Query 005963
Match_columns 667
No_of_seqs 130 out of 1106
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 16:21:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005963.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005963hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 1E-120 3E-125 982.6 34.7 606 11-656 52-732 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 4E-118 8E-123 1011.6 47.2 600 12-653 6-679 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 1E-101 3E-106 892.8 40.0 588 13-647 1-650 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 3E-100 7E-105 880.0 48.3 586 29-648 1-623 (624)
5 TIGR00733 putative oligopeptid 100.0 1.3E-78 2.8E-83 684.6 46.9 555 29-649 1-590 (591)
6 COG1297 Predicted membrane pro 100.0 1.9E-63 4.1E-68 535.2 34.7 567 22-653 7-618 (624)
7 TIGR00733 putative oligopeptid 94.6 5.2 0.00011 46.6 22.4 152 485-646 84-266 (591)
8 PF03169 OPT: OPT oligopeptide 86.9 18 0.0004 42.5 16.4 28 588-615 217-244 (624)
9 TIGR02106 cyd_oper_ybgT cyd op 46.0 27 0.00059 23.7 2.9 18 34-51 5-22 (30)
10 PRK14749 hypothetical protein; 45.0 30 0.00065 23.4 2.9 18 34-51 5-22 (30)
11 PF08173 YbgT_YccB: Membrane b 44.2 31 0.00067 23.1 2.9 18 34-51 5-22 (28)
12 PF14715 FixP_N: N-terminal do 38.0 28 0.00061 26.8 2.3 29 364-397 9-37 (51)
13 TIGR00728 OPT_sfam oligopeptid 34.6 5E+02 0.011 30.8 13.2 28 588-615 231-258 (654)
14 COG4890 Predicted outer membra 30.4 66 0.0014 22.5 2.8 18 34-51 5-22 (37)
15 KOG1289 Amino acid transporter 27.8 79 0.0017 36.3 4.6 63 32-94 392-454 (550)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-120 Score=982.58 Aligned_cols=606 Identities=17% Similarity=0.211 Sum_probs=521.8
Q ss_pred ccchhhhhcccCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhccccCccchhHHHHHHHHHHHHHHHHHhhhccC-----
Q 005963 11 LIEKITAEEDQLIPEWKDQITIRGLAVSAIMGTLFCIITHRLNLTVGIIPSLNIAAGLLGFLSVKSWTSFLSKLG----- 85 (667)
Q Consensus 11 ~~~~~~~~~~~~~~~~~p~lT~Ra~~lG~il~~v~a~~n~~~~lr~g~~~~~si~~~ils~~~~~~~~~~lp~~~----- 85 (667)
-.||||+.++..|||++|++|||+|++|++.+++++++||+|++|++....+++.+|++.+|+||+|+|.||+|+
T Consensus 52 pv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma~~lP~~~~~~~~ 131 (761)
T KOG2262|consen 52 PVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMAKTLPTWKFGLGG 131 (761)
T ss_pred cchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHHHhCCceeeecCc
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred -----CCCCCCCcchhhhhhhhhhhcccccccccccceeccchhhhHhhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 005963 86 -----FSTKPFTRQENTVIQTCVVACYGLAASGGFGSSFLAMDKRTYKLIGTEYPGNRAEDVKNPGLGWMIVFMFVVSFV 160 (667)
Q Consensus 86 -----~npgpf~~kE~~liq~~as~~~~~a~a~~~~~~i~a~~~l~y~~lg~~~~~~~p~~~~~~~~~~~i~~~l~~~ll 160 (667)
+||||||.|||+++++++|+++|.+|+. .|....+.||+ ++.++++++++++++|++
T Consensus 132 ~~~fslNPGPFn~KEHvlitIfan~~sg~aYat----~Ii~~~k~fY~--------------~~l~f~~~~ll~lttQ~l 193 (761)
T KOG2262|consen 132 RWSFSLNPGPFNVKEHVLITIFANIGSGTAYAT----HIITAQKAFYK--------------RNLSFGYAFLLVLTTQLL 193 (761)
T ss_pred ceEEEeCCCCCcchheeeeehhhhccCcchhhh----HHHHHHHHHHh--------------ccccHHHHHHHHHHHHHh
Confidence 3999999999999999999998888763 45555555573 357899999999999999
Q ss_pred HHHHHHHhhhheeccCCCcCchhhHHHHHHhhhccCCccccc-chhHHHHHHHHHHHHHHHhh-hhhhcccC---Ccccc
Q 005963 161 GLFSLVALRKVMILDGKLTYPSGTATAVLINGFHTNAGAELA-GMQVRCIGKYLSISFLCSSF-KWFFSGVG---DSCGF 235 (667)
Q Consensus 161 G~~~Ag~lRr~lV~p~~l~wP~~la~a~l~~alh~~~~~~~~-~~~~~~f~~~f~~~fi~~~~-~~i~p~l~---~~c~~ 235 (667)
|||+||++||++|+|++|.||++|++++|+|+||++|+.+++ .+|+|||.++|.+||+|+|+ +|++|.|+ +.||.
T Consensus 194 GyGwAGl~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~ 273 (761)
T KOG2262|consen 194 GYGWAGLFRKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWI 273 (761)
T ss_pred cccHhhhhHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEe
Confidence 999999999999999999999999999999999986654444 68999999999999999998 79999988 57876
Q ss_pred cccc-----c----ccccccCcceEeeccc--ccccccccccHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCCCC--
Q 005963 236 DNFP-----S----FGLILFKNTFYFDFSP--TYVGCGLICPRIVNCSVLLGAIVSWGFLWPYISQHAGDWYPADLGN-- 302 (667)
Q Consensus 236 ~~~~-----~----~G~~~~~~~~t~dws~--~~ig~gll~p~~~~~~~~~G~vl~~~ii~P~~~~~~~~w~p~~~~~-- 302 (667)
.+-. + .|++. .++||||+. +|+|+|+..|+++.+|.++|.++..+|++|++|+. |.|+..++|.
T Consensus 274 ~P~s~~~~qi~sg~~GLGi--~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~-n~~~a~~fPI~S 350 (761)
T KOG2262|consen 274 WPSSITANQIGSGLTGLGI--GPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWT-NTYDAKYFPIFS 350 (761)
T ss_pred ccccHHHHHhccccccccc--ccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhc-cceecceeceec
Confidence 4211 2 34444 678999996 58999999999999999999999999999999997 8886555542
Q ss_pred ------------------CCc-ccchhhH----HHHHHHHHHHHHH--HHHHHHH----HHHHHHHHHHhhhcCCCCCCc
Q 005963 303 ------------------SDF-KGLYGYK----VFIAISLILGDGL--YNLIKII----SVTFKELCNKRTKVSKLPIDN 353 (667)
Q Consensus 303 ------------------~~~-~~~~~y~----~~~~~~~~~~~g~--~~l~~~~----~~~~~~~~~~~~~~~~~~~~~ 353 (667)
+++ .|.++|+ .|+++.+.+++|+ .++...+ ..++||+|++.|+..+
T Consensus 351 s~lf~~tG~sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~~~~~----- 425 (761)
T KOG2262|consen 351 SSLFDHTGNSYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTKKAFN----- 425 (761)
T ss_pred CcceecCCcEeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHHhccc-----
Confidence 111 2445676 4788888888873 4443333 3468999998886542
Q ss_pred cccccchhhhhhhhhhhhcccccCCCchHHHHHHHHHHHHHHHhhcccccC--CchHHHHHHHHHHHHHHHhhhhhheee
Q 005963 354 EIQDTESSRLLIDQKKRENVFLKDGIPTWFAASGYVGLAAISTATIPTIFP--PLKWYLVLLLYLIAPALAFCNSYGAGL 431 (667)
Q Consensus 354 ~~~~~~~~~~~~~d~~~~~~~~y~~vP~ww~~~~lvv~~~~~~~~~~~~~~--~~p~w~~~lai~l~~v~~~~~~~~~g~ 431 (667)
..+|.|++.|+||||||+|||++.+++++++++++.+++.+ |+|||++++|+++++++.+|.|.++|+
T Consensus 426 ----------k~~DiHtrlMkkYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~At 495 (761)
T KOG2262|consen 426 ----------KKMDIHTRLMKKYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQAT 495 (761)
T ss_pred ----------cCCCHHHHHHHHhccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhh
Confidence 34678876678899999999999999999999999999987 899999999999999999999999999
Q ss_pred cCCCcccchhHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHH
Q 005963 432 TDCSLSLTYAKIGLFIIASLVGTNGGVIAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLLGTAMGCVFAP 511 (667)
Q Consensus 432 tg~~p~~~l~~i~~li~g~~~g~pg~~~a~l~~~~~~~~~~~qA~~~~~DlK~G~y~~~pPr~~f~~Ql~G~ivg~~v~~ 511 (667)
||++| ++|+++|+|+||+. ||+|+|||+||.+|+.++.||.+++||+|+|||||+|||.||.+|++||+++++|+.
T Consensus 496 TNq~~--GLNiitE~i~Gy~~--PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~ 571 (761)
T KOG2262|consen 496 TNQTP--GLNIITEYIIGYIY--PGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNL 571 (761)
T ss_pred ccCCc--cHHHHHHHHHHhhc--CCchHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeH
Confidence 99885 79999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHhcccccCCC--CCCCCCcHHHHHHHHHhh-hcccCCCCchh--hhhHHHHHHHHHHHHHHH----hhhcccc-
Q 005963 512 LT-FWMYWTAFDIGSP--DGPYKAPYAVILREMAIL-GIEGFSELPKH--CLALCCGFFVAALVINLL----RDVIPEK- 580 (667)
Q Consensus 512 ~v-~~~~~~~~~i~~~--~~~f~~P~a~~~~~~s~~-g~~G~~~l~~~--~~~~~~~~~~~g~~l~ll----~~~~p~~- 580 (667)
++ .|++.++.|+|++ +++||||+.++++++|++ |.+||++++.+ .+..+.++|++|++.|++ .+.+||+
T Consensus 572 gv~~W~m~~I~~iC~~~~~s~~TCP~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~k~fPk~~ 651 (761)
T KOG2262|consen 572 GVAWWLMYSIPNICTTDQNSPWTCPSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQKKFPKKK 651 (761)
T ss_pred HhHHHHHhcccccccCCCCCCccCCCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHHHHHHhcchhh
Confidence 99 6788889999984 478999999999999999 99999765432 122223366666666655 4556664
Q ss_pred cccccchhhhhhcccccch----hhHHHHHHHHHHHHHHHHhcccccccccceehhhHHhhHHhHHHHHH-HHHhcCCCC
Q 005963 581 ISKFIPVPMAMAIPFFVGA----YLAIDMFVGTVILFIWERINRKDSEDYAGAVASGLICGDGIWTMPSA-VLSIFSINP 655 (667)
Q Consensus 581 ~~~~~P~~~~~~~~~~~p~----~~~~~~~vG~~~~~~~~r~~~~~~~ky~y~laagL~aG~al~gvii~-~l~~~gv~~ 655 (667)
|.+.++.|+.++....+|| +|++|+.+|.++++++|||++.||+||||++|||||||.++++++++ +++..|++.
T Consensus 652 w~~~i~~pvl~gg~~~mPpat~vny~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv~~~~~~~ 731 (761)
T KOG2262|consen 652 WIKQINPPVLFGGTANMPPATAVNYTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQYPGISL 731 (761)
T ss_pred hhhccCcceEecccccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhheeccCCCcc
Confidence 3454444788887777775 78999999999999999999999999999999999999999999996 488888876
Q ss_pred C
Q 005963 656 P 656 (667)
Q Consensus 656 ~ 656 (667)
+
T Consensus 732 ~ 732 (761)
T KOG2262|consen 732 N 732 (761)
T ss_pred c
Confidence 4
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=3.8e-118 Score=1011.57 Aligned_cols=600 Identities=17% Similarity=0.212 Sum_probs=513.6
Q ss_pred cchhhhhcccCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhccccCccchhHHHHHHHHHHHHHHHHHhhhccC------
Q 005963 12 IEKITAEEDQLIPEWKDQITIRGLAVSAIMGTLFCIITHRLNLTVGIIPSLNIAAGLLGFLSVKSWTSFLSKLG------ 85 (667)
Q Consensus 12 ~~~~~~~~~~~~~~~~p~lT~Ra~~lG~il~~v~a~~n~~~~lr~g~~~~~si~~~ils~~~~~~~~~~lp~~~------ 85 (667)
.+|||++++..|||++|++|+|+|++|++++++++++|++|++|+|+++.+++++|+++|++||+|+|++|+++
T Consensus 6 ypeVr~~v~~~DDp~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~~~~g~ 85 (681)
T TIGR00727 6 YPEVRAAVPPTDDPTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTITIRGR 85 (681)
T ss_pred chhhhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCccccccccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ---CCCCCCCcchhhhhhhhhhhcccccccccccceeccchhhhHhhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHH
Q 005963 86 ---FSTKPFTRQENTVIQTCVVACYGLAASGGFGSSFLAMDKRTYKLIGTEYPGNRAEDVKNPGLGWMIVFMFVVSFVGL 162 (667)
Q Consensus 86 ---~npgpf~~kE~~liq~~as~~~~~a~a~~~~~~i~a~~~l~y~~lg~~~~~~~p~~~~~~~~~~~i~~~l~~~llG~ 162 (667)
+||||||+|||+++|+|||++.+.+++. .++.++..+ | + ++.++++++++++++|++|+
T Consensus 86 ~~~lNPGPF~~KEh~liti~a~~~~~~~y~~---~~i~~~~~f-y---~-----------~~~~~g~~il~~lstq~~G~ 147 (681)
T TIGR00727 86 KYNIIPGPFNVKEHMFITLMYAVSFGAAYTT---DIILAQKLF-Y---K-----------SAFGFGYQFLLSLSTQFIGF 147 (681)
T ss_pred eeccCCCCCChhcceeeeeeeehhccHHHHH---HHHHHHHHH-h---C-----------CCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999998777753 466677665 6 3 24589999999999999999
Q ss_pred HHHHHhhhheeccCCCcCchhhHHHHHHhhhccCCccc--ccc-hhHHHHHHHHHHHHHHHhh-hhhhcccC---Ccccc
Q 005963 163 FSLVALRKVMILDGKLTYPSGTATAVLINGFHTNAGAE--LAG-MQVRCIGKYLSISFLCSSF-KWFFSGVG---DSCGF 235 (667)
Q Consensus 163 ~~Ag~lRr~lV~p~~l~wP~~la~a~l~~alh~~~~~~--~~~-~~~~~f~~~f~~~fi~~~~-~~i~p~l~---~~c~~ 235 (667)
++||++||++|+|++|+||+++++++|+|+||++++.+ +|+ +|+|+|+++|.++|+|+|+ .|++|.|+ +.||.
T Consensus 148 g~Ag~lRr~lV~p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi 227 (681)
T TIGR00727 148 GFAGILRRFVVYPARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWI 227 (681)
T ss_pred HHHHHhhceEeccccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhc
Confidence 99999999999999999999999999999999855332 333 7999999999999999998 69999888 57877
Q ss_pred cccc-----ccc----ccccCcc-eEeecccc--cccccccccHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCCCCC
Q 005963 236 DNFP-----SFG----LILFKNT-FYFDFSPT--YVGCGLICPRIVNCSVLLGAIVSWGFLWPYISQHAGDWYPADLGNS 303 (667)
Q Consensus 236 ~~~~-----~~G----~~~~~~~-~t~dws~~--~ig~gll~p~~~~~~~~~G~vl~~~ii~P~~~~~~~~w~p~~~~~~ 303 (667)
.+-. ++| ++. .+ +|||||.. +.|+|+++|+|+++|+++|.++++++++|++||+ |.|+..++|..
T Consensus 228 ~P~n~~~~~i~g~~~GlGl--~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy~-N~w~~~~lPi~ 304 (681)
T TIGR00727 228 KPNNINLNQIFGGSTGLGI--NPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYYS-NTWYCQYLPIS 304 (681)
T ss_pred cCcchhhhhhhccccCCCc--CCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccccCCc
Confidence 5321 333 333 56 89999963 5789999999999999999999999999999996 89987776642
Q ss_pred C--------------------c-ccchhhH----HHHHHHHHHHHHH--HHH----HHHHHHHHHHHHHHhhhcCCCCCC
Q 005963 304 D--------------------F-KGLYGYK----VFIAISLILGDGL--YNL----IKIISVTFKELCNKRTKVSKLPID 352 (667)
Q Consensus 304 ~--------------------~-~~~~~y~----~~~~~~~~~~~g~--~~l----~~~~~~~~~~~~~~~~~~~~~~~~ 352 (667)
+ + .|.+||+ .|++++.++.+|+ +.+ ......++||+++++|+.
T Consensus 305 s~~~fd~~G~~Y~vs~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i~~~~~~~------ 378 (681)
T TIGR00727 305 SNGLYDNFGHSYNVTEILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLLFNALKDD------ 378 (681)
T ss_pred cchhhhcCCCccccceeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC------
Confidence 1 0 2345676 3788888888875 332 333456899999887642
Q ss_pred ccccccchhhhhhhhhhhhcccccCCCchHHHHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHhhhhhheeec
Q 005963 353 NEIQDTESSRLLIDQKKRENVFLKDGIPTWFAASGYVGLAAISTATIPTIFPPLKWYLVLLLYLIAPALAFCNSYGAGLT 432 (667)
Q Consensus 353 ~~~~~~~~~~~~~~d~~~~~~~~y~~vP~ww~~~~lvv~~~~~~~~~~~~~~~~p~w~~~lai~l~~v~~~~~~~~~g~t 432 (667)
+.||+|.+.|++|||||+|||++++++++++++++++.+++++|||++++++++++++.+|.+++.|+|
T Consensus 379 -----------~~~D~h~rlM~~Y~evP~WWy~~~l~is~~~~~~~v~~~~t~lP~W~~~lal~l~~i~~iP~~~i~a~t 447 (681)
T TIGR00727 379 -----------DYPDPHSNLMKAYKEVPDWWYLAVFLGFFGMGIATVEHWPTETPVWGLFVCLIFNFVFLIPTTILQATT 447 (681)
T ss_pred -----------CCCChhHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhhhheEeec
Confidence 246788766799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccchhHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 005963 433 DCSLSLTYAKIGLFIIASLVGTNGGVIAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLLGTAMGCVFAPL 512 (667)
Q Consensus 433 g~~p~~~l~~i~~li~g~~~g~pg~~~a~l~~~~~~~~~~~qA~~~~~DlK~G~y~~~pPr~~f~~Ql~G~ivg~~v~~~ 512 (667)
|++ .++|+++|+|.|+++ ||||+|||+||++++++.+||.+++||||+|||+|+|||+||++|++|+++|++|+++
T Consensus 448 ~~~--~~ln~l~eli~Gy~~--PG~p~a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~ 523 (681)
T TIGR00727 448 NIS--FGLNVLTEFIVGYAL--PGRPLAMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIG 523 (681)
T ss_pred CCc--cchhHHHHHHhhhcc--CCCchHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 998 479999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHhcccccCCCC--CCCCCcHHHHHHHHHhh-hcccCCCCchh--hhhHHHHHHHHHHHHHH----Hhhhcccccc
Q 005963 513 TF-WMYWTAFDIGSPD--GPYKAPYAVILREMAIL-GIEGFSELPKH--CLALCCGFFVAALVINL----LRDVIPEKIS 582 (667)
Q Consensus 513 v~-~~~~~~~~i~~~~--~~f~~P~a~~~~~~s~~-g~~G~~~l~~~--~~~~~~~~~~~g~~l~l----l~~~~p~~~~ 582 (667)
++ +++.+++|+|+++ ++|+||++++++++|++ |.+||++++.+ .+....+++++|+++++ ++|++||++.
T Consensus 524 v~~~~l~~i~~~c~~~~~~~ftcp~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~~~~r~~P~~~~ 603 (681)
T TIGR00727 524 VLNWAIGNIDNFCTADQNAKYTCPNAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFWLVWKKWPKFYP 603 (681)
T ss_pred HHHHHHhcCcccCCCCCCCCccCCCccceeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 95 6778889999865 78999999999999998 89998555431 12233345666666655 5566677666
Q ss_pred cccchhhhhhcccccch----hhHHHHHHHHHHHHHHHHhcccccccccceehhhHHhhHHhHHHHHH-HHHhcCC
Q 005963 583 KFIPVPMAMAIPFFVGA----YLAIDMFVGTVILFIWERINRKDSEDYAGAVASGLICGDGIWTMPSA-VLSIFSI 653 (667)
Q Consensus 583 ~~~P~~~~~~~~~~~p~----~~~~~~~vG~~~~~~~~r~~~~~~~ky~y~laagL~aG~al~gvii~-~l~~~gv 653 (667)
|+++.|+.++....+|+ ++..+..+|.++++++||||++||+||||++|||||+|+++++++++ .++..|+
T Consensus 604 ~~~n~pv~~~~~g~~~~a~~~n~~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iiff~v~~~~~ 679 (681)
T TIGR00727 604 RYLDWPMLFVGTGYIPPATPYNYMYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIFFCLQLKDT 679 (681)
T ss_pred hhCCccHHHhhccccCCcchhhHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHheeEEEeCCC
Confidence 67666777776344443 36778899999999999999999999999999999999999999996 3665554
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=1.5e-101 Score=892.85 Aligned_cols=588 Identities=25% Similarity=0.384 Sum_probs=466.8
Q ss_pred chhhhhcccCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhccccCccchhHHHHHHHHHHHHHHHHHhhhcc-----CCC
Q 005963 13 EKITAEEDQLIPEWKDQITIRGLAVSAIMGTLFCIITHRLNLTVGIIPSLNIAAGLLGFLSVKSWTSFLSKL-----GFS 87 (667)
Q Consensus 13 ~~~~~~~~~~~~~~~p~lT~Ra~~lG~il~~v~a~~n~~~~lr~g~~~~~si~~~ils~~~~~~~~~~lp~~-----~~n 87 (667)
+|||+ ++..|||++|++|+|+|++|++++++++++|+|+++|+|+++.+++++|+++|+++|.|+|++|+| .+|
T Consensus 1 ~~vra-v~~~ddp~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~~~~~~ln 79 (654)
T TIGR00728 1 QEVRA-VPPTDDPSLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWEGWKFSLN 79 (654)
T ss_pred Ccccc-CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCccccceecC
Confidence 49999 999999999999999999999999999999999999999999999999999999999999999986 579
Q ss_pred CCCCCcchhhhhhhhhhhcccccccccccceeccchhhhHhhhCCCCCCCCCCCCCCCchHHHHHHHHHHHH--HHHHHH
Q 005963 88 TKPFTRQENTVIQTCVVACYGLAASGGFGSSFLAMDKRTYKLIGTEYPGNRAEDVKNPGLGWMIVFMFVVSF--VGLFSL 165 (667)
Q Consensus 88 pgpf~~kE~~liq~~as~~~~~a~a~~~~~~i~a~~~l~y~~lg~~~~~~~p~~~~~~~~~~~i~~~l~~~l--lG~~~A 165 (667)
|||||+||||++||+||++++.+++ ...++++..+ | + .+.++++++++++++|+ +|+++|
T Consensus 80 pgpft~kE~~~iq~~asa~~~~~~~---~~~i~a~~~~-~---~-----------~~~~~~~~~l~~~~~~~~~lG~~~a 141 (654)
T TIGR00728 80 PGPFNVKENNLIQTAASACGGLAYA---IFILPAQKMF-Y---T-----------SNFSWGYQILLVWSTQLGFLGFGFA 141 (654)
T ss_pred CCCCChhhheeEEeeeeccccHHHH---HHHHHHHHHH-c---C-----------CCCCHHHHHHHHHHHHHHHhHHhhH
Confidence 9999999999999999999877653 3677787655 4 2 13467888888777777 999999
Q ss_pred HHhhhheeccCCCcCchhhHHHHHHhhhccCCc-cccc---chhHHHHHHHHHHHHHHHhhhhhhcccCCcccccccccc
Q 005963 166 VALRKVMILDGKLTYPSGTATAVLINGFHTNAG-AELA---GMQVRCIGKYLSISFLCSSFKWFFSGVGDSCGFDNFPSF 241 (667)
Q Consensus 166 g~lRr~lV~p~~l~wP~~la~a~l~~alh~~~~-~~~~---~~~~~~f~~~f~~~fi~~~~~~i~p~l~~~c~~~~~~~~ 241 (667)
+++||++|+|++|+||+++|+++++|+||++.. .+++ |.....+...|..++.|.|+.|++|... .++++
T Consensus 142 ~~lRr~lV~~~~l~~P~~la~a~l~~al~~~~~~~~g~~~~r~l~~~~~~~f~~~~~~~~~~~~~p~~~------~~~~f 215 (654)
T TIGR00728 142 GLLRRALVVPAKLPWPSGLATAELFKALHGKFHTANGDTIAKNLLRVLLKYFSSSFLWSFVSWFFPGFT------AFQTF 215 (654)
T ss_pred HHhhhheeCcccccCCcccHHHHHHHHhhhccCccCCCccchhHHHhHHHHHHHHHHHHHHHHHhcCCc------ccccc
Confidence 999999999999999999999999999865321 1222 2223345567888899999999988722 22345
Q ss_pred c-ccccCcceEeeccc--ccccccccccHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCCCCCCcccc----------
Q 005963 242 G-LILFKNTFYFDFSP--TYVGCGLICPRIVNCSVLLGAIVSWGFLWPYISQHAGDWYPADLGNSDFKGL---------- 308 (667)
Q Consensus 242 G-~~~~~~~~t~dws~--~~ig~gll~p~~~~~~~~~G~vl~~~ii~P~~~~~~~~w~p~~~~~~~~~~~---------- 308 (667)
| .+. .+++|||+. +++|+|+++|+++++|+++|++++|+++.|++||+ |.|..++.|+.+....
T Consensus 216 gglg~--~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~~-n~~~~~~~p~~s~~~~~~~~~~y~~~ 292 (654)
T TIGR00728 216 GGLGS--GSIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYYK-NTWPADADPIDSSSTIDSTGVRYNSV 292 (654)
T ss_pred ccccc--cccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhc-CccccccCCCcchhhhcCCCceeeee
Confidence 4 333 456787774 57899999999999999999999999999999886 7775444443211111
Q ss_pred -------------hhhHH----HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhcCCCCCCccccccchhhhhhhh
Q 005963 309 -------------YGYKV----FIAISLILGDGLY----NLIKIISVTFKELCNKRTKVSKLPIDNEIQDTESSRLLIDQ 367 (667)
Q Consensus 309 -------------~~y~~----~~~~~~~~~~g~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 367 (667)
.+|+. |.+.+. ....+. .+......+.|++++++|+.++... +. +++ ..++++|
T Consensus 293 ~~il~~~~~~l~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~--~~~-~~~~~~d 367 (654)
T TIGR00728 293 GLIVVDGLWTLVKPLYPIYSPLVLSIDF-YALLFNAFSDTIYSFALAHGRDIISARRDHYKLGR-DD--HVR-LLSRDED 367 (654)
T ss_pred eEEEeCCCceecHHHHHHhCcceeeHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccC-CC--ChH-HHhhccc
Confidence 12321 222222 111111 1122334466777776654432100 00 000 1111112
Q ss_pred hhhhcccccCCCchHHHHHHHHHHHHHHHhhccccc--CCchHHHHHHHHHHHHHHHhhhhhheeecCCCcccchhHHHH
Q 005963 368 KKRENVFLKDGIPTWFAASGYVGLAAISTATIPTIF--PPLKWYLVLLLYLIAPALAFCNSYGAGLTDCSLSLTYAKIGL 445 (667)
Q Consensus 368 ~~~~~~~~y~~vP~ww~~~~lvv~~~~~~~~~~~~~--~~~p~w~~~lai~l~~v~~~~~~~~~g~tg~~p~~~l~~i~~ 445 (667)
+ +|++|+|||+|||+.++++++++++++++.++ +++|||++++++++++++++|.++++|+| ||.+++++++|
T Consensus 368 ~---~~~~~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~t--np~~~l~~~~~ 442 (654)
T TIGR00728 368 L---KVKNYKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGIT--NPVSGLNIITE 442 (654)
T ss_pred c---cccccCcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEee--cccchhhHHHH
Confidence 2 25779999999999999999999998888776 68999999999999999999999999999 67789999999
Q ss_pred HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 005963 446 FIIASLVGTNGGVIAGLAACGVMMSIVSTAADLMQDFKTGYLTLSSAKSMFVSQLLGTAMGCVFAPLTFWMYWTAFDIGS 525 (667)
Q Consensus 446 li~g~~~g~pg~~~a~l~~~~~~~~~~~qA~~~~~DlK~G~y~~~pPr~~f~~Ql~G~ivg~~v~~~v~~~~~~~~~i~~ 525 (667)
+++|+++ ||++++||+++++++++++||+|++||||+|||+|+|||+||++|++|+++|+++++++++++.++++.
T Consensus 443 li~g~~~--pg~~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~-- 518 (654)
T TIGR00728 443 LIIGYIL--PGRPLANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWLYHAIGN-- 518 (654)
T ss_pred Hhheeec--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999988888876
Q ss_pred CCCCCCCcHHHHHHHHHhh-hcccCCCCc-----hhhhhHHHHHHHHH---HHHHHHhhhcccccccccchhhhhhcccc
Q 005963 526 PDGPYKAPYAVILREMAIL-GIEGFSELP-----KHCLALCCGFFVAA---LVINLLRDVIPEKISKFIPVPMAMAIPFF 596 (667)
Q Consensus 526 ~~~~f~~P~a~~~~~~s~~-g~~G~~~l~-----~~~~~~~~~~~~~g---~~l~ll~~~~p~~~~~~~P~~~~~~~~~~ 596 (667)
++++|+||++.+|+++|++ +.+||+ +. |..+.+ ++++| ++..+.+++.|| +++++|++++++++++
T Consensus 519 ~~~~~~~p~a~~~~~aa~~~g~~Gp~-~f~~~~~y~~~~~---~~l~G~~~i~~~~~~~~~p~-~~~~~~~~~~~~~~~~ 593 (654)
T TIGR00728 519 QNNNFTCPNALVFYNASLIWGVIGPK-IFSGKGLYCGLMW---FFLVGVGAVLVWLVRKLFPK-WIKYINPPVAVGGGGY 593 (654)
T ss_pred CCCCccCCcccchhhheeeeccccch-hcCCCCccHHHHH---HHHHHHHHHHHHHHHHHccc-hhhhcCHHHhhhhhhc
Confidence 3568999999999999988 778853 32 332333 55555 223333444454 5677888999999999
Q ss_pred cchhhHHHHH----HHHHHHHHHHHhccccc--ccccceehhhHHhhHHhHHHHHHH
Q 005963 597 VGAYLAIDMF----VGTVILFIWERINRKDS--EDYAGAVASGLICGDGIWTMPSAV 647 (667)
Q Consensus 597 ~p~~~~~~~~----vG~~~~~~~~r~~~~~~--~ky~y~laagL~aG~al~gvii~~ 647 (667)
+|+++++.++ +|++++++||||+++|| +||||++||||||||+|++++++.
T Consensus 594 lp~~~~~~~~~~~~vG~~~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gviiff 650 (654)
T TIGR00728 594 IPPATAVNYSTWAAVGGFFNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGVIIFF 650 (654)
T ss_pred cCCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHH
Confidence 9988887777 99999999999988876 999999999999999999999964
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=3.2e-100 Score=880.00 Aligned_cols=586 Identities=26% Similarity=0.402 Sum_probs=490.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhccccCccchhHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchhhhhhhhhhhccc
Q 005963 29 QITIRGLAVSAIMGTLFCIITHRLNLTVGIIPSLNIAAGLLGFLSVKSWTSFLSKLGFSTKPFTRQENTVIQTCVVACYG 108 (667)
Q Consensus 29 ~lT~Ra~~lG~il~~v~a~~n~~~~lr~g~~~~~si~~~ils~~~~~~~~~~lp~~~~npgpf~~kE~~liq~~as~~~~ 108 (667)
|+|+|++++|++++++++++|+|+++|+|+++.+++++|+++|+++|.++|..++..+||||||+||||++|++||++++
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~~~~~~ln~gp~~~kE~~~vq~~asa~~~ 80 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARIGWRFSLNPGPFTIKENNLVQTMASAAGG 80 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhhccccccCCCCCCHHHHHHHHHHHHHhhh
Confidence 78999999999999999999999999999999999999999999999999977777889999999999999999999988
Q ss_pred ccccccccceeccchhhhHhhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhheeccCCCcCchhhHHHH
Q 005963 109 LAASGGFGSSFLAMDKRTYKLIGTEYPGNRAEDVKNPGLGWMIVFMFVVSFVGLFSLVALRKVMILDGKLTYPSGTATAV 188 (667)
Q Consensus 109 ~a~a~~~~~~i~a~~~l~y~~lg~~~~~~~p~~~~~~~~~~~i~~~l~~~llG~~~Ag~lRr~lV~p~~l~wP~~la~a~ 188 (667)
.++++++ +.++|...| ++ .+.++++++++++++|++|+++|+++||++|+|++|+||+++|+++
T Consensus 81 ~~~a~~~---i~~ipa~~~--~~-----------~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~ 144 (624)
T PF03169_consen 81 MAYAAGF---IAAIPALLF--LG-----------QPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAE 144 (624)
T ss_pred hhhhhhH---HHHHHHHHH--hc-----------cchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHH
Confidence 7766544 334333322 13 2457889999999999999999999999999999999999999999
Q ss_pred HHhhhccCCcccccchhHHHHHHHHHHHHHHHhh-hhhhcccC---Ccccccccc-cccccccCcceEeecccccccccc
Q 005963 189 LINGFHTNAGAELAGMQVRCIGKYLSISFLCSSF-KWFFSGVG---DSCGFDNFP-SFGLILFKNTFYFDFSPTYVGCGL 263 (667)
Q Consensus 189 l~~alh~~~~~~~~~~~~~~f~~~f~~~fi~~~~-~~i~p~l~---~~c~~~~~~-~~G~~~~~~~~t~dws~~~ig~gl 263 (667)
+++++|++++.+++++|+|+|.++|.++++|+|+ .+++|.|+ ..||..+.. ..+.-.+++.++||||++++|+|+
T Consensus 145 ~i~alh~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~dws~~~~g~g~ 224 (624)
T PF03169_consen 145 LINALHSGGGWREAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWSFSFDWSPILIGSGL 224 (624)
T ss_pred HHHHhccCccchhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccceeeEeecHHhcCCCe
Confidence 9999998664456778999999999999999996 68888766 467654321 111111235699999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCCCCCCc---------ccchhhHHHHHHHHHHHHHHHHH------
Q 005963 264 ICPRIVNCSVLLGAIVSWGFLWPYISQHAGDWYPADLGNSDF---------KGLYGYKVFIAISLILGDGLYNL------ 328 (667)
Q Consensus 264 l~p~~~~~~~~~G~vl~~~ii~P~~~~~~~~w~p~~~~~~~~---------~~~~~y~~~~~~~~~~~~g~~~l------ 328 (667)
++|+++++|+++|.+++|+++.|++++++|.|.+.++|..+. +...+|.+|.+++.+...+...+
T Consensus 225 i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~ 304 (624)
T PF03169_consen 225 IVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGSSDGTLNWTKYIGYGPMYGSGLFALSYGWSF 304 (624)
T ss_pred eccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCccccccCHHHHHHHHHHHHhHHHHHhhcccc
Confidence 999999999999999999999999988768887777663210 22335778999999888876655
Q ss_pred H-------HHHHHHHHHHHHHhhhcCCCCCCccccccchhhhhhhhhhhhcccccCCCchHHHHHHHHHHHHHHHhhccc
Q 005963 329 I-------KIISVTFKELCNKRTKVSKLPIDNEIQDTESSRLLIDQKKRENVFLKDGIPTWFAASGYVGLAAISTATIPT 401 (667)
Q Consensus 329 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~y~~vP~ww~~~~lvv~~~~~~~~~~~ 401 (667)
. +.+.++.|++++++++.+++. ++.++++||+|+++|++|+|+|+|||+.++++++++++++++.
T Consensus 305 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~~~~~~~~ 376 (624)
T PF03169_consen 305 AALTASIVHAILWHWKAIWQAFKQSKSSQ--------RSSKSSEDDPHYRLMRTYKEVPMWWYLAGLVVSFVLAIIVVEA 376 (624)
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhcccc--------cccccccCCchhhhhhhcCCcchHHHHHHHHHHHHHHHHHHhh
Confidence 2 223345666666554432211 1122356788888889999999999999999999999999999
Q ss_pred cc--CCchHHHHHHHHHHHHHHHhhhhhheeecCCCcccchhHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHhh
Q 005963 402 IF--PPLKWYLVLLLYLIAPALAFCNSYGAGLTDCSLSLTYAKIGLFIIASLVGTNGGVIAGLAACGVMMSIVSTAADLM 479 (667)
Q Consensus 402 ~~--~~~p~w~~~lai~l~~v~~~~~~~~~g~tg~~p~~~l~~i~~li~g~~~g~pg~~~a~l~~~~~~~~~~~qA~~~~ 479 (667)
++ +++|+|+.++++++++++++|.++++|+||+||.+++++++|+++|++. |+++++||+++++++++++||+|++
T Consensus 377 ~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~--pg~~~a~l~~~~~~~~~~~qa~~~~ 454 (624)
T PF03169_consen 377 WFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLL--PGNPIANLLFGGYGYAAASQAGDLM 454 (624)
T ss_pred hhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88 7899999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC---CCCCCCcHHHHHHHHHhhhcccC-CCCchh
Q 005963 480 QDFKTGYLTLSSAKSMFVSQLLGTAMGCVFAPLTFWMYWTAFDIGSP---DGPYKAPYAVILREMAILGIEGF-SELPKH 555 (667)
Q Consensus 480 ~DlK~G~y~~~pPr~~f~~Ql~G~ivg~~v~~~v~~~~~~~~~i~~~---~~~f~~P~a~~~~~~s~~g~~G~-~~l~~~ 555 (667)
||||+|||+|+|||+||++|++|+++|+++++++++++++.|....+ ++.+++|++..|.+++. +..|+ .+++++
T Consensus 455 ~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~~~~~~~~~~~~~~~~~~ap~a~~~aav~~-g~~~~~~~~~~~ 533 (624)
T PF03169_consen 455 QDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLLNQAYPCGPDQGDSFSCPAPQAFAWAAVAW-GLIGPQRGLPYS 533 (624)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCcCcchHHHHHHHHHH-HhcCCcccchHH
Confidence 99999999999999999999999999999999999988555544322 35566667777766654 44554 245666
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcccccccccchhhhhh----cccccchhhHHHHHHHHHHHHHHHHhcccccccccceeh
Q 005963 556 CLALCCGFFVAALVINLLRDVIPEKISKFIPVPMAMA----IPFFVGAYLAIDMFVGTVILFIWERINRKDSEDYAGAVA 631 (667)
Q Consensus 556 ~~~~~~~~~~~g~~l~ll~~~~p~~~~~~~P~~~~~~----~~~~~p~~~~~~~~vG~~~~~~~~r~~~~~~~ky~y~la 631 (667)
.+ .+++++|++++++.++.+ |++|.+++++ +++++|+++++++++|+++++++|||+++||+||||++|
T Consensus 534 ~~---~~~~~~G~~~~i~~~l~~----~~~P~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~y~~~la 606 (624)
T PF03169_consen 534 AL---PWGFLIGAVLPILFWLLQ----RKFPSPLAFGGASSIGFYLPSNYTSAIFIGGLFQFYWRRRYPKWWEKYNYVLA 606 (624)
T ss_pred HH---HHHHHHHHHHHHHHHHHH----hhCChhheeeecccccccchhHHHHHHHHHHHHHHHhhhcchhHHHhHhhHHH
Confidence 44 448889999998876653 3468778888 899999999999999999999999999999999999999
Q ss_pred hhHHhhHHhHHHHHHHH
Q 005963 632 SGLICGDGIWTMPSAVL 648 (667)
Q Consensus 632 agL~aG~al~gvii~~l 648 (667)
|||||||+|++++++++
T Consensus 607 agl~aG~~l~~li~~~~ 623 (624)
T PF03169_consen 607 AGLIAGEALMGLIIAFL 623 (624)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999864
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=1.3e-78 Score=684.57 Aligned_cols=555 Identities=18% Similarity=0.256 Sum_probs=433.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhccccCccchhHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchhhhhhhhhhhccc
Q 005963 29 QITIRGLAVSAIMGTLFCIITHRLNLTVGIIPSLNIAAGLLGFLSVKSWTSFLSKLGFSTKPFTRQENTVIQTCVVACYG 108 (667)
Q Consensus 29 ~lT~Ra~~lG~il~~v~a~~n~~~~lr~g~~~~~si~~~ils~~~~~~~~~~lp~~~~npgpf~~kE~~liq~~as~~~~ 108 (667)
|+|+|++++|++++++++++|.|++||+|+++++|+++++++|.+.|.+.| +|++|||++||+||++++
T Consensus 1 elT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~-----------~t~~EnnivQT~asA~~~ 69 (591)
T TIGR00733 1 EYTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRD-----------RSILENNMVQTAASAAGT 69 (591)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhcc-----------CChhHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999998754 699999999999999987
Q ss_pred ccccccccceeccchhhhHhhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhheeccCCCcCchhhHHHH
Q 005963 109 LAASGGFGSSFLAMDKRTYKLIGTEYPGNRAEDVKNPGLGWMIVFMFVVSFVGLFSLVALRKVMILDGKLTYPSGTATAV 188 (667)
Q Consensus 109 ~a~a~~~~~~i~a~~~l~y~~lg~~~~~~~p~~~~~~~~~~~i~~~l~~~llG~~~Ag~lRr~lV~p~~l~wP~~la~a~ 188 (667)
++ ++. ..+|.+ | ++| .|++.+++..++++++++++|+.++.||||++|.+++|+|||++|+|+
T Consensus 70 ~a---g~~---~~lPAl-~-~lg---------~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae 132 (591)
T TIGR00733 70 LS---SVI---FVLPAL-L-MLG---------YWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAE 132 (591)
T ss_pred HH---HHH---HHHHHH-H-hcC---------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHH
Confidence 64 233 344444 3 335 123457778888899999999999999999999999999999999999
Q ss_pred HHhhhccCCcccccchhHHHHHHHHHHHHHHHhhhhhhcccCCcccccccccccccccCcceEeecccccccccccccHH
Q 005963 189 LINGFHTNAGAELAGMQVRCIGKYLSISFLCSSFKWFFSGVGDSCGFDNFPSFGLILFKNTFYFDFSPTYVGCGLICPRI 268 (667)
Q Consensus 189 l~~alh~~~~~~~~~~~~~~f~~~f~~~fi~~~~~~i~p~l~~~c~~~~~~~~G~~~~~~~~t~dws~~~ig~gll~p~~ 268 (667)
++++. +++ + ++++.|.+...+..+++|.++.- ++.... ....+...|. .+..+++||||+++|.|+++|++
T Consensus 133 ~l~~g--~~g-~-~~~~~~~l~~g~~~s~~~~~~~~-~~~~~~--~~~~~~~~g~--~~~~~~~~~SpalvG~G~ivG~~ 203 (591)
T TIGR00733 133 VLKAG--DKA-R-NGTGAKPIAYGGILASIYAFLGS-LRVWSG--TLSAAKLVGR--RALYFGSDLSLALIGVGYLVGLN 203 (591)
T ss_pred HHHcc--ccc-c-chhhHHHHHHHHHHHHHHHHHHH-hccCCc--hHHHHHhcCC--cceEEEecccHHHHcCceeeChH
Confidence 99985 222 1 34567777778888888887731 111000 0000000111 12467889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcccCCCCCCCCc-ccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 005963 269 VNCSVLLGAIVSWGFLWPYISQHAGDWYPADLGNSDF-KGLY-GYKVFIAISLILGDGLYNLIKIISVTFKELCNKRTKV 346 (667)
Q Consensus 269 ~~~~~~~G~vl~~~ii~P~~~~~~~~w~p~~~~~~~~-~~~~-~y~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~ 346 (667)
+++++++|++++|+++.|++.. +.|+|.+.++.+. ..++ .|.+|+++++|+++|++++.+......+.+++.++..
T Consensus 204 v~~s~~~G~vlaWgvl~P~l~~--~~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~~~~~~~~~~~~~~~~ 281 (591)
T TIGR00733 204 IGFAMFLGGAIAWGVAIPIYTA--KMGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLKLRGPIARGIKAGLEAA 281 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cCCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999975 3677665543221 1233 3567899999999999999988777777777766654
Q ss_pred CCCCCCccccccchhhhhhhhhhhhcccccCCCchHHHHHHHHHHHHHHHhhcccccCCch--------H-HHHHHHHHH
Q 005963 347 SKLPIDNEIQDTESSRLLIDQKKRENVFLKDGIPTWFAASGYVGLAAISTATIPTIFPPLK--------W-YLVLLLYLI 417 (667)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~y~~vP~ww~~~~lvv~~~~~~~~~~~~~~~~p--------~-w~~~lai~l 417 (667)
+++ ++.+|..|+ .+|+|.||...+.++ .++. +....+ +.| + .+.++++++
T Consensus 282 ~~~-------------~~~~~~~r~----~~dip~~~v~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~la~vl 340 (591)
T TIGR00733 282 RRR-------------QAGEAVLRT----EEDLPINIVLTLVAL-FVIP--LADFLL-YAPILHNIGMAIAVMAVLMLII 340 (591)
T ss_pred ccc-------------ccccccccc----cccccHHHHHHHHHH-HHHH--HHHHhc-CCcccchhhHHHHHHHHHHHHH
Confidence 321 011122233 468998865443322 1222 111111 323 2 466788888
Q ss_pred HHHHHhhhhhheee--cCCCcccchhHHHHHHHHHhc---c-------CCchhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 005963 418 APALAFCNSYGAGL--TDCSLSLTYAKIGLFIIASLV---G-------TNGGVIAGLAACGVMMSIVSTAADLMQDFKTG 485 (667)
Q Consensus 418 ~~v~~~~~~~~~g~--tg~~p~~~l~~i~~li~g~~~---g-------~pg~~~a~l~~~~~~~~~~~qA~~~~~DlK~G 485 (667)
+++++...+|+.|+ ||.||.+++++++|++++.++ | .|++..+|++.+++.+.+++||+|++||||+|
T Consensus 341 ~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~~~~~~~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG 420 (591)
T TIGR00733 341 GFFVAAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGTGSQIPELMAATIFTAAVVCTAAAISNDNLQDLKTG 420 (591)
T ss_pred HHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccCccccchhHHHHHHHHHHHHHHHHHHHHHhHhhHhh
Confidence 99999999999999 778999999999999999997 1 14778899999999999999999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC-----CCCCCCCcHHHHHHHHHhhhcccCCCCchhhhhHH
Q 005963 486 YLTLSSAKSMFVSQLLGTAMGCVFAPLTFWMYWTAFDIGS-----PDGPYKAPYAVILREMAILGIEGFSELPKHCLALC 560 (667)
Q Consensus 486 ~y~~~pPr~~f~~Ql~G~ivg~~v~~~v~~~~~~~~~i~~-----~~~~f~~P~a~~~~~~s~~g~~G~~~l~~~~~~~~ 560 (667)
|++|++||+||++|++|+++|++++.++++++.++|++.+ |+++|++|||.+|+++++-...+ .+++. ..
T Consensus 421 ~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~ll~~ayg~~~~~~~~~~~~l~APqA~l~~ava~gi~~~--~l~~~---~i 495 (591)
T TIGR00733 421 YLVGATPWRQQVALIIGTFVGALVMAPVLNLLIKAYGIAGTPTAKGENALPAPQAFLMAAVTEGVFTG--TLEWT---MV 495 (591)
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccccCCCHHHHHHHHHhhhcCC--CccHH---HH
Confidence 9999999999999999999999999999999999998743 46789999999999998532222 33443 33
Q ss_pred HHHHHHHHHHHHHhhhcccccccc-cchhhhhhcccccchhhHHHHHHHHHHHHHHHHhcccc------cccccceehhh
Q 005963 561 CGFFVAALVINLLRDVIPEKISKF-IPVPMAMAIPFFVGAYLAIDMFVGTVILFIWERINRKD------SEDYAGAVASG 633 (667)
Q Consensus 561 ~~~~~~g~~l~ll~~~~p~~~~~~-~P~~~~~~~~~~~p~~~~~~~~vG~~~~~~~~r~~~~~------~~ky~y~laag 633 (667)
.++.++|+++.++++..+++++|+ .| ++++++|+|+|++++..+++|++++|+|+|++++. .++|++++|||
T Consensus 496 ~~ga~~g~~l~~~~~~~~~~~~~~~~p-~lavgig~yLP~~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASG 574 (591)
T TIGR00733 496 FIGAGIGIALIIIDEILAKRGSKFRTP-VMAVGVGIYLPLSLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAG 574 (591)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccCCc-hhHHHHHhhcchhHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecH
Confidence 457788889999998877665555 45 79999999999999999999999999999876532 24789999999
Q ss_pred HHhhHHhHHHHHHHHH
Q 005963 634 LICGDGIWTMPSAVLS 649 (667)
Q Consensus 634 L~aG~al~gvii~~l~ 649 (667)
|+|||+|+|++++++.
T Consensus 575 LIaGE~l~Gv~~A~~~ 590 (591)
T TIGR00733 575 LIVGESLTGVVFAAII 590 (591)
T ss_pred hhcchHHHHHHHHHHh
Confidence 9999999999998754
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.9e-63 Score=535.17 Aligned_cols=567 Identities=19% Similarity=0.264 Sum_probs=419.9
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHhhhccccCccchhHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchhhhhhh
Q 005963 22 LIPEWKDQITIRGLAVSAIMGTLFCIITHRLNLTVGIIPSLNIAAGLLGFLSVKSWTSFLSKLGFSTKPFTRQENTVIQT 101 (667)
Q Consensus 22 ~~~~~~p~lT~Ra~~lG~il~~v~a~~n~~~~lr~g~~~~~si~~~ils~~~~~~~~~~lp~~~~npgpf~~kE~~liq~ 101 (667)
+|..++||+|+|++++|+++++++.++|+|+|+|+|.++.+|++++++|+.++|.++ ++|+.|||++||
T Consensus 7 ~~~~~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~~-----------~~silENNmVQT 75 (624)
T COG1297 7 HPTAFLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVISMAVLKAFK-----------GSSILENNMVQT 75 (624)
T ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHHHHHHHhC-----------ccchhhhHHHHH
Confidence 455589999999999999999999999999999999999999999999999999865 469999999999
Q ss_pred hhhhcccccccccccceeccchhhhHhhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhhhheeccCCCcCc
Q 005963 102 CVVACYGLAASGGFGSSFLAMDKRTYKLIGTEYPGNRAEDVKNPGLGWMIVFMFVVSFVGLFSLVALRKVMILDGKLTYP 181 (667)
Q Consensus 102 ~as~~~~~a~a~~~~~~i~a~~~l~y~~lg~~~~~~~p~~~~~~~~~~~i~~~l~~~llG~~~Ag~lRr~lV~p~~l~wP 181 (667)
+||+++..+. + .|+.+|-+. ++| +|++.++.....++..++++|+.|+.||||.+|.+++++||
T Consensus 76 ~ASAagtlsa--~---vIFviPgl~--m~g---------~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyP 139 (624)
T COG1297 76 QASAAGTLSA--G---VIFVLPGLL--MLG---------YWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYP 139 (624)
T ss_pred HHhhhccccc--c---EEEechhHH--hhc---------cccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCC
Confidence 9999987652 2 455555543 234 46777886666667899999999999999999999999999
Q ss_pred hhhHHHHHHhhhccCCcccccchhHHHHHHHHHHHHHHHhhh----hhhcccCCcccccccccccccccCcceEeecccc
Q 005963 182 SGTATAVLINGFHTNAGAELAGMQVRCIGKYLSISFLCSSFK----WFFSGVGDSCGFDNFPSFGLILFKNTFYFDFSPT 257 (667)
Q Consensus 182 ~~la~a~l~~alh~~~~~~~~~~~~~~f~~~f~~~fi~~~~~----~i~p~l~~~c~~~~~~~~G~~~~~~~~t~dws~~ 257 (667)
|+.|+||++++..++|+++ +..|-..+....+.++.+.. .+...++ .+...|... ..++.+.|++
T Consensus 140 eGvAaAEvL~~g~~~~gd~---~g~~~i~~g~~~~~~~~~l~~g~~~~~~~~~------~~~~~~~~~--~~lg~~~S~A 208 (624)
T COG1297 140 EGVAAAEVLKAGNQREGDA---SGIKLIALGGALAALYSLLASGLRVIASSLS------AAFSVGRAA--FALGLGLSLA 208 (624)
T ss_pred CchhHHHHHHhcCCCCCCc---ccchhhhhhhHHHHHHHHHhccceeehhhHH------HHHHhcchh--hhhcccccHH
Confidence 9999999999987444332 22333344455556655542 1111100 001111111 3466788899
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCCCCCCc-ccchh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 005963 258 YVGCGLICPRIVNCSVLLGAIVSWGFLWPYISQHAGDWYPADLGNSDF-KGLYG-YKVFIAISLILGDGLYNLIKIISVT 335 (667)
Q Consensus 258 ~ig~gll~p~~~~~~~~~G~vl~~~ii~P~~~~~~~~w~p~~~~~~~~-~~~~~-y~~~~~~~~~~~~g~~~l~~~~~~~ 335 (667)
++|.|+++|..+.+.+++|.+++|.+..|++.+ ..|-|++.+.... ..+++ +.+|+++|.+...+++++.+.....
T Consensus 209 liG~GylvGl~~~iaml~G~~iaWgvavP~~~~--~~~~p~~~~~~~~a~~vW~s~VrfIGaG~i~i~~~wtl~~l~~pi 286 (624)
T COG1297 209 LIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTL--IVPGPSDQEAGVQAWKVWSSKVRFIGAGAIAIAAIWTLISLLGPI 286 (624)
T ss_pred HhCceEEecchHHHHHHHHHHHHHHHHHHHHHh--cccCCCchhHHHHHHHHhhheeEEeehhHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999965 3454432211000 11122 3479999999999999999888788
Q ss_pred HHHHHHHhhhcCCCCCCccccccchhhhhhhhhhhhcccccCCCchHHHHHHHHHHHHHHHhhcccccC------Cch--
Q 005963 336 FKELCNKRTKVSKLPIDNEIQDTESSRLLIDQKKRENVFLKDGIPTWFAASGYVGLAAISTATIPTIFP------PLK-- 407 (667)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~y~~vP~ww~~~~lvv~~~~~~~~~~~~~~------~~p-- 407 (667)
.|.+++.++..+.++ +.....|+| +|+|..|-...++ ...+.+.....-+. ...
T Consensus 287 ~~gi~~~f~~~r~~~-------------~~~~~~rte----~Dl~~~~~~~~~~-~~~v~l~~~~~~~l~~~~~~~~~~~ 348 (624)
T COG1297 287 LRGIKATFESARGRR-------------RAGAVSRTE----RDLPPKLVLLVLL-ATVVALGLLLAHFLRGTPLSSCRWL 348 (624)
T ss_pred HHHHHHHHHHhhccc-------------ccccccchh----hcCChhhHHHHHH-HHHHHHHHHHHhhhccCcccchhhH
Confidence 888887776554210 111111443 5888776554443 33444432211111 122
Q ss_pred --HHHHHHHHHHHHHHHhhhhhheeecCC--CcccchhHHHHHHHHHhc---c-------CC----chhHHHHHHHHHHH
Q 005963 408 --WYLVLLLYLIAPALAFCNSYGAGLTDC--SLSLTYAKIGLFIIASLV---G-------TN----GGVIAGLAACGVMM 469 (667)
Q Consensus 408 --~w~~~lai~l~~v~~~~~~~~~g~tg~--~p~~~l~~i~~li~g~~~---g-------~p----g~~~a~l~~~~~~~ 469 (667)
.-+.++++++++.++-.++++.|..|. +|.++++.+++++.+.++ | .| ....++++.+++.+
T Consensus 349 ~~~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~~~l~~l~~G~~~~~~~~~~~~~~~~~~~~~t~~vv~ 428 (624)
T COG1297 349 LVVVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTLLSLLILILGQSGGLFIDPLMRKFLVAATLFTASVVA 428 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHHhccccccccCcccchhHHHHHHHHHHHHH
Confidence 334566677788888899999999764 688888888888775554 2 12 34578899999999
Q ss_pred HHHHHHHHhhhhhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC-C---CCCCCCcHHHHHHHHHhhh
Q 005963 470 SIVSTAADLMQDFKTGYLTLSSAKSMFVSQLLGTAMGCVFAPLTFWMYWTAFDIGS-P---DGPYKAPYAVILREMAILG 545 (667)
Q Consensus 470 ~~~~qA~~~~~DlK~G~y~~~pPr~~f~~Ql~G~ivg~~v~~~v~~~~~~~~~i~~-~---~~~f~~P~a~~~~~~s~~g 545 (667)
.++.++.|.+|||||||++|++||+||.+|++|+.+|+++..+++.+++++|++.. + +.+.++||+..+.+.+
T Consensus 429 a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pvL~ll~~aYgf~ga~~r~~~~l~apqa~lma~ia--- 505 (624)
T COG1297 429 AVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPVLELLNKAYGFAGAPPRQGMDLAAPQATLMATIA--- 505 (624)
T ss_pred HHHHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCcCCCCCCCCCCCcchHHHHHHHHh---
Confidence 99999999999999999999999999999999999999999999999999999853 1 2338999999997776
Q ss_pred cccCCCCchhhhhHHH--HHHHHHHHHHHHhhhcccccccccchhhhhhcccccchhhHHHHHHHHHHHHHHHHhcc---
Q 005963 546 IEGFSELPKHCLALCC--GFFVAALVINLLRDVIPEKISKFIPVPMAMAIPFFVGAYLAIDMFVGTVILFIWERINR--- 620 (667)
Q Consensus 546 ~~G~~~l~~~~~~~~~--~~~~~g~~l~ll~~~~p~~~~~~~P~~~~~~~~~~~p~~~~~~~~vG~~~~~~~~r~~~--- 620 (667)
.|. +.+.+.|.+ .+..+|+.+..+.+..++++.++.+.++++|+|+|+|+..+.++++|++.+|.++|+.+
T Consensus 506 -~Gv---f~~~lew~mi~~g~~~gi~lI~id~~l~~~~~~~~lpvlAvGvGIylP~s~~ipi~vG~~l~~~v~~~~~~~~ 581 (624)
T COG1297 506 -KGV---FTGNLEWSMILAGAGIGIVLIGIDERLKGRGGKLRLPVLAVGVGIYLPPSLTIPIFVGGVLRWAVDRKLKKGD 581 (624)
T ss_pred -ccc---CCCCcchHHHHHHHhHhheeeeccHHHhcCCccccccceeeeeeeecChhhchHHHHHHHHHHHHHHhccccc
Confidence 332 233333433 34555555555666555555566333899999999999999999999999999998733
Q ss_pred ----cccccccceehhhHHhhHHhHHHHHHHHHhcCC
Q 005963 621 ----KDSEDYAGAVASGLICGDGIWTMPSAVLSIFSI 653 (667)
Q Consensus 621 ----~~~~ky~y~laagL~aG~al~gvii~~l~~~gv 653 (667)
+.-++.++++||||++||+|.|++++.+...+.
T Consensus 582 ~~~~e~~~r~gvl~aaGLIvGEsL~gvi~a~ii~~~g 618 (624)
T COG1297 582 ERYKERAKRIGVLFAAGLIVGESLFGVITALIIVGSG 618 (624)
T ss_pred chhhhcccceeEEEeeccccchHHHHHHHHHHheecC
Confidence 234678999999999999999999998877643
No 7
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=94.65 E-value=5.2 Score=46.61 Aligned_cols=152 Identities=17% Similarity=0.121 Sum_probs=86.6
Q ss_pred hhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcHHHHHHHHHhhhcccCCCCchhhhhHHHHHH
Q 005963 485 GYLTLSSAKSMFVSQLLGTAMGCVFAPLTFWMYWTAFDIGSPDGPYKAPYAVILREMAILGIEGFSELPKHCLALCCGFF 564 (667)
Q Consensus 485 G~y~~~pPr~~f~~Ql~G~ivg~~v~~~v~~~~~~~~~i~~~~~~f~~P~a~~~~~~s~~g~~G~~~l~~~~~~~~~~~~ 564 (667)
|+.-+.|...+...=+.|.++|.+...++++.+...+ +++-|..++-+.+-+.+..|.+ .......+.++
T Consensus 84 g~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~-------~L~fP~G~A~Ae~l~~g~~g~~---~~~~~~l~~g~ 153 (591)
T TIGR00733 84 GYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVES-------KLPYPEGVACAEVLKAGDKARN---GTGAKPIAYGG 153 (591)
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-------CCCCCCHHHHHHHHHccccccc---hhhHHHHHHHH
Confidence 4333456677777888999999999999977664332 2333444433222222323210 11222333355
Q ss_pred HHHHHHHHHh--hhccc---cc-------ccc--cchhhhhhcccccchhhHHHHHHHHHHHHHHH----Hhc---cc--
Q 005963 565 VAALVINLLR--DVIPE---KI-------SKF--IPVPMAMAIPFFVGAYLAIDMFVGTVILFIWE----RIN---RK-- 621 (667)
Q Consensus 565 ~~g~~l~ll~--~~~p~---~~-------~~~--~P~~~~~~~~~~~p~~~~~~~~vG~~~~~~~~----r~~---~~-- 621 (667)
+++.+..++. +.+|. .+ ..+ -+++..+|.|+..+...+..+++|+++.|.+- ..+ +.
T Consensus 154 ~~s~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~SpalvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~~~~~~~~ 233 (591)
T TIGR00733 154 ILASIYAFLGSLRVWSGTLSAAKLVGRRALYFGSDLSLALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAKMGSPGDL 233 (591)
T ss_pred HHHHHHHHHHHhccCCchHHHHHhcCCcceEEEecccHHHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 5555443332 11221 01 011 34578889999999999999999999998742 111 10
Q ss_pred --------ccccccceehhhHHhhHHhHHHHHH
Q 005963 622 --------DSEDYAGAVASGLICGDGIWTMPSA 646 (667)
Q Consensus 622 --------~~~ky~y~laagL~aG~al~gvii~ 646 (667)
-|.+|---.+.|++.++++..++..
T Consensus 234 ~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~~ 266 (591)
T TIGR00733 234 SALDLAWTIWSTKVRYIGVGAIVVAALWTLLKL 266 (591)
T ss_pred cHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 1222221268899999999888753
No 8
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=86.89 E-value=18 Score=42.48 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=23.5
Q ss_pred hhhhhcccccchhhHHHHHHHHHHHHHH
Q 005963 588 PMAMAIPFFVGAYLAIDMFVGTVILFIW 615 (667)
Q Consensus 588 ~~~~~~~~~~p~~~~~~~~vG~~~~~~~ 615 (667)
++.++.|+..|......+++|.++.|++
T Consensus 217 ~~~~g~g~i~p~~~~ls~~~G~v~~w~i 244 (624)
T PF03169_consen 217 PILIGSGLIVPLWAQLSMFLGAVLAWGI 244 (624)
T ss_pred HHhcCCCeeccHHHHHHHHHHHHHHHHh
Confidence 4557888888999999999999998754
No 9
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=46.04 E-value=27 Score=23.74 Aligned_cols=18 Identities=6% Similarity=0.281 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 005963 34 GLAVSAIMGTLFCIITHR 51 (667)
Q Consensus 34 a~~lG~il~~v~a~~n~~ 51 (667)
+|++|+.+++.++.+|..
T Consensus 5 aWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAM 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998864
No 10
>PRK14749 hypothetical protein; Provisional
Probab=45.00 E-value=30 Score=23.39 Aligned_cols=18 Identities=6% Similarity=-0.081 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 005963 34 GLAVSAIMGTLFCIITHR 51 (667)
Q Consensus 34 a~~lG~il~~v~a~~n~~ 51 (667)
+|++|+.+++.++.+|..
T Consensus 5 aWiLG~~lAc~f~ilna~ 22 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLV 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999999864
No 11
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=44.24 E-value=31 Score=23.13 Aligned_cols=18 Identities=11% Similarity=0.289 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 005963 34 GLAVSAIMGTLFCIITHR 51 (667)
Q Consensus 34 a~~lG~il~~v~a~~n~~ 51 (667)
+|++|+.+++.++.+|..
T Consensus 5 aWilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998864
No 12
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=37.99 E-value=28 Score=26.79 Aligned_cols=29 Identities=14% Similarity=0.328 Sum_probs=16.6
Q ss_pred hhhhhhhhcccccCCCchHHHHHHHHHHHHHHHh
Q 005963 364 LIDQKKRENVFLKDGIPTWFAASGYVGLAAISTA 397 (667)
Q Consensus 364 ~~~d~~~~~~~~y~~vP~ww~~~~lvv~~~~~~~ 397 (667)
+.|+.++. -+.+|.||.. .+.++++++++
T Consensus 9 ~~DGI~E~----dnplP~ww~~-~f~~tivfa~~ 37 (51)
T PF14715_consen 9 EWDGIREL----DNPLPRWWLW-LFYGTIVFAVG 37 (51)
T ss_pred ccCChhhh----cCCCCHHHHH-HHHHHHHHHHH
Confidence 45554333 3689998764 44445565554
No 13
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=34.63 E-value=5e+02 Score=30.78 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=22.0
Q ss_pred hhhhhcccccchhhHHHHHHHHHHHHHH
Q 005963 588 PMAMAIPFFVGAYLAIDMFVGTVILFIW 615 (667)
Q Consensus 588 ~~~~~~~~~~p~~~~~~~~vG~~~~~~~ 615 (667)
+..++.|+..|...+..+++|+++.|++
T Consensus 231 ~~~~g~gli~p~~~~~~~~~G~vl~~~i 258 (654)
T TIGR00728 231 SAYIGSGLITPFTVGLNMLLGVILAFGI 258 (654)
T ss_pred HhhcCCCccCCHHHHHHHHHHHHHHHHH
Confidence 3455777788888888999999988764
No 14
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=30.39 E-value=66 Score=22.48 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 005963 34 GLAVSAIMGTLFCIITHR 51 (667)
Q Consensus 34 a~~lG~il~~v~a~~n~~ 51 (667)
+|++|+++++-++.+|..
T Consensus 5 aWiLG~lLAcAFgiinAl 22 (37)
T COG4890 5 AWILGLLLACAFGIINAL 22 (37)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999988865
No 15
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=27.84 E-value=79 Score=36.26 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCccchhHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcc
Q 005963 32 IRGLAVSAIMGTLFCIITHRLNLTVGIIPSLNIAAGLLGFLSVKSWTSFLSKLGFSTKPFTRQ 94 (667)
Q Consensus 32 ~Ra~~lG~il~~v~a~~n~~~~lr~g~~~~~si~~~ils~~~~~~~~~~lp~~~~npgpf~~k 94 (667)
.+|+++.++.+.+...+..--.--.....+..+.+..++|.+--.+.-...|++|+||||+.-
T Consensus 392 ~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~~f~~gp~~lG 454 (550)
T KOG1289|consen 392 LNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIFCRLFFGRDDFRPGPFNLG 454 (550)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHhheeecccccCCCCcccc
Confidence 568888877777766554332222222334555566677765544443445567899999863
Done!