Query 005964
Match_columns 667
No_of_seqs 335 out of 3387
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 16:22:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 2E-100 5E-105 851.2 48.7 507 61-630 63-574 (727)
2 PLN03192 Voltage-dependent pot 100.0 5.1E-67 1.1E-71 618.4 50.1 454 59-602 45-499 (823)
3 KOG0501 K+-channel KCNQ [Inorg 100.0 2E-67 4.2E-72 548.8 25.8 477 49-599 189-668 (971)
4 KOG0500 Cyclic nucleotide-gate 100.0 2.9E-64 6.2E-69 521.9 38.0 421 83-590 4-425 (536)
5 KOG0499 Cyclic nucleotide-gate 100.0 2.1E-56 4.5E-61 468.4 32.5 435 64-602 216-653 (815)
6 PRK09392 ftrB transcriptional 99.5 1.4E-13 2.9E-18 139.8 16.5 131 467-607 7-137 (236)
7 PRK11753 DNA-binding transcrip 99.5 2.7E-12 5.8E-17 127.8 18.7 116 476-600 6-122 (211)
8 KOG3713 Voltage-gated K+ chann 99.4 1.1E-12 2.3E-17 139.4 14.6 187 123-396 241-430 (477)
9 cd00038 CAP_ED effector domain 99.4 1.9E-12 4.2E-17 114.2 12.5 110 474-593 1-111 (115)
10 PRK11161 fumarate/nitrate redu 99.4 6.3E-12 1.4E-16 127.5 14.6 121 469-600 15-137 (235)
11 PF00520 Ion_trans: Ion transp 99.4 3.2E-12 6.9E-17 125.0 11.4 194 126-392 1-200 (200)
12 PRK10402 DNA-binding transcrip 99.4 7.5E-12 1.6E-16 126.2 14.1 113 479-601 20-133 (226)
13 smart00100 cNMP Cyclic nucleot 99.3 2.6E-11 5.6E-16 107.5 14.7 109 474-589 1-110 (120)
14 PF00027 cNMP_binding: Cyclic 99.3 7.2E-12 1.6E-16 106.5 9.6 88 493-589 2-90 (91)
15 COG0664 Crp cAMP-binding prote 99.3 6.4E-11 1.4E-15 117.3 16.6 125 470-604 3-128 (214)
16 KOG0614 cGMP-dependent protein 99.2 1.1E-11 2.3E-16 131.3 7.4 128 463-600 268-398 (732)
17 PRK09391 fixK transcriptional 99.2 1E-10 2.2E-15 118.3 13.3 106 484-602 32-138 (230)
18 COG2905 Predicted signal-trans 99.2 3.9E-10 8.6E-15 121.4 17.3 119 466-597 6-124 (610)
19 PLN02868 acyl-CoA thioesterase 99.2 1.2E-10 2.6E-15 127.9 13.2 113 466-589 7-119 (413)
20 KOG0614 cGMP-dependent protein 99.2 2.2E-11 4.8E-16 129.0 6.5 116 461-589 148-263 (732)
21 TIGR03697 NtcA_cyano global ni 99.2 4.4E-10 9.5E-15 110.2 14.5 96 498-602 1-98 (193)
22 KOG1113 cAMP-dependent protein 99.2 5.9E-11 1.3E-15 121.0 7.5 111 466-589 121-231 (368)
23 PRK13918 CRP/FNR family transc 99.1 1E-09 2.2E-14 108.4 14.1 83 489-581 5-90 (202)
24 KOG1545 Voltage-gated shaker-l 99.0 1.1E-10 2.4E-15 118.3 2.1 47 346-392 396-442 (507)
25 KOG1113 cAMP-dependent protein 98.8 3.2E-09 6.9E-14 108.5 6.1 118 460-589 233-350 (368)
26 PF07885 Ion_trans_2: Ion chan 98.8 2.9E-08 6.2E-13 82.7 10.2 55 343-397 24-78 (79)
27 KOG1419 Voltage-gated K+ chann 98.8 8.3E-08 1.8E-12 102.9 15.0 88 341-435 267-354 (654)
28 KOG4390 Voltage-gated A-type K 98.4 2.2E-08 4.7E-13 102.6 -3.5 183 122-398 227-415 (632)
29 KOG1420 Ca2+-activated K+ chan 98.1 4.3E-06 9.2E-11 89.8 7.1 60 342-401 287-346 (1103)
30 KOG2968 Predicted esterase of 98.0 1.1E-05 2.3E-10 91.3 7.0 135 460-604 470-613 (1158)
31 PRK10537 voltage-gated potassi 97.9 0.00014 3E-09 79.0 14.0 54 343-396 168-221 (393)
32 PF08412 Ion_trans_N: Ion tran 97.7 2.7E-05 5.7E-10 63.6 2.7 35 62-96 33-67 (77)
33 KOG3684 Ca2+-activated K+ chan 97.5 0.0061 1.3E-07 65.2 18.3 90 341-438 285-374 (489)
34 PF01007 IRK: Inward rectifier 97.5 0.00097 2.1E-08 70.7 11.6 54 343-396 84-139 (336)
35 KOG1418 Tandem pore domain K+ 96.7 0.0034 7.3E-08 69.0 7.5 56 344-399 116-171 (433)
36 PF04831 Popeye: Popeye protei 96.7 0.093 2E-06 48.4 15.1 104 477-589 14-120 (153)
37 KOG2968 Predicted esterase of 96.6 0.016 3.4E-07 66.6 11.9 102 485-590 110-214 (1158)
38 PRK11832 putative DNA-binding 96.6 0.049 1.1E-06 53.4 13.7 95 483-589 15-110 (207)
39 KOG2302 T-type voltage-gated C 96.3 0.18 3.9E-06 58.5 17.5 89 65-185 1104-1202(1956)
40 PLN03223 Polycystin cation cha 95.9 0.2 4.2E-06 60.6 16.2 32 369-400 1395-1426(1634)
41 KOG3827 Inward rectifier K+ ch 95.9 0.028 6E-07 59.1 8.2 53 344-396 113-167 (400)
42 KOG4404 Tandem pore domain K+ 95.8 0.086 1.9E-06 54.3 10.9 57 343-399 186-250 (350)
43 KOG3542 cAMP-regulated guanine 95.4 0.033 7.1E-07 61.8 6.9 113 465-589 279-392 (1283)
44 KOG4404 Tandem pore domain K+ 93.4 0.016 3.5E-07 59.4 -1.0 50 343-392 80-129 (350)
45 KOG3193 K+ channel subunit [In 91.6 0.31 6.6E-06 53.2 5.6 33 345-377 219-251 (1087)
46 KOG3542 cAMP-regulated guanine 89.2 0.52 1.1E-05 52.8 5.0 90 467-577 37-126 (1283)
47 KOG1418 Tandem pore domain K+ 89.2 0.083 1.8E-06 57.9 -1.1 48 342-389 241-296 (433)
48 COG4709 Predicted membrane pro 83.9 4.9 0.00011 38.5 7.8 70 409-480 6-80 (195)
49 KOG3676 Ca2+-permeable cation 82.8 1.1E+02 0.0023 36.1 19.2 81 349-430 592-681 (782)
50 PF08006 DUF1700: Protein of u 76.3 13 0.00028 35.9 8.3 54 409-464 6-64 (181)
51 TIGR00870 trp transient-recept 68.2 2.6E+02 0.0057 33.3 19.1 34 368-401 587-620 (743)
52 PF07883 Cupin_2: Cupin domain 68.2 19 0.00041 28.2 6.2 45 493-542 3-48 (71)
53 KOG2301 Voltage-gated Ca2+ cha 66.7 60 0.0013 41.8 12.9 43 123-186 873-915 (1592)
54 PRK13290 ectC L-ectoine syntha 46.4 1.2E+02 0.0026 27.3 8.2 51 491-544 38-88 (125)
55 TIGR03037 anthran_nbaC 3-hydro 44.9 84 0.0018 29.7 7.1 63 502-580 43-105 (159)
56 PF05899 Cupin_3: Protein of u 44.5 47 0.001 26.9 4.8 42 496-543 15-56 (74)
57 PF13314 DUF4083: Domain of un 43.2 96 0.0021 23.9 5.7 46 370-418 5-56 (58)
58 KOG3614 Ca2+/Mg2+-permeable ca 42.9 8.1E+02 0.018 31.1 17.3 53 373-425 1019-1073(1381)
59 PLN03192 Voltage-dependent pot 42.4 7E+02 0.015 30.2 19.1 41 420-464 357-397 (823)
60 PF00060 Lig_chan: Ligand-gate 41.4 31 0.00068 31.4 3.8 75 340-420 41-115 (148)
61 PF08016 PKD_channel: Polycyst 40.8 1.1E+02 0.0023 33.8 8.5 23 163-186 231-253 (425)
62 KOG2301 Voltage-gated Ca2+ cha 40.4 2.6E+02 0.0057 36.3 12.4 48 121-190 472-519 (1592)
63 PF14377 DUF4414: Domain of un 39.7 54 0.0012 28.7 4.8 42 421-462 52-104 (108)
64 smart00835 Cupin_1 Cupin. This 37.9 1.1E+02 0.0023 28.3 6.7 54 490-543 32-87 (146)
65 COG0662 {ManC} Mannose-6-phosp 36.6 1.2E+02 0.0025 27.4 6.6 49 488-541 36-85 (127)
66 PRK13264 3-hydroxyanthranilate 36.2 80 0.0017 30.4 5.5 61 506-581 52-112 (177)
67 COG3718 IolB Uncharacterized e 36.1 1.3E+02 0.0027 30.2 6.9 75 489-580 30-112 (270)
68 PF02037 SAP: SAP domain; Int 34.7 84 0.0018 21.4 4.0 26 409-434 5-35 (35)
69 TIGR03404 bicupin_oxalic bicup 34.0 1.2E+02 0.0025 33.0 7.1 52 492-543 71-122 (367)
70 PF07697 7TMR-HDED: 7TM-HD ext 33.6 2.2E+02 0.0048 27.8 8.8 32 478-509 174-207 (222)
71 KOG0498 K+-channel ERG and rel 33.6 2E+02 0.0043 34.1 9.3 42 450-491 371-417 (727)
72 PF10011 DUF2254: Predicted me 33.1 2.2E+02 0.0047 30.9 9.1 61 340-402 97-159 (371)
73 PRK04190 glucose-6-phosphate i 33.1 2E+02 0.0044 28.0 8.0 52 491-542 71-131 (191)
74 KOG2378 cAMP-regulated guanine 32.8 43 0.00093 36.6 3.4 44 537-589 1-45 (573)
75 KOG0500 Cyclic nucleotide-gate 29.3 8.6E+02 0.019 27.4 13.3 125 368-520 181-348 (536)
76 PF12973 Cupin_7: ChrR Cupin-l 28.9 1.3E+02 0.0029 25.1 5.3 64 489-575 25-88 (91)
77 KOG3300 NADH:ubiquinone oxidor 27.2 1.5E+02 0.0033 26.8 5.3 45 410-454 62-106 (146)
78 TIGR03404 bicupin_oxalic bicup 27.1 1.8E+02 0.0039 31.5 7.2 53 490-542 247-300 (367)
79 COG1917 Uncharacterized conser 25.7 1.7E+02 0.0037 26.2 5.8 50 490-544 45-95 (131)
80 PF00612 IQ: IQ calmodulin-bin 25.6 95 0.0021 18.3 2.7 17 612-628 3-19 (21)
81 PF11151 DUF2929: Protein of u 25.4 50 0.0011 25.4 1.8 18 343-360 2-19 (57)
82 smart00814 Alpha_TIF Alpha tra 25.4 6.8E+02 0.015 26.7 10.5 113 395-508 130-260 (356)
83 PF13623 SurA_N_2: SurA N-term 24.5 2.3E+02 0.0051 26.3 6.5 45 375-419 10-67 (145)
84 PF00520 Ion_trans: Ion transp 23.9 5.8E+02 0.013 23.6 10.2 23 250-272 100-122 (200)
85 PF01484 Col_cuticle_N: Nemato 22.9 3.1E+02 0.0067 20.1 7.1 42 372-413 8-49 (53)
86 KOG1054 Glutamate-gated AMPA-t 22.4 1.1E+02 0.0024 34.7 4.4 71 346-422 598-668 (897)
87 PHA03029 hypothetical protein; 22.3 4.3E+02 0.0093 21.4 6.8 40 368-407 3-42 (92)
88 PF00190 Cupin_1: Cupin; Inte 22.2 2.4E+02 0.0051 25.8 6.1 55 489-543 35-96 (144)
89 PRK06771 hypothetical protein; 22.2 4.8E+02 0.01 22.3 7.1 34 385-418 14-47 (93)
90 PRK11171 hypothetical protein; 21.6 3E+02 0.0066 28.3 7.3 72 490-578 63-136 (266)
91 PF14841 FliG_M: FliG middle d 20.6 1.2E+02 0.0026 24.9 3.3 39 446-492 30-68 (79)
92 KOG2302 T-type voltage-gated C 20.6 1.1E+03 0.024 29.1 11.9 10 283-292 1599-1608(1956)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-100 Score=851.15 Aligned_cols=507 Identities=41% Similarity=0.726 Sum_probs=459.6
Q ss_pred CCCCCceeCCCChhHHhHHHHHHHHHHHHHhhhhhhhhhhheecCCCCCCCcceecCcchhHHHHHHHHHHHHHHHHHHH
Q 005964 61 YQTRTRILDPRCDFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWHLW 140 (667)
Q Consensus 61 ~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~if~~Di~ 140 (667)
.+...+|++|+|+|+..||.+++++++|+++++|++||++.. ++ +..| .|+.+...+++++.++|++|++||+
T Consensus 63 ~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~----~~-~~~~--~d~~~~~~l~v~d~ivD~fflvdIv 135 (727)
T KOG0498|consen 63 DKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLI----DD-ERKC--IDGKLAAPLTVLDTIVDIFFLVDIV 135 (727)
T ss_pred ccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEec----cc-cccc--ccccccCceeeHHHHHHHHHHHHHH
Confidence 344566999999999999999999999999999998888765 44 3667 7888889999999999999999999
Q ss_pred HHhceeEEcCCcccccCCeEeecHHHHHHhhhcCCcchHHHHHhhcchhhhhhhhccccccchhhHHHHHHHHHHHHHHh
Q 005964 141 LQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIKEDRMKLIMTILILVILFQ 220 (667)
Q Consensus 141 l~f~t~y~~~~s~~~~~g~~V~d~~~Ia~~Ylks~~~F~~Dlls~lP~~~i~~~~~~~~~~~~~~~~~~~~~l~l~~l~~ 220 (667)
+||||||++++| -++|.||++||+||+|+ ||++|++|++|+++++.|.++ +........+.+..+.+++
T Consensus 136 L~Frtayv~~~s-----~elV~dpk~IA~rYl~t--wFiiDlis~lP~~~i~~~~~~----~~~~~~~~~~~l~~il~~~ 204 (727)
T KOG0498|consen 136 LNFRTAYVDPSS-----YELVDDPKKIAKRYLKT--WFLIDLISTLPFDQIVVLVVI----GSTSLALESTILVGILLLQ 204 (727)
T ss_pred HhheEEEECCCC-----ceeeeCHHHHHHHHHhh--hHHHHHHHhcChhhheeeeee----cccchhhhHHHHHHHHHHH
Confidence 999999999986 47999999999999999 999999999999999988765 1111222233455556778
Q ss_pred hhHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHhhhccCCCCCCccccccCC
Q 005964 221 FLPKVYHSLCLMRRMRKVTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSCSKVY 300 (667)
Q Consensus 221 ~Llkl~r~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ll~~H~~aC~wy~i~~~~~~~c~~~~c~~~~~c~~~l~~~~~~ 300 (667)
||+|++|+++++.++++..++..+++|++++++|+++++++||+||+||++|.++..+||.++
T Consensus 205 rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~----------------- 267 (727)
T KOG0498|consen 205 RLPRLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA----------------- 267 (727)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc-----------------
Confidence 999999999999999999999999999998899999999999999999999999887777643
Q ss_pred CCCCCccccccccc----cCCCCCCCccccccccccccccCCchhhHHHHHHHHHHHHhhccCccccCCCchhhHHHHHH
Q 005964 301 HKSEFPLALMVGKS----SCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSIC 376 (667)
Q Consensus 301 ~~~~w~~~sw~~~~----~c~~~~~~~~~g~y~~~~~~~~~~s~~~~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~ 376 (667)
+|+... .|. ++.|+||+|. ++.+|++|+||+++||||+|||+++++|..|++|+|+
T Consensus 268 --------tw~~~l~~~~~~~--~~~~~fg~~s----------~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~ 327 (727)
T KOG0498|consen 268 --------TWLGSLGRLLSCY--NLSFTFGIYS----------LALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIF 327 (727)
T ss_pred --------ccccccccccccC--cccccccchh----------HHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHH
Confidence 233211 122 1225677764 4569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc-CCCHHHHHhhCChh
Q 005964 377 IVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATM-GEDELDWIEDLPQG 455 (667)
Q Consensus 377 i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~~rV~~y~~~~~~~~-~~de~~il~~Lp~~ 455 (667)
+|++|+++||++||||++++|+++++.++|+.+++++++||++++||+.||+||++|++|+|..+ |+||++++++||++
T Consensus 328 ~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~ 407 (727)
T KOG0498|consen 328 IMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKD 407 (727)
T ss_pred HHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEc
Q 005964 456 LRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVL 535 (667)
Q Consensus 456 Lr~~i~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l 535 (667)
||++|++|+|.++++++|+|+++|++++++|+.++++..|+|||+|++|||+.++||||.+|.+++...+.+|..+...+
T Consensus 408 LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L 487 (727)
T KOG0498|consen 408 LRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAIL 487 (727)
T ss_pred HHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999988765666678999
Q ss_pred CCCCeEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 005964 536 GPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYYSSNWRTWAAVN 615 (667)
Q Consensus 536 ~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r~ys~~~~~~~~~~ 615 (667)
++||+|||..++||++ .| ++.||+|+|.|+++.|+++||.+++++|| .++.+++++++++|+++|++|++++
T Consensus 488 ~~Gd~~GeEl~~~~~~------~p-~t~TVralt~~el~~L~~~dL~~V~~~f~-~~~~~~l~~~~r~~s~~~r~~aa~~ 559 (727)
T KOG0498|consen 488 GPGDFFGEELLTWCLD------LP-QTRTVRALTYCELFRLSADDLKEVLQQFR-RLGSKFLQHTFRYYSHLWRTWAACF 559 (727)
T ss_pred cCCCccchHHHHHHhc------CC-CCceeehhhhhhHHhccHHHHHHHHHHhH-HHHHHHHHhHHHHhhhhhhhhhhhh
Confidence 9999999888888863 56 58999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 005964 616 IQFAWRRYRIRIRGG 630 (667)
Q Consensus 616 ~q~~~~~~~~r~~~~ 630 (667)
+|.+|+++.+|+...
T Consensus 560 iq~a~r~~~~~~~~~ 574 (727)
T KOG0498|consen 560 IQAAWRRHIKRKGEE 574 (727)
T ss_pred HHHHHHHHHHhhccc
Confidence 999999999999777
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=5.1e-67 Score=618.44 Aligned_cols=454 Identities=20% Similarity=0.261 Sum_probs=380.5
Q ss_pred CCCCCCCceeCCCChhHHhHHHHHHHHHHHHHhhhhhhhhhhheecCCCCCCCcceecCcchhHHHHHHHHHHHHHHHHH
Q 005964 59 PDYQTRTRILDPRCDFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWH 138 (667)
Q Consensus 59 ~~~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~if~~D 138 (667)
+..+.++++|+|.|+++++||.+++++++|+++++|+.+ +|. +.. . ...+.+++.++|++|++|
T Consensus 45 ~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~---~F~---~~~--~--------~~~~~~~d~i~~~~F~iD 108 (823)
T PLN03192 45 NHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEV---AFL---NAS--P--------KRGLEIADNVVDLFFAVD 108 (823)
T ss_pred CccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHH---Hee---CCC--C--------CCCeeeHHHHHHHHHHHH
Confidence 444567899999999999999999999999999999853 331 110 0 013567899999999999
Q ss_pred HHHHhceeEEcCCcccccCCeEeecHHHHHHhhhcCCcchHHHHHhhcchhhhhhhhccccccchhhHHHHHHHHHHHHH
Q 005964 139 LWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIKEDRMKLIMTILILVIL 218 (667)
Q Consensus 139 i~l~f~t~y~~~~s~~~~~g~~V~d~~~Ia~~Ylks~~~F~~Dlls~lP~~~i~~~~~~~~~~~~~~~~~~~~~l~l~~l 218 (667)
|+++|+|||+++.+ |.+|.|+++|++||+|+ ||++|++|++|++++....... ........+++++
T Consensus 109 i~l~f~~ay~d~~~-----~~lV~d~~~I~~~Yl~~--~f~~Dlis~lP~~~i~~~~~~~-----~~~~~~~~~l~ll-- 174 (823)
T PLN03192 109 IVLTFFVAYIDPRT-----QLLVRDRKKIAVRYLST--WFLMDVASTIPFQALAYLITGT-----VKLNLSYSLLGLL-- 174 (823)
T ss_pred HHhheeEEEEeCCC-----cEEEeCHHHHHHHHHHH--hHHHHHHHHhHHHHHHHHhcCC-----ccchHHHHHHHHH--
Confidence 99999999999864 89999999999999999 9999999999999865432211 0111122333333
Q ss_pred HhhhHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHhhhccCCCCCCcccccc
Q 005964 219 FQFLPKVYHSLCLMRRMRKVTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSCSK 298 (667)
Q Consensus 219 ~~~Llkl~r~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ll~~H~~aC~wy~i~~~~~~~c~~~~c~~~~~c~~~l~~~~ 298 (667)
|++|+.|+.+++.++++...+ ...+.++++++++.++++||+||+||+++...
T Consensus 175 --rl~Rl~ri~~~~~~le~~~~~--~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~----------------------- 227 (823)
T PLN03192 175 --RFWRLRRVKQLFTRLEKDIRF--SYFWIRCARLLSVTLFLVHCAGCLYYLIADRY----------------------- 227 (823)
T ss_pred --HHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------------------
Confidence 455666666666666665443 22355677888888889999999999998421
Q ss_pred CCCCCCCccccccccccCCCCCCCccccccccccccccCCchhhHHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHH
Q 005964 299 VYHKSEFPLALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIV 378 (667)
Q Consensus 299 ~~~~~~w~~~sw~~~~~c~~~~~~~~~g~y~~~~~~~~~~s~~~~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~ 378 (667)
.. .+.+|+... .++..+.+++.+|++|+||+++|||||||||++|.|..|++|++++|
T Consensus 228 --~~---~~~~Wi~~~-----------------~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~m 285 (823)
T PLN03192 228 --PH---QGKTWIGAV-----------------IPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYM 285 (823)
T ss_pred --CC---CCCchHHHh-----------------hhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHH
Confidence 00 134676420 12235678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHH
Q 005964 379 LCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATMGEDELDWIEDLPQGLRR 458 (667)
Q Consensus 379 i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~~rV~~y~~~~~~~~~~de~~il~~Lp~~Lr~ 458 (667)
++|+++|||+||+|++++.+.+.+..+|+++++.+++||+++++|++||+||++|+++.|+..+.+++++++.||++||.
T Consensus 286 l~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~Lp~~Lr~ 365 (823)
T PLN03192 286 LFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAESLNQQQLIDQLPKSICK 365 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccHHHHHHHcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987788899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeE-EEEEcCC
Q 005964 459 DIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKL-ATSVLGP 537 (667)
Q Consensus 459 ~i~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~-~i~~l~~ 537 (667)
+|..+++.+.++++|+|++++++++.+++..++++.|.|||.|+.+||.++.+|||.+|.|++... .+|++ ++..+.+
T Consensus 366 ~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~-~~~~e~~l~~l~~ 444 (823)
T PLN03192 366 SICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDS-EGEKERVVGTLGC 444 (823)
T ss_pred HHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEe-cCCcceeeEEccC
Confidence 999999999999999999999999999999999999999999999999999999999999999763 34444 4889999
Q ss_pred CCeEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHH
Q 005964 538 GGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITR 602 (667)
Q Consensus 538 G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r 602 (667)
|++|||.++ +.+.| ++++++|.+.|+++.|++++|.++++++| ......+++..+
T Consensus 445 Gd~FGE~~~--------l~~~p-~~~t~ra~~~s~ll~l~~~~f~~ll~~~p-~d~~~i~~~~l~ 499 (823)
T PLN03192 445 GDIFGEVGA--------LCCRP-QSFTFRTKTLSQLLRLKTSTLIEAMQTRQ-EDNVVILKNFLQ 499 (823)
T ss_pred CCEecchHH--------hcCCC-CCCeEEEcccEEEEEEEHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence 999999855 57778 89999999999999999999999999999 666665555444
No 3
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-67 Score=548.83 Aligned_cols=477 Identities=19% Similarity=0.316 Sum_probs=392.9
Q ss_pred CCCCCC-CCCC-CCCCCCCceeCCCChhHHhHHHHHHHHHHHHHhhhhhhhhhhheecCCCCCCCcceecCcchhHHHHH
Q 005964 49 AAGSPL-PQSR-PDYQTRTRILDPRCDFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTV 126 (667)
Q Consensus 49 ~~~~~l-~~~~-~~~~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (667)
.-|+|+ ||.| +.+|+++.||..++.|+-+||++++++.+|+++++|+ .++|+ +++. ....|.+
T Consensus 189 ~Lg~DilPQYrQEaPKTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPy---NvaFK---nk~~---------~~vs~lv 253 (971)
T KOG0501|consen 189 QLGSDILPQYRQEAPKTPPHIILHYCAFKTIWDWVILILTFYTAIMVPY---NVAFK---NKQR---------NNVSWLV 253 (971)
T ss_pred HhccccchhhhhcCCCCCCeEEEeeehhhhHHHHHHHHHHHHHHheeee---eeeec---cccc---------CceeEEE
Confidence 345554 9986 7788899999999999999999999999999999995 66663 3321 1235778
Q ss_pred HHHHHHHHHHHHHHHHhceeEEcCCcccccCCeEeecHHHHHHhhhcCCcchHHHHHhhcchhhhhhhhccccccchhhH
Q 005964 127 IRTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIKEDRM 206 (667)
Q Consensus 127 ~~~~~D~if~~Di~l~f~t~y~~~~s~~~~~g~~V~d~~~Ia~~Ylks~~~F~~Dlls~lP~~~i~~~~~~~~~~~~~~~ 206 (667)
++.++|+||++||++||+|.|+.+ .||+|.||+.|+.+|+|+ ||++|++||+|++++..+-.. +..+
T Consensus 254 vDSiVDVIF~vDIvLNFHTTFVGP------gGEVvsdPkvIRmNYlKs--WFvIDLLSCLPYDi~naF~~~-----degI 320 (971)
T KOG0501|consen 254 VDSIVDVIFFVDIVLNFHTTFVGP------GGEVVSDPKVIRMNYLKS--WFVIDLLSCLPYDIFNAFERD-----DEGI 320 (971)
T ss_pred ecchhhhhhhhhhhhhcceeeecC------CCceecChhHHhHHHHHH--HHHHHHHhcccHHHHHHhhcc-----cccH
Confidence 999999999999999999999999 699999999999999999 999999999999987654321 1111
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHhhhcc
Q 005964 207 KLIMTILILVILFQFLPKVYHSLCLMRRMRKVTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCEN 286 (667)
Q Consensus 207 ~~~~~~l~l~~l~~~Llkl~r~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ll~~H~~aC~wy~i~~~~~~~c~~~~c~~ 286 (667)
.. || .-+|+.|++|+-+..++..+|+...+ +.+++++++|.+++||+||+||.||..+.-.
T Consensus 321 ~S---------LF-SaLKVVRLLRLGRVaRKLD~YlEYGA-A~LvLLlC~y~lvAHWlACiWysIGd~ev~~-------- 381 (971)
T KOG0501|consen 321 GS---------LF-SALKVVRLLRLGRVARKLDHYLEYGA-AVLVLLLCVYGLVAHWLACIWYSIGDYEVRD-------- 381 (971)
T ss_pred HH---------HH-HHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHhheeccchheec--------
Confidence 11 22 23455555555555555555653333 2467788899999999999999999865421
Q ss_pred CCCCCCccccccCCCCCCCccccccccccCCCCCCCccccccccccccccCCchhhHHHHHHHHHHHHhhccCccccCCC
Q 005964 287 SKSCDFPVSCSKVYHKSEFPLALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPTS 366 (667)
Q Consensus 287 ~~~c~~~l~~~~~~~~~~w~~~sw~~~~~c~~~~~~~~~g~y~~~~~~~~~~s~~~~Yl~slYwa~~TlttvGygd~~~~ 366 (667)
.-.+. -..+||+.+.. .+...+|+|- ....-.....+|....|+.|+||.++.|||||+|.+.|.
T Consensus 382 --------~~~n~-----i~~dsWL~kLa-~~~~tpY~~~-~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~ 446 (971)
T KOG0501|consen 382 --------EMDNT-----IQPDSWLWKLA-NDIGTPYNYN-LSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPN 446 (971)
T ss_pred --------ccccc-----cccchHHHHHH-hhcCCCceec-cCCCceeecCCcccceehhhhhhhhhhhhcccccccCCC
Confidence 11111 22457776531 2234455543 111111244677788999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc-CCCH
Q 005964 367 NVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATM-GEDE 445 (667)
Q Consensus 367 n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~~rV~~y~~~~~~~~-~~de 445 (667)
+..|++|++++|++|.++||.|+|+++.|+|++.+...+|+++++++.+|||-.++|++|.+||.+|.--.|..+ |+|.
T Consensus 447 TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDT 526 (971)
T KOG0501|consen 447 TDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDT 526 (971)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHhhCChhHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEc
Q 005964 446 LDWIEDLPQGLRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSL 525 (667)
Q Consensus 446 ~~il~~Lp~~Lr~~i~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~ 525 (667)
++++...|.++|.+|.-|+.++..+.+|.|+-.|+.++++++..++.....|||.|++.||..+.++||++|.+++.+
T Consensus 527 eKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQ-- 604 (971)
T KOG0501|consen 527 EKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQ-- 604 (971)
T ss_pred HHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEee--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCeEEEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHH
Q 005964 526 SKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKR 599 (667)
Q Consensus 526 ~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~ 599 (667)
| .|+++.++.||.||+.. |.- .....+.++++|++.|.+..|.++.+.++++-|. ++++..-++
T Consensus 605 -D-DEVVAILGKGDVFGD~F--WK~-----~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYt-AFanSFaRN 668 (971)
T KOG0501|consen 605 -D-DEVVAILGKGDVFGDEF--WKE-----NTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYT-AFANSFARN 668 (971)
T ss_pred -c-CcEEEEeecCccchhHH--hhh-----hhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHH-HHHHHhhhc
Confidence 2 35689999999999973 321 1222367999999999999999999999999998 888765544
No 4
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-64 Score=521.93 Aligned_cols=421 Identities=21% Similarity=0.289 Sum_probs=355.9
Q ss_pred HHHHHHHHhhhhhhhhhhheecCCCCCCCcceecCcchhHHHHHHHHHHHHHHHHHHHHHhceeEEcCCcccccCCeEee
Q 005964 83 LLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVW 162 (667)
Q Consensus 83 ~~~~~~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~if~~Di~l~f~t~y~~~~s~~~~~g~~V~ 162 (667)
.+.++|++++++..+.+.-+ ..+....|..+|++.|++|++||++++||+|+++ |.+|.
T Consensus 4 s~~vLYN~~~li~r~~F~di--------------~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleq-------GllV~ 62 (536)
T KOG0500|consen 4 SLGVLYNMIVLIVRAAFDDI--------------QSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQ-------GLLVK 62 (536)
T ss_pred EEehHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhc-------Ceeeh
Confidence 35678899888863323222 1233457899999999999999999999999995 99999
Q ss_pred cHHHHHHhhhcCCcchHHHHHhhcchhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcccc
Q 005964 163 DARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIKEDRMKLIMTILILVILFQFLPKVYHSLCLMRRMRKVTGYI 242 (667)
Q Consensus 163 d~~~Ia~~Ylks~~~F~~Dlls~lP~~~i~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~Llkl~r~~~l~~~l~~~~~~~ 242 (667)
|-++.++||..| ..|.+|++|++|+++++++....+. .| +.|++|++|++..+.+-+..+.|.
T Consensus 63 ~~~Kl~~hY~~s-~~f~lD~l~liP~D~l~~~~~~~~~------------~r----~nRllk~yRl~~F~~rTetrT~~P 125 (536)
T KOG0500|consen 63 DTSKLRKHYVHS-TQFKLDVLSLIPLDLLLFKDGSASL------------ER----LNRLLKIYRLFEFFDRTETRTTYP 125 (536)
T ss_pred hhHHHHHHHHHh-hhhhhhhhhhcchhHHhhcCCcchH------------HH----HHHHHHHHHHHHHHHHhccccCCc
Confidence 999999999999 4999999999999998876432211 11 237888889988888888888876
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHhhhccCCCCCCccccccCCCCCCCccccccccccCCCCCCC
Q 005964 243 FGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSCSKVYHKSEFPLALMVGKSSCLDDDGP 322 (667)
Q Consensus 243 ~~~~~~~~~~~l~~~ll~~H~~aC~wy~i~~~~~~~c~~~~c~~~~~c~~~l~~~~~~~~~~w~~~sw~~~~~c~~~~~~ 322 (667)
+ .+++.+++...+++.||.||++|+|+.. .+++.| +|.+.+. .++
T Consensus 126 n---~fri~~lv~~~~ilfHWNaClYf~iS~~-----------------------~g~~~d-----~wvY~~i----~d~ 170 (536)
T KOG0500|consen 126 N---AFRISKLVHYCLILFHWNACLYFLISKA-----------------------IGFTTD-----DWVYPKI----NDP 170 (536)
T ss_pred h---HHHHHHHHHHHHHHHHHhhHHHHhhhHh-----------------------cCcccc-----ccccCCc----cCc
Confidence 4 2356666677788999999999999863 235544 3554310 011
Q ss_pred ccccccccccccccCCchhhHHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005964 323 YRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMAR 402 (667)
Q Consensus 323 ~~~g~y~~~~~~~~~~s~~~~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~ 402 (667)
.| ..-...++.++|++|+||+..||||+|.-..|.+ ..|.+|.|+-.++|+++||.|+|++++++.++++.
T Consensus 171 ----~~----~~c~~~n~~ReY~~S~YWStLTlTTiGe~P~P~t-~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~ 241 (536)
T KOG0500|consen 171 ----EF----ATCDAGNLTREYLYSLYWSTLTLTTIGEQPPPVT-SSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAA 241 (536)
T ss_pred ----cc----cccchhHHHHHHHHHHHHHhhhhhhccCCCCCCc-CchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHH
Confidence 00 0112256889999999999999999998655555 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc-CCCHHHHHhhCChhHHHHHHHHHHHHHhhcCCCCCCCCHH
Q 005964 403 RKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATM-GEDELDWIEDLPQGLRRDIKRYLCLDLVKKVPLFHCLDDL 481 (667)
Q Consensus 403 ~~~~~~~~~~v~~~m~~~~lp~~L~~rV~~y~~~~~~~~-~~de~~il~~Lp~~Lr~~i~~~l~~~~l~~v~lF~~ls~~ 481 (667)
+.+||.+|+.+++||+.|++|+.|+.||.+||.|.|.+. ..||+++++.||+.|+.+|+.+++.+.|+++++|+.+++.
T Consensus 242 r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~ 321 (536)
T KOG0500|consen 242 RTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAG 321 (536)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchh
Confidence 999999999999999999999999999999999999999 8899999999999999999999999999999999999999
Q ss_pred HHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCCCCCCCCc
Q 005964 482 VLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPAS 561 (667)
Q Consensus 482 ~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~ 561 (667)
++.+++.+++++.|.|||+|+++||.+++||+|.+|.+++.. +||.++...+.+|++|||..+++- +.+ .+..+|
T Consensus 322 lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~--dDg~t~~~~L~~G~~FGEisIlni-~g~--~~gNRR 396 (536)
T KOG0500|consen 322 LLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVA--DDGVTVFVTLKAGSVFGEISILNI-KGN--KNGNRR 396 (536)
T ss_pred HHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEe--cCCcEEEEEecCCceeeeeEEEEE-cCc--ccCCcc
Confidence 999999999999999999999999999999999999999964 688777889999999999988641 111 124458
Q ss_pred ceEEEEeeeceEEeeCHHHHHHHHHHcHH
Q 005964 562 PATFTCMESVEAYGLNASDLRYIADHFRY 590 (667)
Q Consensus 562 ~~tv~A~~~~~l~~L~~~df~~l~~~~p~ 590 (667)
+++++++..+++++|+++|+-+++++||+
T Consensus 397 tanvrSvGYSDlfvLskdDl~~aL~eYP~ 425 (536)
T KOG0500|consen 397 TANVRSVGYSDLFVLSKDDLWEALSEYPD 425 (536)
T ss_pred eeeeeeeccceeeEeeHHHHHHHHHhCCH
Confidence 99999999999999999999999999993
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-56 Score=468.35 Aligned_cols=435 Identities=18% Similarity=0.258 Sum_probs=370.9
Q ss_pred CCceeCCCC-hhHHhHHHHHHHHHHHHHhhhhhhhhhhheecCCCCCCCcceecCcchhHHHHHHHHHHHHHHHHHHH-H
Q 005964 64 RTRILDPRC-DFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWHLW-L 141 (667)
Q Consensus 64 ~~~ii~P~s-~~~~~W~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~if~~Di~-l 141 (667)
.+..|||+. ++...|-.++.++..|++|++|+...++.. ++ ...-.|.+.+.++|+|+++||+ +
T Consensus 216 ~~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQ--T~------------dN~~~Wli~Dy~cDiIYllDmlf~ 281 (815)
T KOG0499|consen 216 LPNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQ--TA------------DNIHYWLIADYICDIIYLLDMLFI 281 (815)
T ss_pred CCcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCcc--cc------------ccchhhhhHHHHhhHHHHHHHhhh
Confidence 478999998 999999999999999999999995433322 11 1123688999999999999995 7
Q ss_pred HhceeEEcCCcccccCCeEeecHHHHHHhhhcCCcchHHHHHhhcchhhhhhhhccccccchhhHHHHHHHHHHHHHHhh
Q 005964 142 QFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIKEDRMKLIMTILILVILFQF 221 (667)
Q Consensus 142 ~f~t~y~~~~s~~~~~g~~V~d~~~Ia~~Ylks~~~F~~Dlls~lP~~~i~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~ 221 (667)
+-|..|+-. |.+|.|.+..++||+++. .|-+|++|++|++++++.++..++. | +.|
T Consensus 282 q~Rl~fvrg-------G~~ik~kndtrk~Yl~sr-~FklDllsiLPldllY~~~G~~p~w------------R----~~R 337 (815)
T KOG0499|consen 282 QPRLQFVRG-------GDIIKDKNDTRKHYLTSR-KFKLDLLSILPLDLLYLFFGFNPMW------------R----ANR 337 (815)
T ss_pred hhhheeeeC-------ceEEEechHHHHHHHHhh-hhhhhHHhhhhHHHHHHHhccchhh------------h----hhh
Confidence 778888874 999999999999999994 9999999999999998887654432 1 124
Q ss_pred hHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHhhhccCCCCCCccccccCCC
Q 005964 222 LPKVYHSLCLMRRMRKVTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSCSKVYH 301 (667)
Q Consensus 222 Llkl~r~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ll~~H~~aC~wy~i~~~~~~~c~~~~c~~~~~c~~~l~~~~~~~ 301 (667)
++|.--++.+++.+.+...- ....+++..+-..++++|+.||++|+.+.++ ++|
T Consensus 338 ~lK~~sF~e~~~~Le~i~s~---~y~~RV~rT~~YmlyilHinacvYY~~Sayq-----------------------glG 391 (815)
T KOG0499|consen 338 MLKYTSFFEFNHHLESIMSK---AYIYRVIRTTGYLLYILHINACVYYWASAYQ-----------------------GLG 391 (815)
T ss_pred HHHHHHHHHHHHHHHHHhcc---hhhhhhHHHHHHHHHHHhhhHHHHHHHHhhc-----------------------ccc
Confidence 45555566666666665331 2223556666667789999999999987642 122
Q ss_pred CCCCccccccccccCCCCCCCccccccccccccccCCchhhHHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHH
Q 005964 302 KSEFPLALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCG 381 (667)
Q Consensus 302 ~~~w~~~sw~~~~~c~~~~~~~~~g~y~~~~~~~~~~s~~~~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G 381 (667)
.+.|+.++ .| ..|++|+|||+-|++|+|....| .+..|++|..+--+.|
T Consensus 392 -----~~rWVydg-----~G--------------------n~YiRCyyfa~kt~~tiG~~P~P-~~~~E~Vf~~~~w~mG 440 (815)
T KOG0499|consen 392 -----TTRWVYDG-----EG--------------------NEYIRCYYFAVKTLITIGGLPEP-QTLFEIVFQLLNWFMG 440 (815)
T ss_pred -----cceeEEcC-----CC--------------------CceeeehhhHHHHHHHhcCCCCc-chHHHHHHHHHHHHHH
Confidence 67888653 22 37999999999999999985554 6689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc-CCCHHHHHhhCChhHHHHH
Q 005964 382 LTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATM-GEDELDWIEDLPQGLRRDI 460 (667)
Q Consensus 382 ~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~~rV~~y~~~~~~~~-~~de~~il~~Lp~~Lr~~i 460 (667)
+++|+.+||.|-.++.+.++.++.|+..|++.-.||++.+||++.|.||+.+|+|.|..+ ..||.+++..||..|+.++
T Consensus 441 VFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dl 520 (815)
T KOG0499|consen 441 VFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDL 520 (815)
T ss_pred HHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcchhheeee
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCe
Q 005964 461 KRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGF 540 (667)
Q Consensus 461 ~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~ 540 (667)
+..++...+.+|.+|++++.+.+..++.+++..+|.|||+|+++||++++||+|..|.|++.. +++|+.++..+.+|++
T Consensus 521 Ai~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlG-Gp~~~~Vl~tL~~GsV 599 (815)
T KOG0499|consen 521 AIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLG-GPDGTKVLVTLKAGSV 599 (815)
T ss_pred eEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEec-CCCCCEEEEEecccce
Confidence 999999999999999999999999999999999999999999999999999999999999985 5788888999999999
Q ss_pred EeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHH
Q 005964 541 LGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITR 602 (667)
Q Consensus 541 fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r 602 (667)
|||++|+. +.+..+|+++|+|...|.+++|+++|+.+++.+||+ ++..|++.+|
T Consensus 600 FGEISLLa------igG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~--sq~iLrkkAr 653 (815)
T KOG0499|consen 600 FGEISLLA------IGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPD--SQRILRKKAR 653 (815)
T ss_pred eeeeeeee------ecCCCccchhhhhcccceeeEecHhHHHHHHHhCcc--HHHHHHHHHH
Confidence 99998853 355666999999999999999999999999999993 3444444433
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.54 E-value=1.4e-13 Score=139.79 Aligned_cols=131 Identities=13% Similarity=0.148 Sum_probs=114.8
Q ss_pred HHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccch
Q 005964 467 DLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELL 546 (667)
Q Consensus 467 ~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~L 546 (667)
+.++.+|+|..++++.++.+....+.+.|++|+.|+++||.++.+|+|.+|.++++....+|...+..+.+|++||+.++
T Consensus 7 ~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~ 86 (236)
T PRK09392 7 IRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAV 86 (236)
T ss_pred HHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHH
Confidence 57889999999999999999999999999999999999999999999999999998765444445889999999999844
Q ss_pred hhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHHHHHhh
Q 005964 547 SWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYYSSN 607 (667)
Q Consensus 547 l~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r~ys~~ 607 (667)
+.+.| +.++++|+++|+++.+++++|.+++.++| .+....++...+.+...
T Consensus 87 --------~~~~~-~~~~~~A~~~~~~~~i~~~~~~~l~~~~p-~l~~~~~~~l~~~~~~~ 137 (236)
T PRK09392 87 --------VLDAP-YLMSARTLTRSRVLMIPAELVREAMSEDP-GFMRAVVFELAGCYRGL 137 (236)
T ss_pred --------hCCCC-CceEEEEcCceEEEEEeHHHHHHHHHHCH-HHHHHHHHHHHHHHHHH
Confidence 57778 89999999999999999999999999999 78877766655544333
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.46 E-value=2.7e-12 Score=127.84 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhhccCCCC
Q 005964 476 HCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSWCLRRPF 554 (667)
Q Consensus 476 ~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~~l~~sf 554 (667)
+.+|++.++.++..++.+.|++|+.|+.+||+++.+|||.+|.++++..+.+|++. +..+.+|++||+..+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~-------- 77 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL-------- 77 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhh--------
Confidence 46899999999999999999999999999999999999999999999887888765 889999999999854
Q ss_pred CCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHH
Q 005964 555 KDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRI 600 (667)
Q Consensus 555 ~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~ 600 (667)
+.+.+.+..+++|.++|+++.+++++|.+++.++| .+....++..
T Consensus 78 ~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~~ 122 (211)
T PRK11753 78 FEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNP-DILMALSAQM 122 (211)
T ss_pred ccCCCCceEEEEEcCcEEEEEEcHHHHHHHHHHCH-HHHHHHHHHH
Confidence 34432268899999999999999999999999999 6665544433
No 8
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.1e-12 Score=139.43 Aligned_cols=187 Identities=15% Similarity=0.217 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhceeEEcCCcccccCCeEeecHHHHHHhhhcCCcchHHHHHhhcchhhhhhhhccccccc
Q 005964 123 IVTVIRTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIK 202 (667)
Q Consensus 123 ~~~~~~~~~D~if~~Di~l~f~t~y~~~~s~~~~~g~~V~d~~~Ia~~Ylks~~~F~~Dlls~lP~~~i~~~~~~~~~~~ 202 (667)
.+..++.++-++|-+..+++|..+ ++ ..+++|++ -=++|++|++||++=+....... .+
T Consensus 241 ~l~~vE~vCi~WFT~E~llR~~~~---P~----------------k~~F~k~p-LNIIDllAIlPFYielll~~~~~-~~ 299 (477)
T KOG3713|consen 241 ILTYVETVCIAWFTFEYLLRFLVA---PN----------------KLEFFKSP-LNIIDLLAILPFYLELLLTLFGG-ES 299 (477)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcC---ch----------------HHHHHhCc-chHHHHHHHHHHHHHHHHHHhcc-ch
Confidence 578999999999999999999543 31 45788874 67999999999987443322211 00
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhh---ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhH
Q 005964 203 EDRMKLIMTILILVILFQFLPKVYHSLCLMRRMRKV---TGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSC 279 (667)
Q Consensus 203 ~~~~~~~~~~l~l~~l~~~Llkl~r~~~l~~~l~~~---~~~~~~~~~~~~~~~l~~~ll~~H~~aC~wy~i~~~~~~~c 279 (667)
.....+....+|++ |++|++|+++|-++-.-. ..-+..+ ...+.+++++..+.+-+++.+-|++-..+.
T Consensus 300 ~~~l~~~~~vvrvl----R~lRI~RI~KLaRhS~GLr~lg~Tlr~S-~~ElglLllfL~~GI~iFStlvY~~Ek~~~--- 371 (477)
T KOG3713|consen 300 LKELENAGLVVRVL----RVLRILRIFKLARHSTGLRTLGLTLRRS-YRELGLLLLFLAVGIVIFSTLVYFAEKDEP--- 371 (477)
T ss_pred HHHHhhhhhhHHHH----HHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCC---
Confidence 00111122223222 344444444444332211 1111111 112333333344556667777777532110
Q ss_pred HHhhhccCCCCCCccccccCCCCCCCccccccccccCCCCCCCccccccccccccccCCchhhHHHHHHHHHHHHhhccC
Q 005964 280 LQQQCENSKSCDFPVSCSKVYHKSEFPLALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFG 359 (667)
Q Consensus 280 ~~~~c~~~~~c~~~l~~~~~~~~~~w~~~sw~~~~~c~~~~~~~~~g~y~~~~~~~~~~s~~~~Yl~slYwa~~TlttvG 359 (667)
+.+| ...-.++|||+.||||||
T Consensus 372 ----------------------------------------~~~F------------------tSIPa~~WWaiVTMTTVG 393 (477)
T KOG3713|consen 372 ----------------------------------------DTKF------------------TSIPAGFWWAVVTMTTVG 393 (477)
T ss_pred ----------------------------------------CCCC------------------ccccchhheeeEEEeeec
Confidence 0011 112278899999999999
Q ss_pred ccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005964 360 NELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSL 396 (667)
Q Consensus 360 ygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il 396 (667)
|||+.|.++..++++..++++|+++.|+-|..|-+=.
T Consensus 394 YGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF 430 (477)
T KOG3713|consen 394 YGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNF 430 (477)
T ss_pred ccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhH
Confidence 9999999999999999999999999998776655543
No 9
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.42 E-value=1.9e-12 Score=114.21 Aligned_cols=110 Identities=28% Similarity=0.487 Sum_probs=99.2
Q ss_pred CCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhhccCC
Q 005964 474 LFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSWCLRR 552 (667)
Q Consensus 474 lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~~l~~ 552 (667)
+|..++++.+..++..++.+.+.+|++|+.+|++.+.+|+|.+|.++++..+++|++. +..+.+|++||+..+
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~------ 74 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELAL------ 74 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHH------
Confidence 4778999999999999999999999999999999999999999999999888888664 888999999999854
Q ss_pred CCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHH
Q 005964 553 PFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLA 593 (667)
Q Consensus 553 sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~ 593 (667)
+.+.+ +..+++|.++|+++.+++++|.++++++| .+.
T Consensus 75 --~~~~~-~~~~~~a~~~~~~~~i~~~~~~~~~~~~~-~~~ 111 (115)
T cd00038 75 --LGNGP-RSATVRALTDSELLVLPRSDFRRLLQEYP-ELA 111 (115)
T ss_pred --hcCCC-CCceEEEcCceEEEEEeHHHHHHHHHHCc-HhH
Confidence 35556 78999999999999999999999999999 443
No 10
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.37 E-value=6.3e-12 Score=127.47 Aligned_cols=121 Identities=14% Similarity=0.247 Sum_probs=102.2
Q ss_pred hhcCCCCCCCCHHHHHHHhcccee-eEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccch
Q 005964 469 VKKVPLFHCLDDLVLDNICDRVKA-LIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELL 546 (667)
Q Consensus 469 l~~v~lF~~ls~~~l~~i~~~l~~-~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~L 546 (667)
+++.+.|..+++++++.+....+. +.|+||+.|+++||+++.+|+|.+|.|+++..+.+|++. +.++.+|++||+..+
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 555566667999999999988864 689999999999999999999999999999988889874 778899999998633
Q ss_pred hhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHH
Q 005964 547 SWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRI 600 (667)
Q Consensus 547 l~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~ 600 (667)
..+ + ...+++|+++|+++.+++++|++++.++| .+....++..
T Consensus 95 --------~~~-~-~~~~~~a~~~~~i~~ip~~~f~~l~~~~p-~~~~~~~~~~ 137 (235)
T PRK11161 95 --------GSG-Q-HPSFAQALETSMVCEIPFETLDDLSGKMP-KLRQQIMRLM 137 (235)
T ss_pred --------cCC-C-CcceEEEeccEEEEEEEHHHHHHHHHHCh-HHHHHHHHHH
Confidence 233 3 35689999999999999999999999999 7766655444
No 11
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.37 E-value=3.2e-12 Score=125.00 Aligned_cols=194 Identities=18% Similarity=0.241 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHHhceeEEcCCcccccCCeEeecHHHHHHhhhcCCcchHHHHHhhcchhhhhhhhccccccchhh
Q 005964 126 VIRTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIKEDR 205 (667)
Q Consensus 126 ~~~~~~D~if~~Di~l~f~t~y~~~~s~~~~~g~~V~d~~~Ia~~Ylks~~~F~~Dlls~lP~~~i~~~~~~~~~~~~~~ 205 (667)
+++.+.+++|.+|+++++.+.... +++|++++ |.++|+++++|....+.....+ ..+
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~------------------~~~y~~~~-~~~~d~~~~~~~~~~~~~~~~~----~~~ 57 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFK------------------RRRYFRSW-WNWFDFISVIPSIVSVILRSYG----SAS 57 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-------------------GCCCCSH-HHHHHHHHHHHHCCHHCCHCSS------H
T ss_pred CChHHHHHHHHHHHHHHHHHhccH------------------HHHHhcCh-hhcccccccccccccccccccc----ccc
Confidence 468899999999999999865321 77999994 8889999999986644332211 111
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHhhhc
Q 005964 206 MKLIMTILILVILFQFLPKVYHSLCLMRRMRKVTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCE 285 (667)
Q Consensus 206 ~~~~~~~l~l~~l~~~Llkl~r~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ll~~H~~aC~wy~i~~~~~~~c~~~~c~ 285 (667)
.....+.++++ |++|++|+.+..+.+++...-+. .....+.+.+++++++.|+.||+++.+.......|..
T Consensus 58 ~~~~~~~~~~l----~~~R~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~---- 128 (200)
T PF00520_consen 58 AQSLLRIFRLL----RLLRLLRLLRRFRSLRRLLRALI-RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCD---- 128 (200)
T ss_dssp HCHCHHHHHHH----HHHHHHHHHHTTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS---------
T ss_pred ccceEEEEEee----ccccccccccccccccccccccc-cccccccccccccccccccccchhheecccccccccc----
Confidence 01112222222 12233333332222222222112 2233455666777889999999999886532211100
Q ss_pred cCCCCCCccccccCCCCCCCccccccccccCCCCCCCccccccccccccccCCchhhHHHHHHHHHHHHhhccCccccCC
Q 005964 286 NSKSCDFPVSCSKVYHKSEFPLALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPT 365 (667)
Q Consensus 286 ~~~~c~~~l~~~~~~~~~~w~~~sw~~~~~c~~~~~~~~~g~y~~~~~~~~~~s~~~~Yl~slYwa~~TlttvGygd~~~ 365 (667)
. .+. +.. .....+....|..|+||++.++|+.|+|+..+
T Consensus 129 ---------------------~-~~~-------~~~------------~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~ 167 (200)
T PF00520_consen 129 ---------------------P-TWD-------SEN------------DIYGYENFDSFGESLYWLFQTMTGEGWGDVMP 167 (200)
T ss_dssp ------------------------SS-----------------------SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHH
T ss_pred ---------------------c-ccc-------ccc------------ccccccccccccccccccccccccCCcccccc
Confidence 0 000 000 01233456789999999999999999998877
Q ss_pred C-----chhhHHHH-HHHHHHHHHHHHHHHHHH
Q 005964 366 S-----NVLEVMFS-ICIVLCGLTLFTLLVGNI 392 (667)
Q Consensus 366 ~-----n~~E~i~~-i~i~i~G~~~fa~iig~i 392 (667)
. +..+.++. +++.+.+.++++.++|.|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 168 SCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 5 77899998 777777779999999876
No 12
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.36 E-value=7.5e-12 Score=126.22 Aligned_cols=113 Identities=20% Similarity=0.273 Sum_probs=97.4
Q ss_pred CHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhhccCCCCCCC
Q 005964 479 DDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSWCLRRPFKDR 557 (667)
Q Consensus 479 s~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~~l~~sf~~~ 557 (667)
.+-+..+|....+.+.|++|+.|+++||+++.+|||.+|.|+++..+.+|++. +.++.+|++||+.++ +.+
T Consensus 20 ~~~~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~--------~~~ 91 (226)
T PRK10402 20 KDCFSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIEL--------IDK 91 (226)
T ss_pred hhcCCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehh--------hcC
Confidence 33344567888899999999999999999999999999999999988899875 889999999999843 567
Q ss_pred CCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHH
Q 005964 558 LPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRIT 601 (667)
Q Consensus 558 ~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~ 601 (667)
.| +..+++|+++|+++.+++++|.+++.++| .+....++...
T Consensus 92 ~~-~~~~~~A~~~~~i~~i~~~~~~~ll~~~p-~~~~~~~~~l~ 133 (226)
T PRK10402 92 DH-ETKAVQAIEECWCLALPMKDCRPLLLNDA-LFLRKLCKFLS 133 (226)
T ss_pred CC-CCccEEEeccEEEEEEEHHHHHHHHhcCH-HHHHHHHHHHH
Confidence 77 89999999999999999999999999999 67665544443
No 13
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.34 E-value=2.6e-11 Score=107.54 Aligned_cols=109 Identities=25% Similarity=0.422 Sum_probs=96.9
Q ss_pred CCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhhccCC
Q 005964 474 LFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSWCLRR 552 (667)
Q Consensus 474 lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~~l~~ 552 (667)
+|.+++++.++.++..++.+.+++|++|+++||+.+.+|||.+|.++++..+.+|++. +..+.+|++||+..++-
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~---- 76 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLT---- 76 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhcc----
Confidence 4788999999999999999999999999999999999999999999999877777664 88999999999985420
Q ss_pred CCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcH
Q 005964 553 PFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 553 sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p 589 (667)
....| ...+++|.++|+++.++.+++......+|
T Consensus 77 --~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 110 (120)
T smart00100 77 --NSRRA-ASATAVALELATLLRIDFRDFLQLLQENP 110 (120)
T ss_pred --CCCcc-cceEEEEEeeEEEEccCHHHHHHHHHHhH
Confidence 13345 78999999999999999999999999998
No 14
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.32 E-value=7.2e-12 Score=106.47 Aligned_cols=88 Identities=27% Similarity=0.429 Sum_probs=81.1
Q ss_pred eEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEeeec
Q 005964 493 LIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESV 571 (667)
Q Consensus 493 ~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~ 571 (667)
+.|++|++|+++|+.++.+|||++|.++++..+.+|+.. +..+.+|++||+.++ +.+.| +..+++|.++|
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~--------~~~~~-~~~~~~a~~~~ 72 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIEL--------LTGKP-SPFTVIALTDS 72 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHH--------HHTSB-BSSEEEESSSE
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceee--------cCCCc-cEEEEEEccCE
Confidence 689999999999999999999999999999988888764 889999999999866 35557 89999999999
Q ss_pred eEEeeCHHHHHHHHHHcH
Q 005964 572 EAYGLNASDLRYIADHFR 589 (667)
Q Consensus 572 ~l~~L~~~df~~l~~~~p 589 (667)
+++.|++++|.++++++|
T Consensus 73 ~~~~i~~~~~~~~~~~~p 90 (91)
T PF00027_consen 73 EVLRIPREDFLQLLQQDP 90 (91)
T ss_dssp EEEEEEHHHHHHHHHHSH
T ss_pred EEEEEeHHHHHHHHHhCc
Confidence 999999999999999999
No 15
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.30 E-value=6.4e-11 Score=117.28 Aligned_cols=125 Identities=23% Similarity=0.355 Sum_probs=106.0
Q ss_pred hcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhh
Q 005964 470 KKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSW 548 (667)
Q Consensus 470 ~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~ 548 (667)
...+.|...+++....+....+.+.+++|+.|+++||+++.+|+|.+|.++++....+|++. +.++.+|++||+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l-- 80 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELAL-- 80 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHH--
Confidence 34566666777787787789999999999999999999999999999999999998889765 788999999999966
Q ss_pred ccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 005964 549 CLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYY 604 (667)
Q Consensus 549 ~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r~y 604 (667)
+.+.| +.++++|+++|+++.+++++|.+++.+.| .+....++...+-.
T Consensus 81 ------~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~p-~l~~~l~~~~~~~l 128 (214)
T COG0664 81 ------LGGDP-RSASAVALTDVEVLEIPRKDFLELLAESP-KLALALLRLLARRL 128 (214)
T ss_pred ------hcCCC-ccceEEEcceEEEEEecHHHHHHHHhhCc-HHHHHHHHHHHHHH
Confidence 35557 89999999999999999999999887777 66666655554433
No 16
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.24 E-value=1.1e-11 Score=131.29 Aligned_cols=128 Identities=20% Similarity=0.352 Sum_probs=108.9
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCC-CeE-EEEEcCCCCe
Q 005964 463 YLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSK-GKL-ATSVLGPGGF 540 (667)
Q Consensus 463 ~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~-g~~-~i~~l~~G~~ 540 (667)
.-+.++|+++|+|++++++.+..|++.++...|..|++|+++|+.++.+|+|.+|.|.+.+.++. +.+ .+..+..||+
T Consensus 268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~ 347 (732)
T KOG0614|consen 268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY 347 (732)
T ss_pred HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence 34568899999999999999999999999999999999999999999999999999999886543 222 2788999999
Q ss_pred EeccchhhccCCCCCCCCCCcceEEEEeee-ceEEeeCHHHHHHHHHHcHHHHHHHHHHHH
Q 005964 541 LGDELLSWCLRRPFKDRLPASPATFTCMES-VEAYGLNASDLRYIADHFRYKLADERLKRI 600 (667)
Q Consensus 541 fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~-~~l~~L~~~df~~l~~~~p~~~~~~~l~~~ 600 (667)
|||.+|+ ... .|++++.|.+. ++++.|+++.|..++-... .+..+.....
T Consensus 348 FGE~al~--------~ed-vRtAniia~~~gv~cl~lDresF~~liG~l~-~l~ek~~~D~ 398 (732)
T KOG0614|consen 348 FGERALL--------GED-VRTANIIAQAPGVECLTLDRESFKKLIGDLE-ELKEKDYGDE 398 (732)
T ss_pred hhHHHhh--------ccC-ccchhhhccCCCceEEEecHHHHHHhcccHH-Hhhhhhccch
Confidence 9999773 333 48999999998 9999999999999998876 5665444333
No 17
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.22 E-value=1e-10 Score=118.26 Aligned_cols=106 Identities=19% Similarity=0.186 Sum_probs=92.0
Q ss_pred HHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhhccCCCCCCCCCCcc
Q 005964 484 DNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSWCLRRPFKDRLPASP 562 (667)
Q Consensus 484 ~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~ 562 (667)
..+....+.+.|++|+.|+.+||+++.+|||.+|.|+++..+.+|++. +..+.+|++||+. .+.| +.
T Consensus 32 ~~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~-----------~~~~-~~ 99 (230)
T PRK09391 32 GHAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE-----------SGST-HR 99 (230)
T ss_pred ccccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc-----------CCCc-CC
Confidence 345666788999999999999999999999999999999988889874 7788999999965 3445 67
Q ss_pred eEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHH
Q 005964 563 ATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITR 602 (667)
Q Consensus 563 ~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r 602 (667)
++++|+++|+++.+++++|++++.++| .+....++...+
T Consensus 100 ~~~~A~~ds~v~~i~~~~f~~l~~~~p-~l~~~l~~~l~~ 138 (230)
T PRK09391 100 FTAEAIVDTTVRLIKRRSLEQAAATDV-DVARALLSLTAG 138 (230)
T ss_pred eEEEEcCceEEEEEEHHHHHHHHhhCh-HHHHHHHHHHHH
Confidence 999999999999999999999999999 777776665554
No 18
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.21 E-value=3.9e-10 Score=121.40 Aligned_cols=119 Identities=22% Similarity=0.287 Sum_probs=105.8
Q ss_pred HHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccc
Q 005964 466 LDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDEL 545 (667)
Q Consensus 466 ~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~ 545 (667)
.+++.++|.|..++++.+.+|...++...|.|||+|+..|.+.+.+|+|.+|.|++.. ++|+ ++..+.+|+.||-.+
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~--~~g~-v~~~~~~gdlFg~~~ 82 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS--DGGE-VLDRLAAGDLFGFSS 82 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc--CCCe-eeeeeccCccccchh
Confidence 4688999999999999999999999999999999999999999999999999999875 4555 689999999999985
Q ss_pred hhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHH
Q 005964 546 LSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERL 597 (667)
Q Consensus 546 Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l 597 (667)
| ++..+ ...+..|.+++.+|.|+++.|.++++++| .++.-..
T Consensus 83 l--------~~~~~-~~~~~~aeedsl~y~lp~s~F~ql~~~n~-~f~~ff~ 124 (610)
T COG2905 83 L--------FTELN-KQRYMAAEEDSLCYLLPKSVFMQLMEENP-EFADFFL 124 (610)
T ss_pred h--------cccCC-CcceeEeeccceEEecCHHHHHHHHHhCc-HHHHHHH
Confidence 5 56666 56788888899999999999999999999 6665433
No 19
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.19 E-value=1.2e-10 Score=127.90 Aligned_cols=113 Identities=19% Similarity=0.292 Sum_probs=102.4
Q ss_pred HHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccc
Q 005964 466 LDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDEL 545 (667)
Q Consensus 466 ~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~ 545 (667)
.+.++++++|++++++.++.++..++.+.|++|++|+++||.++.+|+|.+|.|+++..+.+|+..+..+.+|++||+.
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~- 85 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG- 85 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh-
Confidence 3567899999999999999999999999999999999999999999999999999998877886668889999999974
Q ss_pred hhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcH
Q 005964 546 LSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 546 Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p 589 (667)
+ .+.+ +..+++|.++|+++.|++++|..+...++
T Consensus 86 l---------~~~~-~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 86 L---------SGSV-HSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h---------CCCC-cccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 2 4556 78999999999999999999998887765
No 20
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.19 E-value=2.2e-11 Score=128.96 Aligned_cols=116 Identities=22% Similarity=0.362 Sum_probs=105.6
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCe
Q 005964 461 KRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGF 540 (667)
Q Consensus 461 ~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~ 540 (667)
.+.+-++.+++..++++++...+.+++.+|.+..|.+|+.|++|||+++.+|.+.+|.+++.. +|+. +..+++|..
T Consensus 148 ~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~---~g~l-l~~m~~gtv 223 (732)
T KOG0614|consen 148 AKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR---EGKL-LGKMGAGTV 223 (732)
T ss_pred HHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee---CCee-eeccCCchh
Confidence 455667888888999999999999999999999999999999999999999999999999975 5554 789999999
Q ss_pred EeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcH
Q 005964 541 LGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 541 fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p 589 (667)
|||.++++++. |+++|+|+++|.+|.|+++-|+.++..-.
T Consensus 224 FGELAILynct---------RtAsV~alt~~~lWaidR~vFq~IM~~tg 263 (732)
T KOG0614|consen 224 FGELAILYNCT---------RTASVRALTDVRLWAIDREVFQAIMMRTG 263 (732)
T ss_pred hhHHHHHhCCc---------chhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999987764 89999999999999999999999998765
No 21
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.17 E-value=4.4e-10 Score=110.17 Aligned_cols=96 Identities=18% Similarity=0.220 Sum_probs=82.5
Q ss_pred CcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhhccCCCCCCCCCC-cceEEEEeeeceEEe
Q 005964 498 DEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSWCLRRPFKDRLPA-SPATFTCMESVEAYG 575 (667)
Q Consensus 498 ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~-~~~tv~A~~~~~l~~ 575 (667)
|+.|+++||+.+.+|+|.+|.|+++..+++|++. +..+.+|++||+.++ +.+.+. +..+++|+++|+++.
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~--------~~~~~~~~~~~~~A~~~~~v~~ 72 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSL--------ITGHRSDRFYHAVAFTRVELLA 72 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeee--------ccCCCCccceEEEEecceEEEE
Confidence 7899999999999999999999999988899886 889999999999744 455541 357899999999999
Q ss_pred eCHHHHHHHHHHcHHHHHHHHHHHHHH
Q 005964 576 LNASDLRYIADHFRYKLADERLKRITR 602 (667)
Q Consensus 576 L~~~df~~l~~~~p~~~~~~~l~~~~r 602 (667)
+++++|++++.++| .+....++...+
T Consensus 73 i~~~~~~~l~~~~p-~l~~~~~~~l~~ 98 (193)
T TIGR03697 73 VPIEQVEKAIEEDP-DLSMLLLQGLSS 98 (193)
T ss_pred eeHHHHHHHHHHCh-HHHHHHHHHHHH
Confidence 99999999999999 777766655443
No 22
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.15 E-value=5.9e-11 Score=120.95 Aligned_cols=111 Identities=23% Similarity=0.318 Sum_probs=99.6
Q ss_pred HHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccc
Q 005964 466 LDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDEL 545 (667)
Q Consensus 466 ~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~ 545 (667)
.+.+++.-+|++++++.+.++.+.|.++.++.|+.|+++||.++.+|+|.+|.+.++. +|+ .+..+.+|..|||.+
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv---~~~-~v~~~~~g~sFGElA 196 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYV---NGT-YVTTYSPGGSFGELA 196 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEE---CCe-EEeeeCCCCchhhhH
Confidence 3567777899999999999999999999999999999999999999999999999986 343 478899999999998
Q ss_pred hhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcH
Q 005964 546 LSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 546 Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p 589 (667)
|+ .+.| |.+|+.|.+++.+|.|++..|..++-...
T Consensus 197 Lm--------yn~P-RaATv~a~t~~klWgldr~SFrrIi~~s~ 231 (368)
T KOG1113|consen 197 LM--------YNPP-RAATVVAKSLKKLWGLDRTSFRRIIMKSC 231 (368)
T ss_pred hh--------hCCC-cccceeeccccceEEEeeceeEEEeeccc
Confidence 85 5677 89999999999999999999998766554
No 23
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.11 E-value=1e-09 Score=108.44 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=73.5
Q ss_pred cceeeEecCCcEEEccCC--CcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhhccCCCCCCCCCCcceEE
Q 005964 489 RVKALIYSKDEKIIREGN--PVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSWCLRRPFKDRLPASPATF 565 (667)
Q Consensus 489 ~l~~~~~~~ge~Ii~~Gd--~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv 565 (667)
.++...|++|++|+++|| +++.+|+|.+|.|+++..+.+|++. +..+.+|++||+.++ .+.| ++.++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~---------~~~~-~~~~~ 74 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEAL---------AGAE-RAYFA 74 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHh---------cCCC-CCceE
Confidence 467889999999999999 7799999999999999998899875 788899999998633 2355 68899
Q ss_pred EEeeeceEEeeCHHHH
Q 005964 566 TCMESVEAYGLNASDL 581 (667)
Q Consensus 566 ~A~~~~~l~~L~~~df 581 (667)
+|+++|+++.+++++|
T Consensus 75 ~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 75 EAVTDSRIDVLNPALM 90 (202)
T ss_pred EEcCceEEEEEEHHHc
Confidence 9999999999999887
No 24
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.00 E-value=1.1e-10 Score=118.25 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 005964 346 YPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNI 392 (667)
Q Consensus 346 ~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i 392 (667)
.|+|||++|||||||||..|.+...+++..++.|.|++-.|.-+-.|
T Consensus 396 daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVI 442 (507)
T KOG1545|consen 396 DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVI 442 (507)
T ss_pred ccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEE
Confidence 68899999999999999999999999999999999999888755433
No 25
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.85 E-value=3.2e-09 Score=108.45 Aligned_cols=118 Identities=19% Similarity=0.343 Sum_probs=105.5
Q ss_pred HHHHHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCC
Q 005964 460 IKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGG 539 (667)
Q Consensus 460 i~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~ 539 (667)
-++.++.+.|+++|++..++..+...+++.+.++.|.+|+.|+.+|+.++.+|+|.+|.|.+.... +|.+ + .+..|+
T Consensus 233 kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~-~~v~-v-kl~~~d 309 (368)
T KOG1113|consen 233 KKRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR-DGVE-V-KLKKGD 309 (368)
T ss_pred hhhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhcc-CCeE-E-Eechhh
Confidence 346678899999999999999999999999999999999999999999999999999999987643 4422 4 999999
Q ss_pred eEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcH
Q 005964 540 FLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 540 ~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p 589 (667)
+|||.+| +.+.| +.+++.|.+...+..++++.|+.++.--.
T Consensus 310 yfge~al--------~~~~p-r~Atv~a~~~~kc~~~dk~~ferllgpc~ 350 (368)
T KOG1113|consen 310 YFGELAL--------LKNLP-RAATVVAKGRLKCAKLDKPRFERLLGPCQ 350 (368)
T ss_pred hcchHHH--------Hhhch-hhceeeccCCceeeeeChHHHHHHhhHHH
Confidence 9999987 47788 89999999999999999999999998543
No 26
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=98.83 E-value=2.9e-08 Score=82.66 Aligned_cols=55 Identities=16% Similarity=0.382 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQ 397 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~ 397 (667)
.|..++||+++|+||+||||+.|.+..+++++++.+++|+.++++.++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5779999999999999999999999899999999999999999999999999874
No 27
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.80 E-value=8.3e-08 Score=102.86 Aligned_cols=88 Identities=18% Similarity=0.376 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHc
Q 005964 341 ADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRR 420 (667)
Q Consensus 341 ~~~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~ 420 (667)
+..|-.|+||++.|+||+||||.+|.++..++.+.++.++|..+||.--|.+++=+.-.-+ ++ ..=++|-|++
T Consensus 267 F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQ------eq-~RQKHf~rrr 339 (654)
T KOG1419|consen 267 FPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQ------EQ-HRQKHFNRRR 339 (654)
T ss_pred chhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhH------HH-HHHHHHHhhc
Confidence 4578899999999999999999999999999999999999999999998888875532211 11 1124677888
Q ss_pred CCCHHHHHHHHHHHH
Q 005964 421 QLTSGLKWRVRHFER 435 (667)
Q Consensus 421 ~lp~~L~~rV~~y~~ 435 (667)
+.-..|.+-.-+||.
T Consensus 340 ~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 340 NPAASLIQCAWRYYA 354 (654)
T ss_pred chHHHHHHHHHHHHh
Confidence 888888877777765
No 28
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.37 E-value=2.2e-08 Score=102.59 Aligned_cols=183 Identities=14% Similarity=0.185 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhceeEEcCCcccccCCeEeecHHHHHHhhhcCCcchHHHHHhhcchhhhhhhhcccccc
Q 005964 122 LIVTVIRTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLI 201 (667)
Q Consensus 122 ~~~~~~~~~~D~if~~Di~l~f~t~y~~~~s~~~~~g~~V~d~~~Ia~~Ylks~~~F~~Dlls~lP~~~i~~~~~~~~~~ 201 (667)
..++.++..+-+||-.+.++++..| + . +.+++|+ -.=++|+++++|+++=+ +.+..
T Consensus 227 ~aFFclDTACVmIFT~EYlLRL~aA---P--------------s--R~rF~RS-vMSiIDVvAIlPYYigL---v~t~N- 282 (632)
T KOG4390|consen 227 VAFFCLDTACVMIFTGEYLLRLFAA---P--------------S--RYRFLRS-VMSIIDVVAILPYYIGL---VMTDN- 282 (632)
T ss_pred eeeEEecceeEEEeeHHHHHHHHcC---c--------------h--HHHHHHH-HHHHHHHhhhhhhheEE---EecCC-
Confidence 3456777777888888888887654 2 1 3466776 25589999999977522 22211
Q ss_pred chhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhh--hccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhH
Q 005964 202 KEDRMKLIMTILILVILFQFLPKVYHSLCLMRRMRK--VTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSC 279 (667)
Q Consensus 202 ~~~~~~~~~~~l~l~~l~~~Llkl~r~~~l~~~l~~--~~~~~~~~~~~~~~~~l~~~ll~~H~~aC~wy~i~~~~~~~c 279 (667)
.+.....-.| |+.|++|+++..+.-|. ..+|-.++-...+..+++...+++-++|-++|+.-.-
T Consensus 283 --~DVSGaFVTL-------RVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg----- 348 (632)
T KOG4390|consen 283 --EDVSGAFVTL-------RVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKG----- 348 (632)
T ss_pred --ccccceeEEE-------EeeeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcc-----
Confidence 1111110011 34455555554443322 2344322222234445555556666777777764210
Q ss_pred HHhhhccCCCCCCccccccCCCCCCCccccccccccCCCCCCCccccccccccccccCCchhhHHHHHHHHHHHHhhccC
Q 005964 280 LQQQCENSKSCDFPVSCSKVYHKSEFPLALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFG 359 (667)
Q Consensus 280 ~~~~c~~~~~c~~~l~~~~~~~~~~w~~~sw~~~~~c~~~~~~~~~g~y~~~~~~~~~~s~~~~Yl~slYwa~~TlttvG 359 (667)
. + .+.+...-.++|+.++||||.|
T Consensus 349 ----------------------~----~------------------------------at~FTsIPaaFWYTIVTmTTLG 372 (632)
T KOG4390|consen 349 ----------------------S----S------------------------------ATKFTSIPAAFWYTIVTMTTLG 372 (632)
T ss_pred ----------------------c----c------------------------------ccccccCcHhHhhheeeeeecc
Confidence 0 0 0111122378899999999999
Q ss_pred ccccCCCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 005964 360 NELEPTSNVLEVMFSICIVLCGLTLFTL----LVGNIQVSLQV 398 (667)
Q Consensus 360 ygd~~~~n~~E~i~~i~i~i~G~~~fa~----iig~i~~il~~ 398 (667)
|||+.|.+...++|..++.+.|+++.|. |++|++.|.++
T Consensus 373 YGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQ 415 (632)
T KOG4390|consen 373 YGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQ 415 (632)
T ss_pred ccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhh
Confidence 9999999999999999999999998886 56777777654
No 29
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.13 E-value=4.3e-06 Score=89.79 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005964 342 DTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMA 401 (667)
Q Consensus 342 ~~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~ 401 (667)
..|-.|+|+.++||+||||||+-.++...++|.++.++.|+.+||--+-.|..++.+-+.
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~k 346 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKK 346 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccc
Confidence 468899999999999999999999999999999999999999999999999999876543
No 30
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.99 E-value=1.1e-05 Score=91.30 Aligned_cols=135 Identities=16% Similarity=0.245 Sum_probs=104.4
Q ss_pred HHHHHHHHHhhcCCCC-CCC-------CHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeE-
Q 005964 460 IKRYLCLDLVKKVPLF-HCL-------DDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKL- 530 (667)
Q Consensus 460 i~~~l~~~~l~~v~lF-~~l-------s~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~- 530 (667)
+.+..+.+++.+.|.. -.+ =+.++..+-..+......+|+.++++||.++.+|+|..|.++.......|+.
T Consensus 470 isrs~l~~~~~~~p~I~L~ia~svl~~lsp~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~ 549 (1158)
T KOG2968|consen 470 ISRSDLERFLDAEPLIYLRIAHSVLRRLSPFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKE 549 (1158)
T ss_pred eeHHHHHHHHHhCceEEEehhhHHHHhcCHHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccch
Confidence 3444455566666622 111 1245566667778899999999999999999999999999998765445554
Q ss_pred EEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 005964 531 ATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYY 604 (667)
Q Consensus 531 ~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r~y 604 (667)
++..++.||.+|+... +++.| |..|+.|+.++++..|+.--|..+..+|| .+..+..+..++.+
T Consensus 550 i~~EygrGd~iG~~E~--------lt~~~-R~tTv~AvRdSelariPe~l~~~ik~ryP-~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 550 IVGEYGRGDLIGEVEM--------LTKQP-RATTVMAVRDSELARIPEGLLNFIKLRYP-QVVTRLIKLLAEKI 613 (1158)
T ss_pred hhhhccCcceeehhHH--------hhcCC-ccceEEEEeehhhhhccHHHHHHHHHhcc-HHHHHHHHHHHHHh
Confidence 6889999999999865 47788 89999999999999999999999999999 66665555555444
No 31
>PRK10537 voltage-gated potassium channel; Provisional
Probab=97.92 E-value=0.00014 Score=79.02 Aligned_cols=54 Identities=15% Similarity=0.351 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSL 396 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il 396 (667)
.+..|+||++.|+||+||||+.|.+...+++++++++.|+.+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466899999999999999999999889999999999999999999999887644
No 32
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=97.68 E-value=2.7e-05 Score=63.59 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=32.0
Q ss_pred CCCCceeCCCChhHHhHHHHHHHHHHHHHhhhhhh
Q 005964 62 QTRTRILDPRCDFVQKLNRVLLLARGIALAVDPLF 96 (667)
Q Consensus 62 ~~~~~ii~P~s~~~~~W~~~~~~~~~~~~~~~Pl~ 96 (667)
+...+||||+|.||.+||.+++++++++++++|+.
T Consensus 33 ~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~ 67 (77)
T PF08412_consen 33 SSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFR 67 (77)
T ss_pred cCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34577999999999999999999999999999973
No 33
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.52 E-value=0.0061 Score=65.20 Aligned_cols=90 Identities=18% Similarity=0.170 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHc
Q 005964 341 ADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRR 420 (667)
Q Consensus 341 ~~~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~ 420 (667)
...|+.|+|....|..++||||+.|.+...+..+++.-++|+...|.+++.++.=+.-..+ -..+++||-..
T Consensus 285 ~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKLeLt~a--------EKhVhNFMmDt 356 (489)
T KOG3684|consen 285 TINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKLELTKA--------EKHVHNFMMDT 356 (489)
T ss_pred HHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 3579999999999999999999999989999999999999999999999888764433222 23355555555
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 005964 421 QLTSGLKWRVRHFERQRW 438 (667)
Q Consensus 421 ~lp~~L~~rV~~y~~~~~ 438 (667)
++-++++.-..+=++..|
T Consensus 357 qLTk~~KnAAA~VLqeTW 374 (489)
T KOG3684|consen 357 QLTKEHKNAAANVLQETW 374 (489)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555554444433333333
No 34
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.46 E-value=0.00097 Score=70.74 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhhccCccc--cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005964 343 TILYPIFWGLLNLSSFGNEL--EPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSL 396 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd--~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il 396 (667)
.+..++++++.|+||+|||. +++....-.++.++=+++|.++.|+++|.+-+=+
T Consensus 84 ~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~ 139 (336)
T PF01007_consen 84 SFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARF 139 (336)
T ss_dssp THHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57799999999999999997 4555556667777888999999999998765433
No 35
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=96.72 E-value=0.0034 Score=69.02 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005964 344 ILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVV 399 (667)
Q Consensus 344 Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~ 399 (667)
+..|+|++.+++||+|||++.|.+...++++|+..++|.=++..++++++..+...
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~ 171 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADS 171 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999998889999999999999999999999999998654
No 36
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.68 E-value=0.093 Score=48.40 Aligned_cols=104 Identities=18% Similarity=0.220 Sum_probs=78.0
Q ss_pred CCCHHHHHHHhcc-ceeeEecCCcEEEccC-CCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCC
Q 005964 477 CLDDLVLDNICDR-VKALIYSKDEKIIREG-NPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPF 554 (667)
Q Consensus 477 ~ls~~~l~~i~~~-l~~~~~~~ge~Ii~~G-d~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf 554 (667)
+.+....+.|+.+ .+.....+|+.-.-|| .+.+.+-++++|.+++.. +|+. +..+.|.+|...-.. .+.
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~---~g~f-LH~I~p~qFlDSPEW-----~s~ 84 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC---DGRF-LHYIYPYQFLDSPEW-----ESL 84 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE---CCEe-eEeecccccccChhh-----hcc
Confidence 4688888888887 6678899999998888 456899999999999975 6654 344455554443221 011
Q ss_pred -CCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcH
Q 005964 555 -KDRLPASPATFTCMESVEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 555 -~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p 589 (667)
.+....-..|+.|.++|..+.-+|+.+..++.+.|
T Consensus 85 ~~s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~ 120 (153)
T PF04831_consen 85 RPSEDDKFQVTITAEEDCRYLCWPREKLYLLLAKDP 120 (153)
T ss_pred ccCCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCH
Confidence 01222367899999999999999999999999999
No 37
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=96.64 E-value=0.016 Score=66.58 Aligned_cols=102 Identities=11% Similarity=0.118 Sum_probs=82.9
Q ss_pred HHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhhccCCCCCCCC--CCc
Q 005964 485 NICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSWCLRRPFKDRL--PAS 561 (667)
Q Consensus 485 ~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~~l~~sf~~~~--p~~ 561 (667)
+++..++...+..|++|++.|++.+.+|.+.+|.+.++....+|++. +....+|+-|....-+.+ + +.+. +.+
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd---~-l~~~ps~~~ 185 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILD---S-LPGFPSLSR 185 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHH---h-ccCCCcccc
Confidence 34477888899999999999999999999999999998877788875 888999987765421111 1 1222 236
Q ss_pred ceEEEEeeeceEEeeCHHHHHHHHHHcHH
Q 005964 562 PATFTCMESVEAYGLNASDLRYIADHFRY 590 (667)
Q Consensus 562 ~~tv~A~~~~~l~~L~~~df~~l~~~~p~ 590 (667)
+..++|.++|.+..++.+.|..+..+||+
T Consensus 186 ~i~akA~t~~tv~~~p~~sF~~~~~k~P~ 214 (1158)
T KOG2968|consen 186 TIAAKAATDCTVARIPYTSFRESFHKNPE 214 (1158)
T ss_pred eeeeeeecCceEEEeccchhhhhhccChH
Confidence 78899999999999999999999999994
No 38
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.61 E-value=0.049 Score=53.43 Aligned_cols=95 Identities=7% Similarity=0.070 Sum_probs=71.3
Q ss_pred HHHHhccceeeEecCCcEE-EccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCCCCCCCCc
Q 005964 483 LDNICDRVKALIYSKDEKI-IREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPAS 561 (667)
Q Consensus 483 l~~i~~~l~~~~~~~ge~I-i~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~ 561 (667)
.+.+...-++..+.+|..+ ....+..+..++|.+|.+.+.. .|| ..+.....-..||-... ..+.. .
T Consensus 15 ~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr--~d~-ll~~t~~aP~IlGl~~~--------~~~~~-~ 82 (207)
T PRK11832 15 DKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR--EEN-VLIGITQAPYIMGLADG--------LMKND-I 82 (207)
T ss_pred HHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe--cCC-eEEEeccCCeEeecccc--------cCCCC-c
Confidence 3455666677899999997 4333344679999999999943 355 45677788888987522 22333 3
Q ss_pred ceEEEEeeeceEEeeCHHHHHHHHHHcH
Q 005964 562 PATFTCMESVEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 562 ~~tv~A~~~~~l~~L~~~df~~l~~~~p 589 (667)
.+.++|.++|+++.+++++|.++++++.
T Consensus 83 ~~~l~ae~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 83 PYKLISEGNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred eEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence 5789999999999999999999999886
No 39
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.30 E-value=0.18 Score=58.54 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=58.1
Q ss_pred CceeCCCChhHH---------hHHHHHHHHHHHHHhhhhhhhhhhheecCCCCCCCcceecCcchhHHHHHHHHHHHHHH
Q 005964 65 TRILDPRCDFVQ---------KLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVH 135 (667)
Q Consensus 65 ~~ii~P~s~~~~---------~W~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~if 135 (667)
..++.|+++||. ..|.+++++++++++.+-+ ..+.+ .|..++. ..+.+-+.+..+||
T Consensus 1104 ~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtial--erp~i--~~~s~Er----------iFltlsnyIFtaIf 1169 (1956)
T KOG2302|consen 1104 KYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIAL--ERPAI--VEGSTER----------IFLTLSNYIFTAIF 1169 (1956)
T ss_pred HHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHh--ccccc--ccCcceE----------EEEEecchHHHHHH
Confidence 679999999985 4677788888888887775 24433 1122111 12334458888999
Q ss_pred HHHHHHHhc-eeEEcCCcccccCCeEeecHHHHHHhhhcCCcchHHHHHhh
Q 005964 136 LWHLWLQFR-LAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVI 185 (667)
Q Consensus 136 ~~Di~l~f~-t~y~~~~s~~~~~g~~V~d~~~Ia~~Ylks~~~F~~Dlls~ 185 (667)
++++.++-. .|.+- |+ ..|+++ .|=.+|.+-+
T Consensus 1170 V~Em~lKVVALGl~f--------ge---------~aYl~s-sWN~LDgflv 1202 (1956)
T KOG2302|consen 1170 VVEMTLKVVALGLYF--------GE---------QAYLRS-SWNVLDGFLV 1202 (1956)
T ss_pred HHHHHHHHHhhhhcc--------ch---------HHHHHH-HHHhhhHHHH
Confidence 999988754 24332 32 479987 5888886543
No 40
>PLN03223 Polycystin cation channel protein; Provisional
Probab=95.94 E-value=0.2 Score=60.58 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005964 369 LEVMFSICIVLCGLTLFTLLVGNIQVSLQVVM 400 (667)
Q Consensus 369 ~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~ 400 (667)
+-..|..+++++..++.-++|+-|...++...
T Consensus 1395 GPIYFfSFILLV~FILLNMFIAII~DSFsEVK 1426 (1634)
T PLN03223 1395 GMIYFYSYNIFVFMILFNFLLAIICDAFGEVK 1426 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777887888887777776553
No 41
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.028 Score=59.13 Aligned_cols=53 Identities=9% Similarity=0.243 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhccCccccCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005964 344 ILYPIFWGLLNLSSFGNELEPTS--NVLEVMFSICIVLCGLTLFTLLVGNIQVSL 396 (667)
Q Consensus 344 Yl~slYwa~~TlttvGygd~~~~--n~~E~i~~i~i~i~G~~~fa~iig~i~~il 396 (667)
...|+-|++-|=||+|||--..+ -..-++..++=+|+|+++-|+++|.+-+=+
T Consensus 113 f~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKi 167 (400)
T KOG3827|consen 113 FTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKI 167 (400)
T ss_pred hhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44677799999999999954333 334455556667889999999999876544
No 42
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=95.77 E-value=0.086 Score=54.28 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhccCccccCCCch--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNV--------LEVMFSICIVLCGLTLFTLLVGNIQVSLQVV 399 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~--------~E~i~~i~i~i~G~~~fa~iig~i~~il~~~ 399 (667)
.|+.|+|+.+.|+||+|.||..+... .=+.++.+.+++|+.+++-.++.+.--+..+
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~ 250 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTM 250 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48899999999999999999776432 2356777888888888877775554444333
No 43
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.43 E-value=0.033 Score=61.84 Aligned_cols=113 Identities=16% Similarity=0.254 Sum_probs=85.5
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHhccceee-EecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 465 CLDLVKKVPLFHCLDDLVLDNICDRVKAL-IYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 465 ~~~~l~~v~lF~~ls~~~l~~i~~~l~~~-~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
..+++.+.|-|.+++-...+++|..|-.. .=..|.+|+..|+.-+..+.|+.|+|++.. .+|+. ..+.-|+-||.
T Consensus 279 LLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~--PdGk~--e~l~mGnSFG~ 354 (1283)
T KOG3542|consen 279 LLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVK--PDGKR--EELKMGNSFGA 354 (1283)
T ss_pred HHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEec--CCCce--EEeecccccCC
Confidence 35788889999999999999999888754 447899999999999999999999999987 57764 35677889997
Q ss_pred cchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcH
Q 005964 544 ELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 544 ~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p 589 (667)
. +-.+.+-.--.--.-+.+|+..++...|+-.++.+--
T Consensus 355 ~--------PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 355 E--------PTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred C--------CCcchhhhhhhhheecccceEEEeehhhHHHHHHHHH
Confidence 6 1111111000112235689999999999998887654
No 44
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=93.39 E-value=0.016 Score=59.44 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNI 392 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i 392 (667)
+..-|+|||.+.+||+|||-.+|.+...++|+|+-.++|+-+--..+..+
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~ 129 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSI 129 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHH
Confidence 34468899999999999999999989999999999999876654444333
No 45
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=91.55 E-value=0.31 Score=53.21 Aligned_cols=33 Identities=6% Similarity=0.110 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhccCccccCCCchhhHHHHHHH
Q 005964 345 LYPIFWGLLNLSSFGNELEPTSNVLEVMFSICI 377 (667)
Q Consensus 345 l~slYwa~~TlttvGygd~~~~n~~E~i~~i~i 377 (667)
+.|+|+.++|.+||||||..|.-+.-.+..+++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~ 251 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVIL 251 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHH
Confidence 478899999999999999988766665554433
No 46
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=89.22 E-value=0.52 Score=52.78 Aligned_cols=90 Identities=14% Similarity=0.225 Sum_probs=74.0
Q ss_pred HHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccch
Q 005964 467 DLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELL 546 (667)
Q Consensus 467 ~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~L 546 (667)
..|.+...|.++-..-++.++.....+.++...++++.|++++..|++++|.|-+. |. .+-|-..||-.
T Consensus 37 ~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~-----gq----i~mp~~~fgkr-- 105 (1283)
T KOG3542|consen 37 EQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE-----GQ----IYMPYGCFGKR-- 105 (1283)
T ss_pred HHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee-----cc----eecCccccccc--
Confidence 46677788888888899999999999999999999999999999999999998762 33 23455567775
Q ss_pred hhccCCCCCCCCCCcceEEEEeeeceEEeeC
Q 005964 547 SWCLRRPFKDRLPASPATFTCMESVEAYGLN 577 (667)
Q Consensus 547 l~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~ 577 (667)
.+.. |+.+.-.++++|..+++
T Consensus 106 ---------~g~~-r~~nclllq~semivid 126 (1283)
T KOG3542|consen 106 ---------TGQN-RTHNCLLLQESEMIVID 126 (1283)
T ss_pred ---------cccc-cccceeeecccceeeee
Confidence 4555 78888889999998884
No 47
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=89.22 E-value=0.083 Score=57.94 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHhhccCccccCCCchhhH--------HHHHHHHHHHHHHHHHHH
Q 005964 342 DTILYPIFWGLLNLSSFGNELEPTSNVLEV--------MFSICIVLCGLTLFTLLV 389 (667)
Q Consensus 342 ~~Yl~slYwa~~TlttvGygd~~~~n~~E~--------i~~i~i~i~G~~~fa~ii 389 (667)
--|+.|+|++++++||+|+||+.|.+.... .+..+..++|....+.+.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 357899999999999999999999876544 577788888888877777
No 48
>COG4709 Predicted membrane protein [Function unknown]
Probab=83.94 E-value=4.9 Score=38.52 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc---CCCHHHHHhhC--ChhHHHHHHHHHHHHHhhcCCCCCCCCH
Q 005964 409 RSRDMEWWMRRRQLTSGLKWRVRHFERQRWATM---GEDELDWIEDL--PQGLRRDIKRYLCLDLVKKVPLFHCLDD 480 (667)
Q Consensus 409 ~~~~v~~~m~~~~lp~~L~~rV~~y~~~~~~~~---~~de~~il~~L--p~~Lr~~i~~~l~~~~l~~v~lF~~ls~ 480 (667)
-++++++|+ +++|++.++++..+|+..+.+. |.+|+|+..+| |.++-+++....-.+-.+.-|-+.+...
T Consensus 6 fL~eL~~yL--~~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ 80 (195)
T COG4709 6 FLNELEQYL--EGLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRR 80 (195)
T ss_pred HHHHHHHHH--HhCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHH
Confidence 356677777 4799999999998888877766 89999999988 6677778777765555555555555444
No 49
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=82.85 E-value=1.1e+02 Score=36.14 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=57.3
Q ss_pred HHHHHHh--hccCccccCCCc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHH
Q 005964 349 FWGLLNL--SSFGNELEPTSN------VLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARR-KKIQLRSRDMEWWMRR 419 (667)
Q Consensus 349 Ywa~~Tl--ttvGygd~~~~n------~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~-~~~~~~~~~v~~~m~~ 419 (667)
.=++.|+ .|+|+||.+..+ ..-.+|.+++.++.+++.-++|+.|++......... .+++.+...+ --|-.
T Consensus 592 ~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~-iL~lE 670 (782)
T KOG3676|consen 592 STFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAAT-ILMLE 670 (782)
T ss_pred HHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHH-HHHHH
Confidence 3344444 589999877643 245677788888888899999999999888776655 5666554443 34557
Q ss_pred cCCCHHHHHHH
Q 005964 420 RQLTSGLKWRV 430 (667)
Q Consensus 420 ~~lp~~L~~rV 430 (667)
+.+|+.++.+-
T Consensus 671 rs~p~~~r~~~ 681 (782)
T KOG3676|consen 671 RSLPPALRKRF 681 (782)
T ss_pred hcCCHHHHHHH
Confidence 78999888773
No 50
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=76.26 E-value=13 Score=35.87 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc---CCCHHHHHhhC--ChhHHHHHHHHH
Q 005964 409 RSRDMEWWMRRRQLTSGLKWRVRHFERQRWATM---GEDELDWIEDL--PQGLRRDIKRYL 464 (667)
Q Consensus 409 ~~~~v~~~m~~~~lp~~L~~rV~~y~~~~~~~~---~~de~~il~~L--p~~Lr~~i~~~l 464 (667)
=+++++.+++ ++|++-++++.+||+...+.. |.+|++++++| |.++-+++....
T Consensus 6 fL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 6 FLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 3566777886 599999999999999888865 78999999998 666666665443
No 51
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=68.21 E-value=2.6e+02 Score=33.31 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005964 368 VLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMA 401 (667)
Q Consensus 368 ~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~ 401 (667)
.+-.+|.++..+..+++.-.+|+-|+...+....
T Consensus 587 ~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~ 620 (743)
T TIGR00870 587 VGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIAD 620 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 4566777777777777777788777777766544
No 52
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=68.18 E-value=19 Score=28.20 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=32.7
Q ss_pred eEecCCcEEEccCCCcC-eEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 493 LIYSKDEKIIREGNPVS-RMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 493 ~~~~~ge~Ii~~Gd~~~-~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
..+.||+..-..-.... .+++|++|.+.+.. +|+. ..+.+|+.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~~--~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DGER--VELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TTEE--EEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE---ccEE--eEccCCEEEE
Confidence 46778887665555555 99999999999873 4443 4688888763
No 53
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=66.72 E-value=60 Score=41.77 Aligned_cols=43 Identities=19% Similarity=0.451 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhceeEEcCCcccccCCeEeecHHHHHHhhhcCCcchHHHHHhhc
Q 005964 123 IVTVIRTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVIL 186 (667)
Q Consensus 123 ~~~~~~~~~D~if~~Di~l~f~t~y~~~~s~~~~~g~~V~d~~~Ia~~Ylks~~~F~~Dlls~l 186 (667)
.+...+.+.-.+|.+.+++.- ++ .|... |.++. |.++|++...
T Consensus 873 ~L~y~D~~Ft~iFt~Em~lK~----ia-------~Gf~~---------y~rn~-w~~lDf~Vv~ 915 (1592)
T KOG2301|consen 873 ILEYADYIFTYIFTFEMLLKW----IA-------YGFFF---------YFRNA-WNWLDFVVVI 915 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HH-------hHHHH---------HHhhH-HhhhhHHHhh
Confidence 566788888899999999873 22 24321 99994 9999998764
No 54
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=46.36 E-value=1.2e+02 Score=27.35 Aligned_cols=51 Identities=10% Similarity=0.130 Sum_probs=32.7
Q ss_pred eeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEecc
Q 005964 491 KALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDE 544 (667)
Q Consensus 491 ~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~ 544 (667)
....+.||..+-.--....++++|++|.+.+... .+|++ ..+.+||.+---
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i-~~g~~--~~L~aGD~i~~~ 88 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDL-ATGEV--HPIRPGTMYALD 88 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEc-CCCEE--EEeCCCeEEEEC
Confidence 3457788875532211224799999999998621 13554 578999987543
No 55
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=44.94 E-value=84 Score=29.68 Aligned_cols=63 Identities=8% Similarity=0.105 Sum_probs=39.5
Q ss_pred EccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHH
Q 005964 502 IREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASD 580 (667)
Q Consensus 502 i~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~d 580 (667)
....+ .+++|++++|.+.+...+ +|+.....+.+|++|=-- .+.| .+-++.++|.++++.+..
T Consensus 43 ~H~~~-tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~flvP-----------~gvp---HsP~r~~~t~~LvIE~~r 105 (159)
T TIGR03037 43 FHDDP-GEEFFYQLKGEMYLKVTE-EGKREDVPIREGDIFLLP-----------PHVP---HSPQRPAGSIGLVIERKR 105 (159)
T ss_pred cccCC-CceEEEEEcceEEEEEEc-CCcEEEEEECCCCEEEeC-----------CCCC---cccccCCCcEEEEEEeCC
Confidence 44433 789999999999987654 354335689999988432 2222 223334566666666543
No 56
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=44.52 E-value=47 Score=26.85 Aligned_cols=42 Identities=7% Similarity=0.135 Sum_probs=29.1
Q ss_pred cCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 496 SKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 496 ~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
.||..-..-.. +++.+|++|.+.+.. ++|.. ..+.+||.|--
T Consensus 15 ~pg~~~~~~~~--~E~~~vleG~v~it~--~~G~~--~~~~aGD~~~~ 56 (74)
T PF05899_consen 15 TPGKFPWPYPE--DEFFYVLEGEVTITD--EDGET--VTFKAGDAFFL 56 (74)
T ss_dssp ECEEEEEEESS--EEEEEEEEEEEEEEE--TTTEE--EEEETTEEEEE
T ss_pred CCceeEeeCCC--CEEEEEEEeEEEEEE--CCCCE--EEEcCCcEEEE
Confidence 45554333322 788899999999974 57765 57889888743
No 57
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=43.17 E-value=96 Score=23.88 Aligned_cols=46 Identities=15% Similarity=0.227 Sum_probs=23.2
Q ss_pred hHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHH
Q 005964 370 EVMFSI---CIVLCGLTLFTLLVGNIQVSLQVVMARR---KKIQLRSRDMEWWMR 418 (667)
Q Consensus 370 E~i~~i---~i~i~G~~~fa~iig~i~~il~~~~~~~---~~~~~~~~~v~~~m~ 418 (667)
..++.+ .+.+++.+.|+.+ |-.++++.+.++ .+.++|++++-+-+.
T Consensus 5 ~~Iy~~~Vi~l~vl~~~~Ftl~---IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 5 DLIYYILVIILIVLFGASFTLF---IRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 344444 3444444444443 344444433332 357788887766553
No 58
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=42.85 E-value=8.1e+02 Score=31.08 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HH-HHHHHHHHHHHHcCCCHH
Q 005964 373 FSICIVLCGLTLFTLLVGNIQVSLQVVMARRKK-IQ-LRSRDMEWWMRRRQLTSG 425 (667)
Q Consensus 373 ~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~-~~-~~~~~v~~~m~~~~lp~~ 425 (667)
.++++.+.-+++...+|+-++.+..+......+ +. ++.+.+.+|=.+=-+|+.
T Consensus 1019 l~~yLLv~nILL~NLLIA~Fn~tf~~v~~~sd~iWkFQRY~limeyh~rP~LPPP 1073 (1381)
T KOG3614|consen 1019 LVIYLLVTNILLVNLLIAMFSYTFGNVQENSDQIWKFQRYSLIMEYHSRPALPPP 1073 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCC
Confidence 344444455556666666666666655443322 22 455666666555455544
No 59
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=42.45 E-value=7e+02 Score=30.21 Aligned_cols=41 Identities=5% Similarity=-0.016 Sum_probs=28.6
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHH
Q 005964 420 RQLTSGLKWRVRHFERQRWATMGEDELDWIEDLPQGLRRDIKRYL 464 (667)
Q Consensus 420 ~~lp~~L~~rV~~y~~~~~~~~~~de~~il~~Lp~~Lr~~i~~~l 464 (667)
.++|+.|+.++..++....- ....+++.++++...++...+
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~l----~~~~lF~~~s~~~l~~L~~~~ 397 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPVV----EKVYLFKGVSREILLLLVTKM 397 (823)
T ss_pred HHcCHHHHHHHHHHHHHHHH----hhCcchhcCCHHHHHHHHHhh
Confidence 47899999999877654222 233567788888877777665
No 60
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=41.41 E-value=31 Score=31.39 Aligned_cols=75 Identities=13% Similarity=0.030 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005964 340 TADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRR 419 (667)
Q Consensus 340 ~~~~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~ 419 (667)
.......++++.+.+++.-| ++..|.+...+++.++..+.++++.+.--|++++++..- ++...++.+++..+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~q~-~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~-----~~~~~i~sl~dL~~~ 114 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQQG-SSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVP-----KYEPPIDSLEDLANS 114 (148)
T ss_dssp HHHHHHHHHHHCCCCCHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-----HHTSS-SSHHHHHTH
T ss_pred CcccHHHHHHHHHHhhcccc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----CcCCCCCCHHHHHHC
Confidence 34566678887777777633 357777789999999999999999999999999988543 222334555555544
Q ss_pred c
Q 005964 420 R 420 (667)
Q Consensus 420 ~ 420 (667)
.
T Consensus 115 ~ 115 (148)
T PF00060_consen 115 G 115 (148)
T ss_dssp S
T ss_pred C
Confidence 4
No 61
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=40.77 E-value=1.1e+02 Score=33.83 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=17.3
Q ss_pred cHHHHHHhhhcCCcchHHHHHhhc
Q 005964 163 DARAIARHYVISPTKFWLDVFVIL 186 (667)
Q Consensus 163 d~~~Ia~~Ylks~~~F~~Dlls~l 186 (667)
+-++..++|+++ .|-++|++.++
T Consensus 231 ~i~~~g~~y~~~-~WN~~e~~ii~ 253 (425)
T PF08016_consen 231 KIRREGRAYFKS-FWNWLELLIIL 253 (425)
T ss_pred HHHHhhhHHhhh-cCcHHHHHHHH
Confidence 344445789999 49999998776
No 62
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=40.35 E-value=2.6e+02 Score=36.27 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhceeEEcCCcccccCCeEeecHHHHHHhhhcCCcchHHHHHhhcchhh
Q 005964 121 ALIVTVIRTCVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQ 190 (667)
Q Consensus 121 ~~~~~~~~~~~D~if~~Di~l~f~t~y~~~~s~~~~~g~~V~d~~~Ia~~Ylks~~~F~~Dlls~lP~~~ 190 (667)
...+...+.+.-.+|.+++.+.-- ..+ -+.|+++ +|..+|.+-+. +++
T Consensus 472 ~~~l~~~~~vF~~lF~~Em~~ki~--al~------------------~~~yF~~-~~n~fD~~iv~-l~~ 519 (1592)
T KOG2301|consen 472 NYLLYLGNVVFTGLFTVEMILKIY--ALG------------------PRNYFRR-GWNIFDLIIVL-LSL 519 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HcC------------------cHHHHhh-hcchheEEEEe-hhh
Confidence 345566777777788888887542 222 3478877 69999998888 444
No 63
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=39.73 E-value=54 Score=28.73 Aligned_cols=42 Identities=24% Similarity=0.344 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHHHhh----------c-CCCHHHHHhhCChhHHHHHHH
Q 005964 421 QLTSGLKWRVRHFERQRWAT----------M-GEDELDWIEDLPQGLRRDIKR 462 (667)
Q Consensus 421 ~lp~~L~~rV~~y~~~~~~~----------~-~~de~~il~~Lp~~Lr~~i~~ 462 (667)
-||++++..|...+...-.. . ..|...++..||+.||++|..
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~ 104 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLL 104 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhh
Confidence 48999999999888754332 2 456678999999999999864
No 64
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=37.94 E-value=1.1e+02 Score=28.25 Aligned_cols=54 Identities=11% Similarity=0.118 Sum_probs=36.9
Q ss_pred ceeeEecCCcEEEccCC-CcCeEEEEEeeEEEEEEEcCCCeE-EEEEcCCCCeEec
Q 005964 490 VKALIYSKDEKIIREGN-PVSRMVFLVRGRIKRSQSLSKGKL-ATSVLGPGGFLGD 543 (667)
Q Consensus 490 l~~~~~~~ge~Ii~~Gd-~~~~lyfI~~G~v~v~~~~~~g~~-~i~~l~~G~~fGe 543 (667)
+....+.||...-..-- ...++++|++|...+...+.+|.+ ....+.+||.+-.
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~i 87 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVV 87 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEE
Confidence 44466778887654432 256899999999998765544432 3567899987754
No 65
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=36.63 E-value=1.2e+02 Score=27.38 Aligned_cols=49 Identities=12% Similarity=0.199 Sum_probs=35.2
Q ss_pred ccceeeEecCCcEE-EccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeE
Q 005964 488 DRVKALIYSKDEKI-IREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFL 541 (667)
Q Consensus 488 ~~l~~~~~~~ge~I-i~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 541 (667)
...+...+.||+-+ .+.-...++.|+|++|...+.. +|++ ..+.+|+.+
T Consensus 36 ~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~---~~~~--~~v~~gd~~ 85 (127)
T COG0662 36 YSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI---GGEE--VEVKAGDSV 85 (127)
T ss_pred EEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE---CCEE--EEecCCCEE
Confidence 34566778888885 5555557999999999999875 3443 357777765
No 66
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=36.19 E-value=80 Score=30.37 Aligned_cols=61 Identities=10% Similarity=0.101 Sum_probs=39.6
Q ss_pred CCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHH
Q 005964 506 NPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDL 581 (667)
Q Consensus 506 d~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df 581 (667)
+..++++++++|.+.+...+ +|+.....+.+|++|=-- .+.|. +-++.++|..+++.+..-
T Consensus 52 ~~tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP-----------~gvpH---sP~r~~~tv~LviE~~r~ 112 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLP-----------PHVPH---SPQREAGSIGLVIERKRP 112 (177)
T ss_pred CCCceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeC-----------CCCCc---CCccCCCeEEEEEEeCCC
Confidence 56789999999999987754 554234679999988432 23332 223346677777755443
No 67
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=36.07 E-value=1.3e+02 Score=30.24 Aligned_cols=75 Identities=23% Similarity=0.263 Sum_probs=47.5
Q ss_pred cceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCCCCCCC--------C
Q 005964 489 RVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLP--------A 560 (667)
Q Consensus 489 ~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p--------~ 560 (667)
-++...+.+|+..-.+-.......+++.|++.+.. .| +.||++ ..|.|.|.+.| .
T Consensus 30 GF~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~---~g----------~~f~~i----G~R~SvFe~~p~~~vYvp~g 92 (270)
T COG3718 30 GFRLLRLAAGESATEETGDRERCLVLVTGKATVSA---HG----------STFGEI----GTRMSVFERKPPDSVYVPAG 92 (270)
T ss_pred EEEEEEccCCCcccccCCCceEEEEEEeeeEEEee---cc----------chHhhc----ccccccccCCCCCeEEecCC
Confidence 35567778899876666556667777899998753 22 223322 11123334433 2
Q ss_pred cceEEEEeeeceEEeeCHHH
Q 005964 561 SPATFTCMESVEAYGLNASD 580 (667)
Q Consensus 561 ~~~tv~A~~~~~l~~L~~~d 580 (667)
+..+++|.+++++.+-+..-
T Consensus 93 ~~~~vtA~t~~~vAvC~AP~ 112 (270)
T COG3718 93 SAFSVTATTDLEVAVCSAPG 112 (270)
T ss_pred ceEEEEeecceEEEEEeCCC
Confidence 67899999999888876654
No 68
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=34.68 E-value=84 Score=21.42 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCC-----HHHHHHHHHHH
Q 005964 409 RSRDMEWWMRRRQLT-----SGLKWRVRHFE 434 (667)
Q Consensus 409 ~~~~v~~~m~~~~lp-----~~L~~rV~~y~ 434 (667)
+..++.++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 457889999999999 46888888774
No 69
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=34.00 E-value=1.2e+02 Score=33.01 Aligned_cols=52 Identities=8% Similarity=0.036 Sum_probs=37.0
Q ss_pred eeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 492 ALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 492 ~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
...+.||...-----...++.++++|.+++...+.+|+.....+.+||.+--
T Consensus 71 ~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~f 122 (367)
T TIGR03404 71 NMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYF 122 (367)
T ss_pred EEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEE
Confidence 3556777754321123468999999999998877677765567999998743
No 70
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=33.60 E-value=2.2e+02 Score=27.82 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=27.3
Q ss_pred CCHHHHHHHhccceeeE--ecCCcEEEccCCCcC
Q 005964 478 LDDLVLDNICDRVKALI--YSKDEKIIREGNPVS 509 (667)
Q Consensus 478 ls~~~l~~i~~~l~~~~--~~~ge~Ii~~Gd~~~ 509 (667)
.++....+......+.. +.+|+.|+++||..+
T Consensus 174 ~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 174 ATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred HHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 46667788888889888 999999999999875
No 71
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=33.57 E-value=2e+02 Score=34.10 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=33.6
Q ss_pred hhCChhHHHHHHHHHHHHHhh-----cCCCCCCCCHHHHHHHhccce
Q 005964 450 EDLPQGLRRDIKRYLCLDLVK-----KVPLFHCLDDLVLDNICDRVK 491 (667)
Q Consensus 450 ~~Lp~~Lr~~i~~~l~~~~l~-----~v~lF~~ls~~~l~~i~~~l~ 491 (667)
+.||++||+.+..+...+... .-.++++++++..++|+.++-
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~ 417 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLC 417 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHh
Confidence 689999999999998877654 334778888888888887764
No 72
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=33.09 E-value=2.2e+02 Score=30.92 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHHHHhhccCcccc--CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 005964 340 TADTILYPIFWGLLNLSSFGNELE--PTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMAR 402 (667)
Q Consensus 340 ~~~~Yl~slYwa~~TlttvGygd~--~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~ 402 (667)
..--|+-++-+++..+.+++-++. .|. .. ..+++++.+++++.+-+.|..++..++--+.-
T Consensus 97 vLg~Figtfvy~l~~l~~i~~~~~~~~p~-~~-~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii 159 (371)
T PF10011_consen 97 VLGTFIGTFVYSLLVLIAIRSGDYGSVPR-LS-VFIALALAILSVVLLIYFIHHIARSIQVSNII 159 (371)
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCcc-hH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 345688888888888888886543 222 34 88888999999999999999998887655443
No 73
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=33.08 E-value=2e+02 Score=28.03 Aligned_cols=52 Identities=8% Similarity=0.008 Sum_probs=34.6
Q ss_pred eeeEecCCcEE---------EccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 491 KALIYSKDEKI---------IREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 491 ~~~~~~~ge~I---------i~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
-...+.||... +.......++|+|++|...+...+.+|......+.+|+.+-
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~ 131 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVY 131 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEE
Confidence 34566777743 23333345999999999998765566653356788888764
No 74
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=32.77 E-value=43 Score=36.58 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=36.5
Q ss_pred CCCeEeccchhhccCCCCCCCCCCcceEEEEeee-ceEEeeCHHHHHHHHHHcH
Q 005964 537 PGGFLGDELLSWCLRRPFKDRLPASPATFTCMES-VEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 537 ~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~-~~l~~L~~~df~~l~~~~p 589 (667)
+||-||..++ ....| +.+++..-++ |..++.++.+|.+++++--
T Consensus 1 eGddfgklal--------vnd~p-raativl~ed~~~fl~vDk~~Fn~I~~~vE 45 (573)
T KOG2378|consen 1 EGDDFGKLAL--------VNDAP-RAATIVLREDNCHFLRVDKHDFNRILHDVE 45 (573)
T ss_pred CCcccchhcc--------ccccc-cccceeeecCCCcceeecHHHHHHHHHhhh
Confidence 5888999866 47778 7788777775 9999999999999998754
No 75
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=29.31 E-value=8.6e+02 Score=27.36 Aligned_cols=125 Identities=14% Similarity=0.243 Sum_probs=70.2
Q ss_pred hhhHHHHHHHHHHH-----------------HHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 005964 368 VLEVMFSICIVLCG-----------------LTLFTLLVGN--IQVSLQVVMARRKKIQLRSRDMEWWMRRRQLTSGLKW 428 (667)
Q Consensus 368 ~~E~i~~i~i~i~G-----------------~~~fa~iig~--i~~il~~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~~ 428 (667)
.-|+++++-+..+- ..++-+++|. ++.|+.+..+--..+.....+.++-| +
T Consensus 181 ~ReY~~S~YWStLTlTTiGe~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~m----------D 250 (536)
T KOG0500|consen 181 TREYLYSLYWSTLTLTTIGEQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKM----------D 250 (536)
T ss_pred HHHHHHHHHHHhhhhhhccCCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHH----------H
Confidence 46777776655443 2345566665 34566666555555555555444433 4
Q ss_pred HHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHHH-----HHhhcCCCCCCCCHHHHHHHhccceeeEecC------
Q 005964 429 RVRHFERQRWATMGEDELDWIEDLPQGLRRDIKRYLCL-----DLVKKVPLFHCLDDLVLDNICDRVKALIYSK------ 497 (667)
Q Consensus 429 rV~~y~~~~~~~~~~de~~il~~Lp~~Lr~~i~~~l~~-----~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~------ 497 (667)
-++.|.+| +.+|..|+..+.+..-- +....-...+.+++....+|+..+...+.++
T Consensus 251 GiK~YM~~-------------RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ 317 (536)
T KOG0500|consen 251 GIKQYMRY-------------RKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQD 317 (536)
T ss_pred HHHHHHHH-------------hcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHh
Confidence 56777776 57888888776554311 1222223444566666666666554433222
Q ss_pred -------------CcEEEccCCCcCeEEEEEeeEEE
Q 005964 498 -------------DEKIIREGNPVSRMVFLVRGRIK 520 (667)
Q Consensus 498 -------------ge~Ii~~Gd~~~~lyfI~~G~v~ 520 (667)
...++..|| |+..||.+.
T Consensus 318 ce~~lL~elVLklk~qvfSPgD-----yICrKGdvg 348 (536)
T KOG0500|consen 318 CEAGLLVELVLKLKPQVFSPGD-----YICRKGDVG 348 (536)
T ss_pred cchhHHHHHHHHhcceeeCCCC-----eEEecCccc
Confidence 234555555 788888764
No 76
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=28.93 E-value=1.3e+02 Score=25.08 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=43.6
Q ss_pred cceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEe
Q 005964 489 RVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCM 568 (667)
Q Consensus 489 ~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~ 568 (667)
......+.||..+-.-.-.+.+..||++|.+.. .+| .+.+|++.=.- |.+..+..+.
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d----~~~-----~~~~G~~~~~p--------------~g~~h~~~s~ 81 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD----GDG-----RYGAGDWLRLP--------------PGSSHTPRSD 81 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE----TTC-----EEETTEEEEE---------------TTEEEEEEES
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE----CCc-----cCCCCeEEEeC--------------CCCccccCcC
Confidence 455678889988887777778888999999872 333 24788876443 2255677777
Q ss_pred eeceEEe
Q 005964 569 ESVEAYG 575 (667)
Q Consensus 569 ~~~~l~~ 575 (667)
+.|.++.
T Consensus 82 ~gc~~~v 88 (91)
T PF12973_consen 82 EGCLILV 88 (91)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 7888775
No 77
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=27.18 E-value=1.5e+02 Score=26.79 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCHHHHHhhCCh
Q 005964 410 SRDMEWWMRRRQLTSGLKWRVRHFERQRWATMGEDELDWIEDLPQ 454 (667)
Q Consensus 410 ~~~v~~~m~~~~lp~~L~~rV~~y~~~~~~~~~~de~~il~~Lp~ 454 (667)
...++.+-.++-+=+-|+.+--+++-..|.++-..|.+|+++.|.
T Consensus 62 r~kiEd~~a~nai~PiL~AErDr~~l~~lrkn~eeEaeiMKdVPg 106 (146)
T KOG3300|consen 62 RLKIEDYAARNAILPILQAERDRRFLSELRKNLEEEAEIMKDVPG 106 (146)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHccCCC
Confidence 344566666667777777666666655566554456778888774
No 78
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=27.12 E-value=1.8e+02 Score=31.54 Aligned_cols=53 Identities=8% Similarity=-0.016 Sum_probs=37.1
Q ss_pred ceeeEecCCcEEEc-cCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 490 VKALIYSKDEKIIR-EGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 490 l~~~~~~~ge~Ii~-~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
+....+.||...-. --...+++++|++|.+++...+.+|+.....+.+||.+-
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~ 300 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGY 300 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEE
Confidence 45566778876532 223467999999999999876666654456789998763
No 79
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=25.72 E-value=1.7e+02 Score=26.20 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=38.6
Q ss_pred ceeeEecCCcEEEccCCC-cCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEecc
Q 005964 490 VKALIYSKDEKIIREGNP-VSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDE 544 (667)
Q Consensus 490 l~~~~~~~ge~Ii~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~ 544 (667)
.....+.||..+-.---+ .....+|++|.+++.. +|.. ..+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~---~g~~--~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL---EGEK--KELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEe---cCCc--eEecCCCEEEEC
Confidence 345788899988777666 7789999999999875 3443 468999998765
No 80
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=25.56 E-value=95 Score=18.31 Aligned_cols=17 Identities=53% Similarity=0.722 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q 005964 612 AAVNIQFAWRRYRIRIR 628 (667)
Q Consensus 612 ~~~~~q~~~~~~~~r~~ 628 (667)
+++.+|..|+.+..|..
T Consensus 3 aai~iQ~~~R~~~~Rk~ 19 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKR 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 57889999999988753
No 81
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=25.41 E-value=50 Score=25.44 Aligned_cols=18 Identities=17% Similarity=0.477 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhccCc
Q 005964 343 TILYPIFWGLLNLSSFGN 360 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGy 360 (667)
||+.+++|++.-.--+||
T Consensus 2 kyivt~fWs~il~~vvgy 19 (57)
T PF11151_consen 2 KYIVTFFWSFILGEVVGY 19 (57)
T ss_pred cEEehhHHHHHHHHHHHH
Confidence 688999999998888888
No 82
>smart00814 Alpha_TIF Alpha trans-inducing protein (Alpha-TIF). Alpha-TIF (VP16) from Herpes Simplex virus is an essential tegument protein involved in the transcriptional activation of viral immediate early (IE) promoters (alpha genes) during the lytic phase of viral infection. VP16 associates with cellular transcription factors to enhance transcription rates, including the general transcription factor TFIIB and the transcriptional coactivator PC4. The N-terminal residues of VP16 confer specificity for the IE genes, while the C-terminal residues are responsible for transcriptional activation. Within the C-terminal region are two activation regions that can independently and cooperatively activate transcription. VP16 forms a transcriptional regulatory complex with two cellular proteins, the POU-domain transcription factor Oct-1 and the cell-proliferation factor HCF-1. VP16 is an alpha/beta protein with an unusual fold. Other transcription factors may have a similar topology.
Probab=25.36 E-value=6.8e+02 Score=26.65 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=71.4
Q ss_pred HHHHhHHHHHHHHHHH----HHHHHHHHH-----------cCCCHHHHHHHHHHHHHHHhhc-CCCHHHHHhhCChhHHH
Q 005964 395 SLQVVMARRKKIQLRS----RDMEWWMRR-----------RQLTSGLKWRVRHFERQRWATM-GEDELDWIEDLPQGLRR 458 (667)
Q Consensus 395 il~~~~~~~~~~~~~~----~~v~~~m~~-----------~~lp~~L~~rV~~y~~~~~~~~-~~de~~il~~Lp~~Lr~ 458 (667)
++..+-++.+.|..-+ ..+-.|++. .+-+.++++|.+....-.+-+. ..--.-++-.|=-..-+
T Consensus 130 F~sELrAREe~Y~~Ll~~YCrAL~~YLr~~a~~~~rg~r~~~~~~~~~~~~r~~i~~rYYRE~ArlArlLylHLYlsvtR 209 (356)
T smart00814 130 FLSELRAREESYAKLLAGYCRALLRYLRASARRLSRGARALGRDRDLQERLRQLIAERYYREAARLARLLYLHLYLSVTR 209 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554432 445555544 5566777788877776555443 11111133344555677
Q ss_pred HHHHHHHHHHhhcCCCCCCC--CHHHHHHHhccceeeEecCCcEEEccCCCc
Q 005964 459 DIKRYLCLDLVKKVPLFHCL--DDLVLDNICDRVKALIYSKDEKIIREGNPV 508 (667)
Q Consensus 459 ~i~~~l~~~~l~~v~lF~~l--s~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~ 508 (667)
|+...++.+....-.+|..+ +=...+++.-.+++..|..|-+++ +|++-
T Consensus 210 evswrl~A~Q~~~q~vF~~L~y~W~q~RQf~ClFqPvlfnhGvV~l-eg~pL 260 (356)
T smart00814 210 EVSWRLHAQQVMRQDVFVSLRYDWEQRRQFTCLFQPVLFNHGVVIL-EGRPL 260 (356)
T ss_pred HHHHHHHHHHhhccchhheeeeehhhcceeeeeccceeeeCceeEe-CCCCC
Confidence 88888888888888888776 556778888999999999987665 44443
No 83
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=24.53 E-value=2.3e+02 Score=26.25 Aligned_cols=45 Identities=20% Similarity=0.363 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHH
Q 005964 375 ICIVLCGLTLFTLLVGNIQVSLQVV-------------MARRKKIQLRSRDMEWWMRR 419 (667)
Q Consensus 375 i~i~i~G~~~fa~iig~i~~il~~~-------------~~~~~~~~~~~~~v~~~m~~ 419 (667)
+++.++|+.++|++++-+.+.-... .-...+|+.+++...+.++.
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k~ 67 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYKQ 67 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHHH
Confidence 6778999999999998764432111 12467888888888866664
No 84
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=23.93 E-value=5.8e+02 Score=23.58 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 005964 250 FCINLIAYLIFSHVAGGCWYALA 272 (667)
Q Consensus 250 ~~~~l~~~ll~~H~~aC~wy~i~ 272 (667)
.+..+..+++..+++++..+.-.
T Consensus 100 ~~~~~~~~~~~~a~~~~~lf~~~ 122 (200)
T PF00520_consen 100 FILLLFIVLLFFACIGYQLFGGS 122 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccccccccccchhheecccc
Confidence 34444444554555555555444
No 85
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=22.94 E-value=3.1e+02 Score=20.07 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 005964 372 MFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDM 413 (667)
Q Consensus 372 i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v 413 (667)
.++.+..+..++....+...++++-..+...-++++..-+++
T Consensus 8 ~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~ 49 (53)
T PF01484_consen 8 VVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDA 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555556666777777766666666666665553
No 86
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=22.44 E-value=1.1e+02 Score=34.69 Aligned_cols=71 Identities=10% Similarity=0.102 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCC
Q 005964 346 YPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRRQL 422 (667)
Q Consensus 346 ~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~~l 422 (667)
.|+||++....--|. |+.|.+...++..-++-++-+++.+---+|+++++.- +++..-++.+++..|+.+|
T Consensus 598 NsLWFsLgAFMQQG~-DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLTv-----ErMvsPIESaEDLAkQteI 668 (897)
T KOG1054|consen 598 NSLWFSLGAFMQQGC-DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV-----ERMVSPIESAEDLAKQTEI 668 (897)
T ss_pred HHHHHHHHHHHhcCC-CCCccccccceeccchhhhhhhhhhhhhhHHHHHHhH-----HhhcCcchhHHHHhhccee
Confidence 799999999999998 7777778899988888777776666666677666532 3344444555555555444
No 87
>PHA03029 hypothetical protein; Provisional
Probab=22.27 E-value=4.3e+02 Score=21.42 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005964 368 VLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQ 407 (667)
Q Consensus 368 ~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~ 407 (667)
..|..|-++..++=.++.--+||-+-..+-+.+..+....
T Consensus 3 d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~raai~ 42 (92)
T PHA03029 3 DAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRAAID 42 (92)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888777777777777877777766665544433
No 88
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=22.17 E-value=2.4e+02 Score=25.80 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=37.5
Q ss_pred cceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCC-----eEEEE--EcCCCCeEec
Q 005964 489 RVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKG-----KLATS--VLGPGGFLGD 543 (667)
Q Consensus 489 ~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g-----~~~i~--~l~~G~~fGe 543 (667)
.+......||....--=..+.++.+|.+|..++.....++ +.... .+.+||.|--
T Consensus 35 ~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~v 96 (144)
T PF00190_consen 35 AVRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVV 96 (144)
T ss_dssp EEEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE
T ss_pred EEEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceee
Confidence 3444555788776544447889999999999976665554 12223 4999999854
No 89
>PRK06771 hypothetical protein; Provisional
Probab=22.16 E-value=4.8e+02 Score=22.30 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 005964 385 FTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMR 418 (667)
Q Consensus 385 fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~ 418 (667)
+.|+.-.++.+...++.+....+.+++.+.+.+-
T Consensus 14 ~i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~G 47 (93)
T PRK06771 14 FIYIVEKLTKIEKKTDARLKRMEDRLQLITKEMG 47 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445566666666666666666666666555543
No 90
>PRK11171 hypothetical protein; Provisional
Probab=21.63 E-value=3e+02 Score=28.27 Aligned_cols=72 Identities=14% Similarity=0.074 Sum_probs=0.0
Q ss_pred ceeeEecCCcEEEccCCC--cCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEE
Q 005964 490 VKALIYSKDEKIIREGNP--VSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTC 567 (667)
Q Consensus 490 l~~~~~~~ge~Ii~~Gd~--~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A 567 (667)
+....+.||...-..... .+++++|++|.+.+.. +|++ ..+.+||.+=-- .+.+ ....-..
T Consensus 63 ~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~---~g~~--~~L~~GDsi~~p-----------~~~~-H~~~N~g 125 (266)
T PRK11171 63 QYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL---EGKT--HALSEGGYAYLP-----------PGSD-WTLRNAG 125 (266)
T ss_pred EEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE---CCEE--EEECCCCEEEEC-----------CCCC-EEEEECC
Q ss_pred eeeceEEeeCH
Q 005964 568 MESVEAYGLNA 578 (667)
Q Consensus 568 ~~~~~l~~L~~ 578 (667)
-+.++++.+.+
T Consensus 126 ~~~a~~l~v~~ 136 (266)
T PRK11171 126 AEDARFHWIRK 136 (266)
T ss_pred CCCEEEEEEEc
No 91
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=20.57 E-value=1.2e+02 Score=24.86 Aligned_cols=39 Identities=18% Similarity=0.404 Sum_probs=29.3
Q ss_pred HHHHhhCChhHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhcccee
Q 005964 446 LDWIEDLPQGLRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKA 492 (667)
Q Consensus 446 ~~il~~Lp~~Lr~~i~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~ 492 (667)
.+++..||+.+|.++...+ --+...+++.+..|...++.
T Consensus 30 A~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~ 68 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEE 68 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHH
Confidence 4688999999988887666 45667889888888777654
No 92
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.57 E-value=1.1e+03 Score=29.07 Aligned_cols=10 Identities=20% Similarity=0.846 Sum_probs=6.9
Q ss_pred hhccCCCCCC
Q 005964 283 QCENSKSCDF 292 (667)
Q Consensus 283 ~c~~~~~c~~ 292 (667)
.|.+.++|+.
T Consensus 1599 ec~e~npceg 1608 (1956)
T KOG2302|consen 1599 ECNEENPCEG 1608 (1956)
T ss_pred ccCCCCCccc
Confidence 4777777764
Done!