Query 005963
Match_columns 667
No_of_seqs 130 out of 1106
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 12:16:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005963.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005963hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q90m_ f.23.25.1 (M:) PetM su 7.1 1.6E+02 0.012 17.6 2.5 16 632-647 2-17 (34)
2 d2e74d2 f.23.12.1 (D:12-45) IS 4.4 2.3E+02 0.017 16.9 2.1 16 563-578 18-33 (34)
3 d1zava1 d.58.62.1 (A:1-177) Ri 4.0 3.3E+02 0.024 22.6 3.9 30 483-512 127-156 (177)
4 d1d5ta2 d.16.1.6 (A:292-388) G 3.8 1.1E+02 0.0077 23.7 0.2 20 2-21 63-82 (97)
5 d1ijwc_ a.4.1.2 (C:) HIN recom 3.5 1.2E+02 0.0087 20.1 0.2 21 2-22 1-21 (47)
6 d2bcgg3 d.16.1.6 (G:302-399) G 3.5 1.3E+02 0.0098 23.1 0.5 21 2-22 64-84 (98)
7 d1h1oa1 a.3.1.4 (A:12-93) Cyto 3.3 1.2E+02 0.0084 21.8 -0.0 20 6-25 59-78 (82)
8 d1gvda_ a.4.1.3 (A:) c-Myb, DN 2.3 2.9E+02 0.021 18.1 1.1 15 87-101 2-16 (52)
9 d1v54l_ f.23.6.1 (L:) Mitochon 2.1 6.9E+02 0.05 16.0 2.7 14 155-168 23-36 (46)
10 d1ygya3 d.58.18.1 (A:452-529) 2.0 1.8E+02 0.013 20.9 -0.4 18 3-20 51-68 (78)
No 1
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.10 E-value=1.6e+02 Score=17.57 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=11.6
Q ss_pred hhHHhhHHhHHHHHHH
Q 005963 632 SGLICGDGIWTMPSAV 647 (667)
Q Consensus 632 agL~aG~al~gvii~~ 647 (667)
++++||.++.-+-+.+
T Consensus 2 a~fiagta~tmig~tl 17 (34)
T d1q90m_ 2 AEFIAGTALTMVGMTL 17 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CceecchhHHHHHHHH
Confidence 6789999887665543
No 2
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.39 E-value=2.3e+02 Score=16.93 Aligned_cols=16 Identities=19% Similarity=0.225 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhhhcc
Q 005963 563 FFVAALVINLLRDVIP 578 (667)
Q Consensus 563 ~~~~g~~l~ll~~~~p 578 (667)
|..+|++-|+++|+.|
T Consensus 18 g~alg~lypvvkyfip 33 (34)
T d2e74d2 18 GVALGALYPLVKYFIP 33 (34)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHhhhhhHHhhcCC
Confidence 5677888888888765
No 3
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=4.00 E-value=3.3e+02 Score=22.64 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=23.9
Q ss_pred hhhhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 005963 483 KTGYLTLSSAKSMFVSQLLGTAMGCVFAPL 512 (667)
Q Consensus 483 K~G~y~~~pPr~~f~~Ql~G~ivg~~v~~~ 512 (667)
++-.+.+.|.|...++|++|.+-+..-...
T Consensus 127 ~i~~la~LPs~eel~a~l~~~L~ap~~~l~ 156 (177)
T d1zava1 127 EVENIAKLPSKEELYAMLVGRVKAPITGLV 156 (177)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhHHHHHH
Confidence 344678999999999999999887665543
No 4
>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.84 E-value=1.1e+02 Score=23.73 Aligned_cols=20 Identities=30% Similarity=0.155 Sum_probs=16.3
Q ss_pred CccccccCcccchhhhhccc
Q 005963 2 GTEVEVSEPLIEKITAEEDQ 21 (667)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~ 21 (667)
.|.|||++|..|=-++++-.
T Consensus 63 ST~vET~nPe~El~pgl~lL 82 (97)
T d1d5ta2 63 STTVETTDPEKEVEPALGLL 82 (97)
T ss_dssp EEECCSSCHHHHTHHHHTTT
T ss_pred EEEEecCCcHHHHHHHHHhh
Confidence 47899999998877777765
No 5
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=3.53 E-value=1.2e+02 Score=20.06 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=15.4
Q ss_pred CccccccCcccchhhhhcccC
Q 005963 2 GTEVEVSEPLIEKITAEEDQL 22 (667)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (667)
||.=-.+|||++|++...++.
T Consensus 1 GR~~~lt~~q~~~a~~l~~~G 21 (47)
T d1ijwc_ 1 GRPRAINKHEQEQISRLLEKG 21 (47)
T ss_dssp CCCCSSCHHHHHHHHHHHHTT
T ss_pred CCCCcCCHHHHHHHHHHHHCC
Confidence 555567888888888777664
No 6
>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.46 E-value=1.3e+02 Score=23.12 Aligned_cols=21 Identities=29% Similarity=0.112 Sum_probs=16.5
Q ss_pred CccccccCcccchhhhhcccC
Q 005963 2 GTEVEVSEPLIEKITAEEDQL 22 (667)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (667)
.|.|||++|..|=-++++-..
T Consensus 64 ST~vET~nPe~El~pgl~lLG 84 (98)
T d2bcgg3 64 STIIETDKPHIELEPAFKLLG 84 (98)
T ss_dssp EEECCSSCHHHHTHHHHGGGC
T ss_pred EEEeecCCcHHHHHHHHHhhc
Confidence 478999999888777777653
No 7
>d1h1oa1 a.3.1.4 (A:12-93) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}
Probab=3.33 E-value=1.2e+02 Score=21.77 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=14.4
Q ss_pred cccCcccchhhhhcccCCCC
Q 005963 6 EVSEPLIEKITAEEDQLIPE 25 (667)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~ 25 (667)
..|||+|++|.++-....+|
T Consensus 59 ~LSd~eI~~la~Yi~sl~pP 78 (82)
T d1h1oa1 59 ALDSAKITALADYFNAQKPP 78 (82)
T ss_dssp TCCHHHHHHHHHHHHHCSSC
T ss_pred hCCHHHHHHHHHHHHhCCCC
Confidence 47889999888876654444
No 8
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.26 E-value=2.9e+02 Score=18.09 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=9.8
Q ss_pred CCCCCCcchhhhhhh
Q 005963 87 STKPFTRQENTVIQT 101 (667)
Q Consensus 87 npgpf~~kE~~liq~ 101 (667)
+.||||..|-..+.-
T Consensus 2 ~rg~WT~eED~~L~~ 16 (52)
T d1gvda_ 2 IKGPWTKEEDQRLIK 16 (52)
T ss_dssp CCCSCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 457788877666543
No 9
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.09 E-value=6.9e+02 Score=16.04 Aligned_cols=14 Identities=14% Similarity=0.142 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHh
Q 005963 155 FVVSFVGLFSLVAL 168 (667)
Q Consensus 155 l~~~llG~~~Ag~l 168 (667)
.-+.++|.+||.|+
T Consensus 23 ~m~~~fGsgfa~PF 36 (46)
T d1v54l_ 23 MMTLFFGSGFAAPF 36 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchH
Confidence 33567899998873
No 10
>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.03 E-value=1.8e+02 Score=20.94 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=0.0
Q ss_pred ccccccCcccchhhhhcc
Q 005963 3 TEVEVSEPLIEKITAEED 20 (667)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (667)
.|-+++|+.+||++..++
T Consensus 51 vD~~~~~~vl~~I~~~~~ 68 (78)
T d1ygya3 51 LDQDVPDDVRTAIAAAVD 68 (78)
T ss_dssp ESSCCCHHHHHHHHHHHT
T ss_pred cCCCccHHHHHHHHcCCC
Done!