BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005965
(667 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EPN|A Chain A, Crystal Structure Of Caulobacter Crescentus Thic Complexed
With Imidazole Ribonucleotide
pdb|3EPN|B Chain B, Crystal Structure Of Caulobacter Crescentus Thic Complexed
With Imidazole Ribonucleotide
pdb|3EPO|A Chain A, Crystal Structure Of Caulobacter Crescentus Thic Complexed
With Hmp-P
pdb|3EPO|B Chain B, Crystal Structure Of Caulobacter Crescentus Thic Complexed
With Hmp-P
Length = 612
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/591 (60%), Positives = 410/591 (69%), Gaps = 83/591 (14%)
Query: 109 LQVPFRRI--HLSGDEPNFDTYDTSGPQN-----ISPRVGLPKLRKDWIDRR---EKLGA 158
L+VPFR + H S +EP YD SGP + I GLP+ R+ + R E++
Sbjct: 35 LRVPFREVAVHPSANEPPVTIYDPSGPYSDPAIQIDIEKGLPRTREALVVARGDVEEVAD 94
Query: 159 PR----------------------------------YTQMYYAKQGVITEEMLYCATREK 184
PR TQ+ YA+ G+IT EM Y A RE
Sbjct: 95 PRQVKPEDNGFAQGKHLAPEFPDTGRKIYRAKPGKLVTQLEYARAGIITAEMEYVAIREN 154
Query: 185 L-----------------------DPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLV 221
L PEFVR E+ARGRAIIP+N H ELEPM +GRNFLV
Sbjct: 155 LRREQDRPCVRDGEDFGASIPDFVTPEFVRQEIARGRAIIPANINHGELEPMAIGRNFLV 214
Query: 222 KVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTV 281
K+NANIGNSAV S++ +EV K+ WAT WGADTVMDLSTGR+IH R+WI+RNS+VP+GTV
Sbjct: 215 KINANIGNSAVLSTVADEVDKLVWATRWGADTVMDLSTGRNIHNIRDWIIRNSSVPIGTV 274
Query: 282 PIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSR 341
PIYQALEKV+G+AE+L+WEVFRDTLIEQ EQGVDYFTIHAGV L +IP+TAKR+TGIVSR
Sbjct: 275 PIYQALEKVNGVAEDLNWEVFRDTLIEQCEQGVDYFTIHAGVRLPFIPMTAKRVTGIVSR 334
Query: 342 GGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELL 401
GGSI AKWCLA+HKENF YE +DEI +I YDV+ S+GDGLRPGS DAND AQF+EL
Sbjct: 335 GGSIMAKWCLAHHKENFLYERFDEICEIMRAYDVSFSLGDGLRPGSTADANDEAQFSELR 394
Query: 402 TQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYD 461
T GELT+ AW VQVM EGPGH+ MHKI NM +QL+ C+EAPFYTLGPLTTDIAPGYD
Sbjct: 395 TLGELTKVAWKHGVQVMIEGPGHVAMHKIKANMDEQLKHCHEAPFYTLGPLTTDIAPGYD 454
Query: 462 HITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQ 521
HITSAIGAA IG GTA+LCYVTPKEHLGLP+RDDVK GVI YK+AAHAADLAKGHP A
Sbjct: 455 HITSAIGAAMIGWFGTAMLCYVTPKEHLGLPDRDDVKTGVITYKLAAHAADLAKGHPGAA 514
Query: 522 TWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKIT 581
WDDA+S+ARFEFRW DQF L LDP TA FHDETLP E K AHFCSMCGPKFCSMKI+
Sbjct: 515 MWDDAISRARFEFRWEDQFNLGLDPETARKFHDETLPKEAHKTAHFCSMCGPKFCSMKIS 574
Query: 582 EDVRKYAEEHGYGSAEEALQQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYL 632
++VR +A G A + + GM MS +F E G EIYL
Sbjct: 575 QEVRDFAA----GKAPNSAELGMAEMSEKFR------------EQGSEIYL 609
>pdb|3EPM|A Chain A, Crystal Structure Of Caulobacter Crescentus Thic
pdb|3EPM|B Chain B, Crystal Structure Of Caulobacter Crescentus Thic
Length = 612
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/591 (58%), Positives = 399/591 (67%), Gaps = 83/591 (14%)
Query: 109 LQVPFRRI--HLSGDEPNFDTYDTSGPQN-----ISPRVGLPKLRKDWIDRR---EKLGA 158
L+VPFR + H S +EP YD SGP + I GLP+ R+ + R E++
Sbjct: 35 LRVPFREVAVHPSANEPPVTIYDPSGPYSDPAIQIDIEKGLPRTREALVVARGDVEEVAD 94
Query: 159 PR----------------------------------YTQMYYAKQGVITEEMLYCATREK 184
PR TQ+ YA+ G+IT E Y A RE
Sbjct: 95 PRQVKPEDNGFAQGKHLAPEFPDTGRKIYRAKPGKLVTQLEYARAGIITAEXEYVAIREN 154
Query: 185 L-----------------------DPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLV 221
L PEFVR E+ARGRAIIP+N H ELEP +GRNFLV
Sbjct: 155 LRREQDRPCVRDGEDFGASIPDFVTPEFVRQEIARGRAIIPANINHGELEPXAIGRNFLV 214
Query: 222 KVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTV 281
K+NANIGNSAV S++ +EV K+ WAT WGADTV DLSTGR+IH R+WI+RNS+VP+GTV
Sbjct: 215 KINANIGNSAVLSTVADEVDKLVWATRWGADTVXDLSTGRNIHNIRDWIIRNSSVPIGTV 274
Query: 282 PIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSR 341
PIYQALEKV+G+AE+L+WEVFRDTLIEQ EQGVDYFTIHAGV L +IP TAKR+TGIVSR
Sbjct: 275 PIYQALEKVNGVAEDLNWEVFRDTLIEQCEQGVDYFTIHAGVRLPFIPXTAKRVTGIVSR 334
Query: 342 GGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELL 401
GGSI AKWCLA+HKENF YE +DEI +I YDV+ S+GDGLRPGS DAND AQF+EL
Sbjct: 335 GGSIXAKWCLAHHKENFLYERFDEICEIXRAYDVSFSLGDGLRPGSTADANDEAQFSELR 394
Query: 402 TQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYD 461
T GELT+ AW VQV EGPGH+ HKI N +QL+ C+EAPFYTLGPLTTDIAPGYD
Sbjct: 395 TLGELTKVAWKHGVQVXIEGPGHVAXHKIKANXDEQLKHCHEAPFYTLGPLTTDIAPGYD 454
Query: 462 HITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQ 521
HITSAIGAA IG GTA LCYVTPKEHLGLP+RDDVK GVI YK+AAHAADLAKGHP A
Sbjct: 455 HITSAIGAAXIGWFGTAXLCYVTPKEHLGLPDRDDVKTGVITYKLAAHAADLAKGHPGAA 514
Query: 522 TWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKIT 581
WDDA+S+ARFEFRW DQF L LDP TA FHDETLP E K AHFCS CGPKFCS KI+
Sbjct: 515 XWDDAISRARFEFRWEDQFNLGLDPETARKFHDETLPKEAHKTAHFCSXCGPKFCSXKIS 574
Query: 582 EDVRKYAEEHGYGSAEEALQQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYL 632
++VR +A G SAE A+ + E+ E G EIYL
Sbjct: 575 QEVRDFA-------------AGKAPNSAELGXAEXS---EKFREQGSEIYL 609
>pdb|3NBU|A Chain A, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|B Chain B, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|C Chain C, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|D Chain D, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|E Chain E, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|F Chain F, Crystal Structure Of Pgi Glucosephosphate Isomerase
Length = 549
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 69 RKHTADPASPDFL-PLPSFEQCFPKSSKEYREITHEESGHILQVPFRRIHLSGDEPNFDT 127
R DPA+ D++ P FE P +S REIT G ++ + +I G N T
Sbjct: 445 RDQGKDPATLDYVVPFKVFEGNRPTNSILLREITPFSLGALIALYEHKIFTQGVILNIFT 504
Query: 128 YDTSGPQ---NISPRVGLPKLRKD 148
+D G + ++ R+ LP+L+ D
Sbjct: 505 FDQWGVELGKQLANRI-LPELKDD 527
>pdb|2XQO|A Chain A, Ctcel124: A Cellulase From Clostridium Thermocellum
Length = 243
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 34/99 (34%), Gaps = 22/99 (22%)
Query: 361 EHWDEILDICN----QYDVALSIGDGLRPGSIYDANDTAQ-----FAELLTQGELTRRAW 411
EHWD I D+C + A G R + A +T F L T
Sbjct: 68 EHWDVIRDVCGFKNKEVAYAFFFGXATRESTFRAATETGSGASHAFGPLQT--------- 118
Query: 412 DKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLG 450
+ N P + P H +PE Q E FY +G
Sbjct: 119 -AETAYANANPNYXPEHNVPEXHQYDF---TEYNFYDVG 153
>pdb|3FVC|A Chain A, Crystal Structure Of A Trimeric Variant Of The
Epstein-Barr Virus Glycoprotein B
Length = 663
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 245 WATMWGADTVMDLSTGRHIH----ETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWE 300
W T D+ + TG+ IH E + N+ V + ++ +E+ + +E
Sbjct: 278 WQTF---DSTIATETGKSIHFVTDEGTSSFVTNTTVGIELPDAFKCIEEQVNKTMHEKYE 334
Query: 301 VFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGI 338
+D + ++ + YF G+LL ++PLT + + +
Sbjct: 335 AVQDRYT-KGQEAITYFITSGGLLLAWLPLTPRSLATV 371
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,194,333
Number of Sequences: 62578
Number of extensions: 925800
Number of successful extensions: 1878
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1870
Number of HSP's gapped (non-prelim): 10
length of query: 667
length of database: 14,973,337
effective HSP length: 105
effective length of query: 562
effective length of database: 8,402,647
effective search space: 4722287614
effective search space used: 4722287614
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)