BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005961
(667 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O0D|A Chain A, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|B Chain B, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|C Chain C, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|D Chain D, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|E Chain E, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|F Chain F, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|G Chain G, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
Length = 301
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 178 IDHKTECFLLLIRGTHSIKDTLTAATGAVVPFHH---------TVVCEGGVSNLVLGYAH 228
+DH ++ L+IRGTHS++D +T P + T C+ + H
Sbjct: 74 VDHASKQIYLVIRGTHSLEDVITDIRIMQAPLTNFDLAANISSTATCDDCL-------VH 126
Query: 229 CGMVAAARWIAKLSTPCLIEALDKYPGYKLKIVGHSLGGGTAALLTYVLR 278
G + + P L +++YP Y++ + GHSLGG A L L+
Sbjct: 127 NGFIQSYNNTYNQIGPKLDSVIEQYPDYQIAVTGHSLGGAAALLFGINLK 176
>pdb|1TIA|A Chain A, An Unusual Buried Polar Cluster In A Family Of Fungal
Lipases
Length = 279
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 17/145 (11%)
Query: 169 ILKPAFTILIDHKTECFLLLIRGTHSIKDTLTAATGAVVPFHHTV--VCEGGVSNLVLGY 226
I A I +DH +L RG++S+++ + AT F HT +C+G ++ L
Sbjct: 60 ITDTAGYIAVDHTNSAVVLAFRGSYSVRNWVADAT-----FVHTNPGLCDGCLAEL---- 110
Query: 227 AHCGMVAAARWIAKLSTPCLIEALDKYPGYKLKIVGHSLGGGTAALLTYVLRERKELSTA 286
G ++ + + L E + + P Y+L +VGHSLG A L LR + S
Sbjct: 111 ---GFWSSWKLVRDDIIKELKEVVAQNPNYELVVVGHSLGAAVATLAATDLRGKGYPSAK 167
Query: 287 TCVTFAP---GACMTWELAESGNDF 308
+P A + + GN+F
Sbjct: 168 LYAYASPRVGNAALAKYITAQGNNF 192
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 20/188 (10%)
Query: 187 LLIRGTHSIKDTLTAATGAVVPFHHTVVCEGGVSNLVLGYAHCGMVAAARWIAKLSTPCL 246
++ RG+ SI++ + T VP + V V H G + + + +
Sbjct: 77 IVFRGSSSIRNWIADLT--FVPVSYPPVSGTKV--------HKGFLDSYGEVQNELVATV 126
Query: 247 IEALDKYPGYKLKIVGHSLGGGTAALLTYVLRERKE-LSTATCVTFAPGACMTWELAESG 305
++ +YP YK+ + GHSLGG TA L L +R+E LS++ + G A +
Sbjct: 127 LDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLFLYTQGQPRVGNPAFAN 186
Query: 306 NDFITSV-----INGADLVPTFSAASVDDLRAEVTASAWLNDLRNQIERTRILSTVYRSA 360
T + +N D+VP A+ L A + W+ D N E ++ ++ ++
Sbjct: 187 YVVSTGIPYRRTVNERDIVPHLPPAAFGFLHAG--SEYWITD--NSPETVQVCTSDLETS 242
Query: 361 SALGSHLP 368
S +P
Sbjct: 243 DCSNSIVP 250
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 20/188 (10%)
Query: 187 LLIRGTHSIKDTLTAATGAVVPFHHTVVCEGGVSNLVLGYAHCGMVAAARWIAKLSTPCL 246
++ RG+ SI++ + T VP + V V H G + + + +
Sbjct: 77 IVFRGSSSIRNWIADLT--FVPVSYPPVSGTKV--------HKGFLDSYGEVQNELVATV 126
Query: 247 IEALDKYPGYKLKIVGHSLGGGTAALLTYVLRERKE-LSTATCVTFAPGACMTWELAESG 305
++ +YP YK+ + GHSLGG TA L L +R+E LS++ + G A +
Sbjct: 127 LDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLFLYTQGQPRVGNPAFAN 186
Query: 306 NDFITSV-----INGADLVPTFSAASVDDLRAEVTASAWLNDLRNQIERTRILSTVYRSA 360
T + +N D+VP A+ L A + W+ D N E ++ ++ ++
Sbjct: 187 YVVSTGIPYRRTVNERDIVPHLPPAAFGFLHAG--SEYWITD--NSPETVQVCTSDLETS 242
Query: 361 SALGSHLP 368
S +P
Sbjct: 243 DCSNSIVP 250
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 20/188 (10%)
Query: 187 LLIRGTHSIKDTLTAATGAVVPFHHTVVCEGGVSNLVLGYAHCGMVAAARWIAKLSTPCL 246
++ RG+ SI++ + T VP + V V H G + + + +
Sbjct: 77 IVFRGSSSIRNWIADLT--FVPVSYPPVSGTKV--------HKGFLDSYGEVQNELVATV 126
Query: 247 IEALDKYPGYKLKIVGHSLGGGTAALLTYVLRERKE-LSTATCVTFAPGACMTWELAESG 305
++ +YP YK+ + GHSLGG TA L L +R+E LS++ + G A +
Sbjct: 127 LDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLFLYTQGQPRVGNPAFAN 186
Query: 306 NDFITSV-----INGADLVPTFSAASVDDLRAEVTASAWLNDLRNQIERTRILSTVYRSA 360
T + +N D+VP A+ L A + W+ D N E ++ ++ ++
Sbjct: 187 YVVSTGIPYRRTVNERDIVPHLPPAAFGFLHAG--SEYWITD--NSPETVQVCTSDLETS 242
Query: 361 SALGSHLP 368
S +P
Sbjct: 243 DCSNSIVP 250
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 176 ILIDHKTECFLLLIRGTHSIKDTLTAATGAVVPFHHTVVCEGGVSNLVLGYAHCGMVAAA 235
+L K + L+ RGT+S + +A T V F +G H G +++
Sbjct: 67 VLRSDKQKTIYLVFRGTNSFR---SAITDIVFNFSDYKPVKGA-------KVHAGFLSSY 116
Query: 236 RWIAKLSTPCLIEALDKYPGYKLKIVGHSLGGGTAALLTYVLRERK 281
+ P + E L +P YK+ + GHSLGG A L L +R+
Sbjct: 117 EQVVNDYFPVVQEQLTAHPTYKVIVTGHSLGGAQALLAGMDLYQRE 162
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 20/188 (10%)
Query: 187 LLIRGTHSIKDTLTAATGAVVPFHHTVVCEGGVSNLVLGYAHCGMVAAARWIAKLSTPCL 246
++ RG+ SI++ + T VP + V V H G + + + +
Sbjct: 77 IVFRGSSSIRNWIADLT--FVPVSYPPVSGTKV--------HKGFLDSYGEVQNELVATV 126
Query: 247 IEALDKYPGYKLKIVGHSLGGGTAALLTYVLRERKE-LSTATCVTFAPGACMTWELAESG 305
++ +YP YK+ + GHSLGG T L L +R+E LS++ + G + A +
Sbjct: 127 LDQFKQYPSYKVAVTGHSLGGATVLLCALDLYQREEGLSSSNLFLYTQGQPRVGDPAFAN 186
Query: 306 NDFITSV-----INGADLVPTFSAASVDDLRAEVTASAWLNDLRNQIERTRILSTVYRSA 360
T + +N D+VP A+ L A W+ D N E ++ ++ ++
Sbjct: 187 YVVSTGIPYRRTVNERDIVPHLPPAAFGFLHAG--EEYWITD--NSPETVQVCTSDLETS 242
Query: 361 SALGSHLP 368
S +P
Sbjct: 243 DCSNSIVP 250
>pdb|1USW|A Chain A, Crystal Structure Of Ferulic Acid Esterase From
Aspergillus Niger
Length = 260
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 176 ILIDHKTECFLLLIRGTHSIKDTLTAATGAVVPFHHTVVCEGGVSNLVLGYAHCGMVAAA 235
IL D ++ + + RGT S + + PF C V G + G ++
Sbjct: 52 ILRDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQCN---DCEVHGGYYIGWISVQ 108
Query: 236 RWIAKLSTPCLIEALDKYPGYKLKIVGHSLGGGTAAL 272
+ L + + +YP Y L + GHSLG AAL
Sbjct: 109 DQVESL----VKQQASQYPDYALTVTGHSLGASMAAL 141
>pdb|2HL6|A Chain A, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2HL6|B Chain B, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2IX9|A Chain A, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
pdb|2IX9|B Chain B, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
Length = 260
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 176 ILIDHKTECFLLLIRGTHSIKDTLTAATGAVVPFHHTVVCEGGVSNLVLGYAHCGMVAAA 235
IL D ++ + + RGT S + + PF C V G + G ++
Sbjct: 52 ILRDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQCN---DCEVHGGYYIGWISVQ 108
Query: 236 RWIAKLSTPCLIEALDKYPGYKLKIVGHSLGGGTAAL 272
+ L + + +YP Y L + GHSLG AAL
Sbjct: 109 DQVESL----VKQQASQYPDYALTVTGHSLGASMAAL 141
>pdb|1UWC|A Chain A, Feruloyl Esterase From Aspergillus Niger
pdb|1UWC|B Chain B, Feruloyl Esterase From Aspergillus Niger
pdb|1UZA|A Chain A, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
pdb|1UZA|B Chain B, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
Length = 261
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 176 ILIDHKTECFLLLIRGTHSIKDTLTAATGAVVPFHHTVVCEGGVSNLVLGYAHCGMVAAA 235
IL D ++ + + RGT S + + PF C V G + G ++
Sbjct: 52 ILRDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQCN---DCEVHGGYYIGWISVQ 108
Query: 236 RWIAKLSTPCLIEALDKYPGYKLKIVGHSLGGGTAAL 272
+ L + + +YP Y L + GHSLG AAL
Sbjct: 109 DQVESL----VKQQASQYPDYALTVTGHSLGASMAAL 141
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 176 ILIDHKTECFLLLIRGTHSIKDTLTAATGAVVPFHHTVVCEGGVSNLVLGYAHCGMVAAA 235
+ +D+ + +L RG+ SI++ + + + +C G H G ++
Sbjct: 67 LALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEIND--ICSGC-------RGHDGFTSSW 117
Query: 236 RWIAKLSTPCLIEALDKYPGYKLKIVGHSLGGGTAALLTYVLR 278
R +A + +A+ ++P Y++ GHSLGG A + LR
Sbjct: 118 RSVADTLRQKVEDAVREHPDYRVVFTGHSLGGALATVAGADLR 160
>pdb|2BJH|A Chain A, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|B Chain B, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|C Chain C, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
Length = 260
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Query: 176 ILIDHKTECFLLLIRGTHSIKDTLTAATGAVVPFHHTVVCEGGVSNLVLGYAHCGMVAAA 235
IL D ++ + + RGT S + + PF C V G + G ++
Sbjct: 52 ILRDDTSKEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQCN---DCEVHGGYYIGWISVQ 108
Query: 236 RWIAKLSTPCLIEALDKYPGYKLKIVGHSLGGGTAAL 272
+ L + + +YP Y L + GH+LG AAL
Sbjct: 109 DQVESL----VKQQASQYPDYALTVTGHALGASMAAL 141
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 176 ILIDHKTECFLLLIRGTHSIKDTLTAATGAVVPFHHTVVCEGGVSNLVLGYAHCGMVAAA 235
+ +D+ + +L RG+ SI++ + + + +C G H G ++
Sbjct: 67 LALDNTNKLIVLSFRGSRSIENWIGNLNFDLKEIND--ICSGC-------RGHDGFTSSW 117
Query: 236 RWIAKLSTPCLIEALDKYPGYKLKIVGHSLGGGTAALLTYVLR 278
R +A + +A+ ++P Y++ GH+LGG A + LR
Sbjct: 118 RSVADTLRQKVEDAVREHPDYRVVFTGHALGGALATVAGADLR 160
>pdb|3G7N|A Chain A, Crystal Structure Of A Triacylglycerol Lipase From
Penicillium Expansum At 1.3
pdb|3G7N|B Chain B, Crystal Structure Of A Triacylglycerol Lipase From
Penicillium Expansum At 1.3
Length = 258
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 250 LDKYPGYKLKIVGHSLGGGTAALLTYVLRER 280
+ KYP Y L+ VGHSLGG ++ L +
Sbjct: 118 IAKYPDYTLEAVGHSLGGALTSIAHVALAQN 148
>pdb|2HIH|A Chain A, Crystal Structure Of Staphylococcus Hyicus Lipase
pdb|2HIH|B Chain B, Crystal Structure Of Staphylococcus Hyicus Lipase
Length = 431
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 254 PGYKLKIVGHSLGGGTAALLTYVLR 278
PG+ + +GHS+GG T LL + LR
Sbjct: 149 PGHPVHFIGHSMGGQTIRLLEHYLR 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,434,718
Number of Sequences: 62578
Number of extensions: 574074
Number of successful extensions: 1478
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1461
Number of HSP's gapped (non-prelim): 19
length of query: 667
length of database: 14,973,337
effective HSP length: 105
effective length of query: 562
effective length of database: 8,402,647
effective search space: 4722287614
effective search space used: 4722287614
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)