Query 005963
Match_columns 667
No_of_seqs 130 out of 1106
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 12:16:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005963.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005963hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3llq_A Aquaporin Z 2; aquapori 18.2 6.8E+02 0.023 24.5 12.5 14 492-505 157-170 (256)
2 1n0w_B Breast cancer type 2 su 10.4 62 0.0021 21.6 0.2 17 2-18 13-29 (35)
3 3mk7_C Cytochrome C oxidase, C 8.7 3.5E+02 0.012 27.1 5.2 20 376-396 51-70 (311)
4 3h3g_B Parathyroid hormone-rel 8.0 3E+02 0.01 16.9 2.5 18 478-504 3-20 (24)
5 2k1a_A Integrin alpha-IIB; sin 7.5 3.8E+02 0.013 18.8 3.3 14 376-389 5-18 (42)
6 2jwa_A Receptor tyrosine-prote 7.4 3.6E+02 0.012 19.1 3.1 19 603-621 23-41 (44)
7 2knc_A Integrin alpha-IIB; tra 6.4 4.4E+02 0.015 19.5 3.3 11 377-387 8-18 (54)
8 2l2t_A Receptor tyrosine-prote 6.3 3.5E+02 0.012 19.2 2.6 15 607-621 26-40 (44)
9 3mp7_B Preprotein translocase 5.6 4.4E+02 0.015 20.0 3.0 41 1-41 1-43 (61)
10 2ks1_B Epidermal growth factor 5.5 4.1E+02 0.014 18.8 2.6 15 607-621 27-41 (44)
No 1
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=18.16 E-value=6.8e+02 Score=24.46 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHHHH
Q 005963 492 AKSMFVSQLLGTAM 505 (667)
Q Consensus 492 Pr~~f~~Ql~G~iv 505 (667)
+...|..|+++|.+
T Consensus 157 ~~~~f~~E~i~Tf~ 170 (256)
T 3llq_A 157 LVSALLIEIILTAF 170 (256)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455666665554
No 2
>1n0w_B Breast cancer type 2 susceptibility protein; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: j.97.1.1
Probab=10.41 E-value=62 Score=21.64 Aligned_cols=17 Identities=18% Similarity=0.474 Sum_probs=15.0
Q ss_pred CccccccCcccchhhhh
Q 005963 2 GTEVEVSEPLIEKITAE 18 (667)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (667)
|.+|+.++|-+|+|.-+
T Consensus 13 GKkv~IakesL~Kvk~l 29 (35)
T 1n0w_B 13 GKKVKIAKESLDKVKNL 29 (35)
T ss_dssp SCBCCCCHHHHHHTTTT
T ss_pred CcEEEehHHHHHHHHHH
Confidence 78999999999998754
No 3
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=8.70 E-value=3.5e+02 Score=27.07 Aligned_cols=20 Identities=15% Similarity=0.612 Sum_probs=11.9
Q ss_pred cCCCchHHHHHHHHHHHHHHH
Q 005963 376 KDGIPTWFAASGYVGLAAIST 396 (667)
Q Consensus 376 y~~vP~ww~~~~lvv~~~~~~ 396 (667)
.+.+|.||... +++++++++
T Consensus 51 ~nplp~ww~~~-f~~~iv~~~ 70 (311)
T 3mk7_C 51 DNPLPRWWFLL-FIGTLVFGI 70 (311)
T ss_dssp CCCCCHHHHHH-HHHHHHHHH
T ss_pred cCCCChHHHHH-HHHHHHHHH
Confidence 36789988654 444444444
No 4
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=8.03 E-value=3e+02 Score=16.91 Aligned_cols=18 Identities=22% Similarity=0.608 Sum_probs=13.2
Q ss_pred hhhhhhhhhhcCCChHHHHHHHHHHHH
Q 005963 478 LMQDFKTGYLTLSSAKSMFVSQLLGTA 504 (667)
Q Consensus 478 ~~~DlK~G~y~~~pPr~~f~~Ql~G~i 504 (667)
-+||+| |.+|.-++++.+
T Consensus 3 s~Q~~r---------Rr~wL~~ll~~v 20 (24)
T 3h3g_B 3 SIQDLR---------RRFFLHHLIAEI 20 (26)
T ss_dssp CHHHHH---------HHHHHHHHHHHH
T ss_pred cHHHHH---------HHHHHHHHHHHh
Confidence 368888 888887777643
No 5
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=7.51 E-value=3.8e+02 Score=18.76 Aligned_cols=14 Identities=29% Similarity=0.843 Sum_probs=8.3
Q ss_pred cCCCchHHHHHHHH
Q 005963 376 KDGIPTWFAASGYV 389 (667)
Q Consensus 376 y~~vP~ww~~~~lv 389 (667)
+.++|.|.++.+.+
T Consensus 5 ~~~vp~wiIi~s~l 18 (42)
T 2k1a_A 5 ERAIPIWWVLVGVL 18 (42)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred cCCcchHHHHHHHH
Confidence 34688776655433
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=7.43 E-value=3.6e+02 Score=19.14 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 005963 603 IDMFVGTVILFIWERINRK 621 (667)
Q Consensus 603 ~~~~vG~~~~~~~~r~~~~ 621 (667)
..+.++..+..|+|||+.+
T Consensus 23 l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhheehhhhh
Confidence 3455666667778877654
No 7
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=6.38 E-value=4.4e+02 Score=19.52 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=5.8
Q ss_pred CCCchHHHHHH
Q 005963 377 DGIPTWFAASG 387 (667)
Q Consensus 377 ~~vP~ww~~~~ 387 (667)
.++|.|.++.+
T Consensus 8 ~~vp~wiIi~s 18 (54)
T 2knc_A 8 RAIPIWWVLVG 18 (54)
T ss_dssp TTCCHHHHHHH
T ss_pred CCcchHHHHHH
Confidence 35676654433
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=6.25 E-value=3.5e+02 Score=19.19 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhccc
Q 005963 607 VGTVILFIWERINRK 621 (667)
Q Consensus 607 vG~~~~~~~~r~~~~ 621 (667)
+++.+.+|+|||+.+
T Consensus 26 i~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 26 VGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHTTCSS
T ss_pred HHHHHHHHhhhhhhh
Confidence 334445666666544
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=5.61 E-value=4.4e+02 Score=19.95 Aligned_cols=41 Identities=7% Similarity=-0.150 Sum_probs=21.6
Q ss_pred CCccccccCcccchhhhhcccCCCCCCCc--chHHHHHHHHHH
Q 005963 1 MGTEVEVSEPLIEKITAEEDQLIPEWKDQ--ITIRGLAVSAIM 41 (667)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--lT~Ra~~lG~il 41 (667)
|..-+|...+.++|.+.+-..-.-|+..| .+.|+..+|+++
T Consensus 1 m~~~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i 43 (61)
T 3mp7_B 1 MAELQERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIIL 43 (61)
T ss_dssp -------CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 44456777788888888877644444444 455555555544
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=5.51 E-value=4.1e+02 Score=18.82 Aligned_cols=15 Identities=20% Similarity=0.018 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhccc
Q 005963 607 VGTVILFIWERINRK 621 (667)
Q Consensus 607 vG~~~~~~~~r~~~~ 621 (667)
+++.+.+|+|||+.+
T Consensus 27 i~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 27 VALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhhhhHhh
Confidence 334455666666543
Done!