Query 005962
Match_columns 667
No_of_seqs 220 out of 655
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 16:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02305 lipoxygenase 100.0 1E-185 2E-190 1569.3 53.0 614 48-667 299-918 (918)
2 PLN02264 lipoxygenase 100.0 3E-183 7E-188 1549.4 50.4 612 48-667 303-919 (919)
3 PLN02337 lipoxygenase 100.0 3E-180 7E-185 1530.6 53.0 613 48-667 242-866 (866)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 9E-169 2E-173 1435.8 33.3 626 14-651 3-667 (667)
5 PF10474 DUF2451: Protein of u 33.0 28 0.0006 36.3 2.1 24 449-478 178-201 (234)
6 PF12588 PSDC: Phophatidylseri 26.4 1.1E+02 0.0024 29.6 4.7 49 465-514 11-60 (141)
7 KOG2675 Adenylate cyclase-asso 23.7 2.5E+02 0.0053 32.1 7.3 109 334-489 91-216 (480)
8 PF10281 Ish1: Putative stress 21.1 1.5E+02 0.0033 21.8 3.6 30 468-507 5-35 (38)
9 PF09545 RE_AccI: AccI restric 17.1 8.5E+02 0.018 26.6 9.3 70 443-512 51-135 (366)
10 PF05017 TMP: TMP repeat; Int 14.9 55 0.0012 18.1 0.0 10 445-454 1-10 (11)
No 1
>PLN02305 lipoxygenase
Probab=100.00 E-value=1.1e-185 Score=1569.26 Aligned_cols=614 Identities=56% Similarity=1.006 Sum_probs=584.8
Q ss_pred CCCCCCCCCCC---CCccCCCCCcchhhhhhhhhhHHHHHHhhhhhhhhhhhccCCCCCCCHHHHHHHhhcCCCCCCchh
Q 005962 48 IADPASESRTL---INYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPET 124 (667)
Q Consensus 48 ~~d~~~e~r~~---~~ylPrDe~F~~~K~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~f~sf~di~~Ly~~~~~~~~~~~ 124 (667)
+|||+||||.. .+||||||+|++.|.++|.+.++|+++|.++|.++++++.+..+|+||+||++||++|+++|...
T Consensus 299 ~~Dp~~Esr~~~~~~~YvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~~~- 377 (918)
T PLN02305 299 KKDPLCESRIEKPHPVYVPRDETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKTEE- 377 (918)
T ss_pred CCCCcccccccCCCCcCCCCCCCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCchh-
Confidence 48999999954 47999999999999999999999999999999999999877899999999999999999998410
Q ss_pred hhHHHHHHhhhh-hhhhhccccccccccccCccccccCcccccccHHHHHHHhhCCCccccccccCCCCCCCCCCccCCC
Q 005962 125 FKEKALWRTILP-RLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGP 203 (667)
Q Consensus 125 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~P~~~~~~~~~W~~D~~Fg~Q~L~G~NP~~I~~~~~~P~~~~ld~~~yg~ 203 (667)
.+.+.+..+| .+.+.+.++++.++|||+|+||++|+++|++|+|||||+|||+||++|+||++||++++|||++||+
T Consensus 378 --~~~~~~~p~~~~~~~~i~~~~~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~ 455 (918)
T PLN02305 378 --PKDIGLNPFLGNFMKQVLSVSERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGP 455 (918)
T ss_pred --hhhhhcCCchHHHHHHhhhcccccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCC
Confidence 0112221122 4455557889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHhCCcccHHHHHhcCcEEEeccccccchhhhhcccCCCccccccceEEEecCCCceeeEEEEecCCCC
Q 005962 204 PESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPM 283 (667)
Q Consensus 204 ~~~~vt~~~i~~~l~g~~tl~~al~~grLFi~Dy~~~~lp~~~~in~~~g~~~yA~~~Lffl~~~g~L~PiAIqL~~~~~ 283 (667)
++|+||++||+..|+| +||++||++|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||+++++
T Consensus 456 ~~s~iT~e~ve~~L~G-~TleeAl~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~ 534 (918)
T PLN02305 456 PESALTEELIERELEG-MTVEKAIEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPT 534 (918)
T ss_pred cCCCcCHHHHHhhcCC-CcHHHHHHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCC
Confidence 9999999999999998 999999999999999999999999989999999999999999999999999999999999988
Q ss_pred CCCCCCCceeeCCCCCCCchhHHHHHHHHHhhhhhhhHHHHhhhhhccchhHHHHHHhccCCccCchhhhcccchhhhhc
Q 005962 284 DGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTME 363 (667)
Q Consensus 284 ~~~~~~~~VftP~d~~~~~~~W~LAK~~v~~aD~~~HqlisHll~THlv~Epf~iAt~RqLs~~HPI~kLL~PH~r~tl~ 363 (667)
++++..++||||.++++++|.|+||||||++||+++||+++||++||+|||||||||+||||.+|||||||.||||+||+
T Consensus 535 ~~~p~~~~VftP~~d~~~~w~W~LAK~~V~~aD~~~HQlisHlLrTHlv~EpfiIAT~RqLs~~HPI~kLL~PHfr~TL~ 614 (918)
T PLN02305 535 PSSPGNKFVYTHGHDATTHWIWKLAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPIYKLLHPHMRYTLE 614 (918)
T ss_pred CCCCCcceeeCCCCCCCCchHHHHHHHHHHhccHHHHHHHHHHhhHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHH
Confidence 77666788999977667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHhhcccCCcccccccCCchhHHHHHHHHHhccCCCCCCCCchHHHhcCCCCCCCCCCccccccccCCccchhhHH
Q 005962 364 INALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPFAKDGLD 443 (667)
Q Consensus 364 IN~~AR~~LI~~gG~id~~~~~G~~~~el~~~~y~~~w~f~~~~lP~DL~~RG~~~~D~~~~~g~~~~lp~YpYrdDgl~ 443 (667)
||++||++||++||++|++|++|+++++|++++|++.|+|++++||+||++|||+++|+++|||+++.|||||||||||+
T Consensus 615 INalAR~~LIn~gGiie~~fspg~~~~elss~aYk~~w~Fd~~~LP~DL~kRGva~~D~~~p~gl~l~ipdYPYrdDGL~ 694 (918)
T PLN02305 615 INALARQSLINGGGIIEACFSPGKYAMELSSAAYKSMWRFDMEALPADLIRRGMAEEDPSMPCGVRLVIEDYPYAADGLL 694 (918)
T ss_pred HHHHHHHhccCCCCceeeeeccchhHHHHHHHHHHhcCcCccccCHHHHHHcCCCccCCCCcccccccCCCCchhhhhHH
Confidence 99999999999999999999999999999999999779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccCcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCChhHHHHHHhHhhhcccccccccccc
Q 005962 444 LWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFG 523 (667)
Q Consensus 444 iW~aI~~~V~~yv~~yY~~D~~V~~D~ELQaW~~Ei~~~G~~d~~~~~g~p~~~t~~~Lv~~lT~iIf~aSaqHAAVNfg 523 (667)
||+||++||++||++||++|++|++|.|||+||+||+++||+|+++.+|||+|+|+++||++||+|||+|||||||||||
T Consensus 695 IW~AIk~wV~~yV~~YY~~D~~V~~D~ELQaW~~Ei~~~Gh~d~kd~~~~p~l~T~~eLi~~lT~IIwtaSaqHAAVNFg 774 (918)
T PLN02305 695 IWSAIKEWVESYVDHFYSEPNSITSDLELQAWWDEIKNKGHYDKRNEPWWPKLNTKEDLSGILTTMIWIASGQHAAINFG 774 (918)
T ss_pred HHHHHHHHHHHHHHhhCCChhhhccCHHHHHHHHHHHhcCCCCCCCCCCCcCCcCHHHHHHHHHhhhhhcchhhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcccccCCCCCCCCCCChhHHhhhcCcHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCccccccCCC--CC
Q 005962 524 QYTFGGYFPNRPTVARTKMPIEDPSDEDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQ--AW 601 (667)
Q Consensus 524 Q~~y~gfvPN~P~~lr~p~P~~~kg~~~~~~~~~~~e~~~l~~LP~~~~a~~~m~~~~~LS~~~~de~yLG~~~~~--~~ 601 (667)
||+|+||+||+|++||+|||++ +..++++|+.+||+++|++||++.||+.+|+++++||+|++||+|||++.+. .|
T Consensus 775 Qydy~gfvPN~P~~~Rrp~P~~--~~~~~~~l~~~pe~~~L~tLP~~~qa~~~mav~~iLS~hs~de~yLG~~~~~~~~w 852 (918)
T PLN02305 775 QYPFGGYVPNRPTLMRKLIPQE--NDPDYEKFIRNPQYTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGELRHLHSHW 852 (918)
T ss_pred CcccccccCCCchhhcCCCCCC--CCchHHHhhhChHHHHHHHCCcHHHHHHHHHHHHHhccCCCCcccccCCCCccccc
Confidence 9999999999999999999987 6678999999999999999999999999999999999999999999999875 69
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcCCceeecCCCCCCCCcCCCCccccC
Q 005962 602 GDDPVIKAAFERFSGRLKELEGIIDERNANENLKNRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 667 (667)
Q Consensus 602 ~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~~~r~~~~~~PY~yL~Ps~~~g~t~~~IpnSisI 667 (667)
+.|+++++|+++|+++|++||++|++||++++||||+||+++||+||+|+++||||||||||||||
T Consensus 853 ~~D~~~~~A~~rF~~~L~eIE~~I~~RN~~~~lkNR~G~~~~PY~lL~P~s~~G~T~rgIPNSISI 918 (918)
T PLN02305 853 INDHEVVKLFNKFSARLEEIEKTINERNKDIRLKNRNGAGIPPYELLLPTSGPGVTGRGIPNSISI 918 (918)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCCCCccccCCCCCCCCCcCCCCCcccC
Confidence 999999999999999999999999999999999999999999999999999999999999999998
No 2
>PLN02264 lipoxygenase
Probab=100.00 E-value=3.1e-183 Score=1549.36 Aligned_cols=612 Identities=50% Similarity=0.940 Sum_probs=582.0
Q ss_pred CCCCCCCCCCC---CCccCCCCCcchhhhhhhhhhHHHHHHhhhhhhhhhhhccCCCCCCCHHHHHHHhhcCCCCCCchh
Q 005962 48 IADPASESRTL---INYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPET 124 (667)
Q Consensus 48 ~~d~~~e~r~~---~~ylPrDe~F~~~K~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~f~sf~di~~Ly~~~~~~~~~~~ 124 (667)
+|||+||||.. .+||||||+|++.|.++|.+.++|+++|.++|.++++++.+ +|+||+||++||.+|++++...
T Consensus 303 ~~dp~~Esr~~~~~~iYvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~--~F~~f~~i~~Ly~~g~~l~~~~- 379 (919)
T PLN02264 303 DSDMMAESRVEKPLPMYVPRDEQFEESKQDTFAAGRLKAVLHNLIPSLKASILAE--DFANFGEIDSLYKEGLLLKLGF- 379 (919)
T ss_pred CCCCcccccccCCCceeCCCCCCcccchhhhHHHHHHHHHHHHhhhhhhhhcCCC--CCCCHHHHHHHHhcCCcCCcch-
Confidence 48999999954 47999999999999999999999999999999999998753 9999999999999999988410
Q ss_pred hhHHHHHHhh-hhhhhhhccccccccccccCccccccCcccccccHHHHHHHhhCCCccccccccCCCCCCCCCCccCCC
Q 005962 125 FKEKALWRTI-LPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGP 203 (667)
Q Consensus 125 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~P~~~~~~~~~W~~D~~Fg~Q~L~G~NP~~I~~~~~~P~~~~ld~~~yg~ 203 (667)
.+...+.+ +|.+.+.+.++++.++|||+|++|++|+++|++|+|||||+|||+||++|+||++||++|+||++.||+
T Consensus 380 --~~~~~~~~p~~~~~~~~~~~~~~~lkf~~P~vi~~d~~~W~~DeeFarQ~LaGvNP~~I~rl~e~P~~s~ld~~~yg~ 457 (919)
T PLN02264 380 --QDDIFKKFPLPKVVTTLQESSEGLLKYDTPKILSKDKFAWLRDDEFARQAIAGINPVNIERVKVFPPVSNLDPEIYGP 457 (919)
T ss_pred --hhhHhhcCChHHHHHHhhhcccccccCCCCceeecChhhccCHHHHHHHHHcCCCchhhhhhhhcCCCCCCCHhhcCC
Confidence 11122233 335555567888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHhCCcccHHHHHhcCcEEEeccccccchhhhhcccCCCccccccceEEEecCCCceeeEEEEecCCCC
Q 005962 204 PESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPM 283 (667)
Q Consensus 204 ~~~~vt~~~i~~~l~g~~tl~~al~~grLFi~Dy~~~~lp~~~~in~~~g~~~yA~~~Lffl~~~g~L~PiAIqL~~~~~ 283 (667)
++|+||++||++.|+| +||++||++|||||+||||++||+++++|..+|+++|||+||||++++|+|+||||||+++++
T Consensus 458 ~~s~it~e~v~~~L~G-~Tl~eAl~~~rLFilDy~d~~lp~l~~in~~~g~~~YAprtLFfL~~dG~L~PlAIqL~~p~~ 536 (919)
T PLN02264 458 QHSALTEDHIIGHLDG-LSVQQALEENRLFMVDYHDIYLPFLDRINALDGRKAYATRTIFFLTRLGTLKPIAIELSLPPS 536 (919)
T ss_pred ccchhhHHHHhhccCC-CcHHHHHHcCCEEEEeChhhhhhhhhhhccCCCcEeEcceEEEEECCCCCEeeEEEEecCCCC
Confidence 9999999999999998 999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCceeeCCCCCCCchhHHHHHHHHHhhhhhhhHHHHhhhhhccchhHHHHHHhccCCccCchhhhcccchhhhhc
Q 005962 284 DGKPQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTME 363 (667)
Q Consensus 284 ~~~~~~~~VftP~d~~~~~~~W~LAK~~v~~aD~~~HqlisHll~THlv~Epf~iAt~RqLs~~HPI~kLL~PH~r~tl~ 363 (667)
++++..++||||+++++++|.|+||||||++||+++||+++||++||+++|||||||+||||.+|||||||.||||+||+
T Consensus 537 ~~~~~~~~VftP~~d~~~~w~W~LAK~~V~~aD~~~HQlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~TL~ 616 (919)
T PLN02264 537 GPNSRSKRVVTPPVDATSNWMWQLAKAHVCSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLE 616 (919)
T ss_pred CCCcCcceeECCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhcccCCccCcHHHHHHHHHHHHHH
Confidence 66566789999976667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHhhcccCCcccccccCCchhHHHHHHHHHhccCCCCCCCCchHHHhcCCCCCCCCCCccccccccCCccchhhHH
Q 005962 364 INALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPFAKDGLD 443 (667)
Q Consensus 364 IN~~AR~~LI~~gG~id~~~~~G~~~~el~~~~y~~~w~f~~~~lP~DL~~RG~~~~D~~~~~g~~~~lp~YpYrdDgl~ 443 (667)
||++||+.||++||++|++|++|+++++|++++|++.|+|++++||+||++|||+++|+++|||+++.|||||||||||+
T Consensus 617 INalAR~~LIn~gGiid~~f~pg~~~~elss~aYk~~W~F~~~~LP~DL~~RGv~~~D~~~phgl~l~ipdYPYrdDGL~ 696 (919)
T PLN02264 617 INALARQTLISADGVIESCFTAGQYGMEISAAAYKNSWRFDMEGLPADLIRRGMAVPDPTQPHGLKLLIEDYPYANDGLL 696 (919)
T ss_pred HHHHHHHhccCCCceEEEeeccchhHHHHHHHHHHhccCCccccCHHHHHHcCCCCCCcccccchhhccCCCcchhhHHH
Confidence 99999999999999999999999999999999999669999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccccCcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCChhHHHHHHhHhhhcccccccccccc
Q 005962 444 LWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFG 523 (667)
Q Consensus 444 iW~aI~~~V~~yv~~yY~~D~~V~~D~ELQaW~~Ei~~~G~~d~~~~~g~p~~~t~~~Lv~~lT~iIf~aSaqHAAVNfg 523 (667)
||+||++||++||++||++|++|++|.|||+||+||++.||+++++.+|||+|+|+++||++||+|||+||+||||||||
T Consensus 697 iW~AIk~~V~~yv~~YY~~D~~V~~D~ELQaW~~Ei~~~Gh~d~~d~~~~p~l~T~~eLi~~lT~IIf~aSaqHAAVNFg 776 (919)
T PLN02264 697 LWSAIQTWVRTYVERYYPDPSLICTDKELQAWYSESINVGHADLRDADWWPKLSTVDDLVSILTTLIWLASAQHAALNFG 776 (919)
T ss_pred HHHHHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHhccCCCCcCCCCCCCCCCHHHHHHHHHHHHHhhhhhhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCcccccCCCCCCCCCCChhHHhhhcCcHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCccccccCCC-CCC
Q 005962 524 QYTFGGYFPNRPTVARTKMPIEDPSDEDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQ-AWG 602 (667)
Q Consensus 524 Q~~y~gfvPN~P~~lr~p~P~~~kg~~~~~~~~~~~e~~~l~~LP~~~~a~~~m~~~~~LS~~~~de~yLG~~~~~-~~~ 602 (667)
||+|+||+||+|++||+|||++ |+.+|++|+.+|++++|++||++.||+.+|+++++||+|++||+|||++..+ .|+
T Consensus 777 Qydy~gfvPN~P~~~rrp~P~~--~~~e~~~~~~~pe~~~L~tlP~~~qt~~~ms~~~iLS~hs~dE~yLG~~~~~~~w~ 854 (919)
T PLN02264 777 QYPYGGYVPNRPPLMRRLIPDE--SDPEYASFLADPQKYYFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWT 854 (919)
T ss_pred cccccccCCCCChHhcCCCCCC--CChhhhhhhcChHHHHHHHCCCHHHHHHHHHHHHHHhhcCCCceeccCCCCccccc
Confidence 9999999999999999999987 5688999999999999999999999999999999999999999999998765 799
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcCCceeecCCCCCCCCcCCCCccccC
Q 005962 603 DDPVIKAAFERFSGRLKELEGIIDERNANENLKNRTGAGMVPYELMKPFSEPGVTGQGVPYSISI 667 (667)
Q Consensus 603 ~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~~~r~~~~~~PY~yL~Ps~~~g~t~~~IpnSisI 667 (667)
.|+++++|+++|+++|++||++|++||++++||||+||+++||+||+|+++||||||||||||||
T Consensus 855 ~D~~~~~af~rF~~~L~eIe~~I~~RN~~~~~knR~G~~~~PY~lL~P~s~~G~T~~gIPNSISI 919 (919)
T PLN02264 855 GDAEIVEAFYGFSAEIGRIEKEIEKRNADPSRRNRCGAGVLPYELLAPSSEPGVTCRGVPNSVSI 919 (919)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCCCCCCceeeCCCCCCCCCcCCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998
No 3
>PLN02337 lipoxygenase
Probab=100.00 E-value=3e-180 Score=1530.64 Aligned_cols=613 Identities=48% Similarity=0.849 Sum_probs=580.1
Q ss_pred CCCCCCCCCCC----CCccCCCCCcchhhhhhhhhhHHHHHHhhhhhhhhhhhccCCCCCCCHHHHHHHhhcCCCCCCch
Q 005962 48 IADPASESRTL----INYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPE 123 (667)
Q Consensus 48 ~~d~~~e~r~~----~~ylPrDe~F~~~K~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~f~sf~di~~Ly~~~~~~~~~~ 123 (667)
+|||+||||.. .+||||||+|++.|.++|.+.++|+++|.++|.++++++.+..+|+||+||++||.+|+++|..+
T Consensus 242 ~~dp~~esr~~~~~~~~yvPrDE~f~~~k~~~f~~~~l~~~~~~~~p~~~~~~~~~~~~f~~f~~i~~ly~~g~~lp~~~ 321 (866)
T PLN02337 242 KTDPNSESRLPLLSLNIYVPRDERFGHLKMSDFLAYALKAIAQVLVPELEALFDKTPNEFDSFEDVLKLYEGGIKLPNGP 321 (866)
T ss_pred CCCCccccccccCCCCcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhhcCCCCCCch
Confidence 48999999953 47999999999999999999999999999999999999877899999999999999999988421
Q ss_pred hhhHHHHHHhh-hhhhhhhccccccccccccCccccccCcccccccHHHHHHHhhCCCccccccccCCCCCCCCCCccCC
Q 005962 124 TFKEKALWRTI-LPRLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYG 202 (667)
Q Consensus 124 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~P~~~~~~~~~W~~D~~Fg~Q~L~G~NP~~I~~~~~~P~~~~ld~~~yg 202 (667)
.. +.+.+.+ ++.+.+.+.++++.++|||+|+||++|+.+|++|++||||+|||+||++|+||++||++++|||++||
T Consensus 322 ~~--~~~~~~~p~~~~~~~~~~~~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~rl~~~P~~~~ld~~~yg 399 (866)
T PLN02337 322 LL--EELRKNIPLEMLKELLRTDGEYLLKFPMPQVIKEDKSAWRTDEEFAREMLAGVNPVVIRRLTEFPPKSKLDPKKYG 399 (866)
T ss_pred HH--HHhhhcChHHHHHHHHhhcccccccCCCCceeecccccccCHHHHHHHHhcCCCChheeecccCCCcccCChhhcC
Confidence 10 1122212 23466666788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHHHhCCcccHHHHHhcCcEEEeccccccchhhhhcccCCCccccccceEEEecCCCceeeEEEEecCCC
Q 005962 203 PPESAITKELIEKEIGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPP 282 (667)
Q Consensus 203 ~~~~~vt~~~i~~~l~g~~tl~~al~~grLFi~Dy~~~~lp~~~~in~~~g~~~yA~~~Lffl~~~g~L~PiAIqL~~~~ 282 (667)
+++|+||++||++.|+| +||++||++|||||+||||.+|||+.++|...++ .|||+||||++++|+|+||||||++|+
T Consensus 400 ~~~s~iT~e~v~~~L~g-~Tl~eAl~~~rLfi~Dy~d~~lp~l~~in~~~~k-~yA~~tLffl~~dG~L~PlAIqL~~p~ 477 (866)
T PLN02337 400 DQNSSITEEHIEKNLEG-LTVQEALEKNRLFILDHHDALMPYLRRINSTSTK-TYATRTLLFLKDDGTLKPLAIELSLPH 477 (866)
T ss_pred CccCccCHHHHHhccCC-ccHHHHHHcCCEEEEecchhcCcccccccCCCCc-cccceeEEEECCCCCEeEEEEEeccCC
Confidence 99999999999999998 9999999999999999999899999889986555 999999999999999999999999876
Q ss_pred CCCC--CCCCceeeCCCCCCCchhHHHHHHHHHhhhhhhhHHHHhhhhhccchhHHHHHHhccCCccCchhhhcccchhh
Q 005962 283 MDGK--PQWKQVFTPSWHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRY 360 (667)
Q Consensus 283 ~~~~--~~~~~VftP~d~~~~~~~W~LAK~~v~~aD~~~HqlisHll~THlv~Epf~iAt~RqLs~~HPI~kLL~PH~r~ 360 (667)
..++ +..++||||+++++++|.|+|||+||++||+++||+|+||++||+++|||||||+||||.+|||||||.||||+
T Consensus 478 ~~~~~~g~~~~VfTP~~~~~~~~~W~lAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~ 557 (866)
T PLN02337 478 PQGDKFGAVSKVYTPAEDGVEGSVWQLAKAYVAVNDSGYHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLHPHFRD 557 (866)
T ss_pred CCcccCCCCCCeECCCCCCCCcchHHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHhccCCCcCcHHHHHHHHHHH
Confidence 4322 35699999998766789999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchHHHHhhcccCCcccccccCCchhHHHHHHHHHhccCCCCCCCCchHHHhcCCCCCCCCCCccccccccCCccchh
Q 005962 361 TMEINALAREALVNAGGIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPFAKD 440 (667)
Q Consensus 361 tl~IN~~AR~~LI~~gG~id~~~~~G~~~~el~~~~y~~~w~f~~~~lP~DL~~RG~~~~D~~~~~g~~~~lp~YpYrdD 440 (667)
||+||++||+.||++||++|+++++|+++++|++++|++ |+|++++||+||++|||+++|+++|||+++.|||||||||
T Consensus 558 Tl~IN~~AR~~LI~~gGiid~~~~~g~~~~els~~~yk~-w~F~~~~LP~DL~~RGv~~~D~~~p~g~~l~i~dYPYrdD 636 (866)
T PLN02337 558 TMNINALARQILINAGGILESTVFPGKYALEMSSVVYKN-WNFTEQALPADLIKRGVAVEDPSSPHGVRLLIEDYPYAVD 636 (866)
T ss_pred HHHHHHHHHHheeCCCCeeeeeeccchhHHHHHHHHHhc-CCcccccCHHHHHHcCCCccccccccccccccCCCcchhh
Confidence 999999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcccccccccCcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCChhHHHHHHhHhhhccccccccc
Q 005962 441 GLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPEDLIDIITTIAWVASGHHAAV 520 (667)
Q Consensus 441 gl~iW~aI~~~V~~yv~~yY~~D~~V~~D~ELQaW~~Ei~~~G~~d~~~~~g~p~~~t~~~Lv~~lT~iIf~aSaqHAAV 520 (667)
||+||+||++||++||++||++|++|++|.|||+||+||+++||+++++.+|||+|+|+++||++||+|||+||||||||
T Consensus 637 GL~iW~AI~~~V~~yv~~YY~~D~~V~~D~ELQaW~~Ei~~~G~gd~k~~~~~p~l~T~~eLv~~lT~iIf~aSaqHAAV 716 (866)
T PLN02337 637 GLEIWSAIETWVKEYCAFYYPTDDMVQGDTELQSWWKEVREEGHGDLKDEPWWPKMQTVAELIESCTIIIWIASALHAAV 716 (866)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchHhhccCHHHHHHHHHHHhcCCCCccCCCCCCccCCHHHHHHHHHhhhhhcchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCCcccccCCCCCCCCCCChhHHhhhcCcHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCccccccCCCC
Q 005962 521 NFGQYTFGGYFPNRPTVARTKMPIEDPSDEDWKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQA 600 (667)
Q Consensus 521 NfgQ~~y~gfvPN~P~~lr~p~P~~~kg~~~~~~~~~~~e~~~l~~LP~~~~a~~~m~~~~~LS~~~~de~yLG~~~~~~ 600 (667)
|||||+|+||+||+|++||+|||++ |+.++.+|..+|++++|++||++.||+.+|+++++||+|+.||+|||+|.+..
T Consensus 717 NfgQy~y~gfvPN~P~~~r~~~P~~--~~~e~~~l~~~~e~~~L~tlp~~~qt~~~~~l~~lLS~~s~de~yLG~~~~~~ 794 (866)
T PLN02337 717 NFGQYPYAGYLPNRPTVSRRFMPEP--GTPEYEELEKNPDKAFLKTITAQLQTLLGISLIEILSRHSSDEVYLGQRDTPE 794 (866)
T ss_pred hcCCcccccccCCCchhhcCCCCCC--CchhhhhhccCcHHHHHHhCCCHHHHHHHHHHHHHhccCCCCceeccCcCCcc
Confidence 9999999999999999999999975 78889999999999999999999999999999999999999999999998778
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcCCceeecCCC-----CCCCCcCCCCccccC
Q 005962 601 WGDDPVIKAAFERFSGRLKELEGIIDERNANENLKNRTGAGMVPYELMKPFS-----EPGVTGQGVPYSISI 667 (667)
Q Consensus 601 ~~~d~~~~~a~~~F~~~L~~ie~~I~~RN~~~~~~~r~~~~~~PY~yL~Ps~-----~~g~t~~~IpnSisI 667 (667)
|+.|+++++|+++|+++|++||++|++||+++++|||+||+++||+||+|++ +||||||||||||||
T Consensus 795 w~~d~~~~~a~~~F~~~L~eIe~~I~~RN~~~~~knr~G~~~~PY~lL~P~~~~~~~~~g~t~~gIPNSISI 866 (866)
T PLN02337 795 WTSDAEPLEAFKRFGERLVEIENRIVDMNKDPRLKNRVGPVKMPYTLLYPNTSDYTGEGGLTGKGIPNSVSI 866 (866)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccCCCCCCceeeCCCCccccCCCCcccCCCCCcccC
Confidence 9999999999999999999999999999999999999999999999999999 999999999999998
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=9.4e-169 Score=1435.81 Aligned_cols=626 Identities=53% Similarity=0.909 Sum_probs=541.8
Q ss_pred ccccchh-HHHHhh-----------hhcccccCCCC--------CCccccC----CCC------------CCCCCCCCCC
Q 005962 14 PIITNKK-RLITSI-----------KQYFPFSSFDH--------NVDLSLC----TFP------------IADPASESRT 57 (667)
Q Consensus 14 ~~~~~~~-~~~~~~-----------~~~~~~~~~~~--------~~~~~~~----~~~------------~~d~~~e~r~ 57 (667)
+|-..|+ ||++.| |-|. +--|++ ...+.|- .|| ++||++|||.
T Consensus 3 ~l~~~R~~eL~~lrG~g~gerk~~dRiYd-Yd~YnDLG~pd~~~~~~RpvlGgs~~~PYPRR~RTGr~~~~~Dp~sEsr~ 81 (667)
T PF00305_consen 3 GLKKLREEELKNLRGDGTGERKEWDRIYD-YDVYNDLGNPDKGPELARPVLGGSKEFPYPRRCRTGRPPTKTDPKSESRS 81 (667)
T ss_dssp GGHHHHHHHHHHHHTTS-S---TT------EE-B-SSSBGGGTGCG----BSSSSSS----EE----SBESSCTTSBGC-
T ss_pred HHHHHHHHHHHHhcCCCCCccccccceee-eecccCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCccccCcc
Confidence 4556677 699988 8999 999988 3445662 354 4899999998
Q ss_pred CCCccCCCCCcchhhhhhhhhhHHHHHHhhhhhhhhhhhccCCCCCCCHHHHHHHhhcCCCCCCchhhhHHHHHHhh-hh
Q 005962 58 LINYVPRDEAFSEIKQLQFSAKTLYSVLHGLVPSLETAIIDTDLGFPYFTTIDKLFNEGVNVPMPETFKEKALWRTI-LP 136 (667)
Q Consensus 58 ~~~ylPrDe~F~~~K~~~f~~~~~~~~~~~~~~~l~~~~~~~~~~f~sf~di~~Ly~~~~~~~~~~~~~~~~~~~~~-~~ 136 (667)
.++||||||+|++.|+.+|.++++|+++|.++|.|++++..+..+|+||+||++||++|++++. +...+.. ++
T Consensus 82 ~~~YVPRDE~F~~~K~~dF~~~~lks~~~~llP~L~~~~~~~~~eF~sF~dId~LY~~g~~l~~------~~~~~~~~~~ 155 (667)
T PF00305_consen 82 GDIYVPRDERFSEVKQSDFLANALKSLLHALLPALKSLFDDTPNEFDSFEDIDDLYEEGIKLPT------DLLKKLIPLE 155 (667)
T ss_dssp SSGGS-GGGS-SCSSGGGHHHHHHHHHHHTHHHHHHHHTTSSTSSCSSHHHHHHHHTTTEE--H------HHHCCHTTST
T ss_pred ccccCCccccccchhHHHHHHHHHHHHHHhHHHHHHHHhcccCcccCCHHHHHHHHhccccchh------hHhhhcCcHH
Confidence 8999999999999999999999999999999999999977778999999999999999988872 1222222 33
Q ss_pred hhhhhccccccccccccCccccccCcccccccHHHHHHHhhCCCccccccccCCCCCCCCCCccCCCCCCcccHHHHHHH
Q 005962 137 RLVKGIEDTGKEVLRFETPETMDRDKFFWFRDEEFGRQTLAGLNPYSIRLVTEWPLRSTLDPEIYGPPESAITKELIEKE 216 (667)
Q Consensus 137 ~~~~~~~~~~~~~~~~p~P~~~~~~~~~W~~D~~Fg~Q~L~G~NP~~I~~~~~~P~~~~ld~~~yg~~~~~vt~~~i~~~ 216 (667)
.+.+.+.+++++++|||+|+|++.++++|++|++||||+|||+||++|+||+++|++++||+++||+++++||++||+..
T Consensus 156 ~~~~~~~~~~~~~~kf~~p~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~~~ld~~~yg~~~s~it~e~i~~~ 235 (667)
T PF00305_consen 156 LLKELFRTDGENILKFPTPQVIERDRFAWRTDEEFARQRLAGVNPVVIRRLTEFPPKSKLDPAIYGDQESPITDEHIEPQ 235 (667)
T ss_dssp TCCTTSBETSSSEEB----HHHHCHHHHTTSHHHHHHHHHHSSSTTSEEE-SSSSTTS-SSHHCCTSSB-STTHHHHHHH
T ss_pred HHHHHHhhcccceeeCCCCccchhhhhccCChHHHHHHHHcCCCchHhhccccCCccccccHhhcCCccCCchHHHhhhc
Confidence 46677778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcccHHHHHhcCcEEEeccccccchhhhhcccCCCccccccceEEEecCCCceeeEEEEecCCCCCCCCCCCceeeCC
Q 005962 217 IGGIMTVEEAIKQKKLFILDYHDLLLPYVEKVRELKGTTLYGSRTLFFSYPSGTLRPLAIELTRPPMDGKPQWKQVFTPS 296 (667)
Q Consensus 217 l~g~~tl~~al~~grLFi~Dy~~~~lp~~~~in~~~g~~~yA~~~Lffl~~~g~L~PiAIqL~~~~~~~~~~~~~VftP~ 296 (667)
|+| +||++||++|||||+||+++.+|+++++|. .+++.|||+||||++++|+|+||||||++|+..+.++.++||||+
T Consensus 236 l~g-~tl~~al~~~rLfi~Dy~~~~~~~~~~i~~-~~~~~~A~~~Lf~l~~~g~L~PlAIqL~~p~~~~~~~~~~v~tP~ 313 (667)
T PF00305_consen 236 LEG-LTLEEALKDGRLFILDYHDLFGPYLNKINE-KGRYAYAPRALFFLNPDGTLKPLAIQLSQPGPEGPPQFNPVFTPS 313 (667)
T ss_dssp CHC-S-HHHHHHTT-EEEEEEGGGTTHHHHHHTT-CCGBG-EEEEEEEEETTSEEEEEEEECSECBTTCS-EEEEEE-TT
T ss_pred cCC-CcHHHHHhcCCeEEEeehhhcccccccccc-CCcEeccceeEEEEcCCCCEeeeEEeccCCCCcccCccceeeecC
Confidence 999 999999999999999999999999999988 788999999999999999999999999887544434568999999
Q ss_pred CCCCCchhHHHHHHHHHhhhhhhhHHHHhhhhhccchhHHHHHHhccCCccCchhhhcccchhhhhcchHHHHhhcccCC
Q 005962 297 WHSTECWLWRLAKAHVLAHDSGYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPINRLLQPHFRYTMEINALAREALVNAG 376 (667)
Q Consensus 297 d~~~~~~~W~LAK~~v~~aD~~~HqlisHll~THlv~Epf~iAt~RqLs~~HPI~kLL~PH~r~tl~IN~~AR~~LI~~g 376 (667)
++++.+|.|+|||+||++||+++||+++||++||+|||||+|||+||||.+|||||||.|||++||+||++||.+||++|
T Consensus 314 ~d~~~~~~W~lAK~~v~~aD~~~HqlisHll~THlv~Ep~~vAt~R~Ls~~HPi~kLL~PH~r~tl~IN~~Ar~~Li~~g 393 (667)
T PF00305_consen 314 DDGTEDWLWLLAKAHVQVADANYHQLISHLLRTHLVMEPFIVATHRQLSEMHPIYKLLHPHFRYTLAINALARQSLINAG 393 (667)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHS-TTSHHHHHHGGGGTTHHHHHHHHHHHTSSTT
T ss_pred CCCccchHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhHHHHHHHhcCCCCCCCceeeccceeecchhhhHHHHHHhhccC
Confidence 55456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCchhHHHHHHHHHhccCCCCCCCCchHHHhcCCCCCCCCCCccccccccCCccchhhHHHHHHHHHHHHHhc
Q 005962 377 GIIESTFSPGKYSMELSSVAYDKHWRFDHEALPKDLISRGMAVEDPSAPRGIKLTIEDYPFAKDGLDLWDALKQWVTDFV 456 (667)
Q Consensus 377 G~id~~~~~G~~~~el~~~~y~~~w~f~~~~lP~DL~~RG~~~~D~~~~~g~~~~lp~YpYrdDgl~iW~aI~~~V~~yv 456 (667)
|++|++|++|+++++|++++|++ |+|++++||+||++|||+++|++++||+++.||+||||+|||+||+||++||++||
T Consensus 394 G~id~~~~~g~~~~~l~~~~y~~-~~f~~~~lP~dL~~RG~~~~D~~~~~g~~~~l~~YpY~dDgl~iW~aI~~~V~~~v 472 (667)
T PF00305_consen 394 GIIDKTFSPGKYGMELSSRAYKN-WRFDDQALPADLKKRGMAVDDPSSPHGLRLVLPDYPYRDDGLLIWDAIKKFVSDYV 472 (667)
T ss_dssp SHHHHHSTTTTTHHHHHHHHHTT---GGGGSHHHHHHHTTSEEE-TTSTTSEETTSTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHhh-CCcccccCHHHHHhhcccccccccccccccccccCChhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCChhHHHHHHhHhhhccccccccccccccccccccCCccc
Q 005962 457 NHYYPNPSSVESDEELRSWWTEIRTVGHADKKDEPWWPVLKTPEDLIDIITTIAWVASGHHAAVNFGQYTFGGYFPNRPT 536 (667)
Q Consensus 457 ~~yY~~D~~V~~D~ELQaW~~Ei~~~G~~d~~~~~g~p~~~t~~~Lv~~lT~iIf~aSaqHAAVNfgQ~~y~gfvPN~P~ 536 (667)
++||++|++|++|.|||+||+||+++||+++++.++|++|+|+++||++||+|||+||+||||||||||+|+||+||+|+
T Consensus 473 ~~yY~~d~~V~~D~ELQaW~~Ei~~~G~~~~~~~~~~~~i~t~~~Li~~lT~iI~~~S~qHaAVNfgQ~~y~g~~PN~P~ 552 (667)
T PF00305_consen 473 NLYYKSDEAVANDTELQAWWNEIRTVGHGDKKDEGFPPKIKTRDELIDILTTIIFTASAQHAAVNFGQYDYYGFVPNRPT 552 (667)
T ss_dssp HHHSSSHHHHHT-HHHHHHHHHHHHTTTTGGTTGTTSSSSSSHHHHHHHHHHHHHHHTHHHHHHHTTHHHHHSSGGGS-S
T ss_pred hhhcCCcceeCcCHHHHHHHHHHhcccccCcCcCCCCCCCCCHHHHHHHHHHHeeecchhhhhhcccccceeeecCCCCh
Confidence 99999999999999999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCChh--HHhhhcCcHHHHHhcCCChHHHHHHHHHHHhhcCCCCCCccccccCCCCCCCcHHHHHHHHHH
Q 005962 537 VARTKMPIEDPSDED--WKLFLEKPEDVLLQCFPSQIQATTVMAILDTLSSHSPDEEYLGKQMEQAWGDDPVIKAAFERF 614 (667)
Q Consensus 537 ~lr~p~P~~~kg~~~--~~~~~~~~e~~~l~~LP~~~~a~~~m~~~~~LS~~~~de~yLG~~~~~~~~~d~~~~~a~~~F 614 (667)
+||+++|.+ +..+ +++++.+||+++|++||++.||+.+|+++++||+|++||+|||+|++.+|+.|+++++|+++|
T Consensus 553 ~~r~~~P~~--~~~~~~~~~l~~~~e~~~l~~LP~~~~a~~~~~~~~~LS~~~~de~~Lg~~~~~~w~~d~~~~~a~~~F 630 (667)
T PF00305_consen 553 ALRRPMPPP--TTKEVTYEELLKDPEKDFLSTLPSKQQALLQMAVLELLSRHSPDEEYLGQYPEPHWFSDPEAKAAFERF 630 (667)
T ss_dssp -BSSSS--T--SSSH--HHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTCB-TT--BTTT-SSTTSSSSHHHHHHHHHH
T ss_pred hhcccCCCC--CcchhhhhhhccChHHHHHHhcCCHHHHHHHHHHHHHhccCCCCcccccCcCcccccccHHHHHHHHHH
Confidence 999888876 4445 899999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccccCCCCcCCceeecCC
Q 005962 615 SGRLKELEGIIDERNANENLKNRTGAGMVPYELMKPF 651 (667)
Q Consensus 615 ~~~L~~ie~~I~~RN~~~~~~~r~~~~~~PY~yL~Ps 651 (667)
+++|++||++|++||+++++|||+|+|++||+||+||
T Consensus 631 ~~~L~~ie~~I~~RN~~~~~~nr~g~~~~PY~~L~Ps 667 (667)
T PF00305_consen 631 QEELKEIEEEIDERNKDRKLKNRNGPGKVPYTYLLPS 667 (667)
T ss_dssp HHHHHHHHHHHHHHHTTSSSGGGTTTTT----TTSST
T ss_pred HHHHHHHHHHHHHHhCCccccccCCCCCCCccccCCC
Confidence 9999999999999999999999999999999999997
No 5
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=32.98 E-value=28 Score=36.28 Aligned_cols=24 Identities=29% Similarity=0.861 Sum_probs=20.0
Q ss_pred HHHHHHhcccccccccCcCCCHHHHHHHHH
Q 005962 449 KQWVTDFVNHYYPNPSSVESDEELRSWWTE 478 (667)
Q Consensus 449 ~~~V~~yv~~yY~~D~~V~~D~ELQaW~~E 478 (667)
.+||..||+.|| ..+.|+..|+++
T Consensus 178 ~~~Ve~YIKAyY------l~e~e~~~W~~~ 201 (234)
T PF10474_consen 178 REYVENYIKAYY------LPEEELEEWIRT 201 (234)
T ss_pred HHHHHHHHHHHc------CCHHHHHHHHHh
Confidence 579999999999 334689999975
No 6
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=26.43 E-value=1.1e+02 Score=29.61 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=38.1
Q ss_pred CcCCCHHHHHHHHHHHhhcCCCCCCCCCCC-CCCChhHHHHHHhHhhhccc
Q 005962 465 SVESDEELRSWWTEIRTVGHADKKDEPWWP-VLKTPEDLIDIITTIAWVAS 514 (667)
Q Consensus 465 ~V~~D~ELQaW~~Ei~~~G~~d~~~~~g~p-~~~t~~~Lv~~lT~iIf~aS 514 (667)
-|.+|++|..+++++..+ .....+-.|.| .+++.+++..++-.||-+|=
T Consensus 11 lIe~dp~l~ml~~~Mf~q-~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~AP 60 (141)
T PF12588_consen 11 LIESDPRLYMLFTQMFDQ-PPYNADPTGNPPQIRDYDEMLQLLNHIMTTAP 60 (141)
T ss_pred HHhcCHHHHHHHHHHHhC-cccccCCCCCccccccHHHHHHHHHHHHhhCC
Confidence 467899999999999987 22223334677 89999999999999996543
No 7
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=23.66 E-value=2.5e+02 Score=32.11 Aligned_cols=109 Identities=22% Similarity=0.313 Sum_probs=72.5
Q ss_pred hHHHHHHhccCCccCchhhhcccchhhhhcchHHH--------------HhhcccCCcccccccCCchhHHHHH--HHHH
Q 005962 334 EPYIIATNRQLSAMHPINRLLQPHFRYTMEINALA--------------REALVNAGGIIESTFSPGKYSMELS--SVAY 397 (667)
Q Consensus 334 Epf~iAt~RqLs~~HPI~kLL~PH~r~tl~IN~~A--------------R~~LI~~gG~id~~~~~G~~~~el~--~~~y 397 (667)
+-+.+|..+|=|..-=+..+|.|--..++.||..= -..=|+.=|++.-.-+|+.+.-|+- +.-|
T Consensus 91 ~~L~~A~q~qKPds~elad~LkPI~e~i~eI~~fkE~nRkS~~FNhLsav~e~i~algWVav~~tP~p~vke~~daa~FY 170 (480)
T KOG2675|consen 91 AFLWVASQKQKPDSNELADLLKPINEEIGEINNFKEKNRKSPFFNHLSAVSESIPALGWVAVKPTPAPYVKEFKDAAQFY 170 (480)
T ss_pred HHHHHHHhccCCChHHHHHHhhhHHHhhhHHhhhhhcccCchHHHHHHHHHhhcccceeEecCCCCchHHHHHHHHHHHH
Confidence 45667888888888889999999999999998743 2223444466655555666654442 2233
Q ss_pred hccCCCCCCCCchHHHh-cCCCCCCCCCCccccccccCCccchhhHHHHHHHHHHHHHhcccccccccCcCCCHHHHHHH
Q 005962 398 DKHWRFDHEALPKDLIS-RGMAVEDPSAPRGIKLTIEDYPFAKDGLDLWDALKQWVTDFVNHYYPNPSSVESDEELRSWW 476 (667)
Q Consensus 398 ~~~w~f~~~~lP~DL~~-RG~~~~D~~~~~g~~~~lp~YpYrdDgl~iW~aI~~~V~~yv~~yY~~D~~V~~D~ELQaW~ 476 (667)
.+ .-|++ ||-+ ..-+ +||+.|+.+| .|||+.+
T Consensus 171 ~N----------rvLkEyk~~D----------------------~~hv-----eWvKa~l~l~----------~eL~~YV 203 (480)
T KOG2675|consen 171 TN----------RVLKEYKEKD----------------------PRHV-----EWVKAYLALF----------LELQAYV 203 (480)
T ss_pred HH----------HHHHHhccCC----------------------hhHH-----HHHHHHHHHH----------HHHHHHH
Confidence 32 11221 3331 2222 7999999998 7899999
Q ss_pred HHHHhhcCCCCCC
Q 005962 477 TEIRTVGHADKKD 489 (667)
Q Consensus 477 ~Ei~~~G~~d~~~ 489 (667)
+|-.+-|....++
T Consensus 204 k~hhtTGl~W~~~ 216 (480)
T KOG2675|consen 204 KEHHTTGLVWNKD 216 (480)
T ss_pred HHhccccceecCC
Confidence 9999888766555
No 8
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.14 E-value=1.5e+02 Score=21.79 Aligned_cols=30 Identities=33% Similarity=0.623 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCCCC-CCChhHHHHHHh
Q 005962 468 SDEELRSWWTEIRTVGHADKKDEPWWPV-LKTPEDLIDIIT 507 (667)
Q Consensus 468 ~D~ELQaW~~Ei~~~G~~d~~~~~g~p~-~~t~~~Lv~~lT 507 (667)
.|.+|+.|..+ .|. . .|+ ..|+++|++.+-
T Consensus 5 s~~~L~~wL~~---~gi--~-----~~~~~~~rd~Ll~~~k 35 (38)
T PF10281_consen 5 SDSDLKSWLKS---HGI--P-----VPKSAKTRDELLKLAK 35 (38)
T ss_pred CHHHHHHHHHH---cCC--C-----CCCCCCCHHHHHHHHH
Confidence 46789999986 232 1 122 269999998764
No 9
>PF09545 RE_AccI: AccI restriction endonuclease; InterPro: IPR019054 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the restriction endonuclease AccI, which recognises and cleaves the double-stranded sequence GT^MKAC.
Probab=17.13 E-value=8.5e+02 Score=26.61 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhccccc-ccccCcCCCHHHHHHHHHHHhhcCCCCC--CC-----CCCC-------CCCChhHHHHHHh
Q 005962 443 DLWDALKQWVTDFVNHYY-PNPSSVESDEELRSWWTEIRTVGHADKK--DE-----PWWP-------VLKTPEDLIDIIT 507 (667)
Q Consensus 443 ~iW~aI~~~V~~yv~~yY-~~D~~V~~D~ELQaW~~Ei~~~G~~d~~--~~-----~g~p-------~~~t~~~Lv~~lT 507 (667)
+|-+||.+.-.+|+.+=| +|++.+++|.+...+..+...+|.+-.| |. ..++ ...+.++|-++|-
T Consensus 51 ~V~~AINeT~~~fvAV~YG~S~~~~agd~gFe~fyq~~Q~elnTIgKRPDlLiF~~~~~~~sL~~di~~~~~~~l~~~V~ 130 (366)
T PF09545_consen 51 RVLRAINETSSEFVAVRYGPSDAIPAGDEGFELFYQRLQRELNTIGKRPDLLIFKKSDFDDSLMFDISQIPHDKLDKYVK 130 (366)
T ss_pred HHHHHHhhccccEEEEEecCCCCCCcCchhHHHHHHHHHHHhhccCCCCcEEEEeccccchhhccccccCchHHHHHHHH
Confidence 478999999999999977 5899999999999999999886543222 11 0111 2456667777777
Q ss_pred Hhhhc
Q 005962 508 TIAWV 512 (667)
Q Consensus 508 ~iIf~ 512 (667)
..|+-
T Consensus 131 kAI~g 135 (366)
T PF09545_consen 131 KAIAG 135 (366)
T ss_pred Hhhee
Confidence 76654
No 10
>PF05017 TMP: TMP repeat; InterPro: IPR007713 This short repeat consists of the motif WXXh where X can be any residue and h is a hydrophobic residue. The repeat is named TMP after its occurrence in the tape measure protein (TMP). Tape measure protein is a component of phage tail and probably forms a beta-helix. Truncated forms of TMP lead to shortened tail fibres []. This repeat is also found in non-phage proteins where it may play a structural role.
Probab=14.92 E-value=55 Score=18.07 Aligned_cols=10 Identities=20% Similarity=0.946 Sum_probs=7.7
Q ss_pred HHHHHHHHHH
Q 005962 445 WDALKQWVTD 454 (667)
Q Consensus 445 W~aI~~~V~~ 454 (667)
|+.|++++++
T Consensus 1 Wn~Ik~~~s~ 10 (11)
T PF05017_consen 1 WNGIKSFFSG 10 (11)
T ss_pred CchHHHHhhc
Confidence 7888888764
Done!