLYILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGIGEKRAEEIKKILM 66 (70)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHHSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHhCCHHHHHHcCHHHHHcCCCCCHHHHHHHHHHHh
Confidence 33344457899999999999999987533 34579999999 999999999987653
No 18
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=97.04 E-value=0.00018 Score=55.53 Aligned_cols=46 Identities=24% Similarity=0.404 Sum_probs=35.7
Q ss_pred HhcCCCCCHHHHHHHHHHHh----cCCCCCHHHHhhc-CCCHHHHHHHhcc
Q 005960 599 LVELKGIGQRLADYICELRQ----SSPVKSLSDLEKI-GLSTKQVYNLFGK 644 (667)
Q Consensus 599 L~~lpGIG~~~A~~Ii~~R~----~~pf~~~~dL~~v-Gi~~~~~~~l~~~ 644 (667)
|..|||||+++|+++.++-= ..-..++++|.+| ||+++..++|...
T Consensus 1 L~~IpGIG~~~a~~L~~~G~~tv~~l~~a~~eeL~~i~Gi~~~~A~~i~~~ 51 (60)
T d2i1qa1 1 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMG 51 (60)
T ss_dssp CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHccCCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHH
Confidence 67899999999999998731 1134566778889 9999999998654
No 19
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=96.75 E-value=0.00033 Score=54.24 Aligned_cols=48 Identities=23% Similarity=0.390 Sum_probs=37.1
Q ss_pred HHhcCCCCCHHHHHHHHHHHhc---C-CCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 598 ELVELKGIGQRLADYICELRQS---S-PVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 598 eL~~lpGIG~~~A~~Ii~~R~~---~-pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
.|+.|||||+++|++++++-=. . -..+++||.+| |||.+..++|....
T Consensus 2 ~L~~i~GIG~~~a~~L~~~g~~sv~~l~~a~~~eL~~i~Gi~~~~A~~i~~~a 54 (61)
T d1pzna1 2 SIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAA 54 (61)
T ss_dssp CSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHhcCCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHH
Confidence 4788999999999999986411 1 34566777789 99999999986543
No 20
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]}
Probab=96.22 E-value=0.0035 Score=49.74 Aligned_cols=49 Identities=18% Similarity=0.326 Sum_probs=38.3
Q ss_pred HHHhcCCCCCHHHHHHHHHHH------hcCCCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 597 EELVELKGIGQRLADYICELR------QSSPVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 597 ~eL~~lpGIG~~~A~~Ii~~R------~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
+.|..++||||++|-+|+..- +..--.+..-|.+| |||+|+.++|.-.+
T Consensus 9 ~~Li~V~GIGpK~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~eL 64 (71)
T d1bvsa2 9 LALLSVSGVGPRLAMATLAVHDAAALRQALADSDVASLTRVPGIGRRGAERIVLEL 64 (71)
T ss_dssp HHHHTSSSCCHHHHHHHHHHSCHHHHHHHTTTTCHHHHHTSTTCCHHHHHHHHHHS
T ss_pred HHHhccCCcCHHHHHHHHHhCCHHHHHHHHHcCCHHHhhcCCCCCHHHHHHHHHHH
Confidence 578899999999999999652 22255677788999 99999998875433
No 21
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.92 E-value=0.0022 Score=49.52 Aligned_cols=50 Identities=14% Similarity=0.254 Sum_probs=36.2
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcC---CCCCHHHHhhc-CCCHHHHHHHhcccc
Q 005960 596 REELVELKGIGQRLADYICELRQSS---PVKSLSDLEKI-GLSTKQVYNLFGKAA 646 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~~~---pf~~~~dL~~v-Gi~~~~~~~l~~~~~ 646 (667)
++-|..|||||++.+++++++=... -=.+++||.+| | |++..++|.+.+-
T Consensus 2 ~d~L~~iPGIg~~~~~~Ll~~f~Si~~l~~As~~eL~~v~G-~~~~A~~i~~f~~ 55 (62)
T d2a1ja1 2 QDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIH 55 (62)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred chHHhcCCCCCHHHHHHHHHHhccHHHHHhCCHHHHHHCcC-cHHHHHHHHHHHh
Confidence 4668999999999999998531110 22455677788 9 8888888877653
No 22
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]}
Probab=95.60 E-value=0.0051 Score=49.66 Aligned_cols=49 Identities=24% Similarity=0.348 Sum_probs=37.7
Q ss_pred HHHhcCCCCCHHHHHHHHHHH------hcCCCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 597 EELVELKGIGQRLADYICELR------QSSPVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 597 ~eL~~lpGIG~~~A~~Ii~~R------~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
+.|..++||||++|-+|+..- +..--.+..-|.+| |||+|+.++|.--+
T Consensus 9 ~~Li~V~GIGpK~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~eL 64 (78)
T d1cuka2 9 KELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEM 64 (78)
T ss_dssp HHHHHSSSCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHccCCccHHHHHHHHHhCCHHHHHHHHHccCHHHhhcCCCCCHHHHHHHHHHH
Confidence 578899999999999999652 11134677778899 99999988875443
No 23
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]}
Probab=95.54 E-value=0.0059 Score=48.68 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=37.1
Q ss_pred HHHhcCCCCCHHHHHHHHHHH------hcCCCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 597 EELVELKGIGQRLADYICELR------QSSPVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 597 ~eL~~lpGIG~~~A~~Ii~~R------~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
+.|..++||||++|-+|+..- +..--.+.+-|.+| |||+|+.++|.-.+
T Consensus 10 ~~Li~V~GIGpk~Al~iLs~~~~~~l~~aI~~~D~~~L~~vpGIG~KtA~rIi~eL 65 (73)
T d1ixra1 10 ELLLSVSGVGPKVALALLSALPPRLLARALLEGDARLLTSASGVGRRLAERIALEL 65 (73)
T ss_dssp HHHHSSSCCCHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHhccCCcCHHHHHHHHHHccHHHHHHHHHhcCHHHhhcCCCCCHHHHHHHHHHH
Confidence 578889999999999999642 11134677788889 99999988875443
No 24
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=95.33 E-value=0.0037 Score=47.25 Aligned_cols=29 Identities=38% Similarity=0.402 Sum_probs=26.0
Q ss_pred cccCcccCHHHHhcCCCCCHHHHHHHHHH
Q 005960 588 IDFLNTASREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 588 ~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
.-+|-.|+.+||..+||||+++|+.|.++
T Consensus 25 ~~~i~~As~eeL~~v~GIg~~~A~~I~~~ 53 (56)
T d1kfta_ 25 LQGLRNASVEEIAKVPGISQGLAEKIFWS 53 (56)
T ss_dssp HHHHHHCCHHHHTTSSSTTSHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhcCCCCHHHHHHHHHH
Confidence 35667899999999999999999999886
No 25
>d3ci0k1 a.60.16.1 (K:204-274) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=95.15 E-value=0.0036 Score=49.61 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=44.0
Q ss_pred cccCcccCHHHH---hcC--CCCCHHHHHHHHHHHhcCCCCCHHHHhh---c-CCCHHHHHHHhccccc
Q 005960 588 IDFLNTASREEL---VEL--KGIGQRLADYICELRQSSPVKSLSDLEK---I-GLSTKQVYNLFGKAAK 647 (667)
Q Consensus 588 ~v~iNtA~~~eL---~~l--pGIG~~~A~~Ii~~R~~~pf~~~~dL~~---v-Gi~~~~~~~l~~~~~~ 647 (667)
+|||||.+.++- ..| .+|+..-|++||+.|-..+|.+++||.. + |+....-++++..+.+
T Consensus 2 ~iNINTL~~~qa~LL~Alf~~~ls~~~A~~li~~RP~~Gw~sv~~F~~~~~l~~~~~~~~~~~k~~l~v 70 (71)
T d3ci0k1 2 QININTLDVTQSVILEALFDPWLSPVQARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQLKTVLSV 70 (71)
T ss_dssp CEETTTCCGGGTHHHHHHTC-------CCHHHHTCCTTCCSCHHHHHTSGGGSSSCHHHHHHHHHHEES
T ss_pred ccccccCCcchHHHHHHHhcCCCCHHHHHHHHHhCCcchhhhHHHHHhChhhcccCHHHHHHhhhhccc
Confidence 689999999884 333 4599999999999998889999999964 5 9998888888877654
No 26
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.87 E-value=0.0076 Score=48.44 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=37.9
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhcC-CC--CCHHHHhhc-CCCHHHHHHHhccc
Q 005960 597 EELVELKGIGQRLADYICELRQSS-PV--KSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 597 ~eL~~lpGIG~~~A~~Ii~~R~~~-pf--~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
..|..|||||++.|++++++=... .+ .+.+||..| |||++..++|.+.+
T Consensus 19 ~~L~~I~gIg~~~a~~L~~~F~s~~~i~~A~~eeL~~i~GiG~~~A~~i~~~f 71 (78)
T d2a1jb1 19 ECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVL 71 (78)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred HHhcCCCCcCHHHHHHHHHHhCCcHHHHhhhHHHHHHhhhhhHHHHHHHHHHH
Confidence 568899999999999998752211 11 457788889 99999999988765
No 27
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]}
Probab=94.48 E-value=0.011 Score=46.84 Aligned_cols=28 Identities=29% Similarity=0.340 Sum_probs=24.6
Q ss_pred ccCcccCHHHHhcCCCCCHHHHHHHHHH
Q 005960 589 DFLNTASREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
--|...+.+.|..+||||+|+|++||-.
T Consensus 36 ~aI~~~D~~~L~~vpGIG~KtA~rIi~e 63 (71)
T d1bvsa2 36 QALADSDVASLTRVPGIGRRGAERIVLE 63 (71)
T ss_dssp HHTTTTCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHcCCHHHhhcCCCCCHHHHHHHHHH
Confidence 3477889999999999999999999854
No 28
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.11 E-value=0.013 Score=44.40 Aligned_cols=39 Identities=33% Similarity=0.424 Sum_probs=31.4
Q ss_pred CHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhc--CCCHHH
Q 005960 595 SREELVELKGIGQRLADYICELRQSSPVKSLSDLEKI--GLSTKQ 637 (667)
Q Consensus 595 ~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~v--Gi~~~~ 637 (667)
+.+.|..|.||||+.|++.++ + ++++++||.+- .+..++
T Consensus 5 ~l~~l~~I~GvGp~~A~~l~~-~---Gi~ti~dLr~~~~~Lt~~Q 45 (57)
T d2fmpa2 5 SINFLTRVSGIGPSAARKFVD-E---GIKTLEDLRKNEDKLNHHQ 45 (57)
T ss_dssp HHHHHTTSTTCCHHHHHHHHH-T---TCCSHHHHHTCGGGSCHHH
T ss_pred HHHHHhccccccHHHHHHHHH-h---CCCCHHHHHhhhhhCCHHH
Confidence 457899999999999999975 3 89999999763 355554
No 29
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=93.91 E-value=0.011 Score=46.19 Aligned_cols=30 Identities=33% Similarity=0.478 Sum_probs=27.0
Q ss_pred ccCcccCHHHHhcCCCCCHHHHHHHHHHHh
Q 005960 589 DFLNTASREELVELKGIGQRLADYICELRQ 618 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~ 618 (667)
-+|-.|+.++|..++|||+++|+.|.++-.
T Consensus 34 ~~i~~As~eeL~~i~GIG~~~A~~I~~~~~ 63 (68)
T d1x2ia1 34 ERVFTASVAELMKVEGIGEKIAKEIRRVIT 63 (68)
T ss_dssp HHHHHCCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 567789999999999999999999988763
No 30
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=93.75 E-value=0.019 Score=45.02 Aligned_cols=29 Identities=31% Similarity=0.491 Sum_probs=26.2
Q ss_pred ccCcccCHHHHhcCCCCCHHHHHHHHHHH
Q 005960 589 DFLNTASREELVELKGIGQRLADYICELR 617 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R 617 (667)
-.|-.|+.++|..++|||+++|+.|.++=
T Consensus 37 ~~l~~As~eeL~~v~GIG~~~A~~I~~~~ 65 (70)
T d2bgwa1 37 ERFFTASKAEISKVEGIGEKRAEEIKKIL 65 (70)
T ss_dssp HHHTTCCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHcCHHHHHcCCCCCHHHHHHHHHHH
Confidence 45568999999999999999999999986
No 31
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=93.66 E-value=0.028 Score=42.96 Aligned_cols=38 Identities=16% Similarity=0.261 Sum_probs=30.7
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhc---CCCHHH
Q 005960 596 REELVELKGIGQRLADYICELRQSSPVKSLSDLEKI---GLSTKQ 637 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~v---Gi~~~~ 637 (667)
..+|..|.||||+.|++.++. +|++++||.+- -+..++
T Consensus 7 l~~f~~I~GvGp~~A~~l~~~----Gi~ti~dL~~~~~~~Lt~~Q 47 (60)
T d1jmsa3 7 FKLFTSVFGVGLKTAEKWFRM----GFRTLSKIQSDKSLRFTQMQ 47 (60)
T ss_dssp HHHHHTSTTCCHHHHHHHHHT----TCCSHHHHHHCSSCCCCHHH
T ss_pred HHHHhccccccHHHHHHHHHh----CCCCHHHHHhcCcccCCHHH
Confidence 468899999999999998743 89999999864 255554
No 32
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=93.42 E-value=0.03 Score=42.58 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=24.7
Q ss_pred ccCcccCHHHHhcCCCCCHHHHHHHHHH
Q 005960 589 DFLNTASREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
-.|=.|+.++|..+||||+++|++|++.
T Consensus 24 ~~l~~a~~eeL~~i~Gi~~~~A~~i~~~ 51 (60)
T d2i1qa1 24 MKIATATVGELTDIEGISEKAAAKMIMG 51 (60)
T ss_dssp HHHHTCCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHCCCCCHHHHHHHHHH
Confidence 3445799999999999999999999876
No 33
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=92.55 E-value=0.021 Score=54.03 Aligned_cols=49 Identities=29% Similarity=0.450 Sum_probs=33.6
Q ss_pred eeeeceeeCCCCCchhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcceec
Q 005960 81 CYQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 81 ~F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
.|+||..|-.+. + +..|. .++.+++.--.++|. ++-||++|+||||-+.
T Consensus 6 ~~tFdnF~vg~~-N-~~a~~-~~~~~~~~~~~~~n~-l~l~G~~G~GKTHLl~ 54 (213)
T d1l8qa2 6 KYTLENFIVGEG-N-RLAYE-VVKEALENLGSLYNP-IFIYGSVGTGKTHLLQ 54 (213)
T ss_dssp TCCSSSCCCCTT-T-HHHHH-HHHHHHHTTTTSCSS-EEEECSSSSSHHHHHH
T ss_pred CCChhhccCCCc-H-HHHHH-HHHHHHhCcCCCCCc-EEEECCCCCcHHHHHH
Confidence 489998875432 3 44443 455666654455554 7899999999999764
No 34
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]}
Probab=92.48 E-value=0.038 Score=43.78 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=24.2
Q ss_pred cCcccCHHHHhcCCCCCHHHHHHHHHHHh
Q 005960 590 FLNTASREELVELKGIGQRLADYICELRQ 618 (667)
Q Consensus 590 ~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~ 618 (667)
-|-..+.+.|..+||||+|+|++||-.=+
T Consensus 38 aI~~~D~~~L~~vpGIG~KtA~rIi~eLk 66 (73)
T d1ixra1 38 ALLEGDARLLTSASGVGRRLAERIALELK 66 (73)
T ss_dssp HHHTTCHHHHTTSTTCCHHHHHHHHHHHT
T ss_pred HHHhcCHHHhhcCCCCCHHHHHHHHHHHH
Confidence 35577889999999999999999986543
No 35
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]}
Probab=92.38 E-value=0.033 Score=44.71 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.4
Q ss_pred CcccCHHHHhcCCCCCHHHHHHHHHH
Q 005960 591 LNTASREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 591 iNtA~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
|-.-+.+.|..+||||+|+|++||-.
T Consensus 38 I~~~D~~~L~~vpGIG~KtA~rIi~e 63 (78)
T d1cuka2 38 VEREEVGALVKLPGIGKKTAERLIVE 63 (78)
T ss_dssp HHTTCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHccCHHHhhcCCCCCHHHHHHHHHH
Confidence 45677889999999999999999854
No 36
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.35 E-value=0.1 Score=39.21 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=31.8
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHH
Q 005960 596 REELVELKGIGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVY 639 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~ 639 (667)
...+..|.||||+.|++.++. ++++++||.+- .+...+.-
T Consensus 7 l~~ft~I~GvGp~~A~~l~~~----Gi~ti~dLr~~~~Ln~~Q~i 47 (57)
T d2bcqa2 7 LELFSNIWGAGTKTAQMWYQQ----GFRSLEDIRSQASLTTQQAI 47 (57)
T ss_dssp HHHHHTSTTCCHHHHHHHHHT----TCCSHHHHHHHCCCCHHHHH
T ss_pred HHHHhccccccHHHHHHHHHh----CCCCHHHHHhcCCCCHHHHH
Confidence 356789999999999998753 89999999874 66655543
No 37
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.18 E-value=0.041 Score=44.45 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=31.4
Q ss_pred cCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhh
Q 005960 594 ASREELVELKGIGQRLADYICELRQSSPVKSLSDLEK 630 (667)
Q Consensus 594 A~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~ 630 (667)
.+.++|..|||||+.+|++|-++=+...+.-+++|++
T Consensus 45 ~~~~~l~~i~GIGk~ia~kI~E~~~TG~~~~le~l~~ 81 (82)
T d2fmpa1 45 KSGAEAKKLPGVGTKIAEKIDEFLATGKLRKLEKIRQ 81 (82)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCHHHHhcCCCccHHHHHHHHHHHHhCChHHHHHHhc
Confidence 3678999999999999999999887777777777753
No 38
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=91.50 E-value=0.039 Score=42.00 Aligned_cols=28 Identities=32% Similarity=0.298 Sum_probs=24.8
Q ss_pred ccCcccCHHHHhcCCCCCHHHHHHHHHH
Q 005960 589 DFLNTASREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
-+|=.|+.++|..+||||+++|++|++.
T Consensus 26 ~~l~~a~~~eL~~i~Gi~~~~A~~i~~~ 53 (61)
T d1pzna1 26 EAIAVASPIELKEVAGISEGTALKIIQA 53 (61)
T ss_dssp HHHHTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHCCCCCHHHHHHHHHH
Confidence 4455899999999999999999999875
No 39
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.37 E-value=0.047 Score=43.55 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=24.2
Q ss_pred CcccCHHHHhcCCCCCHHHHHHHHHHH
Q 005960 591 LNTASREELVELKGIGQRLADYICELR 617 (667)
Q Consensus 591 iNtA~~~eL~~lpGIG~~~A~~Ii~~R 617 (667)
|=.|+.++|..+||||+++|+.|.++=
T Consensus 45 i~~A~~eeL~~i~GiG~~~A~~i~~~f 71 (78)
T d2a1jb1 45 LIAASREDLALCPGLGPQKARRLFDVL 71 (78)
T ss_dssp HHSCCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred HHhhhHHHHHHhhhhhHHHHHHHHHHH
Confidence 336999999999999999999999875
No 40
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=90.88 E-value=0.053 Score=45.00 Aligned_cols=42 Identities=7% Similarity=0.058 Sum_probs=32.8
Q ss_pred cccccCcccCHHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHh
Q 005960 586 EYIDFLNTASREELVELKGIGQRLADYICELRQSSPVKSLSDLE 629 (667)
Q Consensus 586 ~~~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~ 629 (667)
..+..|. +.++|..|||||+++|++|-++=+...+..+|+|.
T Consensus 53 ~l~~~i~--~~~~l~~i~GIGk~i~~kI~Eil~tG~~~~lE~l~ 94 (95)
T d1jmsa1 53 SLPFPIT--SMKDTEGIPCLGDKVKSIIEGIIEDGESSEAKAVL 94 (95)
T ss_dssp TCSSCCC--SGGGGTTCSSCCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred hCCcccC--CHHHHHhccchhHHHHHHHHHHHHHCCcHHHHHhh
Confidence 3344443 55789999999999999999998877887777775
No 41
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.04 E-value=0.1 Score=41.29 Aligned_cols=35 Identities=29% Similarity=0.480 Sum_probs=26.2
Q ss_pred cccccCcccCHHHHhcCCCCCHHHHHHHHHHHhcCCC
Q 005960 586 EYIDFLNTASREELVELKGIGQRLADYICELRQSSPV 622 (667)
Q Consensus 586 ~~~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~pf 622 (667)
..+.+|. +.++|..|||||+++|++|.++-+..-+
T Consensus 37 ~l~~~i~--~~~~l~~lpGiG~~i~~kI~Eil~tG~l 71 (76)
T d2bcqa1 37 SFHKPVT--SYQEACSIPGIGKRMAEKIIEILESGHL 71 (76)
T ss_dssp SCCSCCC--CHHHHHTSTTCCHHHHHHHHHHHHSSSC
T ss_pred hCCcccC--CHHHHhcCCCccHHHHHHHHHHHHhCcc
Confidence 3344443 4678999999999999999998765433
No 42
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}
Probab=89.59 E-value=0.051 Score=50.37 Aligned_cols=45 Identities=31% Similarity=0.339 Sum_probs=31.6
Q ss_pred ccCcccCHHHHhcCCCCCHHHHHHHHHHHhcC-CCCCHHHHhhcCC
Q 005960 589 DFLNTASREELVELKGIGQRLADYICELRQSS-PVKSLSDLEKIGL 633 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~-pf~~~~dL~~vGi 633 (667)
-+|-.|+.++|..|+|||+++|+.|+++=... --.-+++|.+.||
T Consensus 131 ~~l~~as~eeL~~I~GIG~~~A~si~~ff~~~~n~~~i~~L~~~Gv 176 (181)
T d1dgsa1 131 DRLLEASLEELIEVEEVGELTARAILETLKDPAFRDLVRRLKEAGV 176 (181)
T ss_dssp HHHTTCCHHHHHTSTTCCHHHHHHHHHHHHCHHHHHHHHHHHHTTC
T ss_pred hhhhhhHHHHHhhcCCcCHHHHHHHHHHHCCHHHHHHHHHHHHcCC
Confidence 34567899999999999999999999974321 2233444544454
No 43
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=88.88 E-value=0.1 Score=40.05 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=23.6
Q ss_pred CcccCHHHHhcCCCCCHHHHHHHHHHH
Q 005960 591 LNTASREELVELKGIGQRLADYICELR 617 (667)
Q Consensus 591 iNtA~~~eL~~lpGIG~~~A~~Ii~~R 617 (667)
|=.++.++|..++|||+++|++|++.=
T Consensus 30 ia~~t~~~L~~i~Gi~e~~a~KIi~~A 56 (64)
T d1szpa1 30 VAYAPRKDLLEIKGISEAKADKLLNEA 56 (64)
T ss_dssp HHHSCSHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHcCCCCHHHHHHHHHHH
Confidence 336899999999999999999999864
No 44
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=88.02 E-value=0.1 Score=40.18 Aligned_cols=45 Identities=27% Similarity=0.335 Sum_probs=34.3
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcCCCCCH--------HHHhhc-CCCHHHHHHHhccc
Q 005960 596 REELVELKGIGQRLADYICELRQSSPVKSL--------SDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~--------~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
.++|+ ++|||+..++++.+. +|.++ +||.++ ||+.+..++|...+
T Consensus 3 i~~L~-~~Gig~~~~~kL~~a----G~~Tve~ia~~t~~~L~~i~Gi~e~~a~KIi~~A 56 (64)
T d1szpa1 3 IEKLQ-VNGITMADVKKLRES----GLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEA 56 (64)
T ss_dssp GGGGC-CTTCCHHHHHHHHTT----SCCSHHHHHHSCSHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHh-HCCCCHHHHHHHHHc----CCCcHHHHHhCCHHHHHHcCCCCHHHHHHHHHHH
Confidence 34554 699999999986554 67665 566778 99999999987654
No 45
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}
Probab=87.78 E-value=0.13 Score=48.70 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.5
Q ss_pred cCHHHHhcCCCCCHHHHHHHHHHHh
Q 005960 594 ASREELVELKGIGQRLADYICELRQ 618 (667)
Q Consensus 594 A~~~eL~~lpGIG~~~A~~Ii~~R~ 618 (667)
.+.++|.+|||||+++|..|+.+--
T Consensus 110 ~~~~~L~~LpGVG~kTA~~il~~~~ 134 (217)
T d1keaa_ 110 RNRKAILDLPGVGKYTCAAVMCLAF 134 (217)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred hhhHHHHHHHhhhhhhhHHHHHHhc
Confidence 3589999999999999999999863
No 46
>d1wg8a1 a.60.13.1 (A:109-206) Putative methyltransferase TM0872, insert domain {Thermus thermophilus [TaxId: 274]}
Probab=86.21 E-value=0.15 Score=42.48 Aligned_cols=43 Identities=26% Similarity=0.441 Sum_probs=36.3
Q ss_pred ccCcccCHHHHhcC-C-----CCCHHHHHHHHHHHhcCCCCCHHHHhhc
Q 005960 589 DFLNTASREELVEL-K-----GIGQRLADYICELRQSSPVKSLSDLEKI 631 (667)
Q Consensus 589 v~iNtA~~~eL~~l-p-----GIG~~~A~~Ii~~R~~~pf~~~~dL~~v 631 (667)
..||+.+.++|..| . --..++|++||++|+..||.+-.||.++
T Consensus 24 ~iln~~~~~eL~~if~~yGee~~a~~iA~~Iv~~R~~~~i~tT~dL~~i 72 (98)
T d1wg8a1 24 EVVNRLPLEALARLLRELGEEPQAYRIARAIVAAREKAPIETTTQLAEI 72 (98)
T ss_dssp HHHHHSCHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHSCCCBHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 46899999999876 2 2347999999999999999999999764
No 47
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=86.19 E-value=0.18 Score=47.51 Aligned_cols=27 Identities=26% Similarity=0.557 Sum_probs=22.7
Q ss_pred cCHHHHhcCCCCCHHHHHHHHHHHhcC
Q 005960 594 ASREELVELKGIGQRLADYICELRQSS 620 (667)
Q Consensus 594 A~~~eL~~lpGIG~~~A~~Ii~~R~~~ 620 (667)
.+.++|..|||||+++|..|+.+=-..
T Consensus 107 ~~~~~L~~LpGVG~kTA~~il~~a~~~ 133 (214)
T d1orna_ 107 RDRDELMKLPGVGRKTANVVVSVAFGV 133 (214)
T ss_dssp SCHHHHTTSTTCCHHHHHHHHHHHHCC
T ss_pred CCHHHHHhCcCcccchHHHHHHHHhcC
Confidence 358999999999999999999875333
No 48
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=85.77 E-value=0.22 Score=46.80 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=28.9
Q ss_pred hhhhhcCCCCE-----EEEeeccCCCCCcceeccCCCCCCChHHHHHHHHhhhccCCceEEEEE
Q 005960 106 LIPGIFHGRNA-----TVFAYGATGSGKTYTMQGSEERPGLMPLAMSKILSICQSTGSTAEISY 164 (667)
Q Consensus 106 lV~~vl~G~N~-----tIfaYGqTGSGKTyTm~G~~~~~GLipral~~LF~~~~~~~~~v~vS~ 164 (667)
+...+++|... .++.||++|+|||+++- .+++.|............+.|
T Consensus 32 l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~----------~l~~~l~~~~~~~~~~~~~~~ 85 (287)
T d1w5sa2 32 YLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK----------FTVKRVSEAAAKEGLTVKQAY 85 (287)
T ss_dssp HHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHH----------HHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHcCCCCCCcceEEEeECCCCCCHHHHHH----------HHHHHHHhhcccccCCceeee
Confidence 33445555432 46789999999999863 455566554443333333333
No 49
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]}
Probab=85.43 E-value=0.2 Score=47.45 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=23.7
Q ss_pred ccCHHHHhcCCCCCHHHHHHHHHHHhcCC
Q 005960 593 TASREELVELKGIGQRLADYICELRQSSP 621 (667)
Q Consensus 593 tA~~~eL~~lpGIG~~~A~~Ii~~R~~~p 621 (667)
-.+.++|..|||||+++|..|+.+=-..|
T Consensus 105 p~~~~~L~~LpGVG~kTA~~il~~a~~~~ 133 (224)
T d1kg2a_ 105 PETFEEVAALPGVGRSTAGAILSLSLGKH 133 (224)
T ss_dssp CCSHHHHHTSTTCCHHHHHHHHHHHHCCS
T ss_pred chHHHHHHHHHhhhhhhhHHHHHHhhhcc
Confidence 34679999999999999999998764443
No 50
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}
Probab=85.43 E-value=0.21 Score=47.24 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=23.7
Q ss_pred ccCHHHHhcCCCCCHHHHHHHHHHHhcC
Q 005960 593 TASREELVELKGIGQRLADYICELRQSS 620 (667)
Q Consensus 593 tA~~~eL~~lpGIG~~~A~~Ii~~R~~~ 620 (667)
-.+.++|..|||||+++|..|+.+=-.+
T Consensus 103 p~~~~~Ll~LpGIG~kTA~~il~~a~~~ 130 (221)
T d1rrqa1 103 PDDPDEFSRLKGVGPYTVGAVLSLAYGV 130 (221)
T ss_dssp CCSHHHHHTSTTCCHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 4568999999999999999999886333
No 51
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}
Probab=84.64 E-value=0.23 Score=46.69 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=24.2
Q ss_pred cCHHHHhcCCCCCHHHHHHHHHHHhcCC
Q 005960 594 ASREELVELKGIGQRLADYICELRQSSP 621 (667)
Q Consensus 594 A~~~eL~~lpGIG~~~A~~Ii~~R~~~p 621 (667)
.+.++|..|||||+++|..|+.+--..|
T Consensus 106 ~~~~~L~~LpGVG~~TA~~Il~~a~~~p 133 (211)
T d2abka_ 106 EDRAALEALPGVGRKTANVVLNTAFGWP 133 (211)
T ss_dssp SCHHHHHHSTTCCHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHhcCc
Confidence 4579999999999999999999875553
No 52
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=83.81 E-value=0.22 Score=38.82 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=24.8
Q ss_pred ccCcccCHHHHhcCCCCCHHHHHHHHHHH
Q 005960 589 DFLNTASREELVELKGIGQRLADYICELR 617 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R 617 (667)
-.|=.|+.++|..++|||+++|++|++.=
T Consensus 35 ~~i~~at~~~L~~i~G~~e~~A~KIi~~a 63 (70)
T d1b22a_ 35 EAVAYAPKKELINIKGISEAKADKILAEA 63 (70)
T ss_dssp GGBTSSBHHHHHTTTTCSTTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHcCCCCHHHHHHHHHHH
Confidence 34457899999999999999999999864
No 53
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=83.61 E-value=0.16 Score=49.24 Aligned_cols=50 Identities=26% Similarity=0.322 Sum_probs=34.3
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhh-hhcC--C--CCEEEEeeccCCCCCccee
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIP-GIFH--G--RNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~-~vl~--G--~N~tIfaYGqTGSGKTyTm 132 (667)
++||.|.+.+. ..+++.+.+..++.. ..+. | +...|+-||+.|+|||+..
T Consensus 4 ~~f~di~G~~~-~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~ 58 (265)
T d1r7ra3 4 VTWEDIGGLED-VKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 58 (265)
T ss_dssp CSCSSCSSSSC-CCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHH
T ss_pred CCHHHhcCHHH-HHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHH
Confidence 78999988875 435676665555542 1222 2 3457999999999999864
No 54
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=82.93 E-value=0.17 Score=47.62 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=14.2
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.|+.||++|+|||+..
T Consensus 34 ~ilL~GpPGtGKT~la 49 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLR 49 (273)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999964
No 55
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=82.85 E-value=0.23 Score=46.37 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=25.9
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhh
Q 005960 596 REELVELKGIGQRLADYICELRQSSPVKSLSDLEK 630 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~ 630 (667)
.-+|..|||||+++|.++.+ .+|++++||.+
T Consensus 143 ll~L~~i~gvgr~rAr~L~~----~Gi~t~~dl~~ 173 (198)
T d2p6ra2 143 LLELVRIRHIGRVRARKLYN----AGIRNAEDIVR 173 (198)
T ss_dssp GHHHHTSTTCCHHHHHHHHT----TTCCSHHHHHH
T ss_pred HHhHhcCCCCCHHHHHHHHH----cCCCCHHHHHH
Confidence 34789999999999998864 39999999854
No 56
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}
Probab=82.57 E-value=0.48 Score=43.45 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=34.5
Q ss_pred cCCCCCHHHHHHHHHHHhc--C-CCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 601 ELKGIGQRLADYICELRQS--S-PVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 601 ~lpGIG~~~A~~Ii~~R~~--~-pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
.|||||++.|+.+.++=.. . -=.+++||..| |||++..+.|.+..
T Consensus 111 GI~~vG~~~Ak~La~~f~sl~~l~~as~eeL~~I~GIG~~~A~si~~ff 159 (181)
T d1dgsa1 111 GLPGVGEVLARNLARRFGTMDRLLEASLEELIEVEEVGELTARAILETL 159 (181)
T ss_dssp TCSSCCHHHHHHHHHTTSBHHHHTTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHHHhhcCCcCHHHHHHHHHHH
Confidence 4799999999988875211 1 33567889999 99999999887654
No 57
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}
Probab=80.07 E-value=0.19 Score=48.71 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=28.6
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhhhh-----c----CCCCEEEEeeccCCCCCccee
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGI-----F----HGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~v-----l----~G~N~tIfaYGqTGSGKTyTm 132 (667)
.+||-|++.++ .-+++ ..+|..+ + ....-.|+-||+.|+|||+..
T Consensus 9 ~t~~Di~Gl~~-~k~~l-----~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la 62 (256)
T d1lv7a_ 9 TTFADVAGCDE-AKEEV-----AELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (256)
T ss_dssp CCGGGSCSCHH-HHHHT-----HHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCHHHHhchHH-HHHHH-----HHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHH
Confidence 68899998753 21222 2333221 1 233567999999999999975
No 58
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]}
Probab=79.62 E-value=0.44 Score=44.45 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=31.8
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHHhccccccccCCC
Q 005960 597 EELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFGKAAKGIFDRP 653 (667)
Q Consensus 597 ~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~~~~~~~~~~~~ 653 (667)
++|..|||||+|.|+||.-+=-+.+=..+.+|.+. | ....+++..--.++.|.+.
T Consensus 12 ~~l~kLPGIG~KsA~Rla~~LL~~~~~~~~~l~~~-l-~~~~~~I~~C~~C~~l~e~ 66 (199)
T d1vdda_ 12 RELSRLPGIGPKSAQRLAFHLFEQPREDIERLASA-L-LEAKRDLHVCPICFNITDA 66 (199)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHSSSCHHHHHHHHHH-H-HHHHHHCEECSSSCCEESS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHcCCHHHHHHHHHH-H-HHHHHhhCCCCCCCccccC
Confidence 57899999999999999988733332223333221 1 1222334444445666553
No 59
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.64 E-value=0.43 Score=35.97 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=24.6
Q ss_pred ccCcccCHHHHhcCCCCCHHHHHHHHHHH
Q 005960 589 DFLNTASREELVELKGIGQRLADYICELR 617 (667)
Q Consensus 589 v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R 617 (667)
-.|=.||.+||..++| |++.|+.|-++=
T Consensus 27 ~~l~~As~~eL~~v~G-~~~~A~~i~~f~ 54 (62)
T d2a1ja1 27 AELAALSQDELTSILG-NAANAKQLYDFI 54 (62)
T ss_dssp HHHHTCCHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHCcC-cHHHHHHHHHHH
Confidence 4566899999999999 999999998764
No 60
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}
Probab=77.44 E-value=0.28 Score=50.44 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=24.8
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCcceec
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
.+..++..-++.|+.-|+||||||.||.
T Consensus 149 ~l~~l~~~~~GliLvtGpTGSGKSTTl~ 176 (401)
T d1p9ra_ 149 NFRRLIKRPHGIILVTGPTGSGKSTTLY 176 (401)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHhhhhceEEEEcCCCCCccHHHH
Confidence 4567788889999999999999999986
No 61
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.95 E-value=0.85 Score=35.34 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=34.7
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHh----cCCCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 596 REELVELKGIGQRLADYICELRQ----SSPVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~----~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
.+.|. .+|||+..++++.+.== ..-+.+.+||.+| ||+.+..++|...+
T Consensus 10 i~~L~-~~Gig~~~i~kL~~aG~~Tv~~i~~at~~~L~~i~G~~e~~A~KIi~~a 63 (70)
T d1b22a_ 10 ISRLE-QCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEA 63 (70)
T ss_dssp HHHHH-HTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHH
T ss_pred HHHHh-hCCCCHHHHHHHHHcCcchHHHHHhCCHHHHHHcCCCCHHHHHHHHHHH
Confidence 44553 48999999998766410 1134556788899 99999999987643
No 62
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=76.13 E-value=0.33 Score=45.17 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=15.8
Q ss_pred CCEEEEeeccCCCCCccee
Q 005960 114 RNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 114 ~N~tIfaYGqTGSGKTyTm 132 (667)
....++-||++|+|||+++
T Consensus 42 ~~~~lll~GppGtGKT~l~ 60 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTL 60 (276)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCceEEECCCCCCHHHHH
Confidence 3457899999999999864
No 63
>d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}
Probab=74.43 E-value=1.1 Score=37.27 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=28.0
Q ss_pred HhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhh-c-CCCH-HHHHHH
Q 005960 599 LVELKGIGQRLADYICELRQSSPVKSLSDLEK-I-GLST-KQVYNL 641 (667)
Q Consensus 599 L~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~-v-Gi~~-~~~~~l 641 (667)
+-.+||||+|+|.++|.. |.+++++.+ + .++. +..++|
T Consensus 21 ipGV~GiG~KtA~kli~~-----~gsle~i~~~~~~~~~~k~~~~l 61 (105)
T d1xo1a1 21 IRGVEGIGAKRGYNIIRE-----FGNVLDIIDQLPLPGKQKYIQNL 61 (105)
T ss_dssp BCCCTTCCHHHHHHHHHH-----HCSHHHHHHHCSCSCCSHHHHHH
T ss_pred CcCcCCcCHHHHHHHHHH-----cchhHHHHHhHHHhhhhHHHHHH
Confidence 457899999999999964 789999976 5 5543 444444
No 64
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=73.82 E-value=0.39 Score=44.31 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=17.0
Q ss_pred CCCCEEEEeeccCCCCCcceec
Q 005960 112 HGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 112 ~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
.+....++-||++|+|||.+..
T Consensus 30 ~~~~~~lll~Gp~G~GKTtl~~ 51 (237)
T d1sxjd2 30 SANLPHMLFYGPPGTGKTSTIL 51 (237)
T ss_dssp CTTCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCeEEEECCCCCChHHHHH
Confidence 3444458899999999998753
No 65
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]}
Probab=73.57 E-value=0.88 Score=42.73 Aligned_cols=28 Identities=36% Similarity=0.416 Sum_probs=22.8
Q ss_pred cCHHHHhcCCCCCHHHHHHHHHHHhcCC
Q 005960 594 ASREELVELKGIGQRLADYICELRQSSP 621 (667)
Q Consensus 594 A~~~eL~~lpGIG~~~A~~Ii~~R~~~p 621 (667)
...++|..|||||++.|..|+-+=-..|
T Consensus 117 ~~~~~L~~lpGIG~kTA~~vl~~~~~~~ 144 (217)
T d1pu6a_ 117 VTREWLLDQKGIGKESADAILCYACAKE 144 (217)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHcCCe
Confidence 4688999999999999999987743333
No 66
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=73.10 E-value=0.87 Score=37.82 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=22.8
Q ss_pred hcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhc
Q 005960 600 VELKGIGQRLADYICELRQSSPVKSLSDLEKI 631 (667)
Q Consensus 600 ~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~v 631 (667)
-.+||||+|+|-++|. .|.+++.+.+-
T Consensus 19 pGV~GIG~ktA~kli~-----~~gsle~i~~~ 45 (105)
T d1rxwa1 19 EGVKGVGVKKALNYIK-----TYGDIFRALKA 45 (105)
T ss_dssp CCCTTCCHHHHHHHHH-----HHSSHHHHHHH
T ss_pred CCCCCcCHHHHHHHHH-----HhCCHHHHHHH
Confidence 3689999999999995 48899999773
No 67
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]}
Probab=72.08 E-value=2.6 Score=38.09 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=34.7
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHh---cC-CCCCHHHHhh-c-CCCHHHHHHHhcc
Q 005960 596 REELVELKGIGQRLADYICELRQ---SS-PVKSLSDLEK-I-GLSTKQVYNLFGK 644 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~---~~-pf~~~~dL~~-v-Gi~~~~~~~l~~~ 644 (667)
.++|..|||||++.|+-|+-+-- .. |..++- |.+ + ++.++.++++..+
T Consensus 107 ~~~L~~l~GIGpwTAd~illf~lg~~dvfP~~D~~-lr~~~~~l~~~~~~~~~~~ 160 (183)
T d1mpga1 107 MKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYL-IKQRFPGMTPAQIRRYAER 160 (183)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHSCCSSCCCTTCHH-HHHHSTTCCHHHHHHHHGG
T ss_pred HHHHHHhhcccHHHHHHHHHhhCCCCCccccchHH-HHHHhhhCCHHHHHHHHHh
Confidence 46799999999999998876522 22 565554 344 6 8998888887654
No 68
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=71.91 E-value=0.34 Score=45.20 Aligned_cols=44 Identities=23% Similarity=0.373 Sum_probs=26.3
Q ss_pred eeceeeCCCCCchhHHHHhhccchhhhhcCC--CCEEEEeeccCCCCCccee
Q 005960 83 QLDSFFGQEDESVSKIFYSEVNPLIPGIFHG--RNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 83 ~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G--~N~tIfaYGqTGSGKTyTm 132 (667)
+||-|++++. +- ..++.+|+....+ .-..++-||++|+|||.+.
T Consensus 7 ~~ddivGq~~-----~~-~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla 52 (239)
T d1ixsb2 7 TLDEYIGQER-----LK-QKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 52 (239)
T ss_dssp SGGGSCSCHH-----HH-HHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHH
T ss_pred CHHHhCCHHH-----HH-HHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 5777777542 22 2344455443322 2234677999999999865
No 69
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=71.47 E-value=0.61 Score=44.46 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=29.8
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhhhhcCCCC---EEEEeeccCCCCCccee
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIPGIFHGRN---ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl~G~N---~tIfaYGqTGSGKTyTm 132 (667)
|-.+++++..+ .-+.+.+ .+..+++.+..+-+ .+|+-||++|+|||+..
T Consensus 6 ~~~~~~i~~~~-~i~~i~~-~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la 57 (246)
T d1d2na_ 6 YIMNGIIKWGD-PVTRVLD-DGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALA 57 (246)
T ss_dssp TCTTCCCCCSH-HHHHHHH-HHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHH
T ss_pred hhccCCcCcCH-HHHHHHH-HHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHH
Confidence 66677766543 2123333 34445555443332 47999999999999864
No 70
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=70.11 E-value=0.57 Score=43.83 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=16.6
Q ss_pred CCCEEEEeeccCCCCCcceec
Q 005960 113 GRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 113 G~N~tIfaYGqTGSGKTyTm~ 133 (667)
+....|+..|+||+|||.|+.
T Consensus 4 ~~~~vi~lvGptGvGKTTTia 24 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIA 24 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 344567778999999999974
No 71
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=69.02 E-value=1.2 Score=36.95 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=22.5
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCCHHHHhhc
Q 005960 601 ELKGIGQRLADYICELRQSSPVKSLSDLEKI 631 (667)
Q Consensus 601 ~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~v 631 (667)
.||||||++|-++|+ -|.++|.|.+-
T Consensus 21 GV~GIGpktA~klIk-----~~g~ie~l~~~ 46 (108)
T d1a77a1 21 GVKGIGFKRAYELVR-----SGVAKDVLKKE 46 (108)
T ss_dssp CSTTCCHHHHHHHHH-----TTCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHH-----HcCCHHHHHHh
Confidence 689999999999996 58888888774
No 72
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=68.55 E-value=0.58 Score=43.23 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=17.0
Q ss_pred CCCCEEEEeeccCCCCCccee
Q 005960 112 HGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 112 ~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|....++-||+.|+|||.++
T Consensus 42 ~~~~~~lll~Gp~G~GKTtla 62 (231)
T d1iqpa2 42 TGSMPHLLFAGPPGVGKTTAA 62 (231)
T ss_dssp HTCCCEEEEESCTTSSHHHHH
T ss_pred cCCCCeEEEECCCCCcHHHHH
Confidence 455556889999999999875
No 73
>d1m6ya1 a.60.13.1 (A:115-215) Putative methyltransferase TM0872, insert domain {Thermotoga maritima [TaxId: 2336]}
Probab=68.53 E-value=0.95 Score=37.50 Aligned_cols=40 Identities=38% Similarity=0.517 Sum_probs=32.6
Q ss_pred ccCcccCHHHHhcC-------CCCCHHHHHHHHHHHhcCCCCCHHHHhhc
Q 005960 589 DFLNTASREELVEL-------KGIGQRLADYICELRQSSPVKSLSDLEKI 631 (667)
Q Consensus 589 v~iNtA~~~eL~~l-------pGIG~~~A~~Ii~~R~~~pf~~~~dL~~v 631 (667)
..||+++.++|..| +....++|++|++.| ||.+..||.++
T Consensus 26 ~~ln~~~~~~L~~Il~~yGee~~~a~~ia~~Iv~~R---~i~tt~~L~~~ 72 (101)
T d1m6ya1 26 KVLNELPEEELARIIFEYGEEKRFARRIARKIVENR---PLNTTLDLVKA 72 (101)
T ss_dssp HHHHHSCHHHHHHHHHHTTCCTTTHHHHHHHHHHTC---SCCBHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHhccchhhhHHHHHHHHHhc---ccccHHHHHHH
Confidence 57899999999873 335577888888888 99999999774
No 74
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=67.76 E-value=1.2 Score=40.54 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=19.6
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHh
Q 005960 596 REELVELKGIGQRLADYICELRQ 618 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~ 618 (667)
.++|..|||||++.|+.|+-+--
T Consensus 102 ~~~L~~l~GIG~wTA~~il~~~~ 124 (190)
T d2noha1 102 HKALCILPGVGTQVADCICLMAL 124 (190)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHS
T ss_pred HHHHHHcCCchHHHHHHHHHHHc
Confidence 46799999999999999887653
No 75
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}
Probab=66.83 E-value=0.81 Score=43.61 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=28.8
Q ss_pred eeeceeeCCCCCchhHHHHhhccchhhh-hc----CCCCEEEEeeccCCCCCccee
Q 005960 82 YQLDSFFGQEDESVSKIFYSEVNPLIPG-IF----HGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 82 F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~-vl----~G~N~tIfaYGqTGSGKTyTm 132 (667)
.+||-|.+.+. +.+...+.+.++... .+ ......|+-||+.|+|||+..
T Consensus 6 ~~~~di~G~~~--~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la 59 (247)
T d1ixza_ 6 VTFKDVAGAEE--AKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 59 (247)
T ss_dssp CCGGGCCSCHH--HHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CcHHHHccHHH--HHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHH
Confidence 67888887653 222223344333211 11 123346899999999999865
No 76
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.05 E-value=1.8 Score=37.35 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=22.6
Q ss_pred hcCCCCCHHHHHHHHHHHhcCCCCCHHHHhh
Q 005960 600 VELKGIGQRLADYICELRQSSPVKSLSDLEK 630 (667)
Q Consensus 600 ~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~ 630 (667)
-.|||||++.|.++|.. |.++|.+.+
T Consensus 19 pgv~gIG~ktA~kli~~-----~~~le~i~~ 44 (140)
T d1ul1x1 19 ESIRGIGPKRAVDLIQK-----HKSIEEIVR 44 (140)
T ss_dssp CCCTTCCHHHHHHHHHH-----SSSHHHHHT
T ss_pred CCCCCccHHHHHHHHHH-----hCCHHHHHH
Confidence 46899999999999875 899998855
No 77
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=65.93 E-value=0.85 Score=43.52 Aligned_cols=49 Identities=27% Similarity=0.377 Sum_probs=27.5
Q ss_pred eeceeeCCCCCchhHHHHhhccchhhh-hcC--CC--CEEEEeeccCCCCCccee
Q 005960 83 QLDSFFGQEDESVSKIFYSEVNPLIPG-IFH--GR--NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 83 ~FD~Vf~~~~~sQ~~Vf~~~v~plV~~-vl~--G~--N~tIfaYGqTGSGKTyTm 132 (667)
.||-|-+.+. .-+++-+....|+... .+. |. .-.|+-||+.|+|||+..
T Consensus 2 ~~~dv~G~~~-~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~ 55 (258)
T d1e32a2 2 GYDDVGGCRK-QLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 55 (258)
T ss_dssp CGGGCCSCSH-HHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHH
T ss_pred ChhhhccHHH-HHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHH
Confidence 4777777653 2233333222233211 222 32 345899999999999865
No 78
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=65.75 E-value=0.79 Score=42.51 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=20.9
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|..+++|.| +++..+||||||++.
T Consensus 40 aip~il~g~d--vl~~a~TGsGKT~a~ 64 (212)
T d1qdea_ 40 AIMPIIEGHD--VLAQAQSGTGKTGTF 64 (212)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHcCCC--EEeecccccchhhhh
Confidence 4556788998 688899999999986
No 79
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=65.32 E-value=0.84 Score=38.73 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.5
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.|+.+|++|||||+..
T Consensus 4 lIii~G~pGsGKTTla 19 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWA 19 (152)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999953
No 80
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=65.30 E-value=0.94 Score=37.40 Aligned_cols=15 Identities=27% Similarity=0.184 Sum_probs=12.1
Q ss_pred EeeccCCCCCcceec
Q 005960 119 FAYGATGSGKTYTMQ 133 (667)
Q Consensus 119 faYGqTGSGKTyTm~ 133 (667)
+.+++||||||+.++
T Consensus 11 il~~~tGsGKT~~~~ 25 (140)
T d1yksa1 11 VLDFHPGAGKTRRFL 25 (140)
T ss_dssp EECCCTTSSTTTTHH
T ss_pred EEEcCCCCChhHHHH
Confidence 667789999998754
No 81
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=64.80 E-value=0.93 Score=41.21 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=22.3
Q ss_pred chhhhhcCC---CCEEEEeeccCCCCCcce
Q 005960 105 PLIPGIFHG---RNATVFAYGATGSGKTYT 131 (667)
Q Consensus 105 plV~~vl~G---~N~tIfaYGqTGSGKTyT 131 (667)
+-+|.++.| ....++-||++|||||+-
T Consensus 21 ~~LD~ll~GGi~~G~~~li~G~pGsGKT~l 50 (251)
T d1szpa2 21 KNLDTLLGGGVETGSITELFGEFRTGKSQL 50 (251)
T ss_dssp HHHHHHHTSSEESSSEEEEEESTTSSHHHH
T ss_pred HHHHhhhCCCCcCCeEEEEEcCCCCCHHHH
Confidence 557788877 466899999999999974
No 82
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=63.84 E-value=0.75 Score=42.85 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=18.8
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCcce
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYT 131 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyT 131 (667)
.|..++.|.|.. ..++||||||.+
T Consensus 51 ~i~~~l~g~~~~--i~apTGsGKT~~ 74 (237)
T d1gkub1 51 WAKRILRKESFA--ATAPTGVGKTSF 74 (237)
T ss_dssp HHHHHHTTCCEE--CCCCBTSCSHHH
T ss_pred HHHHHHCCCCEE--EEecCCChHHHH
Confidence 466778999865 447999999965
No 83
>d3ci0k2 a.60.16.1 (K:94-203) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=63.12 E-value=1.6 Score=36.46 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=25.6
Q ss_pred CCCCHHHHhhc-CCCHHHHHHHhccccc
Q 005960 621 PVKSLSDLEKI-GLSTKQVYNLFGKAAK 647 (667)
Q Consensus 621 pf~~~~dL~~v-Gi~~~~~~~l~~~~~~ 647 (667)
||.++++|..| |+++..+++|+..+++
T Consensus 78 ~l~s~sEL~~v~G~~~~~~~~L~P~v~~ 105 (110)
T d3ci0k2 78 PLADISEMRVVQGMDAGLYQKLKPLVCA 105 (110)
T ss_dssp CCSSGGGGGGSTTCCHHHHHHHTTTEEC
T ss_pred CcCCHHHHhhccCCCHHHHHHHhCceee
Confidence 68999999999 9999999999999985
No 84
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=62.38 E-value=1.2 Score=41.69 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=11.2
Q ss_pred CEEEEeeccCCCCCcceec
Q 005960 115 NATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 115 N~tIfaYGqTGSGKTyTm~ 133 (667)
-..|+-.|+||+|||.|+.
T Consensus 12 p~vi~lvGptGvGKTTTiA 30 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAG 30 (211)
T ss_dssp SEEEEEECSCCC----HHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 3456668999999999964
No 85
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=61.77 E-value=3.7 Score=34.70 Aligned_cols=38 Identities=21% Similarity=0.145 Sum_probs=28.6
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCCHHHHhhc--CCCHHHHHHHhc
Q 005960 601 ELKGIGQRLADYICELRQSSPVKSLSDLEKI--GLSTKQVYNLFG 643 (667)
Q Consensus 601 ~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~v--Gi~~~~~~~l~~ 643 (667)
.||||||++|-+||+. |+++++..+. ....+.+.++..
T Consensus 21 gI~GIGpktAlklikk-----~~~~~~~~~~~~~~~~~~~~~~f~ 60 (120)
T d1b43a1 21 GIKGIGLKKALEIVRH-----SKDPLAKFQKQSDVDLYAIKEFFL 60 (120)
T ss_dssp CSTTCCHHHHHHHHHT-----CSSGGGGTGGGCSSCHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHHH-----hCCHHHHHHhccccchHHHHHHhc
Confidence 6999999999999973 6777776553 677776666544
No 86
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=60.60 E-value=1.1 Score=40.94 Aligned_cols=24 Identities=38% Similarity=0.672 Sum_probs=19.7
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
|..+++|.| |++.++||||||...
T Consensus 32 ip~il~g~d--vi~~a~tGsGKTlay 55 (206)
T d1s2ma1 32 IPVAITGRD--ILARAKNGTGKTAAF 55 (206)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEecCCcchhhhhh
Confidence 445678998 789999999999764
No 87
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}
Probab=60.55 E-value=0.99 Score=38.84 Aligned_cols=15 Identities=47% Similarity=0.700 Sum_probs=13.3
Q ss_pred EEeeccCCCCCccee
Q 005960 118 VFAYGATGSGKTYTM 132 (667)
Q Consensus 118 IfaYGqTGSGKTyTm 132 (667)
|+-+|+.|+|||+++
T Consensus 4 v~ItG~~GtGKTtl~ 18 (189)
T d2i3ba1 4 VFLTGPPGVGKTTLI 18 (189)
T ss_dssp EEEESCCSSCHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 778899999999965
No 88
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=60.20 E-value=0.69 Score=42.01 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=17.8
Q ss_pred hhhhcCCCCEEEEeeccCCCCCcce
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYT 131 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyT 131 (667)
+..+++|.| ++..++||||||++
T Consensus 34 i~~l~~~~~--~il~apTGsGKT~~ 56 (202)
T d2p6ra3 34 VEKVFSGKN--LLLAMPTAAGKTLL 56 (202)
T ss_dssp HHHHTTCSC--EEEECSSHHHHHHH
T ss_pred HHHHHcCCC--EEEEcCCCCchhHH
Confidence 445667877 46789999999976
No 89
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=60.11 E-value=1.5 Score=38.48 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=18.4
Q ss_pred CHHHHhcCCCCCHHHHHHHHHH
Q 005960 595 SREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 595 ~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
+.++|..|||||+..|+.+.-+
T Consensus 91 ~~~~l~~LpGVG~~tad~~~if 112 (144)
T d1ngna_ 91 QWRYPIELHGIGKYGNDSYRIF 112 (144)
T ss_dssp CCSSGGGSTTCCHHHHHHHHHH
T ss_pred hhhhHHhcCCccHHHHHHHHHH
Confidence 4588999999999999986544
No 90
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=60.05 E-value=1.1 Score=41.57 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=16.3
Q ss_pred CCCEEEEeeccCCCCCccee
Q 005960 113 GRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 113 G~N~tIfaYGqTGSGKTyTm 132 (667)
|.--.++-||+.|+|||.+.
T Consensus 50 ~~~~~lll~GPpG~GKTt~a 69 (253)
T d1sxja2 50 GVFRAAMLYGPPGIGKTTAA 69 (253)
T ss_dssp TSCSEEEEECSTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34457899999999999875
No 91
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=59.82 E-value=6.8 Score=27.30 Aligned_cols=44 Identities=20% Similarity=0.453 Sum_probs=32.7
Q ss_pred HHHhcCCCCCHHHHHHHHHH-----HhcC---CCCCHHHHhhc-CCCHHHHHHH
Q 005960 597 EELVELKGIGQRLADYICEL-----RQSS---PVKSLSDLEKI-GLSTKQVYNL 641 (667)
Q Consensus 597 ~eL~~lpGIG~~~A~~Ii~~-----R~~~---pf~~~~dL~~v-Gi~~~~~~~l 641 (667)
.||..-.|+|.+.|++++.. |-++ .| .++.|..| |+|...+..+
T Consensus 2 aeltkkegvgrktaerllrafgnpervkqlaref-eieklasvegvgervlrsl 54 (55)
T d2csba3 2 AELTKKEGVGRKTAERLLRAFGNPERVKQLAREF-EIEKLASVEGVGERVLRSL 54 (55)
T ss_dssp HHHHTSTTCCHHHHHHHHHHHSSHHHHHHHHHTT-CHHHHHTSTTCSHHHHHHH
T ss_pred hhhhhhccccHhHHHHHHHHhCCHHHHHHHHHHH-HHHHHHhhcchHHHHHHhc
Confidence 57888899999999999863 2222 44 57888888 9998776544
No 92
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=59.28 E-value=1.2 Score=41.77 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.1
Q ss_pred EEEEeeccCCCCCcceec
Q 005960 116 ATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm~ 133 (667)
..|+-.|+||+|||.|+-
T Consensus 10 ~vi~lvGptGvGKTTTiA 27 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIG 27 (211)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 456778999999999974
No 93
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.08 E-value=2.6 Score=34.06 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=21.3
Q ss_pred ccCHHHHhcCCCCCHHHHHHHHHH
Q 005960 593 TASREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 593 tA~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
=-+.++|..++|||++..++|+++
T Consensus 59 f~sledL~~V~Gi~~k~~eki~k~ 82 (91)
T d2edua1 59 FSQVEDLERVEGITGKQMESFLKA 82 (91)
T ss_dssp CSSGGGGGGSTTCCHHHHHHHHHH
T ss_pred CCCHHHHhcCCCCCHHHHHHHHHc
Confidence 457899999999999999999875
No 94
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=57.36 E-value=1.3 Score=40.82 Aligned_cols=44 Identities=30% Similarity=0.405 Sum_probs=25.4
Q ss_pred eeceeeCCCCCchhHHHHhhccchhhhhc-CC-CCEEEEeeccCCCCCccee
Q 005960 83 QLDSFFGQEDESVSKIFYSEVNPLIPGIF-HG-RNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 83 ~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl-~G-~N~tIfaYGqTGSGKTyTm 132 (667)
+||.+.+++ ++- ..++.+++... .| .-..++-||++|+|||.+.
T Consensus 7 ~~~divGqe-----~~~-~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA 52 (238)
T d1in4a2 7 SLDEFIGQE-----NVK-KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 52 (238)
T ss_dssp SGGGCCSCH-----HHH-HHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred cHHHcCChH-----HHH-HHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 577777754 222 23444444322 12 2234667999999999864
No 95
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=57.26 E-value=1.3 Score=41.45 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=15.0
Q ss_pred EEEEeeccCCCCCcceec
Q 005960 116 ATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm~ 133 (667)
..|+..|+||+|||.|+.
T Consensus 12 ~vi~lvGptGvGKTTTiA 29 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCG 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 356778999999999964
No 96
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=56.66 E-value=1.2 Score=42.25 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=13.5
Q ss_pred EEeeccCCCCCcceec
Q 005960 118 VFAYGATGSGKTYTMQ 133 (667)
Q Consensus 118 IfaYGqTGSGKTyTm~ 133 (667)
++..|..|||||+||.
T Consensus 17 ~lI~g~aGTGKTt~l~ 32 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVIT 32 (306)
T ss_dssp EEECCCTTSCHHHHHH
T ss_pred EEEEeeCCccHHHHHH
Confidence 5667999999999974
No 97
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=55.71 E-value=1.3 Score=40.46 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=15.3
Q ss_pred CCCCEEEEeeccCCCCCccee
Q 005960 112 HGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 112 ~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|.-..++-||++|+|||.+.
T Consensus 32 ~~~~~~lLl~Gp~G~GKttl~ 52 (227)
T d1sxjc2 32 EGKLPHLLFYGPPGTGKTSTI 52 (227)
T ss_dssp TTCCCCEEEECSSSSSHHHHH
T ss_pred cCCCCeEEEECCCCCChhHHH
Confidence 344334677999999999754
No 98
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=54.59 E-value=1.5 Score=40.68 Aligned_cols=18 Identities=44% Similarity=0.495 Sum_probs=14.6
Q ss_pred EEEEeeccCCCCCcceec
Q 005960 116 ATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm~ 133 (667)
..|+-.|++|+|||+|+.
T Consensus 11 ~vi~lvGp~GvGKTTTia 28 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAA 28 (207)
T ss_dssp EEEEEECCTTTTHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 346668999999999974
No 99
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}
Probab=54.11 E-value=1.1 Score=40.78 Aligned_cols=24 Identities=38% Similarity=0.690 Sum_probs=18.7
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
|..+++|.| |++-.+||||||...
T Consensus 32 ip~~l~G~d--vii~a~TGSGKTlay 55 (209)
T d1q0ua_ 32 IPGALRGES--MVGQSQTGTGKTHAY 55 (209)
T ss_dssp HHHHHHTCC--EEEECCSSHHHHHHH
T ss_pred HHHHHCCCC--eEeecccccccceee
Confidence 345678888 577789999999864
No 100
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=53.94 E-value=1.7 Score=42.48 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=13.7
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
..|+-||+||+|||+..
T Consensus 50 ~~iLl~GPpG~GKT~lA 66 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIA 66 (309)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45667999999999864
No 101
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=53.79 E-value=1.4 Score=40.38 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=16.9
Q ss_pred cCCCCEEEEeeccCCCCCcceec
Q 005960 111 FHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 111 l~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
-+|....++-||+.|+|||.+..
T Consensus 32 ~~~~~~~~ll~Gp~G~GKTt~a~ 54 (224)
T d1sxjb2 32 KDGNMPHMIISGMPGIGKTTSVH 54 (224)
T ss_dssp HSCCCCCEEEECSTTSSHHHHHH
T ss_pred HcCCCCeEEEECCCCCCchhhHH
Confidence 34544447779999999998753
No 102
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=53.63 E-value=1.4 Score=40.56 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=17.6
Q ss_pred cCCCCEEEEeeccCCCCCccee
Q 005960 111 FHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 111 l~G~N~tIfaYGqTGSGKTyTm 132 (667)
.++...+|+-||+.|+|||..+
T Consensus 25 ~~~~~~~i~i~G~~G~GKTsLl 46 (283)
T d2fnaa2 25 KGLRAPITLVLGLRRTGKSSII 46 (283)
T ss_dssp HHTCSSEEEEEESTTSSHHHHH
T ss_pred HhccCCEEEEEcCCCCcHHHHH
Confidence 3445567899999999999865
No 103
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.48 E-value=2 Score=39.37 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=19.5
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|..+++|.| +++-.+||||||...
T Consensus 31 aip~il~g~d--vl~~A~TGsGKTla~ 55 (207)
T d1t6na_ 31 CIPQAILGMD--VLCQAKSGMGKTAVF 55 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--eEEEecccccccccc
Confidence 3455688988 467789999999874
No 104
>d2o3fa1 a.4.1.20 (A:1-83) Putative transcriptional regulator YbbH {Bacillus subtilis [TaxId: 1423]}
Probab=53.09 E-value=3.5 Score=32.57 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhccccc
Q 005960 606 GQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKAAK 647 (667)
Q Consensus 606 G~~~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~~~ 647 (667)
-.++|+.|+++.+...+.++.||.+. |+++.++-++-.++-.
T Consensus 20 e~~ia~yil~~~~~~~~~si~~lA~~~~vS~sTi~Rf~kklG~ 62 (83)
T d2o3fa1 20 ERKLADYILAHPHKAIESTVNEISALANSSDAAVIRLCKSLGL 62 (83)
T ss_dssp HHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCHHHHHHccHHHHHHHHCCCHHHHHHHHHHhCC
Confidence 36899999999999999999999997 9999999998877743
No 105
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=52.86 E-value=1.2 Score=42.77 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=13.6
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.++.-|..|||||+||
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4667799999999996
No 106
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.52 E-value=2.4 Score=38.72 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=19.6
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|..+++|.|+ ++..+||||||...
T Consensus 33 aip~il~g~dv--l~~a~TGsGKTlay 57 (206)
T d1veca_ 33 SIPIALSGRDI--LARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCCE--EEECCSSSTTHHHH
T ss_pred HHHHHHcCCCE--EeeccCcccccccc
Confidence 34567899885 66789999999875
No 107
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=51.61 E-value=5 Score=36.43 Aligned_cols=29 Identities=31% Similarity=0.520 Sum_probs=22.4
Q ss_pred cchhhhhcCC---CCEEEEeeccCCCCCccee
Q 005960 104 NPLIPGIFHG---RNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 104 ~plV~~vl~G---~N~tIfaYGqTGSGKTyTm 132 (667)
-+-+|.++.| ....++-||.+|+|||.-+
T Consensus 12 ~~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~ 43 (242)
T d1tf7a2 12 VVRLDEMCGGGFFKDSIILATGATGTGKTLLV 43 (242)
T ss_dssp CHHHHHHTTSSEESSCEEEEEECTTSSHHHHH
T ss_pred cHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHH
Confidence 3457777876 5678899999999998743
No 108
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}
Probab=51.26 E-value=1.6 Score=43.15 Aligned_cols=19 Identities=53% Similarity=0.777 Sum_probs=15.4
Q ss_pred CCCCEEEEeeccCCCCCccee
Q 005960 112 HGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 112 ~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|.| |+..|.||||||.+|
T Consensus 165 ~~~n--ili~G~tgSGKTT~l 183 (323)
T d1g6oa_ 165 IGKN--VIVCGGTGSGKTTYI 183 (323)
T ss_dssp HTCC--EEEEESTTSSHHHHH
T ss_pred hCCC--EEEEeeccccchHHH
Confidence 4566 566999999999976
No 109
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=50.52 E-value=2.7 Score=38.32 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=22.1
Q ss_pred cchhhhhcCC---CCEEEEeeccCCCCCcce
Q 005960 104 NPLIPGIFHG---RNATVFAYGATGSGKTYT 131 (667)
Q Consensus 104 ~plV~~vl~G---~N~tIfaYGqTGSGKTyT 131 (667)
-+-+|.++.| .+..++-+|++|||||.-
T Consensus 22 i~~LD~ll~GGlp~G~~~li~G~pGsGKT~~ 52 (254)
T d1pzna2 22 SKSLDKLLGGGIETQAITEVFGEFGSGKTQL 52 (254)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHH
T ss_pred CHHHHHhhcCCccCCEEEEEEcCCCCCHHHH
Confidence 3556777776 366899999999999984
No 110
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.29 E-value=1.5 Score=38.42 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=15.8
Q ss_pred CCC-CEEEEeeccCCCCCcce
Q 005960 112 HGR-NATVFAYGATGSGKTYT 131 (667)
Q Consensus 112 ~G~-N~tIfaYGqTGSGKTyT 131 (667)
.|+ .++||-.|..|||||+.
T Consensus 15 ~~~~g~vI~L~G~pGSGKTTi 35 (195)
T d1x6va3 15 GGFRGCTVWLTGLSGAGKTTV 35 (195)
T ss_dssp CSCCCEEEEEESSCHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHH
Confidence 344 56788999999999873
No 111
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}
Probab=50.15 E-value=9.4 Score=35.17 Aligned_cols=56 Identities=16% Similarity=0.237 Sum_probs=40.2
Q ss_pred cCcccCHHHHh-cCCCCC--HHHHHHHHHH-------HhcCCCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 590 FLNTASREELV-ELKGIG--QRLADYICEL-------RQSSPVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 590 ~iNtA~~~eL~-~lpGIG--~~~A~~Ii~~-------R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
.+=.|+.++|+ .|.|+| ..+|++|.+. ..-.--.+.++|..+ |||+++..-+....
T Consensus 67 ~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~LpGVG~kTA~~il~~~ 133 (217)
T d1keaa_ 67 DILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLA 133 (217)
T ss_dssp HHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTTSCCSCHHHHHTSTTCCHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCCcchhhHHHHHHHhhhhhhhHHHHHHh
Confidence 44467888885 589999 4577776542 222234689999999 99999988877654
No 112
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=49.37 E-value=2.1 Score=38.94 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=16.0
Q ss_pred hhhcCCCCEEEEeeccCCCCCcceec
Q 005960 108 PGIFHGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 108 ~~vl~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
+.++++.++.| .++||+|||+++.
T Consensus 80 ~~~~~~~~~ll--~~~tG~GKT~~a~ 103 (206)
T d2fz4a1 80 ERWLVDKRGCI--VLPTGSGKTHVAM 103 (206)
T ss_dssp HHHTTTSEEEE--EESSSTTHHHHHH
T ss_pred HHHHhCCCcEE--EeCCCCCceehHH
Confidence 44555555443 3589999998754
No 113
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=47.38 E-value=3.6 Score=38.73 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=23.7
Q ss_pred hccchhhhhcCCCCEEEEeeccCCCCCcce
Q 005960 102 EVNPLIPGIFHGRNATVFAYGATGSGKTYT 131 (667)
Q Consensus 102 ~v~plV~~vl~G~N~tIfaYGqTGSGKTyT 131 (667)
++..+..++-.+.-...+-+|.+|||||-.
T Consensus 63 ~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V 92 (233)
T d2eyqa3 63 AINAVLSDMCQPLAMDRLVCGDVGFGKTEV 92 (233)
T ss_dssp HHHHHHHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHHHHHHhccCccCeEEEcCCCCCcHHH
Confidence 344666677778888889999999999964
No 114
>d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}
Probab=47.30 E-value=5.6 Score=30.36 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=25.0
Q ss_pred cccCcccCHHHHhcCCCCCHHHHHHHHHHHhc
Q 005960 588 IDFLNTASREELVELKGIGQRLADYICELRQS 619 (667)
Q Consensus 588 ~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~ 619 (667)
.-++=..+.++|..+||+|++..+.|.+.=++
T Consensus 31 v~dL~~~s~~dLl~i~n~G~ksl~EI~~~L~~ 62 (69)
T d1doqa_ 31 VRALLALNLKDLKNIPGIGERSLEEIKEALEK 62 (69)
T ss_dssp HHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 33444678999999999999999998776443
No 115
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.27 E-value=2.8 Score=38.99 Aligned_cols=25 Identities=40% Similarity=0.615 Sum_probs=19.5
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|..+++|.|. ++-.+||||||.+.
T Consensus 47 aIp~il~g~dv--i~~a~TGSGKTlay 71 (222)
T d2j0sa1 47 AIKQIIKGRDV--IAQSQSGTGKTATF 71 (222)
T ss_dssp HHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHHCCCCe--EEEcCcchhhhhhh
Confidence 45567889885 56789999999874
No 116
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}
Probab=47.20 E-value=2.6 Score=35.65 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=12.8
Q ss_pred EEEeeccCCCCCcce
Q 005960 117 TVFAYGATGSGKTYT 131 (667)
Q Consensus 117 tIfaYGqTGSGKTyT 131 (667)
.|+-.|++|||||+.
T Consensus 4 lI~i~G~~GsGKTTv 18 (176)
T d2bdta1 4 LYIITGPAGVGKSTT 18 (176)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367789999999985
No 117
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=47.12 E-value=3 Score=35.43 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=13.8
Q ss_pred EEEEeeccCCCCCcce
Q 005960 116 ATVFAYGATGSGKTYT 131 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyT 131 (667)
.+|+-.|..|||||+.
T Consensus 7 ~~I~l~G~~GsGKTTi 22 (183)
T d1m8pa3 7 FTIFLTGYMNSGKDAI 22 (183)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5788889999999974
No 118
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.66 E-value=2.5 Score=39.10 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=18.9
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
|..++.|.|. ++-.+||||||.+.
T Consensus 43 ip~il~g~dv--l~~a~TGsGKTlay 66 (218)
T d2g9na1 43 ILPCIKGYDV--IAQAQSGTGKTATF 66 (218)
T ss_dssp HHHHHHTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHcCCCE--EEEcccchhhhhhh
Confidence 3456789884 67889999999875
No 119
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=46.31 E-value=2.6 Score=43.52 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=13.9
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
-|+..|+||+|||+-.
T Consensus 51 NILliGPTGvGKTlLA 66 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIA 66 (443)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4788999999999864
No 120
>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]}
Probab=45.89 E-value=6.8 Score=32.67 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=32.0
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHHhccc
Q 005960 596 REELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFGKA 645 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~~~~ 645 (667)
.-.|..|.|||+..|..|.+.=.-.|...+.| ++..++++|.+.+
T Consensus 15 ~~ALt~I~GIG~~~A~~Ic~~lgid~~~kv~~-----Lt~~qi~~l~~~i 59 (114)
T d2gy9m1 15 VIALTSIYGVGKTRSKAILAAAGIAEDVKISE-----LSEGQIDTLRDEV 59 (114)
T ss_dssp HHHHTTSSSCCHHHHHHHHHHHTCCTTSBTTS-----CCHHHHHHHHHHH
T ss_pred EEEeeeeeCcCHHHHHHHHHHcCCCcccccCc-----ccHHHHHHHHHHH
Confidence 34689999999999999997664445554444 4667777776654
No 121
>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=45.44 E-value=4.2 Score=33.28 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=24.3
Q ss_pred ccCHHHHhcCCCCCHHHHHHHHHHHhcC
Q 005960 593 TASREELVELKGIGQRLADYICELRQSS 620 (667)
Q Consensus 593 tA~~~eL~~lpGIG~~~A~~Ii~~R~~~ 620 (667)
-.+.++|..++|||++..++|-+|....
T Consensus 49 f~s~edL~~V~GIg~~~~e~lk~yl~~f 76 (98)
T d2axtu1 49 YESVEDVLNIPGLTERQKQILRENLEHF 76 (98)
T ss_dssp CSSGGGGGGCTTCCTTHHHHHHHHGGGE
T ss_pred cCCHHHHhhCCCCCHHHHHHHHHHHhcc
Confidence 4578999999999999999999988633
No 122
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=45.35 E-value=3.1 Score=37.30 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=22.7
Q ss_pred chhhhhcCC-C--CEEEEeeccCCCCCccee
Q 005960 105 PLIPGIFHG-R--NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 105 plV~~vl~G-~--N~tIfaYGqTGSGKTyTm 132 (667)
+-+|.++.| + ...+.-+|.+|+|||..+
T Consensus 21 ~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~ 51 (258)
T d2i1qa2 21 SELDSVLGGGLESQSVTEFAGVFGSGKTQIM 51 (258)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCCccCCeEEEEEeCCCCCHHHHH
Confidence 557888877 3 668889999999999764
No 123
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=44.86 E-value=5.6 Score=34.47 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=40.3
Q ss_pred ccCcccCHHHHhc-CCCCC--HHHHHHHHHHHhcC-CCCCHHHHhhc-CCCHHHHHHHhc
Q 005960 589 DFLNTASREELVE-LKGIG--QRLADYICELRQSS-PVKSLSDLEKI-GLSTKQVYNLFG 643 (667)
Q Consensus 589 v~iNtA~~~eL~~-lpGIG--~~~A~~Ii~~R~~~-pf~~~~dL~~v-Gi~~~~~~~l~~ 643 (667)
-.+-.|+.++|+. |.++| ..+|++|++.=+.. | ++.+||.++ |||+...+.++-
T Consensus 53 e~la~a~~~el~~~Ir~~G~~~~KAk~I~~~a~~~ip-~~~~~l~~LpGVG~~tad~~~i 111 (144)
T d1ngna_ 53 EVARAADWRDVSELLKPLGLYDLRAKTIIKFSDEYLT-KQWRYPIELHGIGKYGNDSYRI 111 (144)
T ss_dssp HHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHH-SCCSSGGGSTTCCHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHhhhhHHHHHHHHHHHHhhHhh-hhhhhHHhcCCccHHHHHHHHH
Confidence 4556788899855 56666 67999998865544 3 366889999 999999877543
No 124
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.75 E-value=13 Score=28.26 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=26.9
Q ss_pred CCCCHHHHhhc-CCCHHHHHHHhccccccccC
Q 005960 621 PVKSLSDLEKI-GLSTKQVYNLFGKAAKGIFD 651 (667)
Q Consensus 621 pf~~~~dL~~v-Gi~~~~~~~l~~~~~~~~~~ 651 (667)
|..+++||..+ |||++..++|..-+..|-+.
T Consensus 41 ~i~~~~~l~~lpGiG~~i~~kI~Eil~tG~l~ 72 (76)
T d2bcqa1 41 PVTSYQEACSIPGIGKRMAEKIIEILESGHLR 72 (76)
T ss_dssp CCCCHHHHHTSTTCCHHHHHHHHHHHHSSSCG
T ss_pred ccCCHHHHhcCCCccHHHHHHHHHHHHhCccH
Confidence 88999999999 99999999998888776543
No 125
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}
Probab=43.58 E-value=3.2 Score=35.29 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=13.2
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
-|+-.|..|||||+..
T Consensus 5 iI~l~G~~GsGKsTva 20 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIV 20 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777899999999753
No 126
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.46 E-value=2.7 Score=38.60 Aligned_cols=16 Identities=31% Similarity=0.677 Sum_probs=14.1
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
.++-||+.|+|||.+.
T Consensus 35 ~lll~Gp~G~GKTt~~ 50 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRC 50 (252)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999865
No 127
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.24 E-value=3.9 Score=35.36 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=20.0
Q ss_pred chhhhhcCCC---CEEEEeeccCCCCCcce
Q 005960 105 PLIPGIFHGR---NATVFAYGATGSGKTYT 131 (667)
Q Consensus 105 plV~~vl~G~---N~tIfaYGqTGSGKTyT 131 (667)
+-+|.++.|- ...+.-+|++|||||.-
T Consensus 10 ~~LD~ll~GGi~~G~v~~i~G~~GsGKT~l 39 (242)
T d1n0wa_ 10 KELDKLLQGGIETGSITEMFGEFRTGKTQI 39 (242)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEEeCCCCCHHHH
Confidence 4456777643 55788899999999964
No 128
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=43.21 E-value=3.5 Score=38.52 Aligned_cols=25 Identities=44% Similarity=0.659 Sum_probs=19.2
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|..+++|.|+ ++-.+||||||.+.
T Consensus 51 ~ip~il~g~dv--vi~a~TGsGKTlay 75 (238)
T d1wrba1 51 AIPAILEHRDI--MACAQTGSGKTAAF 75 (238)
T ss_dssp HHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HhhhhhCCCCE--EEECCCCCCcceee
Confidence 34456789885 66779999999974
No 129
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}
Probab=43.17 E-value=2.5 Score=42.36 Aligned_cols=16 Identities=38% Similarity=0.735 Sum_probs=13.9
Q ss_pred EEeeccCCCCCcceec
Q 005960 118 VFAYGATGSGKTYTMQ 133 (667)
Q Consensus 118 IfaYGqTGSGKTyTm~ 133 (667)
++.+|.||||||++|.
T Consensus 53 ~~I~G~tGsGKT~~l~ 68 (433)
T d1e9ra_ 53 LLVNGATGTGKSVLLR 68 (433)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEEeCCCCcHHHHHH
Confidence 6789999999999864
No 130
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
Probab=42.60 E-value=5.7 Score=39.57 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=13.8
Q ss_pred EEEeeccCCCCCcceec
Q 005960 117 TVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm~ 133 (667)
..+-.|+.|||||+|+.
T Consensus 165 ~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 165 ISVISGGPGTGKTTTVA 181 (359)
T ss_dssp EEEEECCTTSTHHHHHH
T ss_pred eEEEEcCCCCCceehHH
Confidence 45557999999999974
No 131
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=42.39 E-value=4.9 Score=33.34 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=13.5
Q ss_pred CCCCEEEEeeccCCCCCcce
Q 005960 112 HGRNATVFAYGATGSGKTYT 131 (667)
Q Consensus 112 ~G~N~tIfaYGqTGSGKTyT 131 (667)
++|.. .+..++||||||+.
T Consensus 6 ~~~~~-~ll~apTGsGKT~~ 24 (136)
T d1a1va1 6 QSFQV-AHLHAPTGSGKSTK 24 (136)
T ss_dssp SSCEE-EEEECCTTSCTTTH
T ss_pred cCCCE-EEEEeCCCCCHHHH
Confidence 44544 45588999999964
No 132
>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}
Probab=41.53 E-value=0.61 Score=39.19 Aligned_cols=39 Identities=31% Similarity=0.365 Sum_probs=26.4
Q ss_pred HhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhh-c-CCCHHHHHHHh
Q 005960 599 LVELKGIGQRLADYICELRQSSPVKSLSDLEK-I-GLSTKQVYNLF 642 (667)
Q Consensus 599 L~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~-v-Gi~~~~~~~l~ 642 (667)
+-.+||||+|+|.+++. -|.+++++.+ . -+.++.-++|.
T Consensus 20 ipGv~GiG~KtA~kll~-----~~gsle~i~~~~~~i~~k~~~~l~ 60 (116)
T d1cmwa1 20 LPGVKGIGEKTARKLLE-----EWGSLEALLKNLDRLKPAIREKIL 60 (116)
T ss_dssp CCCCCCSTTCTTTTTGG-----GGGTTCSSSSSCCCCCTTTTHHHH
T ss_pred cccccccCchhHHHHHH-----hcchHHHHHHHHhhhccchhhhhH
Confidence 45689999999998874 4778887765 3 44444444443
No 133
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=41.44 E-value=3.9 Score=36.15 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=14.4
Q ss_pred CEEEEeeccCCCCCcce
Q 005960 115 NATVFAYGATGSGKTYT 131 (667)
Q Consensus 115 N~tIfaYGqTGSGKTyT 131 (667)
-..|+..|..|||||+-
T Consensus 14 p~liil~G~pGsGKST~ 30 (172)
T d1yj5a2 14 PEVVVAVGFPGAGKSTF 30 (172)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 45789999999999973
No 134
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}
Probab=41.36 E-value=3.6 Score=35.08 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=12.5
Q ss_pred EEEeeccCCCCCcce
Q 005960 117 TVFAYGATGSGKTYT 131 (667)
Q Consensus 117 tIfaYGqTGSGKTyT 131 (667)
-|+-.|+.|||||+.
T Consensus 7 ~I~i~G~~GsGKTT~ 21 (174)
T d1y63a_ 7 NILITGTPGTGKTSM 21 (174)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 467779999999984
No 135
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]}
Probab=41.23 E-value=5.4 Score=29.93 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=20.3
Q ss_pred ccCHHHHhcCCCCCHHHHHHHHHH
Q 005960 593 TASREELVELKGIGQRLADYICEL 616 (667)
Q Consensus 593 tA~~~eL~~lpGIG~~~A~~Ii~~ 616 (667)
-.+.+||..++|||++..++|-.|
T Consensus 39 f~s~edL~~v~gi~~~~~~~i~~~ 62 (65)
T d2duya1 39 YARVEDLLKVKGIGPATLERLRPY 62 (65)
T ss_dssp CSSGGGGGGSTTCCHHHHHHHGGG
T ss_pred CCCHHHHHhCCCCCHHHHHHHHHH
Confidence 457899999999999999988543
No 136
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=41.20 E-value=3.5 Score=36.49 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=12.6
Q ss_pred CCCEEEEeeccCCCCCccee
Q 005960 113 GRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 113 G~N~tIfaYGqTGSGKTyTm 132 (667)
+.|+ | ..++||||||++.
T Consensus 23 ~~n~-l-v~~pTGsGKT~i~ 40 (200)
T d1wp9a1 23 ETNC-L-IVLPTGLGKTLIA 40 (200)
T ss_dssp GSCE-E-EECCTTSCHHHHH
T ss_pred cCCe-E-EEeCCCCcHHHHH
Confidence 3463 3 4489999999753
No 137
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]}
Probab=41.07 E-value=9.2 Score=32.38 Aligned_cols=45 Identities=24% Similarity=0.257 Sum_probs=31.8
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHHhccc
Q 005960 596 REELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFGKA 645 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~~~~ 645 (667)
.-.|..|.|||+..|..|.+.=.-.|..-+.|| +.+++++|++-+
T Consensus 15 ~~ALt~I~GIG~~~A~~Ic~~lgId~~~k~~~L-----t~~qi~~I~~~i 59 (125)
T d2uubm1 15 DVALTYIYGIGKARAKEALEKTGINPATRVKDL-----TEAEVVRLREYV 59 (125)
T ss_dssp HHHHTTSTTCCHHHHHHHHHTTTCCTTSBGGGC-----CHHHHHHHHHHH
T ss_pred EEeeeeeeCcCHHHHHHHHHHcCCCcccccccc-----cHHHHHHHHHHH
Confidence 457899999999999999986543365555554 556666666543
No 138
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=40.72 E-value=15 Score=27.77 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 607 QRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 607 ~~~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
..++++|-+.|+.+.+ +.+||.+. ||+...+.+|.+.-
T Consensus 7 ~~ig~~lr~~R~~~g~-sq~~lA~~~gis~~~i~~~E~g~ 45 (79)
T d1y9qa1 7 SQIANQLKNLRKSRGL-SLDATAQLTGVSKAMLGQIERGE 45 (79)
T ss_dssp HHHHHHHHHHHHHTTC-CHHHHHHHHSSCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHCcchhHHHHHHcCC
Confidence 3567788888888888 88889886 99988888887653
No 139
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=40.65 E-value=2.3 Score=38.30 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=17.6
Q ss_pred hhhcCCCCEEEEeeccCCCCCccee
Q 005960 108 PGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 108 ~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+.+++|.|+ +.--+||||||..+
T Consensus 35 ~~~l~g~~v--lv~apTGsGKT~~~ 57 (206)
T d1oywa2 35 DTVLSGRDC--LVVMPTGGGKSLCY 57 (206)
T ss_dssp HHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHcCCCE--EEEcCCCCCCcchh
Confidence 456789885 55578999999764
No 140
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=40.32 E-value=3.3 Score=39.84 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=25.4
Q ss_pred chhHHHHhhccchhhhhcCCCCEEEEeeccCCCCCcce
Q 005960 94 SVSKIFYSEVNPLIPGIFHGRNATVFAYGATGSGKTYT 131 (667)
Q Consensus 94 sQ~~Vf~~~v~plV~~vl~G~N~tIfaYGqTGSGKTyT 131 (667)
.|..+++ .+..++-.+....-+-+|.+|||||-.
T Consensus 87 ~Q~~ai~----ei~~d~~~~~~m~rLL~GdvGSGKT~V 120 (264)
T d1gm5a3 87 AQKRAHQ----EIRNDMISEKPMNRLLQGDVGSGKTVV 120 (264)
T ss_dssp HHHHHHH----HHHHHHHSSSCCCCEEECCSSSSHHHH
T ss_pred hHHHHHH----HHHHHhhccCcceeeeeccccccccHH
Confidence 5555544 566666777777789999999999964
No 141
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}
Probab=40.28 E-value=3.9 Score=34.80 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=12.5
Q ss_pred EEEeeccCCCCCcce
Q 005960 117 TVFAYGATGSGKTYT 131 (667)
Q Consensus 117 tIfaYGqTGSGKTyT 131 (667)
-|+..|..|||||+.
T Consensus 8 iivl~G~~GsGKsT~ 22 (171)
T d1knqa_ 8 IYVLMGVSGSGKSAV 22 (171)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 456689999999985
No 142
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}
Probab=40.07 E-value=4 Score=33.87 Aligned_cols=14 Identities=36% Similarity=0.729 Sum_probs=11.6
Q ss_pred EEeeccCCCCCcce
Q 005960 118 VFAYGATGSGKTYT 131 (667)
Q Consensus 118 IfaYGqTGSGKTyT 131 (667)
|+-.|+.|||||..
T Consensus 5 I~l~G~~GsGKSTv 18 (169)
T d1kaga_ 5 IFLVGPMGAGKSTI 18 (169)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56679999999964
No 143
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=38.58 E-value=4.2 Score=34.40 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=12.2
Q ss_pred EEeeccCCCCCccee
Q 005960 118 VFAYGATGSGKTYTM 132 (667)
Q Consensus 118 IfaYGqTGSGKTyTm 132 (667)
|+-.|+.|||||+..
T Consensus 7 I~i~G~pGsGKTTia 21 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLG 21 (173)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999853
No 144
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]}
Probab=38.33 E-value=4 Score=36.33 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=23.1
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhh
Q 005960 597 EELVELKGIGQRLADYICELRQSSPVKSLSDLEK 630 (667)
Q Consensus 597 ~eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~ 630 (667)
..|..|+||||++|+..=+ ....++.||..
T Consensus 10 ~~i~~lkGvGpk~~~~L~k----lgI~ti~DLL~ 39 (180)
T d1gm5a2 10 TDIQYAKGVGPNRKKKLKK----LGIETLRDLLE 39 (180)
T ss_dssp CCSSSSSSCCHHHHHHHHT----TTCCSSGGGTS
T ss_pred CChhhcCCcCHHHHHHHHH----hCCCcHHHHHH
Confidence 3688999999999987632 37778888765
No 145
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]}
Probab=37.72 E-value=8.2 Score=29.68 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=18.3
Q ss_pred cccCHHHHhcCCCCCHHHHHH
Q 005960 592 NTASREELVELKGIGQRLADY 612 (667)
Q Consensus 592 NtA~~~eL~~lpGIG~~~A~~ 612 (667)
.-.+.++|..|+|||++++++
T Consensus 41 ~P~s~~~L~~I~G~g~~k~~~ 61 (77)
T d1wuda1 41 MPITASEMLSVNGVGMRKLER 61 (77)
T ss_dssp CCCSHHHHHTSTTCCHHHHHH
T ss_pred CCCCHHHHhCCCCCCHHHHHH
Confidence 367899999999999998875
No 146
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}
Probab=37.48 E-value=3.2 Score=40.40 Aligned_cols=42 Identities=26% Similarity=0.496 Sum_probs=25.7
Q ss_pred eeeeceeeCCCCCchhHHHHhhccchhhhhc-CCCCEEEEeeccCCCCCccee
Q 005960 81 CYQLDSFFGQEDESVSKIFYSEVNPLIPGIF-HGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 81 ~F~FD~Vf~~~~~sQ~~Vf~~~v~plV~~vl-~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|.|..|+|++. ..+.|+-.+. .|. .-|+-+|..|+|||...
T Consensus 3 ~~~f~~I~Gq~~---------~kral~laa~~~~~-h~vLl~G~pG~GKT~la 45 (333)
T d1g8pa_ 3 VFPFSAIVGQED---------MKLALLLTAVDPGI-GGVLVFGDRGTGKSTAV 45 (333)
T ss_dssp CCCGGGSCSCHH---------HHHHHHHHHHCGGG-CCEEEECCGGGCTTHHH
T ss_pred CCChhhccCcHH---------HHHHHHHHHhccCC-CeEEEECCCCccHHHHH
Confidence 378888888631 1222322322 232 24789999999999753
No 147
>d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]}
Probab=37.03 E-value=18 Score=26.55 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 608 RLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 608 ~~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
+++++|-+.|++..+ +.+||.+. ||+...+.+|....
T Consensus 9 ~~g~~ik~~R~~~gl-tq~~lA~~~gis~~~i~~~E~g~ 46 (69)
T d1y7ya1 9 KFGQRLRELRTAKGL-SQETLAFLSGLDRSYVGGVERGQ 46 (69)
T ss_dssp HHHHHHHHHHHHTTC-CHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCC-CHHHHHhHhCCCHHHHHHHHCCC
Confidence 467888899999898 88999997 99999999887643
No 148
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.40 E-value=8.5 Score=30.86 Aligned_cols=21 Identities=14% Similarity=0.310 Sum_probs=17.9
Q ss_pred cccCHHHHhcCCCCCHHHHHH
Q 005960 592 NTASREELVELKGIGQRLADY 612 (667)
Q Consensus 592 NtA~~~eL~~lpGIG~~~A~~ 612 (667)
--.+.++|..|+|+|++++++
T Consensus 50 ~P~t~~eL~~I~G~g~~k~~k 70 (94)
T d2e1fa1 50 RPTTVENVKRIDGVSEGKAAM 70 (94)
T ss_dssp CCCSHHHHTTSTTCCHHHHHH
T ss_pred CCCCHHHHcCCCCCCHHHHHH
Confidence 356889999999999998864
No 149
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=35.72 E-value=5.4 Score=35.24 Aligned_cols=16 Identities=31% Similarity=0.688 Sum_probs=13.2
Q ss_pred EEEEeeccCCCCCcce
Q 005960 116 ATVFAYGATGSGKTYT 131 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyT 131 (667)
..|+-.|+.|||||+-
T Consensus 9 ~iI~i~GppGSGKsT~ 24 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQ 24 (196)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3577889999999874
No 150
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.57 E-value=19 Score=27.91 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=25.9
Q ss_pred CCCCHHHHhhc-CCCHHHHHHHhcccccccc
Q 005960 621 PVKSLSDLEKI-GLSTKQVYNLFGKAAKGIF 650 (667)
Q Consensus 621 pf~~~~dL~~v-Gi~~~~~~~l~~~~~~~~~ 650 (667)
|..+.+||.++ |||++..++|..-+..|-+
T Consensus 43 ~i~~~~~l~~i~GIGk~ia~kI~E~~~TG~~ 73 (82)
T d2fmpa1 43 KIKSGAEAKKLPGVGTKIAEKIDEFLATGKL 73 (82)
T ss_dssp CCCCHHHHHTSTTCCHHHHHHHHHHHHHSSC
T ss_pred ccCCHHHHhcCCCccHHHHHHHHHHHHhCCh
Confidence 77999999999 9999999999887766544
No 151
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}
Probab=35.07 E-value=4.8 Score=35.43 Aligned_cols=15 Identities=40% Similarity=0.445 Sum_probs=12.8
Q ss_pred EEeeccCCCCCccee
Q 005960 118 VFAYGATGSGKTYTM 132 (667)
Q Consensus 118 IfaYGqTGSGKTyTm 132 (667)
|+-.|+.|||||+..
T Consensus 6 I~i~GppGsGKsT~a 20 (189)
T d1zaka1 6 VMISGAPASGKGTQC 20 (189)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 778899999998853
No 152
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}
Probab=34.95 E-value=5.4 Score=43.53 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.3
Q ss_pred CCCCEEEEeeccCCCCCcceec
Q 005960 112 HGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 112 ~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
.|.|-||+.-|.+|||||.+..
T Consensus 122 ~~~nQsIiisGeSGaGKTe~~k 143 (712)
T d1d0xa2 122 DRQNQSLLITGESGAGKTENTK 143 (712)
T ss_dssp HTCCEEEEEECSTTSSHHHHHH
T ss_pred hCCCceEEEeCCCCCCHHHHHH
Confidence 5899999999999999999874
No 153
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=34.84 E-value=6 Score=34.72 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.4
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
..|+..|.+|||||+.-
T Consensus 3 ~li~l~GlpgsGKSTla 19 (213)
T d1bifa1 3 TLIVMVGLPARGKTYIS 19 (213)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46889999999999863
No 154
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Probab=34.60 E-value=4.5 Score=34.70 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.0
Q ss_pred EEeeccCCCCCccee
Q 005960 118 VFAYGATGSGKTYTM 132 (667)
Q Consensus 118 IfaYGqTGSGKTyTm 132 (667)
|+--|++|+|||+.+
T Consensus 3 i~I~G~~G~GKSTLl 17 (178)
T d1ye8a1 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcHHHHHH
Confidence 677899999999865
No 155
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.28 E-value=7.9 Score=34.79 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=20.4
Q ss_pred chhhhhcCCC---CEEEEeeccCCCCCcce
Q 005960 105 PLIPGIFHGR---NATVFAYGATGSGKTYT 131 (667)
Q Consensus 105 plV~~vl~G~---N~tIfaYGqTGSGKTyT 131 (667)
+-+|.++.|- ...++-+|++|+|||.-
T Consensus 24 ~~LD~~lgGGip~G~~~~i~G~~GsGKT~l 53 (258)
T d1v5wa_ 24 QEFDKLLGGGIESMAITEAFGEFRTGKTQL 53 (258)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHH
Confidence 4466666543 55889999999999974
No 156
>d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]}
Probab=34.15 E-value=22 Score=26.50 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhcc
Q 005960 607 QRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGK 644 (667)
Q Consensus 607 ~~~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~ 644 (667)
+.++++|=++|+++.+ +.++|.+. ||+...+.+|...
T Consensus 9 ~~~g~~ik~~R~~~gl-tq~~lA~~~gis~~~i~~~e~g 46 (77)
T d2b5aa1 9 RKFGRTLKKIRTQKGV-SQEELADLAGLHRTYISEVERG 46 (77)
T ss_dssp HHHHHHHHHHHHHTTC-CHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHCCCHHHHHHHHcC
Confidence 3456777778877777 77788776 8888888877664
No 157
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=33.97 E-value=5.3 Score=44.11 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.5
Q ss_pred CCCCEEEEeeccCCCCCccee
Q 005960 112 HGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 112 ~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|.|-||+.-|.+|||||.+.
T Consensus 118 ~~~nQ~IiisGESGaGKTe~~ 138 (789)
T d1kk8a2 118 DRENQSCLITGESGAGKTENT 138 (789)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred hCCCcEEEEEeCCCCCHHHHH
Confidence 689999999999999999884
No 158
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}
Probab=33.88 E-value=7.8 Score=38.59 Aligned_cols=17 Identities=29% Similarity=0.188 Sum_probs=14.7
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
-+++-||+.|+|||+..
T Consensus 155 ~~~~~~g~~~~gk~~~~ 171 (362)
T d1svma_ 155 RYWLFKGPIDSGKTTLA 171 (362)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 48899999999999854
No 159
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}
Probab=33.49 E-value=5.3 Score=35.17 Aligned_cols=15 Identities=47% Similarity=0.740 Sum_probs=13.0
Q ss_pred EEEeeccCCCCCcce
Q 005960 117 TVFAYGATGSGKTYT 131 (667)
Q Consensus 117 tIfaYGqTGSGKTyT 131 (667)
.|+-+|+.|||||+.
T Consensus 8 iI~i~G~pGSGKsT~ 22 (194)
T d1qf9a_ 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999874
No 160
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=33.39 E-value=6.1 Score=33.56 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=14.0
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
-.|+-.|..|||||+..
T Consensus 2 kiI~i~G~~GsGKsT~~ 18 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSS 18 (190)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35788899999999854
No 161
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=33.25 E-value=5.5 Score=33.83 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=12.9
Q ss_pred EEEeeccCCCCCcce
Q 005960 117 TVFAYGATGSGKTYT 131 (667)
Q Consensus 117 tIfaYGqTGSGKTyT 131 (667)
.|+-.|++|||||+.
T Consensus 6 iI~l~G~~GsGKSTi 20 (176)
T d1zp6a1 6 ILLLSGHPGSGKSTI 20 (176)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477889999999985
No 162
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=33.24 E-value=4.3 Score=40.50 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=17.6
Q ss_pred CCCCEEEEeeccCCCCCcceecc
Q 005960 112 HGRNATVFAYGATGSGKTYTMQG 134 (667)
Q Consensus 112 ~G~N~tIfaYGqTGSGKTyTm~G 134 (667)
.-.++.++.-+..||||||||.+
T Consensus 13 ~p~~g~~lv~A~AGsGKT~~l~~ 35 (485)
T d1w36b1 13 LPLQGERLIEASAGTGKTFTIAA 35 (485)
T ss_dssp CCCSSCEEEECCTTSCHHHHHHH
T ss_pred CCCCCCeEEEEcCchHHHHHHHH
Confidence 34455677788899999999754
No 163
>d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}
Probab=32.94 E-value=14 Score=28.24 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=23.9
Q ss_pred ccCHHHHhcCCCCCHHHHHHHHHHHhcC
Q 005960 593 TASREELVELKGIGQRLADYICELRQSS 620 (667)
Q Consensus 593 tA~~~eL~~lpGIG~~~A~~Ii~~R~~~ 620 (667)
..+.++|..+||+|+|..+.|.+.=++.
T Consensus 34 ~~s~~dLl~~~n~G~KSl~EI~~~L~~~ 61 (72)
T d1lb2b_ 34 QRTEVELLKTPNLGKKSLTEIKDVLASR 61 (72)
T ss_dssp TCCHHHHHHSTTCCHHHHHHHHHHHHHT
T ss_pred hCCHHHHHhCCCCcHhHHHHHHHHHHHc
Confidence 5699999999999999999998775444
No 164
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=32.92 E-value=5.8 Score=43.82 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.4
Q ss_pred CCCCEEEEeeccCCCCCccee
Q 005960 112 HGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 112 ~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|.|-||+.-|.+|||||.+.
T Consensus 120 ~~~~QsIiisGeSGaGKTe~~ 140 (794)
T d2mysa2 120 DRENQSILITGESGAGKTVNT 140 (794)
T ss_dssp HTCCEEEEEEECTTSCHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHH
Confidence 699999999999999999775
No 165
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.85 E-value=16 Score=29.13 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=26.0
Q ss_pred CCCCHHHHhhc-CCCHHHHHHHhcccccccc
Q 005960 621 PVKSLSDLEKI-GLSTKQVYNLFGKAAKGIF 650 (667)
Q Consensus 621 pf~~~~dL~~v-Gi~~~~~~~l~~~~~~~~~ 650 (667)
|..+.+||..+ |||++..++|..-+..|-+
T Consensus 57 ~i~~~~~l~~i~GIGk~i~~kI~Eil~tG~~ 87 (95)
T d1jmsa1 57 PITSMKDTEGIPCLGDKVKSIIEGIIEDGES 87 (95)
T ss_dssp CCCSGGGGTTCSSCCHHHHHHHHHHHHHSSC
T ss_pred ccCCHHHHHhccchhHHHHHHHHHHHHHCCc
Confidence 78999999999 9999999999887766643
No 166
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.73 E-value=5.7 Score=29.53 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=20.4
Q ss_pred CCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 622 VKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 622 f~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
++.+..|.+| ||||+..++|.++=
T Consensus 4 ~~~l~~f~~I~GvGp~~A~~l~~~G 28 (60)
T d1jmsa3 4 YKSFKLFTSVFGVGLKTAEKWFRMG 28 (60)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHTT
T ss_pred hHHHHHHhccccccHHHHHHHHHhC
Confidence 4567889999 99999999998763
No 167
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=32.70 E-value=17 Score=26.43 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 609 LADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 609 ~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
++++|-+.|+++++ +.+||.+. |++...+.+|....
T Consensus 4 ig~rik~~R~~~g~-tq~~lA~~~gvs~~~i~~~e~g~ 40 (66)
T d2r1jl1 4 MGERIRARRKKLKI-RQAALGKMVGVSNVAISQWERSE 40 (66)
T ss_dssp HHHHHHHHHHHHTC-CHHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHCCCHHHHHHHHcCC
Confidence 56778888888888 78889887 99999998887653
No 168
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=32.43 E-value=6.3 Score=43.04 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=19.6
Q ss_pred CCCCEEEEeeccCCCCCccee
Q 005960 112 HGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 112 ~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|.|.||+.-|.+|||||.+.
T Consensus 91 ~~~~Q~IiisGeSGsGKTe~~ 111 (730)
T d1w7ja2 91 DERNQSIIVSGESGAGKTVSA 111 (730)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCeEEEEEeCCCCCHHHHH
Confidence 589999999999999999986
No 169
>d1z3eb1 a.60.3.1 (B:245-311) C-terminal domain of RNA polymerase alpha subunit {Bacillus subtilis [TaxId: 1423]}
Probab=32.24 E-value=21 Score=26.79 Aligned_cols=33 Identities=9% Similarity=0.294 Sum_probs=25.9
Q ss_pred ccccCcccCHHHHhcCCCCCHHHHHHHHHHHhc
Q 005960 587 YIDFLNTASREELVELKGIGQRLADYICELRQS 619 (667)
Q Consensus 587 ~~v~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~ 619 (667)
..-++-.-+.++|..+|++|++..+.|.+.=.+
T Consensus 29 tv~dL~~~s~~dLl~~~nfG~kSl~EIk~~L~~ 61 (67)
T d1z3eb1 29 TVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE 61 (67)
T ss_dssp BHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHCCHHHHHhCCCCchhhHHHHHHHHHH
Confidence 344555778999999999999999998776433
No 170
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=31.56 E-value=7.3 Score=34.50 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=19.6
Q ss_pred chhhhhcC-C--CCEEEEeeccCCCCCcce
Q 005960 105 PLIPGIFH-G--RNATVFAYGATGSGKTYT 131 (667)
Q Consensus 105 plV~~vl~-G--~N~tIfaYGqTGSGKTyT 131 (667)
+-+|.++. | ....+.-||.+|+|||..
T Consensus 13 ~~LD~~l~GGi~~G~~~~I~G~~G~GKT~l 42 (242)
T d1tf7a1 13 EGFDDISHGGLPIGRSTLVSGTSGTGKTLF 42 (242)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHH
T ss_pred HHHHHhhcCCCcCCeEEEEEeCCCCCHHHH
Confidence 44667776 3 345677889999999964
No 171
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=31.48 E-value=21 Score=24.89 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcC---CCCCHHHHhhc-CCCHHHHHHHhccccc
Q 005960 608 RLADYICELRQSS---PVKSLSDLEKI-GLSTKQVYNLFGKAAK 647 (667)
Q Consensus 608 ~~A~~Ii~~R~~~---pf~~~~dL~~v-Gi~~~~~~~l~~~~~~ 647 (667)
.+.++|++|=+++ | -+++||.+. |+++..+.++..+.+.
T Consensus 3 ~ii~~i~~yi~~~~~~~-itl~~lA~~~~~S~~~l~r~Fk~~~g 45 (54)
T d1d5ya1 3 GIIRDLLIWLEGHLDQP-LSLDNVAAKAGYSKWHLQRMFKDVTG 45 (54)
T ss_dssp HHHHHHHHHHHTTSSSS-CCCHHHHTTTSSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccCCC-CCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 4567888888877 6 689999998 9999999999988764
No 172
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=31.43 E-value=6.9 Score=35.45 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=20.6
Q ss_pred chhhhhcCCC-CEEEEeeccCCCCCcceec
Q 005960 105 PLIPGIFHGR-NATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 105 plV~~vl~G~-N~tIfaYGqTGSGKTyTm~ 133 (667)
.++..+-.|. .-+++-||+.|+|||.+..
T Consensus 13 ~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~ 42 (207)
T d1a5ta2 13 KLVASYQAGRGHHALLIQALPGMGDDALIY 42 (207)
T ss_dssp HHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHcCCcCeEEEEECCCCCcHHHHHH
Confidence 4444445554 5568889999999998653
No 173
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]}
Probab=30.83 E-value=28 Score=31.77 Aligned_cols=57 Identities=14% Similarity=0.243 Sum_probs=38.4
Q ss_pred ccCcccCHHHHhc-CCCCC-HHHHHHHHHHHh-------cCCCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 589 DFLNTASREELVE-LKGIG-QRLADYICELRQ-------SSPVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 589 v~iNtA~~~eL~~-lpGIG-~~~A~~Ii~~R~-------~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
-.+-.|+.++|.. +.|+| ..+|.+|++.=+ -.-=.+.++|.++ |||+++..-+....
T Consensus 63 ~~la~a~~~~l~~~i~~~g~~~ka~~l~~~~~~i~~~~~g~vp~~~~~L~~LpGVG~kTA~~il~~a 129 (224)
T d1kg2a_ 63 TDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLS 129 (224)
T ss_dssp HHHHHSCHHHHHHHHTTSCCTHHHHHHHHHHHHHHHHSTTSCCCSHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhHhhhhhHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHhhhhhhhHHHHHHh
Confidence 4555788888855 68888 445554443322 1233678999999 99999988876543
No 174
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=30.75 E-value=6.9 Score=36.57 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=13.6
Q ss_pred CCCCEEEEeeccCCCCCccee
Q 005960 112 HGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 112 ~G~N~tIfaYGqTGSGKTyTm 132 (667)
.|.+ ++.-++||||||+.+
T Consensus 8 ~~~~--~lv~~~TGsGKT~~~ 26 (305)
T d2bmfa2 8 KKRL--TIMDLHPGAGKTKRY 26 (305)
T ss_dssp TTCE--EEECCCTTSSTTTTH
T ss_pred cCCc--EEEEECCCCCHHHHH
Confidence 3444 355699999999754
No 175
>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.74 E-value=23 Score=33.23 Aligned_cols=40 Identities=28% Similarity=0.476 Sum_probs=28.3
Q ss_pred HHhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHHhc
Q 005960 598 ELVELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFG 643 (667)
Q Consensus 598 eL~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~~ 643 (667)
.|..|||||+++++++ +..+.+++.||.+. +.+.+.+..+
T Consensus 209 pv~~l~GiG~~~~~~L----~~~GI~ti~dl~~~--~~~~L~~~fG 248 (273)
T d1zeta2 209 HIKEIPGIGYKTAKCL----EALGINSVRDLQTF--SPKILEKELG 248 (273)
T ss_dssp SGGGSTTCCHHHHHHH----HTTTCCSHHHHHHS--CHHHHHHHHH
T ss_pred chHHhcCCCHHHHHHH----HHhCCCcHHHHhcC--CHHHHHHHHC
Confidence 4578999999999765 22389999999875 3444544443
No 176
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=30.13 E-value=7.3 Score=35.82 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=14.9
Q ss_pred CEEEEeeccCCCCCccee
Q 005960 115 NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 115 N~tIfaYGqTGSGKTyTm 132 (667)
.-.++-||+.|+|||.+.
T Consensus 34 ~~~~Ll~Gp~G~GKtt~a 51 (239)
T d1njfa_ 34 HHAYLFSGTRGVGKTSIA 51 (239)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CeeEEEECCCCCcHHHHH
Confidence 446889999999999864
No 177
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=30.10 E-value=9.5 Score=34.62 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=19.3
Q ss_pred cchhhhhcCC-CCEEEEeeccCCCCCcce
Q 005960 104 NPLIPGIFHG-RNATVFAYGATGSGKTYT 131 (667)
Q Consensus 104 ~plV~~vl~G-~N~tIfaYGqTGSGKTyT 131 (667)
......-+.| ...+|+-.|.+|||||+.
T Consensus 12 ~~~~r~~~~~~kg~vIwltGlsGsGKTTi 40 (208)
T d1m7ga_ 12 TRSERTELRNQRGLTIWLTGLSASGKSTL 40 (208)
T ss_dssp CHHHHHHHHTSSCEEEEEECSTTSSHHHH
T ss_pred CHHHHHHHhCCCCeEEEEECCCCCCHHHH
Confidence 3333333434 567899999999999963
No 178
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=29.90 E-value=26 Score=25.27 Aligned_cols=35 Identities=11% Similarity=0.200 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhcc
Q 005960 609 LADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGK 644 (667)
Q Consensus 609 ~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~ 644 (667)
++++|-+.|++..+ +.+||.+. ||+...+.+|...
T Consensus 4 i~~rlr~~R~~~gl-tq~~lA~~~gvs~~ti~~~E~g 39 (65)
T d2croa_ 4 LSERLKKRRIALKM-TQTELATKAGVKQQSIQLIEAG 39 (65)
T ss_dssp HHHHHHHHHHHTTC-CHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHCcCHhHHHHHHCC
Confidence 56777778887777 58888886 8888888887653
No 179
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.51 E-value=7.2 Score=34.13 Aligned_cols=14 Identities=43% Similarity=0.767 Sum_probs=12.2
Q ss_pred EEeeccCCCCCcce
Q 005960 118 VFAYGATGSGKTYT 131 (667)
Q Consensus 118 IfaYGqTGSGKTyT 131 (667)
|+-.|+.|||||.-
T Consensus 4 I~i~GppGSGKsT~ 17 (194)
T d1teva_ 4 VFVLGGPGAGKGTQ 17 (194)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999864
No 180
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=29.51 E-value=8.1 Score=42.00 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=20.3
Q ss_pred CCCCEEEEeeccCCCCCcceec
Q 005960 112 HGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 112 ~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
.+.|-||+.-|.+|||||.+..
T Consensus 88 ~~~~Q~IiisGeSGaGKTe~~k 109 (710)
T d1br2a2 88 DREDQSILCTGESGAGKTENTK 109 (710)
T ss_dssp HTCCEEEEEECSTTSSHHHHHH
T ss_pred hCCCcEEEEEeCCCCCHHHHHH
Confidence 5899999999999999999974
No 181
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=29.44 E-value=7.6 Score=37.71 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=14.3
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
+.++-.|+||+|||+..
T Consensus 53 ~~~lf~Gp~GvGKT~la 69 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVT 69 (315)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCcchhHHHH
Confidence 46777899999999975
No 182
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=29.26 E-value=7.4 Score=37.88 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.2
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
++++-+|+||+|||++.
T Consensus 54 ~~~lf~Gp~G~GKt~la 70 (315)
T d1qvra3 54 GSFLFLGPTGVGKTELA 70 (315)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCcchHHHHH
Confidence 46777799999999974
No 183
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}
Probab=28.97 E-value=8.4 Score=41.70 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.1
Q ss_pred CCCCEEEEeeccCCCCCcceec
Q 005960 112 HGRNATVFAYGATGSGKTYTMQ 133 (667)
Q Consensus 112 ~G~N~tIfaYGqTGSGKTyTm~ 133 (667)
.+.|-||+.-|.+|||||.+..
T Consensus 83 ~~~~QsIiisGeSGsGKTe~~k 104 (684)
T d1lkxa_ 83 SQENQCVIISGESGAGKTEASK 104 (684)
T ss_dssp HCCCEEEEEECSTTSSHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHH
Confidence 5889999999999999999874
No 184
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}
Probab=28.94 E-value=6 Score=33.42 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=13.5
Q ss_pred EEEeeccCCCCCccee
Q 005960 117 TVFAYGATGSGKTYTM 132 (667)
Q Consensus 117 tIfaYGqTGSGKTyTm 132 (667)
-|+-.|++|||||...
T Consensus 9 ~I~i~G~~GsGKTTla 24 (192)
T d1lw7a2 9 TVAILGGESSGKSVLV 24 (192)
T ss_dssp EEEEECCTTSHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999864
No 185
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]}
Probab=28.89 E-value=17 Score=33.43 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=38.5
Q ss_pred cCcccCHHHHhc-CCCCC--HHHHHHHHHHHhcC--CC---------CCHHHHhhc-CCCHHHHHHHhcc
Q 005960 590 FLNTASREELVE-LKGIG--QRLADYICELRQSS--PV---------KSLSDLEKI-GLSTKQVYNLFGK 644 (667)
Q Consensus 590 ~iNtA~~~eL~~-lpGIG--~~~A~~Ii~~R~~~--pf---------~~~~dL~~v-Gi~~~~~~~l~~~ 644 (667)
.|-.|+.++|.. |.++| ..+|.+|.+.-+.. .| ...++|..+ |||+++..-+.-.
T Consensus 70 ~la~a~~eel~~~ir~~G~~~~KA~~i~~~a~~i~~~~~~~~~~~~~~~~~~L~~lpGIG~kTA~~vl~~ 139 (217)
T d1pu6a_ 70 KIAYIEFSKLAECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCY 139 (217)
T ss_dssp HHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHSSHHHHHHHCCHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHhhhhcccCCcHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 345789999965 56666 56888886633321 33 456789999 9999999887644
No 186
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=28.52 E-value=7.7 Score=34.17 Aligned_cols=15 Identities=40% Similarity=0.696 Sum_probs=12.9
Q ss_pred EEEeeccCCCCCcce
Q 005960 117 TVFAYGATGSGKTYT 131 (667)
Q Consensus 117 tIfaYGqTGSGKTyT 131 (667)
.|+-.|+.||||+..
T Consensus 10 iI~l~G~pGSGKsT~ 24 (194)
T d3adka_ 10 IIFVVGGPGSGKGTQ 24 (194)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999874
No 187
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=27.88 E-value=8.1 Score=33.20 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=12.2
Q ss_pred EEeeccCCCCCcce
Q 005960 118 VFAYGATGSGKTYT 131 (667)
Q Consensus 118 IfaYGqTGSGKTyT 131 (667)
|+-.|+.|||||.-
T Consensus 3 I~i~G~pGSGKsT~ 16 (182)
T d1zina1 3 LVLMGLPGAGKGTQ 16 (182)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67799999999874
No 188
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.78 E-value=27 Score=27.69 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHh
Q 005960 605 IGQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLF 642 (667)
Q Consensus 605 IG~~~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~ 642 (667)
++.+....|...| | +++++|.+| |+|++.+++.=
T Consensus 38 ~~d~~L~~ia~~~---P-~t~~eL~~I~G~g~~k~~kyG 72 (94)
T d2e1fa1 38 ATNKILVDMAKMR---P-TTVENVKRIDGVSEGKAAMLA 72 (94)
T ss_dssp CCHHHHHHHHHHC---C-CSHHHHTTSTTCCHHHHHHTH
T ss_pred eCHHHHHHHHHcC---C-CCHHHHcCCCCCCHHHHHHHH
Confidence 3566677777777 5 589999999 99999988764
No 189
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=27.78 E-value=8.1 Score=33.49 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=11.6
Q ss_pred EEeeccCCCCCcce
Q 005960 118 VFAYGATGSGKTYT 131 (667)
Q Consensus 118 IfaYGqTGSGKTyT 131 (667)
|+-.|+.|||||+-
T Consensus 3 I~i~G~pGsGKsT~ 16 (181)
T d2cdna1 3 VLLLGPPGAGKGTQ 16 (181)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56679999999874
No 190
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}
Probab=27.48 E-value=8 Score=36.75 Aligned_cols=30 Identities=27% Similarity=0.214 Sum_probs=22.7
Q ss_pred ccchhhhhcC-C---CCEEEEeeccCCCCCccee
Q 005960 103 VNPLIPGIFH-G---RNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 103 v~plV~~vl~-G---~N~tIfaYGqTGSGKTyTm 132 (667)
..+-+|.+|. | ....+.-||+.|||||+.+
T Consensus 38 G~~~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~ 71 (263)
T d1u94a1 38 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLT 71 (263)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHH
T ss_pred CCHHHHHHhcCCCccCceEEEEecCCCcHHHHHH
Confidence 4456677774 4 3467888999999999975
No 191
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=27.47 E-value=11 Score=29.93 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=18.3
Q ss_pred cCHHHHhcCCCCCHHHHHHHH
Q 005960 594 ASREELVELKGIGQRLADYIC 614 (667)
Q Consensus 594 A~~~eL~~lpGIG~~~A~~Ii 614 (667)
-+.++|..++|||++.-++|-
T Consensus 62 ~s~edL~~v~gi~~k~~e~i~ 82 (90)
T d3bzka1 62 RTRDELKKVSRLGEKTFEQAA 82 (90)
T ss_dssp SSSGGGGGSTTCCHHHHHHHH
T ss_pred CCHHHHhhCCCCCHHHHHHhc
Confidence 467999999999999998774
No 192
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.04 E-value=16 Score=26.68 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=18.5
Q ss_pred CHHHHhhc-CCCHHHHHHHhccc
Q 005960 624 SLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 624 ~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
.+..|.+| ||||+..++|.++=
T Consensus 5 ~l~~l~~I~GvGp~~A~~l~~~G 27 (57)
T d2fmpa2 5 SINFLTRVSGIGPSAARKFVDEG 27 (57)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHTT
T ss_pred HHHHHhccccccHHHHHHHHHhC
Confidence 46778999 99999999997763
No 193
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}
Probab=27.04 E-value=8.5 Score=33.43 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=11.9
Q ss_pred EEeeccCCCCCcce
Q 005960 118 VFAYGATGSGKTYT 131 (667)
Q Consensus 118 IfaYGqTGSGKTyT 131 (667)
|+-.|+.|||||..
T Consensus 3 I~i~G~pGSGKsT~ 16 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQ 16 (182)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 66789999999874
No 194
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}
Probab=26.72 E-value=7.8 Score=33.40 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=0.0
Q ss_pred EEEeeccCCCCCcc
Q 005960 117 TVFAYGATGSGKTY 130 (667)
Q Consensus 117 tIfaYGqTGSGKTy 130 (667)
+|+-.|..|||||+
T Consensus 4 ~Iil~G~~GsGKST 17 (170)
T d1e6ca_ 4 PIFMVGARGCGMTT 17 (170)
T ss_dssp CEEEESCTTSSHHH
T ss_pred CEEEECCCCCCHHH
No 195
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}
Probab=26.54 E-value=7.4 Score=36.01 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=18.2
Q ss_pred hhhhhcCCCCEEEEeeccCCCCCccee
Q 005960 106 LIPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 106 lV~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
+|+.++.| .. .+-||++|+|||+.+
T Consensus 22 li~G~~pg-~~-~~i~G~~G~GKS~l~ 46 (274)
T d1nlfa_ 22 VLPNMVAG-TV-GALVSPGGAGKSMLA 46 (274)
T ss_dssp EETTEETT-SE-EEEEESTTSSHHHHH
T ss_pred HhCCccCC-cE-EEEEeCCCCCHHHHH
Confidence 45566666 34 446999999999865
No 196
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Probab=26.54 E-value=7.3 Score=38.83 Aligned_cols=18 Identities=39% Similarity=0.654 Sum_probs=14.9
Q ss_pred CCEEEEeeccCCCCCcce
Q 005960 114 RNATVFAYGATGSGKTYT 131 (667)
Q Consensus 114 ~N~tIfaYGqTGSGKTyT 131 (667)
--+.|+..|+||.|||..
T Consensus 67 p~~niLfiGPTGvGKTEl 84 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLM 84 (364)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCcceeeeCCCCccHHHH
Confidence 345688899999999985
No 197
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}
Probab=25.87 E-value=7.9 Score=33.16 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=14.7
Q ss_pred EEEEeeccCCCCCccee
Q 005960 116 ATVFAYGATGSGKTYTM 132 (667)
Q Consensus 116 ~tIfaYGqTGSGKTyTm 132 (667)
+||...|.+|+|||..+
T Consensus 1 a~V~liG~~n~GKSsLi 17 (171)
T d1mkya1 1 ATVLIVGRPNVGKSTLF 17 (171)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 58999999999999754
No 198
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}
Probab=25.14 E-value=9 Score=33.10 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=11.5
Q ss_pred EEeeccCCCCCcce
Q 005960 118 VFAYGATGSGKTYT 131 (667)
Q Consensus 118 IfaYGqTGSGKTyT 131 (667)
|+-.|+.|||||.-
T Consensus 3 I~i~G~pGSGKsT~ 16 (179)
T d1e4va1 3 IILLGAPVAGKGTQ 16 (179)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45689999999874
No 199
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}
Probab=24.94 E-value=20 Score=32.82 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=36.8
Q ss_pred cCcccCHHHHhc-CCCCC-HHHHHHHHHHHh------cCCC-CCHHHHhhc-CCCHHHHHHHhccc
Q 005960 590 FLNTASREELVE-LKGIG-QRLADYICELRQ------SSPV-KSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 590 ~iNtA~~~eL~~-lpGIG-~~~A~~Ii~~R~------~~pf-~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
.+-.|+.++|.. +.|+| ..+|.++++.-. ...+ .+.++|..+ |||+++..-+....
T Consensus 62 ~la~a~~~~l~~~i~~~G~~~ra~~l~~~~~~~~~~~~G~vp~~~~~Ll~LpGIG~kTA~~il~~a 127 (221)
T d1rrqa1 62 ALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLA 127 (221)
T ss_dssp HHHHSCHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHhhcHHHHHhhhccchhhhhhHHHHHHHHHHhhhcCCCCchHHHHHHHHHHhhhHHHHHHHHHH
Confidence 445778888754 68888 444444443221 1122 478999999 99999988877544
No 200
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]}
Probab=24.26 E-value=23 Score=31.37 Aligned_cols=54 Identities=17% Similarity=0.256 Sum_probs=37.9
Q ss_pred cCcccCHHHHhcCCCCCHHHHHHHHHHHhcC---CC-----CC----HHHHhhc-CCCHHHHHHHhcc
Q 005960 590 FLNTASREELVELKGIGQRLADYICELRQSS---PV-----KS----LSDLEKI-GLSTKQVYNLFGK 644 (667)
Q Consensus 590 ~iNtA~~~eL~~lpGIG~~~A~~Ii~~R~~~---pf-----~~----~~dL~~v-Gi~~~~~~~l~~~ 644 (667)
.|-.++.++|..+ |++..+|+.|++.-+.. .+ .+ .+.|.++ |||+.+.+-+.-+
T Consensus 61 ~l~~~~~~~lr~~-Gls~~Ka~~i~~~a~~~~~g~l~~~~~~~~~e~~~~L~~l~GIGpwTAd~illf 127 (183)
T d1mpga1 61 RLAAADPQALKAL-GMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRWTANYFALR 127 (183)
T ss_dssp HHHTCCHHHHHHT-TSCHHHHHHHHHHHHHHHHTCSCSSCCSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHc-CCcHHHHHHHHHHHHHHHcCchhhhccccHHHHHHHHHHhhcccHHHHHHHHHh
Confidence 3445678899888 99988988888765421 11 22 3567778 9999999876543
No 201
>d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]}
Probab=23.83 E-value=40 Score=23.94 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhc
Q 005960 610 ADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFG 643 (667)
Q Consensus 610 A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~ 643 (667)
+++|-+.|+++.+ +.+||.+. ||+...+.+|..
T Consensus 3 g~rik~~R~~~g~-sq~elA~~~gvs~~~is~~E~ 36 (63)
T d1r69a_ 3 SSRVKSKRIQLGL-NQAELAQKVGTTQQSIEQLEN 36 (63)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHcCC-cHHHHHHHhCcCHHHHHHHHC
Confidence 4555556666655 45556665 666666666654
No 202
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.70 E-value=11 Score=32.78 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=12.0
Q ss_pred EEeeccCCCCCccee
Q 005960 118 VFAYGATGSGKTYTM 132 (667)
Q Consensus 118 IfaYGqTGSGKTyTm 132 (667)
|+-.|+.|||||...
T Consensus 5 Ivl~G~pGSGKtT~a 19 (180)
T d1akya1 5 MVLIGPPGAGKGTQA 19 (180)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999998753
No 203
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=23.42 E-value=8.6 Score=39.74 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=13.1
Q ss_pred EEeeccCCCCCcceecc
Q 005960 118 VFAYGATGSGKTYTMQG 134 (667)
Q Consensus 118 IfaYGqTGSGKTyTm~G 134 (667)
++.-|..|||||+||..
T Consensus 27 ~lV~A~AGSGKT~~lv~ 43 (623)
T g1qhh.1 27 LLIMAGAGSGKTRVLTH 43 (623)
T ss_dssp EEEEECTTSCHHHHHHH
T ss_pred EEEEEeCchHHHHHHHH
Confidence 34448899999999853
No 204
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=23.38 E-value=11 Score=33.37 Aligned_cols=14 Identities=43% Similarity=0.513 Sum_probs=11.5
Q ss_pred EEeeccCCCCCcce
Q 005960 118 VFAYGATGSGKTYT 131 (667)
Q Consensus 118 IfaYGqTGSGKTyT 131 (667)
|+-+|+.|||||+.
T Consensus 9 IiliG~PGSGKtT~ 22 (189)
T d2ak3a1 9 AAIMGAPGSGKGTV 22 (189)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 55679999999875
No 205
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=23.16 E-value=11 Score=32.80 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=12.7
Q ss_pred CCCEEEEeeccCCCCCccee
Q 005960 113 GRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 113 G~N~tIfaYGqTGSGKTyTm 132 (667)
|....| .|+.|||||..-
T Consensus 3 ~~riil--~G~pGSGKsT~a 20 (190)
T d1ak2a1 3 GVRAVL--LGPPGAGKGTQA 20 (190)
T ss_dssp CCEEEE--ECCTTSSHHHHH
T ss_pred ccEEEE--ECCCCCCHHHHH
Confidence 444443 699999998753
No 206
>d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.83 E-value=38 Score=25.46 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhccc
Q 005960 606 GQRLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFGKA 645 (667)
Q Consensus 606 G~~~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~~~ 645 (667)
...+.++|-+.|+.+.+ +-+||.+. ||+...+.+|....
T Consensus 4 ~~~iG~~I~~~R~~~gl-tq~~lA~~~gis~~~is~~E~G~ 43 (78)
T d1x57a1 4 TLEVGKVIQQGRQSKGL-TQKDLATKINEKPQVIADYESGR 43 (78)
T ss_dssp CCHHHHHHHHHHHTTTC-CHHHHHHHHTSCHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHcCC-ChhHHHHcCCCCHHHHHHHHccC
Confidence 34667788888888877 77888886 88888888877654
No 207
>d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]}
Probab=22.71 E-value=22 Score=32.72 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=22.1
Q ss_pred HhcCCCCCHHHHHHHHHHHhcCCCCCHHHHhhc
Q 005960 599 LVELKGIGQRLADYICELRQSSPVKSLSDLEKI 631 (667)
Q Consensus 599 L~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~v 631 (667)
|..|||||+++++++ + ..+++++.||.++
T Consensus 180 l~~l~GiG~~~~~~L-~---~~Gi~t~gdl~~~ 208 (240)
T d1jx4a2 180 IADVPGIGNITAEKL-K---KLGINKLVDTLSI 208 (240)
T ss_dssp GGGSTTCCHHHHHHH-H---TTTCCBGGGGGSS
T ss_pred hhhcCCCCHHHHHHH-H---HhCCCcHHHHHcC
Confidence 457899999998875 2 2388888888764
No 208
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.70 E-value=9.8 Score=33.48 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=12.1
Q ss_pred EEeeccCCCCCcce
Q 005960 118 VFAYGATGSGKTYT 131 (667)
Q Consensus 118 IfaYGqTGSGKTyT 131 (667)
|+-.|++|||||..
T Consensus 4 Ivl~GpsG~GK~tl 17 (186)
T d1gkya_ 4 IVISGPSGTGKSTL 17 (186)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999874
No 209
>d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]}
Probab=22.68 E-value=51 Score=24.00 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCCCCHHHHhhc-CCCHHHHHHHhc
Q 005960 608 RLADYICELRQSSPVKSLSDLEKI-GLSTKQVYNLFG 643 (667)
Q Consensus 608 ~~A~~Ii~~R~~~pf~~~~dL~~v-Gi~~~~~~~l~~ 643 (667)
.++.+|.+.|+++.. +.+||.+. ||++..+.+|..
T Consensus 6 ~l~~~i~~~r~~~gl-tq~elA~~~gv~~~~is~ie~ 41 (69)
T d2a6ca1 6 QLLIVLQEHLRNSGL-TQFKAAELLGVTQPRVSDLMR 41 (69)
T ss_dssp HHHHHHHHHHHTTTC-CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHcCHhHHHHHHc
Confidence 466777777777666 45677776 888888877775
No 210
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}
Probab=22.55 E-value=12 Score=32.03 Aligned_cols=13 Identities=38% Similarity=0.567 Sum_probs=0.0
Q ss_pred EEeeccCCCCCcc
Q 005960 118 VFAYGATGSGKTY 130 (667)
Q Consensus 118 IfaYGqTGSGKTy 130 (667)
|+-.|..|||||.
T Consensus 3 I~liG~~GsGKsT 15 (161)
T d1viaa_ 3 IVFIGFMGSGKST 15 (161)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCCCHHH
No 211
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=22.21 E-value=75 Score=21.75 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=35.5
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhcC---CCCCHHHHhhcCCCHHHHHHHhc
Q 005960 596 REELVELKGIGQRLADYICELRQSS---PVKSLSDLEKIGLSTKQVYNLFG 643 (667)
Q Consensus 596 ~~eL~~lpGIG~~~A~~Ii~~R~~~---pf~~~~dL~~vGi~~~~~~~l~~ 643 (667)
...|..|.||...+|+++++.---- .=..+++|.+-|+...++..+++
T Consensus 3 yaslisirgidreraerllkkyggyskvreagveelredgltdaqirelkg 53 (55)
T d2csba4 3 YASLISIRGIDRERAERLLKKYGGYSKVREAGVEELREDGLTDAQIRELKG 53 (55)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTSHHHHHTSCHHHHHHTTCCHHHHHHHHT
T ss_pred ccceeeeecccHHHHHHHHHHhcChhHHHHhhHHHHHHccccHHHHHHhhc
Confidence 4568889999999999998642100 12467888888999888887764
No 212
>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]}
Probab=21.87 E-value=38 Score=25.53 Aligned_cols=39 Identities=31% Similarity=0.471 Sum_probs=28.3
Q ss_pred cCCCCCHHHHHHHHHHHhcCCCCCHHHHhhcCCCHHHHHHHhcc
Q 005960 601 ELKGIGQRLADYICELRQSSPVKSLSDLEKIGLSTKQVYNLFGK 644 (667)
Q Consensus 601 ~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~~vGi~~~~~~~l~~~ 644 (667)
.+.|||..+|..|+..=.-+|.+...+| +.+.+++|.+.
T Consensus 33 ~f~GvGn~~a~Eil~~agi~P~~~~~~L-----~~~e~~~L~~a 71 (78)
T d2hkja1 33 EFQSIGDTTADKILELAGLKPNKKVKNL-----TEEEITRLVET 71 (78)
T ss_dssp HSSSCCHHHHHHHHHHHTCCTTSBGGGC-----CHHHHHHHHHH
T ss_pred HhcccCHHHHHHHHHHhCCCcccccccC-----CHHHHHHHHHH
Confidence 3799999999999986545588777666 44555555443
No 213
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=21.80 E-value=14 Score=33.20 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=17.4
Q ss_pred hhhhcCCCCEEEEeeccCCCCCccee
Q 005960 107 IPGIFHGRNATVFAYGATGSGKTYTM 132 (667)
Q Consensus 107 V~~vl~G~N~tIfaYGqTGSGKTyTm 132 (667)
|..+++|.+ .+++..+||||||...
T Consensus 35 ip~~l~g~~-d~iv~a~TGsGKT~~~ 59 (208)
T d1hv8a1 35 IPLFLNDEY-NIVAQARTGSGKTASF 59 (208)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHHcCCC-Ceeeechhccccccee
Confidence 344566642 3577889999999865
No 214
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}
Probab=20.43 E-value=17 Score=35.59 Aligned_cols=35 Identities=11% Similarity=0.271 Sum_probs=22.0
Q ss_pred ccCCCccceEEEEeCCCChhhhHHH--HHHHHHhhhc
Q 005960 320 SLGGTSHALMVACLNPGEYQESVHT--VSLAARSRHI 354 (667)
Q Consensus 320 sLgGnskt~mIa~vsP~~~~ETlsT--L~fA~rar~I 354 (667)
.+..+...++|+.-+|.++++++-- ++....-+.|
T Consensus 220 g~~~~~~v~viaatN~~~~~~~i~~~~~r~~Rf~~~v 256 (321)
T d1w44a_ 220 AMAASRGCVVIASLNPTSNDDKIVELVKEASRSNSTS 256 (321)
T ss_dssp HHHHHHTCEEEEECCCCCCCHHHHHHHHHHHHHSCSE
T ss_pred ccccCCCeEEEEeCCCcccccchhhhhhccCccccee
Confidence 3444567889999999877777642 3433333443
No 215
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.25 E-value=21 Score=30.37 Aligned_cols=18 Identities=28% Similarity=0.161 Sum_probs=14.5
Q ss_pred CEEEEeeccCCCCCccee
Q 005960 115 NATVFAYGATGSGKTYTM 132 (667)
Q Consensus 115 N~tIfaYGqTGSGKTyTm 132 (667)
-..|--.|.+|||||+..
T Consensus 22 ~~iIgI~G~~GSGKSTla 39 (198)
T d1rz3a_ 22 RLVLGIDGLSRSGKTTLA 39 (198)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 556778999999999853
No 216
>d1ci4a_ a.60.5.1 (A:) Barrier-to-autointegration factor, BAF {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.03 E-value=26 Score=27.71 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=23.6
Q ss_pred HhcCCCCCHHHHHHHHHHHhcCCCCCHHHHh----hcCCCHHHHHHHhc
Q 005960 599 LVELKGIGQRLADYICELRQSSPVKSLSDLE----KIGLSTKQVYNLFG 643 (667)
Q Consensus 599 L~~lpGIG~~~A~~Ii~~R~~~pf~~~~dL~----~vGi~~~~~~~l~~ 643 (667)
...|||||+.++++..+. +|.---.+. -.+-....+..|..
T Consensus 20 V~~l~GIG~~lg~~L~~k----GfdKAy~vLGqfL~l~kde~~F~~Wlk 64 (89)
T d1ci4a_ 20 VGSLAGIGEVLGKKLEER----GFDKAYVVLGQFLVLKKDEDLFREWLK 64 (89)
T ss_dssp GGGSTTCCHHHHHHHHHT----TCCSHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ccccCCccHHHHHHHHHc----CccHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 467999999999875443 554433332 12444455544443
Done!