BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005963
(667 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B4W|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Aldehyde
Dehydrogenase Complexed With Nad+
Length = 495
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 488 TLSSAKSMFVSQLLGTAMGCVFAPLTFWMYWTAFDIGSPDGPYKAPYAVILREMAILGIE 547
T K + +SQ + T T+ + W AFD GSP G YK + I RE G+E
Sbjct: 421 TTDVPKGIKISQQIRTG--------TYGINWYAFDPGSPFGGYK--NSGIGRENGPEGVE 470
Query: 548 GFSELPKHCLALCCGFFVA 566
F++ + + L G+ VA
Sbjct: 471 HFTQ--QKSVLLPMGYTVA 487
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 14/40 (35%)
Query: 228 GVGDSCGFDNFPSFGLILFKNTFYFDFSPTYVGCGLICPR 267
G C FDN G I K + Y G ICP
Sbjct: 244 GTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPE 283
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 14/40 (35%)
Query: 228 GVGDSCGFDNFPSFGLILFKNTFYFDFSPTYVGCGLICPR 267
G C FDN G I K + Y G ICP
Sbjct: 244 GTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPE 283
>pdb|2VXQ|H Chain H, Crystal Structure Of The Major Grass Pollen Allergen Phl P
2 In Complex With Its Specific Ige-Fab
Length = 216
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 260 GCGLICPR---IVNCSVLLGAIVSWGFLWPYISQHAG 293
G GL+ P ++C+V G+I S G+ W +I QH G
Sbjct: 7 GPGLVKPAQTLSLSCAVSGGSIRSGGYYWSWIRQHPG 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,136,356
Number of Sequences: 62578
Number of extensions: 702865
Number of successful extensions: 1686
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1679
Number of HSP's gapped (non-prelim): 11
length of query: 667
length of database: 14,973,337
effective HSP length: 105
effective length of query: 562
effective length of database: 8,402,647
effective search space: 4722287614
effective search space used: 4722287614
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)