Query 005964
Match_columns 667
No_of_seqs 335 out of 3387
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 12:18:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 6.4E-33 2.2E-37 297.3 13.5 340 68-598 3-343 (355)
2 2ptm_A Hyperpolarization-activ 100.0 6.9E-30 2.4E-34 250.4 22.1 188 398-598 2-189 (198)
3 3ukn_A Novel protein similar t 100.0 1.2E-30 4E-35 258.7 16.0 198 393-605 1-201 (212)
4 3bpz_A Potassium/sodium hyperp 100.0 1.8E-29 6E-34 248.4 20.3 186 397-596 2-187 (202)
5 1orq_C Potassium channel; volt 99.8 2.6E-20 8.8E-25 186.0 16.0 212 76-398 8-220 (223)
6 4f8a_A Potassium voltage-gated 99.8 1.4E-18 4.7E-23 163.0 16.7 141 445-599 5-147 (160)
7 2r9r_B Paddle chimera voltage 99.8 2.1E-18 7.1E-23 192.2 16.3 301 66-464 171-488 (514)
8 3gyd_A CNMP-BD protein, cyclic 99.7 5.9E-17 2E-21 156.9 17.8 154 445-608 13-171 (187)
9 3dn7_A Cyclic nucleotide bindi 99.7 3.3E-17 1.1E-21 159.0 12.8 126 466-600 6-132 (194)
10 3mdp_A Cyclic nucleotide-bindi 99.7 5E-17 1.7E-21 149.0 12.6 130 467-606 6-139 (142)
11 3ocp_A PRKG1 protein; serine/t 99.7 4.6E-17 1.6E-21 149.3 11.5 126 451-589 7-132 (139)
12 2pqq_A Putative transcriptiona 99.7 1.5E-16 5.1E-21 146.9 14.2 121 466-596 4-125 (149)
13 4ev0_A Transcription regulator 99.7 1.5E-15 5E-20 149.8 17.9 126 469-604 1-127 (216)
14 3idb_B CAMP-dependent protein 99.7 1.4E-16 4.6E-21 150.0 9.9 123 457-589 28-151 (161)
15 2z69_A DNR protein; beta barre 99.7 7E-16 2.4E-20 143.3 14.0 126 466-600 11-137 (154)
16 3d0s_A Transcriptional regulat 99.6 1.3E-15 4.4E-20 151.6 14.1 128 466-603 5-133 (227)
17 3e97_A Transcriptional regulat 99.6 3.1E-15 1.1E-19 149.2 16.9 128 466-603 5-133 (231)
18 3fx3_A Cyclic nucleotide-bindi 99.6 8.3E-16 2.8E-20 154.0 12.6 129 465-603 9-138 (237)
19 3dv8_A Transcriptional regulat 99.6 4.3E-15 1.5E-19 146.8 16.9 127 467-603 3-132 (220)
20 1zyb_A Transcription regulator 99.6 1.8E-15 6E-20 151.5 13.2 128 466-602 17-147 (232)
21 3iwz_A CAP-like, catabolite ac 99.6 8.2E-15 2.8E-19 145.8 17.5 127 466-602 10-143 (230)
22 3dkw_A DNR protein; CRP-FNR, H 99.6 2.9E-15 9.8E-20 148.8 13.1 131 466-605 8-139 (227)
23 3shr_A CGMP-dependent protein 99.6 6.7E-15 2.3E-19 152.9 15.5 133 447-593 19-151 (299)
24 1vp6_A CNBD, cyclic-nucleotide 99.6 4.3E-15 1.5E-19 135.5 11.8 119 466-600 10-128 (138)
25 4ava_A Lysine acetyltransferas 99.6 6.4E-15 2.2E-19 155.6 14.5 124 466-600 12-135 (333)
26 3pna_A CAMP-dependent protein 99.6 6.6E-15 2.3E-19 137.4 12.5 114 463-589 34-147 (154)
27 3ryp_A Catabolite gene activat 99.6 3.9E-14 1.3E-18 138.8 17.0 120 473-602 2-123 (210)
28 1wgp_A Probable cyclic nucleot 99.6 7E-16 2.4E-20 140.7 3.7 117 467-589 6-130 (137)
29 2gau_A Transcriptional regulat 99.6 9.2E-15 3.1E-19 145.9 12.1 124 471-604 14-138 (232)
30 2d93_A RAP guanine nucleotide 99.6 2.7E-15 9.1E-20 136.6 6.9 124 453-589 2-127 (134)
31 2oz6_A Virulence factor regula 99.5 1.1E-13 3.8E-18 135.2 17.8 117 478-604 1-122 (207)
32 2a9h_A Voltage-gated potassium 99.5 2.4E-14 8.4E-19 133.4 10.2 64 342-405 83-146 (155)
33 2qcs_B CAMP-dependent protein 99.5 1.4E-13 4.8E-18 142.1 16.9 127 463-599 153-281 (291)
34 3shr_A CGMP-dependent protein 99.5 4.8E-14 1.7E-18 146.4 13.1 128 463-600 153-282 (299)
35 3kcc_A Catabolite gene activat 99.5 2.2E-13 7.6E-18 138.7 16.6 117 476-602 55-173 (260)
36 1o5l_A Transcriptional regulat 99.5 8E-14 2.7E-18 137.4 12.7 121 472-602 4-126 (213)
37 2fmy_A COOA, carbon monoxide o 99.5 1.1E-13 3.7E-18 137.0 13.5 120 467-604 4-124 (220)
38 1ft9_A Carbon monoxide oxidati 99.5 1.3E-13 4.5E-18 136.6 12.6 120 468-605 1-121 (222)
39 4din_B CAMP-dependent protein 99.5 9.4E-14 3.2E-18 149.7 11.7 128 463-600 244-373 (381)
40 2qcs_B CAMP-dependent protein 99.5 3.3E-13 1.1E-17 139.3 15.1 125 461-599 33-157 (291)
41 3of1_A CAMP-dependent protein 99.5 1.1E-13 3.9E-18 138.7 11.3 115 463-589 121-235 (246)
42 3vou_A ION transport 2 domain 99.5 1.2E-12 4.1E-17 121.5 17.2 87 343-429 52-148 (148)
43 4h33_A LMO2059 protein; bilaye 99.5 5.7E-14 1.9E-18 128.5 8.0 93 343-435 43-135 (137)
44 3of1_A CAMP-dependent protein 99.5 1E-13 3.5E-18 139.1 10.0 115 466-594 6-120 (246)
45 3tnp_B CAMP-dependent protein 99.5 2.1E-13 7.2E-18 148.6 13.2 122 458-589 136-258 (416)
46 4din_B CAMP-dependent protein 99.4 5.3E-13 1.8E-17 143.8 13.9 122 461-596 124-245 (381)
47 1o7f_A CAMP-dependent RAP1 gua 99.4 5.1E-13 1.8E-17 147.7 13.9 129 451-589 26-157 (469)
48 3e6c_C CPRK, cyclic nucleotide 99.4 1.1E-12 3.8E-17 132.5 14.9 121 470-603 12-133 (250)
49 3tnp_B CAMP-dependent protein 99.4 4.4E-13 1.5E-17 146.1 10.8 115 466-589 266-387 (416)
50 2ih3_C Voltage-gated potassium 99.4 1.2E-12 4.2E-17 117.2 11.8 59 343-401 61-119 (122)
51 2bgc_A PRFA; bacterial infecti 99.4 5.9E-12 2E-16 126.2 16.9 116 477-602 3-123 (238)
52 3la7_A Global nitrogen regulat 99.4 4.3E-12 1.5E-16 127.7 15.0 114 480-602 30-148 (243)
53 1o7f_A CAMP-dependent RAP1 gua 99.4 1.7E-12 6E-17 143.4 12.4 118 463-593 333-452 (469)
54 3eff_K Voltage-gated potassium 99.3 1.1E-11 3.6E-16 113.9 12.7 89 343-432 40-129 (139)
55 4f7z_A RAP guanine nucleotide 99.3 1.8E-11 6.3E-16 147.8 13.9 132 448-590 24-158 (999)
56 3cf6_E RAP guanine nucleotide 99.3 1.1E-11 3.9E-16 142.8 11.2 131 446-589 12-144 (694)
57 3b02_A Transcriptional regulat 99.2 8.4E-11 2.9E-15 113.9 11.4 93 493-602 2-95 (195)
58 4f7z_A RAP guanine nucleotide 99.2 9.5E-11 3.3E-15 141.5 14.5 113 464-588 334-448 (999)
59 2q67_A Potassium channel prote 99.1 6.9E-10 2.4E-14 97.9 12.3 59 343-401 49-107 (114)
60 2zcw_A TTHA1359, transcription 99.1 2.5E-10 8.6E-15 111.1 9.6 98 487-602 2-102 (202)
61 2k1e_A Water soluble analogue 99.1 4.8E-11 1.6E-15 103.5 3.2 59 343-401 40-98 (103)
62 3rvy_A ION transport protein; 99.0 4.5E-10 1.5E-14 115.9 9.6 59 342-400 179-243 (285)
63 3ouf_A Potassium channel prote 99.0 1.3E-09 4.5E-14 93.2 10.8 57 343-399 32-88 (97)
64 3ldc_A Calcium-gated potassium 98.9 5.7E-09 1.9E-13 86.3 10.8 53 344-396 29-81 (82)
65 3pjs_K KCSA, voltage-gated pot 98.8 1.9E-10 6.5E-15 108.7 -1.2 64 343-406 67-130 (166)
66 1xl4_A Inward rectifier potass 98.7 5.6E-08 1.9E-12 100.3 10.3 54 343-396 82-135 (301)
67 1p7b_A Integral membrane chann 98.6 5.7E-08 2E-12 101.3 7.6 57 343-399 96-152 (333)
68 3um7_A Potassium channel subfa 98.6 1.3E-07 4.5E-12 97.2 10.0 57 343-399 115-171 (309)
69 2qks_A KIR3.1-prokaryotic KIR 98.5 6.1E-07 2.1E-11 93.2 12.6 56 343-398 78-133 (321)
70 4gx0_A TRKA domain protein; me 98.4 1.8E-06 6.3E-11 97.5 13.1 53 344-396 52-105 (565)
71 3sya_A G protein-activated inw 98.4 2.6E-06 8.9E-11 88.6 13.1 55 344-398 92-148 (340)
72 3um7_A Potassium channel subfa 98.2 4.3E-07 1.5E-11 93.4 3.7 59 343-401 224-288 (309)
73 3ukm_A Potassium channel subfa 98.2 2.3E-06 8E-11 86.6 8.1 55 343-397 93-147 (280)
74 3ukm_A Potassium channel subfa 98.1 2.1E-06 7.1E-11 87.0 5.8 55 344-398 202-263 (280)
75 3spc_A Inward-rectifier K+ cha 98.1 1.9E-05 6.6E-10 82.2 12.1 55 343-397 94-150 (343)
76 4dxw_A Navrh, ION transport pr 98.0 0.00011 3.8E-09 72.7 15.5 77 76-188 12-88 (229)
77 1lnq_A MTHK channels, potassiu 97.9 8E-07 2.7E-11 93.6 -2.2 55 345-399 47-101 (336)
78 2kyh_A KVAP, voltage-gated pot 96.6 0.0056 1.9E-07 55.9 8.5 78 77-191 22-99 (147)
79 1ors_C Potassium channel; volt 96.1 0.013 4.6E-07 52.3 7.9 78 76-190 6-83 (132)
80 2kxw_B Sodium channel protein 72.0 3.5 0.00012 25.7 3.0 21 607-627 3-23 (27)
81 2l53_B CAM, voltage-gated sodi 71.6 3.5 0.00012 26.5 3.0 22 607-628 3-24 (31)
82 2ozj_A Cupin 2, conserved barr 63.0 48 0.0016 27.4 9.7 65 493-576 43-107 (114)
83 3fjs_A Uncharacterized protein 62.6 40 0.0014 28.2 9.2 66 490-574 38-103 (114)
84 3rns_A Cupin 2 conserved barre 61.0 33 0.0011 32.8 9.3 69 489-576 38-106 (227)
85 3kg2_A Glutamate receptor 2; I 59.5 12 0.00042 43.1 6.9 55 343-398 563-617 (823)
86 1yhf_A Hypothetical protein SP 50.5 86 0.0029 25.6 9.2 48 491-543 43-90 (115)
87 3lwc_A Uncharacterized protein 48.0 1.2E+02 0.004 25.6 9.7 46 492-543 44-89 (119)
88 2pfw_A Cupin 2, conserved barr 46.2 1.1E+02 0.0038 25.0 9.2 67 491-576 37-103 (116)
89 1dgw_A Canavalin; duplicated s 44.7 30 0.001 31.8 5.7 52 490-542 43-94 (178)
90 4e2g_A Cupin 2 conserved barre 36.3 90 0.0031 26.0 7.2 49 490-543 43-91 (126)
91 2gu9_A Tetracenomycin polyketi 36.3 83 0.0028 25.4 6.8 48 490-542 23-73 (113)
92 1j58_A YVRK protein; cupin, de 35.0 64 0.0022 33.4 7.1 54 490-543 81-134 (385)
93 2vqa_A SLL1358 protein, MNCA; 34.7 69 0.0023 32.7 7.2 52 491-542 55-107 (361)
94 1v70_A Probable antibiotics sy 34.2 97 0.0033 24.4 6.7 47 491-542 31-78 (105)
95 1yfu_A 3-hydroxyanthranilate-3 31.7 72 0.0024 29.3 5.7 36 507-543 54-89 (174)
96 3ibm_A Cupin 2, conserved barr 30.8 1.6E+02 0.0055 26.4 8.2 48 491-543 59-106 (167)
97 3rns_A Cupin 2 conserved barre 30.3 1.6E+02 0.0054 27.9 8.5 50 489-543 154-203 (227)
98 1o5u_A Novel thermotoga mariti 30.3 1.8E+02 0.0062 23.6 7.8 47 491-543 34-80 (101)
99 3h8u_A Uncharacterized conserv 29.7 1.2E+02 0.004 25.2 6.8 49 490-542 41-90 (125)
100 3d0j_A Uncharacterized protein 29.2 85 0.0029 27.7 5.6 64 502-579 44-110 (140)
101 2vqa_A SLL1358 protein, MNCA; 29.1 1.1E+02 0.0037 31.2 7.5 54 490-543 236-290 (361)
102 2i45_A Hypothetical protein; n 28.4 75 0.0026 25.8 5.1 68 495-580 35-102 (107)
103 1fi2_A Oxalate oxidase, germin 27.3 1.3E+02 0.0046 27.8 7.2 54 490-543 74-131 (201)
104 1zvf_A 3-hydroxyanthranilate 3 27.3 3.6E+02 0.012 24.6 10.8 62 481-543 12-92 (176)
105 1j58_A YVRK protein; cupin, de 26.8 1.1E+02 0.0037 31.5 7.1 54 490-543 259-313 (385)
106 3bcw_A Uncharacterized protein 26.5 61 0.0021 27.8 4.2 47 493-544 54-100 (123)
107 4i4a_A Similar to unknown prot 25.7 2.8E+02 0.0096 22.8 9.0 79 492-589 38-120 (128)
108 2d5f_A Glycinin A3B4 subunit; 25.3 1.6E+02 0.0054 31.8 8.1 61 483-543 362-424 (493)
109 2qnk_A 3-hydroxyanthranilate 3 24.8 2.2E+02 0.0076 28.1 8.3 61 505-580 48-108 (286)
110 3kgz_A Cupin 2 conserved barre 24.5 1E+02 0.0036 27.4 5.6 46 492-542 48-93 (156)
111 3jzv_A Uncharacterized protein 24.5 1E+02 0.0035 27.8 5.6 46 492-542 57-102 (166)
112 2cav_A Protein (canavalin); vi 24.3 84 0.0029 33.5 5.7 54 488-542 86-139 (445)
113 1uij_A Beta subunit of beta co 24.3 93 0.0032 32.8 6.0 54 488-542 49-102 (416)
114 3es1_A Cupin 2, conserved barr 24.2 80 0.0028 28.9 4.8 48 490-541 81-128 (172)
115 3d82_A Cupin 2, conserved barr 24.1 1.8E+02 0.006 22.8 6.6 51 508-577 50-100 (102)
116 1sfn_A Conserved hypothetical 24.1 2.6E+02 0.0088 26.7 8.8 45 492-543 54-98 (246)
117 2fqp_A Hypothetical protein BP 23.5 84 0.0029 25.1 4.4 50 491-543 21-71 (97)
118 2ea7_A 7S globulin-1; beta bar 23.2 1E+02 0.0034 32.8 6.0 54 488-542 61-114 (434)
119 3c3v_A Arachin ARAH3 isoform; 22.7 1.7E+02 0.0059 31.7 7.7 59 484-542 368-428 (510)
120 3fz3_A Prunin; TREE NUT allerg 22.7 2E+02 0.0068 31.3 8.1 61 483-543 389-451 (531)
121 3i7d_A Sugar phosphate isomera 22.4 1.1E+02 0.0039 27.2 5.5 48 491-543 46-95 (163)
122 1x82_A Glucose-6-phosphate iso 22.2 1.2E+02 0.0039 28.0 5.6 34 509-542 97-130 (190)
123 1o4t_A Putative oxalate decarb 22.0 1.4E+02 0.0049 25.4 5.9 46 492-542 61-107 (133)
124 3l2h_A Putative sugar phosphat 21.9 1.1E+02 0.0039 26.9 5.4 46 491-541 49-96 (162)
125 3es4_A Uncharacterized protein 21.7 95 0.0032 26.4 4.4 45 494-543 48-92 (116)
126 1fxz_A Glycinin G1; proglycini 21.0 1.6E+02 0.0056 31.5 7.2 56 487-542 337-394 (476)
127 1lj2_A NSP3-C, nonstructural R 20.8 3E+02 0.01 22.7 6.9 55 400-457 23-81 (110)
128 3lag_A Uncharacterized protein 20.7 35 0.0012 27.9 1.4 51 489-541 18-69 (98)
129 1vj2_A Novel manganese-contain 20.7 1.3E+02 0.0043 25.3 5.2 45 493-542 53-97 (126)
130 2f4p_A Hypothetical protein TM 20.4 2.3E+02 0.0077 24.6 7.0 48 492-543 52-99 (147)
131 2bnm_A Epoxidase; oxidoreducta 20.4 1.6E+02 0.0055 26.8 6.3 50 493-543 122-174 (198)
132 2pyt_A Ethanolamine utilizatio 20.2 1.2E+02 0.004 26.3 4.9 46 492-544 61-106 (133)
133 1y9q_A Transcriptional regulat 20.2 2.1E+02 0.0073 25.8 7.1 46 493-543 109-156 (192)
134 1sfn_A Conserved hypothetical 20.1 2.6E+02 0.0087 26.8 7.9 52 487-543 164-216 (246)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.98 E-value=6.4e-33 Score=297.26 Aligned_cols=340 Identities=19% Similarity=0.254 Sum_probs=128.2
Q ss_pred eCCCChhHHhHHHHHHHHHHHHHhhhhhhhhhhheecCCCCCCCcceecCcchhHHHHHHHHHHHHHHHHHHHHHhceeE
Q 005964 68 LDPRCDFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWHLWLQFRLAY 147 (667)
Q Consensus 68 i~P~s~~~~~W~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~if~~Di~l~f~t~y 147 (667)
+.|+|+.. +.+++++++.++++.-+. .. |+- .......+..++.++-++|.+|+++++..+
T Consensus 3 ~~p~s~~f---~~~~~~~i~ls~~~~~~~----t~---~~~--------~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~- 63 (355)
T 3beh_A 3 VLPFLRIY---APLNAVLAAPGLLAVAAL----TI---PDM--------SGRSRLALAALLAVIWGAYLLQLAATLLKR- 63 (355)
T ss_dssp ----CCSS---SSHHHHHHHHHHHHHHHH----TS---SSC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CCchhHHH---HHHHHHHHHHHHHHHHHH----cc---cch--------hhhHHHHHHHHHhHHHHHHHHHHHHhcccc-
Confidence 46777754 555555556666555431 11 110 011122344555566667899999987422
Q ss_pred EcCCcccccCCeEeecHHHHHHhhhcCCcchHHHHHhh-cchhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhHHHH
Q 005964 148 VSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVI-LPIPQAVLWLVVPKLIKEDRMKLIMTILILVILFQFLPKVY 226 (667)
Q Consensus 148 ~~~~s~~~~~g~~V~d~~~Ia~~Ylks~~~F~~Dlls~-lP~~~i~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~Llkl~ 226 (667)
+ . ...|.++ +|.++|++++ +|+..++. +.. +. .+++|++ |++|+.
T Consensus 64 --~-------~---------~~~~~~~-~~~i~Dl~~i~~p~~~~~~----~~~----~~---~r~lr~~----R~lrl~ 109 (355)
T 3beh_A 64 --R-------A---------GVVRDRT-PKIAIDVLAVLVPLAAFLL----DGS----PD---WSLYCAV----WLLKPL 109 (355)
T ss_dssp --C-------S---------CSSCCCH-HHHHHHHHHHHHHHHHHHS----CCS----GG---GGGGGGG----GGSHHH
T ss_pred --c-------c---------cceeccC-cchHHHHHHHHHHHHHHHh----ccc----hh---HHHHHHH----HHHHHH
Confidence 1 1 1246666 3999999999 69765321 110 11 1111111 222332
Q ss_pred HHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHhhhccCCCCCCccccccCCCCCCCc
Q 005964 227 HSLCLMRRMRKVTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSCSKVYHKSEFP 306 (667)
Q Consensus 227 r~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ll~~H~~aC~wy~i~~~~~~~c~~~~c~~~~~c~~~l~~~~~~~~~~w~ 306 (667)
|..+..+.+.+. +.. ...++...+++++++.|+.||++|.+... .
T Consensus 110 r~~~~~~~l~~~---l~~-~~~~l~~~~~~~~~~~~~~a~~~~~~e~~-------------------------------~ 154 (355)
T 3beh_A 110 RDSTFFPVLGRV---LAN-EARNLIGVTTLFGVVLFAVALAAYVIERD-------------------------------I 154 (355)
T ss_dssp HTCSSHHHHHHH---HHH-THHHHHHHHHHHHHHHHHHHHHHHHHHTT-------------------------------T
T ss_pred HHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------------------------------C
Confidence 222222222221 111 12234555666678899999999987421 0
Q ss_pred cccccccccCCCCCCCccccccccccccccCCchhhHHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHH
Q 005964 307 LALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFT 386 (667)
Q Consensus 307 ~~sw~~~~~c~~~~~~~~~g~y~~~~~~~~~~s~~~~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa 386 (667)
+ ++.+..|..|+||+++||||+||||+.|.+..|+++++++|++|+++++
T Consensus 155 ~------------------------------~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~ 204 (355)
T 3beh_A 155 Q------------------------------PEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFG 204 (355)
T ss_dssp C------------------------------HHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred C------------------------------CcccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHH
Confidence 0 1123468899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHHH
Q 005964 387 LLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATMGEDELDWIEDLPQGLRRDIKRYLCL 466 (667)
Q Consensus 387 ~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~~rV~~y~~~~~~~~~~de~~il~~Lp~~Lr~~i~~~l~~ 466 (667)
+.+|.+++.+.....+ +++.+ ..
T Consensus 205 ~~~~~i~~~~~~~~~~----------------------------~~~~~-----------------------------~~ 227 (355)
T 3beh_A 205 LWAGILATGFYQEVRR----------------------------GDFVR-----------------------------NW 227 (355)
T ss_dssp HHHHHHHHHHHHHHHH----------------------------HHHHH-----------------------------HH
T ss_pred HHHHHHHHHHHHHHHH----------------------------Hhhcc-----------------------------cc
Confidence 9999998876432110 00000 23
Q ss_pred HHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccch
Q 005964 467 DLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELL 546 (667)
Q Consensus 467 ~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~L 546 (667)
+.++++|+|++++++++++++..++.+.++|||.|+++||+++++|||.+|.++++..+ + ..+.+|++|||.++
T Consensus 228 ~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~----~--~~l~~G~~fGe~~~ 301 (355)
T 3beh_A 228 QLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN----P--VELGPGAFFGEMAL 301 (355)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC----e--eEECCCCEEeehHH
Confidence 56788899999999999999999999999999999999999999999999999998642 2 47899999999844
Q ss_pred hhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHH
Q 005964 547 SWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLK 598 (667)
Q Consensus 547 l~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~ 598 (667)
+.+.| +.++++|.++|+++.+++++|+++++++| .+.....+
T Consensus 302 --------l~~~~-~~~~~~A~~~~~l~~i~~~~f~~ll~~~p-~~~~~l~~ 343 (355)
T 3beh_A 302 --------ISGEP-RSATVSAATTVSLLSLHSADFQMLCSSSP-EIAEIFRK 343 (355)
T ss_dssp ----------------------------------------------------
T ss_pred --------hCCCC-cceEEEECccEEEEEEeHHHHHHHHHHCH-HHHHHHHH
Confidence 57778 79999999999999999999999999999 55554433
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.97 E-value=6.9e-30 Score=250.41 Aligned_cols=188 Identities=21% Similarity=0.381 Sum_probs=173.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHHHHHhhcCCCCCC
Q 005964 398 VVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATMGEDELDWIEDLPQGLRRDIKRYLCLDLVKKVPLFHC 477 (667)
Q Consensus 398 ~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~~rV~~y~~~~~~~~~~de~~il~~Lp~~Lr~~i~~~l~~~~l~~v~lF~~ 477 (667)
+++++..+|+++++.+++||+.+++|++|+.||++|++|.|+..+.+++++++.||+.||.++..+++.++++++|+|++
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~ 81 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVG 81 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhc
Confidence 57788999999999999999999999999999999999999855899999999999999999999999999999999999
Q ss_pred CCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCCCCC
Q 005964 478 LDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDR 557 (667)
Q Consensus 478 ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~ 557 (667)
++++++..++..++++.|.||++|+++||+++.+|||.+|.|+++. .+|+ .+..+.+|++||+.++ +.+
T Consensus 82 l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~-~~~~l~~G~~fGe~~~--------~~~ 150 (198)
T 2ptm_A 82 ADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGV-IATSLSDGSYFGEICL--------LTR 150 (198)
T ss_dssp CCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSC-EEEEECTTCEESCHHH--------HHS
T ss_pred CCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--cCCe-EEEEecCCCEechHHH--------cCC
Confidence 9999999999999999999999999999999999999999999985 5676 5789999999999865 466
Q ss_pred CCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHH
Q 005964 558 LPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLK 598 (667)
Q Consensus 558 ~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~ 598 (667)
.| +.++++|.++|+++.|++++|.++++++| .+....++
T Consensus 151 ~~-~~~~~~a~~~~~l~~i~~~~f~~ll~~~p-~~~~~~~~ 189 (198)
T 2ptm_A 151 ER-RVASVKCETYCTLFSLSVQHFNQVLDEFP-AMRKTMEE 189 (198)
T ss_dssp SC-CSSEEEESSCEEEEEEEHHHHHHHHHHCH-HHHHHHHH
T ss_pred Cc-cceEEEEeeEEEEEEEeHHHHHHHHHHCh-HHHHHHHH
Confidence 77 89999999999999999999999999999 56544443
No 3
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=1.2e-30 Score=258.71 Aligned_cols=198 Identities=21% Similarity=0.362 Sum_probs=171.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhc-CCCHHHHHhhCChhHHHHHHHHHHHHHhhc
Q 005964 393 QVSLQVVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATM-GEDELDWIEDLPQGLRRDIKRYLCLDLVKK 471 (667)
Q Consensus 393 ~~il~~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~~rV~~y~~~~~~~~-~~de~~il~~Lp~~Lr~~i~~~l~~~~l~~ 471 (667)
++|++++++++.+|+++++.+++||+++++|++|+.||++|++|.|..+ +.|++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 4688999999999999999999999999999999999999999999988 9999999999999999999999998877 8
Q ss_pred CCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccC
Q 005964 472 VPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLR 551 (667)
Q Consensus 472 v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~ 551 (667)
+|+|++++++++..++..++++.|.||++|+++||+++.+|||.+|.|+++. +| ..+..+.+|++||+.++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~~-~~~~~l~~G~~fGe~~~----- 150 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK---DN-TVLAILGKGDLIGSDSL----- 150 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES---SS-CEEEEECTTCEEECSCC-----
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE---CC-eEEEEecCCCCcCcHHh-----
Confidence 9999999999999999999999999999999999999999999999999974 45 34789999999999844
Q ss_pred CCCCCCC--CCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHHHHH
Q 005964 552 RPFKDRL--PASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYYS 605 (667)
Q Consensus 552 ~sf~~~~--p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r~ys 605 (667)
+.+. | ++++++|+++|+++.|++++|.++++++| .++...++...+-.+
T Consensus 151 ---~~~~~~~-~~~~v~a~~~~~l~~i~~~~f~~ll~~~p-~~~~~~~~~l~~~l~ 201 (212)
T 3ukn_A 151 ---TKEQVIK-TNANVKALTYCDLQYISLKGLREVLRLYP-EYAQKFVSEIQHDLT 201 (212)
T ss_dssp ---SSSSCCB-BCSEEEESSCEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHHEE
T ss_pred ---ccCCCCC-cceEEEEcccEEEEEEeHHHHHHHHHHCh-HHHHHHHHHHHHhhc
Confidence 5666 6 89999999999999999999999999999 677666665555433
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=1.8e-29 Score=248.42 Aligned_cols=186 Identities=20% Similarity=0.337 Sum_probs=170.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHHHHHHHHHHHHHhhcCCCCC
Q 005964 397 QVVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATMGEDELDWIEDLPQGLRRDIKRYLCLDLVKKVPLFH 476 (667)
Q Consensus 397 ~~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~~rV~~y~~~~~~~~~~de~~il~~Lp~~Lr~~i~~~l~~~~l~~v~lF~ 476 (667)
+++++++.+|+++++.+++||+.+++|++|+.||++|++|.|+..+.+++++++.||+.||.+|..+++.++++++|+|.
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~ 81 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFA 81 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchh
Confidence 46788999999999999999999999999999999999999985599999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCCCC
Q 005964 477 CLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKD 556 (667)
Q Consensus 477 ~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~ 556 (667)
+++++++..++..+++..|.||++|+++||+++.+|||.+|.|+++. .+|++. .+.+|++||+.++ +.
T Consensus 82 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~--~~g~~~--~l~~G~~fGe~~~--------~~ 149 (202)
T 3bpz_A 82 NADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNKEM--KLSDGSYFGEICL--------LT 149 (202)
T ss_dssp TSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC--TTSCCE--EEETTCEECHHHH--------HH
T ss_pred cCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE--CCCeEE--EEcCCCEeccHHH--------hc
Confidence 99999999999999999999999999999999999999999999974 567653 6899999999855 46
Q ss_pred CCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHH
Q 005964 557 RLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADER 596 (667)
Q Consensus 557 ~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~ 596 (667)
+.| +.++++|.++|+++.|++++|.++++++| .++...
T Consensus 150 ~~~-~~~~v~a~~~~~l~~i~~~~f~~ll~~~p-~~~~~~ 187 (202)
T 3bpz_A 150 RGR-RTASVRADTYCRLYSLSVDNFNEVLEEYP-MMRRAF 187 (202)
T ss_dssp CSB-CSSEEEESSCEEEEEEEHHHHHHHHHHSG-GGHHHH
T ss_pred CCC-cccEEEEeeEEEEEEEEHHHHHHHHHHCH-HHHHHH
Confidence 677 89999999999999999999999999999 454433
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.84 E-value=2.6e-20 Score=186.03 Aligned_cols=212 Identities=15% Similarity=0.170 Sum_probs=141.3
Q ss_pred HhHHHHHHHHHHHHHhhhhhhhhhhheecCCCCCCCcceecCcchhHHHHHHHHHHHHHHHHHHHHHhceeEEcCCcccc
Q 005964 76 QKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWHLWLQFRLAYVSRESLVV 155 (667)
Q Consensus 76 ~~W~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~if~~Di~l~f~t~y~~~~s~~~ 155 (667)
..||.++++++++++++.++.. .+.+ +. +....+..+|.+++++|.+|++++|.++.
T Consensus 8 ~~f~~~i~~lil~~~~~~~~~~-~~~~----~~----------~~~~~l~~~d~~~~~iF~~e~~lr~~~~~-------- 64 (223)
T 1orq_C 8 PLVELGVSYAALLSVIVVVVEC-TMQL----SG----------EYLVRLYLVDLILVIILWADYAYRAYKSG-------- 64 (223)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHH-HHHH----TT----------CTTTHHHHHHHHHHHHHHHHHHHHHHTTS--------
T ss_pred chHHHHHHHHHHHHHHHHHHHH-hccc----Ch----------hhhhHHHHHHHHHHHHHHHHHHHHHcccc--------
Confidence 3589999999999998877632 1122 11 11236789999999999999999999861
Q ss_pred cCCeEeecHHHHHHhhhcCCcchHHHHHhhcchhhhhhhhccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 005964 156 GCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIKEDRMKLIMTILILVILFQFLPKVYHSLCLMRRM 235 (667)
Q Consensus 156 ~~g~~V~d~~~Ia~~Ylks~~~F~~Dlls~lP~~~i~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~Llkl~r~~~l~~~l 235 (667)
+ +++|+|+ +++|+++++|++...... .+. .....+|++ |++|++|+.|+.+..
T Consensus 65 -------~----~~~y~~~---~iiDllailP~~~~~~~~--------~~~-~~~~~lr~l----RllRllR~~r~~~~~ 117 (223)
T 1orq_C 65 -------D----PAGYVKK---TLYEIPALVPAGLLALIE--------GHL-AGLGLFRLV----RLLRFLRILLIISRG 117 (223)
T ss_dssp -------C----HHHHHHH---HHHHCTTHHHHHHHHHHH--------HHH-HTTTCHHHH----HHHHHHHHHHHHHSC
T ss_pred -------c----HHHHHHH---hHHHHHHHHHHHHHHHHh--------cch-hHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 1 4799984 899999999988654210 000 001112222 233444444433322
Q ss_pred hhhccccccch-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHhhhccCCCCCCccccccCCCCCCCccccccccc
Q 005964 236 RKVTGYIFGTV-WWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSKSCDFPVSCSKVYHKSEFPLALMVGKS 314 (667)
Q Consensus 236 ~~~~~~~~~~~-~~~~~~~l~~~ll~~H~~aC~wy~i~~~~~~~c~~~~c~~~~~c~~~l~~~~~~~~~~w~~~sw~~~~ 314 (667)
.+..+.+.... ..++...++..++..|+.||++|++... + .
T Consensus 118 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~--------------------------~-----~------- 159 (223)
T 1orq_C 118 SKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYP--------------------------D-----P------- 159 (223)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--------------------------S-----T-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------------------C-----c-------
Confidence 22111111000 0134445556667889999998875310 0 0
Q ss_pred cCCCCCCCccccccccccccccCCchhhHHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005964 315 SCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQV 394 (667)
Q Consensus 315 ~c~~~~~~~~~g~y~~~~~~~~~~s~~~~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~ 394 (667)
++....|..|+||+++|+||+||||+.|.+..|++++++.|++|..++|+.+|.+++
T Consensus 160 -----------------------~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~ 216 (223)
T 1orq_C 160 -----------------------NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSN 216 (223)
T ss_dssp -----------------------TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011236889999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 005964 395 SLQV 398 (667)
Q Consensus 395 il~~ 398 (667)
.+++
T Consensus 217 ~~~~ 220 (223)
T 1orq_C 217 MFQK 220 (223)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 6
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.79 E-value=1.4e-18 Score=163.00 Aligned_cols=141 Identities=18% Similarity=0.301 Sum_probs=118.5
Q ss_pred HHHHHhhCChhHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEE
Q 005964 445 ELDWIEDLPQGLRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQS 524 (667)
Q Consensus 445 e~~il~~Lp~~Lr~~i~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~ 524 (667)
.+++++.||+.||.++..+++.++++++|+|++++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cCCCeEEEEEcCCCCeEeccchhhccCCCCCCC--CCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHH
Q 005964 525 LSKGKLATSVLGPGGFLGDELLSWCLRRPFKDR--LPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKR 599 (667)
Q Consensus 525 ~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~--~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~ 599 (667)
++ ..+..+.+|++||+.++ +.+ .| +.++++|.++|+++.|++++|.++++++| .++...++.
T Consensus 84 --~~-~~~~~~~~G~~fG~~~~--------~~~~~~~-~~~~~~a~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~ 147 (160)
T 4f8a_A 84 --DD-EVVAILGKGDVFGDVFW--------KEATLAQ-SCANVRALTYCDLHVIKRDALQKVLEFYT-AFSHSFSRN 147 (160)
T ss_dssp --TT-EEEEEEETTCEEECCTT--------TCSSCCB-CSSEEEESSCEEEEEEEHHHHHHHHHHCH-HHHHHHHHH
T ss_pred --CC-EEEEEecCCCEeCcHHH--------hcCcccc-eEEEEEECCceEEEEEcHHHHHHHHHHHH-HHHHHHHHH
Confidence 22 45789999999999854 455 56 89999999999999999999999999999 665554433
No 7
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.77 E-value=2.1e-18 Score=192.15 Aligned_cols=301 Identities=8% Similarity=0.049 Sum_probs=150.0
Q ss_pred ceeCCC-ChhHHhHHHHHHHHHHHHHhhhhhhhhhhheecCCCCCCC---------------cceecCcchhHHHHHHHH
Q 005964 66 RILDPR-CDFVQKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGA---------------PCVYMDAELALIVTVIRT 129 (667)
Q Consensus 66 ~ii~P~-s~~~~~W~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~ 129 (667)
-+=+|. |...++|+.++++++++++++..+.- .+.+...++..+. +|. ......+.+++.
T Consensus 171 l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~ie~ 246 (514)
T 2r9r_B 171 LFEYPESSGPARIIAIVSVMVILISIVSFCLET-LPIFRDENEDMHGGGVTFHTYSQSTIGYQQS---TSFTDPFFIVET 246 (514)
T ss_dssp TTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHTCSTTTTSCCCCHHHHHHHHHSSCCC---TTCCCHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhc-ccccccccccccccccccccccccccccccc---chhhhHHHHHHH
Confidence 344576 56889999999999998888776521 1111000000000 000 011236789999
Q ss_pred HHHHHHHHHHHHHhceeEEcCCcccccCCeEeecHHHHHHhhhcCCcchHHHHHhhcchhhhhhhhccccccchhhH-HH
Q 005964 130 CVDVVHLWHLWLQFRLAYVSRESLVVGCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQAVLWLVVPKLIKEDRM-KL 208 (667)
Q Consensus 130 ~~D~if~~Di~l~f~t~y~~~~s~~~~~g~~V~d~~~Ia~~Ylks~~~F~~Dlls~lP~~~i~~~~~~~~~~~~~~~-~~ 208 (667)
+++++|.+|++++|.++ +. ..+|+|+ +|.++|+++++|+.+.+...... ..+.. ..
T Consensus 247 i~~~iFtiE~ilR~~~~-----------~~--------k~~Y~ks-~wniiDli~iip~~i~l~~~~~~---~~~~~~~~ 303 (514)
T 2r9r_B 247 LCIIWFSFEFLVRFFAC-----------PS--------KAGFFTN-IMNIIDIVAIIPYYVTIFLTESN---KSVLQFQN 303 (514)
T ss_dssp HHHHHHHHHHHHHHHHS-----------SC--------SSSSTTS-HHHHHHHHTTHHHHHHHHHHHTS---CSHHHHHT
T ss_pred HHHHHHHHHHHHHHHhC-----------Cc--------HHHHHhc-hhHHHHHHHHHHHHHHHHhhhcc---ccchhhhh
Confidence 99999999999999865 10 2489999 48999999999987644332110 01110 11
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHhhhccCC
Q 005964 209 IMTILILVILFQFLPKVYHSLCLMRRMRKVTGYIFGTVWWGFCINLIAYLIFSHVAGGCWYALATQRIVSCLQQQCENSK 288 (667)
Q Consensus 209 ~~~~l~l~~l~~~Llkl~r~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~ll~~H~~aC~wy~i~~~~~~~c~~~~c~~~~ 288 (667)
....+++++++ |++|++|+.+....++.....+..+ ...+..++++.++..+++|+++|++..
T Consensus 304 ~~~~lrvlRll-RvlRilkL~r~~~~l~~l~~tl~~s-~~~l~~ll~~l~i~~~if~~~~~~~e~--------------- 366 (514)
T 2r9r_B 304 VRRVVQIFRIM-RILRIFKLSRHSKGLQILGQTLKAS-MRELGLLIFFLFIGVILFSSAVYFAEA--------------- 366 (514)
T ss_dssp THHHHHHHHHH-GGGGGGGGGGSCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhheeec---------------
Confidence 12233333222 2333333332222222221111111 112333334445567778888776411
Q ss_pred CCCCccccccCCCCCCCccccccccccCCCCCCCccccccccccccccCCchhhHHHHHHHHHHHHhhccCccccCCCch
Q 005964 289 SCDFPVSCSKVYHKSEFPLALMVGKSSCLDDDGPYRYGIYAAALPVISSNSTADTILYPIFWGLLNLSSFGNELEPTSNV 368 (667)
Q Consensus 289 ~c~~~l~~~~~~~~~~w~~~sw~~~~~c~~~~~~~~~g~y~~~~~~~~~~s~~~~Yl~slYwa~~TlttvGygd~~~~n~ 368 (667)
+.. .+.+..|..|+||+++||||+||||+.|.+.
T Consensus 367 ----------------~~~------------------------------~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~ 400 (514)
T 2r9r_B 367 ----------------DER------------------------------DSQFPSIPDAFWWAVVSMTTVGYGDMVPTTI 400 (514)
T ss_dssp ----------------TCT------------------------------TCSCSSHHHHHHHHHHHHTTCCCSSSCCCSH
T ss_pred ----------------cCC------------------------------CccccchhhhhheeeeEEEecccCCCCCCCc
Confidence 000 0112357799999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCHHHH
Q 005964 369 LEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRRQLTSGLKWRVRHFERQRWATMGEDELDW 448 (667)
Q Consensus 369 ~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~~rV~~y~~~~~~~~~~de~~i 448 (667)
.++++++++|++|++++++.+|.+.+.++....++.+ ++..+.-++++.....|.....+ + .+......+.-
T Consensus 401 ~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~-~~~~~l~~h~iicg~~~~~~~l~--~-----~~~~~~~~~s~ 472 (514)
T 2r9r_B 401 GGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE-GEEQAQYLQVTSSPKIPSSPDLK--K-----SRSASTISKSD 472 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC--------------------------------------------
T ss_pred chHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCEEEeCCCccchhHH--h-----cccCCCccccc
Confidence 9999999999999999999999999877666543222 12222223344333333322211 0 01112233444
Q ss_pred HhhCChhHHHHHHHHH
Q 005964 449 IEDLPQGLRRDIKRYL 464 (667)
Q Consensus 449 l~~Lp~~Lr~~i~~~l 464 (667)
..+|.+.++.++...-
T Consensus 473 ~~el~e~~~~~~~~~~ 488 (514)
T 2r9r_B 473 YMEIQEGVNNSNEDFR 488 (514)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 5667777776665444
No 8
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.73 E-value=5.9e-17 Score=156.90 Aligned_cols=154 Identities=17% Similarity=0.335 Sum_probs=129.9
Q ss_pred HHHHHhhCChhH----HHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEE
Q 005964 445 ELDWIEDLPQGL----RRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIK 520 (667)
Q Consensus 445 e~~il~~Lp~~L----r~~i~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~ 520 (667)
+..+.+.+++++ +.+....-..++++++|+|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 344555555553 2344455567899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCeEE-EEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHH
Q 005964 521 RSQSLSKGKLA-TSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKR 599 (667)
Q Consensus 521 v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~ 599 (667)
++..+.+|++. +..+.+|++||+.++ +.+.| +.++++|.++|+++.|++++|.++++++| .++...++.
T Consensus 93 v~~~~~~g~~~~~~~~~~G~~fGe~~~--------l~~~~-~~~~v~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~l~~~ 162 (187)
T 3gyd_A 93 VIKDIPNKGIQTIAKVGAGAIIGEMSM--------IDGMP-RSASCVASLPTDFAVLSRDALYQLLANMP-KLGNKVLIR 162 (187)
T ss_dssp EEEEETTTEEEEEEEEETTCEESHHHH--------HHCCC-CSSEEEEEEEEEEEEEEHHHHHHHHHHCH-HHHHHHHHH
T ss_pred EEEECCCCCeEEEEEccCCCeeeeHHH--------hCCCC-eeEEEEECCCeEEEEEcHHHHHHHHHHCh-HHHHHHHHH
Confidence 99988889774 889999999999865 46677 79999999999999999999999999999 787777766
Q ss_pred HHHHHHhhh
Q 005964 600 ITRYYSSNW 608 (667)
Q Consensus 600 ~~r~ys~~~ 608 (667)
..+..+...
T Consensus 163 l~~~l~~rl 171 (187)
T 3gyd_A 163 LLQLLTARF 171 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655544433
No 9
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.71 E-value=3.3e-17 Score=159.02 Aligned_cols=126 Identities=16% Similarity=0.172 Sum_probs=111.6
Q ss_pred HHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEecc
Q 005964 466 LDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDE 544 (667)
Q Consensus 466 ~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~ 544 (667)
..+++++|.|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+|++. +.++.+|++||+.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~ 85 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY 85 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence 456778899999999999999999999999999999999999999999999999999988899875 8899999999986
Q ss_pred chhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHH
Q 005964 545 LLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRI 600 (667)
Q Consensus 545 ~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~ 600 (667)
. +++.+.| +.++++|+++|+++.+++++|.++++++| .+....++..
T Consensus 86 ~-------~~~~~~~-~~~~~~a~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~~ 132 (194)
T 3dn7_A 86 M-------AFQKQQP-ADFYIQSVENCELLSITYTEQENLFERIP-ALERYFRLVY 132 (194)
T ss_dssp H-------HHHHTCB-CSSEEEESSCEEEEEEEHHHHHHHHHHCT-THHHHHHHHH
T ss_pred H-------HHhcCCC-CceEEEEECCEEEEEEeHHHHHHHHHhCH-HHHHHHHHHH
Confidence 2 2246777 78999999999999999999999999999 5555444433
No 10
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.71 E-value=5e-17 Score=148.98 Aligned_cols=130 Identities=15% Similarity=0.232 Sum_probs=111.4
Q ss_pred HHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeE-E---EEEcCCCCeEe
Q 005964 467 DLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKL-A---TSVLGPGGFLG 542 (667)
Q Consensus 467 ~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~-~---i~~l~~G~~fG 542 (667)
+.++++|+|++++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+|++ . +..+.+|++||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG 85 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG 85 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence 5688999999999999999999999999999999999999999999999999999887777754 4 78999999999
Q ss_pred ccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHHHHHh
Q 005964 543 DELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYYSS 606 (667)
Q Consensus 543 e~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r~ys~ 606 (667)
+.++ +.+.| +.++++|.++|+++.|++++|.++++++| .++...++...+..++
T Consensus 86 ~~~~--------~~~~~-~~~~~~a~~~~~~~~i~~~~~~~l~~~~p-~~~~~l~~~l~~~l~~ 139 (142)
T 3mdp_A 86 VSSL--------IKPYH-YTSSARATKPVRVVDINGARLREMSENNQ-ALGQVLMNNVAAAVLA 139 (142)
T ss_dssp GGGS--------STTCB-CSSEEEESSCEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHHHHH
T ss_pred hHHH--------cCCCC-ceEEEEECCcEEEEEEeHHHHHHHHHHCh-HHHHHHHHHHHHHHHH
Confidence 9844 57777 89999999999999999999999999999 7887777666654443
No 11
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.70 E-value=4.6e-17 Score=149.25 Aligned_cols=126 Identities=19% Similarity=0.289 Sum_probs=115.3
Q ss_pred hCChhHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeE
Q 005964 451 DLPQGLRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKL 530 (667)
Q Consensus 451 ~Lp~~Lr~~i~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~ 530 (667)
++|..+|.+.......++++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g~- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EGV- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TTE-
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CCE-
Confidence 6888999999999999999999999999999999999999999999999999999999999999999999964 565
Q ss_pred EEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcH
Q 005964 531 ATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 531 ~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p 589 (667)
.+..+.+|++||+.++ +.+.| +.++++|+++|+++.|++++|.++++++|
T Consensus 83 ~~~~~~~G~~fGe~~~--------l~~~~-~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 132 (139)
T 3ocp_A 83 KLCTMGPGKVFGELAI--------LYNCT-RTATVKTLVNVKLWAIDRQCFQTIMMRTG 132 (139)
T ss_dssp EEEEECTTCEESCHHH--------HHCCC-CSSEEEESSCEEEEEEEHHHHHHHHTC--
T ss_pred EEEEeCCCCEeccHHH--------HCCCC-cceEEEECcceEEEEEcHHHHHHHHhhCh
Confidence 5789999999999865 35677 78999999999999999999999999999
No 12
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.70 E-value=1.5e-16 Score=146.90 Aligned_cols=121 Identities=24% Similarity=0.406 Sum_probs=109.9
Q ss_pred HHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEecc
Q 005964 466 LDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDE 544 (667)
Q Consensus 466 ~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~ 544 (667)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.++++..+.+|++. +..+.+|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 357899999999999999999999999999999999999999999999999999999888888775 8899999999998
Q ss_pred chhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHH
Q 005964 545 LLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADER 596 (667)
Q Consensus 545 ~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~ 596 (667)
++ +.+.| +..+++|.++|+++.|++++|.++++++| .+....
T Consensus 84 ~~--------~~~~~-~~~~~~a~~~~~~~~i~~~~~~~l~~~~p-~~~~~~ 125 (149)
T 2pqq_A 84 SL--------FDPGP-RTATGTALTEVKLLALGHGDLQPWLNVRP-EVATAL 125 (149)
T ss_dssp GG--------TSCEE-CSSEEEESSCEEEEEEEGGGHHHHHHHCT-HHHHHH
T ss_pred Hh--------cCCCC-cceEEEEccceEEEEEeHHHHHHHHHhCc-HHHHHH
Confidence 54 56677 89999999999999999999999999999 444433
No 13
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.67 E-value=1.5e-15 Score=149.76 Aligned_cols=126 Identities=21% Similarity=0.311 Sum_probs=111.7
Q ss_pred hhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchh
Q 005964 469 VKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLS 547 (667)
Q Consensus 469 l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll 547 (667)
++++|+|.++++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+|++. +..+.+|++||+.++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~- 79 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSL- 79 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHH-
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhh-
Confidence 468899999999999999999999999999999999999999999999999999988889874 889999999999855
Q ss_pred hccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 005964 548 WCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYY 604 (667)
Q Consensus 548 ~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r~y 604 (667)
+.+.| +.++++|.++|+++.+++++|.++++++| .+....++...+..
T Consensus 80 -------~~~~~-~~~~~~a~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~~ 127 (216)
T 4ev0_A 80 -------LDEGE-RSASAVAVEDTELLALFREDYLALIRRLP-LVAHNLAALLARRL 127 (216)
T ss_dssp -------HHCCB-CSSEEEESSSEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHHH
T ss_pred -------cCCCC-cceEEEEcCCEEEEEEcHHHHHHHHHHCc-HHHHHHHHHHHHHH
Confidence 46677 79999999999999999999999999999 77776666555533
No 14
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.66 E-value=1.4e-16 Score=150.04 Aligned_cols=123 Identities=20% Similarity=0.251 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEc
Q 005964 457 RRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVL 535 (667)
Q Consensus 457 r~~i~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l 535 (667)
+.+.......++++++|+|++++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++. +.+|++. +..+
T Consensus 28 ~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~ 106 (161)
T 3idb_B 28 KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNY 106 (161)
T ss_dssp CCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEEEE
T ss_pred CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEc
Confidence 3344455567899999999999999999999999999999999999999999999999999999998 6678764 8899
Q ss_pred CCCCeEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcH
Q 005964 536 GPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 536 ~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p 589 (667)
.+|++||+.++ +.+.| +.++++|.++|+++.|++++|.++++++|
T Consensus 107 ~~G~~fGe~~~--------~~~~~-~~~~v~A~~~~~~~~i~~~~~~~l~~~~p 151 (161)
T 3idb_B 107 DNRGSFGELAL--------MYNTP-RAATITATSPGALWGLDRVTFRRIIVKNN 151 (161)
T ss_dssp ESCCEECGGGG--------TCCCC-CSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred CCCCEechHHH--------HcCCC-cccEEEECCCeEEEEEeHHHHHHHHHHCH
Confidence 99999999855 56778 89999999999999999999999999999
No 15
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.66 E-value=7e-16 Score=143.34 Aligned_cols=126 Identities=16% Similarity=0.222 Sum_probs=108.0
Q ss_pred HHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEecc
Q 005964 466 LDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDE 544 (667)
Q Consensus 466 ~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~ 544 (667)
.++++++|+|..++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+|++. +..+.+|++||+.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 90 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 90 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence 467899999999999999999999999999999999999999999999999999999877778765 8899999999998
Q ss_pred chhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHH
Q 005964 545 LLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRI 600 (667)
Q Consensus 545 ~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~ 600 (667)
++ +.+.|.+.++++|.++|+++.|++++|.++++++| .+....++..
T Consensus 91 ~~--------~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p-~~~~~l~~~~ 137 (154)
T 2z69_A 91 MM--------FMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNT-PLALALLAKL 137 (154)
T ss_dssp GG--------GSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCH-HHHHHHHHHH
T ss_pred hh--------ccCCCCCceEEEEccceEEEEECHHHHHHHHHHCh-HHHHHHHHHH
Confidence 55 45555368999999999999999999999999999 5655554443
No 16
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.64 E-value=1.3e-15 Score=151.56 Aligned_cols=128 Identities=16% Similarity=0.402 Sum_probs=115.7
Q ss_pred HHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEecc
Q 005964 466 LDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDE 544 (667)
Q Consensus 466 ~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~ 544 (667)
.++++++|+|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+|++. +..+.+|++||+.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 467899999999999999999999999999999999999999999999999999999888889875 8899999999998
Q ss_pred chhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 005964 545 LLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRY 603 (667)
Q Consensus 545 ~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r~ 603 (667)
++ +.+.| +.++++|+++|+++.|++++|.++++++| .+....++...+.
T Consensus 85 ~~--------~~~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~ 133 (227)
T 3d0s_A 85 SI--------FDPGP-RTSSATTITEVRAVSMDRDALRSWIADRP-EISEQLLRVLARR 133 (227)
T ss_dssp HH--------HSCSC-CSSEEEESSCEEEEEEEHHHHHHTTSSCH-HHHHHHHHHHHHH
T ss_pred HH--------cCCCC-ceeEEEEcccEEEEEEeHHHHHHHHHHCh-HHHHHHHHHHHHH
Confidence 55 46677 89999999999999999999999999999 7777666555443
No 17
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.64 E-value=3.1e-15 Score=149.16 Aligned_cols=128 Identities=15% Similarity=0.226 Sum_probs=114.0
Q ss_pred HHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEecc
Q 005964 466 LDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDE 544 (667)
Q Consensus 466 ~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~ 544 (667)
.++++++|+|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+|++. +..+.+|++||+.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 467899999999999999999999999999999999999999999999999999999888888875 8899999999998
Q ss_pred chhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 005964 545 LLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRY 603 (667)
Q Consensus 545 ~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r~ 603 (667)
++ +.+.| +.++++|+++|+++.+++++|.++++++| .+....++...+.
T Consensus 85 ~~--------~~~~~-~~~~~~a~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~ 133 (231)
T 3e97_A 85 AV--------LAHQE-RSASVRALTPVRTLMLHREHFELILRRHP-RVLWNLAEMLARR 133 (231)
T ss_dssp TT--------TCCCC-CCEEEEESSCEEEEEECHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_pred HH--------hCCCC-ceEEEEECCcEEEEEEeHHHHHHHHHHCH-HHHHHHHHHHHHH
Confidence 44 57778 89999999999999999999999999999 7776666554443
No 18
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.64 E-value=8.3e-16 Score=154.00 Aligned_cols=129 Identities=13% Similarity=0.174 Sum_probs=116.3
Q ss_pred HHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEec
Q 005964 465 CLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGD 543 (667)
Q Consensus 465 ~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe 543 (667)
..++++++|+|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+|++. +..+.+|++||+
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~ 88 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGE 88 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECH
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEech
Confidence 3578999999999999999999999999999999999999999999999999999999988889875 889999999999
Q ss_pred cchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 005964 544 ELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRY 603 (667)
Q Consensus 544 ~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r~ 603 (667)
.++ +.+.| +.++++|+++|+++.+++++|.++++++| .+....++...+.
T Consensus 89 ~~~--------~~~~~-~~~~~~a~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~ 138 (237)
T 3fx3_A 89 AVA--------LRNTP-YPVSAEAVTPCEVMHIPSPVFVSLMRRDP-EICISILATTFGH 138 (237)
T ss_dssp HHH--------HHTCC-CSSEEEESSSEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_pred HHH--------hcCCC-CCceEEECCceEEEEEcHHHHHHHHHHCH-HHHHHHHHHHHHH
Confidence 865 35667 79999999999999999999999999999 7776666555443
No 19
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.63 E-value=4.3e-15 Score=146.82 Aligned_cols=127 Identities=12% Similarity=0.094 Sum_probs=113.0
Q ss_pred HHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCe--Eec
Q 005964 467 DLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGF--LGD 543 (667)
Q Consensus 467 ~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~--fGe 543 (667)
++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+|++. +..+.+|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 57899999999999999999999999999999999999999999999999999999988889875 889999999 677
Q ss_pred cchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 005964 544 ELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRY 603 (667)
Q Consensus 544 ~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r~ 603 (667)
.++ +.+.| +..+++|+++|+++.+++++|.++++++| .+....++...+.
T Consensus 83 ~~~--------~~~~~-~~~~~~a~~~~~~~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~ 132 (220)
T 3dv8_A 83 SCI--------MRSIQ-FEVTIEAEKDTDLWIIPAEIYKGIMKDSA-PVANYTNELMATR 132 (220)
T ss_dssp GGG--------CTTCC-CCCEEEESSCEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_pred HHH--------hCCCC-CceEEEEeeeeEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHH
Confidence 643 57778 89999999999999999999999999999 7777666555443
No 20
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.62 E-value=1.8e-15 Score=151.45 Aligned_cols=128 Identities=15% Similarity=0.233 Sum_probs=113.4
Q ss_pred HHHhhcCCCCCCCCHHHHHHHhcc--ceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEe
Q 005964 466 LDLVKKVPLFHCLDDLVLDNICDR--VKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLG 542 (667)
Q Consensus 466 ~~~l~~v~lF~~ls~~~l~~i~~~--l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fG 542 (667)
.+.++++|+|..++++.++.++.. ++.+.|++|++|+++||+++.+|||.+|.|+++..+.+|++. +..+.+|++||
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG 96 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIE 96 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEEC
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeee
Confidence 467899999999999999999998 999999999999999999999999999999999888888764 88999999999
Q ss_pred ccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHH
Q 005964 543 DELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITR 602 (667)
Q Consensus 543 e~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r 602 (667)
+.++ +.+.|.+.++++|+++|+++.|++++|.++++++| .+....++...+
T Consensus 97 ~~~~--------~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~l~~~l~~ 147 (232)
T 1zyb_A 97 PQSL--------FGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYD-IFRLNYMNIVSN 147 (232)
T ss_dssp GGGG--------SSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSH-HHHHHHHHHHHH
T ss_pred ehHH--------hCCCCCCceEEEEccceEEEEEEHHHHHHHhccCH-HHHHHHHHHHHH
Confidence 9855 45555368999999999999999999999999999 676666555443
No 21
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.62 E-value=8.2e-15 Score=145.80 Aligned_cols=127 Identities=12% Similarity=0.181 Sum_probs=103.5
Q ss_pred HHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEecc
Q 005964 466 LDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDE 544 (667)
Q Consensus 466 ~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~ 544 (667)
...+++.++|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+|++. +..+.+|++||+.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 457889999999999999999999999999999999999999999999999999999888899875 8899999999998
Q ss_pred chhhccCCCCCCC-CCCcceEEEEeeeceEEeeCHHHHHHHHHHc-----HHHHHHHHHHHHHH
Q 005964 545 LLSWCLRRPFKDR-LPASPATFTCMESVEAYGLNASDLRYIADHF-----RYKLADERLKRITR 602 (667)
Q Consensus 545 ~Ll~~l~~sf~~~-~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~-----p~~~~~~~l~~~~r 602 (667)
++ +.+ .| +.++++|.++|+++.+++++|.++++++ | .+....++...+
T Consensus 90 ~~--------~~~~~~-~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p-~~~~~~~~~l~~ 143 (230)
T 3iwz_A 90 GL--------FIESDT-REVILRTRTQCELAEISYERLQQLFQTSLSPDAP-RILYAIGVQLSK 143 (230)
T ss_dssp GG--------TSCCSB-CCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHH-HHHHHHHHHHHH
T ss_pred hh--------hcCCCC-ceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCc-HHHHHHHHHHHH
Confidence 55 344 46 7899999999999999999999999999 8 676666555544
No 22
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.61 E-value=2.9e-15 Score=148.80 Aligned_cols=131 Identities=15% Similarity=0.212 Sum_probs=116.1
Q ss_pred HHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEecc
Q 005964 466 LDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDE 544 (667)
Q Consensus 466 ~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~ 544 (667)
.++++++|+|.+++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+|++. +..+.+|++||+.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 87 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 87 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH
Confidence 467899999999999999999999999999999999999999999999999999998877788764 7889999999998
Q ss_pred chhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHHHHH
Q 005964 545 LLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYYS 605 (667)
Q Consensus 545 ~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r~ys 605 (667)
++ +.+.|.+.++++|.++|+++.+++++|.++++++| .+....++...+...
T Consensus 88 ~~--------~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~l~ 139 (227)
T 3dkw_A 88 MM--------FMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNT-PLALALLAKLSTRLH 139 (227)
T ss_dssp TT--------TTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCT-HHHHHHHHHHHHHHH
T ss_pred Hh--------cCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCH-HHHHHHHHHHHHHHH
Confidence 44 56666468999999999999999999999999999 787776666555443
No 23
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.60 E-value=6.7e-15 Score=152.87 Aligned_cols=133 Identities=17% Similarity=0.267 Sum_probs=120.2
Q ss_pred HHHhhCChhHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcC
Q 005964 447 DWIEDLPQGLRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLS 526 (667)
Q Consensus 447 ~il~~Lp~~Lr~~i~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~ 526 (667)
....++|...|.+.......++++++++|++++++.+..++..++.+.|++|++|+++||.++.+|||.+|.|+++.
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--- 95 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--- 95 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE---
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE---
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCeEEEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHH
Q 005964 527 KGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLA 593 (667)
Q Consensus 527 ~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~ 593 (667)
+|. .+..+.+|++||+.++ +.+.| +.++++|.++|+++.|++++|.+++..+| ...
T Consensus 96 ~g~-~~~~~~~G~~fGe~~l--------l~~~~-~~~tv~a~~~~~l~~i~~~~~~~i~~~~~-~~~ 151 (299)
T 3shr_A 96 EGV-KLCTMGPGKVFGELAI--------LYNCT-RTATVKTLVNVKLWAIDRQCFQTIMMRTG-LIK 151 (299)
T ss_dssp TTE-EEEEECTTCEESCSGG--------GTTTB-CCSEEEESSCEEEEEECHHHHHHHHHHHH-HHH
T ss_pred CCE-EEEEeCCCCeeeHhHH--------hcCCC-CCcEEEEcCCeEEEEEcHHHHHHHhhHhH-HHH
Confidence 564 4788999999999966 46777 89999999999999999999999999999 443
No 24
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.60 E-value=4.3e-15 Score=135.51 Aligned_cols=119 Identities=29% Similarity=0.435 Sum_probs=105.1
Q ss_pred HHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccc
Q 005964 466 LDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDEL 545 (667)
Q Consensus 466 ~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~ 545 (667)
.++++++|+|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.++++..+ + ..+.+|++||+.+
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~----~--~~~~~G~~~G~~~ 83 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN----P--VELGPGAFFGEMA 83 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS----C--EEECTTCEECHHH
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC----c--ceECCCCEeeehH
Confidence 478999999999999999999999999999999999999999999999999999997532 2 4789999999986
Q ss_pred hhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHH
Q 005964 546 LSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRI 600 (667)
Q Consensus 546 Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~ 600 (667)
+ +.+.| +..+++|.++|+++.|++++|.++++++| .+....++..
T Consensus 84 ~--------~~~~~-~~~~~~a~~~~~~~~i~~~~~~~l~~~~p-~~~~~~~~~~ 128 (138)
T 1vp6_A 84 L--------ISGEP-RSATVSAATTVSLLSLHSADFQMLCSSSP-EIAEIFRKTA 128 (138)
T ss_dssp H--------HHCCC-CSSCEEESSSEEEEEEEHHHHHHHHHHCH-HHHHHHHHHH
T ss_pred h--------ccCCC-ceeEEEECCCEEEEEECHHHHHHHHHHCH-HHHHHHHHHH
Confidence 5 46667 78999999999999999999999999999 6665554443
No 25
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.59 E-value=6.4e-15 Score=155.58 Aligned_cols=124 Identities=17% Similarity=0.270 Sum_probs=112.4
Q ss_pred HHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccc
Q 005964 466 LDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDEL 545 (667)
Q Consensus 466 ~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~ 545 (667)
.++++++|+|++++++++..++..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+|++.+..+.+|++||+.+
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~ 91 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIA 91 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHH
Confidence 46889999999999999999999999999999999999999999999999999999998888988889999999999986
Q ss_pred hhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHH
Q 005964 546 LSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRI 600 (667)
Q Consensus 546 Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~ 600 (667)
+ +.+.| ++++++|+++|+++.|++++|.+++ ++| .+....++..
T Consensus 92 l--------~~~~~-~~~~v~A~~~~~~~~i~~~~~~~l~-~~p-~~~~~~~~~~ 135 (333)
T 4ava_A 92 L--------LRDSP-RSATVTTIEPLTGWTGGRGAFATMV-HIP-GVGERLLRTA 135 (333)
T ss_dssp H--------HHTCB-CSSEEEESSCEEEEEECHHHHHHHH-HST-THHHHHHHHH
T ss_pred h--------cCCCC-ceEEEEEecCEEEEEEcHHHHHHHH-hCh-HHHHHHHHHH
Confidence 6 46677 8999999999999999999999999 999 5555444333
No 26
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.59 E-value=6.6e-15 Score=137.42 Aligned_cols=114 Identities=21% Similarity=0.304 Sum_probs=104.5
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 463 YLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 463 ~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
....++++++|+|.+++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++. +|+ .+..+.+|++||
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~~-~~~~~~~G~~fG 109 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNE-WATSVGEGGSFG 109 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TTE-EEEEECTTCEEC
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CCE-EEEEecCCCEee
Confidence 3456789999999999999999999999999999999999999999999999999999986 555 467899999999
Q ss_pred ccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcH
Q 005964 543 DELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 543 e~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p 589 (667)
+.++ +.+.| +.++++|+++|+++.|++++|.++++++|
T Consensus 110 e~~~--------~~~~~-~~~~v~A~~~~~~~~i~~~~~~~ll~~~~ 147 (154)
T 3pna_A 110 ELAL--------IYGTP-RAATVKAKTNVKLWGIDRDSYRRILMGST 147 (154)
T ss_dssp CHHH--------HHCCC-CSSEEEESSCEEEEEEEHHHHHHHTHHHH
T ss_pred ehHh--------hcCCC-cceEEEECcceEEEEEeHHHHHHHHHhCh
Confidence 9866 46677 79999999999999999999999999999
No 27
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.57 E-value=3.9e-14 Score=138.82 Aligned_cols=120 Identities=17% Similarity=0.202 Sum_probs=104.0
Q ss_pred CCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhhccC
Q 005964 473 PLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSWCLR 551 (667)
Q Consensus 473 ~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~~l~ 551 (667)
++++.++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+|++. +..+.+|++||+.++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~----- 76 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL----- 76 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTT-----
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHH-----
Confidence 45677999999999999999999999999999999999999999999999888889875 889999999999854
Q ss_pred CCCCCCC-CCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHH
Q 005964 552 RPFKDRL-PASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITR 602 (667)
Q Consensus 552 ~sf~~~~-p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r 602 (667)
+.+. | +.++++|+++|+++.+++++|.++++++| .+....++...+
T Consensus 77 ---~~~~~~-~~~~~~a~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~ 123 (210)
T 3ryp_A 77 ---FEEGQE-RSAWVRAKTACEVAEISYKKFRQLIQVNP-DILMRLSAQMAR 123 (210)
T ss_dssp ---TSTTCB-CSSEEEESSCEEEEEEEHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred ---hcCCCC-ceEEEEECCcEEEEEEcHHHHHHHHHHCh-HHHHHHHHHHHH
Confidence 4555 6 89999999999999999999999999999 777666655544
No 28
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.57 E-value=7e-16 Score=140.72 Aligned_cols=117 Identities=38% Similarity=0.790 Sum_probs=101.6
Q ss_pred HHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-E--EEcCCCCeEec
Q 005964 467 DLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-T--SVLGPGGFLGD 543 (667)
Q Consensus 467 ~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i--~~l~~G~~fGe 543 (667)
++++++|+|..++++.++.++..++.+.|++|++|+++||.++.+|||.+|.|+++ ...+|++. + ..+.+|++||+
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fGe 84 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCGD 84 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSST
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEecH
Confidence 45789999999999999999999999999999999999999999999999999965 55677653 3 49999999999
Q ss_pred cchhhccCCCCCCCCC-----CcceEEEEeeeceEEeeCHHHHHHHHHHcH
Q 005964 544 ELLSWCLRRPFKDRLP-----ASPATFTCMESVEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 544 ~~Ll~~l~~sf~~~~p-----~~~~tv~A~~~~~l~~L~~~df~~l~~~~p 589 (667)
.++++. +.+.| .+.++++|+++|+++.|++++|.++++++|
T Consensus 85 ~~l~~~-----~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p 130 (137)
T 1wgp_A 85 ELLTWA-----LDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFR 130 (137)
T ss_dssp HHHHHH-----HCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHC
T ss_pred HHHHHH-----hccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCH
Confidence 864211 24443 267999999999999999999999999999
No 29
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.57 E-value=9.2e-15 Score=145.86 Aligned_cols=124 Identities=14% Similarity=0.237 Sum_probs=106.8
Q ss_pred cCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeE-EEEEcCCCCeEeccchhhc
Q 005964 471 KVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKL-ATSVLGPGGFLGDELLSWC 549 (667)
Q Consensus 471 ~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~-~i~~l~~G~~fGe~~Ll~~ 549 (667)
++|+|..++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++..+.+|++ .+..+.+|++||+.++
T Consensus 14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~--- 90 (232)
T 2gau_A 14 LRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPY--- 90 (232)
T ss_dssp SHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHH---
T ss_pred ccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehh---
Confidence 578999999999999999999999999999999999999999999999999987777876 4889999999999865
Q ss_pred cCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 005964 550 LRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYY 604 (667)
Q Consensus 550 l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r~y 604 (667)
+.+.| +.++++|+++|+++.|++++|.++++++| .+....++...+..
T Consensus 91 -----~~~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~l 138 (232)
T 2gau_A 91 -----FAEET-CSSTAIAVENSKVLAIPVEAIEALLKGNT-SFCRYFLKALAKEL 138 (232)
T ss_dssp -----HHTSC-CSSEEEESSCEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHHH
T ss_pred -----hCCCC-cceEEEEecceEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHHH
Confidence 45667 79999999999999999999999999999 77776666554433
No 30
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.56 E-value=2.7e-15 Score=136.58 Aligned_cols=124 Identities=17% Similarity=0.239 Sum_probs=106.8
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccceeeEec-CCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE
Q 005964 453 PQGLRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYS-KDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA 531 (667)
Q Consensus 453 p~~Lr~~i~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~-~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~ 531 (667)
||..|.+-......++++++++|..++++.+..++..++.+.|. +|++|+++||.++.+|||.+|.|+++. .+|++
T Consensus 2 ~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~- 78 (134)
T 2d93_A 2 SSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV- 78 (134)
T ss_dssp CCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE-
T ss_pred ChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE-
Confidence 34444444444456789999999999999999999999999999 999999999999999999999999984 57776
Q ss_pred EEEcCCCCeEeccchhhccCCCCCCCCCCcceEE-EEeeeceEEeeCHHHHHHHHHHcH
Q 005964 532 TSVLGPGGFLGDELLSWCLRRPFKDRLPASPATF-TCMESVEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 532 i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv-~A~~~~~l~~L~~~df~~l~~~~p 589 (667)
..+.+|++||+.++ +.+.| +.+++ +|.++|+++.|++++|.+++++++
T Consensus 79 -~~l~~G~~fG~~~~--------~~~~~-~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 -ENLFMGNSFGITPT--------LDKQY-MHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp -EEECTTCEESCCSS--------SCCEE-CCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred -EEecCCCccChhHh--------cCCCc-ceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 56899999999844 57777 67788 999999999999999999998876
No 31
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.55 E-value=1.1e-13 Score=135.18 Aligned_cols=117 Identities=15% Similarity=0.217 Sum_probs=103.0
Q ss_pred CCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhhccCCCCCC
Q 005964 478 LDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSWCLRRPFKD 556 (667)
Q Consensus 478 ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~~l~~sf~~ 556 (667)
++++.++.++..++.+.|+||++|+++||+++.+|||.+|.|+++..+.+|++. +..+.+|++||+.++ +.
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~--------~~ 72 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGL--------FE 72 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTT--------CC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHH--------hc
Confidence 578999999999999999999999999999999999999999999888888874 889999999999844 45
Q ss_pred CC----CCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 005964 557 RL----PASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYY 604 (667)
Q Consensus 557 ~~----p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r~y 604 (667)
+. | +.++++|+++|+++.+++++|.++++++| .+....++...+..
T Consensus 73 ~~~~~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~~ 122 (207)
T 2oz6_A 73 KEGSEQE-RSAWVRAKVECEVAEISYAKFRELSQQDS-EILYTLGSQMADRL 122 (207)
T ss_dssp -----CB-CCSEEEESSCEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHHH
T ss_pred CCCCCCC-cceEEEECCcEEEEEECHHHHHHHHHHCH-HHHHHHHHHHHHHH
Confidence 55 6 78999999999999999999999999999 77776666555433
No 32
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.52 E-value=2.4e-14 Score=133.39 Aligned_cols=64 Identities=9% Similarity=0.192 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 005964 342 DTILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKK 405 (667)
Q Consensus 342 ~~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~ 405 (667)
..|..|+||+++|+||+||||+.|.+..+++++++.+++|+.++++.+|.+++.+.+...++++
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~ 146 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRG 146 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC----
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588999999999999999999999999999999999999999999999999998776554433
No 33
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.52 E-value=1.4e-13 Score=142.12 Aligned_cols=127 Identities=17% Similarity=0.340 Sum_probs=111.4
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCC-e-EEEEEcCCCCe
Q 005964 463 YLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKG-K-LATSVLGPGGF 540 (667)
Q Consensus 463 ~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g-~-~~i~~l~~G~~ 540 (667)
.+...+++++++|..++++.+..++..++...|.+|++|+++||.++.+|||.+|.|+++....+| + ..+..+.+|++
T Consensus 153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~ 232 (291)
T 2qcs_B 153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDY 232 (291)
T ss_dssp HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCE
T ss_pred HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCE
Confidence 344567888999999999999999999999999999999999999999999999999998766555 3 34889999999
Q ss_pred EeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHH
Q 005964 541 LGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKR 599 (667)
Q Consensus 541 fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~ 599 (667)
|||.++ +.+.| +.++++|.++|+++.|++++|.+++.++| .+..+.++.
T Consensus 233 fGe~~l--------l~~~~-~~~tv~a~~~~~~~~i~~~~f~~~l~~~p-~~~~~~~~~ 281 (291)
T 2qcs_B 233 FGEIAL--------LMNRP-KAATVVARGPLKCVKLDRPRFERVLGPCS-DILKRNIQQ 281 (291)
T ss_dssp ECSGGG--------TCCCC-CSSEEEEEEEEEEEEEEHHHHHHHHCCHH-HHHTTSHHH
T ss_pred ecHHHH--------cCCCC-cceEEEECCcEEEEEEcHHHHHHHhccHH-HHHHHHHHH
Confidence 999865 57778 89999999999999999999999999999 555544443
No 34
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.52 E-value=4.8e-14 Score=146.38 Aligned_cols=128 Identities=17% Similarity=0.360 Sum_probs=112.4
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEc-CCCeE-EEEEcCCCCe
Q 005964 463 YLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSL-SKGKL-ATSVLGPGGF 540 (667)
Q Consensus 463 ~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~-~~g~~-~i~~l~~G~~ 540 (667)
....++++++|+|..++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++... .+|++ .+..+.+|++
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~ 232 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDW 232 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCE
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCE
Confidence 334577888999999999999999999999999999999999999999999999999999876 46765 4889999999
Q ss_pred EeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHH
Q 005964 541 LGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRI 600 (667)
Q Consensus 541 fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~ 600 (667)
||+.++ +.+.| +.++++|.++|+++.|++++|.+++.++| .+....++..
T Consensus 233 fGe~~l--------l~~~~-~~~tv~a~~~~~l~~i~~~~f~~ll~~~p-~~~~~~~~~l 282 (299)
T 3shr_A 233 FGEKAL--------QGEDV-RTANVIAAEAVTCLVIDRDSFKHLIGGLD-DVSNKAYEDA 282 (299)
T ss_dssp ECGGGG--------SSSEE-CSSEEEESSSEEEEEEEHHHHHHHHTTCC-CCCHHHHHHH
T ss_pred eChHHH--------hCCCC-cceEEEECCCEEEEEEeHHHHHHHHccHH-HHHHHHHHHH
Confidence 999965 57778 89999999999999999999999999999 5555444443
No 35
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.51 E-value=2.2e-13 Score=138.72 Aligned_cols=117 Identities=16% Similarity=0.216 Sum_probs=102.1
Q ss_pred CCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhhccCCCC
Q 005964 476 HCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSWCLRRPF 554 (667)
Q Consensus 476 ~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~~l~~sf 554 (667)
..++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+|++. +..+.+|++||+.++
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~-------- 126 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL-------- 126 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTT--------
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHH--------
Confidence 45899999999999999999999999999999999999999999999888889875 889999999999854
Q ss_pred CCCC-CCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHH
Q 005964 555 KDRL-PASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITR 602 (667)
Q Consensus 555 ~~~~-p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r 602 (667)
+.+. | +.++++|+++|+++.|++++|.++++++| .+....++...+
T Consensus 127 ~~~~~~-~~~~~~A~~~~~l~~i~~~~~~~l~~~~p-~l~~~l~~~l~~ 173 (260)
T 3kcc_A 127 FEEGQE-RSAWVRAKTACEVAEISYKKFRQLIQVNP-DILMRLSAQMAR 173 (260)
T ss_dssp TSTTCB-CCSEEEESSCEEEEEEEHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred hCCCCC-CceEEEECCCeEEEEEcHHHHHHHHHHCH-HHHHHHHHHHHH
Confidence 4555 6 89999999999999999999999999999 777666555444
No 36
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.50 E-value=8e-14 Score=137.42 Aligned_cols=121 Identities=15% Similarity=0.221 Sum_probs=100.1
Q ss_pred CCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhhcc
Q 005964 472 VPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSWCL 550 (667)
Q Consensus 472 v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~~l 550 (667)
-|.|+..+++....+...++.+.|++|++|+++||+++.+|||.+|.|+++..+.+|++. +..+.+|++||+.++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~---- 79 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFI---- 79 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGT----
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHH----
Confidence 467888899999999999999999999999999999999999999999999888889875 889999999999854
Q ss_pred CCCCCCCC-CCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHH
Q 005964 551 RRPFKDRL-PASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITR 602 (667)
Q Consensus 551 ~~sf~~~~-p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r 602 (667)
+.+. | +.++++|+++|+++.+++++|.++++++| .+....++...+
T Consensus 80 ----~~~~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~l~~~l~~ 126 (213)
T 1o5l_A 80 ----FSSEPR-FPVNVVAGENSKILSIPKEVFLDLLMKDR-ELLLFFLKDVSE 126 (213)
T ss_dssp ----TSSSCB-CSSEEEESSSEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHH
T ss_pred ----hcCCCC-ceEEEEEccceEEEEEeHHHHHHHHHHCH-HHHHHHHHHHHH
Confidence 3554 6 79999999999999999999999999999 776666555443
No 37
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.50 E-value=1.1e-13 Score=136.96 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=107.6
Q ss_pred HHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccc
Q 005964 467 DLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDEL 545 (667)
Q Consensus 467 ~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~ 545 (667)
.+++++|+|..++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++ .+.+|++. +..+.+|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~-- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT-- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES--
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC--
Confidence 35788999999999999999999999999999999999999999999999999995 66788775 889999999998
Q ss_pred hhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHHHH
Q 005964 546 LSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYY 604 (667)
Q Consensus 546 Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r~y 604 (667)
| +.++++|+++|+++.+++++|.++++++| .+....++...+..
T Consensus 81 -------------~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~~~~~~ 124 (220)
T 2fmy_A 81 -------------H-TRAFIQAMEDTTILYTDIRNFQNIVVEFP-AFSLNMVKVLGDLL 124 (220)
T ss_dssp -------------C-SSSEEEESSSEEEEEEEHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred -------------c-cceEEEEcCcEEEEEEeHHHHHHHHHHCH-HHHHHHHHHHHHHH
Confidence 2 68999999999999999999999999999 77777666555433
No 38
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.49 E-value=1.3e-13 Score=136.64 Aligned_cols=120 Identities=11% Similarity=0.065 Sum_probs=107.0
Q ss_pred HhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccch
Q 005964 468 LVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELL 546 (667)
Q Consensus 468 ~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~L 546 (667)
+++++|+|..++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++ .+.+|++. +..+.+|++|| .
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG-~-- 76 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC-M-- 76 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE-S--
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec-C--
Confidence 3678999999999999999999999999999999999999999999999999997 66788875 88999999999 2
Q ss_pred hhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHHHHH
Q 005964 547 SWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRYYS 605 (667)
Q Consensus 547 l~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r~ys 605 (667)
| +.++++|+++|+++.|++++|.++++++| .+....++...+...
T Consensus 77 ------------~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~l~ 121 (222)
T 1ft9_A 77 ------------H-SGCLVEATERTEVRFADIRTFEQKLQTCP-SMAWGLIAILGRALT 121 (222)
T ss_dssp ------------C-SSCEEEESSCEEEEEECHHHHHHHHHHCG-GGHHHHHHHHHHHHH
T ss_pred ------------C-CCEEEEEccceEEEEEeHHHHHHHHHHCh-HHHHHHHHHHHHHHH
Confidence 3 78999999999999999999999999999 777777666555443
No 39
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.48 E-value=9.4e-14 Score=149.68 Aligned_cols=128 Identities=17% Similarity=0.324 Sum_probs=112.0
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCe-E-EEEEcCCCCe
Q 005964 463 YLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGK-L-ATSVLGPGGF 540 (667)
Q Consensus 463 ~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~-~-~i~~l~~G~~ 540 (667)
.++..+++++++|..+++..+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++....+|. + .+..+.+|++
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~ 323 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDY 323 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCE
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCE
Confidence 4456788999999999999999999999999999999999999999999999999999997655554 2 4889999999
Q ss_pred EeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHH
Q 005964 541 LGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRI 600 (667)
Q Consensus 541 fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~ 600 (667)
||+.++ +.+.| +.++++|.++|+++.|++++|.+++..+| .+....+++.
T Consensus 324 fGe~al--------l~~~~-r~~tv~A~~~~~ll~i~~~~f~~ll~~~~-~i~~~~~~~~ 373 (381)
T 4din_B 324 FGEIAL--------LLNRP-RAATVVARGPLKCVKLDRPRFERVLGPCS-EILKRNIQRY 373 (381)
T ss_dssp ECTTGG--------GSCCB-CSSEEEESSCBEEEEEEHHHHHHHHCCHH-HHHHTTHHHH
T ss_pred echHHH--------hCCCC-ceeEEEEcCCEEEEEEeHHHHHHHHhhhH-HHHHHHHHHH
Confidence 999966 47788 89999999999999999999999999999 5554444433
No 40
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.47 E-value=3.3e-13 Score=139.29 Aligned_cols=125 Identities=19% Similarity=0.262 Sum_probs=110.9
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCe
Q 005964 461 KRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGF 540 (667)
Q Consensus 461 ~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~ 540 (667)
......++++++|+|.+++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++. +|+ .+..+.+|++
T Consensus 33 ~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g~-~~~~l~~G~~ 108 (291)
T 2qcs_B 33 TMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNE-WATSVGEGGS 108 (291)
T ss_dssp HHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TTE-EEEEECTTCE
T ss_pred HHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CCe-EEEEcCCCCc
Confidence 344567889999999999999999999999999999999999999999999999999999986 564 4789999999
Q ss_pred EeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHH
Q 005964 541 LGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKR 599 (667)
Q Consensus 541 fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~ 599 (667)
||+.++ +.+.| +.++++|.++|+++.|++++|.+++.++| .+....+..
T Consensus 109 fGe~~l--------~~~~~-~~~tv~a~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~ 157 (291)
T 2qcs_B 109 FGELAL--------IYGTP-RAATVKAKTNVKLWGIDRDSYRRILMGST-LRKRKMYEE 157 (291)
T ss_dssp ECGGGG--------TCCCB-CSSEEEESSCEEEEEEEHHHHHHHHHHHH-HHHHHHHHH
T ss_pred cchHHH--------hcCCC-CceEEEECCCEEEEEEEhHHHHHHHhhhH-HHHHHHHHH
Confidence 999865 56777 89999999999999999999999999999 565554443
No 41
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.47 E-value=1.1e-13 Score=138.71 Aligned_cols=115 Identities=23% Similarity=0.366 Sum_probs=104.2
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 463 YLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 463 ~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
.+...+++++|+|..++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.++++..+ ++ .+..+.+|++||
T Consensus 121 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~-~~--~~~~l~~g~~fG 197 (246)
T 3of1_A 121 LMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKG-QG--VINKLKDHDYFG 197 (246)
T ss_dssp HHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETT-TE--EEEEEETTCEEC
T ss_pred HHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcC-Cc--eEEEcCCCCccc
Confidence 344567889999999999999999999999999999999999999999999999999998632 22 578999999999
Q ss_pred ccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcH
Q 005964 543 DELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 543 e~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p 589 (667)
|.++ +.+.| +.++++|.++|+++.|++++|.+++..+|
T Consensus 198 e~~~--------~~~~~-~~~~v~a~~~~~~~~i~~~~f~~ll~~~~ 235 (246)
T 3of1_A 198 EVAL--------LNDLP-RQATVTATKRTKVATLGKSGFQRLLGPAV 235 (246)
T ss_dssp HHHH--------HHTCB-CSSEEEESSCEEEEEEEHHHHHHHCTTHH
T ss_pred HHHH--------hCCCC-cccEEEECCCEEEEEEeHHHHHHHhccHH
Confidence 9976 46778 89999999999999999999999999999
No 42
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.47 E-value=1.2e-12 Score=121.52 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----hHHHHHHHHHHHHH
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQV------SLQV----VMARRKKIQLRSRD 412 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~------il~~----~~~~~~~~~~~~~~ 412 (667)
.|..|+||+++|+||+||||+.|.+..+++++++.+++|+.+++++++.+++ +... .+....+..+++++
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~ 131 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEA 131 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999987 3332 34556667778999
Q ss_pred HHHHHHHcCCCHHHHHH
Q 005964 413 MEWWMRRRQLTSGLKWR 429 (667)
Q Consensus 413 v~~~m~~~~lp~~L~~r 429 (667)
++++++.++.|++|+.|
T Consensus 132 i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 132 IEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHTTC------
T ss_pred HHHHHHhcCCCcCCCCC
Confidence 99999999999999875
No 43
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.47 E-value=5.7e-14 Score=128.52 Aligned_cols=93 Identities=11% Similarity=0.167 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCC
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKIQLRSRDMEWWMRRRQL 422 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~~l 422 (667)
.|..|+||+++|+|||||||++|.+..|++++++++++|++++|+++|.+++.+......+.+.++..+..+...+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 37899999999999999999999999999999999999999999999999998866544433333332323333445566
Q ss_pred CHHHHHHHHHHHH
Q 005964 423 TSGLKWRVRHFER 435 (667)
Q Consensus 423 p~~L~~rV~~y~~ 435 (667)
+++....++++.+
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 6666666666654
No 44
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1e-13 Score=139.12 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=104.3
Q ss_pred HHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccc
Q 005964 466 LDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDEL 545 (667)
Q Consensus 466 ~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~ 545 (667)
.++++++|+|++++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++. +|++ +..+.+|++||+.+
T Consensus 6 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~---~~~~-~~~~~~g~~fGe~~ 81 (246)
T 3of1_A 6 EKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV---NDNK-VNSSGPGSSFGELA 81 (246)
T ss_dssp HHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES---TTSC-CEEECTTCEECHHH
T ss_pred HHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE---CCEE-EEecCCCCeeehhH
Confidence 5788999999999999999999999999999999999999999999999999999974 5554 57899999999986
Q ss_pred hhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHH
Q 005964 546 LSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLAD 594 (667)
Q Consensus 546 Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~ 594 (667)
++ .+.| +.++++|.++|+++.|++++|.+++.++| ....
T Consensus 82 l~--------~~~~-~~~tv~a~~~~~~~~i~~~~~~~~~~~~~-~~~~ 120 (246)
T 3of1_A 82 LM--------YNSP-RAATVVATSDCLLWALDRLTFRKILLGSS-FKKR 120 (246)
T ss_dssp HH--------HTCC-CSSEEEESSCEEEEEEEHHHHHHTTTTTT-SHHH
T ss_pred Hh--------cCCC-CCcEEEECCCeEEEEEEhHHHHHHHHHhH-HHHH
Confidence 63 5677 89999999999999999999999999999 4443
No 45
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.46 E-value=2.1e-13 Score=148.64 Aligned_cols=122 Identities=20% Similarity=0.247 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcC
Q 005964 458 RDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLG 536 (667)
Q Consensus 458 ~~i~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~ 536 (667)
.+-......++++++++|++++++.+..|+..++.+.|.+|++|+++||.++.+|||.+|.|+++. ..+|++. +..+.
T Consensus 136 s~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l~ 214 (416)
T 3tnp_B 136 TDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYD 214 (416)
T ss_dssp CHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEEE
T ss_pred CHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEec
Confidence 334455567899999999999999999999999999999999999999999999999999999987 5677654 88999
Q ss_pred CCCeEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcH
Q 005964 537 PGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 537 ~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p 589 (667)
+|++||+.++ +.+.| +.++++|.++|+++.|++++|..++.++|
T Consensus 215 ~G~~fGe~al--------l~~~p-r~atv~A~~d~~l~~i~r~~f~~ll~~~~ 258 (416)
T 3tnp_B 215 NRGSFGELAL--------MYNTP-KAATITATSPGALWGLDRVTFRRIIVKNN 258 (416)
T ss_dssp SCCEECGGGG--------TSCCC-CSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred CCCEEeeHHH--------hcCCC-cccEEEEccCeEEEEEeehhhhhhhhcch
Confidence 9999999966 46778 89999999999999999999999999999
No 46
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.44 E-value=5.3e-13 Score=143.79 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=108.8
Q ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCe
Q 005964 461 KRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGF 540 (667)
Q Consensus 461 ~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~ 540 (667)
......++++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++. +|+. +..+.+|++
T Consensus 124 ~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~---~~~~-v~~l~~G~~ 199 (381)
T 4din_B 124 TMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV---NGEW-VTNISEGGS 199 (381)
T ss_dssp HHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE---TTEE-EEEEESSCC
T ss_pred HHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE---CCeE-eeeCCCCCE
Confidence 334557889999999999999999999999999999999999999999999999999999985 5654 678999999
Q ss_pred EeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHH
Q 005964 541 LGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADER 596 (667)
Q Consensus 541 fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~ 596 (667)
||+.++ +.+.| +.++++|.++|+++.|++++|..++.++| ......
T Consensus 200 fGe~al--------l~~~~-r~atv~A~~~~~l~~i~~~~f~~ll~~~~-~~~~~~ 245 (381)
T 4din_B 200 FGELAL--------IYGTP-RAATVKAKTDLKLWGIDRDSYRRILMGST-LRKRKM 245 (381)
T ss_dssp BCGGGG--------TSCCB-CSSEEEESSSCEEEEEEHHHHHHHHHHHH-HHHHHH
T ss_pred EEchHH--------hcCCC-cceEEEECCCEEEEEEchHHHHHhhhhhh-HHHHHH
Confidence 999866 46778 89999999999999999999999999999 554433
No 47
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.43 E-value=5.1e-13 Score=147.71 Aligned_cols=129 Identities=20% Similarity=0.250 Sum_probs=118.5
Q ss_pred hCChhHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCe-
Q 005964 451 DLPQGLRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGK- 529 (667)
Q Consensus 451 ~Lp~~Lr~~i~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~- 529 (667)
..|+..|.+.......+.++++++|.+++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++..+.+|+
T Consensus 26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~ 105 (469)
T 1o7f_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ 105 (469)
T ss_dssp TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGG
T ss_pred cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCC
Confidence 4577788888888888999999999999999999999999999999999999999999999999999999998877874
Q ss_pred --EEEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcH
Q 005964 530 --LATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 530 --~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p 589 (667)
..+..+.+|++||+.+ +.+.| +.++++|.++|+++.|++++|.++++++|
T Consensus 106 ~~~~~~~~~~G~~fGe~~---------l~~~~-~~~tv~A~~~~~l~~i~~~~~~~l~~~~p 157 (469)
T 1o7f_A 106 DAVTICTLGIGTAFGESI---------LDNTP-RHATIVTRESSELLRIEQEDFKALWEKYR 157 (469)
T ss_dssp GCEEEEEECTTCEECGGG---------GGTCB-CSSEEEESSSEEEEEEEHHHHHHHHHHHG
T ss_pred cceEEEEccCCCCcchhh---------hCCCC-ccceEEEccceeEEEEcHHHHHHHHHhCH
Confidence 4589999999999984 36677 89999999999999999999999999999
No 48
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.43 E-value=1.1e-12 Score=132.47 Aligned_cols=121 Identities=19% Similarity=0.180 Sum_probs=105.5
Q ss_pred hcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhh
Q 005964 470 KKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSW 548 (667)
Q Consensus 470 ~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~ 548 (667)
.++..+..+++++++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+.+|++. +..+.+|++||+ .+
T Consensus 12 ~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~-~l-- 88 (250)
T 3e6c_C 12 GAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK-LY-- 88 (250)
T ss_dssp CCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC-CS--
T ss_pred hhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee-ec--
Confidence 34344488999999999999999999999999999999999999999999999988899875 889999999999 33
Q ss_pred ccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHHH
Q 005964 549 CLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITRY 603 (667)
Q Consensus 549 ~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r~ 603 (667)
.+. +.++++|+++|+++.+++++|.+++.++| .+....++...+.
T Consensus 89 -------~~~--~~~~~~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~l~~~l~~~ 133 (250)
T 3e6c_C 89 -------PTG--NNIYATAMEPTRTCWFSEKSLRTVFRTDE-DMIFEIFKNYLTK 133 (250)
T ss_dssp -------CCS--CCEEEEESSSEEEEEECHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred -------CCC--CceEEEEcccEEEEEEcHHHHHHHHHHCH-HHHHHHHHHHHHH
Confidence 333 68999999999999999999999999999 7776666555443
No 49
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.41 E-value=4.4e-13 Score=146.08 Aligned_cols=115 Identities=14% Similarity=0.270 Sum_probs=102.0
Q ss_pred HHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCC------CeE-EEEEcCCC
Q 005964 466 LDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSK------GKL-ATSVLGPG 538 (667)
Q Consensus 466 ~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~------g~~-~i~~l~~G 538 (667)
..+++++++|..++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++....+ |++ .+..+.+|
T Consensus 266 ~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G 345 (416)
T 3tnp_B 266 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRG 345 (416)
T ss_dssp SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTT
T ss_pred HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCC
Confidence 45678889999999999999999999999999999999999999999999999999876544 655 48899999
Q ss_pred CeEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcH
Q 005964 539 GFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 539 ~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p 589 (667)
++||+.++ +.+.| +.++++|.++|+++.|++++|.+++..+|
T Consensus 346 ~~fGE~al--------l~~~~-r~~tv~A~~~~~ll~I~~~~f~~ll~~~p 387 (416)
T 3tnp_B 346 QYFGELAL--------VTNKP-RAASAHAIGTVKCLAMDVQAFERLLGPCM 387 (416)
T ss_dssp CEESGGGG--------TCCSC-CSSEEEEEEEEEEEEEEHHHHHHHHCCHH
T ss_pred CEecHHHH--------hCCCC-ceeEEEEcCCeEEEEEEHHHHHHHhcchH
Confidence 99999866 57788 89999999999999999999999999999
No 50
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.41 E-value=1.2e-12 Score=117.19 Aligned_cols=59 Identities=10% Similarity=0.180 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMA 401 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~ 401 (667)
.|..|+||++.|+||+||||++|.+..+++++++.+++|+.++++.+|.+++.+.+...
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999876544
No 51
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.39 E-value=5.9e-12 Score=126.20 Aligned_cols=116 Identities=15% Similarity=0.175 Sum_probs=97.6
Q ss_pred CCCHHHHHHHhc--cceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhhccCCC
Q 005964 477 CLDDLVLDNICD--RVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSWCLRRP 553 (667)
Q Consensus 477 ~ls~~~l~~i~~--~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~~l~~s 553 (667)
+++++.+..+.. .++.+.|++|++|+++||+++.+|||.+|.|+++..+.+|++. +.++ +|++||+.++
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~------- 74 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGF------- 74 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBC-------
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhh-------
Confidence 578888888884 5899999999999999999999999999999999888899875 6777 9999999854
Q ss_pred CCCCCCC-cceEEEEe-eeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHH
Q 005964 554 FKDRLPA-SPATFTCM-ESVEAYGLNASDLRYIADHFRYKLADERLKRITR 602 (667)
Q Consensus 554 f~~~~p~-~~~tv~A~-~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r 602 (667)
+.+.+. +..+++|+ ++|+++.|++++|.++++++| .+....++...+
T Consensus 75 -~~~~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~ 123 (238)
T 2bgc_A 75 -IDTETSVGYYNLEVISEQATAYVIKINELKELLSKNL-THFFYVFQTLQK 123 (238)
T ss_dssp -TTTCCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHH
T ss_pred -hcCCCcCcceeEEEEEcceEEEEEeHHHHHHHHHHCH-HHHHHHHHHHHH
Confidence 455551 25778888 599999999999999999999 777766655544
No 52
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.38 E-value=4.3e-12 Score=127.65 Aligned_cols=114 Identities=16% Similarity=0.214 Sum_probs=98.9
Q ss_pred HHHHHHHhccce---eeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhhccCCCCC
Q 005964 480 DLVLDNICDRVK---ALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSWCLRRPFK 555 (667)
Q Consensus 480 ~~~l~~i~~~l~---~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~~l~~sf~ 555 (667)
+++++.++.... .+.|++|++|+++||+++.+|||.+|.|+++..+.+|++. +.++.+|++||+.++ +
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~--------~ 101 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSL--------L 101 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHH--------H
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHH--------h
Confidence 677788888888 9999999999999999999999999999999988899875 889999999999855 4
Q ss_pred CCCCC-cceEEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHH
Q 005964 556 DRLPA-SPATFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITR 602 (667)
Q Consensus 556 ~~~p~-~~~tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r 602 (667)
.+.|. +.++++|+++|+++.+++++|.++++++| .+....++...+
T Consensus 102 ~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~l~~~l~~ 148 (243)
T 3la7_A 102 TGNKSDRFYHAVAFTPVELLSAPIEQVEQALKENP-ELSMLMLRGLSS 148 (243)
T ss_dssp SSCCSBCCEEEEESSSEEEEEEEHHHHHHHHTTCH-HHHHHHHHHHHH
T ss_pred CCCCCcceEEEEEccceEEEEEcHHHHHHHHHHCH-HHHHHHHHHHHH
Confidence 55552 45899999999999999999999999999 777666554443
No 53
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.37 E-value=1.7e-12 Score=143.43 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=104.6
Q ss_pred HHHHHHhhcCCCCCCCCHHHHHHHhcccee-eEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeE
Q 005964 463 YLCLDLVKKVPLFHCLDDLVLDNICDRVKA-LIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFL 541 (667)
Q Consensus 463 ~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~-~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 541 (667)
....+.++++|+|.+++++.+..++..++. +.|.+|++|+++||.++.+|||.+|.|+++. +|+..+..+.+|++|
T Consensus 333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~~~~~~~~l~~G~~f 409 (469)
T 1o7f_A 333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGKGVVCTLHEGDDF 409 (469)
T ss_dssp HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE---TTTEEEEEEETTCEE
T ss_pred HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEE---cCCeeEEEecCCCEE
Confidence 344578999999999999999999999985 5999999999999999999999999999986 344468899999999
Q ss_pred eccchhhccCCCCCCCCCCcceEEEEee-eceEEeeCHHHHHHHHHHcHHHHH
Q 005964 542 GDELLSWCLRRPFKDRLPASPATFTCME-SVEAYGLNASDLRYIADHFRYKLA 593 (667)
Q Consensus 542 Ge~~Ll~~l~~sf~~~~p~~~~tv~A~~-~~~l~~L~~~df~~l~~~~p~~~~ 593 (667)
|+.++ +.+.| +.++++|++ +|+++.|++++|.+++.++| .+.
T Consensus 410 Ge~~l--------l~~~~-~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p-~~~ 452 (469)
T 1o7f_A 410 GKLAL--------VNDAP-RAASIVLREDNCHFLRVDKEDFNRILRDVE-ANT 452 (469)
T ss_dssp CGGGG--------TCCSC-CSSEEEESSSSEEEEEEEHHHHHHHHHHTT-CC-
T ss_pred EEehh--------hcCCC-ceEEEEEecCCEEEEEEcHHHHHHHHHHCh-HHH
Confidence 99865 57778 899999999 69999999999999999999 443
No 54
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.32 E-value=1.1e-11 Score=113.90 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHcC
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMAR-RKKIQLRSRDMEWWMRRRQ 421 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~-~~~~~~~~~~v~~~m~~~~ 421 (667)
.|..|+||+++|+|||||||+.|.+..+++++++.+++|+.+++++++.+++.+.....+ ..++..+.+.....+..++
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRT 119 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999977554333 3344344443333333333
Q ss_pred CCHHHHHHHHH
Q 005964 422 LTSGLKWRVRH 432 (667)
Q Consensus 422 lp~~L~~rV~~ 432 (667)
+ +++.+++.+
T Consensus 120 ~-~~l~~~l~~ 129 (139)
T 3eff_K 120 T-RALHERFDR 129 (139)
T ss_dssp H-HHHHHHHHH
T ss_pred H-HHHHHHHHH
Confidence 2 444444444
No 55
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.26 E-value=1.8e-11 Score=147.77 Aligned_cols=132 Identities=20% Similarity=0.254 Sum_probs=110.7
Q ss_pred HHhhCChhHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCC
Q 005964 448 WIEDLPQGLRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSK 527 (667)
Q Consensus 448 il~~Lp~~Lr~~i~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~ 527 (667)
.|+.-| .-|.+=...+-.+.|+++++|+++++..+.+|+..|+.+.|.+|++|+++||.++.+|+|.+|.|.++..+.+
T Consensus 24 ~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~ 102 (999)
T 4f7z_A 24 CLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102 (999)
T ss_dssp HHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS
T ss_pred HhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC
Confidence 344433 3443333344457899999999999999999999999999999999999999999999999999999875433
Q ss_pred C---eEEEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHHHHHHHHHcHH
Q 005964 528 G---KLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASDLRYIADHFRY 590 (667)
Q Consensus 528 g---~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~df~~l~~~~p~ 590 (667)
+ ...+..+.+|+.||| +++ .+.| |+++++|.++|++++|++++|+.++.++|+
T Consensus 103 ~~~~~~~v~~l~~G~sFGE-all--------~n~p-RtaTv~a~~~s~l~~l~r~~F~~i~~~~~e 158 (999)
T 4f7z_A 103 SHQDAVTICTLGIGTAFGE-SIL--------DNTP-RHATIVTRESSELLRIEQEDFKALWEKYRQ 158 (999)
T ss_dssp CTTSCEEEEEEETTCEECG-GGG--------GTCC-CSSEEEESSSEEEEEEEHHHHHHHHHHHHH
T ss_pred CCCCceeEEEecCCcchhh-hhc--------cCCC-cceEEEeccceEEEEEEHHHHHHHHHhChH
Confidence 2 234789999999999 553 5677 899999999999999999999999999983
No 56
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.26 E-value=1.1e-11 Score=142.83 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=111.7
Q ss_pred HHHHhhCChhHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHhccce-eeEecCCcEEEccCCCcCeEEEEEeeEEEEEEE
Q 005964 446 LDWIEDLPQGLRRDIKRYLCLDLVKKVPLFHCLDDLVLDNICDRVK-ALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQS 524 (667)
Q Consensus 446 ~~il~~Lp~~Lr~~i~~~l~~~~l~~v~lF~~ls~~~l~~i~~~l~-~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~ 524 (667)
..++.. |+..|.+-......+.++++++|.+++++.+..++..++ .+.|++|++|+++||.++.+|||.+|.|+++..
T Consensus 12 r~iL~k-~p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~ 90 (694)
T 3cf6_E 12 RMILRK-PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY 90 (694)
T ss_dssp HHHHHS-CGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET
T ss_pred HHHHcC-ChhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe
Confidence 345543 444455444455578899999999999999999999998 789999999999999999999999999999863
Q ss_pred cCCCeEEEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEee-eceEEeeCHHHHHHHHHHcH
Q 005964 525 LSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCME-SVEAYGLNASDLRYIADHFR 589 (667)
Q Consensus 525 ~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~-~~~l~~L~~~df~~l~~~~p 589 (667)
|+..+..+.+|++||+.++ +.+.| +.++++|++ +|+++.|++++|.++++++|
T Consensus 91 ---g~~il~~l~~Gd~fGe~al--------~~~~~-~~~tv~A~edd~~ll~I~~~~f~~ll~~~p 144 (694)
T 3cf6_E 91 ---GKGVVCTLHEGDDFGKLAL--------VNDAP-RAASIVLREDNCHFLRVDKEDFNRILRDVE 144 (694)
T ss_dssp ---TTEEEEEEETTCEECHHHH--------HHTCB-CSSEEEECSSSEEEEEEEHHHHHHHTTTTC
T ss_pred ---CCEEEEEeCCCCEeehHHH--------hCCCC-ceEEEEEeeCceEEEEEeHHHHHHHHHHCH
Confidence 4456889999999999865 46677 899999999 59999999999999999988
No 57
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.18 E-value=8.4e-11 Score=113.88 Aligned_cols=93 Identities=17% Similarity=0.284 Sum_probs=80.6
Q ss_pred eEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEeeec
Q 005964 493 LIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESV 571 (667)
Q Consensus 493 ~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~ 571 (667)
+.|++|++|+++||+++.+|||.+|.|+++..+.+|++. +..+.+|++||+ ++ +.+.| +.++++|+++|
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~--------~~~~~-~~~~~~A~~~~ 71 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EA--------LEGKA-YRYTAEAMTEA 71 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GG--------GTCSB-CSSEEEESSSE
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hh--------hCCCC-ceeEEEECCcE
Confidence 579999999999999999999999999999888888865 889999999999 77 36677 89999999999
Q ss_pred eEEeeCHHHHHHHHHHcHHHHHHHHHHHHHH
Q 005964 572 EAYGLNASDLRYIADHFRYKLADERLKRITR 602 (667)
Q Consensus 572 ~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r 602 (667)
+++.+++++|. | .+....++...+
T Consensus 72 ~v~~i~~~~~~------p-~~~~~~~~~l~~ 95 (195)
T 3b02_A 72 VVQGLEPRAMD------H-EALHRVARNLAR 95 (195)
T ss_dssp EEEEECGGGCC------H-HHHHHHHHHHHH
T ss_pred EEEEEcHHHcC------H-HHHHHHHHHHHH
Confidence 99999999998 7 566555544433
No 58
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.18 E-value=9.5e-11 Score=141.52 Aligned_cols=113 Identities=14% Similarity=0.163 Sum_probs=100.2
Q ss_pred HHHHHhhcCCCCCCCCHHHHHHHhccceeeEe-cCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 464 LCLDLVKKVPLFHCLDDLVLDNICDRVKALIY-SKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 464 l~~~~l~~v~lF~~ls~~~l~~i~~~l~~~~~-~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
...+.+.++|.|.+++....+.++..+....+ +.|++|+++||.++.+|||.+|.|+++. +++..+..+++||+||
T Consensus 334 ~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~---~~~~~v~~L~~Gd~FG 410 (999)
T 4f7z_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGKGVVCTLHEGDDFG 410 (999)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE---TTTEEEEEEETTCEEC
T ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE---cCCcceEEecCCCccc
Confidence 34577899999999999999999999997554 7799999999999999999999999985 3444578899999999
Q ss_pred ccchhhccCCCCCCCCCCcceEEEEeee-ceEEeeCHHHHHHHHHHc
Q 005964 543 DELLSWCLRRPFKDRLPASPATFTCMES-VEAYGLNASDLRYIADHF 588 (667)
Q Consensus 543 e~~Ll~~l~~sf~~~~p~~~~tv~A~~~-~~l~~L~~~df~~l~~~~ 588 (667)
|.+| +++.| |.+|++|.++ |++++++++||.+++.+-
T Consensus 411 ElAL--------L~~~P-R~aTV~a~~d~c~fl~i~k~df~~il~~~ 448 (999)
T 4f7z_A 411 KLAL--------VNDAP-RAASIVLREDNCHFLRVDKEDGNRILRDV 448 (999)
T ss_dssp GGGG--------TCSCB-CSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred chhh--------ccCCC-eeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence 9977 58899 8999999985 999999999999999763
No 59
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.10 E-value=6.9e-10 Score=97.91 Aligned_cols=59 Identities=14% Similarity=0.303 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMA 401 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~ 401 (667)
.|..|+||+++|+||+||||+.|.+..+++++++.+++|+.++++.++.+++.++....
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~ 107 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 107 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999999999998855443
No 60
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.08 E-value=2.5e-10 Score=111.06 Aligned_cols=98 Identities=14% Similarity=0.210 Sum_probs=80.6
Q ss_pred hccceeeEecCCcEEEccCCCc--CeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEeccchhhccCCCCCCCCCCcce
Q 005964 487 CDRVKALIYSKDEKIIREGNPV--SRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGDELLSWCLRRPFKDRLPASPA 563 (667)
Q Consensus 487 ~~~l~~~~~~~ge~Ii~~Gd~~--~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~ 563 (667)
...++.+.|++|++|+++||++ +.+|||.+|.|+++..+.+|++. +..+.+|++||+ +++ .+.| +..
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l--------~~~~-~~~ 71 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EAL--------FGQE-RIY 71 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHH--------HTCC-BCS
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhc--------CCCC-cce
Confidence 4567889999999999999999 99999999999999888889875 889999999999 553 4566 789
Q ss_pred EEEEeeeceEEeeCHHHHHHHHHHcHHHHHHHHHHHHHH
Q 005964 564 TFTCMESVEAYGLNASDLRYIADHFRYKLADERLKRITR 602 (667)
Q Consensus 564 tv~A~~~~~l~~L~~~df~~l~~~~p~~~~~~~l~~~~r 602 (667)
+++|+++|+++.+ +++|. | .+....++...+
T Consensus 72 ~~~A~~~~~v~~i-~~~~~------p-~~~~~~~~~l~~ 102 (202)
T 2zcw_A 72 FAEAATDVRLEPL-PENPD------P-ELLKDLAQHLSQ 102 (202)
T ss_dssp EEEESSCEEEEEC-CSSCC------H-HHHHHHHHHHHH
T ss_pred EEEEcccEEEEEE-hHhcC------H-HHHHHHHHHHHH
Confidence 9999999999999 98886 6 565555544443
No 61
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.06 E-value=4.8e-11 Score=103.50 Aligned_cols=59 Identities=10% Similarity=0.169 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMA 401 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~ 401 (667)
.|..|+||++.|+||+||||+.|.+..+++++++.+++|+.++++++|.+.+.+.+...
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46689999999999999999999999999999999999999999999999998866543
No 62
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.03 E-value=4.5e-10 Score=115.89 Aligned_cols=59 Identities=10% Similarity=-0.005 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHhhccCcc-ccC-CCchh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 005964 342 DTILYPIFWGLLNLSSFGNE-LEP-TSNVL----EVMFSICIVLCGLTLFTLLVGNIQVSLQVVM 400 (667)
Q Consensus 342 ~~Yl~slYwa~~TlttvGyg-d~~-~~n~~----E~i~~i~i~i~G~~~fa~iig~i~~il~~~~ 400 (667)
..+..|+||++.|+||+||| |+. |.+.. -..+.+++++.|.++.+..+|.+.+-.+...
T Consensus 179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999 873 44322 2889999999999999999999988765543
No 63
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.03 E-value=1.3e-09 Score=93.19 Aligned_cols=57 Identities=14% Similarity=0.314 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVV 399 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~ 399 (667)
.|..|+||+++|+||+||||+.|.+..+++++++.+++|..+++++++.+++.++..
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 88 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 367899999999999999999999999999999999999999999999999987543
No 64
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.93 E-value=5.7e-09 Score=86.29 Aligned_cols=53 Identities=15% Similarity=0.379 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005964 344 ILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSL 396 (667)
Q Consensus 344 Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il 396 (667)
|..|+||+++|+||+||||+.|.+..+++++++.+++|..++++.++.+++.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66899999999999999999999999999999999999999999999999875
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.85 E-value=1.9e-10 Score=108.74 Aligned_cols=64 Identities=11% Similarity=0.239 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVVMARRKKI 406 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~~~~~~~~ 406 (667)
.|..|+||+++|+|||||||+.|.+..+++++++.+++|++++++++|.+++.+.....++.+.
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~~ 130 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQ 130 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHHH
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999999999999999999999999999999999999887665544433
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.67 E-value=5.6e-08 Score=100.27 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSL 396 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il 396 (667)
.|..|+||++.|+||+||||+.|.+...++++++.+++|++++|+++|.+.+.+
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~ 135 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 135 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477999999999999999999999999999999999999999999999877766
No 67
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.59 E-value=5.7e-08 Score=101.32 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVV 399 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~ 399 (667)
.|..|+||++.|+||+||||+.|.+..+++++++.+++|++++|+++|.+.+.+...
T Consensus 96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999998877543
No 68
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.58 E-value=1.3e-07 Score=97.16 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVV 399 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~ 399 (667)
.|..|+||+++|+|||||||+.|.+...++++++.+++|+.+++++++.+++.+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999999999988654
No 69
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.50 E-value=6.1e-07 Score=93.20 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQV 398 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~ 398 (667)
.|..|+||++.|+|||||||+.|.+...++++++.+++|++++|+++|.+.+.+..
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~ 133 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ 133 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999887654
No 70
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.36 E-value=1.8e-06 Score=97.47 Aligned_cols=53 Identities=9% Similarity=0.284 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 005964 344 ILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGN-IQVSL 396 (667)
Q Consensus 344 Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~-i~~il 396 (667)
|+.|+||+++|+||+||||++|.+..+++++++++++|++++++.++. +.+.+
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999998 55544
No 71
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.36 E-value=2.6e-06 Score=88.63 Aligned_cols=55 Identities=9% Similarity=0.198 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhccCccccCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005964 344 ILYPIFWGLLNLSSFGNELEPTS--NVLEVMFSICIVLCGLTLFTLLVGNIQVSLQV 398 (667)
Q Consensus 344 Yl~slYwa~~TlttvGygd~~~~--n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~ 398 (667)
+..++||++.|+||+||||+.|+ +...++++++.+++|+++.|+++|.+.+-+..
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~sr 148 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQ 148 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44799999999999999999886 46788999999999999999999988766543
No 72
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.24 E-value=4.3e-07 Score=93.39 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhhccCccccCCCchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNVLEV------MFSICIVLCGLTLFTLLVGNIQVSLQVVMA 401 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~~E~------i~~i~i~i~G~~~fa~iig~i~~il~~~~~ 401 (667)
.|+.|+||+++|+|||||||+.|.+..++ +++++.+++|+.+++++++.+++.+.....
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~ 288 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSR 288 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37799999999999999999998877776 599999999999999999999998766543
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.20 E-value=2.3e-06 Score=86.59 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQ 397 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~ 397 (667)
.|..|+||+++|+||+||||+.|.+...++++++.+++|+.+++++++.+...+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999987653
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.12 E-value=2.1e-06 Score=86.96 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhhccCccccCCCchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005964 344 ILYPIFWGLLNLSSFGNELEPTSNVL-------EVMFSICIVLCGLTLFTLLVGNIQVSLQV 398 (667)
Q Consensus 344 Yl~slYwa~~TlttvGygd~~~~n~~-------E~i~~i~i~i~G~~~fa~iig~i~~il~~ 398 (667)
|+.|+||++.|+|||||||+.|.+.. -++++++.+++|+.+++++++.+.+++..
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999887764 49999999999999999999999987654
No 75
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.07 E-value=1.9e-05 Score=82.21 Aligned_cols=55 Identities=11% Similarity=0.294 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhccCccccCCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTS--NVLEVMFSICIVLCGLTLFTLLVGNIQVSLQ 397 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~--n~~E~i~~i~i~i~G~~~fa~iig~i~~il~ 397 (667)
.+..++||++.|+||+||||+.|+ +...++++.+.+++|+++.|.++|.+.+=+.
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~s 150 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMA 150 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999998753 6789999999999999999999987766553
No 76
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.99 E-value=0.00011 Score=72.66 Aligned_cols=77 Identities=5% Similarity=0.023 Sum_probs=48.8
Q ss_pred HhHHHHHHHHHHHHHhhhhhhhhhhheecCCCCCCCcceecCcchhHHHHHHHHHHHHHHHHHHHHHhceeEEcCCcccc
Q 005964 76 QKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWHLWLQFRLAYVSRESLVV 155 (667)
Q Consensus 76 ~~W~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~if~~Di~l~f~t~y~~~~s~~~ 155 (667)
..++.++.++++.+++..-+. . . + .+.+....+..+|.++-++|.+|+++++...
T Consensus 12 ~~f~~~i~~~I~ln~i~l~~~--~--~----~--------~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~--------- 66 (229)
T 4dxw_A 12 RIFQFTVVSIIILNAVLIGAT--T--Y----E--------LDPLFLETIHLLDYGITIFFVIEILIRFIGE--------- 66 (229)
T ss_dssp HHHHHHHHHHHHHHHHSTTTC--C--S----S--------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred chHHHHHHHHHHHHHHHHHHc--c--C----C--------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------
Confidence 367888888888888755431 0 0 1 1223345677899999999999999997542
Q ss_pred cCCeEeecHHHHHHhhhcCCcchHHHHHhhcch
Q 005964 156 GCGKLVWDARAIARHYVISPTKFWLDVFVILPI 188 (667)
Q Consensus 156 ~~g~~V~d~~~Ia~~Ylks~~~F~~Dlls~lP~ 188 (667)
| -.++|+|+ +|-++|++.++|.
T Consensus 67 --~--------~~~~y~~~-~wni~D~~~v~~~ 88 (229)
T 4dxw_A 67 --K--------QKADFFKS-GWNIFDTVIVAIS 88 (229)
T ss_dssp ------------------C-HHHHHHHHHHHHT
T ss_pred --C--------chhHHhcC-CcHHHHHHHHHHH
Confidence 2 14689999 5999999888763
No 77
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=97.90 E-value=8e-07 Score=93.58 Aligned_cols=55 Identities=16% Similarity=0.379 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005964 345 LYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQVV 399 (667)
Q Consensus 345 l~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~~ 399 (667)
..|+||+++|+||+||||+.|.+..+++++++.+++|+++++++++.+.+.+...
T Consensus 47 ~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 47 TVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp STTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999998889999999999999999999999999877543
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=96.64 E-value=0.0056 Score=55.92 Aligned_cols=78 Identities=9% Similarity=0.085 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhheecCCCCCCCcceecCcchhHHHHHHHHHHHHHHHHHHHHHhceeEEcCCccccc
Q 005964 77 KLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWHLWLQFRLAYVSRESLVVG 156 (667)
Q Consensus 77 ~W~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~if~~Di~l~f~t~y~~~~s~~~~ 156 (667)
.|+.++.++.+.+++++-+. ... . .+......+..+|.++-++|.+|.++++..+ +
T Consensus 22 ~f~~~i~~lil~sv~~v~~e---t~~----~--------i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a---~------ 77 (147)
T 2kyh_A 22 LVELGVSYAALLSVIVVVVE---YTM----Q--------LSGEYLVRLYLVDLILVIILWADYAYRAYKS---G------ 77 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHC----C--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T------
T ss_pred hHHHHHHHHHHHHHHHHHHH---HhH----h--------hchhHHHHHHHHHHHHHHHHHHHHHHHHHHC---C------
Confidence 46777777777777655431 111 1 0112234577899999999999999999765 2
Q ss_pred CCeEeecHHHHHHhhhcCCcchHHHHHhhcchhhh
Q 005964 157 CGKLVWDARAIARHYVISPTKFWLDVFVILPIPQA 191 (667)
Q Consensus 157 ~g~~V~d~~~Ia~~Ylks~~~F~~Dlls~lP~~~i 191 (667)
| .++|+|+ =++|+++++|+...
T Consensus 78 ------~----k~~f~~~---~iiDllailP~~~~ 99 (147)
T 2kyh_A 78 ------D----PAGYVKK---TLYEIPALVPAGLL 99 (147)
T ss_dssp ------C----HHHHHHH---STTTHHHHCCHHHH
T ss_pred ------c----HHHHHHH---HHHHHHHHHHHHHH
Confidence 1 3578885 38999999998753
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=96.14 E-value=0.013 Score=52.33 Aligned_cols=78 Identities=9% Similarity=-0.003 Sum_probs=54.1
Q ss_pred HhHHHHHHHHHHHHHhhhhhhhhhhheecCCCCCCCcceecCcchhHHHHHHHHHHHHHHHHHHHHHhceeEEcCCcccc
Q 005964 76 QKLNRVLLLARGIALAVDPLFFYVFSLYVAPGRGGAPCVYMDAELALIVTVIRTCVDVVHLWHLWLQFRLAYVSRESLVV 155 (667)
Q Consensus 76 ~~W~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~if~~Di~l~f~t~y~~~~s~~~ 155 (667)
+.++.+++++++.+++..-+. .. |.. +.+....+..+|.++-++|.+|.++++..+ +
T Consensus 6 ~~f~~~i~~lIlls~~~~~~e----t~---~~~--------~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~---~----- 62 (132)
T 1ors_C 6 PLVELGVSYAALLSVIVVVVE----YT---MQL--------SGEYLVRLYLVDLILVIILWADYAYRAYKS---G----- 62 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HH---SCC--------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHT---T-----
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hc---hhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-----
Confidence 457888888777777655431 11 011 112234677899999999999999998754 1
Q ss_pred cCCeEeecHHHHHHhhhcCCcchHHHHHhhcchhh
Q 005964 156 GCGKLVWDARAIARHYVISPTKFWLDVFVILPIPQ 190 (667)
Q Consensus 156 ~~g~~V~d~~~Ia~~Ylks~~~F~~Dlls~lP~~~ 190 (667)
+ .++|++ |=++|+++++|+..
T Consensus 63 --~---------~~~y~~---~niiDllailp~~~ 83 (132)
T 1ors_C 63 --D---------PAGYVK---KTLYEIPALVPAGL 83 (132)
T ss_dssp --S---------TTTTTT---TCGGGTGGGSCHHH
T ss_pred --C---------HHHHHH---HHHHHHHHHHHHHH
Confidence 1 357887 56899999999765
No 80
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=71.99 E-value=3.5 Score=25.66 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHh
Q 005964 607 NWRTWAAVNIQFAWRRYRIRI 627 (667)
Q Consensus 607 ~~~~~~~~~~q~~~~~~~~r~ 627 (667)
+-+.+++..||++|+++..|.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 457789999999999998764
No 81
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=71.65 E-value=3.5 Score=26.54 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhh
Q 005964 607 NWRTWAAVNIQFAWRRYRIRIR 628 (667)
Q Consensus 607 ~~~~~~~~~~q~~~~~~~~r~~ 628 (667)
+-+.++++.||++|++|..|..
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999997654
No 82
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=62.96 E-value=48 Score=27.35 Aligned_cols=65 Identities=9% Similarity=0.068 Sum_probs=41.3
Q ss_pred eEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEeeece
Q 005964 493 LIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVE 572 (667)
Q Consensus 493 ~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~ 572 (667)
..+.+|..+-.-.....++++|++|.+.+.. +|+. ..+.+||.+=-- .+.| ..+.+.+++.
T Consensus 43 ~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i---~~~~--~~l~~Gd~i~i~-----------~~~~---H~~~~~~~~~ 103 (114)
T 2ozj_A 43 FSFADGESVSEEEYFGDTLYLILQGEAVITF---DDQK--IDLVPEDVLMVP-----------AHKI---HAIAGKGRFK 103 (114)
T ss_dssp EEEETTSSCCCBCCSSCEEEEEEEEEEEEEE---TTEE--EEECTTCEEEEC-----------TTCC---BEEEEEEEEE
T ss_pred EEECCCCccccEECCCCeEEEEEeCEEEEEE---CCEE--EEecCCCEEEEC-----------CCCc---EEEEeCCCcE
Confidence 3456676554444456789999999999864 4543 478999977433 3344 3445556666
Q ss_pred EEee
Q 005964 573 AYGL 576 (667)
Q Consensus 573 l~~L 576 (667)
++.+
T Consensus 104 ~~~i 107 (114)
T 2ozj_A 104 MLQI 107 (114)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 83
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=62.65 E-value=40 Score=28.17 Aligned_cols=66 Identities=9% Similarity=0.115 Sum_probs=44.5
Q ss_pred ceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEee
Q 005964 490 VKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCME 569 (667)
Q Consensus 490 l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~ 569 (667)
+....+.||..+-.---...++++|++|.+++.. +|+. ..+.+||.+--- .+. ...+++.+
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~--~~l~~Gd~i~ip-----------~~~---~H~~~~~~ 98 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV---DGAQ--RRLHQGDLLYLG-----------AGA---AHDVNAIT 98 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE---TTEE--EEECTTEEEEEC-----------TTC---CEEEEESS
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE---CCEE--EEECCCCEEEEC-----------CCC---cEEEEeCC
Confidence 3446778888776555556799999999999875 4543 578999887443 223 34566666
Q ss_pred eceEE
Q 005964 570 SVEAY 574 (667)
Q Consensus 570 ~~~l~ 574 (667)
++.++
T Consensus 99 ~~~~~ 103 (114)
T 3fjs_A 99 NTSLL 103 (114)
T ss_dssp SEEEE
T ss_pred CcEEE
Confidence 65543
No 84
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=60.96 E-value=33 Score=32.76 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=52.5
Q ss_pred cceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEe
Q 005964 489 RVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCM 568 (667)
Q Consensus 489 ~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~ 568 (667)
.+....+.||+.+-..--+.+.+.+|++|.+++.. +|++ ..+.+||++=-- .+ ....++|.
T Consensus 38 ~~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i---~~~~--~~l~~Gd~~~~p-----------~~---~~H~~~a~ 98 (227)
T 3rns_A 38 YISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI---ENNK--KTISNGDFLEIT-----------AN---HNYSIEAR 98 (227)
T ss_dssp EEEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE---SSCE--EEEETTEEEEEC-----------SS---CCEEEEES
T ss_pred EEEEEEECCCCccCccccCCCEEEEEEeCEEEEEE---CCEE--EEECCCCEEEEC-----------CC---CCEEEEEC
Confidence 34557789999988777788999999999999875 4544 478899877432 22 34678899
Q ss_pred eeceEEee
Q 005964 569 ESVEAYGL 576 (667)
Q Consensus 569 ~~~~l~~L 576 (667)
+++.++.+
T Consensus 99 ~~~~~l~i 106 (227)
T 3rns_A 99 DNLKLIEI 106 (227)
T ss_dssp SSEEEEEE
T ss_pred CCcEEEEE
Confidence 99988877
No 85
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=59.45 E-value=12 Score=43.12 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhccCccccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005964 343 TILYPIFWGLLNLSSFGNELEPTSNVLEVMFSICIVLCGLTLFTLLVGNIQVSLQV 398 (667)
Q Consensus 343 ~Yl~slYwa~~TlttvGygd~~~~n~~E~i~~i~i~i~G~~~fa~iig~i~~il~~ 398 (667)
....++++++.+++..|. +..|.+...+++.++++++++++.+.-.+++++++..
T Consensus 563 ~~~~~~~~~~~~l~~~g~-~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQGA-DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCC-CcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456789999999988885 6677788999999999999999999999999999864
No 86
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=50.54 E-value=86 Score=25.63 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=33.0
Q ss_pred eeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 491 KALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 491 ~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
....+.||..+-.---...++++|++|.+.+.. +|+. ..+.+|+.+--
T Consensus 43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~---~~~~--~~l~~Gd~~~i 90 (115)
T 1yhf_A 43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI---DQET--YRVAEGQTIVM 90 (115)
T ss_dssp EEEEECTTCEEEEECCSSEEEEEEEESEEEEEE---TTEE--EEEETTCEEEE
T ss_pred EEEEECCCCccCCEECCCcEEEEEEeCEEEEEE---CCEE--EEECCCCEEEE
Confidence 345667777664333335689999999999864 4543 46889988743
No 87
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=48.01 E-value=1.2e+02 Score=25.63 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=33.7
Q ss_pred eeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 492 ALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 492 ~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
...+.||..+-.. ...+++++|++|.+++.. +|++ ..+.+||.+--
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~---~g~~--~~l~~GD~v~i 89 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST---DGET--VTAGPGEIVYM 89 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE---TTEE--EEECTTCEEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE---CCEE--EEECCCCEEEE
Confidence 3556777765433 367899999999999875 5654 47899998754
No 88
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=46.19 E-value=1.1e+02 Score=24.95 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=41.9
Q ss_pred eeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEeee
Q 005964 491 KALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMES 570 (667)
Q Consensus 491 ~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~ 570 (667)
....+.||..+-.---...++++|++|.+.+.. +|+. ..+.+|+.+--- .+. ...+.+.++
T Consensus 37 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~~--~~l~~Gd~~~ip-----------~~~---~H~~~~~~~ 97 (116)
T 2pfw_A 37 VKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV---DGVI--KVLTAGDSFFVP-----------PHV---DHGAVCPTG 97 (116)
T ss_dssp EEEEECTTEEEEEECCSSEEEEEEEEECEEEEE---TTEE--EEECTTCEEEEC-----------TTC---CEEEEESSC
T ss_pred EEEEECCCCcCCcEECCcceEEEEEeeEEEEEE---CCEE--EEeCCCCEEEEC-----------cCC---ceeeEeCCC
Confidence 345667887653322336689999999999865 4543 578999886432 222 244555556
Q ss_pred ceEEee
Q 005964 571 VEAYGL 576 (667)
Q Consensus 571 ~~l~~L 576 (667)
++++.+
T Consensus 98 ~~~l~v 103 (116)
T 2pfw_A 98 GILIDT 103 (116)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 666555
No 89
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=44.72 E-value=30 Score=31.82 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=37.8
Q ss_pred ceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 490 VKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 490 l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
+....+.||.....--..++++++|++|.+++...+.+|.+ ...+.+||.+-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~-~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD-TYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE-EEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE-EEEECCCCEEE
Confidence 45567788887654434467999999999998776555544 45788998874
No 90
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=36.32 E-value=90 Score=26.03 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=33.9
Q ss_pred ceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 490 VKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 490 l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
+....+.||..+-.---...++++|++|.+.+.. +|+. ..+.+|+.+--
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~~--~~l~~Gd~~~i 91 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI---GEET--RVLRPGMAYTI 91 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE---TTEE--EEECTTEEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE---CCEE--EEeCCCCEEEE
Confidence 3446677887764433345789999999999875 4443 57889987643
No 91
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=36.26 E-value=83 Score=25.38 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=33.3
Q ss_pred ceeeEecCCcEEEcc--CCC-cCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 490 VKALIYSKDEKIIRE--GNP-VSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 490 l~~~~~~~ge~Ii~~--Gd~-~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
+....+.||..+-.. --. ..++++|++|.+.+.. +|+. ..+.+|+.+-
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~~~--~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DGHT--QALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TTEE--EEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CCEE--EEeCCCCEEE
Confidence 344567888876543 233 6799999999999865 4443 4688888764
No 92
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=35.00 E-value=64 Score=33.38 Aligned_cols=54 Identities=9% Similarity=0.040 Sum_probs=38.5
Q ss_pred ceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 490 VKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 490 l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
+....+.||...-.---...++++|++|.+++...+.+|+.....+.+||++--
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~~i 134 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYF 134 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEEEE
Confidence 344667888865332223689999999999998776677754457999998743
No 93
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=34.69 E-value=69 Score=32.74 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=36.9
Q ss_pred eeeEecCCcEEEc-cCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 491 KALIYSKDEKIIR-EGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 491 ~~~~~~~ge~Ii~-~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
....+.||...-. --....++++|++|.+++...+.+|+.....+.+||.+-
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEE
Confidence 3456678876533 233378999999999999877666743346789998764
No 94
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=34.17 E-value=97 Score=24.39 Aligned_cols=47 Identities=9% Similarity=0.062 Sum_probs=31.6
Q ss_pred eeeEecCCcEEEccCCC-cCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 491 KALIYSKDEKIIREGNP-VSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 491 ~~~~~~~ge~Ii~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
....+.||..+-.---. ..++++|++|.+.+.. +|+. ..+.+||.+-
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~---~~~~--~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GEEE--ALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TTEE--EEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE---CCEE--EEeCCCCEEE
Confidence 34567788776432223 3579999999999864 3443 4788998774
No 95
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=31.73 E-value=72 Score=29.28 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=27.4
Q ss_pred CcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 507 PVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 507 ~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
+.++++++++|.+.+...+ +|+.....+.+|++|=-
T Consensus 54 ~~dE~FyvlkG~m~i~v~d-~g~~~~v~l~eGE~f~l 89 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWV-DGRRERADLKEGDIFLL 89 (174)
T ss_dssp SSCEEEEEEESCEEEEEEE-TTEEEEEEECTTCEEEE
T ss_pred CCceEEEEEeeEEEEEEEc-CCceeeEEECCCCEEEe
Confidence 3579999999999987654 45433568999999854
No 96
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=30.75 E-value=1.6e+02 Score=26.35 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=32.5
Q ss_pred eeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 491 KALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 491 ~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
....+.||..+-.---...++++|++|.+.+.. +|+. ..+.+||++--
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i---~~~~--~~l~~Gd~i~i 106 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL---DDRV--EPLTPLDCVYI 106 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE---TTEE--EEECTTCEEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE---CCEE--EEECCCCEEEE
Confidence 345566776554333346799999999999864 4443 57889988743
No 97
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=30.29 E-value=1.6e+02 Score=27.86 Aligned_cols=50 Identities=18% Similarity=0.140 Sum_probs=36.7
Q ss_pred cceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 489 RVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 489 ~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
.+....+.||+.+-..--+...+++|++|.+++.. +|+. ..+.+||.+=-
T Consensus 154 ~~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~g~~--~~l~~Gd~i~i 203 (227)
T 3rns_A 154 VMTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV---DGKP--FIVKKGESAVL 203 (227)
T ss_dssp EEEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE---TTEE--EEEETTEEEEE
T ss_pred EEEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE---CCEE--EEECCCCEEEE
Confidence 34457788998876544456789999999999875 4553 57889988743
No 98
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=30.27 E-value=1.8e+02 Score=23.64 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=33.3
Q ss_pred eeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 491 KALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 491 ~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
....+.||+.-.. -...++++|++|.+.+.. .+|+. ..+.+||.+--
T Consensus 34 ~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i--~~g~~--~~l~~GD~i~i 80 (101)
T 1o5u_A 34 PIWEKEVSEFDWY--YDTNETCYILEGKVEVTT--EDGKK--YVIEKGDLVTF 80 (101)
T ss_dssp CEEEECSEEEEEE--CSSCEEEEEEEEEEEEEE--TTCCE--EEEETTCEEEE
T ss_pred EEEEeCCCccccc--CCceEEEEEEeCEEEEEE--CCCCE--EEECCCCEEEE
Confidence 3566777776544 346799999999999875 22544 47899998754
No 99
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=29.73 E-value=1.2e+02 Score=25.24 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=32.3
Q ss_pred ceeeEecCCcEEEccCCC-cCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 490 VKALIYSKDEKIIREGNP-VSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 490 l~~~~~~~ge~Ii~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
+....+.||..+-.---. ..++++|++|.+.+.. .+|++ ..+.+||.+-
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~~~~--~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ--GNGIV--THLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC--STTCE--EEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE--CCCeE--EEeCCCCEEE
Confidence 344667788776443333 3688899999999753 24544 4678888764
No 100
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=29.19 E-value=85 Score=27.71 Aligned_cols=64 Identities=6% Similarity=0.023 Sum_probs=39.5
Q ss_pred EccCCCcCeEEEEEeeEEEEEEEcC-CC--eEEEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCH
Q 005964 502 IREGNPVSRMVFLVRGRIKRSQSLS-KG--KLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNA 578 (667)
Q Consensus 502 i~~Gd~~~~lyfI~~G~v~v~~~~~-~g--~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~ 578 (667)
+..-+..|++|+|++|.+.+...+. ++ ..-...+.+|+++--- .+ --.+-.|.++|.++.+..
T Consensus 44 ~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVP-----------kG---veH~p~a~~e~~vLLiEp 109 (140)
T 3d0j_A 44 LEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVP-----------AE---CWFYSITQKDTKMMYVQD 109 (140)
T ss_dssp EEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEEC-----------TT---CEEEEEECTTCEEEEEEE
T ss_pred hccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeC-----------CC---ccCcccCCCceEEEEEEe
Confidence 4455667999999999999876532 11 1124578999988543 11 123445556677766654
Q ss_pred H
Q 005964 579 S 579 (667)
Q Consensus 579 ~ 579 (667)
.
T Consensus 110 ~ 110 (140)
T 3d0j_A 110 S 110 (140)
T ss_dssp S
T ss_pred C
Confidence 3
No 101
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=29.10 E-value=1.1e+02 Score=31.23 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=38.0
Q ss_pred ceeeEecCCcEEEccCCC-cCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 490 VKALIYSKDEKIIREGNP-VSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 490 l~~~~~~~ge~Ii~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
+....+.||..+-..--. ..++++|++|.+++...+.+|+.....+.+||.+--
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~i 290 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGYV 290 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEEE
Confidence 445677888876433223 479999999999987655567633467899998843
No 102
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=28.41 E-value=75 Score=25.78 Aligned_cols=68 Identities=10% Similarity=0.043 Sum_probs=40.4
Q ss_pred ecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEeeeceEE
Q 005964 495 YSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAY 574 (667)
Q Consensus 495 ~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~ 574 (667)
..+|+......+...++++|++|.+.+.. .+|+. ..+.+||.+--- .+.+ ..+.+.+++.++
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~~~--~~l~~Gd~~~ip-----------~~~~---H~~~~~~~~~~l 96 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDF--ADGGS--MTIREGEMAVVP-----------KSVS---HRPRSENGCSLV 96 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEE--TTSCE--EEECTTEEEEEC-----------TTCC---EEEEEEEEEEEE
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEE--CCCcE--EEECCCCEEEEC-----------CCCc---EeeEeCCCeEEE
Confidence 34555433333334799999999999875 23243 478999887433 3344 334445677777
Q ss_pred eeCHHH
Q 005964 575 GLNASD 580 (667)
Q Consensus 575 ~L~~~d 580 (667)
.++...
T Consensus 97 ~i~~~~ 102 (107)
T 2i45_A 97 LIELSD 102 (107)
T ss_dssp EEECC-
T ss_pred EEECCC
Confidence 776544
No 103
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=27.29 E-value=1.3e+02 Score=27.79 Aligned_cols=54 Identities=11% Similarity=0.058 Sum_probs=35.9
Q ss_pred ceeeEecCCcEEEc-cCCCcCeEEEEEeeEEEEEEEcCC---CeEEEEEcCCCCeEec
Q 005964 490 VKALIYSKDEKIIR-EGNPVSRMVFLVRGRIKRSQSLSK---GKLATSVLGPGGFLGD 543 (667)
Q Consensus 490 l~~~~~~~ge~Ii~-~Gd~~~~lyfI~~G~v~v~~~~~~---g~~~i~~l~~G~~fGe 543 (667)
+....+.||...-. ......++++|++|.+++...+.+ ++.....+.+||.+--
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~i 131 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVI 131 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEE
Confidence 44567788876532 223357999999999998764433 4433567899988743
No 104
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=27.27 E-value=3.6e+02 Score=24.61 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=39.5
Q ss_pred HHHHHHhcccee----eEecCCcEEE-ccCC----------CcCeEEEEEeeEEEEEEEcCCC----eEEEEEcCCCCeE
Q 005964 481 LVLDNICDRVKA----LIYSKDEKII-REGN----------PVSRMVFLVRGRIKRSQSLSKG----KLATSVLGPGGFL 541 (667)
Q Consensus 481 ~~l~~i~~~l~~----~~~~~ge~Ii-~~Gd----------~~~~lyfI~~G~v~v~~~~~~g----~~~i~~l~~G~~f 541 (667)
+-+++....++| +..-.+++++ .-|. +.++++++++|.+.+...+ +| +.....+.+|++|
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d-~g~~~~~~~dv~i~eGdmf 90 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVD-ETDAEPKFIDIIINEGDSY 90 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEE-CSSSSCEEEEEEECTTEEE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEc-CCCcccceeeEEECCCCEE
Confidence 344556666666 4433355553 2333 3458999999999998765 35 2234679999998
Q ss_pred ec
Q 005964 542 GD 543 (667)
Q Consensus 542 Ge 543 (667)
=-
T Consensus 91 ll 92 (176)
T 1zvf_A 91 LL 92 (176)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 105
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=26.78 E-value=1.1e+02 Score=31.54 Aligned_cols=54 Identities=11% Similarity=0.022 Sum_probs=37.4
Q ss_pred ceeeEecCCcEEEccCCCc-CeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 490 VKALIYSKDEKIIREGNPV-SRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 490 l~~~~~~~ge~Ii~~Gd~~-~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
+....+.||...-..-... .++++|++|.+++...+.+|+.....+.+||.+--
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~i 313 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYV 313 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEEE
Confidence 3446678887764333334 79999999999987654566533567899998754
No 106
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=26.50 E-value=61 Score=27.79 Aligned_cols=47 Identities=6% Similarity=0.058 Sum_probs=32.1
Q ss_pred eEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEecc
Q 005964 493 LIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDE 544 (667)
Q Consensus 493 ~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~ 544 (667)
-...||..-....+ .+++++|++|.+.+.. ++|+. ..+.+||.+---
T Consensus 54 w~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~--~~g~~--~~l~~GD~~~ip 100 (123)
T 3bcw_A 54 WESTSGSFQSNTTG-YIEYCHIIEGEARLVD--PDGTV--HAVKAGDAFIMP 100 (123)
T ss_dssp EEEEEEEEECCCTT-EEEEEEEEEEEEEEEC--TTCCE--EEEETTCEEEEC
T ss_pred EEECCCceeeEcCC-CcEEEEEEEEEEEEEE--CCCeE--EEECCCCEEEEC
Confidence 34456666554332 3899999999999863 35654 468999988543
No 107
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=25.73 E-value=2.8e+02 Score=22.83 Aligned_cols=79 Identities=8% Similarity=-0.018 Sum_probs=46.6
Q ss_pred eeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEe--e
Q 005964 492 ALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCM--E 569 (667)
Q Consensus 492 ~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~--~ 569 (667)
...+.||...-.---...++++|.+|.+.+.. +|+. ..+.+|+.+--- .+.+ ..+.+. +
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i---~~~~--~~l~~Gd~~~i~-----------~~~~---H~~~~~~~~ 98 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI---NDED--FPVTKGDLIIIP-----------LDSE---HHVINNNQE 98 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE---TTEE--EEEETTCEEEEC-----------TTCC---EEEEECSSS
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE---CCEE--EEECCCcEEEEC-----------CCCc---EEeEeCCCC
Confidence 34556666433222345689999999999875 4543 468899877433 2233 233333 2
Q ss_pred ec--eEEeeCHHHHHHHHHHcH
Q 005964 570 SV--EAYGLNASDLRYIADHFR 589 (667)
Q Consensus 570 ~~--~l~~L~~~df~~l~~~~p 589 (667)
++ .++.++.+-+..++.+-+
T Consensus 99 ~~~~~~i~f~~~~~~~~~~~~~ 120 (128)
T 4i4a_A 99 DFHFYTIWWDKESTLNFLTRLE 120 (128)
T ss_dssp CEEEEEEEECHHHHHHHHHHHH
T ss_pred CEEEEEEEECHHHHHHHHHhcc
Confidence 22 345677777776666544
No 108
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=25.33 E-value=1.6e+02 Score=31.79 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=43.2
Q ss_pred HHHHhccceeeEecCCcEEEc-cCCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEec
Q 005964 483 LDNICDRVKALIYSKDEKIIR-EGNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGD 543 (667)
Q Consensus 483 l~~i~~~l~~~~~~~ge~Ii~-~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe 543 (667)
+..+-..+....+.||..+-. -...++++++|++|.+++...+.+|... ...+.+||++--
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~vv 424 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLVV 424 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEEE
Confidence 344445566677888886543 2233689999999999998777777654 356999998843
No 109
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=24.84 E-value=2.2e+02 Score=28.12 Aligned_cols=61 Identities=11% Similarity=0.109 Sum_probs=40.7
Q ss_pred CCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeCHHH
Q 005964 505 GNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLNASD 580 (667)
Q Consensus 505 Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~~~d 580 (667)
-+..+++|++++|.+.+-..+ +|+.....+.+|++|=-- .+.| .+=++-++|..+++.+..
T Consensus 48 ~~~~dE~FyqlkG~m~l~~~d-~g~~~~V~i~eGemfllP-----------~gv~---HsP~r~~et~gLviE~~R 108 (286)
T 2qnk_A 48 IEEGEEVFYQLEGDMVLRVLE-QGKHRDVVIRQGEIFLLP-----------ARVP---HSPQRFANTVGLVVERRR 108 (286)
T ss_dssp ECSSCEEEEEEESCEEEEEEE-TTEEEEEEECTTEEEEEC-----------TTCC---EEEEECTTCEEEEEEECC
T ss_pred CCCCCeEEEEEeCeEEEEEEe-CCceeeEEECCCeEEEeC-----------CCCC---cCCcccCCeEEEEEeecC
Confidence 345689999999999988764 464334679999988443 3333 334445677777776443
No 110
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=24.52 E-value=1e+02 Score=27.40 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=30.1
Q ss_pred eeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 492 ALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 492 ~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
...+.||..+-..--...++++|++|.+++.. +|+. ..+.+||++=
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v---~g~~--~~l~~Gd~i~ 93 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV---GETI--SDVAQGDLVF 93 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE---TTEE--EEEETTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCEE--EEeCCCCEEE
Confidence 34456666543333345689999999999874 4543 4678888763
No 111
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=24.47 E-value=1e+02 Score=27.85 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=30.4
Q ss_pred eeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 492 ALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 492 ~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
...+.||..+-.---...++++|++|.+++.. +|+. ..+.+||.+-
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v---~g~~--~~l~~GD~i~ 102 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMV---GRAV--SAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEE---TTEE--EEECTTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCEE--EEeCCCCEEE
Confidence 34556666553333345689999999999864 4543 4688888774
No 112
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=24.33 E-value=84 Score=33.49 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=39.9
Q ss_pred ccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 488 DRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 488 ~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
-.+....+.||..+..---.++++++|++|...+...+.++.+ ...+.+||.+-
T Consensus 86 ~s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~-~~~l~~GDv~~ 139 (445)
T 2cav_A 86 YRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD-TYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE-EEEEETTEEEE
T ss_pred EEEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE-EEEecCCCEEE
Confidence 4455678889987765555578999999999998766555443 56788888874
No 113
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=24.26 E-value=93 Score=32.82 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=39.6
Q ss_pred ccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 488 DRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 488 ~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
..+....+.||..+..--...+++++|++|...+...+.++.+ ...+.+||.+-
T Consensus 49 ~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~-~~~l~~GDv~~ 102 (416)
T 1uij_A 49 YRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRD-SYNLHPGDAQR 102 (416)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEE-EEEECTTEEEE
T ss_pred EEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCe-EEEecCCCEEE
Confidence 4456788899987765555678999999999998765543333 46788888773
No 114
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=24.17 E-value=80 Score=28.89 Aligned_cols=48 Identities=10% Similarity=0.182 Sum_probs=31.5
Q ss_pred ceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeE
Q 005964 490 VKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFL 541 (667)
Q Consensus 490 l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 541 (667)
+....+.||...-.--....+..+|++|.+++.. .+|++ ..+.+||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l--d~ge~--~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELEL--DDGAK--RTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEEC--GGGCE--EEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEE--CCCeE--EEECCCCEE
Confidence 3445677776433222334568899999999864 22544 468999998
No 115
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=24.15 E-value=1.8e+02 Score=22.82 Aligned_cols=51 Identities=8% Similarity=0.099 Sum_probs=33.9
Q ss_pred cCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEeccchhhccCCCCCCCCCCcceEEEEeeeceEEeeC
Q 005964 508 VSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDELLSWCLRRPFKDRLPASPATFTCMESVEAYGLN 577 (667)
Q Consensus 508 ~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~~Ll~~l~~sf~~~~p~~~~tv~A~~~~~l~~L~ 577 (667)
..++++|++|.+.+.. +|+. ..+.+|+.+--- .+.+ ..+.+.+++.++.++
T Consensus 50 ~~e~~~v~~G~~~~~~---~~~~--~~l~~Gd~~~ip-----------~~~~---H~~~~~~~~~~l~i~ 100 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAF---RDQN--ITLQAGEMYVIP-----------KGVE---HKPMAKEECKIMIIE 100 (102)
T ss_dssp CCEEEEEEESEEEEEC---SSCE--EEEETTEEEEEC-----------TTCC---BEEEEEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEE---CCEE--EEEcCCCEEEEC-----------CCCe---EeeEcCCCCEEEEEE
Confidence 3789999999999764 4443 467899876432 2333 345555778777764
No 116
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=24.07 E-value=2.6e+02 Score=26.75 Aligned_cols=45 Identities=11% Similarity=0.156 Sum_probs=32.7
Q ss_pred eeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 492 ALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 492 ~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
...+.||...-..- .+++.+|++|.+++.. +|++ ..+.+||.+--
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~---~~~~--~~l~~Gd~~~~ 98 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV---GGET--RTLREYDYVYL 98 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC---SSCE--EEECTTEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE---CCEE--EEECCCCEEEE
Confidence 45677887655442 7789999999999864 4554 47899998754
No 117
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=23.51 E-value=84 Score=25.05 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=31.5
Q ss_pred eeeEecCCcEEEccCCCc-CeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 491 KALIYSKDEKIIREGNPV-SRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 491 ~~~~~~~ge~Ii~~Gd~~-~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
....+.||...-.---.. .++++|++|.+++.. .+|.+ ...+.+||.+-.
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~g~~-~~~l~~Gd~~~~ 71 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET--PEGSV-TSQLTRGVSYTR 71 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE--TTEEE-EEEECTTCCEEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe--CCCCE-EEEEcCCCEEEe
Confidence 345677777642222223 359999999999875 34422 357899988744
No 118
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=23.22 E-value=1e+02 Score=32.77 Aligned_cols=54 Identities=9% Similarity=0.084 Sum_probs=39.8
Q ss_pred ccceeeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 488 DRVKALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 488 ~~l~~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
..+....+.||..+..--...+++++|++|...+...+.++.+ ...+.+||++-
T Consensus 61 ~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~-~~~l~~GDv~~ 114 (434)
T 2ea7_A 61 YRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD-SYILEQGHAQK 114 (434)
T ss_dssp CEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE-EEEEETTEEEE
T ss_pred EEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE-EEEeCCCCEEE
Confidence 4566788899988876655678999999999998776544333 45677887763
No 119
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=22.69 E-value=1.7e+02 Score=31.65 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=41.8
Q ss_pred HHHhccceeeEecCCcEEEcc-CCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEe
Q 005964 484 DNICDRVKALIYSKDEKIIRE-GNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLG 542 (667)
Q Consensus 484 ~~i~~~l~~~~~~~ge~Ii~~-Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fG 542 (667)
..+-..+....+.||..+-.- ...++++++|++|.+++...+.+|... ...+.+||++-
T Consensus 368 ~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~v 428 (510)
T 3c3v_A 368 RWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVLV 428 (510)
T ss_dssp HHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEEE
Confidence 344455666788888865432 233689999999999998777777553 45688998873
No 120
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=22.67 E-value=2e+02 Score=31.26 Aligned_cols=61 Identities=10% Similarity=0.122 Sum_probs=44.9
Q ss_pred HHHHhccceeeEecCCcEEEcc-CCCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEec
Q 005964 483 LDNICDRVKALIYSKDEKIIRE-GNPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLGD 543 (667)
Q Consensus 483 l~~i~~~l~~~~~~~ge~Ii~~-Gd~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fGe 543 (667)
+..+-..+....+.||.++--- .-.++++.+|++|.+++...+.+|... ...+.+||+|--
T Consensus 389 L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v~ 451 (531)
T 3fz3_A 389 LRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFIV 451 (531)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEE
T ss_pred cccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEEE
Confidence 4444456667888888877432 233689999999999998888777653 678999998843
No 121
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=22.36 E-value=1.1e+02 Score=27.21 Aligned_cols=48 Identities=10% Similarity=0.048 Sum_probs=32.0
Q ss_pred eeeEecCCcEEE--ccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 491 KALIYSKDEKII--REGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 491 ~~~~~~~ge~Ii--~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
....+.||.... ...+..+++++|++|.+.+.. +|++ ..+.+|+.+--
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~---~~~~--~~l~~GD~i~i 95 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD---DQGE--HPMVPGDCAAF 95 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE---TTEE--EEECTTCEEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE---CCEE--EEeCCCCEEEE
Confidence 346667777542 222334699999999999875 4443 46888887643
No 122
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=22.25 E-value=1.2e+02 Score=28.04 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=27.1
Q ss_pred CeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 509 SRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 509 ~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
.++++|++|.+.+...+..|+.....+.+||.+-
T Consensus 97 ~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ 130 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVY 130 (190)
T ss_dssp CEEEEEEESCEEEEEECTTCCEEEEEECTTCEEE
T ss_pred CEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEE
Confidence 6999999999999876555665556799999874
No 123
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=22.02 E-value=1.4e+02 Score=25.36 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=31.1
Q ss_pred eeEecCCcEEEccCCC-cCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 492 ALIYSKDEKIIREGNP-VSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 492 ~~~~~~ge~Ii~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
...+.||..+-.---. ..++++|++|.+.+.. +|+. ..+.+||.+-
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i---~~~~--~~l~~Gd~i~ 107 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NGKD--VPIKAGDVCF 107 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TTEE--EEEETTEEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEE---CCEE--EEeCCCcEEE
Confidence 4567788765322222 4689999999999864 4543 4688888763
No 124
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=21.87 E-value=1.1e+02 Score=26.89 Aligned_cols=46 Identities=11% Similarity=0.228 Sum_probs=31.4
Q ss_pred eeeEecCCcE-E-EccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeE
Q 005964 491 KALIYSKDEK-I-IREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFL 541 (667)
Q Consensus 491 ~~~~~~~ge~-I-i~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 541 (667)
....+.||.. . ...-....++++|++|.+.+.. +|++ ..+.+||.+
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~---~~~~--~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM---ENDQ--YPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE---TTEE--EEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE---CCEE--EEeCCCCEE
Confidence 3466777774 2 2222346799999999999874 4543 468899987
No 125
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=21.71 E-value=95 Score=26.44 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=31.2
Q ss_pred EecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 494 IYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 494 ~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
...||..-... +..++++.|++|.+.+.. ++|.. ..+.+||.+--
T Consensus 48 e~tPG~~~~~~-~~~~E~~~iLeG~~~lt~--ddG~~--~~l~aGD~~~~ 92 (116)
T 3es4_A 48 MAEPGIYNYAG-RDLEETFVVVEGEALYSQ--ADADP--VKIGPGSIVSI 92 (116)
T ss_dssp EECSEEEEECC-CSEEEEEEEEECCEEEEE--TTCCC--EEECTTEEEEE
T ss_pred ecCCceeECee-CCCcEEEEEEEeEEEEEe--CCCeE--EEECCCCEEEE
Confidence 44566555544 334589999999999974 46754 46889988754
No 126
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=21.05 E-value=1.6e+02 Score=31.50 Aligned_cols=56 Identities=13% Similarity=0.072 Sum_probs=39.7
Q ss_pred hccceeeEecCCcEEEccC-CCcCeEEEEEeeEEEEEEEcCCCeEE-EEEcCCCCeEe
Q 005964 487 CDRVKALIYSKDEKIIREG-NPVSRMVFLVRGRIKRSQSLSKGKLA-TSVLGPGGFLG 542 (667)
Q Consensus 487 ~~~l~~~~~~~ge~Ii~~G-d~~~~lyfI~~G~v~v~~~~~~g~~~-i~~l~~G~~fG 542 (667)
-..+....+.||..+-.-= ..++++++|++|.+++...+.+|... ...+.+||++-
T Consensus 337 ~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~v 394 (476)
T 1fxz_A 337 RLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLI 394 (476)
T ss_dssp TCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred cceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEE
Confidence 3445567788888654322 23679999999999998777777553 45688888873
No 127
>1lj2_A NSP3-C, nonstructural RNA-binding protein 34, NS34, NCVP4; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} SCOP: h.1.13.2
Probab=20.85 E-value=3e+02 Score=22.69 Aligned_cols=55 Identities=18% Similarity=0.327 Sum_probs=33.9
Q ss_pred HHHHHHHHHHH----HHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcCCCHHHHHhhCChhHH
Q 005964 400 MARRKKIQLRS----RDMEWWMRRRQLTSGLKWRVRHFERQRWATMGEDELDWIEDLPQGLR 457 (667)
Q Consensus 400 ~~~~~~~~~~~----~~v~~~m~~~~lp~~L~~rV~~y~~~~~~~~~~de~~il~~Lp~~Lr 457 (667)
+....+++.|+ ..+++|++..++|.+.+..+..-++ .-+-++...-+.++-.-+|
T Consensus 23 ~klE~dlq~ki~slisSiEw~l~Smel~de~K~DieQqLn---sid~Inp~~aiddiE~~Ir 81 (110)
T 1lj2_A 23 NKLERDLQNKIGSLTSSIEWYLRSMELDPEIKADIEQQIN---SIDAINPLHAFDDLESVIR 81 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHT---TSCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHhc---cccccCcchhHhHHHHHHH
Confidence 34455666664 5688999999999998877654443 1115555555554443333
No 128
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=20.74 E-value=35 Score=27.88 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=32.7
Q ss_pred cceeeEecCCcEEEccCCC-cCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeE
Q 005964 489 RVKALIYSKDEKIIREGNP-VSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFL 541 (667)
Q Consensus 489 ~l~~~~~~~ge~Ii~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~f 541 (667)
+.+...++||+.+-..--. ....++|.+|.+.+.. .+|......+.+|+.+
T Consensus 18 rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~--~d~~~~~~~l~~G~~~ 69 (98)
T 3lag_A 18 RVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA--PDGTRSLAQLKTGRSY 69 (98)
T ss_dssp EEEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC--TTSCEECCCBCTTCCE
T ss_pred EEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe--CCCceEEEEecCCcEE
Confidence 3456778899887544433 3467888899998864 4554433456777765
No 129
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=20.66 E-value=1.3e+02 Score=25.33 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=29.4
Q ss_pred eEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEe
Q 005964 493 LIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLG 542 (667)
Q Consensus 493 ~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fG 542 (667)
..+.||...-.---...++++|++|.+.+.. +|++ ..+.+|+.+-
T Consensus 53 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~--~~l~~Gd~i~ 97 (126)
T 1vj2_A 53 FTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK---EQGE--ETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEECCSSCEEEEEEESEEEEEC---SSCE--EEEETTEEEE
T ss_pred EEECCCCcCCceeCCCcEEEEEEEeEEEEEE---CCEE--EEECCCCEEE
Confidence 4556665543222336789999999999764 3443 4678888764
No 130
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=20.42 E-value=2.3e+02 Score=24.59 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=30.7
Q ss_pred eeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 492 ALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 492 ~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
...+.||..+-.---...++++|++|.+.+.. +|++ ...+.+|+.+--
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~---~~~~-~~~l~~Gd~i~i 99 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQE---RGKP-ARILKKGDVVEI 99 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEE---TTSC-CEEEETTCEEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEE---CCEE-EEEECCCCEEEE
Confidence 45567776653322334689999999999875 3332 135788887743
No 131
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=20.36 E-value=1.6e+02 Score=26.76 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=31.0
Q ss_pred eEecCCcEEEc---cCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 493 LIYSKDEKIIR---EGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 493 ~~~~~ge~Ii~---~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
..+.||...-. -.....++++|++|.+.+.. +.+|......+.+||.+--
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~-~~~~~~~~~~l~~GD~~~~ 174 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKW-GDKENPKEALLPTGASMFV 174 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEE-SCTTSCEEEEECTTCEEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEE-CCcCCcccEEECCCCEEEe
Confidence 45667765431 22234689999999999875 2111112357999998744
No 132
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=20.24 E-value=1.2e+02 Score=26.25 Aligned_cols=46 Identities=7% Similarity=0.074 Sum_probs=31.7
Q ss_pred eeEecCCcEEEccCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEecc
Q 005964 492 ALIYSKDEKIIREGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGDE 544 (667)
Q Consensus 492 ~~~~~~ge~Ii~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe~ 544 (667)
...+.||..-.. ...+++++|++|.+.+.. +|+. ..+.+||.+---
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~---~g~~--~~l~~GD~i~~p 106 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRH---EGET--MIAKAGDVMFIP 106 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEE---TTEE--EEEETTCEEEEC
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEE---CCEE--EEECCCcEEEEC
Confidence 345667743222 236799999999999875 4654 378999988543
No 133
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=20.20 E-value=2.1e+02 Score=25.82 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=31.4
Q ss_pred eEecCCcEEEc--cCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 493 LIYSKDEKIIR--EGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 493 ~~~~~ge~Ii~--~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
..+.||...-. -.....++++|++|.+.+.. +|+. ..+.+||.+--
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~---~~~~--~~l~~GD~i~i 156 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF---DEQW--HELQQGEHIRF 156 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE---TTEE--EEECTTCEEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE---CCEE--EEeCCCCEEEE
Confidence 45677776542 12334699999999999865 4543 47899998743
No 134
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=20.15 E-value=2.6e+02 Score=26.75 Aligned_cols=52 Identities=8% Similarity=0.035 Sum_probs=37.9
Q ss_pred hccceeeEecCCcEEEc-cCCCcCeEEEEEeeEEEEEEEcCCCeEEEEEcCCCCeEec
Q 005964 487 CDRVKALIYSKDEKIIR-EGNPVSRMVFLVRGRIKRSQSLSKGKLATSVLGPGGFLGD 543 (667)
Q Consensus 487 ~~~l~~~~~~~ge~Ii~-~Gd~~~~lyfI~~G~v~v~~~~~~g~~~i~~l~~G~~fGe 543 (667)
...+....+.||..+-. +-....+.++|++|++.+.. +|+. ..+.+||++--
T Consensus 164 ~~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~---~~~~--~~l~~GD~~~~ 216 (246)
T 1sfn_A 164 DFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EENY--YPVTAGDIIWM 216 (246)
T ss_dssp SEEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TTEE--EEEETTCEEEE
T ss_pred CeEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE---CCEE--EEcCCCCEEEE
Confidence 34456678899987754 34456689999999999864 5655 47899998754
Done!