Query 005965
Match_columns 667
No_of_seqs 320 out of 707
Neff 3.0
Searched_HMMs 46136
Date Thu Mar 28 16:23:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005965.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005965hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02444 HMP-P synthase 100.0 1E-257 3E-262 2029.4 56.3 633 8-640 2-640 (642)
2 PRK09284 thiamine biosynthesis 100.0 9E-247 2E-251 1943.6 53.3 522 87-634 16-607 (607)
3 COG0422 ThiC Thiamine biosynth 100.0 3E-213 7E-218 1633.2 41.0 426 160-586 2-429 (432)
4 TIGR00190 thiC thiamine biosyn 100.0 9E-207 2E-211 1596.3 43.8 420 161-585 1-422 (423)
5 PRK13352 thiamine biosynthesis 100.0 3E-205 7E-210 1589.1 44.1 421 161-587 1-426 (431)
6 PF01964 ThiC: ThiC family; I 100.0 1E-204 3E-209 1581.0 37.9 418 162-584 1-420 (420)
7 PF13667 ThiC-associated: ThiC 99.9 3.5E-24 7.6E-29 184.0 2.5 65 88-156 1-78 (80)
8 cd00945 Aldolase_Class_I Class 91.4 7 0.00015 36.1 13.6 167 235-450 11-179 (201)
9 cd00381 IMPDH IMPDH: The catal 91.1 2.7 5.9E-05 44.5 12.0 75 223-322 85-165 (325)
10 cd01299 Met_dep_hydrolase_A Me 91.1 5.6 0.00012 40.6 13.8 175 241-419 46-268 (342)
11 PTZ00242 protein tyrosine phos 89.0 7.5 0.00016 37.5 12.1 137 234-418 27-166 (166)
12 PRK04165 acetyl-CoA decarbonyl 88.8 9.3 0.0002 43.0 14.2 146 296-457 101-269 (450)
13 TIGR03234 OH-pyruv-isom hydrox 88.1 2.5 5.4E-05 41.7 8.4 80 360-443 83-170 (254)
14 COG0422 ThiC Thiamine biosynth 87.5 0.26 5.6E-06 54.3 1.3 174 401-586 204-424 (432)
15 PF01261 AP_endonuc_2: Xylose 87.0 20 0.00044 32.9 13.2 110 310-443 37-157 (213)
16 cd00945 Aldolase_Class_I Class 87.0 3.5 7.5E-05 38.1 8.2 107 234-351 62-192 (201)
17 cd00019 AP2Ec AP endonuclease 85.3 6 0.00013 39.6 9.5 42 400-441 122-166 (279)
18 PRK04452 acetyl-CoA decarbonyl 85.1 14 0.0003 40.0 12.5 107 304-426 79-214 (319)
19 cd01297 D-aminoacylase D-amino 84.2 18 0.0004 38.8 13.1 28 261-288 122-150 (415)
20 PRK11165 diaminopimelate decar 83.9 44 0.00096 36.5 16.0 205 174-425 15-272 (420)
21 cd00959 DeoC 2-deoxyribose-5-p 83.9 4.4 9.4E-05 39.8 7.7 114 221-344 53-183 (203)
22 cd06828 PLPDE_III_DapDC Type I 83.6 26 0.00056 36.6 13.6 63 359-425 186-259 (373)
23 cd02810 DHOD_DHPD_FMN Dihydroo 82.1 8.2 0.00018 39.2 9.1 85 225-324 103-200 (289)
24 TIGR01306 GMP_reduct_2 guanosi 81.8 21 0.00046 38.6 12.4 152 170-386 44-210 (321)
25 PRK08227 autoinducer 2 aldolas 81.7 5.2 0.00011 42.0 7.6 145 280-482 26-177 (264)
26 TIGR01496 DHPS dihydropteroate 81.6 7 0.00015 40.3 8.5 182 295-480 18-239 (257)
27 TIGR03099 dCO2ase_PEP1 pyridox 81.3 81 0.0018 33.7 16.7 171 177-383 16-235 (398)
28 cd00739 DHPS DHPS subgroup of 81.2 6.5 0.00014 40.6 8.1 182 295-480 19-241 (257)
29 PRK05581 ribulose-phosphate 3- 80.5 58 0.0013 31.5 14.6 179 232-454 11-202 (220)
30 PF01261 AP_endonuc_2: Xylose 80.4 19 0.00041 33.2 10.1 76 360-436 26-109 (213)
31 cd00958 DhnA Class I fructose- 79.6 6.6 0.00014 38.7 7.3 96 218-321 57-164 (235)
32 cd00245 Glm_e Coenzyme B12-dep 79.4 2.7 5.8E-05 47.0 4.9 280 235-539 26-340 (428)
33 PRK09989 hypothetical protein; 79.4 9.9 0.00021 37.9 8.5 77 360-440 84-168 (258)
34 PRK07535 methyltetrahydrofolat 77.6 29 0.00062 36.1 11.5 123 294-428 19-167 (261)
35 TIGR02151 IPP_isom_2 isopenten 77.2 25 0.00054 37.5 11.1 136 223-386 116-266 (333)
36 PTZ00393 protein tyrosine phos 76.9 39 0.00086 35.5 12.2 115 244-405 110-227 (241)
37 PLN02274 inosine-5'-monophosph 76.9 21 0.00046 40.5 11.0 81 217-322 233-321 (505)
38 TIGR01949 AroFGH_arch predicte 76.5 21 0.00046 36.2 10.0 75 237-323 155-230 (258)
39 cd04743 NPD_PKS 2-Nitropropane 76.4 6.3 0.00014 42.5 6.5 106 363-482 71-208 (320)
40 cd02803 OYE_like_FMN_family Ol 75.4 55 0.0012 33.9 12.7 156 236-419 75-246 (327)
41 PRK12677 xylose isomerase; Pro 75.3 9.6 0.00021 41.6 7.6 121 241-381 35-179 (384)
42 TIGR03128 RuMP_HxlA 3-hexulose 75.2 53 0.0011 31.7 11.9 118 305-485 68-188 (206)
43 cd06831 PLPDE_III_ODC_like_AZI 75.1 1.3E+02 0.0028 32.9 16.0 95 296-423 146-248 (394)
44 cd02811 IDI-2_FMN Isopentenyl- 74.7 57 0.0012 34.7 13.0 137 223-386 115-267 (326)
45 PRK05458 guanosine 5'-monophos 74.6 37 0.00081 36.8 11.7 109 170-322 47-170 (326)
46 cd03315 MLE_like Muconate lact 74.3 90 0.002 31.5 13.7 142 220-420 74-237 (265)
47 PF01408 GFO_IDH_MocA: Oxidore 73.9 8.6 0.00019 33.2 5.7 92 333-447 26-117 (120)
48 PRK09989 hypothetical protein; 73.8 34 0.00073 34.2 10.5 136 222-385 3-147 (258)
49 cd04740 DHOD_1B_like Dihydroor 73.7 18 0.00039 37.0 8.8 83 298-418 100-183 (296)
50 PRK09061 D-glutamate deacylase 73.6 92 0.002 35.1 14.9 114 298-460 164-286 (509)
51 TIGR01163 rpe ribulose-phospha 73.5 85 0.0018 30.0 12.7 180 232-454 6-197 (210)
52 PRK09722 allulose-6-phosphate 73.0 71 0.0015 33.0 12.7 181 220-450 2-197 (229)
53 COG1082 IolE Sugar phosphate i 72.9 27 0.00059 34.2 9.5 159 240-428 18-184 (274)
54 cd02803 OYE_like_FMN_family Ol 72.9 47 0.001 34.4 11.5 78 297-403 225-302 (327)
55 cd00429 RPE Ribulose-5-phospha 71.0 98 0.0021 29.5 15.0 78 232-324 7-91 (211)
56 PRK13404 dihydropyrimidinase; 70.8 49 0.0011 36.8 11.8 126 298-464 133-273 (477)
57 TIGR03006 pepcterm_polyde poly 70.7 15 0.00033 38.2 7.5 115 354-493 21-151 (265)
58 TIGR02318 phosphono_phnM phosp 70.6 13 0.00028 40.0 7.2 86 359-459 207-304 (376)
59 PTZ00170 D-ribulose-5-phosphat 70.4 7.1 0.00015 39.4 4.9 91 218-326 4-101 (228)
60 TIGR00542 hxl6Piso_put hexulos 70.2 9.3 0.0002 38.4 5.7 79 241-321 20-115 (279)
61 cd02931 ER_like_FMN Enoate red 69.8 30 0.00065 37.6 9.8 119 237-368 82-213 (382)
62 cd00958 DhnA Class I fructose- 69.8 29 0.00063 34.3 8.9 75 237-323 142-217 (235)
63 TIGR03151 enACPred_II putative 69.3 40 0.00087 35.7 10.3 117 363-502 76-210 (307)
64 PRK05437 isopentenyl pyrophosp 68.9 41 0.00089 36.3 10.5 135 223-386 123-273 (352)
65 cd00950 DHDPS Dihydrodipicolin 68.9 59 0.0013 33.2 11.1 109 295-447 16-130 (284)
66 TIGR00693 thiE thiamine-phosph 67.1 48 0.001 31.7 9.5 21 299-319 12-32 (196)
67 TIGR00542 hxl6Piso_put hexulos 65.4 51 0.0011 33.2 9.8 80 359-440 92-172 (279)
68 PRK08649 inosine 5-monophospha 65.3 87 0.0019 34.4 12.2 80 243-322 64-163 (368)
69 cd03316 MR_like Mandelate race 65.3 1.3E+02 0.0029 31.5 13.1 154 218-423 124-300 (357)
70 COG1830 FbaB DhnA-type fructos 64.7 22 0.00048 37.9 7.3 135 300-481 43-184 (265)
71 PRK11613 folP dihydropteroate 64.5 2E+02 0.0044 30.7 18.3 24 234-258 35-58 (282)
72 TIGR00587 nfo apurinic endonuc 64.4 7.9 0.00017 39.5 4.0 143 241-386 15-185 (274)
73 PRK07226 fructose-bisphosphate 64.4 28 0.0006 35.8 7.8 161 278-454 21-207 (267)
74 TIGR00126 deoC deoxyribose-pho 63.9 20 0.00044 36.4 6.6 117 220-343 53-183 (211)
75 PRK01060 endonuclease IV; Prov 63.5 13 0.00028 37.2 5.2 79 243-323 18-112 (281)
76 TIGR01503 MthylAspMut_E methyl 63.5 37 0.00081 38.9 9.1 186 349-552 175-393 (480)
77 PRK09206 pyruvate kinase; Prov 62.8 41 0.0009 38.2 9.4 95 294-419 167-276 (470)
78 TIGR03586 PseI pseudaminic aci 62.6 1.1E+02 0.0023 33.3 12.1 127 298-439 15-158 (327)
79 cd00127 DSPc Dual specificity 62.0 26 0.00056 31.0 6.3 94 248-372 25-120 (139)
80 PRK06843 inosine 5-monophospha 62.0 1.7E+02 0.0037 32.9 13.8 80 222-328 143-228 (404)
81 COG0157 NadC Nicotinate-nucleo 61.9 14 0.00031 39.5 5.4 66 240-321 198-263 (280)
82 PRK08883 ribulose-phosphate 3- 61.6 1.3E+02 0.0029 30.6 12.0 176 230-451 8-196 (220)
83 PRK08323 phenylhydantoinase; V 61.3 2.3E+02 0.005 30.7 14.3 67 244-321 76-149 (459)
84 COG1082 IolE Sugar phosphate i 60.9 62 0.0014 31.8 9.3 68 362-430 46-113 (274)
85 PRK13209 L-xylulose 5-phosphat 60.9 46 0.00099 33.4 8.5 81 360-442 98-179 (283)
86 PRK09997 hydroxypyruvate isome 60.5 76 0.0017 31.7 9.9 78 360-440 84-168 (258)
87 PRK11815 tRNA-dihydrouridine s 60.1 1.3E+02 0.0029 32.2 12.2 26 297-322 148-173 (333)
88 PF01487 DHquinase_I: Type I 3 59.3 29 0.00063 34.3 6.7 163 233-421 6-181 (224)
89 cd02801 DUS_like_FMN Dihydrour 58.9 1.4E+02 0.0031 29.0 11.2 23 300-322 138-160 (231)
90 cd03319 L-Ala-DL-Glu_epimerase 58.9 1.8E+02 0.0039 30.2 12.6 86 220-317 123-208 (316)
91 PRK12595 bifunctional 3-deoxy- 58.5 79 0.0017 34.6 10.3 116 298-447 130-266 (360)
92 PRK12677 xylose isomerase; Pro 58.4 31 0.00067 37.8 7.3 82 359-441 112-204 (384)
93 PRK15446 phosphonate metabolis 57.9 60 0.0013 35.0 9.3 56 355-419 208-273 (383)
94 smart00518 AP2Ec AP endonuclea 57.5 2.1E+02 0.0046 28.6 12.9 114 302-442 12-129 (273)
95 TIGR00284 dihydropteroate synt 57.2 1.1E+02 0.0024 35.2 11.5 127 243-418 221-348 (499)
96 TIGR00284 dihydropteroate synt 56.9 3.5E+02 0.0075 31.3 15.3 47 210-260 140-187 (499)
97 cd02809 alpha_hydroxyacid_oxid 56.9 2.5E+02 0.0055 29.3 15.7 175 235-485 79-258 (299)
98 PTZ00293 thymidine kinase; Pro 56.9 24 0.00051 36.2 5.8 89 300-421 19-110 (211)
99 TIGR03572 WbuZ glycosyl amidat 56.7 54 0.0012 32.4 8.1 110 242-384 88-207 (232)
100 PTZ00372 endonuclease 4-like p 56.6 5.5 0.00012 44.3 1.3 153 243-401 147-329 (413)
101 TIGR00612 ispG_gcpE 1-hydroxy- 56.3 68 0.0015 35.5 9.3 212 214-500 13-243 (346)
102 smart00195 DSPc Dual specifici 56.3 66 0.0014 28.8 8.0 112 245-402 21-134 (138)
103 TIGR02631 xylA_Arthro xylose i 56.3 1.4E+02 0.003 32.9 11.8 158 240-427 35-221 (382)
104 TIGR01928 menC_lowGC/arch o-su 55.7 2.7E+02 0.0059 29.4 13.6 139 298-439 132-296 (324)
105 cd03323 D-glucarate_dehydratas 55.6 1.3E+02 0.0028 33.0 11.3 129 298-427 168-325 (395)
106 PRK07028 bifunctional hexulose 55.1 2.6E+02 0.0057 30.7 13.6 171 231-485 10-192 (430)
107 cd00537 MTHFR Methylenetetrahy 54.7 23 0.0005 36.1 5.3 56 230-323 140-195 (274)
108 cd01302 Cyclic_amidohydrolases 54.7 67 0.0015 33.8 8.9 148 243-428 30-185 (337)
109 TIGR01761 thiaz-red thiazoliny 54.6 33 0.00071 37.2 6.7 34 333-368 28-61 (343)
110 COG1412 Uncharacterized protei 53.7 13 0.00028 35.9 3.2 15 405-419 108-122 (136)
111 cd00423 Pterin_binding Pterin 53.7 1.2E+02 0.0027 31.0 10.3 141 295-440 19-191 (258)
112 PLN02334 ribulose-phosphate 3- 53.1 39 0.00084 33.8 6.5 78 230-322 13-97 (229)
113 cd03316 MR_like Mandelate race 52.9 1.2E+02 0.0026 31.9 10.2 26 298-323 139-164 (357)
114 cd01297 D-aminoacylase D-amino 52.9 2.3E+02 0.0051 30.6 12.7 203 243-491 72-288 (415)
115 TIGR01361 DAHP_synth_Bsub phos 52.9 95 0.0021 32.4 9.5 158 298-489 37-238 (260)
116 cd01306 PhnM PhnM is believed 52.7 17 0.00036 39.0 4.1 110 296-419 91-222 (325)
117 cd03174 DRE_TIM_metallolyase D 52.2 1.2E+02 0.0025 30.1 9.6 140 295-446 14-193 (265)
118 PRK06106 nicotinate-nucleotide 52.2 28 0.0006 37.1 5.6 63 241-321 205-267 (281)
119 PLN02520 bifunctional 3-dehydr 51.4 79 0.0017 36.0 9.3 92 220-321 22-118 (529)
120 PRK07565 dihydroorotate dehydr 51.3 92 0.002 33.0 9.2 84 224-324 105-201 (334)
121 PF01207 Dus: Dihydrouridine s 50.7 14 0.00031 38.8 3.3 51 263-322 110-160 (309)
122 cd04724 Tryptophan_synthase_al 50.6 1.3E+02 0.0028 30.7 9.8 164 233-448 10-192 (242)
123 PRK09856 fructoselysine 3-epim 50.5 1.2E+02 0.0026 30.2 9.5 78 360-442 89-173 (275)
124 TIGR02631 xylA_Arthro xylose i 50.0 28 0.00062 38.0 5.4 142 298-440 30-204 (382)
125 PRK09237 dihydroorotase; Provi 50.0 25 0.00054 37.1 4.9 167 244-431 75-255 (380)
126 cd01305 archeal_chlorohydrolas 50.0 2.8E+02 0.0061 27.8 13.8 102 302-442 127-242 (263)
127 PTZ00314 inosine-5'-monophosph 49.8 1.1E+02 0.0023 34.9 9.9 78 220-322 229-314 (495)
128 cd01317 DHOase_IIa Dihydroorot 49.7 41 0.00089 35.7 6.4 156 244-424 39-219 (374)
129 cd00377 ICL_PEPM Members of th 49.1 55 0.0012 33.5 7.0 76 234-326 157-232 (243)
130 cd00959 DeoC 2-deoxyribose-5-p 48.8 2.8E+02 0.006 27.4 15.1 167 236-454 15-185 (203)
131 cd00740 MeTr MeTr subgroup of 48.7 1.2E+02 0.0027 31.4 9.5 121 295-428 21-171 (252)
132 PRK06886 hypothetical protein; 48.5 1.5E+02 0.0032 32.1 10.3 96 279-379 46-180 (329)
133 PRK00507 deoxyribose-phosphate 48.4 42 0.00092 34.2 6.0 120 218-343 55-187 (221)
134 cd00530 PTE Phosphotriesterase 48.0 3.1E+02 0.0067 27.7 15.0 78 234-316 29-113 (293)
135 TIGR01859 fruc_bis_ald_ fructo 47.3 13 0.00028 39.1 2.2 123 240-403 87-222 (282)
136 PRK01207 methionine synthase; 47.2 17 0.00036 39.7 3.1 90 301-422 38-128 (343)
137 TIGR02478 6PF1K_euk 6-phosphof 46.4 24 0.00051 42.1 4.4 110 291-414 9-138 (745)
138 PRK07094 biotin synthase; Prov 46.0 2.9E+02 0.0063 28.7 11.8 28 296-323 69-96 (323)
139 TIGR03470 HpnH hopanoid biosyn 45.7 1.3E+02 0.0028 31.9 9.2 130 295-451 57-199 (318)
140 PRK07226 fructose-bisphosphate 45.1 83 0.0018 32.4 7.6 100 238-349 160-261 (267)
141 PRK05567 inosine 5'-monophosph 44.7 1.9E+02 0.0041 32.5 10.8 75 220-319 216-296 (486)
142 PRK06354 pyruvate kinase; Prov 44.7 1.3E+02 0.0027 35.4 9.7 97 294-419 173-282 (590)
143 PRK09997 hydroxypyruvate isome 44.6 2.4E+02 0.0051 28.3 10.5 86 302-426 17-110 (258)
144 TIGR03234 OH-pyruv-isom hydrox 44.4 1.6E+02 0.0034 29.2 9.2 64 362-427 40-110 (254)
145 PRK06978 nicotinate-nucleotide 44.4 46 0.00099 35.9 5.8 64 240-321 215-278 (294)
146 PRK10415 tRNA-dihydrouridine s 44.4 91 0.002 33.2 7.9 23 300-322 149-171 (321)
147 PRK13210 putative L-xylulose 5 44.2 1.8E+02 0.0038 29.1 9.6 91 360-457 93-184 (284)
148 PRK13813 orotidine 5'-phosphat 43.7 1E+02 0.0022 30.2 7.7 59 307-373 74-138 (215)
149 cd02932 OYE_YqiM_FMN Old yello 43.7 1.5E+02 0.0032 31.5 9.3 28 296-323 237-264 (336)
150 PRK08185 hypothetical protein; 43.4 29 0.00062 36.9 4.1 32 239-270 80-115 (283)
151 cd04724 Tryptophan_synthase_al 43.4 1.6E+02 0.0036 30.0 9.3 59 357-432 86-147 (242)
152 TIGR01302 IMP_dehydrog inosine 43.3 2.9E+02 0.0063 30.9 11.9 51 402-459 315-367 (450)
153 cd04733 OYE_like_2_FMN Old yel 43.3 3.2E+02 0.0069 29.1 11.7 160 235-420 79-254 (338)
154 PLN02716 nicotinate-nucleotide 42.9 46 0.001 36.1 5.6 65 240-321 213-291 (308)
155 TIGR01949 AroFGH_arch predicte 42.4 96 0.0021 31.7 7.5 114 278-419 18-141 (258)
156 PRK09856 fructoselysine 3-epim 42.3 3.6E+02 0.0079 26.9 11.6 64 362-426 48-115 (275)
157 PRK08005 epimerase; Validated 42.3 47 0.001 33.9 5.3 122 222-379 2-135 (210)
158 cd00288 Pyruvate_Kinase Pyruva 41.8 1.5E+02 0.0033 33.9 9.5 97 294-419 169-277 (480)
159 TIGR02033 D-hydantoinase D-hyd 41.7 4.8E+02 0.01 28.1 13.7 18 243-260 77-94 (454)
160 KOG3111 D-ribulose-5-phosphate 41.7 64 0.0014 33.7 6.1 157 231-427 14-180 (224)
161 PRK09016 quinolinate phosphori 41.7 52 0.0011 35.4 5.7 64 240-321 218-281 (296)
162 PRK13207 ureC urease subunit a 41.6 98 0.0021 36.2 8.2 57 303-400 203-259 (568)
163 PRK06852 aldolase; Validated 41.5 35 0.00076 36.8 4.4 181 301-533 60-253 (304)
164 PRK05286 dihydroorotate dehydr 41.5 1.2E+02 0.0026 32.6 8.3 105 296-425 221-329 (344)
165 PF00265 TK: Thymidine kinase; 41.2 4.6 0.0001 39.4 -1.9 92 300-421 16-110 (176)
166 PRK03906 mannonate dehydratase 40.9 1.9E+02 0.0041 32.2 10.0 135 278-420 62-233 (385)
167 TIGR02026 BchE magnesium-proto 40.9 2.5E+02 0.0054 31.6 11.0 132 293-440 218-365 (497)
168 PLN02819 lysine-ketoglutarate 40.9 40 0.00086 41.8 5.3 81 358-465 633-714 (1042)
169 PF00834 Ribul_P_3_epim: Ribul 40.8 65 0.0014 32.4 6.0 169 222-431 1-181 (201)
170 cd06660 Aldo_ket_red Aldo-keto 40.1 3.9E+02 0.0085 26.7 12.9 148 235-388 27-210 (285)
171 PRK05848 nicotinate-nucleotide 40.0 50 0.0011 34.9 5.2 68 239-321 191-258 (273)
172 smart00518 AP2Ec AP endonuclea 39.9 13 0.00028 37.0 0.9 83 241-324 14-108 (273)
173 PF02126 PTE: Phosphotriestera 39.4 9.8 0.00021 40.5 -0.0 90 235-326 36-129 (308)
174 PRK06543 nicotinate-nucleotide 39.2 54 0.0012 35.0 5.3 63 241-321 204-266 (281)
175 PRK05826 pyruvate kinase; Prov 38.7 1E+02 0.0022 35.1 7.6 94 295-419 169-277 (465)
176 PRK08745 ribulose-phosphate 3- 38.4 4.6E+02 0.01 27.0 13.9 186 222-454 5-203 (223)
177 PRK06801 hypothetical protein; 38.4 25 0.00054 37.3 2.7 80 240-322 87-178 (286)
178 TIGR02319 CPEP_Pphonmut carbox 37.9 1.3E+02 0.0027 32.4 7.8 81 234-329 162-242 (294)
179 TIGR01856 hisJ_fam histidinol 37.6 34 0.00073 34.7 3.5 60 357-426 181-241 (253)
180 PRK07315 fructose-bisphosphate 37.6 26 0.00056 37.2 2.7 73 240-322 89-175 (293)
181 PF00728 Glyco_hydro_20: Glyco 37.4 30 0.00066 35.7 3.1 27 296-322 14-40 (351)
182 cd04738 DHOD_2_like Dihydrooro 37.3 1.2E+02 0.0026 32.2 7.6 87 296-402 212-300 (327)
183 cd04739 DHOD_like Dihydroorota 37.1 88 0.0019 33.3 6.5 175 235-469 110-302 (325)
184 PRK03170 dihydrodipicolinate s 36.9 4.9E+02 0.011 26.9 11.7 104 295-442 17-124 (292)
185 PRK15072 bifunctional D-altron 36.8 2.5E+02 0.0054 30.7 10.0 65 356-420 238-314 (404)
186 PRK00366 ispG 4-hydroxy-3-meth 36.8 70 0.0015 35.6 5.8 206 213-485 20-243 (360)
187 PRK10076 pyruvate formate lyas 36.3 60 0.0013 32.9 4.9 56 361-430 19-83 (213)
188 cd04732 HisA HisA. Phosphorib 36.0 30 0.00065 33.9 2.7 111 240-385 85-201 (234)
189 cd08616 PI-PLCXD1c Catalytic d 36.0 1.6E+02 0.0034 31.2 8.1 93 305-420 63-173 (290)
190 PRK13523 NADPH dehydrogenase N 36.0 4.2E+02 0.0091 28.7 11.4 159 235-423 78-249 (337)
191 TIGR00737 nifR3_yhdG putative 35.9 1.1E+02 0.0024 32.1 7.0 20 302-321 149-168 (319)
192 PRK09875 putative hydrolase; P 35.9 3.5E+02 0.0075 28.9 10.6 88 234-323 31-122 (292)
193 PRK06559 nicotinate-nucleotide 35.7 76 0.0016 34.2 5.8 63 241-321 208-270 (290)
194 PRK01130 N-acetylmannosamine-6 35.6 1.6E+02 0.0035 29.0 7.7 61 242-320 80-146 (221)
195 PF12244 DUF3606: Protein of u 35.2 38 0.00083 28.1 2.8 23 174-196 21-43 (57)
196 PRK08417 dihydroorotase; Provi 35.2 94 0.002 33.4 6.5 60 395-497 176-238 (386)
197 PRK05927 hypothetical protein; 34.9 38 0.00083 36.6 3.5 49 184-256 255-303 (350)
198 PRK07535 methyltetrahydrofolat 34.3 4.6E+02 0.0099 27.5 11.0 149 234-419 22-194 (261)
199 COG0331 FabD (acyl-carrier-pro 34.1 1.8E+02 0.0039 31.4 8.3 112 181-317 135-259 (310)
200 PRK11320 prpB 2-methylisocitra 33.9 2.1E+02 0.0045 30.8 8.6 77 235-326 164-240 (292)
201 PRK13317 pantothenate kinase; 33.7 2.1E+02 0.0045 30.3 8.5 129 331-474 116-273 (277)
202 TIGR02317 prpB methylisocitrat 33.6 34 0.00075 36.3 2.9 80 235-329 159-238 (285)
203 cd04730 NPD_like 2-Nitropropan 33.4 4.7E+02 0.01 25.6 12.8 85 405-501 113-204 (236)
204 PRK05742 nicotinate-nucleotide 33.3 99 0.0021 32.9 6.1 63 241-321 200-262 (277)
205 TIGR02482 PFKA_ATP 6-phosphofr 33.3 45 0.00097 35.7 3.7 70 302-376 18-93 (301)
206 PRK12858 tagatose 1,6-diphosph 32.9 3.1E+02 0.0066 30.1 9.8 155 298-455 47-253 (340)
207 PRK00957 methionine synthase; 32.8 80 0.0017 32.8 5.3 176 300-489 36-227 (305)
208 TIGR03128 RuMP_HxlA 3-hexulose 32.7 92 0.002 30.1 5.4 65 243-323 69-136 (206)
209 PRK07328 histidinol-phosphatas 32.3 1.1E+02 0.0023 31.3 6.1 136 255-428 87-235 (269)
210 PRK02412 aroD 3-dehydroquinate 32.2 1.1E+02 0.0025 31.4 6.3 99 213-321 9-117 (253)
211 cd06568 GH20_SpHex_like A subg 32.0 30 0.00065 36.9 2.2 24 402-425 76-101 (329)
212 cd02929 TMADH_HD_FMN Trimethyl 32.0 2.2E+02 0.0047 31.0 8.6 122 236-370 81-214 (370)
213 COG2070 Dioxygenases related t 31.9 5.3E+02 0.011 28.2 11.4 142 356-521 89-253 (336)
214 TIGR03826 YvyF flagellar opero 31.9 56 0.0012 31.7 3.7 33 175-207 48-80 (137)
215 PRK07896 nicotinate-nucleotide 31.9 84 0.0018 33.7 5.4 63 242-321 211-275 (289)
216 cd00331 IGPS Indole-3-glycerol 31.7 1.2E+02 0.0027 29.7 6.2 79 237-317 31-125 (217)
217 TIGR00288 conserved hypothetic 31.4 1.6E+02 0.0035 29.3 6.9 41 382-422 79-137 (160)
218 TIGR00347 bioD dethiobiotin sy 31.3 2E+02 0.0044 26.6 7.2 70 406-483 92-164 (166)
219 PRK07572 cytosine deaminase; V 31.2 2.1E+02 0.0045 31.1 8.3 44 360-416 190-235 (426)
220 TIGR03855 NAD_NadX aspartate d 31.2 56 0.0012 33.5 3.8 176 335-556 4-185 (229)
221 PF03060 NMO: Nitronate monoox 31.2 40 0.00087 35.7 2.9 105 394-514 126-247 (330)
222 PRK13206 ureC urease subunit a 31.1 1.7E+02 0.0036 34.5 7.9 78 304-426 210-289 (573)
223 PRK12361 hypothetical protein; 30.8 1.5E+02 0.0033 33.5 7.4 122 239-403 112-233 (547)
224 PF03102 NeuB: NeuB family; I 30.8 39 0.00084 35.1 2.7 185 243-480 2-198 (241)
225 KOG1282 Serine carboxypeptidas 30.7 51 0.0011 37.4 3.7 32 417-448 420-452 (454)
226 PRK06740 histidinol-phosphatas 30.1 1.1E+02 0.0023 33.0 5.8 85 233-323 121-224 (331)
227 cd04722 TIM_phosphate_binding 30.0 4.2E+02 0.009 23.9 10.3 132 300-484 12-144 (200)
228 PRK08091 ribulose-phosphate 3- 29.8 6.7E+02 0.014 26.2 13.7 187 220-452 12-209 (228)
229 PF07302 AroM: AroM protein; 29.6 72 0.0016 33.2 4.3 88 243-330 80-196 (221)
230 cd02742 GH20_hexosaminidase Be 29.6 35 0.00075 35.7 2.1 27 296-322 12-38 (303)
231 PRK07428 nicotinate-nucleotide 29.5 1E+02 0.0023 32.9 5.6 68 240-324 206-275 (288)
232 COG2513 PrpB PEP phosphonomuta 29.2 51 0.0011 35.6 3.3 120 236-373 165-287 (289)
233 PRK01060 endonuclease IV; Prov 29.1 5.3E+02 0.011 25.9 10.2 99 301-426 13-114 (281)
234 cd07197 nitrilase Nitrilase su 28.8 1.4E+02 0.0031 28.8 6.0 67 300-382 18-84 (253)
235 TIGR01093 aroD 3-dehydroquinat 28.2 4.1E+02 0.0089 26.7 9.2 195 233-460 8-218 (228)
236 PF02581 TMP-TENI: Thiamine mo 28.2 1E+02 0.0022 29.7 4.8 55 297-381 9-63 (180)
237 TIGR02320 PEP_mutase phosphoen 28.1 1.6E+02 0.0035 31.3 6.7 76 235-326 167-246 (285)
238 cd00502 DHQase_I Type I 3-dehy 28.1 1.7E+02 0.0038 29.1 6.6 67 250-322 24-98 (225)
239 cd01948 EAL EAL domain. This d 27.8 1.4E+02 0.003 28.4 5.6 60 363-422 134-210 (240)
240 COG1387 HIS2 Histidinol phosph 27.5 5.4E+02 0.012 26.4 10.0 94 295-427 106-199 (237)
241 PRK13308 ureC urease subunit a 27.2 1.7E+02 0.0037 34.4 7.1 120 244-426 149-283 (569)
242 PRK08255 salicylyl-CoA 5-hydro 27.1 3.2E+02 0.007 32.5 9.5 108 293-424 537-662 (765)
243 PRK08385 nicotinate-nucleotide 27.1 82 0.0018 33.5 4.3 68 240-321 192-260 (278)
244 PF01729 QRPTase_C: Quinolinat 27.0 54 0.0012 32.3 2.8 63 241-319 91-154 (169)
245 PRK02227 hypothetical protein; 26.9 2.2E+02 0.0048 30.1 7.3 157 240-421 10-187 (238)
246 cd04734 OYE_like_3_FMN Old yel 26.6 8E+02 0.017 26.4 11.6 154 300-482 141-314 (343)
247 TIGR02826 RNR_activ_nrdG3 anae 26.5 1.5E+02 0.0031 28.6 5.5 71 362-456 47-122 (147)
248 TIGR00737 nifR3_yhdG putative 26.4 7.8E+02 0.017 25.9 15.3 91 298-418 73-164 (319)
249 PRK07028 bifunctional hexulose 26.3 7.2E+02 0.016 27.4 11.4 68 242-324 73-142 (430)
250 TIGR00555 panK_eukar pantothen 26.3 1.2E+02 0.0025 32.5 5.2 126 331-471 121-278 (279)
251 TIGR02967 guan_deamin guanine 26.3 3.4E+02 0.0073 28.9 8.7 98 295-419 181-293 (401)
252 PF01791 DeoC: DeoC/LacD famil 26.3 40 0.00087 33.7 1.8 71 243-324 152-232 (236)
253 COG1099 Predicted metal-depend 26.2 1.2E+02 0.0026 32.4 5.2 78 360-442 45-151 (254)
254 cd06570 GH20_chitobiase-like_1 26.2 54 0.0012 35.0 2.8 26 296-321 14-39 (311)
255 PF10515 APP_amyloid: beta-amy 26.1 13 0.00027 31.2 -1.4 18 347-364 35-52 (52)
256 cd02810 DHOD_DHPD_FMN Dihydroo 26.1 2.3E+02 0.0049 29.0 7.1 82 298-419 109-194 (289)
257 PF01180 DHO_dh: Dihydroorotat 25.9 83 0.0018 32.5 4.1 91 219-318 95-194 (295)
258 COG2120 Uncharacterized protei 25.9 2.2E+02 0.0048 29.1 7.0 83 375-466 44-131 (237)
259 cd04726 KGPDC_HPS 3-Keto-L-gul 25.8 5.9E+02 0.013 24.3 9.5 17 306-322 70-86 (202)
260 PRK07259 dihydroorotate dehydr 25.8 7.7E+02 0.017 25.6 11.6 25 299-323 168-192 (301)
261 TIGR02708 L_lactate_ox L-lacta 25.8 4.2E+02 0.009 29.5 9.4 37 240-277 149-186 (367)
262 PRK08508 biotin synthase; Prov 25.7 7.3E+02 0.016 25.9 10.8 23 297-319 40-62 (279)
263 cd06839 PLPDE_III_Btrk_like Ty 25.5 8.2E+02 0.018 25.9 13.0 26 297-322 151-177 (382)
264 COG0269 SgbH 3-hexulose-6-phos 25.4 6.1E+02 0.013 26.7 10.0 113 243-399 73-206 (217)
265 cd01482 vWA_collagen_alphaI-XI 25.4 2.4E+02 0.0052 26.2 6.6 23 300-322 117-139 (164)
266 cd03318 MLE Muconate Lactonizi 25.4 8.5E+02 0.018 26.0 11.9 120 217-380 160-296 (365)
267 cd01292 metallo-dependent_hydr 24.5 3.3E+02 0.0072 25.6 7.4 106 241-379 39-151 (275)
268 PRK06267 hypothetical protein; 24.2 9.3E+02 0.02 26.0 13.5 33 484-516 210-242 (350)
269 cd01298 ATZ_TRZ_like TRZ/ATZ f 24.1 2.7E+02 0.0058 29.0 7.4 19 242-260 106-124 (411)
270 COG1387 HIS2 Histidinol phosph 24.1 78 0.0017 32.3 3.4 35 363-397 175-210 (237)
271 PF02449 Glyco_hydro_42: Beta- 23.8 91 0.002 33.3 4.0 61 295-379 5-65 (374)
272 PRK05283 deoxyribose-phosphate 23.8 1.8E+02 0.004 30.8 6.1 98 220-322 66-169 (257)
273 cd00764 Eukaryotic_PFK Phospho 23.7 75 0.0016 38.3 3.7 80 290-376 397-480 (762)
274 TIGR01037 pyrD_sub1_fam dihydr 23.5 2.6E+02 0.0057 28.9 7.1 27 298-324 167-193 (300)
275 cd00363 PFK Phosphofructokinas 23.5 93 0.002 33.6 4.0 74 302-380 19-100 (338)
276 TIGR03569 NeuB_NnaB N-acetylne 23.4 3E+02 0.0065 30.1 7.7 78 234-321 13-97 (329)
277 PRK13523 NADPH dehydrogenase N 23.4 87 0.0019 33.7 3.7 75 243-323 148-250 (337)
278 TIGR02109 PQQ_syn_pqqE coenzym 23.3 2.1E+02 0.0045 30.2 6.4 29 294-322 34-62 (358)
279 cd06543 GH18_PF-ChiA-like PF-C 23.2 2.4E+02 0.0051 30.1 6.8 90 373-467 68-165 (294)
280 PRK03202 6-phosphofructokinase 23.1 91 0.002 33.6 3.8 75 302-381 20-102 (320)
281 PLN02795 allantoinase 23.0 1.5E+02 0.0033 33.4 5.6 101 361-497 212-329 (505)
282 PF03746 LamB_YcsF: LamB/YcsF 23.0 69 0.0015 33.8 2.8 78 220-311 1-91 (242)
283 TIGR01048 lysA diaminopimelate 22.9 9.8E+02 0.021 25.8 15.1 28 296-323 170-198 (417)
284 cd03321 mandelate_racemase Man 22.9 1.6E+02 0.0035 31.3 5.6 121 298-418 141-292 (355)
285 PRK00043 thiE thiamine-phospha 22.7 6.6E+02 0.014 24.1 9.2 121 298-450 19-167 (212)
286 PF07503 zf-HYPF: HypF finger; 22.6 35 0.00077 26.2 0.5 10 566-575 22-31 (35)
287 KOG2499 Beta-N-acetylhexosamin 22.6 68 0.0015 37.2 2.9 24 403-426 252-277 (542)
288 cd04735 OYE_like_4_FMN Old yel 22.3 6.8E+02 0.015 27.0 10.1 145 294-454 131-295 (353)
289 TIGR00735 hisF imidazoleglycer 22.2 3.9E+02 0.0086 27.2 8.0 78 241-321 87-176 (254)
290 cd06563 GH20_chitobiase-like T 22.2 66 0.0014 34.5 2.6 26 296-321 14-39 (357)
291 TIGR02764 spore_ybaN_pdaB poly 22.2 7E+02 0.015 23.9 11.3 110 186-322 47-160 (191)
292 TIGR02483 PFK_mixed phosphofru 22.1 88 0.0019 33.7 3.5 73 303-380 19-102 (324)
293 cd04740 DHOD_1B_like Dihydroor 22.1 4.5E+02 0.0098 27.1 8.4 77 235-324 100-190 (296)
294 PLN02537 diaminopimelate decar 21.9 1E+03 0.023 25.8 14.4 96 296-424 162-269 (410)
295 cd00952 CHBPH_aldolase Trans-o 21.8 7E+02 0.015 26.4 9.9 111 295-448 24-140 (309)
296 KOG0846 Mitochondrial/chloropl 21.8 30 0.00065 37.0 -0.0 38 391-428 112-149 (274)
297 cd01822 Lysophospholipase_L1_l 21.7 4.8E+02 0.01 23.7 7.7 72 362-442 55-132 (177)
298 cd00764 Eukaryotic_PFK Phospho 21.6 74 0.0016 38.4 3.0 117 291-421 12-148 (762)
299 PRK06846 putative deaminase; V 21.5 6.3E+02 0.014 27.3 9.7 40 361-421 267-310 (410)
300 PRK04123 ribulokinase; Provisi 21.5 4.5E+02 0.0098 29.6 8.9 123 337-477 329-488 (548)
301 cd00019 AP2Ec AP endonuclease 21.5 8.5E+02 0.018 24.6 13.0 66 361-427 45-111 (279)
302 PF13481 AAA_25: AAA domain; P 21.5 1.6E+02 0.0035 27.5 4.7 58 360-419 126-184 (193)
303 TIGR03550 F420_cofG 7,8-dideme 21.4 1E+03 0.022 25.4 15.5 31 296-326 34-64 (322)
304 TIGR01224 hutI imidazoloneprop 21.4 5.5E+02 0.012 26.9 9.0 107 295-434 192-305 (377)
305 PRK09613 thiH thiamine biosynt 21.2 3.3E+02 0.0072 31.1 7.8 178 295-529 113-330 (469)
306 PF06368 Met_asp_mut_E: Methyl 21.2 1.3E+02 0.0028 34.5 4.6 179 349-544 136-347 (441)
307 CHL00120 psaL photosystem I su 21.2 29 0.00063 34.1 -0.2 45 444-489 60-105 (143)
308 PRK07259 dihydroorotate dehydr 21.0 4.3E+02 0.0093 27.4 8.1 83 298-418 102-186 (301)
309 TIGR03212 uraD_N-term-dom puta 21.0 1.6E+02 0.0034 31.4 5.0 114 362-497 78-212 (297)
310 TIGR02478 6PF1K_euk 6-phosphof 21.0 81 0.0017 37.8 3.2 79 291-376 398-480 (745)
311 cd03315 MLE_like Muconate lact 21.0 8.8E+02 0.019 24.6 11.3 108 237-380 113-237 (265)
312 PRK13209 L-xylulose 5-phosphat 20.9 4.5E+02 0.0099 26.4 8.0 101 295-423 19-121 (283)
313 PF13240 zinc_ribbon_2: zinc-r 20.9 42 0.00092 23.4 0.6 10 564-573 12-21 (23)
314 TIGR03612 RutA pyrimidine util 20.7 69 0.0015 34.3 2.4 43 298-340 307-350 (355)
315 cd00763 Bacterial_PFK Phosphof 20.6 1E+02 0.0022 33.2 3.6 84 291-380 9-100 (317)
316 PRK07213 chlorohydrolase; Prov 20.5 1.1E+03 0.023 25.3 12.0 97 295-420 174-282 (375)
317 cd02911 arch_FMN Archeal FMN-b 20.4 3.4E+02 0.0073 27.8 7.0 77 218-322 141-222 (233)
318 TIGR03609 S_layer_CsaB polysac 20.2 8.7E+02 0.019 24.7 10.0 122 295-447 10-131 (298)
319 PRK10017 colanic acid biosynth 20.2 3.9E+02 0.0084 30.0 8.0 86 333-429 67-163 (426)
320 PLN02489 homocysteine S-methyl 20.1 2.4E+02 0.0051 30.5 6.2 103 228-332 221-328 (335)
321 cd01572 QPRTase Quinolinate ph 20.1 2.5E+02 0.0054 29.6 6.1 63 241-321 193-255 (268)
322 PRK11815 tRNA-dihydrouridine s 20.1 4.8E+02 0.01 28.0 8.4 92 298-419 75-169 (333)
323 cd03329 MR_like_4 Mandelate ra 20.1 3.4E+02 0.0074 29.1 7.3 124 298-421 143-299 (368)
324 cd02801 DUS_like_FMN Dihydrour 20.0 3.5E+02 0.0076 26.3 6.9 26 298-323 65-90 (231)
No 1
>PLN02444 HMP-P synthase
Probab=100.00 E-value=1.2e-257 Score=2029.44 Aligned_cols=633 Identities=88% Similarity=1.415 Sum_probs=603.3
Q ss_pred hhHHHHhcCCCCCCCCCCCccccCCcccccccccc----cccccccc--ccccccCCCCCCCCCCCCccCCCCCCCCCCC
Q 005965 8 TTSIVCKNGIHSTPAKLPSTSFLPGFDVVACKKEI----CSSMSSGI--SAALTFDPPTANSKNTGQRKHTADPASPDFL 81 (667)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (667)
+.+.+++..++.+.++++++++++||..++..... ..++..++ ..+..+.++..+....++++|++||++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (642)
T PLN02444 2 LLSVVCNNANSSAPLKLPNSSLLPGFDVVVRAQALAVSAARLKKESTATRATLTFDPPTGNSEKAKQTKPTVDPSAPDFL 81 (642)
T ss_pred ccchHhhccCCcccccccccccccccccccccccccccccccccccccchhhhccCCcccccccccccCCCcCCCCCCCC
Confidence 45677889999999999999999999988744333 33444333 3333444445555688999999999999999
Q ss_pred CCCcccccCCCCceeeeccccCCCCCccccccEEEeecCCCCceecccCCCCCCCCccCCCCCCCchhhhhhhhcCCCcc
Q 005965 82 PLPSFEQCFPKSSKEYREITHEESGHILQVPFRRIHLSGDEPNFDTYDTSGPQNISPRVGLPKLRKDWIDRREKLGAPRY 161 (667)
Q Consensus 82 ~~~~~~~~~p~S~KiY~~~~~~g~~~~lrVP~ReI~Ls~~~~~~~vYDTSGPy~id~~~GLp~~R~~Wi~~R~d~~~~~m 161 (667)
|++++..+||+|+|+|+++.+.+++++||||||+|+|++++++|+||||||||.||+++|||++|.+||.+|++..+.++
T Consensus 82 ~~~~~~~~~p~s~k~y~~~~~~~s~~~~~v~~r~i~l~~~~~~~~~ydtsgp~~~d~~~gl~~~r~~w~~~r~~~~~~~~ 161 (642)
T PLN02444 82 PIPSFEECFPKSTKEYKEVVHEESGHVLKVPFRRVHLSGDEPHFDNYDTSGPQNIDPRIGLPKLRKEWIDRREKLGTPRY 161 (642)
T ss_pred cCCCCCCCCCCCceEeeCCccCCCCCCCcccceEEEeCCCCCCcCcccCCCCcccchhcCChhhhHHHHhcccccCCCcc
Confidence 99999999999999999998777789999999999999999999999999999999999999999999999999888999
Q ss_pred cHHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHH
Q 005965 162 TQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVY 241 (667)
Q Consensus 162 TQm~~Ar~GiIT~EMe~VA~~E~i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKVNANIGtS~~~~~ieeEve 241 (667)
|||++||+|+|||||++||++||++|||||++||+||+|||+|+|||+++||+||+||+||||||||||++.+|+++|||
T Consensus 162 TQm~~Ar~GiIT~EMe~VA~~E~v~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKVNANIGtS~~~s~ie~Eve 241 (642)
T PLN02444 162 TQMYYAKQGIITEEMLYCATREKLDPEFVRSEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVTSSIEEEVY 241 (642)
T ss_pred hHHHHHhcCCCCHHHHHHHHHcCCCHHHHHHHHhCceEEEecCCCCCCCCceEecCCceeEEeeeecCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEec
Q 005965 242 KVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHA 321 (667)
Q Consensus 242 Kl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHa 321 (667)
|++||++||||||||||||+||++||+|||+||||||||||||||+++++|.+++||||+||++|++||+||||||||||
T Consensus 242 K~~~A~~~GADTvMDLSTGgdi~~iR~~Il~~spvPVGTVPIYqA~~~~~~~~~~lt~d~~~d~ieeQaeqGVDfmTIH~ 321 (642)
T PLN02444 242 KLQWATMWGADTVMDLSTGRHIHETREWILRNSPVPVGTVPIYQALEKVDGIAENLTWEVFRETLIEQAEQGVDYFTIHA 321 (642)
T ss_pred HHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEECh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHH
Q 005965 322 GVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELL 401 (667)
Q Consensus 322 Gv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~ 401 (667)
||+++++++..+|+|||||||||||++||++|++|||||+|||||||||++||||||||||||||||+||||+|||+||+
T Consensus 322 Gv~~~~v~~~~~R~tgIVSRGGSi~a~Wml~~~kENPlYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~ 401 (642)
T PLN02444 322 GVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQYDIALSIGDGLRPGSIYDANDTAQFAELL 401 (642)
T ss_pred hhHHHHHHHHhCcccCceeCCcHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHH
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccceee
Q 005965 402 TQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLC 481 (667)
Q Consensus 402 ~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~GadfLC 481 (667)
+|||||+|||++|||||||||||||||+|++||++||++|++|||||||||||||||||||||||||||+|||+||||||
T Consensus 402 tLGELtkrA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIAPGYDHItsAIGaAiaa~~GadfLC 481 (642)
T PLN02444 402 TQGELTRRAWEKDVQVMNEGPGHVPLHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLC 481 (642)
T ss_pred HHHHHHHHHHHcCCeEEEECCCcCcHHHHHHHHHHHHHhhCCCCceecCCcccccCCCchHHHHHHHHHHHHHcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCcccccCCCChhHHHHHHHHHHHHHHHhhhhcCCcchhhHHHHHHHHHhhcCHHHHHhccCChHHHHhhhhccCCCCC
Q 005965 482 YVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEG 561 (667)
Q Consensus 482 YVTPaEHLgLP~~eDVreGVIA~kIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LalDPe~Ar~~~~~~~p~~~ 561 (667)
||||||||||||+||||||||||||||||||||||+|+|++||++||+||++|||++||+||||||+||+||++++|.+.
T Consensus 482 YVTPaEHLgLP~~eDVreGVIA~KIAAHAaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LaLDPe~Ar~~~~e~~p~~~ 561 (642)
T PLN02444 482 YVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPHAQAWDDALSKARFEFRWMDQFALSLDPVTAMSFHDETLPSEG 561 (642)
T ss_pred ecChHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHCCHHHHHHHcCCHHHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCchhhhhhHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccCCCccCccCCeeeecCCccccc
Q 005965 562 AKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEALQQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYLPESYISSS 640 (667)
Q Consensus 562 ~k~~~~CSMCGp~fCamki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 640 (667)
+|+++|||||||+||||||++++++++++++.....++++.||++|+.+|..++||+||++|.+.|+++|++..+++.+
T Consensus 562 ~k~a~~CSMCGp~fCamki~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~g~~~y~~~~~~~~~ 640 (642)
T PLN02444 562 AKVAHFCSMCGPKFCSMKITEDVRKYAEEHGYGSAEEAVKQGMDAMSAEFLAAKKTISGEQHGESGGEIYLPESYVASK 640 (642)
T ss_pred cCCCCccCCCCcchhhhHHHHHHHHHHhhccccchHHHHHhhHHHhhccccccccchhHHHHHhcCCcccccccchhcc
Confidence 9999999999999999999999999999887754556788999999999999999999999999999999998876544
No 2
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=100.00 E-value=9.2e-247 Score=1943.59 Aligned_cols=522 Identities=74% Similarity=1.168 Sum_probs=508.9
Q ss_pred cccCCCCceeeeccccCCCCCccccccEEEeecCC-------CCceecccCCCCC-----CCCccCCCCCCCchhhhhhh
Q 005965 87 EQCFPKSSKEYREITHEESGHILQVPFRRIHLSGD-------EPNFDTYDTSGPQ-----NISPRVGLPKLRKDWIDRRE 154 (667)
Q Consensus 87 ~~~~p~S~KiY~~~~~~g~~~~lrVP~ReI~Ls~~-------~~~~~vYDTSGPy-----~id~~~GLp~~R~~Wi~~R~ 154 (667)
+.+||+|+|+|++ |++++||||||+|+|+++ ++||+|||||||| .||+++|||++|.+||.+|+
T Consensus 16 ~~~~p~s~k~y~~----g~~~~~~vp~r~i~l~~~~~~~~~~~~~~~~ydtsgpy~dp~~~id~~~gl~~~r~~wi~~r~ 91 (607)
T PRK09284 16 TGPFPGSRKIYVE----GSRPDIRVPMREIHLSDTPTGGGEPNPPVPVYDTSGPYTDPDAKIDLRKGLPKLREPWIEERG 91 (607)
T ss_pred CCCCCCCceecCC----CCCCCccccceEEEeCCCCCCCCCCCCCcceecCCCCCCCCCccchhhcCCchhhhhhcccCC
Confidence 6799999999998 457899999999999974 6899999999999 59999999999999999998
Q ss_pred hc-----------------------------------CCCcccHHHHHHcCCCCHHHHHHHHHcC---------------
Q 005965 155 KL-----------------------------------GAPRYTQMYYAKQGVITEEMLYCATREK--------------- 184 (667)
Q Consensus 155 d~-----------------------------------~~~~mTQm~~Ar~GiIT~EMe~VA~~E~--------------- 184 (667)
|+ .+.++|||++||+|+|||||++||++||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ra~~~~~~TQm~~Ar~GiIT~EMe~VA~~E~~~~~~~~~~~~~g~~ 171 (607)
T PRK09284 92 DTEELEGRSVKSSDYRLADAGLDHLRFGLLRRPRRAKAGKNVTQMHYARQGIITPEMEYVAIRENMGREEVLRRQHPGES 171 (607)
T ss_pred CceeecCccCChhhccccccccccccccCCCCCcccCCCCCcchHHHHhcCCCCHHHHHHHHHhCcccccchhhcccccc
Confidence 73 2457999999999999999999999999
Q ss_pred --------CCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHHHHHHHHHhCCcEeee
Q 005965 185 --------LDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMD 256 (667)
Q Consensus 185 --------i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADtVMD 256 (667)
++|||||++||+||+|||+|+|||+++||+||+||+||||||||||++++|+++||||++||++||||||||
T Consensus 172 ~ga~~~~~i~pE~vR~~VA~Gr~VIP~N~nh~~~~p~~IG~~~~tKVNANIGtS~~~s~ieeEveK~~~A~~~GADtvMD 251 (607)
T PRK09284 172 FGAAIPEEITPEFVRDEVAAGRAIIPANINHPESEPMIIGRNFLVKINANIGNSAVTSSIEEEVEKMVWATRWGADTVMD 251 (607)
T ss_pred ccccCCCccCHHHHHHHHhCceEEeecCCCCCCCCeeEECCCceeEEEeeecCCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCccc
Q 005965 257 LSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMT 336 (667)
Q Consensus 257 LSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~Rvt 336 (667)
||||+|||+||+|||+||||||||||||||+++++|.+++||||+|||+|++||+||||||||||||++++++++.+|+|
T Consensus 252 LSTGgdi~~~R~~Il~~spvPvGTVPiYqA~~~~~~~~~~lt~e~~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~R~t 331 (607)
T PRK09284 252 LSTGKNIHETREWILRNSPVPIGTVPIYQALEKVNGVAEDLTWEIFRDTLIEQAEQGVDYFTIHAGVLLRYVPLTAKRVT 331 (607)
T ss_pred cCCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEEChhhHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred CccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe
Q 005965 337 GIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ 416 (667)
Q Consensus 337 gIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQ 416 (667)
||||||||||++||++|++|||||+|||+|||||++||||||||||||||||+||||+|||+||++|||||+|||++|||
T Consensus 332 gIVSRGGSima~Wml~h~kENplYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~tLGELt~rA~e~gVQ 411 (607)
T PRK09284 332 GIVSRGGSIMAKWCLAHHKENFLYTHFEEICEIMAAYDVSFSLGDGLRPGSIADANDEAQFAELETLGELTKIAWEHDVQ 411 (607)
T ss_pred CcccCCHHHHHHHHHHcCCcCcHHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccceeeecCcccccCCCChhH
Q 005965 417 VMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDD 496 (667)
Q Consensus 417 VMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~GadfLCYVTPaEHLgLP~~eD 496 (667)
||||||||||||+|++||++||++|++|||||||||||||||||||||||||||+|||+||||||||||||||||||+||
T Consensus 412 VMIEGPGHVPl~~I~~N~~lqk~lc~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad~LCYVTPaEHLgLP~~eD 491 (607)
T PRK09284 412 VMIEGPGHVPMHLIKENMDKQLEHCHEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWFGTAMLCYVTPKEHLGLPNKDD 491 (607)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhCCCCeeecCCcccccCCCchHHHHHHHHHHHHHcCCCeEEecChHHHcCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCcchhhHHHHHHHHHhhcCHHHHHhccCChHHHHhhhhccCCCCCCCCCCcccCCCCCch
Q 005965 497 VKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPSEGAKVAHFCSMCGPKFC 576 (667)
Q Consensus 497 VreGVIA~kIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LalDPe~Ar~~~~~~~p~~~~k~~~~CSMCGp~fC 576 (667)
||+|||||||||||||||||+|+|++||++||+||++|||++||+||||||+||+||++++|++.+|+++|||||||+||
T Consensus 492 VreGVIA~KIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LaLDPe~Ar~~~de~~p~~~~k~a~~CSMCGp~fC 571 (607)
T PRK09284 492 VKEGVITYKIAAHAADLAKGHPGAQIRDNALSKARFEFRWEDQFNLSLDPDTARAFHDETLPAESAKVAHFCSMCGPKFC 571 (607)
T ss_pred HHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHCCHHHHHHHhcCHHHHHHHHhhcCCccccCCCCccCCCChhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccCCCccCccCCeeeecC
Q 005965 577 SMKITEDVRKYAEEHGYGSAEEALQQGMDAMSAEFLAAKKTVSGEQHGEVGGEIYLPE 634 (667)
Q Consensus 577 amki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~g~~~y~~~ 634 (667)
||||++++++++++ +.||++||+||++ .|++||++.
T Consensus 572 amki~~~~~~~~~~----------~~gm~~~~~~f~~------------~g~~~y~~~ 607 (607)
T PRK09284 572 SMKISQEVRDYAAE----------EAGMAEKSEEFRA------------SGGELYLPV 607 (607)
T ss_pred hhHHHHHHHHHhhh----------hccHHHHHHHHHh------------hCcccccCC
Confidence 99999999998764 3599999999999 899999863
No 3
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=100.00 E-value=3.3e-213 Score=1633.23 Aligned_cols=426 Identities=68% Similarity=1.066 Sum_probs=412.6
Q ss_pred cccHHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHH
Q 005965 160 RYTQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEE 239 (667)
Q Consensus 160 ~mTQm~~Ar~GiIT~EMe~VA~~E~i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKVNANIGtS~~~~~ieeE 239 (667)
+||||++||+|+||+||++||++||+ |||||++||+||+|||+|+|||+++||+||+||+||||||||||++++|+++|
T Consensus 2 ~~Tqm~~Ar~GiiT~EM~~VA~~E~~-~e~vr~~vA~Gr~iIp~N~~h~~~~p~~IG~~~~tKVNaNiGtS~~~~~i~~E 80 (432)
T COG0422 2 NMTQMEYARKGIITPEMEFVAEREGP-PEFVRREVAEGRAIIPANINHPELEPMIIGRGLRTKVNANIGTSADTSDIDEE 80 (432)
T ss_pred cccHHHHHhcCCCCHHHHHHHHhcCC-HHHHHHHHhCCcEEeecCCCCCcccceeeccCceEEEeeeecCCcccCCHHHH
Confidence 68999999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Q 005965 240 VYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (667)
Q Consensus 240 veKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTI 319 (667)
|||++||++|||||||||||||||++||+|||+||||||||||||||++++++.+++||||+||++||+||+||||||||
T Consensus 81 veK~~~A~~~GADtvMDLStGgdl~eiR~~ii~~s~vPvGTVPIYqA~~~~~~~~~~~t~d~~~~~v~~qa~~GVdfmTI 160 (432)
T COG0422 81 VEKAVWAIKWGADTVMDLSTGGDLHEIREWIIRNSPVPVGTVPIYQALEEVNGKVEDLTEDDFFDTVEKQAEQGVDFMTI 160 (432)
T ss_pred HHHHHHHHHhCcceeEecccCCCHHHHHHHHHhcCCCCcCCchHHHHHHHHhcchhhCCHHHHHHHHHHHHHhCCcEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccccc--CcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHH
Q 005965 320 HAGVLLRYIPLTA--KRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQF 397 (667)
Q Consensus 320 HaGv~~~~l~~~~--~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~ 397 (667)
||||++++++++. +|+|||||||||||++||++|++|||||+|||+||||||+||||||||||||||||+||||+|||
T Consensus 161 HaGV~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~~~~ENply~~fd~lleI~k~yDvtlSLGDglRPG~i~DA~D~aQ~ 240 (432)
T COG0422 161 HAGVLLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNHKENPLYEHFDELLEIFKEYDVTLSLGDGLRPGCIADANDEAQF 240 (432)
T ss_pred ehhhhHHHHHHHHhcCceeeeeccchHHHHHHHHHcCCcCchhhhHHHHHHHHHHhCeeeeccCCCCCCcccCCccHHHH
Confidence 9999999999754 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhccc
Q 005965 398 AELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGT 477 (667)
Q Consensus 398 ~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~Ga 477 (667)
+||++|||||+|||++|||||||||||||||+|++||++||++|++|||||||||||||||||||||||||||+|||+||
T Consensus 241 ~EL~tlgeL~krA~~~gVQvmvEGPGHvpl~~I~~nv~l~k~~c~~aPfYvLGPLvTDIApGYDHItsAIGaA~aa~~Ga 320 (432)
T COG0422 241 AELITLGELTKRAWEAGVQVMVEGPGHVPLNEIEANVKLQKELCDGAPFYVLGPLVTDIAPGYDHITSAIGAAMAAWAGA 320 (432)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCcCcHHHHHHHHHHHHHhcCCCCeeeeCCcccccCCCchHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCcccccCCCChhHHHHHHHHHHHHHHHhhhhcCCcchhhHHHHHHHHHhhcCHHHHHhccCChHHHHhhhhccC
Q 005965 478 ALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETL 557 (667)
Q Consensus 478 dfLCYVTPaEHLgLP~~eDVreGVIA~kIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LalDPe~Ar~~~~~~~ 557 (667)
||||||||+|||||||+||||+|||||||||||||+|||+|+|++||++||+||++|||++||+||||||+||+||++++
T Consensus 321 d~LCYVTPaEHL~LP~~eDV~eGvIa~kIAAHaaD~aK~~~~a~~~D~~ms~aR~~~dWe~qf~lalDpe~Ar~~~~e~~ 400 (432)
T COG0422 321 DMLCYVTPAEHLGLPNVEDVKEGVIAYKIAAHAADLAKGHPGARDRDDAMSKARFEFDWEDQFELALDPERARAYHDETL 400 (432)
T ss_pred ceEEecCcHHHcCCCCHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHhCCHHHHHHHhcChHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCCCchhhhhhHHHHH
Q 005965 558 PSEGAKVAHFCSMCGPKFCSMKITEDVRK 586 (667)
Q Consensus 558 p~~~~k~~~~CSMCGp~fCamki~~~~~~ 586 (667)
|++..+.+++|+||||+||+|++.++.++
T Consensus 401 p~~~~~csmcg~~C~~k~~~~~~~~~~~~ 429 (432)
T COG0422 401 PEESDKCAMCGSMCAPKFCSMKISQDVRD 429 (432)
T ss_pred CCCcchhhhhhcccCHHHHHHHHhHhhhh
Confidence 99876655666666666666666555544
No 4
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=100.00 E-value=9e-207 Score=1596.27 Aligned_cols=420 Identities=60% Similarity=0.940 Sum_probs=414.2
Q ss_pred ccHHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHH
Q 005965 161 YTQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEV 240 (667)
Q Consensus 161 mTQm~~Ar~GiIT~EMe~VA~~E~i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKVNANIGtS~~~~~ieeEv 240 (667)
||||++||+|+||+||++||++||++||+||++||+|++|||+|+||++++|++||++|+||||||||||++.+|+++|+
T Consensus 1 ~Tq~~~Ar~G~iT~em~~vA~~E~v~~e~ir~~vA~G~iVIp~N~~~~~~~p~~IG~glrtKVNaNIGtS~~~~d~~~E~ 80 (423)
T TIGR00190 1 MTQMHYARKGVITPEMKFVAERENVDPEFLRREVASGRIVIPSNINREESEPMGIGRNLRTKVNANIGTSADTSDIEEEV 80 (423)
T ss_pred CChHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHhhCceEEeecCCCCCCCCceEecCCceeEEEeeecCCCCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 005965 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (667)
Q Consensus 241 eKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIH 320 (667)
+|+++|++|||||||||||||||+++|++||++|||||||||||||+.++.+.+.+||+|+||++||+||+|||||||||
T Consensus 81 ~K~~~A~~~GADtiMDLStGgdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~dGVDfmTiH 160 (423)
T TIGR00190 81 EKALIAIKYGADTVMDLSTGGDLDEIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAKDGVDFMTIH 160 (423)
T ss_pred HHHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEEc
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred ccccccccccc--cCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHH
Q 005965 321 AGVLLRYIPLT--AKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFA 398 (667)
Q Consensus 321 aGv~~~~l~~~--~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~ 398 (667)
||||++++++. .+|+|||||||||||++||++|++|||||+|||||||||++||||||||||||||||+||+|+||++
T Consensus 161 ~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i~DA~D~aQi~ 240 (423)
T TIGR00190 161 AGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYDVTLSLGDGLRPGCIADATDRAQIS 240 (423)
T ss_pred cchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHH
Confidence 99999999974 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccc
Q 005965 399 ELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTA 478 (667)
Q Consensus 399 EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad 478 (667)
||++||||++|||++|||||||||||||||||++||++||++|++|||||||||||||||||||||||||||+|||+|||
T Consensus 241 El~~lgeL~~rA~e~gVQvMVEGPGHvPl~~I~~nv~lqK~lc~~APfYvLGPLvTDiApGYDHItsAIGgAiAa~~GAd 320 (423)
T TIGR00190 241 ELITLGELVERAREADVQCMVEGPGHVPLDQIEANVRLQKELCDEAPFYVLGPLVTDIAPGYDHITSAIGAAIAGWAGAD 320 (423)
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHHHhhCCCCeeecCCcccccCCCchHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCcccccCCCChhHHHHHHHHHHHHHHHhhhhcCCcchhhHHHHHHHHHhhcCHHHHHhccCChHHHHhhhhccCC
Q 005965 479 LLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLP 558 (667)
Q Consensus 479 fLCYVTPaEHLgLP~~eDVreGVIA~kIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LalDPe~Ar~~~~~~~p 558 (667)
|||||||+|||+|||+|||||||||+||||||||||||+|+|++||++||+||++|||++||+||||||+||++|+++.|
T Consensus 321 fLCYVTPaEHL~LP~~eDVreGviA~kIAAHaaDiakg~~~A~e~D~~Ms~AR~~ldWe~q~~lalDPe~ar~~r~~~~~ 400 (423)
T TIGR00190 321 FLCYVTPKEHLALPNVEDVKEGVIAYKIAAHAADLAKGHPGARERDLEMSKARKNFDWERQFELALDPEKAREYRDETPP 400 (423)
T ss_pred eEEecCcHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHCCHHHHHHHcCCHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCcccCCCCCchhhhhhHHHH
Q 005965 559 SEGAKVAHFCSMCGPKFCSMKITEDVR 585 (667)
Q Consensus 559 ~~~~k~~~~CSMCGp~fCamki~~~~~ 585 (667)
.+. ++||||| +|||||++++++
T Consensus 401 ~~~----~~CsMCG-~~Ca~k~~~~~~ 422 (423)
T TIGR00190 401 EDE----DFCSMCG-KYCAMKIVQEAR 422 (423)
T ss_pred CCC----CccCcch-HHHHHHHHHHhc
Confidence 763 7999999 999999999765
No 5
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=100.00 E-value=3.1e-205 Score=1589.07 Aligned_cols=421 Identities=54% Similarity=0.859 Sum_probs=412.8
Q ss_pred ccHHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHH
Q 005965 161 YTQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEV 240 (667)
Q Consensus 161 mTQm~~Ar~GiIT~EMe~VA~~E~i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKVNANIGtS~~~~~ieeEv 240 (667)
||||+.||+|+||+||++||++||++||+||++||+|++|||+|+||++++|++||+||+||||||||||++.+|+++|+
T Consensus 1 ~Tq~~~Ar~G~iT~em~~vA~~E~v~~e~ir~~vA~G~iVIp~N~~h~~~~p~~IG~gl~tKVNaNIGtS~~~~d~~~E~ 80 (431)
T PRK13352 1 MTQMEAARKGIITEEMEYVAKKEGVDPEFIREGVAEGRIVIPANINHKNLKPVGIGKGLRTKVNANIGTSSDISDIEEEL 80 (431)
T ss_pred CChHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhCceEEEecCCCCCCCCeeEEcCCceeEEeeeecCCCCCCCHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHh---cCCCCCCCHHHHHHHHHHHHhcCCCEE
Q 005965 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKV---DGIAENLSWEVFRDTLIEQAEQGVDYF 317 (667)
Q Consensus 241 eKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~---~g~~~~lt~e~~~d~ieeQAeqGVDfm 317 (667)
+|+++|++|||||||||||||||++||++||++|||||||||||||+.++ ++++.+||+|+||++||+||+||||||
T Consensus 81 ~K~~~A~~~GADtiMDLStggdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~~ie~qa~~GVDfm 160 (431)
T PRK13352 81 EKAKVAVKYGADTIMDLSTGGDLDEIRRAIIEASPVPVGTVPIYQAAVEAARKYGSVVDMTEDDLFDVIEKQAKDGVDFM 160 (431)
T ss_pred HHHHHHHHcCCCeEeeccCCCCHHHHHHHHHHcCCCCCcChhHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999999999999999999999999999999999887 689999999999999999999999999
Q ss_pred EEeccccccccccc--cCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHH
Q 005965 318 TIHAGVLLRYIPLT--AKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTA 395 (667)
Q Consensus 318 TIHaGv~~~~l~~~--~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~A 395 (667)
|||||||++++++. .+|+|||||||||||++||++|++|||||+|||||||||++|||||||||||||||++||+|+|
T Consensus 161 TiHcGi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i~Da~D~a 240 (431)
T PRK13352 161 TIHCGVTRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVTLSLGDGLRPGCIADATDRA 240 (431)
T ss_pred EEccchhHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHH
Confidence 99999999999974 4899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhc
Q 005965 396 QFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGAL 475 (667)
Q Consensus 396 Q~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~ 475 (667)
|++||++||||++|||++|||||||||||||||||++||++||++|++|||||||||||||||||||||||||||+|||+
T Consensus 241 Qi~El~~lgeL~~RA~e~gVQvMVEGPGHvPl~~I~~nv~l~K~lc~~APfYvLGPLvTDiApGYDHIt~AIGgAiAa~~ 320 (431)
T PRK13352 241 QIQELITLGELVKRAREAGVQVMVEGPGHVPLDQIEANVKLQKRLCHGAPFYVLGPLVTDIAPGYDHITSAIGGAIAAAA 320 (431)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHHhhCCCCceecCccccccCCCchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCcccccCCCChhHHHHHHHHHHHHHHHhhhhcCCcchhhHHHHHHHHHhhcCHHHHHhccCChHHHHhhhhc
Q 005965 476 GTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDE 555 (667)
Q Consensus 476 GadfLCYVTPaEHLgLP~~eDVreGVIA~kIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LalDPe~Ar~~~~~ 555 (667)
||||||||||+|||+|||+|||||||||+||||||||||||+|+|++||++||+||++|||++||+||||||+||++|++
T Consensus 321 GAdfLCYVTPaEHL~LP~~eDVreGviA~kIAAHaaDiakg~~~a~~~D~~ms~AR~~ldW~~q~~laiDpe~ar~~~~~ 400 (431)
T PRK13352 321 GADFLCYVTPAEHLGLPNVEDVREGVIASKIAAHAADIAKGRPGARERDDEMSKARKNLDWEKQFELALDPEKAREYRDE 400 (431)
T ss_pred CCCeEEecChHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHCCHHHHHHHcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcccCCCCCchhhhhhHHHHHH
Q 005965 556 TLPSEGAKVAHFCSMCGPKFCSMKITEDVRKY 587 (667)
Q Consensus 556 ~~p~~~~k~~~~CSMCGp~fCamki~~~~~~~ 587 (667)
+. ++.++||||| +||||||++++.+.
T Consensus 401 ~~-----~~~~~CsMCG-~~CA~ki~~~~~~~ 426 (431)
T PRK13352 401 RL-----KDEEACSMCG-KFCAMKIVNEALEG 426 (431)
T ss_pred cC-----CCCCeeCcCH-HHHHHHHHHHHhcc
Confidence 86 2357999999 89999999988653
No 6
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=100.00 E-value=1.2e-204 Score=1581.03 Aligned_cols=418 Identities=55% Similarity=0.878 Sum_probs=317.8
Q ss_pred cHHHHHHcCCCCHHHHHHHHHcCCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHH
Q 005965 162 TQMYYAKQGVITEEMLYCATREKLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVY 241 (667)
Q Consensus 162 TQm~~Ar~GiIT~EMe~VA~~E~i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKVNANIGtS~~~~~ieeEve 241 (667)
|||++||+|+||+||++||++||++||+||++||+|++|||+|+||++.+|++||++|+||||||||||++.+|+++|++
T Consensus 1 Tq~~~Ar~G~iT~em~~vA~~E~i~pE~ir~~vA~G~iVIp~N~~h~~~~p~~IG~gl~tKVNaNIGtS~~~~d~~~E~~ 80 (420)
T PF01964_consen 1 TQMEYARKGIITPEMEYVAEREGISPEFIRRGVAAGRIVIPANINHKELKPVGIGKGLRTKVNANIGTSSDYSDIEEELE 80 (420)
T ss_dssp SHHHHHHTT---HHHHHHHHHHCTTHHHHHHHHHTTSEE----TT-TT-----EETTS--EEEEEE--------HHHHHH
T ss_pred ChHHHHhcCCCCHHHHHHHHHcCCCHHHHHHHHhCceEEEecCCCCCCCCceEecCCCceEEEeeecCCCCCCCHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEec
Q 005965 242 KVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHA 321 (667)
Q Consensus 242 Kl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHa 321 (667)
|+++|++|||||||||||||||+++|++||++|||||||||||||+.+.+|++.+||||+||++||+||+||||||||||
T Consensus 81 K~~~A~~~GADtvMDLStggdl~~iR~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ie~qa~~GVDfmtiH~ 160 (420)
T PF01964_consen 81 KLKIAEKAGADTVMDLSTGGDLDEIRRAILENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDVIEKQAKDGVDFMTIHC 160 (420)
T ss_dssp HHHHHHHTT-SEEEE---STTHHHHHHHHHHT-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHHHHHHHHHT--EEEE-T
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHhCCCccccchHHHHHHHhCCChhhCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred ccccccccccc--CcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHH
Q 005965 322 GVLLRYIPLTA--KRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAE 399 (667)
Q Consensus 322 Gv~~~~l~~~~--~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~E 399 (667)
|||++++++.. +|++||||||||||++||++|++|||||+||||||||||+|||||||||||||||++||+|+||++|
T Consensus 161 git~~~~~~~~~~~R~~giVSRGGs~l~~WM~~n~~ENPly~~fD~lLeI~k~yDVtLSLGDglRPG~i~Da~D~aQi~E 240 (420)
T PF01964_consen 161 GITRETLERLKKSGRIMGIVSRGGSILAAWMLHNGKENPLYEHFDRLLEIAKEYDVTLSLGDGLRPGCIADATDRAQIQE 240 (420)
T ss_dssp T--GGGGGGGT--TSSS----HHHHHHHHHHHHHTS--HHHHTHHHHHHHHTTTT-EEEE--TT--SSGGGTT-HHHHHH
T ss_pred chhHHHHHHHhhhccccCccccchHHHHHHHHhcCCcCcHHHhHHHHHHHHHHhCeeEecccccCCCCcCCCCcHHHHHH
Confidence 99999999755 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccce
Q 005965 400 LLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTAL 479 (667)
Q Consensus 400 L~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~Gadf 479 (667)
|++||||++||||+|||||||||||||||||++||++||++|++|||||||||||||||||||||||||||+|||+||||
T Consensus 241 L~~lgeL~~rA~e~gVQvMVEGPGHVPl~~I~~nv~lqK~lc~~APfYvLGPLvTDiapGYDHIt~AIGgAiaa~~GAdf 320 (420)
T PF01964_consen 241 LIILGELVKRAREAGVQVMVEGPGHVPLNQIEANVKLQKRLCHGAPFYVLGPLVTDIAPGYDHITSAIGGAIAAAAGADF 320 (420)
T ss_dssp HHHHHHHHHHHHHTT--EEEEE-SB--GGGHHHHHHHHHHHTTT--EEEE--BS-SS-TT-HHHHHHHHHHHHHHHT-SE
T ss_pred HHHHHHHHHHHHHCCCeEEeeCCCCCCHHHHHHHHHHHHHhcCCCCcccCCccccccCCChhHHHHHHHHHHHHHcCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCcccccCCCChhHHHHHHHHHHHHHHHhhhhcCCcchhhHHHHHHHHHhhcCHHHHHhccCChHHHHhhhhccCCC
Q 005965 480 LCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDETLPS 559 (667)
Q Consensus 480 LCYVTPaEHLgLP~~eDVreGVIA~kIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LalDPe~Ar~~~~~~~p~ 559 (667)
||||||+|||+|||+|||||||||+||||||||||||+|+|++||++||+||++|||++||+||||||+|+++|+++.|.
T Consensus 321 LCYVTPaEHL~LP~~eDV~eGviA~kIAAHaaDiaKg~~~A~~~D~~ms~AR~~ldWe~q~~laiDpe~a~~~~~~~~~~ 400 (420)
T PF01964_consen 321 LCYVTPAEHLGLPTPEDVREGVIASKIAAHAADIAKGIPGARERDRAMSKARKELDWEKQFELAIDPEKARRIREERPPE 400 (420)
T ss_dssp EE---TTTTTS---HHHHHHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHTT-HHHHHHTSSSHHHHHHH-------
T ss_pred EeeccHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhCCHHHHHHHcCCHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCcccCCCCCchhhhhhHHH
Q 005965 560 EGAKVAHFCSMCGPKFCSMKITEDV 584 (667)
Q Consensus 560 ~~~k~~~~CSMCGp~fCamki~~~~ 584 (667)
+ .++||||| +|||||+++++
T Consensus 401 ~----~~~CsMCG-~~Ca~ki~~~~ 420 (420)
T PF01964_consen 401 D----EDFCSMCG-KFCAMKIVREY 420 (420)
T ss_dssp -------------------------
T ss_pred C----CCeeCCCh-hhHHHHHhhhC
Confidence 5 48999999 99999999864
No 7
>PF13667 ThiC-associated: ThiC-associated domain ; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=99.89 E-value=3.5e-24 Score=184.00 Aligned_cols=65 Identities=48% Similarity=0.795 Sum_probs=41.4
Q ss_pred ccCCCCceeeeccccCCCCCccccccEEEeecCC--------CCceecccCCCCC-----CCCccCCCCCCCchhhhhhh
Q 005965 88 QCFPKSSKEYREITHEESGHILQVPFRRIHLSGD--------EPNFDTYDTSGPQ-----NISPRVGLPKLRKDWIDRRE 154 (667)
Q Consensus 88 ~~~p~S~KiY~~~~~~g~~~~lrVP~ReI~Ls~~--------~~~~~vYDTSGPy-----~id~~~GLp~~R~~Wi~~R~ 154 (667)
++||+|+|+|++ |+.++||||||+|+|+++ |++|.|||||||| .||+++|||++|++||.+|+
T Consensus 1 ~~~P~S~KiY~~----g~~~~irVPmR~I~Ls~t~~~~~~~~n~p~~vYDTSGPYtDp~~~iDi~~GLp~lR~~WI~~R~ 76 (80)
T PF13667_consen 1 QPFPASEKIYVQ----GSRPDIRVPMREIHLSDTPIGNGGSPNPPVPVYDTSGPYTDPDVEIDIRKGLPPLREEWIEERG 76 (80)
T ss_dssp -S-TT-EEEEEE-----SSTT-EEEEEEE---GG------G----EEEE---GGGG-TTS---TTT-S--TTHHHHHHTS
T ss_pred CCCCCCeeEEeC----CCCCCceeecEEEEeCCCccccccCCCCCcCcccCCCCCCCCCcccchhcCChHHHHHHHHhcC
Confidence 479999999998 457899999999999986 6899999999999 59999999999999999999
Q ss_pred hc
Q 005965 155 KL 156 (667)
Q Consensus 155 d~ 156 (667)
|+
T Consensus 77 D~ 78 (80)
T PF13667_consen 77 DT 78 (80)
T ss_dssp -E
T ss_pred Cc
Confidence 85
No 8
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=91.38 E-value=7 Score=36.08 Aligned_cols=167 Identities=13% Similarity=0.055 Sum_probs=98.6
Q ss_pred ChHHHHHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcc-cchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 005965 235 SIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVG-TVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (667)
Q Consensus 235 ~ieeEveKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVG-TVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqG 313 (667)
|.+.=.+=++++++.|+|.|.=+ |.-+..+++.+- | .+|++= .++..-...+.++..+.+++-.+.|
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~--g~~i~~~~~~~~-------~~~~~v~~---~v~~~~~~~~~~~~~~~a~~a~~~G 78 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVN--PGYVRLAADALA-------GSDVPVIV---VVGFPTGLTTTEVKVAEVEEAIDLG 78 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEC--HHHHHHHHHHhC-------CCCCeEEE---EecCCCCCCcHHHHHHHHHHHHHcC
Confidence 55555556788899999997633 434444444321 3 455432 1222222244788888888889999
Q ss_pred CCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCc
Q 005965 314 VDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDAND 393 (667)
Q Consensus 314 VDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D 393 (667)
+|++.+++-.- +.+ . ..+.-+++||.+|++-+ ++++-+.+-+ +|+.. .+
T Consensus 79 ad~i~v~~~~~--~~~--~---------------------~~~~~~~~~~~~i~~~~-~~~~pv~iy~--~p~~~---~~ 127 (201)
T cd00945 79 ADEIDVVINIG--SLK--E---------------------GDWEEVLEEIAAVVEAA-DGGLPLKVIL--ETRGL---KT 127 (201)
T ss_pred CCEEEEeccHH--HHh--C---------------------CCHHHHHHHHHHHHHHh-cCCceEEEEE--ECCCC---CC
Confidence 99999986431 111 0 03456788888888877 6787777765 46554 12
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcC-CCCccccC
Q 005965 394 TAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCN-EAPFYTLG 450 (667)
Q Consensus 394 ~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~-~APfYvLG 450 (667)
...+.++++.+.+.|+..+=..+|..+=+-=-..++.-++.+. +.||.++|
T Consensus 128 ------~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~g 179 (201)
T cd00945 128 ------ADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAG 179 (201)
T ss_pred ------HHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEEC
Confidence 2234466667778899988887774321111123333344443 45666665
No 9
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=91.14 E-value=2.7 Score=44.50 Aligned_cols=75 Identities=25% Similarity=0.389 Sum_probs=44.9
Q ss_pred EeeccccCCCCCChHHHHHHHHHHHHhCCcEe-eecCCCCC--hHHHHHHHHhcCC-CCc--ccchhhhHHHHhcCCCCC
Q 005965 223 VNANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTGRH--IHETREWILRNSA-VPV--GTVPIYQALEKVDGIAEN 296 (667)
Q Consensus 223 VNANIGtS~~~~~ieeEveKl~~A~~~GADtV-MDLSTGgd--i~~~R~~Il~nsp-vPV--GTVPIYqAl~k~~g~~~~ 296 (667)
||+++|.. ++..+.+...+++|+|.| +|.+.|.. ..++=++|-+..| +|| |+|.-.+...
T Consensus 85 v~~~~~~~------~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~-------- 150 (325)
T cd00381 85 VGAAVGTR------EDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAAR-------- 150 (325)
T ss_pred EEEecCCC------hhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHH--------
Confidence 57777764 445778888999999986 57766644 1222233333443 443 4554333322
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecc
Q 005965 297 LSWEVFRDTLIEQAEQGVDYFTIHAG 322 (667)
Q Consensus 297 lt~e~~~d~ieeQAeqGVDfmTIHaG 322 (667)
+ -.+.|+||+.+|-|
T Consensus 151 -------~----l~~aGaD~I~vg~g 165 (325)
T cd00381 151 -------D----LIDAGADGVKVGIG 165 (325)
T ss_pred -------H----HHhcCCCEEEECCC
Confidence 2 23579999999743
No 10
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=91.09 E-value=5.6 Score=40.55 Aligned_cols=175 Identities=21% Similarity=0.144 Sum_probs=92.2
Q ss_pred HHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCC-CC----cc-------cchhhhHHH--H-h-cCCCCCCCHHHHHH
Q 005965 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSA-VP----VG-------TVPIYQALE--K-V-DGIAENLSWEVFRD 304 (667)
Q Consensus 241 eKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nsp-vP----VG-------TVPIYqAl~--k-~-~g~~~~lt~e~~~d 304 (667)
.-++.++..|.-||+|........ .|+.+.+... -| -| ..+-|.... + . .....--+.+++++
T Consensus 46 ~~~~~~l~~GvTtv~d~g~~~~~~-~~~~~~~g~~~gPr~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (342)
T cd01299 46 RQARAALRAGFTTVRDAGGADYGL-LRDAIDAGLIPGPRVFASGRALSQTGGHGDPRGLSGLFPAGGLAAVVDGVEEVRA 124 (342)
T ss_pred HHHHHHHhCCCcEEEeCCCcchHH-HHHHHHcCCccCCceeecchhhcccCCCCccccccccccccCCcceecCHHHHHH
Confidence 468889999999999988665555 7877765542 11 01 111110000 0 0 00111225788999
Q ss_pred HHHHHHhcCCCEEEEec-c-------------cccccccc---ccCcc-cCcccc-ccHHHHHHHHHcCCcCchhhhH--
Q 005965 305 TLIEQAEQGVDYFTIHA-G-------------VLLRYIPL---TAKRM-TGIVSR-GGSIHAKWCLAYHKENFAYEHW-- 363 (667)
Q Consensus 305 ~ieeQAeqGVDfmTIHa-G-------------v~~~~l~~---~~~Rv-tgIVSR-GGSi~a~Wml~h~~ENpLYe~F-- 363 (667)
.+++++++|+|++-+.. | ++.+.+.. ...+. ..+..- .|.-...+++..+.. ..+|.
T Consensus 125 ~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~~~i~~~l~~G~~--~i~H~~~ 202 (342)
T cd01299 125 AVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGAEAIRRAIRAGVD--TIEHGFL 202 (342)
T ss_pred HHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCC--EEeecCC
Confidence 99999999999998775 2 23333321 11111 111111 122223334333222 12332
Q ss_pred --HHHHHHHhHhceeEec---------cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 005965 364 --DEILDICNQYDVALSI---------GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (667)
Q Consensus 364 --D~ileI~k~YDVtlSL---------GDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (667)
|+.++.+++.++.++. ++..+.|...+..+.. -.++...-..+++++++||.|.+
T Consensus 203 ~~~~~~~~l~~~g~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~Gv~v~~ 268 (342)
T cd01299 203 IDDETIELMKEKGIFLVPTLATYEALAAEGAAPGLPADSAEKV-ALVLEAGRDALRRAHKAGVKIAF 268 (342)
T ss_pred CCHHHHHHHHHCCcEEeCcHHHHHHHHhhccccCCCHHHHHHH-HHHHHHHHHHHHHHHHcCCeEEE
Confidence 6788999999998763 2222333221111111 11244455778899999999987
No 11
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=89.02 E-value=7.5 Score=37.54 Aligned_cols=137 Identities=12% Similarity=0.141 Sum_probs=79.8
Q ss_pred CChHHHHHHHHHHHHhCCcEeeecCCCC-ChHHHHHHHHh--cCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHH
Q 005965 234 SSIEEEVYKVQWATMWGADTVMDLSTGR-HIHETREWILR--NSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQA 310 (667)
Q Consensus 234 ~~ieeEveKl~~A~~~GADtVMDLSTGg-di~~~R~~Il~--nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQA 310 (667)
+.++..++. -.++|-..|+.|+.-. +...+.+.=++ ..|++-+.+|-++.++.. .+.+.+.+.++.
T Consensus 27 ~~~~~~l~~---L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~--------~~~i~~~~~~~~ 95 (166)
T PTZ00242 27 SNLPLYIKE---LQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAVIDNW--------LRLLDQEFAKQS 95 (166)
T ss_pred ccHHHHHHH---HHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHHHHHH--------HHHHHHHHHhhc
Confidence 345555444 4578999999997643 32222211112 335555677766554332 011112222222
Q ss_pred hcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccC
Q 005965 311 EQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYD 390 (667)
Q Consensus 311 eqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaD 390 (667)
.+| .-+.|||- +| +||.|.|++.|++.+..- ..++.++..++. |||++
T Consensus 96 ~~g-~~V~VHC~---------aG-----igRSgt~~a~yL~~~~~~-----s~~eAi~~vr~~----------R~~~i-- 143 (166)
T PTZ00242 96 TPP-ETIAVHCV---------AG-----LGRAPILVALALVEYGGM-----EPLDAVGFVREK----------RKGAI-- 143 (166)
T ss_pred cCC-CeEEEECC---------CC-----CCHHHHHHHHHHHHhCCC-----CHHHHHHHHHHH----------CCCCc--
Confidence 333 34789992 33 589999999999987632 467777777765 99998
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCeEE
Q 005965 391 ANDTAQFAELLTQGELTRRAWDKDVQVM 418 (667)
Q Consensus 391 A~D~AQ~~EL~~LGEL~krA~e~gVQVM 418 (667)
+ ..|..=| .+..++-+++|+.+|
T Consensus 144 -~-~~Q~~~l---~~~~~~~~~~~~~~~ 166 (166)
T PTZ00242 144 -N-QTQLQFL---KKYKPRKKAAGCTIM 166 (166)
T ss_pred -h-HHHHHHH---HHHHHHhccCCCccC
Confidence 3 4576655 444566666676654
No 12
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=88.78 E-value=9.3 Score=42.99 Aligned_cols=146 Identities=12% Similarity=0.107 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHHHH-----HhcC----CCEEEEecccc-ccccc----cc---cCcccCccccccHHHHHHHHHcCCcCc
Q 005965 296 NLSWEVFRDTLIEQ-----AEQG----VDYFTIHAGVL-LRYIP----LT---AKRMTGIVSRGGSIHAKWCLAYHKENF 358 (667)
Q Consensus 296 ~lt~e~~~d~ieeQ-----AeqG----VDfmTIHaGv~-~~~l~----~~---~~RvtgIVSRGGSi~a~Wml~h~~ENp 358 (667)
.|+.|.+...++.- .+.| +|++.|++.-. .+.+. .. .+.-.-|-|.=-..+.+=..+-...+|
T Consensus 101 ~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~~dvPLSIDT~dpevleaAleagad~~p 180 (450)
T PRK04165 101 TMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPEKFAKAVKKVAETTDLPLILCSEDPAVLKAALEVVADRKP 180 (450)
T ss_pred CCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEeCCCHHHHHHHHHhcCCCCc
Confidence 34445544444444 4556 88888887432 22121 11 123333444333444443333323333
Q ss_pred h-----hhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHH
Q 005965 359 A-----YEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPEN 433 (667)
Q Consensus 359 L-----Ye~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~N 433 (667)
+ +++|+++++++++|++.+-+ .+ .| |..|-+|++++.++|+.=+|=-||.--+-+=-+|
T Consensus 181 lI~Sat~dN~~~m~~la~~yg~pvVv--------~~--~d------l~~L~~lv~~~~~~GI~dIILDPg~ggf~ksl~~ 244 (450)
T PRK04165 181 LLYAATKENYEEMAELAKEYNCPLVV--------KA--PN------LEELKELVEKLQAAGIKDLVLDPGTENIKETLDD 244 (450)
T ss_pred eEEecCcchHHHHHHHHHHcCCcEEE--------Ec--hh------HHHHHHHHHHHHHcCCCcEEECCCCchhhhhHHH
Confidence 2 47899999999999998877 11 12 6788899999999999888888888544444466
Q ss_pred HHHHHHhcCCCCccccC-ccccccC
Q 005965 434 MQKQLEWCNEAPFYTLG-PLTTDIA 457 (667)
Q Consensus 434 v~lqk~lC~~APfYvLG-PLvTDIA 457 (667)
+.+-+++.=..=|=.|| |+.+...
T Consensus 245 ~~~iRr~Al~~~~~~lgyPil~~~s 269 (450)
T PRK04165 245 FVQIRRAAIKKGDRPLGYPIIAFPI 269 (450)
T ss_pred HHHHHhhhhhcccccCCCCEEEcch
Confidence 66555552222344566 6665443
No 13
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=88.06 E-value=2.5 Score=41.67 Aligned_cols=80 Identities=9% Similarity=0.014 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHhHhcee-EeccCCCCCCCccCCCcHHHHHHH--HHHHHHHHHHHhcCCeEEee--CCCCCC---CCchH
Q 005965 360 YEHWDEILDICNQYDVA-LSIGDGLRPGSIYDANDTAQFAEL--LTQGELTRRAWDKDVQVMNE--GPGHIP---MHKIP 431 (667)
Q Consensus 360 Ye~FD~ileI~k~YDVt-lSLGDGLRPG~iaDA~D~AQ~~EL--~~LGEL~krA~e~gVQVMIE--GPGHVP---l~~I~ 431 (667)
-+++++.+++|++.++. +.+.-|-.|+ ..+..+..+. ..|.+|++.|.+.||.+.+| .|-+.| ++-..
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~----~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~ 158 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKRPA----GVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTE 158 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCCCC----CCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHH
Confidence 47888999999999984 4566554443 3333343333 56889999999999999999 443333 66777
Q ss_pred HHHHHHHHhcCC
Q 005965 432 ENMQKQLEWCNE 443 (667)
Q Consensus 432 ~Nv~lqk~lC~~ 443 (667)
+-+++.+++.+.
T Consensus 159 ~~~~li~~v~~~ 170 (254)
T TIGR03234 159 QALAVIDDVGRE 170 (254)
T ss_pred HHHHHHHHhCCC
Confidence 778888876653
No 14
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=87.47 E-value=0.26 Score=54.33 Aligned_cols=174 Identities=19% Similarity=0.181 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhcCCeEEeeC---CCCCC-------CCchHHHHHHHHH-hcCCCCccccCccccccCCCchhHHHhHHH
Q 005965 401 LTQGELTRRAWDKDVQVMNEG---PGHIP-------MHKIPENMQKQLE-WCNEAPFYTLGPLTTDIAPGYDHITSAIGA 469 (667)
Q Consensus 401 ~~LGEL~krA~e~gVQVMIEG---PGHVP-------l~~I~~Nv~lqk~-lC~~APfYvLGPLvTDIApGYDHItsAIGa 469 (667)
....+|.+.+.+++|-.-.=- ||-+. +.++..+-+|-|+ +=++.--.|=||= ---.|-|-+-+=-
T Consensus 204 ~~fd~lleI~k~yDvtlSLGDglRPG~i~DA~D~aQ~~EL~tlgeL~krA~~~gVQvmvEGPG----Hvpl~~I~~nv~l 279 (432)
T COG0422 204 EHFDELLEIFKEYDVTLSLGDGLRPGCIADANDEAQFAELITLGELTKRAWEAGVQVMVEGPG----HVPLNEIEANVKL 279 (432)
T ss_pred hhHHHHHHHHHHhCeeeeccCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHcCCEEEEECCC----cCcHHHHHHHHHH
Confidence 346788999999999776532 67665 2233333344333 3455566666661 0112334443333
Q ss_pred HHhhhcccceeeecCcccccC-CC-----ChhHHHHHHHHHHHHHHHhhhhc--------CCcchhh-HH----------
Q 005965 470 ANIGALGTALLCYVTPKEHLG-LP-----NRDDVKAGVIAYKIAAHAADLAK--------GHPLAQT-WD---------- 524 (667)
Q Consensus 470 A~aa~~GadfLCYVTPaEHLg-LP-----~~eDVreGVIA~kIAAHaaDlaK--------g~p~A~~-rD---------- 524 (667)
-.--..||-| =-|| || .-|.+-.++=|+-+|+.-+|+-= |.|...+ |+
T Consensus 280 ~k~~c~~aPf-------YvLGPLvTDIApGYDHItsAIGaA~aa~~Gad~LCYVTPaEHL~LP~~eDV~eGvIa~kIAAH 352 (432)
T COG0422 280 QKELCDGAPF-------YVLGPLVTDIAPGYDHITSAIGAAMAAWAGADMLCYVTPAEHLGLPNVEDVKEGVIAYKIAAH 352 (432)
T ss_pred HHHhcCCCCe-------eeeCCcccccCCCchHHHHHHHHHHHHhccCceEEecCcHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3333444544 2355 43 34455555555555555555431 2333221 11
Q ss_pred -HHHHH-HHhhcCHHHHHhc---cCChHHHHhhh--hc----cCCCCCCCCCCcccCCCCCchhhhhhHHHHH
Q 005965 525 -DALSK-ARFEFRWMDQFAL---SLDPMTAMSFH--DE----TLPSEGAKVAHFCSMCGPKFCSMKITEDVRK 586 (667)
Q Consensus 525 -~~mS~-AR~~~dWe~Qf~L---alDPe~Ar~~~--~~----~~p~~~~k~~~~CSMCGp~fCamki~~~~~~ 586 (667)
-.++| -+..-+|++-+.. .||-|+--+.- .+ -.++-..++.+.||||| ++|++|+.++...
T Consensus 353 aaD~aK~~~~a~~~D~~ms~aR~~~dWe~qf~lalDpe~Ar~~~~e~~p~~~~~csmcg-~~C~~k~~~~~~~ 424 (432)
T COG0422 353 AADLAKGHPGARDRDDAMSKARFEFDWEDQFELALDPERARAYHDETLPEESDKCAMCG-SMCAPKFCSMKIS 424 (432)
T ss_pred HHHHhccCcchhhhhHHHHHHHHhCCHHHHHHHhcChHHHHHHhhccCCCCcchhhhhh-cccCHHHHHHHHh
Confidence 11233 2456688876544 36665533221 11 11223335677999999 8999999987654
No 15
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=87.05 E-value=20 Score=32.95 Aligned_cols=110 Identities=14% Similarity=0.050 Sum_probs=69.2
Q ss_pred HhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcC----chhhhHHHHHHHHhHhc---eeEeccCC
Q 005965 310 AEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKEN----FAYEHWDEILDICNQYD---VALSIGDG 382 (667)
Q Consensus 310 AeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~EN----pLYe~FD~ileI~k~YD---VtlSLGDG 382 (667)
-+.||....+|+.......... +..+| ...+++.+.+++|++.+ +++.+|.
T Consensus 37 ~~~gl~i~~~~~~~~~~~~~~~---------------------~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~- 94 (213)
T PF01261_consen 37 EDYGLKIASLHPPTNFWSPDEE---------------------NGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGR- 94 (213)
T ss_dssp HHTTCEEEEEEEEESSSCTGTT---------------------STTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTT-
T ss_pred HHcCCeEEEEeccccccccccc---------------------ccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcc-
Confidence 3458998888876544333221 11122 23788999999999999 5666663
Q ss_pred CCCCCccCCCcHHHHHH-HHHHHHHHHHHHhcCCeEEeeCCCCCCCCch---HHHHHHHHHhcCC
Q 005965 383 LRPGSIYDANDTAQFAE-LLTQGELTRRAWDKDVQVMNEGPGHIPMHKI---PENMQKQLEWCNE 443 (667)
Q Consensus 383 LRPG~iaDA~D~AQ~~E-L~~LGEL~krA~e~gVQVMIEGPGHVPl~~I---~~Nv~lqk~lC~~ 443 (667)
+ +.-.....+.++.. ...|.+|.++|.++||.+.+|--+..+..-. ++-.++-+++-+.
T Consensus 95 -~-~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (213)
T PF01261_consen 95 -Y-PSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFSVEEIYRLLEEVDSP 157 (213)
T ss_dssp -E-SSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESSHHHHHHHHHHHTTT
T ss_pred -c-ccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhhHHHHHHHHhhcCCC
Confidence 1 01111222223333 3368999999999999999998766665444 7777777776553
No 16
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=87.03 E-value=3.5 Score=38.06 Aligned_cols=107 Identities=19% Similarity=0.146 Sum_probs=61.3
Q ss_pred CChHHHHHHHHHHHHhCCcEeeecCCCC-----ChHHHHH---HHHhcC--CCC--cccchhhhHHHHhcCCCCCCCHHH
Q 005965 234 SSIEEEVYKVQWATMWGADTVMDLSTGR-----HIHETRE---WILRNS--AVP--VGTVPIYQALEKVDGIAENLSWEV 301 (667)
Q Consensus 234 ~~ieeEveKl~~A~~~GADtVMDLSTGg-----di~~~R~---~Il~ns--pvP--VGTVPIYqAl~k~~g~~~~lt~e~ 301 (667)
...++=++.++.|.++|||.||=...-. +.+++.+ .|.+.+ ++| +...|--. ++.+.
T Consensus 62 ~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~-----------~~~~~ 130 (201)
T cd00945 62 TTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL-----------KTADE 130 (201)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC-----------CCHHH
Confidence 5578889999999999999998443221 1233333 455542 333 22333211 56777
Q ss_pred HHHHHHHHHhcCCCEEEEecc-----cccccccccc---CcccCcccccc----HHHHHHHH
Q 005965 302 FRDTLIEQAEQGVDYFTIHAG-----VLLRYIPLTA---KRMTGIVSRGG----SIHAKWCL 351 (667)
Q Consensus 302 ~~d~ieeQAeqGVDfmTIHaG-----v~~~~l~~~~---~RvtgIVSRGG----Si~a~Wml 351 (667)
+....+.-.+.|+|++-...| .+...+.... +.-.+|+.-|| ..+..|+.
T Consensus 131 ~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~ 192 (201)
T cd00945 131 IAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIE 192 (201)
T ss_pred HHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHH
Confidence 666655445689999998887 2333333211 11235666666 44555543
No 17
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=85.28 E-value=6 Score=39.65 Aligned_cols=42 Identities=17% Similarity=-0.080 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCeEEeeCCCCCC---CCchHHHHHHHHHhc
Q 005965 400 LLTQGELTRRAWDKDVQVMNEGPGHIP---MHKIPENMQKQLEWC 441 (667)
Q Consensus 400 L~~LGEL~krA~e~gVQVMIEGPGHVP---l~~I~~Nv~lqk~lC 441 (667)
+..+.+|++.|.++||++-||--+..+ .+....-.++.++++
T Consensus 122 ~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~v~ 166 (279)
T cd00019 122 IEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLIK 166 (279)
T ss_pred HHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhcC
Confidence 356788888899999999999755544 566666677777765
No 18
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=85.07 E-value=14 Score=40.03 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=72.1
Q ss_pred HHHHHHH-hcCCCEEEEe-ccccccc-------cccccCcc-----cCc-------cccccHHHHHHHHHcCCcCch---
Q 005965 304 DTLIEQA-EQGVDYFTIH-AGVLLRY-------IPLTAKRM-----TGI-------VSRGGSIHAKWCLAYHKENFA--- 359 (667)
Q Consensus 304 d~ieeQA-eqGVDfmTIH-aGv~~~~-------l~~~~~Rv-----tgI-------VSRGGSi~a~Wml~h~~ENpL--- 359 (667)
+.-.+|. +.|.||+.|| +|...+. +....+++ .++ .|.=-..|.+=....+.+|||
T Consensus 79 ~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInS 158 (319)
T PRK04452 79 AWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGS 158 (319)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 3445787 9999999999 5665531 11111111 122 244466788877777878887
Q ss_pred --hhhHHHHHHHHhHhceeE-eccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCC--eEEeeCCCCCC
Q 005965 360 --YEHWDEILDICNQYDVAL-SIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDV--QVMNEGPGHIP 426 (667)
Q Consensus 360 --Ye~FD~ileI~k~YDVtl-SLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gV--QVMIEGPGHVP 426 (667)
.++|++++++|++|+..+ .+. +.+|..+-+|++++.++|| +=+|=-|+=-|
T Consensus 159 at~en~~~i~~lA~~y~~~Vva~s----------------~~Dln~ak~L~~~l~~~Gi~~edIviDP~~~~ 214 (319)
T PRK04452 159 AEEDNYKKIAAAAMAYGHAVIAWS----------------PLDINLAKQLNILLTELGVPRERIVMDPTTGA 214 (319)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEEc----------------HHHHHHHHHHHHHHHHcCCCHHHEEEeCCccc
Confidence 479999999999999743 333 1226678888899999999 66666666654
No 19
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=84.23 E-value=18 Score=38.84 Aligned_cols=28 Identities=21% Similarity=0.089 Sum_probs=15.3
Q ss_pred CChHHHHHHHHhc-CCCCcccchhhhHHH
Q 005965 261 RHIHETREWILRN-SAVPVGTVPIYQALE 288 (667)
Q Consensus 261 gdi~~~R~~Il~n-spvPVGTVPIYqAl~ 288 (667)
..+.+.++.+-+. +.+-++..+.+-++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~h~~l~ 150 (415)
T cd01297 122 ATFAEYLDALEARPPAVNVAALVGHAALR 150 (415)
T ss_pred CCHHHHHHHHHhcCCCcCeeeccCcHHHH
Confidence 4455556655344 356666666555554
No 20
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=83.91 E-value=44 Score=36.52 Aligned_cols=205 Identities=18% Similarity=0.199 Sum_probs=117.1
Q ss_pred HHHHHHHHHcC-----CCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeec---------cccCCCCCChHHH
Q 005965 174 EEMLYCATREK-----LDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNAN---------IGNSAVASSIEEE 239 (667)
Q Consensus 174 ~EMe~VA~~E~-----i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKVNAN---------IGtS~~~~~ieeE 239 (667)
+.++.++++.+ ++.+.||+.+.+=+. .| . =.+-+|-|-| .|-..+.+|..|
T Consensus 15 ~~~~~l~~~~~tP~~v~d~~~l~~n~~~l~~-~~------~-------i~yavKan~~~~il~~~~~~G~g~dvaS~~E- 79 (420)
T PRK11165 15 ENLLRLPAEYGTPLWVYDADIIRRRIAQLRQ-FD------V-------IRFAQKACSNIHILRLMREQGVKVDAVSLGE- 79 (420)
T ss_pred cCHHHHHHHhCCCEEEEcHHHHHHHHHHHhc-cC------c-------ceEEehhCCCHHHHHHHHHcCCCEEEeCHHH-
Confidence 45566666655 588888887776443 22 1 1266777766 355566666655
Q ss_pred HHHHHHHHHhCCc------EeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHh----------cC--C--------
Q 005965 240 VYKVQWATMWGAD------TVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKV----------DG--I-------- 293 (667)
Q Consensus 240 veKl~~A~~~GAD------tVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~----------~g--~-------- 293 (667)
++.|.+.|.+ .|+==..++.-.++++.+=....+-+.++--.+.+.+. +- .
T Consensus 80 ---~~~a~~~G~~~~~~~~~Ii~~gp~k~~~~l~~a~~~gv~i~vDs~~el~~i~~~~~~~~v~lRvn~~~~~~~~~~~~ 156 (420)
T PRK11165 80 ---IERALAAGYKPGTEPDEIVFTADVIDRATLARVVELKIPVNAGSIDMLDQLGQVSPGHRVWLRINPGFGHGHSQKTN 156 (420)
T ss_pred ---HHHHHHcCCCCCCCCCeEEEeCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHhcCCCcEEEEECCCCCCCCCCcee
Confidence 5566778875 57766677777777777655444444444444433321 10 0
Q ss_pred ------CCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHH
Q 005965 294 ------AENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEIL 367 (667)
Q Consensus 294 ------~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~il 367 (667)
---++.+++.+.+..-.+.|+++.-||+=+-- ++ + ... +-+..+.++
T Consensus 157 ~~~~~sKFGi~~~~~~~~~~~~~~~~l~l~GlH~H~GS-----------~~-~-----~~~----------~~~~~~~l~ 209 (420)
T PRK11165 157 TGGENSKHGIWHEDLPAALAVIQRYGLKLVGIHMHIGS-----------GV-D-----YGH----------LEQVCGAMV 209 (420)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeccC-----------CC-C-----hHH----------HHHHHHHHH
Confidence 01345666655555444568999888774321 11 1 011 233447888
Q ss_pred HHHhHhcee---EeccCCCCCCCccC---CCcHHHHHHHH-HHHHHHHHHHhcCCeEEeeCCCCC
Q 005965 368 DICNQYDVA---LSIGDGLRPGSIYD---ANDTAQFAELL-TQGELTRRAWDKDVQVMNEGPGHI 425 (667)
Q Consensus 368 eI~k~YDVt---lSLGDGLRPG~iaD---A~D~AQ~~EL~-~LGEL~krA~e~gVQVMIEGPGHV 425 (667)
++++++.+. |++|-|+ |....+ ..|-.++.+++ .+.+..+.....++++++| ||..
T Consensus 210 ~~~~~~g~~~~~IdiGGGf-~~~y~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~E-PGR~ 272 (420)
T PRK11165 210 RQVIELGQDIEAISAGGGL-SIPYREGEEPVDTEHYFGLWDAARKRIARHLGHPVKLEIE-PGRF 272 (420)
T ss_pred HHHHHhCCCCcEEEeCCCc-ccCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCCceEEEc-cCcc
Confidence 889998876 8999999 222222 13555555532 2223332333457899988 6654
No 21
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=83.88 E-value=4.4 Score=39.81 Aligned_cols=114 Identities=25% Similarity=0.272 Sum_probs=73.0
Q ss_pred eeEeeccccCCCCCChHHHHHHHHHHHHhCCcEe---eecCC--CCChHHHHHHHHhcCCCCcccch---hhhHHHHhcC
Q 005965 221 VKVNANIGNSAVASSIEEEVYKVQWATMWGADTV---MDLST--GRHIHETREWILRNSAVPVGTVP---IYQALEKVDG 292 (667)
Q Consensus 221 tKVNANIGtS~~~~~ieeEveKl~~A~~~GADtV---MDLST--Ggdi~~~R~~Il~nspvPVGTVP---IYqAl~k~~g 292 (667)
+++...+|........+.=+.-++.|++.|||.| ++.+- .++.+++.++|-+-...--| +| ||+.
T Consensus 53 ~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g-~~lkvI~e~------ 125 (203)
T cd00959 53 VKVCTVIGFPLGATTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGG-APLKVILET------ 125 (203)
T ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCC-CeEEEEEec------
Confidence 5555556555555556666666889999999976 44431 45778788777644332112 44 3443
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEecccc-----cccccc---c-cCcccCccccccH
Q 005965 293 IAENLSWEVFRDTLIEQAEQGVDYFTIHAGVL-----LRYIPL---T-AKRMTGIVSRGGS 344 (667)
Q Consensus 293 ~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~-----~~~l~~---~-~~RvtgIVSRGGS 344 (667)
..|+.|.+....+--+|-|.||+-.=.|.. .+.+.. . ..+ ++|+-.||-
T Consensus 126 --~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~-v~ik~aGGi 183 (203)
T cd00959 126 --GLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGR-VGVKAAGGI 183 (203)
T ss_pred --CCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCC-ceEEEeCCC
Confidence 345788899999999999999998875543 343332 1 133 488888873
No 22
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=83.64 E-value=26 Score=36.65 Aligned_cols=63 Identities=25% Similarity=0.438 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHhH---hce---eEeccCCCCCCCccCC---CcHHHHHHHHHHHHHHHHHH--hcCCeEEeeCCCCC
Q 005965 359 AYEHWDEILDICNQ---YDV---ALSIGDGLRPGSIYDA---NDTAQFAELLTQGELTRRAW--DKDVQVMNEGPGHI 425 (667)
Q Consensus 359 LYe~FD~ileI~k~---YDV---tlSLGDGLRPG~iaDA---~D~AQ~~EL~~LGEL~krA~--e~gVQVMIEGPGHV 425 (667)
+.+.++++.+++.+ +.+ .|++|.|+ |..-.+. .|-.++++.+ .++.+... ..++++++| ||..
T Consensus 186 ~~~~~~~~~~~~~~l~~~g~~~~~idiGGG~-~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~l~~E-pGR~ 259 (373)
T cd06828 186 FVEAAEKLLDLAAELRELGIDLEFLDLGGGL-GIPYRDEDEPLDIEEYAEAI--AEALKELCEGGPDLKLIIE-PGRY 259 (373)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEeCCCC-CcccCCCCCCCCHHHHHHHH--HHHHHHHHccCCCceEEEe-cCcc
Confidence 34455555555444 343 49999999 4332221 2444443322 33333332 248999998 6653
No 23
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=82.11 E-value=8.2 Score=39.16 Aligned_cols=85 Identities=20% Similarity=0.198 Sum_probs=49.2
Q ss_pred eccccCCCCCChHHHHHHHHHHHHhCCcEe-eecCCC-----C----C---hHHHHHHHHhcCCCCcccchhhhHHHHhc
Q 005965 225 ANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTG-----R----H---IHETREWILRNSAVPVGTVPIYQALEKVD 291 (667)
Q Consensus 225 ANIGtS~~~~~ieeEveKl~~A~~~GADtV-MDLSTG-----g----d---i~~~R~~Il~nspvPVGTVPIYqAl~k~~ 291 (667)
+||+.+ +.++=++=++.+.++|+|.| +++|+- . + +.++-++|-+...+||. .|..
T Consensus 103 ~si~g~----~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~--------vKl~ 170 (289)
T cd02810 103 ASVGGS----SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLL--------VKLS 170 (289)
T ss_pred EEeccC----CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEE--------EEeC
Confidence 367554 33433444566677899977 455532 1 1 22333334333333322 1221
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCEEEEecccc
Q 005965 292 GIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVL 324 (667)
Q Consensus 292 g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~ 324 (667)
-.++.|++.+.++.-.+.||||+++|.++.
T Consensus 171 ---~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~ 200 (289)
T cd02810 171 ---PYFDLEDIVELAKAAERAGADGLTAINTIS 200 (289)
T ss_pred ---CCCCHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence 135677888888877788999999998754
No 24
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=81.85 E-value=21 Score=38.61 Aligned_cols=152 Identities=16% Similarity=0.125 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHHcCC-------CHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHHH
Q 005965 170 GVITEEMLYCATREKL-------DPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYK 242 (667)
Q Consensus 170 GiIT~EMe~VA~~E~i-------~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKVNANIGtS~~~~~ieeEveK 242 (667)
..|+.+|..+|.+.|. ++|..-+.| +.. + +. ++ =+|+++|++. ++.|+
T Consensus 44 t~in~~LA~~a~~~G~~~i~hK~~~E~~~sfv-------rk~-k-~~--------~L--~v~~SvG~t~------e~~~r 98 (321)
T TIGR01306 44 TIIDEKLAEQLAENGYFYIMHRFDEESRIPFI-------KDM-Q-ER--------GL--FASISVGVKA------CEYEF 98 (321)
T ss_pred hhhhHHHHHHHHHcCCEEEEecCCHHHHHHHH-------Hhc-c-cc--------cc--EEEEEcCCCH------HHHHH
Confidence 3789999999999984 888766653 222 1 11 22 4788998875 66788
Q ss_pred HHHHHHhC--CcEee-ecCCCCChHH--HHHHHHhcCCCC---cccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 005965 243 VQWATMWG--ADTVM-DLSTGRHIHE--TREWILRNSAVP---VGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (667)
Q Consensus 243 l~~A~~~G--ADtVM-DLSTGgdi~~--~R~~Il~nspvP---VGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGV 314 (667)
+..-++.| +|.|- |.+-|-+..- +=+||-+..|+| .|.| . |.+...+.+ +.|+
T Consensus 99 ~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV-------------~--t~e~a~~l~----~aGa 159 (321)
T TIGR01306 99 VTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNV-------------G--TPEAVRELE----NAGA 159 (321)
T ss_pred HHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecC-------------C--CHHHHHHHH----HcCc
Confidence 88888888 79765 8888854433 346676666665 3322 1 444443333 5799
Q ss_pred CEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCC
Q 005965 315 DYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPG 386 (667)
Q Consensus 315 DfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG 386 (667)
|.+.++-|--+-..-+ -.+|+-. ..|.+ .-|.|+.+..++.+=.-=|+|-|
T Consensus 160 d~I~V~~G~G~~~~tr---~~~g~g~------~~~~l------------~ai~ev~~a~~~pVIadGGIr~~ 210 (321)
T TIGR01306 160 DATKVGIGPGKVCITK---IKTGFGT------GGWQL------------AALRWCAKAARKPIIADGGIRTH 210 (321)
T ss_pred CEEEECCCCCccccce---eeeccCC------CchHH------------HHHHHHHHhcCCeEEEECCcCcH
Confidence 9998884422111000 0144411 25653 67888888887764333345544
No 25
>PRK08227 autoinducer 2 aldolase; Validated
Probab=81.67 E-value=5.2 Score=42.00 Aligned_cols=145 Identities=15% Similarity=0.152 Sum_probs=85.6
Q ss_pred cchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCcccc--ccHHHHHHHHHcCCcC
Q 005965 280 TVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSR--GGSIHAKWCLAYHKEN 357 (667)
Q Consensus 280 TVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSR--GGSi~a~Wml~h~~EN 357 (667)
-||+=|.++. |.+..| +++-.+|.+-++ |+|-+..|-|+.+.+.+.. +=.++|=| ||+-+. .+
T Consensus 26 iva~DHG~~~--Gp~~gl--~~~~~~~~~i~~-~~da~~~~~G~~~~~~~~~--~~~~lil~ls~~t~~~--------~~ 90 (264)
T PRK08227 26 MLAFDHGYFQ--GPTTGL--ERIDINIAPLFP-YADVLMCTRGILRSVVPPA--TNKPVVLRASGGNSIL--------KE 90 (264)
T ss_pred EEECCCcccc--CCCccc--cChHHHHHHHhh-cCCEEEeChhHHHhccccc--CCCcEEEEEcCCCCCC--------CC
Confidence 3666665542 444444 445566666666 8999999999988765532 12334333 222111 11
Q ss_pred chhhhHHHHHHHHhHhceeEeccCCCCCCCccCCC-----cHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHH
Q 005965 358 FAYEHWDEILDICNQYDVALSIGDGLRPGSIYDAN-----DTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPE 432 (667)
Q Consensus 358 pLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~-----D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~ 432 (667)
|.+ ..++-|.=|.+|-|+-+=+- .+.+-+-|..||++++.|.++|+-+|+
T Consensus 91 ~~~------------~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla------------- 145 (264)
T PRK08227 91 LSN------------EAVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMA------------- 145 (264)
T ss_pred CCc------------ccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEE-------------
Confidence 111 22334444555555422110 233455677899999999999999993
Q ss_pred HHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccceeee
Q 005965 433 NMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCY 482 (667)
Q Consensus 433 Nv~lqk~lC~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~GadfLCY 482 (667)
.|.-|+-+.| ..|-|.-|.. +++-.|||++--
T Consensus 146 -------------~~prG~~~~~---~~~~ia~aaR--iaaELGADiVK~ 177 (264)
T PRK08227 146 -------------VTAVGKDMVR---DARYFSLATR--IAAEMGAQIIKT 177 (264)
T ss_pred -------------EecCCCCcCc---hHHHHHHHHH--HHHHHcCCEEec
Confidence 3455766555 6665555544 678899999863
No 26
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=81.61 E-value=7 Score=40.28 Aligned_cols=182 Identities=14% Similarity=0.123 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccc---ccc--ccCcccCccc--------------cccHHHHHHHHHcCC
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRY---IPL--TAKRMTGIVS--------------RGGSIHAKWCLAYHK 355 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~---l~~--~~~RvtgIVS--------------RGGSi~a~Wml~h~~ 355 (667)
..++.+...+..++|.++|.|++=|=+--++.. +.. ...|+..+|. .-=..+. =.+.++.
T Consensus 18 ~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~-~al~~G~ 96 (257)
T TIGR01496 18 RFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVAR-AALEAGA 96 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHH-HHHHcCC
Confidence 347889999999999999999999932111110 000 0123332221 1111111 1222222
Q ss_pred c--Cc-hhhhHHHHHHHHhHhceeEeccC--CCCCCCccCCCc-HHHHHH-HHHHHHHHHHHHhcCC---eEEeeCCCCC
Q 005965 356 E--NF-AYEHWDEILDICNQYDVALSIGD--GLRPGSIYDAND-TAQFAE-LLTQGELTRRAWDKDV---QVMNEGPGHI 425 (667)
Q Consensus 356 E--Np-LYe~FD~ileI~k~YDVtlSLGD--GLRPG~iaDA~D-~AQ~~E-L~~LGEL~krA~e~gV---QVMIEGPGHV 425 (667)
. |- -++.++++++++++|++.+=+-. | .|....+..+ ..-+.| +..+-+++++|.++|| ++++. ||.-
T Consensus 97 ~iINsis~~~~~~~~~l~~~~~~~vV~m~~~g-~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilD-Pg~g 174 (257)
T TIGR01496 97 DIINDVSGGQDPAMLEVAAEYGVPLVLMHMRG-TPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILD-PGIG 174 (257)
T ss_pred CEEEECCCCCCchhHHHHHHcCCcEEEEeCCC-CCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEE-CCCC
Confidence 1 10 01127899999999977666532 3 3544322111 111222 3446778899999999 55555 5776
Q ss_pred CCCchHHHHHHHHHh---c-CCCCccccCc-------cccccCCCchhHHHhHHHHHhhhccccee
Q 005965 426 PMHKIPENMQKQLEW---C-NEAPFYTLGP-------LTTDIAPGYDHITSAIGAANIGALGTALL 480 (667)
Q Consensus 426 Pl~~I~~Nv~lqk~l---C-~~APfYvLGP-------LvTDIApGYDHItsAIGaA~aa~~GadfL 480 (667)
+...++.|+.+-+.+ . -+.|.. +|. -+|+-.+.=-...++.-.+++...||++|
T Consensus 175 f~ks~~~~~~~l~~i~~l~~~~~p~l-~G~SrkSfig~v~~~~~~~r~~~t~~~~~~a~~~Ga~ii 239 (257)
T TIGR01496 175 FGKTPEHNLELLKHLEEFVALGYPLL-VGASRKSFIGALLGTPPEERLEGTLAASAYAVQKGADIV 239 (257)
T ss_pred cccCHHHHHHHHHHHHHHHhCCCcEE-EEecccHHHHhhcCCChhhhhHHHHHHHHHHHHcCCCEE
Confidence 777777666554432 1 234532 121 12222232233445555566667777765
No 27
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=81.27 E-value=81 Score=33.71 Aligned_cols=171 Identities=18% Similarity=0.164 Sum_probs=92.0
Q ss_pred HHHHHHcC------CCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeec---------cccCCCCCChHHHHH
Q 005965 177 LYCATREK------LDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNAN---------IGNSAVASSIEEEVY 241 (667)
Q Consensus 177 e~VA~~E~------i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKVNAN---------IGtS~~~~~ieeEve 241 (667)
+.++++-| ++++.||+.+.+=+-.+|.+. + =.+-+|-|++ -|..-+.+|+.|
T Consensus 16 ~~l~~~~g~tP~~v~d~~~l~~n~~~l~~~~~~~~-----~-----i~yavKaN~~~~vl~~l~~~g~g~dvaS~~E--- 82 (398)
T TIGR03099 16 TELAARAGGTPFYAYDRGLVSERVAALRKALPEEL-----A-----IHYAVKANPMPALLAHMAPLVDGFDVASAGE--- 82 (398)
T ss_pred HHHHHHhCCCCEEEEeHHHHHHHHHHHHHhccccC-----c-----EEEEeccCCCHHHHHHHHHcCCcEEEeCHHH---
Confidence 45555555 577888877776554454321 1 1234566655 344444555544
Q ss_pred HHHHHHHhCCc--EeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHh--------------c--------C-----
Q 005965 242 KVQWATMWGAD--TVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKV--------------D--------G----- 292 (667)
Q Consensus 242 Kl~~A~~~GAD--tVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~--------------~--------g----- 292 (667)
++.|.+.|.+ .|+=...++...+++..+=.+..+-|-+..-.+.+.+. + |
T Consensus 83 -~~~~~~~G~~~~~I~~~gp~k~~~~l~~a~~~gv~i~vDs~~el~~l~~~a~~~~~~~~v~LRin~~~~~~~~~~~~~~ 161 (398)
T TIGR03099 83 -LAVALDTGYDPGCISFAGPGKTDAELRRALAAGVLINVESLRELNRLAALSEALGLRARVAVRVNPDFELKGSGMKMGG 161 (398)
T ss_pred -HHHHHHcCCChhHEEEeCCCCCHHHHHHHHhCCCEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCCCCCCCcccccCC
Confidence 4455677866 47777777788888887654444444444433332211 1 0
Q ss_pred --CCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHH
Q 005965 293 --IAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDIC 370 (667)
Q Consensus 293 --~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~ 370 (667)
.---++.+++.+.++.-.+.|+.+..||+=+.-+. .+-. .+... +...|+.++++.
T Consensus 162 ~~srFGi~~~e~~~~~~~~~~~~l~l~Glh~h~gs~~-----------~~~~-~~~~~----------~~~~~~~~~~~~ 219 (398)
T TIGR03099 162 GAKQFGIDAEQVPAALAFIKAADLDFQGFHIFAGSQN-----------LNAE-AIIEA----------QAKTLALALRLA 219 (398)
T ss_pred CCCcCCCCHHHHHHHHHHHHhCCCeEEEEEecccccC-----------CCHH-HHHHH----------HHHHHHHHHHHH
Confidence 00134566666665554445777766654322111 1100 11111 234567777888
Q ss_pred hHhce---eEeccCCC
Q 005965 371 NQYDV---ALSIGDGL 383 (667)
Q Consensus 371 k~YDV---tlSLGDGL 383 (667)
+++.+ .|++|-|+
T Consensus 220 ~~~g~~~~~idiGGG~ 235 (398)
T TIGR03099 220 ESAPAPVRVINIGGGF 235 (398)
T ss_pred HHhCCCCCEEEeCCcc
Confidence 87665 58999998
No 28
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=81.17 E-value=6.5 Score=40.56 Aligned_cols=182 Identities=15% Similarity=0.097 Sum_probs=95.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEec-----cccccccccccCcccCccc--------------cccHHHHHHHHHcCC
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHA-----GVLLRYIPLTAKRMTGIVS--------------RGGSIHAKWCLAYHK 355 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHa-----Gv~~~~l~~~~~RvtgIVS--------------RGGSi~a~Wml~h~~ 355 (667)
..++++..++..++|.++|.|++=|=+ |...-..+..-.|+..+|. .==. .+.=++.++.
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~-v~e~al~~G~ 97 (257)
T cd00739 19 RFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDTFRAE-VARAALEAGA 97 (257)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHH-HHHHHHHhCC
Confidence 348899999999999999999999953 3221000001122222221 1111 1222232221
Q ss_pred c--Cc-hhhhH-HHHHHHHhHhceeEeccC--CCCCCCccCCCc-HHHHHHH-HHHHHHHHHHHhcCC---eEEeeCCCC
Q 005965 356 E--NF-AYEHW-DEILDICNQYDVALSIGD--GLRPGSIYDAND-TAQFAEL-LTQGELTRRAWDKDV---QVMNEGPGH 424 (667)
Q Consensus 356 E--Np-LYe~F-D~ileI~k~YDVtlSLGD--GLRPG~iaDA~D-~AQ~~EL-~~LGEL~krA~e~gV---QVMIEGPGH 424 (667)
. |- -...+ +++++++++|++.+=+=. | .|....+-.+ ..-+.|. ..+-++.++|.++|| ++++ =||+
T Consensus 98 ~iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g-~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~-DPg~ 175 (257)
T cd00739 98 DIINDVSGGSDDPAMLEVAAEYGAPLVLMHMRG-TPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIIL-DPGI 175 (257)
T ss_pred CEEEeCCCCCCChHHHHHHHHcCCCEEEECCCC-CCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE-ecCC
Confidence 1 10 01122 899999999987776632 3 3433211000 0012333 556788999999999 5555 4677
Q ss_pred CCCCchHHHHHHHHHh---c-CCCCccccCc-------cccccCCCchhHHHhHHHHHhhhccccee
Q 005965 425 IPMHKIPENMQKQLEW---C-NEAPFYTLGP-------LTTDIAPGYDHITSAIGAANIGALGTALL 480 (667)
Q Consensus 425 VPl~~I~~Nv~lqk~l---C-~~APfYvLGP-------LvTDIApGYDHItsAIGaA~aa~~GadfL 480 (667)
-....-+.|+++-+.+ . -+.|. ++|. -+|+--+.=-+..++.=++++...||++|
T Consensus 176 gf~ks~~~~~~~l~~i~~l~~~~~pi-l~G~SrkSfig~~~~~~~~~r~~~t~~~~~~~~~~Ga~ii 241 (257)
T cd00739 176 GFGKTPEHNLELLRRLDELKQLGLPV-LVGASRKSFIGALLGREPKDRDWGTLALSALAAANGADIV 241 (257)
T ss_pred CcccCHHHHHHHHHHHHHHHhCCCcE-EEEecccHHHHHhcCCCccccchhHHHHHHHHHHcCCCEE
Confidence 6655544444433322 1 26786 3444 23343333233444444566777888876
No 29
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=80.49 E-value=58 Score=31.52 Aligned_cols=179 Identities=16% Similarity=0.138 Sum_probs=89.2
Q ss_pred CCCChHHHHHHHHHHHHhCCcEe----eecCCCCC---hHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHH
Q 005965 232 VASSIEEEVYKVQWATMWGADTV----MDLSTGRH---IHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRD 304 (667)
Q Consensus 232 ~~~~ieeEveKl~~A~~~GADtV----MDLSTGgd---i~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d 304 (667)
...|+..=.+.++.+.++|+|.| ||.+.-.+ .-+.-++|.+.++.+++ |++.= + +.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-v~l~v-----~------d~~~--- 75 (220)
T PRK05581 11 LSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLD-VHLMV-----E------NPDR--- 75 (220)
T ss_pred hcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEE-EEeee-----C------CHHH---
Confidence 34455555567778899999985 55544323 23334444454443321 22211 0 2233
Q ss_pred HHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCc----hhhhHHHHHHHHhHhceeEecc
Q 005965 305 TLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENF----AYEHWDEILDICNQYDVALSIG 380 (667)
Q Consensus 305 ~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENp----LYe~FD~ileI~k~YDVtlSLG 380 (667)
.++.-++-|+|.+++|.+-. +..... .++++.++...= .++.++++.++...-| -+=+
T Consensus 76 ~i~~~~~~g~d~v~vh~~~~-~~~~~~---------------~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d-~i~~- 137 (220)
T PRK05581 76 YVPDFAKAGADIITFHVEAS-EHIHRL---------------LQLIKSAGIKAGLVLNPATPLEPLEDVLDLLD-LVLL- 137 (220)
T ss_pred HHHHHHHcCCCEEEEeeccc-hhHHHH---------------HHHHHHcCCEEEEEECCCCCHHHHHHHHhhCC-EEEE-
Confidence 34555688999999999854 222111 444444443300 1345677777765556 2223
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhc--CCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCcccc
Q 005965 381 DGLRPGSIYDANDTAQFAELLTQGELTRRAWDK--DVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTT 454 (667)
Q Consensus 381 DGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~--gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvT 454 (667)
+++.||--..+.+..-+..+..+-+++ -++ ++.|++=| |= +. +|+..-.+ .++-..+.|--.+
T Consensus 138 ~~~~~g~tg~~~~~~~~~~i~~~~~~~---~~~~~~~~i~v~G-GI---~~--~nv~~l~~--~GaD~vvvgSai~ 202 (220)
T PRK05581 138 MSVNPGFGGQKFIPEVLEKIRELRKLI---DERGLDILIEVDG-GI---NA--DNIKECAE--AGADVFVAGSAVF 202 (220)
T ss_pred EEECCCCCcccccHHHHHHHHHHHHHH---HhcCCCceEEEEC-CC---CH--HHHHHHHH--cCCCEEEEChhhh
Confidence 356676655555543333333222222 223 35566777 52 22 35544333 3455566554433
No 30
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=80.43 E-value=19 Score=33.18 Aligned_cols=76 Identities=17% Similarity=0.096 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHhHhceeE-eccCCCCCCC----ccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCC---CCCCCchH
Q 005965 360 YEHWDEILDICNQYDVAL-SIGDGLRPGS----IYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPG---HIPMHKIP 431 (667)
Q Consensus 360 Ye~FD~ileI~k~YDVtl-SLGDGLRPG~----iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPG---HVPl~~I~ 431 (667)
-..++++.+++++|++.+ ++.=..+... ..+++|+ --.-+..+-+..+.|.+.|+..|+=.+| +-+-...+
T Consensus 26 ~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~ 104 (213)
T PF01261_consen 26 DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTE 104 (213)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHH
T ss_pred hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHH
Confidence 568999999999999993 3332233333 2577877 5566778899999999999999999999 44444444
Q ss_pred HHHHH
Q 005965 432 ENMQK 436 (667)
Q Consensus 432 ~Nv~l 436 (667)
++.+.
T Consensus 105 ~~~~~ 109 (213)
T PF01261_consen 105 ENWER 109 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 31
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=79.62 E-value=6.6 Score=38.74 Aligned_cols=96 Identities=16% Similarity=0.145 Sum_probs=51.6
Q ss_pred CCceeE--eeccccCCCCCChHHHHHHHHHHHHhCCcEe-eecCCCC--------ChHHHHHHHHhcCCCCc-ccchhhh
Q 005965 218 NFLVKV--NANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTGR--------HIHETREWILRNSAVPV-GTVPIYQ 285 (667)
Q Consensus 218 gl~tKV--NANIGtS~~~~~ieeEveKl~~A~~~GADtV-MDLSTGg--------di~~~R~~Il~nspvPV-GTVPIYq 285 (667)
++.+++ ..+||.. ..+++.-+..++.|++.|||.| |-+..|. ++.++++.- +...+|+ -.+..+.
T Consensus 57 ~~i~~~~~~~~i~~p--~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~-~~~g~~~iie~~~~g 133 (235)
T cd00958 57 PLIVKLNGSTSLSPK--DDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEA-HKYGLPLIAWMYPRG 133 (235)
T ss_pred cEEEEECCCCCCCCC--CCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHH-HHcCCCEEEEEeccC
Confidence 444444 4455543 4566666677889999999976 3344443 222233221 2223332 0111110
Q ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEec
Q 005965 286 ALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHA 321 (667)
Q Consensus 286 Al~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHa 321 (667)
+ .....++.+.+....+.-++.|.||+-+..
T Consensus 134 ----~-~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~ 164 (235)
T cd00958 134 ----P-AVKNEKDPDLIAYAARIGAELGADIVKTKY 164 (235)
T ss_pred ----C-cccCccCHHHHHHHHHHHHHHCCCEEEecC
Confidence 0 011235666666667778899999999853
No 32
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=79.41 E-value=2.7 Score=46.99 Aligned_cols=280 Identities=19% Similarity=0.178 Sum_probs=148.5
Q ss_pred ChHHHHHHHHHHHHhCCcEeeecCCC----CChHHHHHHHHhcC----CCCcccchhhhHHHHhcCCCCCCCHHHHHHHH
Q 005965 235 SIEEEVYKVQWATMWGADTVMDLSTG----RHIHETREWILRNS----AVPVGTVPIYQALEKVDGIAENLSWEVFRDTL 306 (667)
Q Consensus 235 ~ieeEveKl~~A~~~GADtVMDLSTG----gdi~~~R~~Il~ns----pvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~i 306 (667)
.+++.++-++.-.+.|...|.=|..- -+-.+-=+..|+.+ +=..+-+|+ ..-.++.+++.+
T Consensus 26 ~~~e~~~~l~~l~~~g~~dvl~ltiDsytr~~~~~~a~~~l~~~~~~~~~~lnG~P~-----------v~~g~~~~R~l~ 94 (428)
T cd00245 26 LLEEHIELLRTLQEEGAADVLPLTIDSYTRVNDYEEAEEGLEESIKAGKSLLNGFPI-----------VNHGVKTCRKLL 94 (428)
T ss_pred CHHHHHHHHHHHHhcCCCCeeccccccchhhhhhHHHHHHHHhhhhcCccccCCCCc-----------ccccHHHHHHHH
Confidence 57777777777777785555533332 22222224444444 223455554 223334555554
Q ss_pred HHHHhcCCCEEE-Eecccccccccccc-CcccCccccccHHHHHHHHHcCCcCchh---hhH---HHHHHHHhHhceeEe
Q 005965 307 IEQAEQGVDYFT-IHAGVLLRYIPLTA-KRMTGIVSRGGSIHAKWCLAYHKENFAY---EHW---DEILDICNQYDVALS 378 (667)
Q Consensus 307 eeQAeqGVDfmT-IHaGv~~~~l~~~~-~RvtgIVSRGGSi~a~Wml~h~~ENpLY---e~F---D~ileI~k~YDVtlS 378 (667)
+ +|||=- +-|| |.+...+.+ -=-+|+-|--|.-+ .||+-..+-=||= .+| |+||..-.+.+|.+-
T Consensus 95 ~-----~~~~PlqvRhG-t~d~~~l~e~~~a~g~~a~egg~i-sy~~py~k~~~Le~si~~wqy~~rl~~~y~e~gv~in 167 (428)
T cd00245 95 E-----GVDFPVQVRHG-TPDARLLAEIAIASGFDATEGGPI-SYNLPYSKNVPLEKSIENWQYCDRLVGFYEENGVPIN 167 (428)
T ss_pred H-----hCCCCEeeccC-CccHHHHHHHHHHhCcccccccce-eeccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceec
Confidence 4 345433 4444 222222211 01122322222221 3665555444542 355 777777777777765
Q ss_pred ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCC-CCCC-CchHHHHHHHHHhcCC------C------
Q 005965 379 IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPG-HIPM-HKIPENMQKQLEWCNE------A------ 444 (667)
Q Consensus 379 LGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPG-HVPl-~~I~~Nv~lqk~lC~~------A------ 444 (667)
=+-+=|-.--+..+.-.++ +-.|-.| .|++.||.-+.=+=+ |.-+ .+|. -++--++++.. +
T Consensus 168 -~E~fg~l~~~l~pptla~a-iaylea~--la~glgV~~lS~~f~~~~n~~qDIA-k~RA~RrL~a~~l~efG~~d~~~~ 242 (428)
T cd00245 168 -REPFGPLTGTLVPPSILIA-IQILEAL--LAAEQGVKSISVGYAQQGNLTQDIA-ALRALRELAKEYLPKYGYKDVDIH 242 (428)
T ss_pred -ccCCcCcccCcCCcHHHHH-HHHHHHH--HHccCCCCEEEEEeecCCCHHHHHH-HHHHHHHHHHHHHHHcCCCCeEEE
Confidence 2333332222333322221 1111122 456678766544322 2222 2222 12222222211 1
Q ss_pred -Ccc-ccCccccccCCCchhHHHhHHHHHhhhcccceeeecCcccccCCCChhHHHHHHH-HHHHHHHHhhhhcCC-cc-
Q 005965 445 -PFY-TLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVI-AYKIAAHAADLAKGH-PL- 519 (667)
Q Consensus 445 -PfY-vLGPLvTDIApGYDHItsAIGaA~aa~~GadfLCYVTPaEHLgLP~~eDVreGVI-A~kIAAHaaDlaKg~-p~- 519 (667)
-|+ -+|..+.|-.-.|-+|+. ++..|+..||+.|=-.|+.|=+++|+.++++.++- +-+|.+|-.++..-. +.
T Consensus 243 ~~fht~~ggfplt~qqa~~nI~r--~a~aAvLgGaqslhvkt~dEA~giPT~ea~~~ALr~Tqqii~~e~g~~~~~s~~V 320 (428)
T cd00245 243 TVFHQWMGGFPRDESGAFGLIGY--AATIAALSGATKVIVKTPDEAHGIPTIEANVAGLKATATVLNMLRGQKFPPSEAI 320 (428)
T ss_pred EEEEeccCCCCcchHHHHHHHHH--HHHHHHHcCCCEEEeCChhhhccCCCHHHHHHHHHHHHHHHHHhcCCCccccHHH
Confidence 122 268888888889999999 88888899999999999999999999999999999 888888876654221 11
Q ss_pred hhhHHHHHHHHHhhcCHHHH
Q 005965 520 AQTWDDALSKARFEFRWMDQ 539 (667)
Q Consensus 520 A~~rD~~mS~AR~~~dWe~Q 539 (667)
..+-|.-..+|+.-++.-..
T Consensus 321 E~~t~~ie~Ea~~ild~I~e 340 (428)
T cd00245 321 EQEEEIIKAEVKAILDKVFE 340 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 12334455666666655443
No 33
>PRK09989 hypothetical protein; Provisional
Probab=79.38 E-value=9.9 Score=37.88 Aligned_cols=77 Identities=14% Similarity=0.169 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHhHhcee-EeccCCCCCCCccCCCcHHHHH--HHHHHHHHHHHHHhcCCeEEeeC--CC---CCCCCchH
Q 005965 360 YEHWDEILDICNQYDVA-LSIGDGLRPGSIYDANDTAQFA--ELLTQGELTRRAWDKDVQVMNEG--PG---HIPMHKIP 431 (667)
Q Consensus 360 Ye~FD~ileI~k~YDVt-lSLGDGLRPG~iaDA~D~AQ~~--EL~~LGEL~krA~e~gVQVMIEG--PG---HVPl~~I~ 431 (667)
-+.+++.+++|++.++. +.+.-|..| +..+..+.. =...|.+|+++|.+.||++.+|+ ++ |.-++...
T Consensus 84 ~~~l~~~i~~A~~lg~~~v~v~~g~~~----~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~~~~~~~~~~~ 159 (258)
T PRK09989 84 RADIDLALEYALALNCEQVHVMAGVVP----AGEDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPGVKPHYLFSSQY 159 (258)
T ss_pred HHHHHHHHHHHHHhCcCEEEECccCCC----CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCccCCHH
Confidence 46789999999999984 544444444 233322222 24678999999999999999998 22 34566666
Q ss_pred HHHHHHHHh
Q 005965 432 ENMQKQLEW 440 (667)
Q Consensus 432 ~Nv~lqk~l 440 (667)
.-.++.+++
T Consensus 160 ~~~~ll~~v 168 (258)
T PRK09989 160 QALAIVEEV 168 (258)
T ss_pred HHHHHHHHc
Confidence 555665553
No 34
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=77.63 E-value=29 Score=36.10 Aligned_cols=123 Identities=22% Similarity=0.288 Sum_probs=75.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCcc--------------ccccHHHHHHHHHc-CC---
Q 005965 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIV--------------SRGGSIHAKWCLAY-HK--- 355 (667)
Q Consensus 294 ~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIV--------------SRGGSi~a~Wml~h-~~--- 355 (667)
+.+-+++.+.+..++|.++|.|++-|=+++..+. ...|+..+| |.=-..+.+=+.+. ++
T Consensus 19 ~~~~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~e---E~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~~iI 95 (261)
T PRK07535 19 IEAKDAAFIQKLALKQAEAGADYLDVNAGTAVEE---EPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAKGPPLI 95 (261)
T ss_pred HHcCCHHHHHHHHHHHHHCCCCEEEECCCCCchh---HHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCCCEE
Confidence 4567889999999999999999999999975321 011222222 22233333333321 11
Q ss_pred --cCchhhhHHHHHHHHhHhceeEec--cC--CCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCC--eEEeeCCCCCCC
Q 005965 356 --ENFAYEHWDEILDICNQYDVALSI--GD--GLRPGSIYDANDTAQFAELLTQGELTRRAWDKDV--QVMNEGPGHIPM 427 (667)
Q Consensus 356 --ENpLYe~FD~ileI~k~YDVtlSL--GD--GLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gV--QVMIEGPGHVPl 427 (667)
=|-.-+.++++++++++|++.+-+ -| | -|. ++.+ -+..+-+++++|.++|| .=+|=-||--|+
T Consensus 96 NsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g-~P~---t~~~-----~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~ 166 (261)
T PRK07535 96 NSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTG-IPK---DAED-----RLAVAKELVEKADEYGIPPEDIYIDPLVLPL 166 (261)
T ss_pred EeCCCCCccCHHHHHHHHHhCCCEEEEecCCCC-CCC---CHHH-----HHHHHHHHHHHHHHcCCCHhHEEEeCCCCcc
Confidence 111114588999999999876653 32 2 132 1111 15666888999999999 244446777775
Q ss_pred C
Q 005965 428 H 428 (667)
Q Consensus 428 ~ 428 (667)
.
T Consensus 167 ~ 167 (261)
T PRK07535 167 S 167 (261)
T ss_pred c
Confidence 3
No 35
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=77.24 E-value=25 Score=37.49 Aligned_cols=136 Identities=21% Similarity=0.244 Sum_probs=70.4
Q ss_pred EeeccccCCCCCChHHHHHHHHHHHHhCCcEeeecC-------CCC--ChH---HHHHHHHhcCCCCcccchhhhHHHHh
Q 005965 223 VNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLS-------TGR--HIH---ETREWILRNSAVPVGTVPIYQALEKV 290 (667)
Q Consensus 223 VNANIGtS~~~~~ieeEveKl~~A~~~GADtVMDLS-------TGg--di~---~~R~~Il~nspvPVGTVPIYqAl~k~ 290 (667)
+.+|+|.........+++.++..-+++.|..| .|. ..+ +++ ++=++|.+..++||. +..+
T Consensus 116 ~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i-~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVi-------vK~~ 187 (333)
T TIGR02151 116 LIANIGAPQLVEGGPEEAQEAIDMIEADALAI-HLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVI-------VKEV 187 (333)
T ss_pred EEeecCchhhccccHHHHHHHHHHhcCCCEEE-cCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEE-------EEec
Confidence 45577754443322556666665555444443 442 112 454 455667777778876 1111
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCEEEEeccc--cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHH
Q 005965 291 DGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGV--LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILD 368 (667)
Q Consensus 291 ~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv--~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ile 368 (667)
| ..++ .+....-.+.|||+++||.+- +...++. -|..... + |+++..|-.. -.+.|.+
T Consensus 188 -g--~g~~----~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~--~r~~~~~-~-~~~~~~~g~~---------t~~~l~~ 247 (333)
T TIGR02151 188 -G--FGIS----KEVAKLLADAGVSAIDVAGAGGTSWAQVEN--YRAKGSN-L-ASFFNDWGIP---------TAASLLE 247 (333)
T ss_pred -C--CCCC----HHHHHHHHHcCCCEEEECCCCCCcccchhh--hcccccc-c-chhhhcccHh---------HHHHHHH
Confidence 2 1233 344555567899999998631 2122221 1211110 0 5566555432 3466777
Q ss_pred HHh-HhceeEeccCCCCCC
Q 005965 369 ICN-QYDVALSIGDGLRPG 386 (667)
Q Consensus 369 I~k-~YDVtlSLGDGLRPG 386 (667)
+.+ ..++.+-.--|+|-|
T Consensus 248 ~~~~~~~ipVIasGGI~~~ 266 (333)
T TIGR02151 248 VRSDAPDAPIIASGGLRTG 266 (333)
T ss_pred HHhcCCCCeEEEECCCCCH
Confidence 765 346666666666544
No 36
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=76.91 E-value=39 Score=35.54 Aligned_cols=115 Identities=11% Similarity=0.095 Sum_probs=79.0
Q ss_pred HHHHHhCCcEeeecCC-CCChHHHHHHHH--hcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 005965 244 QWATMWGADTVMDLST-GRHIHETREWIL--RNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (667)
Q Consensus 244 ~~A~~~GADtVMDLST-Ggdi~~~R~~Il--~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIH 320 (667)
..-.++|..+|..|.. .-|..++.+.=| ..-|+|-|++|--+.+ +.|++.|+++.++|= -+.||
T Consensus 110 ~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~~~i------------~~~l~~i~~~l~~g~-~VaVH 176 (241)
T PTZ00393 110 KEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTVDIV------------SNWLTIVNNVIKNNR-AVAVH 176 (241)
T ss_pred HHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCHHHH------------HHHHHHHHHHHhcCC-eEEEE
Confidence 3445799999999844 224455554433 3457888888864433 456666766666664 58899
Q ss_pred ccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHH
Q 005965 321 AGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAEL 400 (667)
Q Consensus 321 aGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL 400 (667)
|- +| +.|-|.++|.|++.++- ..++.++..|+ .|||+| + ..|++=|
T Consensus 177 C~---------AG-----lGRTGtl~AayLI~~Gm------speeAI~~VR~----------~RPgAI---n-~~Q~~fL 222 (241)
T PTZ00393 177 CV---------AG-----LGRAPVLASIVLIEFGM------DPIDAIVFIRD----------RRKGAI---N-KRQLQFL 222 (241)
T ss_pred CC---------CC-----CCHHHHHHHHHHHHcCC------CHHHHHHHHHH----------HCCCCC---C-HHHHHHH
Confidence 92 33 37899999999997542 57888888886 699998 3 4687766
Q ss_pred HHHHH
Q 005965 401 LTQGE 405 (667)
Q Consensus 401 ~~LGE 405 (667)
...-+
T Consensus 223 ~~y~~ 227 (241)
T PTZ00393 223 KAYKK 227 (241)
T ss_pred HHHHH
Confidence 65544
No 37
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=76.88 E-value=21 Score=40.50 Aligned_cols=81 Identities=25% Similarity=0.342 Sum_probs=54.9
Q ss_pred cCCceeEeeccccCCCCCChHHHHHHHHHHHHhCCcEe-eecCCCCChH--HHHHHHHhcCC-CCc--ccchhhhHHHHh
Q 005965 217 RNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTGRHIH--ETREWILRNSA-VPV--GTVPIYQALEKV 290 (667)
Q Consensus 217 ~gl~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADtV-MDLSTGgdi~--~~R~~Il~nsp-vPV--GTVPIYqAl~k~ 290 (667)
..-+.-|-|-||++. +..|.++..+++|+|-| +|.+.|..+. ++=+||-+..| ++| |+|--.+..
T Consensus 233 ~~~~l~vgaavg~~~------~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a--- 303 (505)
T PLN02274 233 KDGKLLVGAAIGTRE------SDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQA--- 303 (505)
T ss_pred CCCCEEEEEEEcCCc------cHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHH---
Confidence 344667888898854 34678888899999987 5998887777 66667766554 443 666443332
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCEE--EEecc
Q 005965 291 DGIAENLSWEVFRDTLIEQAEQGVDYF--TIHAG 322 (667)
Q Consensus 291 ~g~~~~lt~e~~~d~ieeQAeqGVDfm--TIHaG 322 (667)
. .-.+.|+|++ ++|.|
T Consensus 304 ------------~----~a~~aGaD~i~vg~g~G 321 (505)
T PLN02274 304 ------------Q----NLIQAGVDGLRVGMGSG 321 (505)
T ss_pred ------------H----HHHHcCcCEEEECCCCC
Confidence 2 2345899998 45655
No 38
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=76.53 E-value=21 Score=36.24 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=55.5
Q ss_pred HHHHHH-HHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005965 237 EEEVYK-VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVD 315 (667)
Q Consensus 237 eeEveK-l~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVD 315 (667)
.++++. .+.|.+.|||-|- .|+.++++.+|+.. +.+++ |++-+ |.+..-|.+++++.+.+-.+.|++
T Consensus 155 ~~~~~~~~~~a~~~GADyik-t~~~~~~~~l~~~~-~~~~i-----PVva~-----GGi~~~~~~~~~~~i~~~~~aGa~ 222 (258)
T TIGR01949 155 PELVAHAARLGAELGADIVK-TPYTGDIDSFRDVV-KGCPA-----PVVVA-----GGPKTNSDREFLQMIKDAMEAGAA 222 (258)
T ss_pred HHHHHHHHHHHHHHCCCEEe-ccCCCCHHHHHHHH-HhCCC-----cEEEe-----cCCCCCCHHHHHHHHHHHHHcCCc
Confidence 356777 4889999999998 67777888888664 45554 44322 445666889999999999999999
Q ss_pred EEEEeccc
Q 005965 316 YFTIHAGV 323 (667)
Q Consensus 316 fmTIHaGv 323 (667)
.+.+=..+
T Consensus 223 Gia~g~~i 230 (258)
T TIGR01949 223 GVAVGRNI 230 (258)
T ss_pred EEehhhHh
Confidence 66654443
No 39
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=76.43 E-value=6.3 Score=42.50 Aligned_cols=106 Identities=21% Similarity=0.185 Sum_probs=63.0
Q ss_pred HHHHHHHHhHhcee-EeccCCCCCCCccCCCcHHHHHHHHHHH----------HHHHHHHhcCCeEEe----eCCCCCC-
Q 005965 363 WDEILDICNQYDVA-LSIGDGLRPGSIYDANDTAQFAELLTQG----------ELTRRAWDKDVQVMN----EGPGHIP- 426 (667)
Q Consensus 363 FD~ileI~k~YDVt-lSLGDGLRPG~iaDA~D~AQ~~EL~~LG----------EL~krA~e~gVQVMI----EGPGHVP- 426 (667)
||+.++++.++.|. +|++ |-+|. |+.+|...| ++++++-+.||-+.| |.-||+.
T Consensus 71 ~~~~l~vi~e~~v~~V~~~-~G~P~---------~~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~G~ 140 (320)
T cd04743 71 RAAQLAVVRAIKPTFALIA-GGRPD---------QARALEAIGISTYLHVPSPGLLKQFLENGARKFIFEGRECGGHVGP 140 (320)
T ss_pred hHHHHHHHHhcCCcEEEEc-CCChH---------HHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEEecCcCcCCCCC
Confidence 78899999999986 4555 33453 455565444 778999999998777 6679996
Q ss_pred ---CCchHHHHHHHHHhc-----CCCCccccCccccccCCCchh-HHHhHHH-------HHhhhcccceeee
Q 005965 427 ---MHKIPENMQKQLEWC-----NEAPFYTLGPLTTDIAPGYDH-ITSAIGA-------ANIGALGTALLCY 482 (667)
Q Consensus 427 ---l~~I~~Nv~lqk~lC-----~~APfYvLGPLvTDIApGYDH-ItsAIGa-------A~aa~~GadfLCY 482 (667)
+-.+++-++.-+... .+-|.+.-|= |+-|.+= -..+.|+ +...+.|+.|||-
T Consensus 141 ~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGG----I~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t 208 (320)
T cd04743 141 RSSFVLWESAIDALLAANGPDKAGKIHLLFAGG----IHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFT 208 (320)
T ss_pred CCchhhHHHHHHHHHHhhcccccCCccEEEEcC----CCCHHHHHHHHHcCCcccccccccEEEEccHHhcc
Confidence 222332222211111 1356655554 3334321 1223333 2678899999874
No 40
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=75.35 E-value=55 Score=33.87 Aligned_cols=156 Identities=17% Similarity=0.210 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHH-HhCCcEeeecCCCCChHHHHHHHHhcCCCCccc--chhhhHHHHhcCCCCCCCHHHHHHHHHH----
Q 005965 236 IEEEVYKVQWAT-MWGADTVMDLSTGRHIHETREWILRNSAVPVGT--VPIYQALEKVDGIAENLSWEVFRDTLIE---- 308 (667)
Q Consensus 236 ieeEveKl~~A~-~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGT--VPIYqAl~k~~g~~~~lt~e~~~d~iee---- 308 (667)
--+.++|+..++ +.|+-.++-|.-+|-...... .. ..|++. +|.+ .....+..||.+++-++|+.
T Consensus 75 ~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~--~~--~~~~~~s~~~~~----~~~~~~~~mt~~ei~~~i~~~~~a 146 (327)
T cd02803 75 QIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNL--TG--GPPPAPSAIPSP----GGGEPPREMTKEEIEQIIEDFAAA 146 (327)
T ss_pred HHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcC--CC--CCccCCCCCCCC----CCCCCCCcCCHHHHHHHHHHHHHH
Confidence 345566665555 457777788876662211000 00 011111 2211 11345678998888776653
Q ss_pred ---HHhcCCCEEEEecc---ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHh-Hhcee--Eec
Q 005965 309 ---QAEQGVDYFTIHAG---VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICN-QYDVA--LSI 379 (667)
Q Consensus 309 ---QAeqGVDfmTIHaG---v~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k-~YDVt--lSL 379 (667)
-.+.|.|.+=||+| +..+.+.-..++.+. ..|||+.-.+ .++.+-.+.|-+.+- .+.|. +|.
T Consensus 147 A~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d--~yGgs~enr~-------r~~~eii~avr~~~g~d~~i~vris~ 217 (327)
T cd02803 147 ARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTD--EYGGSLENRA-------RFLLEIVAAVREAVGPDFPVGVRLSA 217 (327)
T ss_pred HHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCc--ccCCCHHHHH-------HHHHHHHHHHHHHcCCCceEEEEech
Confidence 34579999999997 333344332233343 5799975443 345555555555541 22232 354
Q ss_pred cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 005965 380 GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (667)
Q Consensus 380 GDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (667)
+|....| .+. ...-+|+++..+.|+..+.
T Consensus 218 ~~~~~~g-----~~~------~e~~~la~~l~~~G~d~i~ 246 (327)
T cd02803 218 DDFVPGG-----LTL------EEAIEIAKALEEAGVDALH 246 (327)
T ss_pred hccCCCC-----CCH------HHHHHHHHHHHHcCCCEEE
Confidence 4443222 232 2335566777788887664
No 41
>PRK12677 xylose isomerase; Provisional
Probab=75.31 E-value=9.6 Score=41.56 Aligned_cols=121 Identities=15% Similarity=0.162 Sum_probs=72.6
Q ss_pred HHHHHHHHhCCcEeeecCCC------C-------ChHHHHHHHHhcCCCCcccc-------hhhhH--HHHhcCCCCCCC
Q 005965 241 YKVQWATMWGADTVMDLSTG------R-------HIHETREWILRNSAVPVGTV-------PIYQA--LEKVDGIAENLS 298 (667)
Q Consensus 241 eKl~~A~~~GADtVMDLSTG------g-------di~~~R~~Il~nspvPVGTV-------PIYqA--l~k~~g~~~~lt 298 (667)
|.+..+-++|++.|. |.-. - .+.++|+.+ +...+.|..| |.|.. +.--...+.+..
T Consensus 35 E~v~~~a~~Gf~gVE-lh~~~l~p~~~~~~~~~~~~~~lk~~l-~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~A 112 (384)
T PRK12677 35 EAVHKLAELGAYGVT-FHDDDLVPFGATDAERDRIIKRFKKAL-DETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYA 112 (384)
T ss_pred HHHHHHHHhCCCEEE-ecccccCCCCCChhhhHHHHHHHHHHH-HHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHH
Confidence 677888899999884 4321 1 144555544 5666666654 33321 000001112223
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH--hcee
Q 005965 299 WEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ--YDVA 376 (667)
Q Consensus 299 ~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~--YDVt 376 (667)
-+.+.++|+--++-|++++++|.|..-...+... .+-..| .-+-+.+++|++.+++ |+|.
T Consensus 113 i~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~-----------d~~~a~-------~~~~eaL~~l~~~A~~~G~gV~ 174 (384)
T PRK12677 113 LRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAK-----------DVRAAL-------DRYREAIDLLAAYVKDQGYDLR 174 (384)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccC-----------CHHHHH-------HHHHHHHHHHHHHHHhcCCCcE
Confidence 4567888899999999999999994322111111 122233 2245788999999998 8899
Q ss_pred EeccC
Q 005965 377 LSIGD 381 (667)
Q Consensus 377 lSLGD 381 (667)
|+|=-
T Consensus 175 laIEp 179 (384)
T PRK12677 175 FALEP 179 (384)
T ss_pred EEEcc
Confidence 99977
No 42
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=75.16 E-value=53 Score=31.70 Aligned_cols=118 Identities=11% Similarity=0.051 Sum_probs=66.0
Q ss_pred HHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCC
Q 005965 305 TLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLR 384 (667)
Q Consensus 305 ~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLR 384 (667)
.+++-++.|.||+++|+-... .+-.++++.+++|++-+-++ -+-
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~-----------------------------------~~~~~~i~~~~~~g~~~~~~-~~~ 111 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADD-----------------------------------ATIKGAVKAAKKHGKEVQVD-LIN 111 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCH-----------------------------------HHHHHHHHHHHHcCCEEEEE-ecC
Confidence 455567889999999985311 34467899999998777651 011
Q ss_pred CCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCC--CCc-hHHHHHHHHHhcCCCCccccCccccccCCCch
Q 005965 385 PGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIP--MHK-IPENMQKQLEWCNEAPFYTLGPLTTDIAPGYD 461 (667)
Q Consensus 385 PG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVP--l~~-I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYD 461 (667)
|. + .-+.++.|++.|+..+-=.||.-- ... --..++.-++....- ++.-|=+-..|
T Consensus 112 ~~-----t----------~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~------~i~v~GGI~~~ 170 (206)
T TIGR03128 112 VK-----D----------KVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEA------RVAVAGGINLD 170 (206)
T ss_pred CC-----C----------hHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCC------cEEEECCcCHH
Confidence 11 1 234456677888887765676521 110 111233333333332 22223334556
Q ss_pred hHHHhHHHHHhhhcccceeeecCc
Q 005965 462 HITSAIGAANIGALGTALLCYVTP 485 (667)
Q Consensus 462 HItsAIGaA~aa~~GadfLCYVTP 485 (667)
++... ..+|++.+|..+-
T Consensus 171 n~~~~------~~~Ga~~v~vGsa 188 (206)
T TIGR03128 171 TIPDV------IKLGPDIVIVGGA 188 (206)
T ss_pred HHHHH------HHcCCCEEEEeeh
Confidence 66533 3578998887653
No 43
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=75.14 E-value=1.3e+02 Score=32.89 Aligned_cols=95 Identities=17% Similarity=0.263 Sum_probs=53.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhH---HHHHHHHhH
Q 005965 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHW---DEILDICNQ 372 (667)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~F---D~ileI~k~ 372 (667)
-++.+++.+.+..-.+.|+++..||+=+--..... ..+.+-+ .++++++++
T Consensus 146 Gi~~~~~~~~l~~~~~~~l~~~Gih~HiGS~~~~~--------------------------~~~~~a~~~~~~~~~~~~~ 199 (394)
T cd06831 146 GTTLKNCRHLLECAKELDVQIVGVKFHVSSSCKEY--------------------------QTYVHALSDARCVFDMAEE 199 (394)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEEEECCCCCCCH--------------------------HHHHHHHHHHHHHHHHHHH
Confidence 45667777777666677999999998543222111 1112222 456777777
Q ss_pred hce---eEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHH--hcCCeEEeeCCC
Q 005965 373 YDV---ALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAW--DKDVQVMNEGPG 423 (667)
Q Consensus 373 YDV---tlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~--e~gVQVMIEGPG 423 (667)
++. .|.+|-|+- + +..|-.++.+.+ .++.++-. ..++++++| ||
T Consensus 200 ~g~~l~~ldiGGGf~-~---~~~~~~~~~~~i--~~~l~~~~~~~~~~~li~E-PG 248 (394)
T cd06831 200 FGFKMNMLDIGGGFT-G---SEIQLEEVNHVI--RPLLDVYFPEGSGIQIIAE-PG 248 (394)
T ss_pred CCCCCCEEEeCCCcC-C---CCCCHHHHHHHH--HHHHHHhcCcCCCCEEEEe-CC
Confidence 754 589999993 3 224544444332 23333321 136788887 55
No 44
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=74.68 E-value=57 Score=34.72 Aligned_cols=137 Identities=22% Similarity=0.250 Sum_probs=69.8
Q ss_pred EeeccccCCCCCChHHHHHHHHHHHHhCCcEe-eecCC---------CCChH---HHHHHHHhcCCCCcccchhhhHHHH
Q 005965 223 VNANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLST---------GRHIH---ETREWILRNSAVPVGTVPIYQALEK 289 (667)
Q Consensus 223 VNANIGtS~~~~~ieeEveKl~~A~~~GADtV-MDLST---------Ggdi~---~~R~~Il~nspvPVGTVPIYqAl~k 289 (667)
+.+|+|.......-.+++.++...+ +||.+ ..|.. ..|.+ +.=++|+++.++||. .|
T Consensus 115 ~~~Nl~~~~~~~~~~~~~~~~i~~~--~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVi--------vK 184 (326)
T cd02811 115 LIANLGAVQLNGYGVEEARRAVEMI--EADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVI--------VK 184 (326)
T ss_pred EEeecCccccCCCCHHHHHHHHHhc--CCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEE--------EE
Confidence 4557775543222234444444434 55554 24422 22454 445667777788776 22
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCCCEEEEecc--ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHH
Q 005965 290 VDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAG--VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEIL 367 (667)
Q Consensus 290 ~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaG--v~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~il 367 (667)
..| ..+|. +....-.+.|||++.++.. .+.-.++.. |-... -.| ......+.-+.-.+.|.
T Consensus 185 ~~g--~g~s~----~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~--r~~~~--------~~~-~~~~~~~~g~~t~~~l~ 247 (326)
T cd02811 185 EVG--FGISR----ETAKRLADAGVKAIDVAGAGGTSWARVENY--RAKDS--------DQR-LAEYFADWGIPTAASLL 247 (326)
T ss_pred ecC--CCCCH----HHHHHHHHcCCCEEEECCCCCCcccccccc--ccccc--------ccc-cccccccccccHHHHHH
Confidence 112 23554 4445556789999999752 222222211 11110 012 11111122334467888
Q ss_pred HHHhHh-ceeEeccCCCCCC
Q 005965 368 DICNQY-DVALSIGDGLRPG 386 (667)
Q Consensus 368 eI~k~Y-DVtlSLGDGLRPG 386 (667)
++.+.. ++.+-.-=|+|-|
T Consensus 248 ~~~~~~~~ipIiasGGIr~~ 267 (326)
T cd02811 248 EVRSALPDLPLIASGGIRNG 267 (326)
T ss_pred HHHHHcCCCcEEEECCCCCH
Confidence 888777 7888887777755
No 45
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=74.58 E-value=37 Score=36.77 Aligned_cols=109 Identities=18% Similarity=0.242 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHcC-------CCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHHH
Q 005965 170 GVITEEMLYCATREK-------LDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYK 242 (667)
Q Consensus 170 GiIT~EMe~VA~~E~-------i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKVNANIGtS~~~~~ieeEveK 242 (667)
..|..+|..+|.+.| +++|.....+ | ..| |. +| -||+++|++.+ +.++
T Consensus 47 t~iN~~LA~~a~~~G~~~~~~k~~~e~~~~~~---r-----~~~-----~~----~l--~v~~~vg~~~~------~~~~ 101 (326)
T PRK05458 47 TIIDEKIAEWLAENGYFYIMHRFDPEARIPFI---K-----DMH-----EQ----GL--IASISVGVKDD------EYDF 101 (326)
T ss_pred chhHHHHHHHHHHcCCEEEEecCCHHHHHHHH---H-----hcc-----cc----cc--EEEEEecCCHH------HHHH
Confidence 378889999999987 4777766666 2 111 11 33 47999987652 3455
Q ss_pred HHHHHHhCC--cEee-ecCCCC--ChHHHHHHHHhcCC---CCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 005965 243 VQWATMWGA--DTVM-DLSTGR--HIHETREWILRNSA---VPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (667)
Q Consensus 243 l~~A~~~GA--DtVM-DLSTGg--di~~~R~~Il~nsp---vPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGV 314 (667)
+..-+++|+ |.|- |.+-|. .+.++=++|-+..| |.+|+|= |.|+..+ -.+.||
T Consensus 102 ~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~---------------t~e~a~~----l~~aGa 162 (326)
T PRK05458 102 VDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG---------------TPEAVRE----LENAGA 162 (326)
T ss_pred HHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC---------------CHHHHHH----HHHcCc
Confidence 555566655 9885 776652 22333345544444 4455442 3343333 346899
Q ss_pred CEEEEecc
Q 005965 315 DYFTIHAG 322 (667)
Q Consensus 315 DfmTIHaG 322 (667)
|++.+|-|
T Consensus 163 d~i~vg~~ 170 (326)
T PRK05458 163 DATKVGIG 170 (326)
T ss_pred CEEEECCC
Confidence 99876643
No 46
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=74.33 E-value=90 Score=31.54 Aligned_cols=142 Identities=14% Similarity=0.082 Sum_probs=80.3
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCcEeeecCCCCChHHHHHHH--HhcCCCCcccchhhhHHHHhcCCCCCC
Q 005965 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWI--LRNSAVPVGTVPIYQALEKVDGIAENL 297 (667)
Q Consensus 220 ~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADtVMDLSTGgdi~~~R~~I--l~nspvPVGTVPIYqAl~k~~g~~~~l 297 (667)
++.+++++|.+ +.++-++.++.+.+.|. +.+-+-.|.+.++-.+.| +|+. ++- .++| ...++ ...
T Consensus 74 ~i~~~~~~~~~----~~~~~~~~~~~~~~~G~-~~~KiKvg~~~~~d~~~v~~vr~~-~g~-~~~l---~vDan---~~~ 140 (265)
T cd03315 74 RVRVAHMLGLG----EPAEVAEEARRALEAGF-RTFKLKVGRDPARDVAVVAALREA-VGD-DAEL---RVDAN---RGW 140 (265)
T ss_pred ceEEEEEecCC----CHHHHHHHHHHHHHCCC-CEEEEecCCCHHHHHHHHHHHHHh-cCC-CCEE---EEeCC---CCc
Confidence 34556666543 46666677777888896 445666666543222211 1111 100 1222 00112 335
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchh-hhHHHHHHHHhHhcee
Q 005965 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY-EHWDEILDICNQYDVA 376 (667)
Q Consensus 298 t~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLY-e~FD~ileI~k~YDVt 376 (667)
|.++.++.+..-.+.|++|+-- |+- .+++.+-++.+..++.
T Consensus 141 ~~~~a~~~~~~l~~~~i~~iEe--------------------------------------P~~~~d~~~~~~l~~~~~ip 182 (265)
T cd03315 141 TPKQAIRALRALEDLGLDYVEQ--------------------------------------PLPADDLEGRAALARATDTP 182 (265)
T ss_pred CHHHHHHHHHHHHhcCCCEEEC--------------------------------------CCCcccHHHHHHHHhhCCCC
Confidence 6777777777666778888721 221 2467777788888888
Q ss_pred EeccCCCCCCCccCCCcHHHHHHH-------------------HHHHHHHHHHHhcCCeEEee
Q 005965 377 LSIGDGLRPGSIYDANDTAQFAEL-------------------LTQGELTRRAWDKDVQVMNE 420 (667)
Q Consensus 377 lSLGDGLRPG~iaDA~D~AQ~~EL-------------------~~LGEL~krA~e~gVQVMIE 420 (667)
+.+|-.+. +..++.++ ...-++++.|+++|+.+|+-
T Consensus 183 ia~dE~~~--------~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 183 IMADESAF--------TPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVG 237 (265)
T ss_pred EEECCCCC--------CHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEec
Confidence 88876542 22233332 33346778889999999875
No 47
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=73.94 E-value=8.6 Score=33.24 Aligned_cols=92 Identities=13% Similarity=0.194 Sum_probs=68.8
Q ss_pred CcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHh
Q 005965 333 KRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWD 412 (667)
Q Consensus 333 ~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e 412 (667)
-++.+|+++...-...+....+-. .|+.++++++-- +.|+++--... ..-.++++.|-+
T Consensus 26 ~~v~~v~d~~~~~~~~~~~~~~~~--~~~~~~~ll~~~-~~D~V~I~tp~------------------~~h~~~~~~~l~ 84 (120)
T PF01408_consen 26 FEVVAVCDPDPERAEAFAEKYGIP--VYTDLEELLADE-DVDAVIIATPP------------------SSHAEIAKKALE 84 (120)
T ss_dssp EEEEEEECSSHHHHHHHHHHTTSE--EESSHHHHHHHT-TESEEEEESSG------------------GGHHHHHHHHHH
T ss_pred cEEEEEEeCCHHHHHHHHHHhccc--chhHHHHHHHhh-cCCEEEEecCC------------------cchHHHHHHHHH
Confidence 388999999988877775555444 999999888755 57766543221 124578899999
Q ss_pred cCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCcc
Q 005965 413 KDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFY 447 (667)
Q Consensus 413 ~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfY 447 (667)
+|+-|++|-|--.-+.+.++=+++.++ ++.+++
T Consensus 85 ~g~~v~~EKP~~~~~~~~~~l~~~a~~--~~~~~~ 117 (120)
T PF01408_consen 85 AGKHVLVEKPLALTLEEAEELVEAAKE--KGVKVM 117 (120)
T ss_dssp TTSEEEEESSSSSSHHHHHHHHHHHHH--HTSCEE
T ss_pred cCCEEEEEcCCcCCHHHHHHHHHHHHH--hCCEEE
Confidence 999999999998888888888887776 444443
No 48
>PRK09989 hypothetical protein; Provisional
Probab=73.79 E-value=34 Score=34.18 Aligned_cols=136 Identities=11% Similarity=0.019 Sum_probs=74.4
Q ss_pred eEeeccccCCCCCChHHHHHHHHHHHHhCCcEeee-cCCCCChHHHHHHHHhcCCCCcc--cchhhhHHHHhc-C-CCCC
Q 005965 222 KVNANIGNSAVASSIEEEVYKVQWATMWGADTVMD-LSTGRHIHETREWILRNSAVPVG--TVPIYQALEKVD-G-IAEN 296 (667)
Q Consensus 222 KVNANIGtS~~~~~ieeEveKl~~A~~~GADtVMD-LSTGgdi~~~R~~Il~nspvPVG--TVPIYqAl~k~~-g-~~~~ 296 (667)
|--||+. -+..+..-| +.++.+-++|=|.|== ...+-+..++|+.+ +...+.+- +.|.- .+.... + ....
T Consensus 3 ~~~~~~~--~~~~~~~l~-~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l-~~~Gl~v~~~~~~~~-~~~~~~~~~~~~~ 77 (258)
T PRK09989 3 RFAANLS--MMFTEVPFI-ERFAAARKAGFDAVEFLFPYDYSTLQIQKQL-EQNHLTLALFNTAPG-DINAGEWGLSALP 77 (258)
T ss_pred ceeeehh--hhhcCCCHH-HHHHHHHHcCCCEEEECCcccCCHHHHHHHH-HHcCCcEEEeccCCC-ccCCCCCcccCCC
Confidence 4456663 333333222 6778888999998842 22346778888876 33333322 11210 000000 0 0011
Q ss_pred CCH----HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH
Q 005965 297 LSW----EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ 372 (667)
Q Consensus 297 lt~----e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~ 372 (667)
-.. +.+...|+.-.+-|++++.+|+|..... .+--..| +-+.+.+.++++++++
T Consensus 78 ~~~~~~~~~l~~~i~~A~~lg~~~v~v~~g~~~~~---------------~~~~~~~-------~~~~~~l~~l~~~a~~ 135 (258)
T PRK09989 78 GREHEARADIDLALEYALALNCEQVHVMAGVVPAG---------------EDAERYR-------AVFIDNLRYAADRFAP 135 (258)
T ss_pred ccHHHHHHHHHHHHHHHHHhCcCEEEECccCCCCC---------------CCHHHHH-------HHHHHHHHHHHHHHHh
Confidence 112 3355556666788999999999843211 1100111 1246889999999999
Q ss_pred hceeEeccCCCCC
Q 005965 373 YDVALSIGDGLRP 385 (667)
Q Consensus 373 YDVtlSLGDGLRP 385 (667)
++|+|-|= +|++
T Consensus 136 ~gv~l~lE-~l~~ 147 (258)
T PRK09989 136 HGKRILVE-ALSP 147 (258)
T ss_pred cCCEEEEE-eCCC
Confidence 99999863 4444
No 49
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=73.71 E-value=18 Score=37.02 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-cee
Q 005965 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY-DVA 376 (667)
Q Consensus 298 t~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~Y-DVt 376 (667)
+.++|.+..+.-.+.|+|++.||++-- ...+ ||.+++ .+| +...+|++-+++. |+.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP-----~~~~-------~g~~~~---------~~~--~~~~eiv~~vr~~~~~P 156 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCP-----NVKG-------GGMAFG---------TDP--EAVAEIVKAVKKATDVP 156 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCC-----CCCC-------Cccccc---------CCH--HHHHHHHHHHHhccCCC
Confidence 568888888877777999999998732 1111 233333 233 4556677777776 777
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEE
Q 005965 377 LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVM 418 (667)
Q Consensus 377 lSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVM 418 (667)
+++- |+|.. . ..-++++++.++|++.+
T Consensus 157 v~vK--l~~~~----------~---~~~~~a~~~~~~G~d~i 183 (296)
T cd04740 157 VIVK--LTPNV----------T---DIVEIARAAEEAGADGL 183 (296)
T ss_pred EEEE--eCCCc----------h---hHHHHHHHHHHcCCCEE
Confidence 7755 55531 1 35677888999999844
No 50
>PRK09061 D-glutamate deacylase; Validated
Probab=73.63 E-value=92 Score=35.10 Aligned_cols=114 Identities=17% Similarity=0.074 Sum_probs=67.7
Q ss_pred CHHH---HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc
Q 005965 298 SWEV---FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD 374 (667)
Q Consensus 298 t~e~---~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YD 374 (667)
|.++ +.+.+++-.++|++.+..-. .+.+ .---.+++++++++++||
T Consensus 164 t~~el~~m~~ll~~al~~Ga~gis~~~----~y~p---------------------------~~~~~eL~~l~~~A~~~g 212 (509)
T PRK09061 164 TPAELAEILELLEQGLDEGALGIGIGA----GYAP---------------------------GTGHKEYLELARLAARAG 212 (509)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEecCC----ccCC---------------------------CCCHHHHHHHHHHHHHcC
Confidence 4455 56667777789999987620 0111 012346889999999999
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC------CchHHHHHHHHHhcCCCCccc
Q 005965 375 VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM------HKIPENMQKQLEWCNEAPFYT 448 (667)
Q Consensus 375 VtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl------~~I~~Nv~lqk~lC~~APfYv 448 (667)
..+.+ =+|-..+.| ...|+..+-++.+.|++.|+.|-|= |+-- .+.-+-++.-++.+
T Consensus 213 ~~v~~--H~e~~~~~~-----~~~e~~av~~~i~lA~~~G~rv~Is---Hlss~g~~~~~~~le~I~~Ar~~G------- 275 (509)
T PRK09061 213 VPTYT--HVRYLSNVD-----PRSSVDAYQELIAAAAETGAHMHIC---HVNSTSLRDIDRCLALVEKAQAQG------- 275 (509)
T ss_pred CEEEE--EecCcccCC-----chhHHHHHHHHHHHHHHhCCCEEEE---eeccCCcccHHHHHHHHHHHHHcC-------
Confidence 88854 111111011 3567888888889999999887763 6544 33333444444421
Q ss_pred cCccccccCCCc
Q 005965 449 LGPLTTDIAPGY 460 (667)
Q Consensus 449 LGPLvTDIApGY 460 (667)
-++++|+.|.|
T Consensus 276 -i~Vt~e~~P~~ 286 (509)
T PRK09061 276 -LDVTTEAYPYG 286 (509)
T ss_pred -CcEEEEecCcc
Confidence 24556666655
No 51
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=73.48 E-value=85 Score=29.99 Aligned_cols=180 Identities=16% Similarity=0.137 Sum_probs=88.1
Q ss_pred CCCChHHHHHHHHHHHHhCCcEe----eecCCCCChH---HHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHH
Q 005965 232 VASSIEEEVYKVQWATMWGADTV----MDLSTGRHIH---ETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRD 304 (667)
Q Consensus 232 ~~~~ieeEveKl~~A~~~GADtV----MDLSTGgdi~---~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d 304 (667)
.+.|++.=.+.++.+.++|||.| ||-..-.++. +.-++|-+..+.|+ . + ++.-.+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v-----~-v---------~lm~~~~~~ 70 (210)
T TIGR01163 6 LSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPI-----D-V---------HLMVENPDR 70 (210)
T ss_pred hcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcE-----E-E---------EeeeCCHHH
Confidence 45566666677888899999995 4433322221 12223333333332 1 1 111111224
Q ss_pred HHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCc-----CchhhhHHHHHHHHhHhceeEec
Q 005965 305 TLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKE-----NFAYEHWDEILDICNQYDVALSI 379 (667)
Q Consensus 305 ~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~E-----NpLYe~FD~ileI~k~YDVtlSL 379 (667)
.++.-++.|+|.+++|.+.+-...... +.+..++.+ +| ++..+++.++...-|..+ +
T Consensus 71 ~~~~~~~~gadgv~vh~~~~~~~~~~~----------------~~~~~~g~~~~~~~~~-~t~~e~~~~~~~~~d~i~-~ 132 (210)
T TIGR01163 71 YIEDFAEAGADIITVHPEASEHIHRLL----------------QLIKDLGAKAGIVLNP-ATPLEFLEYVLPDVDLVL-L 132 (210)
T ss_pred HHHHHHHcCCCEEEEccCCchhHHHHH----------------HHHHHcCCcEEEEECC-CCCHHHHHHHHhhCCEEE-E
Confidence 466777999999999997542221110 111111111 11 233455555554445533 3
Q ss_pred cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCcccc
Q 005965 380 GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTT 454 (667)
Q Consensus 380 GDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvT 454 (667)
++..||-..+..+..-+..+..+-+++... ..++.+++=| | + + .+|+..-.+ .++=.++.|--++
T Consensus 133 -~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~-~~~~~i~v~G-G-I--~--~env~~l~~--~gad~iivgsai~ 197 (210)
T TIGR01163 133 -MSVNPGFGGQKFIPDTLEKIREVRKMIDEN-GLSILIEVDG-G-V--N--DDNARELAE--AGADILVAGSAIF 197 (210)
T ss_pred -EEEcCCCCcccccHHHHHHHHHHHHHHHhc-CCCceEEEEC-C-c--C--HHHHHHHHH--cCCCEEEEChHHh
Confidence 245566655555565555555555554321 2235666666 4 3 3 256654333 4456677665444
No 52
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=72.95 E-value=71 Score=33.03 Aligned_cols=181 Identities=14% Similarity=0.119 Sum_probs=100.3
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCcE----eeecCCCCChH---HHHHHHHhcCCCCcccchhhhHHHHhcC
Q 005965 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIH---ETREWILRNSAVPVGTVPIYQALEKVDG 292 (667)
Q Consensus 220 ~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADt----VMDLSTGgdi~---~~R~~Il~nspvPVGTVPIYqAl~k~~g 292 (667)
++||..+| -|++...+++|++++.. |+|. |||=.--.||. .+=++|-+.+.+|+ ++ +=
T Consensus 2 ~~~I~pSi-l~ad~~~l~~el~~l~~----g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~~t~~~~------Dv----HL 66 (229)
T PRK09722 2 RMKISPSL-MCMDLLKFKEQIEFLNS----KADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKPL------DV----HL 66 (229)
T ss_pred CceEEeeh-hhcCHHHHHHHHHHHHh----CCCEEEEecccCccCCCcccCHHHHHHHHhcCCCCe------EE----EE
Confidence 46677777 57777889999988743 7998 67733322221 12223323333331 11 00
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccc----c--ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHH
Q 005965 293 IAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIP----L--TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEI 366 (667)
Q Consensus 293 ~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~----~--~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~i 366 (667)
-+ -+++. .|++-++.|+|++|||+--+..++. . ..+--.||+ =||- |.++.|
T Consensus 67 Mv--~~P~~---~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGla----------------lnP~-T~~~~l 124 (229)
T PRK09722 67 MV--TDPQD---YIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLV----------------LNPE-TPVESI 124 (229)
T ss_pred Ee--cCHHH---HHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEE----------------eCCC-CCHHHH
Confidence 00 12444 4566677799999999974322222 1 122223332 2674 888999
Q ss_pred HHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcC--CeEEeeCCCCCCCCchHHHHHHHHHhcCCC
Q 005965 367 LDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKD--VQVMNEGPGHIPMHKIPENMQKQLEWCNEA 444 (667)
Q Consensus 367 leI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~g--VQVMIEGPGHVPl~~I~~Nv~lqk~lC~~A 444 (667)
.+++..-|..|=+. .-||--.=.-....+.-+..|-++. .++| +.+.|-| =|- .+|+..-.+ .||
T Consensus 125 ~~~l~~vD~VLvMs--V~PGf~GQ~fi~~~l~KI~~lr~~~---~~~~~~~~IeVDG--GI~----~~~i~~~~~--aGa 191 (229)
T PRK09722 125 KYYIHLLDKITVMT--VDPGFAGQPFIPEMLDKIAELKALR---ERNGLEYLIEVDG--SCN----QKTYEKLME--AGA 191 (229)
T ss_pred HHHHHhcCEEEEEE--EcCCCcchhccHHHHHHHHHHHHHH---HhcCCCeEEEEEC--CCC----HHHHHHHHH--cCC
Confidence 99999999877653 3566554444444444343333333 3455 5566665 333 345543333 468
Q ss_pred CccccC
Q 005965 445 PFYTLG 450 (667)
Q Consensus 445 PfYvLG 450 (667)
=.+|+|
T Consensus 192 d~~V~G 197 (229)
T PRK09722 192 DVFIVG 197 (229)
T ss_pred CEEEEC
Confidence 888888
No 53
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=72.91 E-value=27 Score=34.25 Aligned_cols=159 Identities=18% Similarity=0.242 Sum_probs=96.6
Q ss_pred HHHHHHHHHhCCcEeeecCCCCC-------hHHHHHHHHhcCCCCccc-chhhhHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 005965 240 VYKVQWATMWGADTVMDLSTGRH-------IHETREWILRNSAVPVGT-VPIYQALEKVDGIAENLSWEVFRDTLIEQAE 311 (667)
Q Consensus 240 veKl~~A~~~GADtVMDLSTGgd-------i~~~R~~Il~nspvPVGT-VPIYqAl~k~~g~~~~lt~e~~~d~ieeQAe 311 (667)
-+.+.++.++| -.-+.|+.++. +.++++.+ +...+.+.. .|.+..+....-...+-..+.+.++++--.+
T Consensus 18 ~~~l~~~~~~G-~~gvEi~~~~~~~~~~~~~~~l~~~l-~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 95 (274)
T COG1082 18 EEILRKAAELG-FDGVELSPGDLFPADYKELAELKELL-ADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKE 95 (274)
T ss_pred HHHHHHHHHhC-CCeEecCCcccCCchhhhHHHHHHHH-HHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 35678888999 55567775332 45555544 555566655 6666521111000112346778888888999
Q ss_pred cCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCC
Q 005965 312 QGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDA 391 (667)
Q Consensus 312 qGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA 391 (667)
-|++++++|+|.....-... +.-..- .. .++.+.++++++++++|.|.+..-.=||++...
T Consensus 96 lg~~~vv~~~g~~~~~~~~~--------~~~~~~-~~----------~~~~l~~l~~~a~~~~i~l~~e~~~~~~~~~~~ 156 (274)
T COG1082 96 LGAKVVVVHPGLGAGADDPD--------SPEEAR-ER----------WAEALEELAEIAEELGIGLALENHHHPGNVVET 156 (274)
T ss_pred cCCCeEEeecccCCcCCCCC--------CCcccH-HH----------HHHHHHHHHHHHHHhCCceEEeecCCccceeec
Confidence 99999999998644332211 111100 22 367899999999999999999985556665444
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCC
Q 005965 392 NDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMH 428 (667)
Q Consensus 392 ~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~ 428 (667)
. +|..+ +.+.....+|.+++- +||.-+.
T Consensus 157 ~--~~~~~------~~~~~~~~~v~~~lD-~~H~~~~ 184 (274)
T COG1082 157 G--ADALD------LLREVDSPNVGLLLD-TGHAFFA 184 (274)
T ss_pred C--HHHHH------HHHhcCCCceEEEEe-cCchhhc
Confidence 3 22222 223334446776664 8898776
No 54
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=72.87 E-value=47 Score=34.37 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhcee
Q 005965 297 LSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVA 376 (667)
Q Consensus 297 lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVt 376 (667)
+|.++..+.+.+-.+.|+||+.+|.|........ .+. ... +-....+.+-.|.+..++.
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~--------~~~------------~~~-~~~~~~~~~~~ir~~~~iP 283 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPI--------IPP------------PYV-PEGYFLELAEKIKKAVKIP 283 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccc--------cCC------------CCC-CcchhHHHHHHHHHHCCCC
Confidence 6788999999988999999999999853211110 000 011 1123445666677778888
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHH
Q 005965 377 LSIGDGLRPGSIYDANDTAQFAELLTQ 403 (667)
Q Consensus 377 lSLGDGLRPG~iaDA~D~AQ~~EL~~L 403 (667)
+..+-|++ +..++.+++..
T Consensus 284 Vi~~Ggi~--------t~~~a~~~l~~ 302 (327)
T cd02803 284 VIAVGGIR--------DPEVAEEILAE 302 (327)
T ss_pred EEEeCCCC--------CHHHHHHHHHC
Confidence 88776665 34555555543
No 55
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=70.98 E-value=98 Score=29.45 Aligned_cols=78 Identities=18% Similarity=0.170 Sum_probs=43.1
Q ss_pred CCCChHHHHHHHHHHHHhCCcEe----eecCCCCCh---HHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHH
Q 005965 232 VASSIEEEVYKVQWATMWGADTV----MDLSTGRHI---HETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRD 304 (667)
Q Consensus 232 ~~~~ieeEveKl~~A~~~GADtV----MDLSTGgdi---~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d 304 (667)
...|+..=.+.++.+.+.|+|.| ||.++-.+. .++-++|.+.++.|++ |++ .-.+..+
T Consensus 7 ~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-v~l--------------~~~d~~~ 71 (211)
T cd00429 7 LSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLD-VHL--------------MVENPER 71 (211)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEE-EEe--------------eeCCHHH
Confidence 34455566677889999999987 343332222 1223333333223321 111 1111123
Q ss_pred HHHHHHhcCCCEEEEecccc
Q 005965 305 TLIEQAEQGVDYFTIHAGVL 324 (667)
Q Consensus 305 ~ieeQAeqGVDfmTIHaGv~ 324 (667)
.++.-++.|+|.++||.+.+
T Consensus 72 ~~~~~~~~g~dgv~vh~~~~ 91 (211)
T cd00429 72 YIEAFAKAGADIITFHAEAT 91 (211)
T ss_pred HHHHHHHcCCCEEEECccch
Confidence 45566689999999999865
No 56
>PRK13404 dihydropyrimidinase; Provisional
Probab=70.76 E-value=49 Score=36.76 Aligned_cols=126 Identities=16% Similarity=0.167 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeE
Q 005965 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVAL 377 (667)
Q Consensus 298 t~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtl 377 (667)
+.+.+++.+.++++.||+.|-+-.+ .+| + .+-...+.++++.+++|++.+
T Consensus 133 ~~~~~~~~v~~l~~~G~~~iKi~~~------------------~~~-----~-------~~~~~~l~~~~~~a~~~g~~V 182 (477)
T PRK13404 133 TEEVLTEELPALIAQGYTSFKVFMT------------------YDD-----L-------KLDDRQILDVLAVARRHGAMV 182 (477)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEec------------------CCC-----C-------CCCHHHHHHHHHHHHhcCCEE
Confidence 3466667789999999998887632 011 0 111235666777777777655
Q ss_pred ec--cC----------CCCCCCccC---CCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcC
Q 005965 378 SI--GD----------GLRPGSIYD---ANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCN 442 (667)
Q Consensus 378 SL--GD----------GLRPG~iaD---A~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~ 442 (667)
.. -| .++.|.+.- ..-+..++|...+.+....|++.|+.+-| -||-.-+=-+-++..|+ .
T Consensus 183 ~~Hae~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~g~~~hi---~Hvs~~~~~~~i~~~k~--~ 257 (477)
T PRK13404 183 MVHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPILI---VHVSGREAAEQIRRARG--R 257 (477)
T ss_pred EEEeCCHHHHHHHHHHHHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHhCCCEEE---EECCCHHHHHHHHHHHH--C
Confidence 32 11 122332211 11235677888888888888888888855 25553221122222222 1
Q ss_pred CCCccccCccccccCCCchhHH
Q 005965 443 EAPFYTLGPLTTDIAPGYDHIT 464 (667)
Q Consensus 443 ~APfYvLGPLvTDIApGYDHIt 464 (667)
+. +++.++.|+|=..+
T Consensus 258 g~------~vt~e~~ph~L~l~ 273 (477)
T PRK13404 258 GL------KIFAETCPQYLFLT 273 (477)
T ss_pred CC------eEEEEEChhhhccC
Confidence 22 24456777765444
No 57
>TIGR03006 pepcterm_polyde polysaccharide deactylase family protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide deacetylases (pfam01522). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. The highest scoring homologs below the trusted cutoff for this model are found in several species of Methanosarcina, an archaeal genus.
Probab=70.72 E-value=15 Score=38.15 Aligned_cols=115 Identities=18% Similarity=0.226 Sum_probs=74.7
Q ss_pred CCcCchhhhHHHHHHHHhHhce--eEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCC---
Q 005965 354 HKENFAYEHWDEILDICNQYDV--ALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMH--- 428 (667)
Q Consensus 354 ~~ENpLYe~FD~ileI~k~YDV--tlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~--- 428 (667)
..++=.-.+.++||+++++|+| |+-+ .|.+++.+ -+++++..+.|-++..=|=.|..++
T Consensus 21 ~~~~rv~~nt~riL~lL~~~gikATFFv-----~g~~~e~~-----------p~lir~i~~~GhEIgsHg~sH~~l~~ls 84 (265)
T TIGR03006 21 SLPCRVERNTDRILDLLDRHGVKATFFT-----LGWVAERY-----------PELVRRIVAAGHELASHGYGHERVTTQT 84 (265)
T ss_pred CccchHHHhHHHHHHHHHHcCCcEEEEE-----eccchhhC-----------HHHHHHHHHcCCEeeeccccCcCchhCC
Confidence 3344455689999999999998 5554 24444322 3678999999999999999999886
Q ss_pred ------chHHHHHHHHHhcCCCCccccCccccccCCCc--hhHHH-hHHHHHhhhcccceeeecCcccc--cCCCC
Q 005965 429 ------KIPENMQKQLEWCNEAPFYTLGPLTTDIAPGY--DHITS-AIGAANIGALGTALLCYVTPKEH--LGLPN 493 (667)
Q Consensus 429 ------~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGY--DHIts-AIGaA~aa~~GadfLCYVTPaEH--LgLP~ 493 (667)
+|+...+.-+++++..|-+...| +| ++-+. |+ .+...+|-.+-|-+-|.-| .|.|+
T Consensus 85 ~ee~~~eI~~s~~~Le~itG~~~~gfRaP-------~~s~~~~t~~a~--~iL~e~Gy~YdsS~~p~~~d~~g~~~ 151 (265)
T TIGR03006 85 PEAFRADIRRSKALLEDLSGQPVRGYRAP-------SFSIGKKNLWAL--DVLAEAGYRYSSSIYPVRHDHYGMPD 151 (265)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEECC-------CCCCCCCcHHHH--HHHHHCCCEEEEeeccCcCCcCCCCC
Confidence 45566666666776665443333 32 22221 12 3455688888888876633 44443
No 58
>TIGR02318 phosphono_phnM phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs.
Probab=70.59 E-value=13 Score=39.96 Aligned_cols=86 Identities=17% Similarity=0.194 Sum_probs=57.1
Q ss_pred hhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHH----------HHHHHHHhcCCeEEeeCCCCCCCC
Q 005965 359 AYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQG----------ELTRRAWDKDVQVMNEGPGHIPMH 428 (667)
Q Consensus 359 LYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LG----------EL~krA~e~gVQVMIEGPGHVPl~ 428 (667)
+.+.+.+++++|+++++.+ ..+|+.....+.+....| |.++.+.++|+.|+.=-|. |+.
T Consensus 207 ~~e~i~~~v~~A~~~G~~v---------~sH~~~~~e~i~~a~~~Gv~~~E~~~t~e~a~~~~~~G~~v~~~~p~--~~r 275 (376)
T TIGR02318 207 GLANRSEIAALARARGIPL---------ASHDDDTPEHVAEAHDLGVTISEFPTTLEAAKEARSLGMQILMGAPN--IVR 275 (376)
T ss_pred cHHHHHHHHHHHHHCCCeE---------EEecCCCHHHHHHHHHCCCChhccCCCHHHHHHHHHcCCeEEECCcc--ccc
Confidence 3799999999999999877 566655555666666654 4788889999997643231 111
Q ss_pred chH--HHHHHHHHhcCCCCccccCccccccCCC
Q 005965 429 KIP--ENMQKQLEWCNEAPFYTLGPLTTDIAPG 459 (667)
Q Consensus 429 ~I~--~Nv~lqk~lC~~APfYvLGPLvTDIApG 459 (667)
.-. .|..+.+-+-.|.+. -|.||-.|+
T Consensus 276 ~~~~~~~~~l~~~~~~G~~~----~l~SD~~p~ 304 (376)
T TIGR02318 276 GGSHSGNLSARELAHEGLLD----VLASDYVPA 304 (376)
T ss_pred cccccchHHHHHHHHCCCcE----EEEcCCCcH
Confidence 111 144455555566643 677888774
No 59
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=70.38 E-value=7.1 Score=39.37 Aligned_cols=91 Identities=19% Similarity=0.119 Sum_probs=52.4
Q ss_pred CCceeEeeccccCCCCCChHHHHHHHHHHHHhCCcE----eeecCCCCChH---HHHHHHHhcCCCCcccchhhhHHHHh
Q 005965 218 NFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIH---ETREWILRNSAVPVGTVPIYQALEKV 290 (667)
Q Consensus 218 gl~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADt----VMDLSTGgdi~---~~R~~Il~nspvPVGTVPIYqAl~k~ 290 (667)
.+.++|..+| -+.+...+++|++++. ++|+|. |||-.--.|+. ++=++|-+.+| .+|+ +
T Consensus 4 ~~~~~i~pSi-~~~d~~~l~~~~~~l~---~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~----~~~l-D----- 69 (228)
T PTZ00170 4 PLKAIIAPSI-LAADFSKLADEAQDVL---SGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLP----NTFL-D----- 69 (228)
T ss_pred CCCCEEehhH-hhcCHHHHHHHHHHHH---HcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCC----CCCE-E-----
Confidence 4567777777 4566667888887764 678988 67743333321 12233333331 2222 1
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCEEEEecccccc
Q 005965 291 DGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLR 326 (667)
Q Consensus 291 ~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~ 326 (667)
+ +|=.+.-...++.-++.|+|++|||+--+..
T Consensus 70 ---v-HLm~~~p~~~i~~~~~~Gad~itvH~ea~~~ 101 (228)
T PTZ00170 70 ---C-HLMVSNPEKWVDDFAKAGASQFTFHIEATED 101 (228)
T ss_pred ---E-EECCCCHHHHHHHHHHcCCCEEEEeccCCch
Confidence 1 1112334456677778899999999875443
No 60
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=70.19 E-value=9.3 Score=38.43 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCcEe-------------eecCCCCChHHHHHHHHhcCCCCcccchhhh----HHHHhcCCCCCCCHHHHH
Q 005965 241 YKVQWATMWGADTV-------------MDLSTGRHIHETREWILRNSAVPVGTVPIYQ----ALEKVDGIAENLSWEVFR 303 (667)
Q Consensus 241 eKl~~A~~~GADtV-------------MDLSTGgdi~~~R~~Il~nspvPVGTVPIYq----Al~k~~g~~~~lt~e~~~ 303 (667)
+.++.+-++|-|.| +|+| ..++.++|+.+ +...+.|..+-... .+........+-..+.+.
T Consensus 20 e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~-~~~~~~~~~~l-~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~ 97 (279)
T TIGR00542 20 ERLQLAKTCGFDFVEMSVDETDDRLSRLDWS-REQRLALVNAI-IETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIME 97 (279)
T ss_pred HHHHHHHHcCCCEEEEecCCccchhhccCCC-HHHHHHHHHHH-HHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHH
Confidence 34567779999998 3332 23455666554 56666665332210 010000001111235577
Q ss_pred HHHHHHHhcCCCEEEEec
Q 005965 304 DTLIEQAEQGVDYFTIHA 321 (667)
Q Consensus 304 d~ieeQAeqGVDfmTIHa 321 (667)
+.|+--.+-|+.+++++.
T Consensus 98 ~~i~~a~~lG~~~v~~~~ 115 (279)
T TIGR00542 98 KAIQLARDLGIRTIQLAG 115 (279)
T ss_pred HHHHHHHHhCCCEEEecC
Confidence 778888889999998864
No 61
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=69.84 E-value=30 Score=37.58 Aligned_cols=119 Identities=23% Similarity=0.269 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHH-hCCcEeeecCCC-CChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHH----
Q 005965 237 EEEVYKVQWATM-WGADTVMDLSTG-RHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQA---- 310 (667)
Q Consensus 237 eeEveKl~~A~~-~GADtVMDLSTG-gdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQA---- 310 (667)
-.-++|+..|++ .|+-.++-|.-+ |-... .... ..+.|++--|+-.... .+..+..||.+++-++|+.-+
T Consensus 82 i~~~k~l~davh~~G~~i~~QL~H~~Gr~~~--~~~~-~~~~~~~ps~~~~~~~-~~~~p~~mt~~eI~~ii~~f~~AA~ 157 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQLTAGFGRVCI--PGFL-GEDKPVAPSPIPNRWL-PEITCRELTTEEVETFVGKFGESAV 157 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEccCcCCCccC--cccc-CCCCccCCCCCCCCcC-CCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 356777776665 899999999864 42211 0000 0112222222111000 013568899999998888765
Q ss_pred ---hcCCCEEEEec---c-ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHH
Q 005965 311 ---EQGVDYFTIHA---G-VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILD 368 (667)
Q Consensus 311 ---eqGVDfmTIHa---G-v~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ile 368 (667)
+.|.|.+=||+ | +.-+.|.-..++.|. .-|||+.- +-.|+.+-.+.|-+
T Consensus 158 ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtD--eyGGslen-------R~rf~~eii~~vr~ 213 (382)
T cd02931 158 IAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTD--KYGGSLEN-------RLRFAIEIVEEIKA 213 (382)
T ss_pred HHHHcCCCEEEEeccccChHHHHhcCCccCCCCC--cCCCCHHH-------HhHHHHHHHHHHHH
Confidence 67999999998 5 445555544555555 36898753 34455555555444
No 62
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=69.77 E-value=29 Score=34.33 Aligned_cols=75 Identities=20% Similarity=0.201 Sum_probs=54.3
Q ss_pred HHHHHH-HHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005965 237 EEEVYK-VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVD 315 (667)
Q Consensus 237 eeEveK-l~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVD 315 (667)
.++++. ++.|.+.|||-|-= +-.++++.+++. .+.+++|| +-+ |.+.--|.+++++.+.+-.+.|++
T Consensus 142 ~~~i~~~~~~a~~~GaD~Ik~-~~~~~~~~~~~i-~~~~~~pv-----v~~-----GG~~~~~~~~~l~~~~~~~~~Ga~ 209 (235)
T cd00958 142 PDLIAYAARIGAELGADIVKT-KYTGDAESFKEV-VEGCPVPV-----VIA-----GGPKKDSEEEFLKMVYDAMEAGAA 209 (235)
T ss_pred HHHHHHHHHHHHHHCCCEEEe-cCCCCHHHHHHH-HhcCCCCE-----EEe-----CCCCCCCHHHHHHHHHHHHHcCCc
Confidence 378888 89999999998874 444478888665 46777653 211 333445899999999999999999
Q ss_pred EEEEeccc
Q 005965 316 YFTIHAGV 323 (667)
Q Consensus 316 fmTIHaGv 323 (667)
-+.+=..+
T Consensus 210 gv~vg~~i 217 (235)
T cd00958 210 GVAVGRNI 217 (235)
T ss_pred EEEechhh
Confidence 77654443
No 63
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=69.29 E-value=40 Score=35.68 Aligned_cols=117 Identities=25% Similarity=0.373 Sum_probs=62.2
Q ss_pred HHHHHHHHhHhcee-EeccCCCCCCCccCCCcHHHHHHHHHHH----------HHHHHHHhcCCeEEe-eC---CCCCCC
Q 005965 363 WDEILDICNQYDVA-LSIGDGLRPGSIYDANDTAQFAELLTQG----------ELTRRAWDKDVQVMN-EG---PGHIPM 427 (667)
Q Consensus 363 FD~ileI~k~YDVt-lSLGDGLRPG~iaDA~D~AQ~~EL~~LG----------EL~krA~e~gVQVMI-EG---PGHVPl 427 (667)
|++.++++.++.|. ++++-| .| ...+++|...| +++++|.++|+...+ +| -||..-
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g-~p--------~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~ 146 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAG-NP--------GKYIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGE 146 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCC-Cc--------HHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCC
Confidence 45677776666665 444322 22 13555555443 677999999998776 45 599752
Q ss_pred CchHHHHHHHHHhcC--CCCccccCccccccCCCchhHHHhH-HHHHhhhcccceeeecCcccccCCCChhHHHHHHH
Q 005965 428 HKIPENMQKQLEWCN--EAPFYTLGPLTTDIAPGYDHITSAI-GAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVI 502 (667)
Q Consensus 428 ~~I~~Nv~lqk~lC~--~APfYvLGPLvTDIApGYDHItsAI-GaA~aa~~GadfLCYVTPaEHLgLP~~eDVreGVI 502 (667)
. .++.+-++++. +-|+..-|=+. -+ .++.+|+ -||-+.+.|+.|||.. |- +..+..|+=++
T Consensus 147 ~---~~~~ll~~v~~~~~iPviaaGGI~----~~-~~~~~al~~GA~gV~iGt~f~~t~---Es---~~~~~~k~~l~ 210 (307)
T TIGR03151 147 L---TTMALVPQVVDAVSIPVIAAGGIA----DG-RGMAAAFALGAEAVQMGTRFLCAK---EC---NVHPNYKEKVL 210 (307)
T ss_pred C---cHHHHHHHHHHHhCCCEEEECCCC----CH-HHHHHHHHcCCCEeecchHHhccc---cc---CCCHHHHHHHH
Confidence 1 24444445543 25666555433 22 2343332 2344445555555542 22 44455566554
No 64
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=68.94 E-value=41 Score=36.33 Aligned_cols=135 Identities=20% Similarity=0.193 Sum_probs=69.4
Q ss_pred EeeccccCCCCCChHHHHHHHHHHHHhCCcEe-eecCC-------CC--ChH---HHHHHHHhcCCCCcccchhhhHHHH
Q 005965 223 VNANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLST-------GR--HIH---ETREWILRNSAVPVGTVPIYQALEK 289 (667)
Q Consensus 223 VNANIGtS~~~~~ieeEveKl~~A~~~GADtV-MDLST-------Gg--di~---~~R~~Il~nspvPVGTVPIYqAl~k 289 (667)
+.+|||-......-.+++.++...+ +||.+ ..|.. ++ |.+ +.=++|.+..++||. + |
T Consensus 123 ~~aNl~~~~~~~~~~~~~~~~~~~~--~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVi-------v-K 192 (352)
T PRK05437 123 LFANLGAVQLYGYGVEEAQRAVEMI--EADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVI-------V-K 192 (352)
T ss_pred EEeecCccccCCCCHHHHHHHHHhc--CCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEE-------E-E
Confidence 3457776655322234444443333 56655 24422 22 444 555677777778876 1 2
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCCCEEEEecc--ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHH
Q 005965 290 VDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAG--VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEIL 367 (667)
Q Consensus 290 ~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaG--v~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~il 367 (667)
..| ..++. +....-.+.|||+++|+.. .+...++. .|-... .-. ....+.-+.-++.|.
T Consensus 193 ~~g--~g~s~----~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~--~R~~~~--~~~---------~~~~~~g~pt~~~l~ 253 (352)
T PRK05437 193 EVG--FGISK----ETAKRLADAGVKAIDVAGAGGTSWAAIEN--YRARDD--RLA---------SYFADWGIPTAQSLL 253 (352)
T ss_pred eCC--CCCcH----HHHHHHHHcCCCEEEECCCCCCCccchhh--hhhhcc--ccc---------cccccccCCHHHHHH
Confidence 112 23553 4444445679999999763 22222221 111100 000 112233344677888
Q ss_pred HHHhHh-ceeEeccCCCCCC
Q 005965 368 DICNQY-DVALSIGDGLRPG 386 (667)
Q Consensus 368 eI~k~Y-DVtlSLGDGLRPG 386 (667)
++.+.. ++.+-.-=|+|-|
T Consensus 254 ~i~~~~~~ipvia~GGI~~~ 273 (352)
T PRK05437 254 EARSLLPDLPIIASGGIRNG 273 (352)
T ss_pred HHHHhcCCCeEEEECCCCCH
Confidence 888874 8888776677765
No 65
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=68.85 E-value=59 Score=33.18 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=72.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY- 373 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~Y- 373 (667)
.+++++.+.+.|+...+.|||-+.+- |-+-+...++ .+++.++++++.+.
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~-GstGE~~~lt----------------------------~~Er~~l~~~~~~~~ 66 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVC-GTTGESPTLS----------------------------DEEHEAVIEAVVEAV 66 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEEC-CCCcchhhCC----------------------------HHHHHHHHHHHHHHh
Confidence 47999999999999999999998765 5554443332 34556667766665
Q ss_pred --ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe-EEeeCCCCCCCCchHHHHHHHHHhcC--CCCcc
Q 005965 374 --DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ-VMNEGPGHIPMHKIPENMQKQLEWCN--EAPFY 447 (667)
Q Consensus 374 --DVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQ-VMIEGPGHVPl~~I~~Nv~lqk~lC~--~APfY 447 (667)
++.+-. |...-+++ ..-+|++.|.+.|+. ||+--|...+..+ ++-++.-+++|. +-|++
T Consensus 67 ~~~~~vi~------gv~~~~~~--------~~~~~a~~a~~~G~d~v~~~~P~~~~~~~-~~l~~~~~~ia~~~~~pi~ 130 (284)
T cd00950 67 NGRVPVIA------GTGSNNTA--------EAIELTKRAEKAGADAALVVTPYYNKPSQ-EGLYAHFKAIAEATDLPVI 130 (284)
T ss_pred CCCCcEEe------ccCCccHH--------HHHHHHHHHHHcCCCEEEEcccccCCCCH-HHHHHHHHHHHhcCCCCEE
Confidence 233322 22222222 235788889999998 8888787777765 566666666666 34554
No 66
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=67.15 E-value=48 Score=31.65 Aligned_cols=21 Identities=10% Similarity=0.077 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEE
Q 005965 299 WEVFRDTLIEQAEQGVDYFTI 319 (667)
Q Consensus 299 ~e~~~d~ieeQAeqGVDfmTI 319 (667)
.+.+++.|++-++.||+++-+
T Consensus 12 ~~~~~~~~~~~~~~g~~~v~l 32 (196)
T TIGR00693 12 PADLLNRVEAALKGGVTLVQL 32 (196)
T ss_pred cccHHHHHHHHHhcCCCEEEE
Confidence 356888999999999998844
No 67
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=65.44 E-value=51 Score=33.25 Aligned_cols=80 Identities=13% Similarity=0.040 Sum_probs=52.4
Q ss_pred hhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHH-HHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHH
Q 005965 359 AYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELL-TQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQ 437 (667)
Q Consensus 359 LYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~-~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lq 437 (667)
.-++|.+.+++|++.++..=.=-|-+.. .+..+..++..+. .|.+|++.|.++||.+.+|.-+.-.++.+.+..++.
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~~~~~--~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~~t~~~~~~li 169 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQLAGYDVY--YEEHDEETRRRFREGLKEAVELAARAQVTLAVEIMDTPFMSSISKWLKWD 169 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEEecCcccc--cCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCCchhcCHHHHHHHH
Confidence 3567899999999998653221121111 2233455555554 678999999999999999963323466676666666
Q ss_pred HHh
Q 005965 438 LEW 440 (667)
Q Consensus 438 k~l 440 (667)
+.+
T Consensus 170 ~~v 172 (279)
T TIGR00542 170 HYL 172 (279)
T ss_pred HHc
Confidence 655
No 68
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=65.34 E-value=87 Score=34.44 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=46.0
Q ss_pred HHHHHHhCCcEeeecC----CCCChHHHHHHHHhcCC------------CCcccchhhhHHHHhc--CCC--CCCCHHHH
Q 005965 243 VQWATMWGADTVMDLS----TGRHIHETREWILRNSA------------VPVGTVPIYQALEKVD--GIA--ENLSWEVF 302 (667)
Q Consensus 243 l~~A~~~GADtVMDLS----TGgdi~~~R~~Il~nsp------------vPVGTVPIYqAl~k~~--g~~--~~lt~e~~ 302 (667)
+.+.-++|+-.++-.. ...+.+.++++|.+.-+ .|+..==+|+.+..+. +.. ..++..+.
T Consensus 64 a~avs~~GglGvl~~~gl~~~~~~~e~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~~V~v~vr~~~~~~ 143 (368)
T PRK08649 64 AIELGKLGGLGVLNLEGLWTRYEDPEPILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDAGVIVAVSLSPQRA 143 (368)
T ss_pred HHHHHhCCCceEEeeccccccCCCHHHHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCeEEEEEecCCcCH
Confidence 4566789998888721 23578888888865433 2222100133333221 211 22344455
Q ss_pred HHHHHHHHhcCCCEEEEecc
Q 005965 303 RDTLIEQAEQGVDYFTIHAG 322 (667)
Q Consensus 303 ~d~ieeQAeqGVDfmTIHaG 322 (667)
.+.++.-.+.|||++++|..
T Consensus 144 ~e~a~~l~eaGvd~I~vhgr 163 (368)
T PRK08649 144 QELAPTVVEAGVDLFVIQGT 163 (368)
T ss_pred HHHHHHHHHCCCCEEEEecc
Confidence 66666667889999999985
No 69
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=65.33 E-value=1.3e+02 Score=31.48 Aligned_cols=154 Identities=20% Similarity=0.208 Sum_probs=80.3
Q ss_pred CCceeEeeccccCCCCCChHHHHHHHHHHHHhCCcEeeecCCCC-C-----hHHHHHHHH--hcCCCCcc-cchhhhHHH
Q 005965 218 NFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGR-H-----IHETREWIL--RNSAVPVG-TVPIYQALE 288 (667)
Q Consensus 218 gl~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADtVMDLSTGg-d-----i~~~R~~Il--~nspvPVG-TVPIYqAl~ 288 (667)
.-++.+.+++|.... ++++-++.++.+.+.|.++|= +-.|. + +...++.|- |.. +| .++|. .
T Consensus 124 ~~~v~~~~~~~~~~~--~~~~~~~~a~~~~~~Gf~~~K-ik~g~~~~~~~~~~~d~~~v~~ir~~---~g~~~~l~---v 194 (357)
T cd03316 124 RDRVRVYASGGGYDD--SPEELAEEAKRAVAEGFTAVK-LKVGGPDSGGEDLREDLARVRAVREA---VGPDVDLM---V 194 (357)
T ss_pred CCceeeEEecCCCCC--CHHHHHHHHHHHHHcCCCEEE-EcCCCCCcchHHHHHHHHHHHHHHHh---hCCCCEEE---E
Confidence 345667776653221 566667778888899999872 33333 2 222222211 110 11 11110 0
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchh-hhHHHHH
Q 005965 289 KVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY-EHWDEIL 367 (667)
Q Consensus 289 k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLY-e~FD~il 367 (667)
.+++ .+|.++.++.+..-.+.|++|+= -|+. ..++.+-
T Consensus 195 DaN~---~~~~~~a~~~~~~l~~~~i~~iE--------------------------------------qP~~~~~~~~~~ 233 (357)
T cd03316 195 DANG---RWDLAEAIRLARALEEYDLFWFE--------------------------------------EPVPPDDLEGLA 233 (357)
T ss_pred ECCC---CCCHHHHHHHHHHhCccCCCeEc--------------------------------------CCCCccCHHHHH
Confidence 1222 35667777666555555776631 1332 2566666
Q ss_pred HHHhHhceeEeccCCCCCCCccC--------CCcHHHH-----HHHHHHHHHHHHHHhcCCeEEeeCCC
Q 005965 368 DICNQYDVALSIGDGLRPGSIYD--------ANDTAQF-----AELLTQGELTRRAWDKDVQVMNEGPG 423 (667)
Q Consensus 368 eI~k~YDVtlSLGDGLRPG~iaD--------A~D~AQ~-----~EL~~LGEL~krA~e~gVQVMIEGPG 423 (667)
++.++.++-+.+|..++- ..| +-|-.|+ .-+...-++++.|.++|++||+-+-+
T Consensus 234 ~l~~~~~ipi~~dE~~~~--~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~~ 300 (357)
T cd03316 234 RLRQATSVPIAAGENLYT--RWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGAG 300 (357)
T ss_pred HHHHhCCCCEEecccccc--HHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCCC
Confidence 777777777777766531 000 1111111 11233346778899999999986543
No 70
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=64.74 E-value=22 Score=37.85 Aligned_cols=135 Identities=18% Similarity=0.218 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 005965 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (667)
Q Consensus 300 e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSL 379 (667)
+++-.++++-++.|+|.+..|-|+.+..-+....++-=||-..++ +|=.+..||. .+..+.
T Consensus 43 ~d~e~~v~~v~~~g~dav~~~~G~~~~~~~~y~~dvplivkl~~~-----------t~l~~~~~~~--------~~~~~v 103 (265)
T COG1830 43 EDPENIVAKVAEAGADAVAMTPGIARSVHRGYAHDVPLIVKLNGS-----------TSLSPDPNDQ--------VLVATV 103 (265)
T ss_pred cCHHHHHHHHHhcCCCEEEecHhHHhhcCccccCCcCEEEEeccc-----------cccCCCcccc--------eeeeeH
Confidence 456678889999999999999999988888777788778877776 3333333332 234444
Q ss_pred cCCCCCCCccCC-----CcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCcccc
Q 005965 380 GDGLRPGSIYDA-----NDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTT 454 (667)
Q Consensus 380 GDGLRPG~iaDA-----~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvT 454 (667)
=|..|-|..+=+ .-+-.-+.|..++++.++|.++|.-+|++ -|.-||-+.
T Consensus 104 e~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~-------------------------~YpRg~~~~ 158 (265)
T COG1830 104 EDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAW-------------------------AYPRGPAIK 158 (265)
T ss_pred HHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEE-------------------------EeccCCccc
Confidence 555554432211 00111456778899999999999999985 266677665
Q ss_pred ccCCCchhHHHhHHH--HHhhhcccceee
Q 005965 455 DIAPGYDHITSAIGA--ANIGALGTALLC 481 (667)
Q Consensus 455 DIApGYDHItsAIGa--A~aa~~GadfLC 481 (667)
|= |++..-.+|= =+++-.|||++=
T Consensus 159 ~~---~~~d~~~v~~aaRlaaelGADIiK 184 (265)
T COG1830 159 DE---YHRDADLVGYAARLAAELGADIIK 184 (265)
T ss_pred cc---ccccHHHHHHHHHHHHHhcCCeEe
Confidence 54 8888888773 367778888873
No 71
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=64.46 E-value=2e+02 Score=30.69 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHHHHhCCcEeeecC
Q 005965 234 SSIEEEVYKVQWATMWGADTVMDLS 258 (667)
Q Consensus 234 ~~ieeEveKl~~A~~~GADtVMDLS 258 (667)
.+++.=++++..-++.|||- .|+-
T Consensus 35 ~~~~~a~~~a~~~~~~GAdI-IDIG 58 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATI-IDVG 58 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcE-EEEC
Confidence 47899999999999999985 4874
No 72
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.44 E-value=7.9 Score=39.49 Aligned_cols=143 Identities=17% Similarity=0.130 Sum_probs=82.9
Q ss_pred HHHHHHHHhCCcEeeecCCCCC-----------hHHHHHHHHhcCCCC---cccchhhh-HHHHhcCCCCCCCHHHHHHH
Q 005965 241 YKVQWATMWGADTVMDLSTGRH-----------IHETREWILRNSAVP---VGTVPIYQ-ALEKVDGIAENLSWEVFRDT 305 (667)
Q Consensus 241 eKl~~A~~~GADtVMDLSTGgd-----------i~~~R~~Il~nspvP---VGTVPIYq-Al~k~~g~~~~lt~e~~~d~ 305 (667)
+-+..|.+.|+|+|+=.+.... +.++|+..-++ .+. +..-..|- -+.-.+..+.+.+.+.|.+.
T Consensus 15 ~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~~ 93 (274)
T TIGR00587 15 AAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETN-KNLSQIVLVHAPYLINLASPDEEKEEKSLDVLDEE 93 (274)
T ss_pred HHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHc-CCCCcceeccCCeeeecCCCCHHHHHHHHHHHHHH
Confidence 3567889999999985444433 44555554444 233 33323342 11111122334566889999
Q ss_pred HHHHHhcCCCEEEEeccccccc-----cccccCcccCccccccHHHHHHHHHc--CCcCchhhhHHHHHHHHhHh-----
Q 005965 306 LIEQAEQGVDYFTIHAGVLLRY-----IPLTAKRMTGIVSRGGSIHAKWCLAY--HKENFAYEHWDEILDICNQY----- 373 (667)
Q Consensus 306 ieeQAeqGVDfmTIHaGv~~~~-----l~~~~~RvtgIVSRGGSi~a~Wml~h--~~ENpLYe~FD~ileI~k~Y----- 373 (667)
|+.-.+-|.+++++|.|-.... +.+...-+.-++..... ..-++.| ..+|.+...++++.+++++.
T Consensus 94 i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~--v~l~lEN~~~~~~~l~~~~~el~~ll~~~~~~~~ 171 (274)
T TIGR00587 94 LKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKI--VTILLENMAGQGSELGRSFEELAYIIKVIVDKRR 171 (274)
T ss_pred HHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCC--CEEEEEeCCCCCCccCCCHHHHHHHHHhcCCCCc
Confidence 9999999999999999975321 11111111111221111 2233443 45678888999999999765
Q ss_pred -ceeEeccCCCCCC
Q 005965 374 -DVALSIGDGLRPG 386 (667)
Q Consensus 374 -DVtlSLGDGLRPG 386 (667)
.++|=.|-..-.|
T Consensus 172 lg~~lDt~H~~~~g 185 (274)
T TIGR00587 172 IGVCLDTCHFFAAG 185 (274)
T ss_pred eEEEEEhhhHHhcC
Confidence 3677777766666
No 73
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=64.37 E-value=28 Score=35.78 Aligned_cols=161 Identities=19% Similarity=0.190 Sum_probs=96.0
Q ss_pred cccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccc--cC----cccCccccc--cH---H-
Q 005965 278 VGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLT--AK----RMTGIVSRG--GS---I- 345 (667)
Q Consensus 278 VGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~--~~----RvtgIVSRG--GS---i- 345 (667)
.-.||+-+.+.+ |. .-+.+++...+++-.+-|+|-+.+|.|......+.. .. |+.+.++-| |. +
T Consensus 21 ~~~~a~Dh~~l~--gp--~~~~~d~~~~~~~a~~~~~~av~v~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~ 96 (267)
T PRK07226 21 TVIVPMDHGVSH--GP--IDGLVDIRDTVNKVAEGGADAVLMHKGLARHGHRGYGRDVGLIVHLSASTSLSPDPNDKVLV 96 (267)
T ss_pred EEEEECCCcccc--CC--CcCcCCHHHHHHHHHhcCCCEEEeCHhHHhhhccccCCCCcEEEEEcCCCCCCCCCCcceee
Confidence 446788887653 22 348889999888888889999999999866644322 22 444333332 22 0
Q ss_pred -HHHHHHHcC-------------CcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHH
Q 005965 346 -HAKWCLAYH-------------KENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAW 411 (667)
Q Consensus 346 -~a~Wml~h~-------------~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~ 411 (667)
-+...+..+ +++..++...+|+++|++|++.|=+=+.-+...+.+..|. ..+.++++.|-
T Consensus 97 ~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~------~~i~~a~~~a~ 170 (267)
T PRK07226 97 GTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDP------EVVAHAARVAA 170 (267)
T ss_pred ecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccH------HHHHHHHHHHH
Confidence 022233322 2566788888999999999987654222221222222232 23567788888
Q ss_pred hcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCcccc
Q 005965 412 DKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTT 454 (667)
Q Consensus 412 e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvT 454 (667)
+.|+-..=-+.. - . .+.++...+.|. .|.+..|=+-+
T Consensus 171 e~GAD~vKt~~~---~-~-~~~l~~~~~~~~-ipV~a~GGi~~ 207 (267)
T PRK07226 171 ELGADIVKTNYT---G-D-PESFREVVEGCP-VPVVIAGGPKT 207 (267)
T ss_pred HHCCCEEeeCCC---C-C-HHHHHHHHHhCC-CCEEEEeCCCC
Confidence 999987744421 1 1 133444444444 89999987664
No 74
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=63.92 E-value=20 Score=36.39 Aligned_cols=117 Identities=20% Similarity=0.258 Sum_probs=80.0
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCcE---eeecC--CCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCC
Q 005965 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADT---VMDLS--TGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIA 294 (667)
Q Consensus 220 ~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADt---VMDLS--TGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~ 294 (667)
.|||..=||=.......+.-+.-++.|++.|||- ||+++ ..++.+.+++.|-+-...- +.+|+.=-++.
T Consensus 53 ~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~-~g~~lKvIlE~----- 126 (211)
T TIGR00126 53 EVRICTVVGFPLGASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEAC-AGVLLKVIIET----- 126 (211)
T ss_pred CCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHc-CCCeEEEEEec-----
Confidence 5788888887777788888888999999999976 46665 2578888888776443221 12333221221
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecc-----cccccccc----ccCcccCcccccc
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAG-----VLLRYIPL----TAKRMTGIVSRGG 343 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaG-----v~~~~l~~----~~~RvtgIVSRGG 343 (667)
-.|+.+++....+--++.|+||+=.=.| .+.+.+.. ..+| .||.-.||
T Consensus 127 ~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~~-v~IKaaGG 183 (211)
T TIGR00126 127 GLLTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGDT-IGVKASGG 183 (211)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhccC-CeEEEeCC
Confidence 2378899999999999999999966533 44454442 1233 57887777
No 75
>PRK01060 endonuclease IV; Provisional
Probab=63.50 E-value=13 Score=37.20 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=48.3
Q ss_pred HHHHHHhCCcEeeecCCC------------CChHHHHHHHHhcCCCCcccc----hhhhHHHHhcCCCCCCCHHHHHHHH
Q 005965 243 VQWATMWGADTVMDLSTG------------RHIHETREWILRNSAVPVGTV----PIYQALEKVDGIAENLSWEVFRDTL 306 (667)
Q Consensus 243 l~~A~~~GADtVMDLSTG------------gdi~~~R~~Il~nspvPVGTV----PIYqAl~k~~g~~~~lt~e~~~d~i 306 (667)
++++-+.|.|.| +|..+ .++.++|+.+ +...+.++.+ |.+--+........+-+.+.+.+.|
T Consensus 18 l~~~~~~G~d~v-El~~~~p~~~~~~~~~~~~~~~lk~~~-~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i 95 (281)
T PRK01060 18 VAEAAEIGANAF-MIFTGNPQQWKRKPLEELNIEAFKAAC-EKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLIQEI 95 (281)
T ss_pred HHHHHHcCCCEE-EEECCCCCCCcCCCCCHHHHHHHHHHH-HHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHHHHH
Confidence 477889999998 34332 1356677654 5555655443 3221111001111234457788888
Q ss_pred HHHHhcCCCEEEEeccc
Q 005965 307 IEQAEQGVDYFTIHAGV 323 (667)
Q Consensus 307 eeQAeqGVDfmTIHaGv 323 (667)
+--.+-|+.++++|.|-
T Consensus 96 ~~A~~lga~~vv~h~G~ 112 (281)
T PRK01060 96 ERCAALGAKLLVFHPGS 112 (281)
T ss_pred HHHHHcCCCEEEEcCCc
Confidence 88889999999999984
No 76
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=63.49 E-value=37 Score=38.87 Aligned_cols=186 Identities=20% Similarity=0.285 Sum_probs=112.3
Q ss_pred HHHHcCCcCch------hhhHHHHHHHHhHhceeEe---cc---CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe
Q 005965 349 WCLAYHKENFA------YEHWDEILDICNQYDVALS---IG---DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ 416 (667)
Q Consensus 349 Wml~h~~ENpL------Ye~FD~ileI~k~YDVtlS---LG---DGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQ 416 (667)
||+-..|-=|| +++-||||..-.+..|.+- .| -.|=|=||.=| -|+-|- -.|.++||.
T Consensus 175 YnlPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtLvPPsisia---v~ilE~-------Lla~eqGVk 244 (480)
T TIGR01503 175 YNIPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTLVPPSISNA---IGIIEG-------LLAAEQGVK 244 (480)
T ss_pred eccccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCccChHHHHH---HHHHHH-------HHHHHcCCe
Confidence 44444444444 2334566655556588763 33 34444444322 233332 257899999
Q ss_pred EEeeC---CCCCCCCchHHHHHHHHHhcCC-CC------------cc-ccCccccccCCCchhHHHhHHHHHhhhcccce
Q 005965 417 VMNEG---PGHIPMHKIPENMQKQLEWCNE-AP------------FY-TLGPLTTDIAPGYDHITSAIGAANIGALGTAL 479 (667)
Q Consensus 417 VMIEG---PGHVPl~~I~~Nv~lqk~lC~~-AP------------fY-vLGPLvTDIApGYDHItsAIGaA~aa~~Gadf 479 (667)
-+-=| -||+ .+.|+ -+..-+++|++ .| || -.|+.++|-+-.|-=|+ -|+++|+..||+=
T Consensus 245 sisvgy~Q~Gn~-~QDia-ai~aL~~l~~eYl~~~g~~Dv~i~tV~hqwMG~FP~d~~~A~~lis--~~a~~A~l~gA~K 320 (480)
T TIGR01503 245 NITVGYGQVGNL-TQDIA-ALRALEEQTNEYLKAYGYNDVFVTTVFHQWMGGFPEDESKAFGVIS--TATTIAALSGATK 320 (480)
T ss_pred EEEeccccCCCh-HHHHH-HHHHHHHHHHHHHHhCCCCceEEEEEeeeccCCCCCChhhhhhHHH--HHHHHHHHcCCCE
Confidence 88777 3553 22333 34444444432 22 22 25999999998886654 6899999999999
Q ss_pred eeecCcccccCCCChhHHHHHHHHHHHHHHHhhhhcCCcchh--hHHHHHHHHHhh--cCHHHHHhccCChHHHHhh
Q 005965 480 LCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQ--TWDDALSKARFE--FRWMDQFALSLDPMTAMSF 552 (667)
Q Consensus 480 LCYVTPaEHLgLP~~eDVreGVIA~kIAAHaaDlaKg~p~A~--~rD~~mS~AR~~--~dWe~Qf~LalDPe~Ar~~ 552 (667)
+=-=||.|-+|.|+.+.=-.|+-++|-++ ++.++.+-.. +-+.+++.-..| -=-++-|++. |++-++..
T Consensus 321 vIvKT~~EA~gIPt~eaN~~~l~~tk~~~---~~l~~q~~~~~~~~~~E~~~i~~Ev~~Ild~Vle~g-~gDl~~g~ 393 (480)
T TIGR01503 321 VIVKSPHEAIGIPTAEANAAGLKATKQAL---NMLNEQKIPMSKEVETEMALIKAETRCILDKVFELG-DGDLARGT 393 (480)
T ss_pred EEecCHHHHcCCCCHHHHHHHHHHHHHHH---HHhccCCCCCchhhhHHHHHHHHHHHHHHHHHHhcC-CCcHHHHH
Confidence 99999999999999999999998887765 7766632221 112232222222 2235667776 55555533
No 77
>PRK09206 pyruvate kinase; Provisional
Probab=62.82 E-value=41 Score=38.20 Aligned_cols=95 Identities=21% Similarity=0.148 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcC---------CcCc-hhhhH
Q 005965 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYH---------KENF-AYEHW 363 (667)
Q Consensus 294 ~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~---------~ENp-LYe~F 363 (667)
+..||+.|..| |+--+++||||+.+-.==+.+.+.. +..|+...+ =||+ -++++
T Consensus 167 lp~ltekD~~d-i~f~~~~~vD~ia~SFVr~~~Dv~~---------------~r~~l~~~~~~~~~iiaKIEt~eav~nl 230 (470)
T PRK09206 167 LPALAEKDKQD-LIFGCEQGVDFVAASFIRKRSDVLE---------------IREHLKAHGGENIQIISKIENQEGLNNF 230 (470)
T ss_pred CCCCCHHHHHH-HHHHHHcCCCEEEEcCCCCHHHHHH---------------HHHHHHHcCCCCceEEEEECCHHHHHhH
Confidence 35688888877 7888999999998754222222221 112222222 2333 36788
Q ss_pred HHHHHHH-----hHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 005965 364 DEILDIC-----NQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (667)
Q Consensus 364 D~ileI~-----k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (667)
|+||+.+ .+.|..+++| -..+.+ .+-++.+.|+++|+.|++
T Consensus 231 deIl~~~DgImVaRGDLgvelg-------------~e~vp~--~qk~ii~~~~~~gkpvI~ 276 (470)
T PRK09206 231 DEILEASDGIMVARGDLGVEIP-------------VEEVIF--AQKMMIEKCNRARKVVIT 276 (470)
T ss_pred HHHHHhCCEEEECcchhhhhcC-------------HHHHHH--HHHHHHHHHHHcCCCEEE
Confidence 8888873 3456666666 223333 467889999999999887
No 78
>TIGR03586 PseI pseudaminic acid synthase.
Probab=62.61 E-value=1.1e+02 Score=33.32 Aligned_cols=127 Identities=14% Similarity=0.146 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecccccccccc-ccCcccCccccccHH--HHHHHHHcCCcCchhhhHHHHHHHHhHhc
Q 005965 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPL-TAKRMTGIVSRGGSI--HAKWCLAYHKENFAYEHWDEILDICNQYD 374 (667)
Q Consensus 298 t~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~-~~~RvtgIVSRGGSi--~a~Wml~h~~ENpLYe~FD~ileI~k~YD 374 (667)
+.|..++.|..-++.|.|.+-+.. .+.+.+-. ...+ ...+++|.. ...|=+....|-+ ++.|-+|.+.|++++
T Consensus 15 ~~~~A~~lI~~A~~aGAdavKFQ~-~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~el~-~e~~~~L~~~~~~~G 90 (327)
T TIGR03586 15 SLERALAMIEAAKAAGADAIKLQT-YTPDTITLDSDRP--EFIIKGGLWDGRTLYDLYQEAHTP-WEWHKELFERAKELG 90 (327)
T ss_pred hHHHHHHHHHHHHHhCCCEEEeee-ccHHHhhcccccc--ccccccCCcCCccHHHHHHHhhCC-HHHHHHHHHHHHHhC
Confidence 457888999999999999766654 23333221 1111 122233211 1111111123433 577788999999999
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHH--------------HHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHH
Q 005965 375 VALSIGDGLRPGSIYDANDTAQFAELLTQ--------------GELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLE 439 (667)
Q Consensus 375 VtlSLGDGLRPG~iaDA~D~AQ~~EL~~L--------------GEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~ 439 (667)
+.+ +...-|..++.+|..+ -.|.+..-+.|.-|++.=.+ --+++|..-+..-++
T Consensus 91 i~~----------~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~-~t~~Ei~~Av~~i~~ 158 (327)
T TIGR03586 91 LTI----------FSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGI-ATLEEIQEAVEACRE 158 (327)
T ss_pred CcE----------EEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCC-CCHHHHHHHHHHHHH
Confidence 977 4567788888888777 68889999999999998766 589999888876553
No 79
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=62.04 E-value=26 Score=31.02 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=56.0
Q ss_pred HhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCC--CHHHHHHHHHHHHhcCCCEEEEeccccc
Q 005965 248 MWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENL--SWEVFRDTLIEQAEQGVDYFTIHAGVLL 325 (667)
Q Consensus 248 ~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~l--t~e~~~d~ieeQAeqGVDfmTIHaGv~~ 325 (667)
.+|..+|.||.+.... .......+..=.+|+-+ ....++ .++.+.+.|++..++|- -+-|||-
T Consensus 25 ~~gi~~VI~l~~~~~~-----~~~~~~~~~~~~~~~~D------~~~~~~~~~~~~~~~~i~~~~~~~~-~vlVHC~--- 89 (139)
T cd00127 25 KLGITHVLNVAKEVPN-----ENLFLSDFNYLYVPILD------LPSQDISKYFDEAVDFIDDAREKGG-KVLVHCL--- 89 (139)
T ss_pred HcCCCEEEEcccCCCC-----cccCCCCceEEEEEcee------CCCCChHHHHHHHHHHHHHHHhcCC-cEEEECC---
Confidence 4999999999887654 11111122222233322 111222 24556677777777775 5779992
Q ss_pred cccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH
Q 005965 326 RYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ 372 (667)
Q Consensus 326 ~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~ 372 (667)
.| .||.|.+++.|.+.+...+| ++.++..++
T Consensus 90 ------~G-----~~Rs~~~~~~~l~~~~~~~~-----~~a~~~vr~ 120 (139)
T cd00127 90 ------AG-----VSRSATLVIAYLMKTLGLSL-----REAYEFVKS 120 (139)
T ss_pred ------CC-----CchhHHHHHHHHHHHcCCCH-----HHHHHHHHH
Confidence 33 48999999999988776533 555555554
No 80
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=61.97 E-value=1.7e+02 Score=32.88 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=44.6
Q ss_pred eEeeccccCCCCCChHHHHHHHHHHHHhCCcEee-ecCCCC--ChHHHHHHHHhcC---CCCcccchhhhHHHHhcCCCC
Q 005965 222 KVNANIGNSAVASSIEEEVYKVQWATMWGADTVM-DLSTGR--HIHETREWILRNS---AVPVGTVPIYQALEKVDGIAE 295 (667)
Q Consensus 222 KVNANIGtS~~~~~ieeEveKl~~A~~~GADtVM-DLSTGg--di~~~R~~Il~ns---pvPVGTVPIYqAl~k~~g~~~ 295 (667)
-|-|.+|++. +-++.+...+++|+|-|- |.+-|. .+.++=++|-+.. +|-+|-|--++...
T Consensus 143 ~v~aavg~~~------~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~------- 209 (404)
T PRK06843 143 RVGAAVSIDI------DTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAAL------- 209 (404)
T ss_pred EEEEEEeCCH------HHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHH-------
Confidence 3555666532 245667777788999985 776663 3333444443333 23355554444332
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecccccccc
Q 005965 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYI 328 (667)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l 328 (667)
+ -.+.|+|++-+ |++...+
T Consensus 210 --------~----l~~aGaD~I~v--G~g~Gs~ 228 (404)
T PRK06843 210 --------D----LISVGADCLKV--GIGPGSI 228 (404)
T ss_pred --------H----HHHcCCCEEEE--CCCCCcC
Confidence 2 23459999874 6655443
No 81
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=61.93 E-value=14 Score=39.51 Aligned_cols=66 Identities=27% Similarity=0.261 Sum_probs=43.2
Q ss_pred HHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Q 005965 240 VYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (667)
Q Consensus 240 veKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTI 319 (667)
+|-+..|+++|||.|| | ..-..+++|+.+=.. .+. + .++.++-|.+ =+++|.+-|+-||||+.+
T Consensus 198 le~~~eAl~agaDiIm-L-DNm~~e~~~~av~~l-~~~----~--~~~lEaSGgI-------t~~ni~~yA~tGVD~IS~ 261 (280)
T COG0157 198 LEEAEEALEAGADIIM-L-DNMSPEELKEAVKLL-GLA----G--RALLEASGGI-------TLENIREYAETGVDVISV 261 (280)
T ss_pred HHHHHHHHHcCCCEEE-e-cCCCHHHHHHHHHHh-ccC----C--ceEEEEeCCC-------CHHHHHHHhhcCCCEEEe
Confidence 3557788999999999 4 344678888766432 111 1 2333333332 258899999999999976
Q ss_pred ec
Q 005965 320 HA 321 (667)
Q Consensus 320 Ha 321 (667)
=+
T Consensus 262 ga 263 (280)
T COG0157 262 GA 263 (280)
T ss_pred Cc
Confidence 43
No 82
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=61.60 E-value=1.3e+02 Score=30.56 Aligned_cols=176 Identities=16% Similarity=0.144 Sum_probs=95.3
Q ss_pred CCCCCChHHHHHHHHHHHHhCCcE----eeecCCCCChH---HHHHHHHhc-CCCCcccchhhhHHHHhcCCCCCCCHHH
Q 005965 230 SAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIH---ETREWILRN-SAVPVGTVPIYQALEKVDGIAENLSWEV 301 (667)
Q Consensus 230 S~~~~~ieeEveKl~~A~~~GADt----VMDLSTGgdi~---~~R~~Il~n-spvPVGTVPIYqAl~k~~g~~~~lt~e~ 301 (667)
|++...+++|++++. ++|+|. |||=.--.||. .+=++|-+. +++|+ + +-=|. +.
T Consensus 8 ~ad~~~l~~~i~~l~---~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~------d--------vHLMv-~~ 69 (220)
T PRK08883 8 SADFARLGEDVEKVL---AAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPI------D--------VHLMV-KP 69 (220)
T ss_pred hcCHHHHHHHHHHHH---HcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCE------E--------EEecc-CC
Confidence 555667788887765 578888 67743333321 122233222 23331 1 11111 12
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCc-----CchhhhHHHHHHHHhHhcee
Q 005965 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKE-----NFAYEHWDEILDICNQYDVA 376 (667)
Q Consensus 302 ~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~E-----NpLYe~FD~ileI~k~YDVt 376 (667)
-.+.|+.-++.|+|++|||+--+.. +.+ +..|+..++.. || .|-++.|..++..-|..
T Consensus 70 p~~~i~~~~~~gad~i~~H~Ea~~~-~~~---------------~l~~ik~~g~k~GlalnP-~Tp~~~i~~~l~~~D~v 132 (220)
T PRK08883 70 VDRIIPDFAKAGASMITFHVEASEH-VDR---------------TLQLIKEHGCQAGVVLNP-ATPLHHLEYIMDKVDLI 132 (220)
T ss_pred HHHHHHHHHHhCCCEEEEcccCccc-HHH---------------HHHHHHHcCCcEEEEeCC-CCCHHHHHHHHHhCCeE
Confidence 3345667778999999999975421 111 12344444433 66 37888899999999988
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCc
Q 005965 377 LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGP 451 (667)
Q Consensus 377 lSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGP 451 (667)
|=+ +.-||--.=.--...+. .+.+|.+.-.++|..+-|+-=|-+- .+|+..-.+ .||=.++.|-
T Consensus 133 lvM--tV~PGfgGq~fi~~~le---kI~~l~~~~~~~~~~~~I~vdGGI~----~eni~~l~~--aGAd~vVvGS 196 (220)
T PRK08883 133 LLM--SVNPGFGGQSFIPHTLD---KLRAVRKMIDESGRDIRLEIDGGVK----VDNIREIAE--AGADMFVAGS 196 (220)
T ss_pred EEE--EecCCCCCceecHhHHH---HHHHHHHHHHhcCCCeeEEEECCCC----HHHHHHHHH--cCCCEEEEeH
Confidence 887 67787654433333333 3444444434455333333344443 445554333 4566666663
No 83
>PRK08323 phenylhydantoinase; Validated
Probab=61.34 E-value=2.3e+02 Score=30.67 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=36.1
Q ss_pred HHHHHhCCcEeeecCCCCCh---HH----HHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCE
Q 005965 244 QWATMWGADTVMDLSTGRHI---HE----TREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDY 316 (667)
Q Consensus 244 ~~A~~~GADtVMDLSTGgdi---~~----~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDf 316 (667)
+.|++.|.-|++|.....+. .+ .++....++.+-+|. +- .+.. +.++.++.+++..+.|++.
T Consensus 76 ~~a~~~GvTt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~-------~~~~-~~~~~~~~~~~~~~~g~~~ 144 (459)
T PRK08323 76 RAAACGGTTTIIDFALQPKGQSLREALEAWHGKAAGKAVIDYGF---HM-------IITD-WNEVVLDEMPELVEEGITS 144 (459)
T ss_pred HHHHhCCCCEEEeCcCCCCCCChHHHHHHHHHHhccCceEEEEE---EE-------EecC-CcHHHHHHHHHHHHcCCCE
Confidence 57789999999997644332 22 222222222222221 10 0111 1234566777777889887
Q ss_pred EEEec
Q 005965 317 FTIHA 321 (667)
Q Consensus 317 mTIHa 321 (667)
+.++.
T Consensus 145 ik~~~ 149 (459)
T PRK08323 145 FKLFM 149 (459)
T ss_pred EEEEE
Confidence 77764
No 84
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=60.94 E-value=62 Score=31.78 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=50.1
Q ss_pred hHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCch
Q 005965 362 HWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKI 430 (667)
Q Consensus 362 ~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I 430 (667)
+.+++.+++++|++.++.-..+... ..+..+...-+-+..+-...+.|.+.|+.++|--+|.++-+..
T Consensus 46 ~~~~l~~~l~~~gl~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~ 113 (274)
T COG1082 46 ELAELKELLADYGLEITSLAPFSNN-LLSPDEEEREEALEELKRAIELAKELGAKVVVVHPGLGAGADD 113 (274)
T ss_pred hHHHHHHHHHHcCcEEEeecccCCC-cCCCchhhHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCC
Confidence 3799999999999999998888876 4444444332333444447888999999999988877666544
No 85
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=60.92 E-value=46 Score=33.39 Aligned_cols=81 Identities=10% Similarity=-0.020 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHH-HHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHH
Q 005965 360 YEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAE-LLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQL 438 (667)
Q Consensus 360 Ye~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~E-L~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk 438 (667)
.+.|.+.++.|++.++..=.=.|.+++. +..+...+.. ...|-+|.++|.++||.+.+|-=..-.+.....-+++.+
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~ll~ 175 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLAGYDVYY--EQANNETRRRFIDGLKESVELASRASVTLAFEIMDTPFMNSISKALGYAH 175 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccc--cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHHHHHHHH
Confidence 5678999999999997653222333221 1122323222 236788999999999999999744446677787888877
Q ss_pred HhcC
Q 005965 439 EWCN 442 (667)
Q Consensus 439 ~lC~ 442 (667)
++.+
T Consensus 176 ~v~~ 179 (283)
T PRK13209 176 YLNS 179 (283)
T ss_pred HhCC
Confidence 7644
No 86
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=60.48 E-value=76 Score=31.70 Aligned_cols=78 Identities=10% Similarity=0.050 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHhHhcee-EeccCCCCCCCccCCCcHHHHHHH-HHHHHHHHHHHhcCCeEEeeCCCC--C---CCCchHH
Q 005965 360 YEHWDEILDICNQYDVA-LSIGDGLRPGSIYDANDTAQFAEL-LTQGELTRRAWDKDVQVMNEGPGH--I---PMHKIPE 432 (667)
Q Consensus 360 Ye~FD~ileI~k~YDVt-lSLGDGLRPG~iaDA~D~AQ~~EL-~~LGEL~krA~e~gVQVMIEGPGH--V---Pl~~I~~ 432 (667)
-+++++.+++|++.++. +.+--|-.|+. -.++..+..+ ..|.+|.+.|.++||++.+|--+| . .++-.+.
T Consensus 84 ~~~~~~~i~~a~~lga~~i~~~~g~~~~~---~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~ 160 (258)
T PRK09997 84 RDGVAAAIRYARALGNKKINCLVGKTPAG---FSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQ 160 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCCccCCHHH
Confidence 47799999999999996 34333323322 2223223333 467899999999999999996444 2 3555666
Q ss_pred HHHHHHHh
Q 005965 433 NMQKQLEW 440 (667)
Q Consensus 433 Nv~lqk~l 440 (667)
-.++.+++
T Consensus 161 ~~~ll~~v 168 (258)
T PRK09997 161 ALKLIDDV 168 (258)
T ss_pred HHHHHHHh
Confidence 55665553
No 87
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=60.06 E-value=1.3e+02 Score=32.16 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEecc
Q 005965 297 LSWEVFRDTLIEQAEQGVDYFTIHAG 322 (667)
Q Consensus 297 lt~e~~~d~ieeQAeqGVDfmTIHaG 322 (667)
-|.++..+.+..-.+.|||++|||+.
T Consensus 148 ~t~~~~~~~~~~l~~aG~d~i~vh~R 173 (333)
T PRK11815 148 DSYEFLCDFVDTVAEAGCDTFIVHAR 173 (333)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 35677777777777889999999964
No 88
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=59.27 E-value=29 Score=34.31 Aligned_cols=163 Identities=20% Similarity=0.230 Sum_probs=94.8
Q ss_pred CCChHHHHHHHHHHHHhCCcEe---eecCCCCChHHHHHHH---HhcCCCCcccchhhhHHHHh--cCCCCCCCHHHHHH
Q 005965 233 ASSIEEEVYKVQWATMWGADTV---MDLSTGRHIHETREWI---LRNSAVPVGTVPIYQALEKV--DGIAENLSWEVFRD 304 (667)
Q Consensus 233 ~~~ieeEveKl~~A~~~GADtV---MDLSTGgdi~~~R~~I---l~nspvPVGTVPIYqAl~k~--~g~~~~lt~e~~~d 304 (667)
.+++++-++.++.+...|||.| +|+....+...+.+.+ .++.++ |+-=.+... ||. -.++.+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~-----piI~T~R~~~eGG~-~~~~~~~~~~ 79 (224)
T PF01487_consen 6 GSTLEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDL-----PIIFTVRTKEEGGR-FQGSEEEYLE 79 (224)
T ss_dssp -SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTS-----EEEEE--BGGGTSS-BSS-HHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCC-----CEEEEecccccCCC-CcCCHHHHHH
Confidence 4567777777777777799998 8998866665555544 334444 443333322 555 4899999999
Q ss_pred HHHHHHhcCCCEEEEeccccccccc----cccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEecc
Q 005965 305 TLIEQAEQGVDYFTIHAGVLLRYIP----LTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIG 380 (667)
Q Consensus 305 ~ieeQAeqGVDfmTIHaGv~~~~l~----~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLG 380 (667)
.++.-++.|+||+.|=.-...+.+. ...++.-=|+|. |+-...|-.+...++++-+++++.
T Consensus 80 ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~----------H~f~~tp~~~~l~~~~~~~~~~ga----- 144 (224)
T PF01487_consen 80 LLERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSY----------HDFEKTPSWEELIELLEEMQELGA----- 144 (224)
T ss_dssp HHHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEE----------EESS---THHHHHHHHHHHHHTT------
T ss_pred HHHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEe----------ccCCCCCCHHHHHHHHHHHHhcCC-----
Confidence 9999999999999997764444332 222444445553 345777777777777777776441
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhc-CCeEEeeC
Q 005965 381 DGLRPGSIYDANDTAQFAELLTQGELTRRAWDK-DVQVMNEG 421 (667)
Q Consensus 381 DGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~-gVQVMIEG 421 (667)
|-.+-=+. +++... ...|-++++.+.+. +..++.=+
T Consensus 145 divKia~~--~~~~~D---~~~l~~~~~~~~~~~~~p~i~~~ 181 (224)
T PF01487_consen 145 DIVKIAVM--ANSPED---VLRLLRFTKEFREEPDIPVIAIS 181 (224)
T ss_dssp SEEEEEEE---SSHHH---HHHHHHHHHHHHHHTSSEEEEEE
T ss_pred CeEEEEec--cCCHHH---HHHHHHHHHHHhhccCCcEEEEE
Confidence 44443222 233333 33444555555543 55555433
No 89
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=58.86 E-value=1.4e+02 Score=29.04 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCCCEEEEecc
Q 005965 300 EVFRDTLIEQAEQGVDYFTIHAG 322 (667)
Q Consensus 300 e~~~d~ieeQAeqGVDfmTIHaG 322 (667)
+++.+.+..-.+.||||++||.+
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGR 160 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCC
Confidence 46666666666779999999975
No 90
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=58.85 E-value=1.8e+02 Score=30.19 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=46.0
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCH
Q 005965 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSW 299 (667)
Q Consensus 220 ~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~ 299 (667)
++.++++++. .+.++-++.++.+.+.|-++ +++-.|++.++..+.| +..--.+|.++| ...++ ...+.
T Consensus 123 ~~~~~~~~~~----~~~~~~~~~~~~~~~~Gf~~-iKik~g~~~~~d~~~v-~~lr~~~g~~~l---~vD~n---~~~~~ 190 (316)
T cd03319 123 PLETDYTISI----DTPEAMAAAAKKAAKRGFPL-LKIKLGGDLEDDIERI-RAIREAAPDARL---RVDAN---QGWTP 190 (316)
T ss_pred CceeEEEEeC----CCHHHHHHHHHHHHHcCCCE-EEEEeCCChhhHHHHH-HHHHHhCCCCeE---EEeCC---CCcCH
Confidence 3445555542 35666567777778889654 4666676654433222 111100113333 11222 23566
Q ss_pred HHHHHHHHHHHhcCCCEE
Q 005965 300 EVFRDTLIEQAEQGVDYF 317 (667)
Q Consensus 300 e~~~d~ieeQAeqGVDfm 317 (667)
++.++.+..-.+.|++|+
T Consensus 191 ~~A~~~~~~l~~~~l~~i 208 (316)
T cd03319 191 EEAVELLRELAELGVELI 208 (316)
T ss_pred HHHHHHHHHHHhcCCCEE
Confidence 777777766667788888
No 91
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=58.54 E-value=79 Score=34.62 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeE
Q 005965 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVAL 377 (667)
Q Consensus 298 t~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtl 377 (667)
+.+.++++-++-.+.||.|+-- |. ..+|--+ .| -++.+ ++.+..|-++|+++++.+
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r~--~~-------~kpRtsp----~~----------f~g~~-~e~l~~L~~~~~~~Gl~~ 185 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLRG--GA-------FKPRTSP----YD----------FQGLG-VEGLKILKQVADEYGLAV 185 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEEc--cc-------cCCCCCC----cc----------ccCCC-HHHHHHHHHHHHHcCCCE
Confidence 4677778777777889887751 11 1133221 11 23333 588999999999999976
Q ss_pred eccCCCCCCCccCCCcHHHHHHHHH-------------HHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHH-----
Q 005965 378 SIGDGLRPGSIYDANDTAQFAELLT-------------QGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLE----- 439 (667)
Q Consensus 378 SLGDGLRPG~iaDA~D~AQ~~EL~~-------------LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~----- 439 (667)
+.+..|..|+.++.. .-+|.+.+-+.|.-|++.=+=+--+.+|..-++.-.+
T Consensus 186 ----------~t~v~d~~~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~ 255 (360)
T PRK12595 186 ----------ISEIVNPADVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQ 255 (360)
T ss_pred ----------EEeeCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 456666666666643 4578889999999999998877888888877766543
Q ss_pred --hcC-CCCcc
Q 005965 440 --WCN-EAPFY 447 (667)
Q Consensus 440 --lC~-~APfY 447 (667)
||| +--+|
T Consensus 256 i~L~erg~s~y 266 (360)
T PRK12595 256 IILCERGIRTY 266 (360)
T ss_pred EEEECCccCCC
Confidence 676 54444
No 92
>PRK12677 xylose isomerase; Provisional
Probab=58.40 E-value=31 Score=37.79 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=54.3
Q ss_pred hhhhHHHHHHHHhHhcee-EeccCCCCCCCccC-CCcHHHHHHH--HHHHHHHHHHHhcC--CeEEeeC-C----CCCCC
Q 005965 359 AYEHWDEILDICNQYDVA-LSIGDGLRPGSIYD-ANDTAQFAEL--LTQGELTRRAWDKD--VQVMNEG-P----GHIPM 427 (667)
Q Consensus 359 LYe~FD~ileI~k~YDVt-lSLGDGLRPG~iaD-A~D~AQ~~EL--~~LGEL~krA~e~g--VQVMIEG-P----GHVPl 427 (667)
-.+++-+-+|++++.++. +.+=-| |.|.-.+ +.|..+..+. .-|.+|.+.|.++| |++.||= | +++-+
T Consensus 112 Ai~~~~r~IdlA~eLGa~~Vvv~~G-~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~ep~~~~~l 190 (384)
T PRK12677 112 ALRKVLRNIDLAAELGAKTYVMWGG-REGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKPNEPRGDILL 190 (384)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeC-CCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCCCeee
Confidence 477889999999999863 443333 5555332 2343333332 45789999999955 9999996 2 24566
Q ss_pred CchHHHHHHHHHhc
Q 005965 428 HKIPENMQKQLEWC 441 (667)
Q Consensus 428 ~~I~~Nv~lqk~lC 441 (667)
+.+..-..+.+++=
T Consensus 191 ~t~~~al~li~~lg 204 (384)
T PRK12677 191 PTVGHALAFIATLE 204 (384)
T ss_pred CCHHHHHHHHHHhC
Confidence 77777777777653
No 93
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=57.85 E-value=60 Score=35.04 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=37.0
Q ss_pred CcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHH----------HHHHHHHHhcCCeEEe
Q 005965 355 KENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQ----------GELTRRAWDKDVQVMN 419 (667)
Q Consensus 355 ~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~L----------GEL~krA~e~gVQVMI 419 (667)
+..+-.+...++++++++|++.+ ..++......+.+...+ .|.++.+.+.|+.++.
T Consensus 208 ~~~~~~e~i~~~v~~A~~~g~~v---------~sH~~~~~~~i~~a~~~Gv~~~e~~~~~e~~~~~~~~g~~v~~ 273 (383)
T PRK15446 208 SARYAPPNRRAIAALARARGIPL---------ASHDDDTPEHVAEAHALGVAIAEFPTTLEAARAARALGMSVLM 273 (383)
T ss_pred HhhcCHHHHHHHHHHHHHCCCce---------eecCCCCHHHHHHHHHcCCceeeCCCcHHHHHHHHHCCCEEEe
Confidence 44566789999999999998776 34442223355555543 4556677777887764
No 94
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=57.47 E-value=2.1e+02 Score=28.59 Aligned_cols=114 Identities=11% Similarity=0.116 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccC
Q 005965 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGD 381 (667)
Q Consensus 302 ~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGD 381 (667)
+-+.|++.++.|++.+-++++--+..... | .-.+..+++-+.+++|++.+|.--
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~~~---~-----------------------~~~~~~~~l~~~~~~~gl~ls~h~ 65 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWKGV---R-----------------------LSEETAEKFKEALKENNIDVSVHA 65 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCCCC---C-----------------------CCHHHHHHHHHHHHHcCCCEEEEC
Confidence 45788999999999999977643322111 1 224568889999999999998621
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchH----HHHHHHHHhcC
Q 005965 382 GLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIP----ENMQKQLEWCN 442 (667)
Q Consensus 382 GLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~----~Nv~lqk~lC~ 442 (667)
--...+++...+..-..+..+-+..+.|.+.|+.+++==||..+-..-+ ..++.-+++|.
T Consensus 66 -p~~~nl~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~ 129 (273)
T smart00518 66 -PYLINLASPDKEKVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVID 129 (273)
T ss_pred -CceecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHh
Confidence 1123455543333334466777888888899998887667766543323 33334555665
No 95
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=57.15 E-value=1.1e+02 Score=35.17 Aligned_cols=127 Identities=13% Similarity=0.067 Sum_probs=79.5
Q ss_pred HHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEecc
Q 005965 243 VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (667)
Q Consensus 243 l~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaG 322 (667)
++.|+++|||-|.|+|-+ +++++-+ +++.+.+|+=-+|. |. +-..+.+.+.++.-.+.||+=+-+=.|
T Consensus 221 ~eaAL~aGAdiINsVs~~-~~d~~~~-l~a~~g~~vVlm~~-~~---------~~~~~~l~~~ie~a~~~Gi~~IIlDPg 288 (499)
T TIGR00284 221 LYEALKAGASGVIMPDVE-NAVELAS-EKKLPEDAFVVVPG-NQ---------PTNYEELAKAVKKLRTSGYSKVAADPS 288 (499)
T ss_pred HHHHHHcCCCEEEECCcc-chhHHHH-HHHHcCCeEEEEcC-CC---------CchHHHHHHHHHHHHHCCCCcEEEeCC
Confidence 567888899999999765 7776643 56677777777774 11 111255666666666669964445555
Q ss_pred ccccccccccCcccCccccccHHHHHHHHHcCCcCc-hhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHH
Q 005965 323 VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENF-AYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELL 401 (667)
Q Consensus 323 v~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENp-LYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~ 401 (667)
+-. .|. +.+..+++-++-+++.+-+-+|= |.+..-.|+ .-+-
T Consensus 289 lg~------------------------------~~~~l~~sL~~l~~~r~~~~~Pil~Gv----SNvtel~da---Ds~g 331 (499)
T TIGR00284 289 LSP------------------------------PLLGLLESIIRFRRASRLLNVPLVFGA----ANVTELVDA---DSHG 331 (499)
T ss_pred CCc------------------------------chHHHHHHHHHHHHHHHhcCCcEEEee----ccccCCCcc---chhH
Confidence 520 122 67778888777667777666663 344333332 1222
Q ss_pred HHHHHHHHHHhcCCeEE
Q 005965 402 TQGELTRRAWDKDVQVM 418 (667)
Q Consensus 402 ~LGEL~krA~e~gVQVM 418 (667)
...-|+-.|-+.|+++.
T Consensus 332 ~naal~~~a~e~Ga~il 348 (499)
T TIGR00284 332 VNALLAAIALEAGASIL 348 (499)
T ss_pred HHHHHHHHHHHcCCCEE
Confidence 45567788999999854
No 96
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=56.91 E-value=3.5e+02 Score=31.31 Aligned_cols=47 Identities=21% Similarity=0.131 Sum_probs=33.9
Q ss_pred CCceEeecCC-ceeEeeccccCCCCCChHHHHHHHHHHHHhCCcEeeecCCC
Q 005965 210 LEPMIVGRNF-LVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTG 260 (667)
Q Consensus 210 ~~p~~IG~gl-~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADtVMDLSTG 260 (667)
+.+.-||... .+||=|-|=..+. +++-++++..-++.|||-| |+-.+
T Consensus 140 i~~~~i~~~~p~~~v~aEI~~a~~---l~~i~~~A~~~~~~GADII-DIG~~ 187 (499)
T TIGR00284 140 IGSLKIPLKPPPLRVVAEIPPTVA---EDGIEGLAARMERDGADMV-ALGTG 187 (499)
T ss_pred ccCcCCCCCCCCeEEEEEEcCCcc---hHHHHHHHHHHHHCCCCEE-EECCC
Confidence 3355677776 7888888865554 3666888888899999954 87443
No 97
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=56.90 E-value=2.5e+02 Score=29.34 Aligned_cols=175 Identities=16% Similarity=0.125 Sum_probs=97.3
Q ss_pred ChHHHHHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 005965 235 SIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (667)
Q Consensus 235 ~ieeEveKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGV 314 (667)
+.+-|..-++.|.++|+.-+.---++..+.++|+. .+-|+ -+-+|- ..+++.+.+.+++-.+.|+
T Consensus 79 ~~~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~----~~~~~-~~ql~~----------~~~~~~~~~~i~~~~~~g~ 143 (299)
T cd02809 79 HPDGELATARAAAAAGIPFTLSTVSTTSLEEVAAA----APGPR-WFQLYV----------PRDREITEDLLRRAEAAGY 143 (299)
T ss_pred CchHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHh----cCCCe-EEEEee----------cCCHHHHHHHHHHHHHcCC
Confidence 45566777888899998655432234456666644 23221 122221 1145777777777677899
Q ss_pred CEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcH
Q 005965 315 DYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDT 394 (667)
Q Consensus 315 DfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~ 394 (667)
|.+-+|.+.... ..| ..++.|-+|.++.++.+++..-
T Consensus 144 ~~i~l~~~~p~~-----~~~--------------------------~~~~~i~~l~~~~~~pvivK~v------------ 180 (299)
T cd02809 144 KALVLTVDTPVL-----GRR--------------------------LTWDDLAWLRSQWKGPLILKGI------------ 180 (299)
T ss_pred CEEEEecCCCCC-----CCC--------------------------CCHHHHHHHHHhcCCCEEEeec------------
Confidence 999999987531 122 2446666777777888887731
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEe-eC-CCCCCC---CchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHH
Q 005965 395 AQFAELLTQGELTRRAWDKDVQVMN-EG-PGHIPM---HKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGA 469 (667)
Q Consensus 395 AQ~~EL~~LGEL~krA~e~gVQVMI-EG-PGHVPl---~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHItsAIGa 469 (667)
.-.+.+++|.++||...+ .| .||..- ..+..--++.+.+...-|++.-|= |.-|. ++.-
T Consensus 181 -------~s~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GG----I~~~~-d~~k---- 244 (299)
T cd02809 181 -------LTPEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGG----IRRGT-DVLK---- 244 (299)
T ss_pred -------CCHHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCC----CCCHH-HHHH----
Confidence 113558899999998654 33 245321 112222222222222456555443 32332 2222
Q ss_pred HHhhhcccceeeecCc
Q 005965 470 ANIGALGTALLCYVTP 485 (667)
Q Consensus 470 A~aa~~GadfLCYVTP 485 (667)
+-..|||....-||
T Consensus 245 --al~lGAd~V~ig~~ 258 (299)
T cd02809 245 --ALALGADAVLIGRP 258 (299)
T ss_pred --HHHcCCCEEEEcHH
Confidence 22479998887663
No 98
>PTZ00293 thymidine kinase; Provisional
Probab=56.90 E-value=24 Score=36.17 Aligned_cols=89 Identities=17% Similarity=0.136 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcc-c-C-ccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhcee
Q 005965 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRM-T-G-IVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVA 376 (667)
Q Consensus 300 e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~Rv-t-g-IVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVt 376 (667)
..|+..+.+.-..|-..+.+-. ..+.|. . + ||||-|..+-+... +...++.+..+.|||.
T Consensus 19 teLLr~i~~y~~ag~kv~~~kp--------~~DtR~~~~~~I~Sh~g~~~~a~~v---------~~~~e~~~~~~~~dvI 81 (211)
T PTZ00293 19 TELMRLVKRFTYSEKKCVVIKY--------SKDTRYSDEQNISSHDKQMLKAIKV---------SKLKEVLETAKNYDVI 81 (211)
T ss_pred HHHHHHHHHHHHcCCceEEEEe--------cccccCCCCCcEEecCCCcceeEEc---------CCHHHHHHhccCCCEE
Confidence 4566677777777777665533 245565 1 2 89998866544222 2223334444778887
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeC
Q 005965 377 LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEG 421 (667)
Q Consensus 377 lSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEG 421 (667)
+ -|++||-+ .+-+|++.+...|+.|++=|
T Consensus 82 ~--------------IDEaQFf~--~i~~~~~~l~~~g~~VivaG 110 (211)
T PTZ00293 82 A--------------IDEGQFFP--DLVEFSEAAANLGKIVIVAA 110 (211)
T ss_pred E--------------EEchHhhH--hHHHHHHHHHHCCCeEEEEe
Confidence 5 59999964 57788899999999999988
No 99
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=56.65 E-value=54 Score=32.44 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=60.0
Q ss_pred HHHHHHHhCCcEeeecCCC--CChHHHHHHHHhcCCC--CcccchhhhHHH----Hh--cCCCCCCCHHHHHHHHHHHHh
Q 005965 242 KVQWATMWGADTVMDLSTG--RHIHETREWILRNSAV--PVGTVPIYQALE----KV--DGIAENLSWEVFRDTLIEQAE 311 (667)
Q Consensus 242 Kl~~A~~~GADtVMDLSTG--gdi~~~R~~Il~nspv--PVGTVPIYqAl~----k~--~g~~~~lt~e~~~d~ieeQAe 311 (667)
.+..+..+|+|.|+ |.|. .|.+.+++.+ +.-+. .+-+|-++.-+. ++ .+- .+.+..+..+.+.+-.+
T Consensus 88 d~~~~~~~G~~~vi-lg~~~l~~~~~~~~~~-~~~~~~~i~vsld~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~ 164 (232)
T TIGR03572 88 DAKKLLSLGADKVS-INTAALENPDLIEEAA-RRFGSQCVVVSIDVKKELDGSDYKVYSDNG-RRATGRDPVEWAREAEQ 164 (232)
T ss_pred HHHHHHHcCCCEEE-EChhHhcCHHHHHHHH-HHcCCceEEEEEEeccCCCCCcEEEEECCC-cccCCCCHHHHHHHHHH
Confidence 33345667999774 4443 3444444443 43221 233444443210 00 010 12233445677777788
Q ss_pred cCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCC
Q 005965 312 QGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLR 384 (667)
Q Consensus 312 qGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLR 384 (667)
.|+|++++|. +++.|. .+.| +|+.+-+|++.-++-+-.+-|+|
T Consensus 165 ~G~d~i~i~~-----------------i~~~g~----------~~g~---~~~~~~~i~~~~~ipvia~GGi~ 207 (232)
T TIGR03572 165 LGAGEILLNS-----------------IDRDGT----------MKGY---DLELIKTVSDAVSIPVIALGGAG 207 (232)
T ss_pred cCCCEEEEeC-----------------CCccCC----------cCCC---CHHHHHHHHhhCCCCEEEECCCC
Confidence 9999999996 222222 3334 36667777777788888887775
No 100
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=56.60 E-value=5.5 Score=44.33 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=89.7
Q ss_pred HHHHHHhCCcEeeecCCC-----------CChHHHHHHHHhcCCCCcc----cchhhh-HHHHhcCCCCCCCHHHHHHHH
Q 005965 243 VQWATMWGADTVMDLSTG-----------RHIHETREWILRNSAVPVG----TVPIYQ-ALEKVDGIAENLSWEVFRDTL 306 (667)
Q Consensus 243 l~~A~~~GADtVMDLSTG-----------gdi~~~R~~Il~nspvPVG----TVPIYq-Al~k~~g~~~~lt~e~~~d~i 306 (667)
+..|...||+|++=.+.. .++.++|+.+-+. .+.+. --| |- -+.--+..+-+.+.+.|.+.|
T Consensus 147 ~~~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~-gi~~~~i~~Hap-YlINLASpd~e~rekSv~~~~~eL 224 (413)
T PTZ00372 147 PINAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKY-NYDPKFILPHGS-YLINLANPDKEKREKSYDAFLDDL 224 (413)
T ss_pred HHHHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHc-CCCcceEEeecC-ceecCCCCCHHHHHHHHHHHHHHH
Confidence 478999999999854322 3456666665443 22211 223 32 111111122345678899999
Q ss_pred HHHHhcCCCEEEEecccccccc------ccccCcccCccccccHHHHHHHHHc--CCcCchhhhHHHHHHHHhHh-----
Q 005965 307 IEQAEQGVDYFTIHAGVLLRYI------PLTAKRMTGIVSRGGSIHAKWCLAY--HKENFAYEHWDEILDICNQY----- 373 (667)
Q Consensus 307 eeQAeqGVDfmTIHaGv~~~~l------~~~~~RvtgIVSRGGSi~a~Wml~h--~~ENpLYe~FD~ileI~k~Y----- 373 (667)
+.-.+-|++++++|.|-....- .+...-+--+.++... ...++.| ++.|.+...|++|.+|+..-
T Consensus 225 ~rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la~~~g--V~IlLENmag~g~~lG~~~eeL~~Iid~v~~~~r 302 (413)
T PTZ00372 225 QRCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHEETKS--VIIVLENTAGQKNSVGSKFEDLRDIIALVEDKSR 302 (413)
T ss_pred HHHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHhCcCC--CEEEEecCCCCCCcccCCHHHHHHHHHhcCCcCC
Confidence 9999999999999999753211 1111001111222222 2245554 45788888888888888753
Q ss_pred -ceeEeccCCCCCCCccCCCcHHHHHHHH
Q 005965 374 -DVALSIGDGLRPGSIYDANDTAQFAELL 401 (667)
Q Consensus 374 -DVtlSLGDGLRPG~iaDA~D~AQ~~EL~ 401 (667)
.|+|=.+-.+-.| +|-.+...+.+++
T Consensus 303 lGvCLDTcHafaAG--ydl~t~e~~~~~l 329 (413)
T PTZ00372 303 VGVCLDTCHLFAAG--YDIRTKESFDKVM 329 (413)
T ss_pred eEEEEEHHHHHhcC--CCCCcHHHHHHHH
Confidence 3777777777666 6666666666554
No 101
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=56.32 E-value=68 Score=35.55 Aligned_cols=212 Identities=17% Similarity=0.205 Sum_probs=134.3
Q ss_pred EeecCCceeEeeccccCCCCCChHHHHHHHHHHHHhCCcEe----eecCCCCChHHHHHHHHhcCCCCcccchhhhHHHH
Q 005965 214 IVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV----MDLSTGRHIHETREWILRNSAVPVGTVPIYQALEK 289 (667)
Q Consensus 214 ~IG~gl~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADtV----MDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k 289 (667)
.||-+--+-|-.= |..++.|++.-++....-.++|+|-| -|.-....|.+||+ .+++|+
T Consensus 13 ~IGG~~PI~VQSM--tnt~T~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~----~~~iPl----------- 75 (346)
T TIGR00612 13 PVGGDAPIVVQSM--TNTDTIDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKE----GTNVPL----------- 75 (346)
T ss_pred eECCCCcEEEEec--CCCCchhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHh----CCCCCE-----------
Confidence 3444444444322 45668899999999999999999954 45444455555554 777765
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHH
Q 005965 290 VDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDI 369 (667)
Q Consensus 290 ~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI 369 (667)
+.|+--| ...-.+-+++|||-+-|-.|= |-+ .++|.++.+.
T Consensus 76 ----VADIHFd--~~lAl~a~~~g~dkiRINPGN--------------ig~-------------------~e~v~~vv~~ 116 (346)
T TIGR00612 76 ----VADIHFD--YRLAALAMAKGVAKVRINPGN--------------IGF-------------------RERVRDVVEK 116 (346)
T ss_pred ----EEeeCCC--cHHHHHHHHhccCeEEECCCC--------------CCC-------------------HHHHHHHHHH
Confidence 2232222 233456788999999998881 211 5899999999
Q ss_pred HhHhceeEeccCCCCCCCccCCCcHHHHHHH--HHHHHHHH-------HHHhcC---CeEEeeCCCCCCCCchHHHHHHH
Q 005965 370 CNQYDVALSIGDGLRPGSIYDANDTAQFAEL--LTQGELTR-------RAWDKD---VQVMNEGPGHIPMHKIPENMQKQ 437 (667)
Q Consensus 370 ~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL--~~LGEL~k-------rA~e~g---VQVMIEGPGHVPl~~I~~Nv~lq 437 (667)
||+|++.+=+| .=.||+.. ..+++. -+---|++ ...+.| +-+-++- +=+...|++|-.+.
T Consensus 117 ak~~~ipIRIG--VN~GSL~~----~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~Ks--Sdv~~~i~ayr~la 188 (346)
T TIGR00612 117 ARDHGKAMRIG--VNHGSLER----RLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMKA--SDVAETVAAYRLLA 188 (346)
T ss_pred HHHCCCCEEEe--cCCCCCcH----HHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEc--CCHHHHHHHHHHHH
Confidence 99999998775 45566642 111111 01011333 333333 3344432 33456788888887
Q ss_pred HHhcCCCCccccCccccccCCCchhH---HHhHHHHHhhhcccceeeecCcccccCCCChhHHHHH
Q 005965 438 LEWCNEAPFYTLGPLTTDIAPGYDHI---TSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAG 500 (667)
Q Consensus 438 k~lC~~APfYvLGPLvTDIApGYDHI---tsAIGaA~aa~~GadfLCYVTPaEHLgLP~~eDVreG 500 (667)
++ |+ -||. ==||--+++++=+ +.+||..+.---|--+-.-+|.. | .++|+-|
T Consensus 189 ~~-~d-yPLH---lGVTEAG~~~~G~IKSaigig~LL~~GIGDTIRVSLT~d-----P-~~EV~va 243 (346)
T TIGR00612 189 ER-SD-YPLH---LGVTEAGMGVKGIVKSSAGIGILLARGIGDTIRVSLTDD-----P-THEVPVA 243 (346)
T ss_pred hh-CC-CCce---eccccCCCCCCchhHHHHHHHHHHhhCCCCeEEEECCCC-----c-HHHHHHH
Confidence 76 54 4443 3388888888864 56778888888898899988842 3 6666654
No 102
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=56.29 E-value=66 Score=28.82 Aligned_cols=112 Identities=15% Similarity=0.220 Sum_probs=65.4
Q ss_pred HHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCC--HHHHHHHHHHHHhcCCCEEEEecc
Q 005965 245 WATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLS--WEVFRDTLIEQAEQGVDYFTIHAG 322 (667)
Q Consensus 245 ~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt--~e~~~d~ieeQAeqGVDfmTIHaG 322 (667)
.-.++|..+|.+|....... ....+-.=.+|+... ...++. .+...+.|++..++|- =+-|||-
T Consensus 21 ~l~~~gi~~Vi~l~~~~~~~-------~~~~~~~~~ipi~D~------~~~~~~~~~~~~~~~i~~~~~~~~-~VlVHC~ 86 (138)
T smart00195 21 LLKKLGITHVINVTNEVPNL-------NKKGFTYLGVPILDN------TETKISPYFPEAVEFIEDAEKKGG-KVLVHCQ 86 (138)
T ss_pred HHHHcCCCEEEEccCCCCCC-------CCCCCEEEEEECCCC------CCCChHHHHHHHHHHHHHHhcCCC-eEEEECC
Confidence 34457999999997765421 123344445555541 112221 2444555666555664 3668993
Q ss_pred ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHH
Q 005965 323 VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLT 402 (667)
Q Consensus 323 v~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~ 402 (667)
.| +||.|++++.|++....- .+++-++..+ ..||+..-. ..|+..|..
T Consensus 87 ---------~G-----~~RS~~v~~~yl~~~~~~-----~~~~A~~~v~----------~~R~~~~p~---~~~~~qL~~ 134 (138)
T smart00195 87 ---------AG-----VSRSATLIIAYLMKYRNL-----SLNDAYDFVK----------DRRPIISPN---FGFLRQLIE 134 (138)
T ss_pred ---------CC-----CchHHHHHHHHHHHHhCC-----CHHHHHHHHH----------HHCCccCCC---HhHHHHHHH
Confidence 23 589999999998876553 3566666665 357655543 345555543
No 103
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=56.26 E-value=1.4e+02 Score=32.88 Aligned_cols=158 Identities=15% Similarity=0.139 Sum_probs=87.2
Q ss_pred HHHHHHHHHhCCcEeeecCC------CCC-------hHHHHHHHHhcCCCCcccchh--hh--HHHHhcCCCCCCCH---
Q 005965 240 VYKVQWATMWGADTVMDLST------GRH-------IHETREWILRNSAVPVGTVPI--YQ--ALEKVDGIAENLSW--- 299 (667)
Q Consensus 240 veKl~~A~~~GADtVMDLST------Ggd-------i~~~R~~Il~nspvPVGTVPI--Yq--Al~k~~g~~~~lt~--- 299 (667)
++.++.+-++|.|.|. +.. +.+ +.++|+. |+...+.|-.|-+ |. .+ + .|.+..-+.
T Consensus 35 ~e~i~~la~~GfdgVE-~~~~dl~P~~~~~~e~~~~~~~lk~~-L~~~GL~v~~v~~nl~~~~~~-~-~g~las~d~~vR 110 (382)
T TIGR02631 35 VEAVHKLAELGAYGVT-FHDDDLIPFGAPPQERDQIVRRFKKA-LDETGLKVPMVTTNLFSHPVF-K-DGGFTSNDRSVR 110 (382)
T ss_pred HHHHHHHHHhCCCEEE-ecccccCCCCCChhHHHHHHHHHHHH-HHHhCCeEEEeeccccCCccc-c-CCCCCCCCHHHH
Confidence 3566678899999995 442 222 2355555 5677776443322 11 11 1 233444444
Q ss_pred ----HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH--h
Q 005965 300 ----EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ--Y 373 (667)
Q Consensus 300 ----e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~--Y 373 (667)
+.+.+.|+--++-|...|++|.|......+....+ .-.-+|+ -+.+.+|++.+++ |
T Consensus 111 ~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~---------~~a~~~~---------~e~L~~lae~A~~~G~ 172 (382)
T TIGR02631 111 RYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDV---------RAALDRM---------REALNLLAAYAEDQGY 172 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCH---------HHHHHHH---------HHHHHHHHHHHHhhCC
Confidence 45667777788899999999999543222211110 0012223 3789999999998 5
Q ss_pred ceeEeccC---CCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC
Q 005965 374 DVALSIGD---GLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM 427 (667)
Q Consensus 374 DVtlSLGD---GLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl 427 (667)
+|+|.|=. =-|++.+ -++.+|..+++. .+.. ..-|.++++ .||+=|
T Consensus 173 GV~laLEp~p~~~~~~~l--l~T~~~al~li~---~v~~--pn~vgl~lD-vgH~~~ 221 (382)
T TIGR02631 173 GLRFALEPKPNEPRGDIL--LPTVGHALAFIE---TLER--PELFGLNPE-TGHEQM 221 (382)
T ss_pred CcEEEEccCCCCCCccee--cCCHHHHHHHHH---HcCC--ccceeEEEe-chhHhh
Confidence 89999943 3344444 344455555442 1111 111455554 488844
No 104
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=55.73 E-value=2.7e+02 Score=29.37 Aligned_cols=139 Identities=8% Similarity=0.028 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccc--cccccccC-------cccCc--cccccHHHHHHHHHcCC---cCch-hhh
Q 005965 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLL--RYIPLTAK-------RMTGI--VSRGGSIHAKWCLAYHK---ENFA-YEH 362 (667)
Q Consensus 298 t~e~~~d~ieeQAeqGVDfmTIHaGv~~--~~l~~~~~-------RvtgI--VSRGGSi~a~Wml~h~~---ENpL-Ye~ 362 (667)
+.+++.+.+++..++|...+-|+.|... +.+..... |+-.- =|.--...++++...+- |=|+ .+.
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~d~~~v~~vr~~~~~~~l~vDaN~~~~~~~a~~~~~l~~~~~~~iEeP~~~~~ 211 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKITPQIMHQLVKLRRLRFPQIPLVIDANESYDLQDFPRLKELDRYQLLYIEEPFKIDD 211 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeCCchhHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhCCCcEEECCCChhH
Confidence 5688889999999999999999876321 11111000 00000 01212334556655443 5555 357
Q ss_pred HHHHHHHHhHhceeEeccCCCC------CCCccCCCcHHH-----HHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchH
Q 005965 363 WDEILDICNQYDVALSIGDGLR------PGSIYDANDTAQ-----FAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIP 431 (667)
Q Consensus 363 FD~ileI~k~YDVtlSLGDGLR------PG~iaDA~D~AQ-----~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~ 431 (667)
++.+-++.+..++-+.+|..+. .---..+.|-.| +.-+...-+++..|.++|++||+- +|+ -.-|.
T Consensus 212 ~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~--~~~-es~i~ 288 (324)
T TIGR01928 212 LSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIG--GML-ETGIS 288 (324)
T ss_pred HHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEc--ceE-cccHH
Confidence 8889999999999999998652 110111222222 223334447788899999999975 333 33444
Q ss_pred HHHHHHHH
Q 005965 432 ENMQKQLE 439 (667)
Q Consensus 432 ~Nv~lqk~ 439 (667)
...-++.-
T Consensus 289 ~aa~~hla 296 (324)
T TIGR01928 289 RAFNVALA 296 (324)
T ss_pred HHHHHHHH
Confidence 44444443
No 105
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=55.55 E-value=1.3e+02 Score=32.97 Aligned_cols=129 Identities=12% Similarity=0.065 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHh-cCCCEEEEecccc--ccccc---cccCcccCc---cccccHH----HHHHHHHcCC-----cCch
Q 005965 298 SWEVFRDTLIEQAE-QGVDYFTIHAGVL--LRYIP---LTAKRMTGI---VSRGGSI----HAKWCLAYHK-----ENFA 359 (667)
Q Consensus 298 t~e~~~d~ieeQAe-qGVDfmTIHaGv~--~~~l~---~~~~RvtgI---VSRGGSi----~a~Wml~h~~-----ENpL 359 (667)
+.|++.+.+++..+ +|...|-|+.|.. .+-++ .....+-++ |==-++. -.+++..-.+ |=|+
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~~~~l~~~l~~iEeP~ 247 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRLAKELEGVLAYLEDPC 247 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHHHHhcCcCCCEEECCC
Confidence 67888887777764 6999999998752 11111 111111000 0000111 1112222222 5567
Q ss_pred hhhHHHHHHHHhHhceeEeccCCCCCCC-c-----cCCCcHHHHH-----HHHHHHHHHHHHHhcCCeEEeeCCCCCCC
Q 005965 360 YEHWDEILDICNQYDVALSIGDGLRPGS-I-----YDANDTAQFA-----ELLTQGELTRRAWDKDVQVMNEGPGHIPM 427 (667)
Q Consensus 360 Ye~FD~ileI~k~YDVtlSLGDGLRPG~-i-----aDA~D~AQ~~-----EL~~LGEL~krA~e~gVQVMIEGPGHVPl 427 (667)
. .++.+-++.++.++-|.+|.-+.-.- . .++-|-.|.. -+...-+++..|.++||++++-+.+|-++
T Consensus 248 ~-d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~e~~i 325 (395)
T cd03323 248 G-GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNNHLGI 325 (395)
T ss_pred C-CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCcccHH
Confidence 6 89999999999999999987653110 0 1122222211 12223377888999999999866655443
No 106
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=55.06 E-value=2.6e+02 Score=30.70 Aligned_cols=171 Identities=17% Similarity=0.076 Sum_probs=94.3
Q ss_pred CCCCChHHHHHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCC--------CCCCHHHH
Q 005965 231 AVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIA--------ENLSWEVF 302 (667)
Q Consensus 231 ~~~~~ieeEveKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~--------~~lt~e~~ 302 (667)
.+..++++.++.++.+++.|.|.|- ..+ .. + . .-| ...-+++.+..+.. .+. ..
T Consensus 10 lD~~~~~~~~~~~~~~~~~Gv~~ie-~g~--p~--~----~-----~~~-~~~i~~l~~~~~~~~ii~D~kl~d~-g~-- 71 (430)
T PRK07028 10 LDLLELDRAVEIAKEAVAGGADWIE-AGT--PL--I----K-----SEG-MNAIRTLRKNFPDHTIVADMKTMDT-GA-- 71 (430)
T ss_pred eccCCHHHHHHHHHHHHhcCCcEEE-eCC--HH--H----H-----Hhh-HHHHHHHHHHCCCCEEEEEeeeccc-hH--
Confidence 4667899999999999999999983 311 00 0 0 000 11112222221110 011 11
Q ss_pred HHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCC
Q 005965 303 RDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDG 382 (667)
Q Consensus 303 ~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDG 382 (667)
.-++.-++.|+|++++|..-. ..+..++++.++++++-+-+|
T Consensus 72 -~~v~~a~~aGAdgV~v~g~~~-----------------------------------~~~~~~~i~~a~~~G~~~~~g-- 113 (430)
T PRK07028 72 -IEVEMAAKAGADIVCILGLAD-----------------------------------DSTIEDAVRAARKYGVRLMAD-- 113 (430)
T ss_pred -HHHHHHHHcCCCEEEEecCCC-----------------------------------hHHHHHHHHHHHHcCCEEEEE--
Confidence 155666789999999995311 011567888899988766553
Q ss_pred CCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCC----CCCCchHHHHHHHHHhcCCCCccccCccccccCC
Q 005965 383 LRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGH----IPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAP 458 (667)
Q Consensus 383 LRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGH----VPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIAp 458 (667)
++. ..+. -+.++.|.+.|+....=+||+ .+. ...+.++..++.++ -|+++.|=+.+
T Consensus 114 ----~~s-~~t~---------~e~~~~a~~~GaD~I~~~pg~~~~~~~~-~~~~~l~~l~~~~~-iPI~a~GGI~~---- 173 (430)
T PRK07028 114 ----LIN-VPDP---------VKRAVELEELGVDYINVHVGIDQQMLGK-DPLELLKEVSEEVS-IPIAVAGGLDA---- 173 (430)
T ss_pred ----ecC-CCCH---------HHHHHHHHhcCCCEEEEEeccchhhcCC-ChHHHHHHHHhhCC-CcEEEECCCCH----
Confidence 111 1111 122477778899888878886 222 22245555555444 77777772211
Q ss_pred CchhHHHhHHHHHhhhcccceeeecCc
Q 005965 459 GYDHITSAIGAANIGALGTALLCYVTP 485 (667)
Q Consensus 459 GYDHItsAIGaA~aa~~GadfLCYVTP 485 (667)
+.+ .....+||+.+|..+-
T Consensus 174 --~n~------~~~l~aGAdgv~vGsa 192 (430)
T PRK07028 174 --ETA------AKAVAAGADIVIVGGN 192 (430)
T ss_pred --HHH------HHHHHcCCCEEEEChH
Confidence 222 2334568888887653
No 107
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=54.75 E-value=23 Score=36.14 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=39.0
Q ss_pred CCCCCChHHHHHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHH
Q 005965 230 SAVASSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQ 309 (667)
Q Consensus 230 S~~~~~ieeEveKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQ 309 (667)
.+...+.+.|+++|++=+++|||-++ |=|+|++ +.|++.+++-
T Consensus 140 hp~~~~~~~~~~~L~~Ki~aGA~f~i------------------------TQ~~fd~-------------~~~~~~~~~~ 182 (274)
T cd00537 140 HPEAPSLEEDIKRLKRKVDAGADFII------------------------TQLFFDN-------------DAFLRFVDRC 182 (274)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEe------------------------ecccccH-------------HHHHHHHHHH
Confidence 33444689999999999999999876 3344443 4555555555
Q ss_pred HhcCCCEEEEeccc
Q 005965 310 AEQGVDYFTIHAGV 323 (667)
Q Consensus 310 AeqGVDfmTIHaGv 323 (667)
.+.|++ +.|++||
T Consensus 183 ~~~gi~-vPIi~GI 195 (274)
T cd00537 183 RAAGIT-VPIIPGI 195 (274)
T ss_pred HHcCCC-CCEEeec
Confidence 667875 5678875
No 108
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=54.74 E-value=67 Score=33.79 Aligned_cols=148 Identities=17% Similarity=0.155 Sum_probs=78.3
Q ss_pred HHHHHHhCCcEeeecCCC----CChHHHHHHHH---hcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005965 243 VQWATMWGADTVMDLSTG----RHIHETREWIL---RNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVD 315 (667)
Q Consensus 243 l~~A~~~GADtVMDLSTG----gdi~~~R~~Il---~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVD 315 (667)
.++|..-|--||+|.-.. .+...++.++- +++-+.+| +|- + ++.+.-++.|.+..+.||.
T Consensus 30 t~aA~~GG~Ttv~~mpn~~p~~~~~~~~~~~~~~a~~~~~~d~~---~~~------~----~~~~~~~~el~~l~~~Gv~ 96 (337)
T cd01302 30 SRAAAAGGVTTVIDMPNTGPPPIDLPAIELKIKLAEESSYVDFS---FHA------G----IGPGDVTDELKKLFDAGIN 96 (337)
T ss_pred HHHHHhCCCcEEEECCCCCCCCCcHHHHHHHHHHhCcCcEeeEE---EEE------e----ccCccCHHHHHHHHHcCCc
Confidence 467888899999997322 12233322222 23333333 110 1 1111122445555678988
Q ss_pred EEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHH
Q 005965 316 YFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTA 395 (667)
Q Consensus 316 fmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~A 395 (667)
-|-+|..-. .+. .+.+ .-..++......+...-|+.-|=.+++++++++++.+-+-=- +.+
T Consensus 97 g~K~f~~~~-------~~~-~~~~-~~~~l~~~~~~~~~~g~~v~~H~Er~~~la~~~g~~l~i~Hi---------ss~- 157 (337)
T cd01302 97 SLKVFMNYY-------FGE-LFDV-DDGTLMRTFLEIASRGGPVMVHAERAAQLAEEAGANVHIAHV---------SSG- 157 (337)
T ss_pred EEEEEEecc-------CCC-cccc-CHHHHHHHHHHHHhcCCeEEEeHHHHHHHHHHhCCcEEEEeC---------CCH-
Confidence 888775321 000 0112 223444444444444456666666999999999887533111 011
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEee-CCCCCCCC
Q 005965 396 QFAELLTQGELTRRAWDKDVQVMNE-GPGHIPMH 428 (667)
Q Consensus 396 Q~~EL~~LGEL~krA~e~gVQVMIE-GPGHVPl~ 428 (667)
.--++++.|++.|++|-.| -|-|.=++
T Consensus 158 ------~~le~i~~ak~~g~~vt~ev~ph~L~l~ 185 (337)
T cd01302 158 ------EALELIKFAKNKGVKVTCEVCPHHLFLD 185 (337)
T ss_pred ------HHHHHHHHHHHCCCcEEEEcChhhheeC
Confidence 1125677889999999999 46655443
No 109
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=54.63 E-value=33 Score=37.18 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=27.2
Q ss_pred CcccCccccccHHHHHHHHHcCCcCchhhhHHHHHH
Q 005965 333 KRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILD 368 (667)
Q Consensus 333 ~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ile 368 (667)
-++.||+||+-.=..++-..++- |.|+.||++++
T Consensus 28 ~eLvaV~d~~~erA~~~A~~~gi--~~y~~~eell~ 61 (343)
T TIGR01761 28 FELAGILAQGSERSRALAHRLGV--PLYCEVEELPD 61 (343)
T ss_pred cEEEEEEcCCHHHHHHHHHHhCC--CccCCHHHHhc
Confidence 47999999998877667666654 59999999983
No 110
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=53.73 E-value=13 Score=35.91 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=13.9
Q ss_pred HHHHHHHhcCCeEEe
Q 005965 405 ELTRRAWDKDVQVMN 419 (667)
Q Consensus 405 EL~krA~e~gVQVMI 419 (667)
||.+|+|+.||+||-
T Consensus 108 eLk~rlr~~GIPvi~ 122 (136)
T COG1412 108 ELKRRLRENGIPVIT 122 (136)
T ss_pred HHHHHHHHcCCCEEE
Confidence 899999999999985
No 111
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=53.66 E-value=1.2e+02 Score=30.98 Aligned_cols=141 Identities=13% Similarity=0.077 Sum_probs=84.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccc-----cccCcccCcccc--------------ccHHHHHHHHHcCC
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIP-----LTAKRMTGIVSR--------------GGSIHAKWCLAYHK 355 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~-----~~~~RvtgIVSR--------------GGSi~a~Wml~h~~ 355 (667)
...+++.+.+..++|.++|.|++-|=++.++.... ....|+..+|.. ==.. ++=++.+..
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v-~~aaL~~g~ 97 (258)
T cd00423 19 KFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEV-AEAALKAGA 97 (258)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHH-HHHHHHhCC
Confidence 45789999999999999999999999998853321 011233333322 1111 222332221
Q ss_pred c--Cch-hhhH-HHHHHHHhHhceeEec----cCCCCCCCccCCCcHHHHHH--HHHHHHHHHHHHhcCC---eEEeeCC
Q 005965 356 E--NFA-YEHW-DEILDICNQYDVALSI----GDGLRPGSIYDANDTAQFAE--LLTQGELTRRAWDKDV---QVMNEGP 422 (667)
Q Consensus 356 E--NpL-Ye~F-D~ileI~k~YDVtlSL----GDGLRPG~iaDA~D~AQ~~E--L~~LGEL~krA~e~gV---QVMIEGP 422 (667)
. |-. .+.+ +++++++++|++.+=+ |++.+..+..+-.| ..| +..+-+++++|.++|| ++++ =|
T Consensus 98 ~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~Gi~~~~Iil-DP 173 (258)
T cd00423 98 DIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYAD---VVDEVVEFLEERVEAATEAGIPPEDIIL-DP 173 (258)
T ss_pred CEEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcch---HHHHHHHHHHHHHHHHHHcCCCHHHEEE-eC
Confidence 0 110 1122 8999999999875543 44554434322111 222 4567788999999996 4455 48
Q ss_pred CCCCCCchHHHHHHHHHh
Q 005965 423 GHIPMHKIPENMQKQLEW 440 (667)
Q Consensus 423 GHVPl~~I~~Nv~lqk~l 440 (667)
|.-|......|+.+-+.+
T Consensus 174 g~g~~k~~~~~~~~l~~i 191 (258)
T cd00423 174 GIGFGKTEEHNLELLRRL 191 (258)
T ss_pred CCCccCCHHHHHHHHHHH
Confidence 888887767776655544
No 112
>PLN02334 ribulose-phosphate 3-epimerase
Probab=53.13 E-value=39 Score=33.77 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=47.9
Q ss_pred CCCCCChHHHHHHHHHHHHhCCcE----eeecCCCCChH---HHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHH
Q 005965 230 SAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIH---ETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVF 302 (667)
Q Consensus 230 S~~~~~ieeEveKl~~A~~~GADt----VMDLSTGgdi~---~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~ 302 (667)
|-.+.+...-.+.++.++++|+|. +||.+.-.++. ++=++|-+.+..+++ |++. + .+++++
T Consensus 13 s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~-vhlm---------v--~~p~d~ 80 (229)
T PLN02334 13 SILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLD-CHLM---------V--TNPEDY 80 (229)
T ss_pred ehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEE-EEec---------c--CCHHHH
Confidence 333345444555677888999998 47776655555 455555555555542 3321 1 123444
Q ss_pred HHHHHHHHhcCCCEEEEecc
Q 005965 303 RDTLIEQAEQGVDYFTIHAG 322 (667)
Q Consensus 303 ~d~ieeQAeqGVDfmTIHaG 322 (667)
. ..-.+-|.|++|+|.|
T Consensus 81 ~---~~~~~~gad~v~vH~~ 97 (229)
T PLN02334 81 V---PDFAKAGASIFTFHIE 97 (229)
T ss_pred H---HHHHHcCCCEEEEeec
Confidence 4 4447789999999999
No 113
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=52.89 E-value=1.2e+02 Score=31.88 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccc
Q 005965 298 SWEVFRDTLIEQAEQGVDYFTIHAGV 323 (667)
Q Consensus 298 t~e~~~d~ieeQAeqGVDfmTIHaGv 323 (667)
+.+.+.+.+.+..++|.+.|-||+|-
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~ 164 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGG 164 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 78999999999999999999999984
No 114
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=52.88 E-value=2.3e+02 Score=30.62 Aligned_cols=203 Identities=18% Similarity=0.129 Sum_probs=92.9
Q ss_pred HHHHHHhCCcEeeecCCC----CChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhc--CCCE
Q 005965 243 VQWATMWGADTVMDLSTG----RHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQ--GVDY 316 (667)
Q Consensus 243 l~~A~~~GADtVMDLSTG----gdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeq--GVDf 316 (667)
...|+.-|.-||+|...| -+....+...+.+..- ++ + .......+|+.|-..+..-.+. +|||
T Consensus 72 ~~~a~~~GvTt~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (415)
T cd01297 72 LRPSSRQGVTTVVLGNCGVSPAPANPDDLARLIMLMEG--LV-----A----LGEGLPWGWATFAEYLDALEARPPAVNV 140 (415)
T ss_pred hhhHHhCcEEEEEeccccCccCCCChhhhhhhhhhhhc--cc-----c----cccccCCCCCCHHHHHHHHHhcCCCcCe
Confidence 456788899999986554 1111111112111100 11 1 1223346777665555544344 5887
Q ss_pred EE--EeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHh---HhceeEeccCCCCCCCccCC
Q 005965 317 FT--IHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICN---QYDVALSIGDGLRPGSIYDA 391 (667)
Q Consensus 317 mT--IHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k---~YDVtlSLGDGLRPG~iaDA 391 (667)
.. .|.+++....-. ++.++-=+..+++.++++ +..+ +++..++++-.- +.
T Consensus 141 ~~~~~h~~l~~~~~g~-----------------------~~~~~~~~~~~~~~~l~~~al~~Ga-~g~~~~~~y~~~-~~ 195 (415)
T cd01297 141 AALVGHAALRRAVMGL-----------------------DAREATEEELAKMRELLREALEAGA-LGISTGLAYAPR-LY 195 (415)
T ss_pred eeccCcHHHHHHHhCc-----------------------CCCCCCHHHHHHHHHHHHHHHHCCC-eEEEcccccCCc-cc
Confidence 64 787765432110 001122234556666653 4554 334444543110 12
Q ss_pred CcHHHHHHHHHHHHHHHHHHhcCCeEEe--eCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHH
Q 005965 392 NDTAQFAELLTQGELTRRAWDKDVQVMN--EGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGA 469 (667)
Q Consensus 392 ~D~AQ~~EL~~LGEL~krA~e~gVQVMI--EGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHItsAIGa 469 (667)
.|..++. ++.+.|+++|++|++ |+.+=.-+.-+++-+.+-++. ++|+|+ .=+.+--+.....+..++-.
T Consensus 196 ~~~~~l~------~~~~~a~~~g~~v~~H~e~~~~~e~~av~~~~~~a~~~--g~r~~i-~H~ss~~~~~~~~~~~~l~~ 266 (415)
T cd01297 196 AGTAELV------ALARVAARYGGVYQTHVRYEGDSILEALDELLRLGRET--GRPVHI-SHLKSAGAPNWGKIDRLLAL 266 (415)
T ss_pred CCHHHHH------HHHHHHHHcCCEEEEEECcccccHHHHHHHHHHHHHHh--CCCEEE-EEEecCCCcccchHHHHHHH
Confidence 2333333 334557777877765 333212222333333444442 566654 22222111111222222332
Q ss_pred H-HhhhcccceeeecCcccccCC
Q 005965 470 A-NIGALGTALLCYVTPKEHLGL 491 (667)
Q Consensus 470 A-~aa~~GadfLCYVTPaEHLgL 491 (667)
. -+...|.++.|-++| -||.+
T Consensus 267 i~~a~~~G~~v~~e~~p-~~~~~ 288 (415)
T cd01297 267 IEAARAEGLQVTADVYP-YGAGS 288 (415)
T ss_pred HHHHHHhCCcEEEEeCC-CCCCc
Confidence 2 233458899999999 67777
No 115
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=52.86 E-value=95 Score=32.36 Aligned_cols=158 Identities=13% Similarity=0.020 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeE
Q 005965 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVAL 377 (667)
Q Consensus 298 t~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtl 377 (667)
+.+.++++-++-.+.|+.|+ +.++.+ +|-.+- | -.-|--+.+..|-++|+++++.+
T Consensus 37 ~~~~~~~~A~~lk~~~~k~~-------r~~~~K--pRtsp~-s--------------~~g~g~~gl~~l~~~~~~~Gl~~ 92 (260)
T TIGR01361 37 SEEQIMETARFVKEAGAKIL-------RGGAFK--PRTSPY-S--------------FQGLGEEGLKLLRRAADEHGLPV 92 (260)
T ss_pred CHHHHHHHHHHHHHHHHHhc-------cCceec--CCCCCc-c--------------ccccHHHHHHHHHHHHHHhCCCE
Confidence 46777777777777777633 233332 343320 1 12233677888999999999876
Q ss_pred eccCCCCCCCccCCCcHHHHHHHH-------------HHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHH------
Q 005965 378 SIGDGLRPGSIYDANDTAQFAELL-------------TQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQL------ 438 (667)
Q Consensus 378 SLGDGLRPG~iaDA~D~AQ~~EL~-------------~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk------ 438 (667)
. .+..|..|+.+|. +.-.|.+.+-+.|..|+++=+=+.-+++|..-++.-+
T Consensus 93 ~----------t~~~d~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~ 162 (260)
T TIGR01361 93 V----------TEVMDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGN 162 (260)
T ss_pred E----------EeeCChhhHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 4 3666666666663 3447888899999999999887777888877776654
Q ss_pred -HhcC-CCCcc-ccCcccc------------ccCCCc--hhHHH-----hHHHHHhhhcccc---eeeecCccccc
Q 005965 439 -EWCN-EAPFY-TLGPLTT------------DIAPGY--DHITS-----AIGAANIGALGTA---LLCYVTPKEHL 489 (667)
Q Consensus 439 -~lC~-~APfY-vLGPLvT------------DIApGY--DHIts-----AIGaA~aa~~Gad---fLCYVTPaEHL 489 (667)
-+|+ |..-| --.++.- +.--|| ||..+ ..=+-.|..+||+ +=.-.||...+
T Consensus 163 i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d~a~ 238 (260)
T TIGR01361 163 VILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDPEKAL 238 (260)
T ss_pred EEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCccccC
Confidence 3566 45444 3333332 334466 67544 2112234567888 33455666655
No 116
>cd01306 PhnM PhnM is believed to be a subunit of the membrane associated C-P lyase complex. C-P lyase is thought to catalyze the direct cleavage of inactivated C-P bonds to yield inorganic phosphate and the corresponding hydrocarbons. It is responsible for cleavage of alkylphosphonates, which are utilized as sole phosphorus sources by many bacteria.
Probab=52.71 E-value=17 Score=39.01 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHhcC-CCEEEEeccccccccccc-----cCcccCcc-cccc---HHHHHHHHHc--CCcCchhhhH
Q 005965 296 NLSWEVFRDTLIEQAEQG-VDYFTIHAGVLLRYIPLT-----AKRMTGIV-SRGG---SIHAKWCLAY--HKENFAYEHW 363 (667)
Q Consensus 296 ~lt~e~~~d~ieeQAeqG-VDfmTIHaGv~~~~l~~~-----~~RvtgIV-SRGG---Si~a~Wml~h--~~ENpLYe~F 363 (667)
+++-.+.++.+++-..++ |+++.+ .+|.|-. ..++..-. -+.| .=+..++..- .++....++.
T Consensus 91 E~~~~~~~~~~~~~~~~~~v~lvs~-----~dH~pg~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (325)
T cd01306 91 ELADPAVLPELESLMADPRVHLVSL-----MDHTPGQRQFRDLEKYREYYAKKYGLSDEEVEEAILERKARAAAYAPANR 165 (325)
T ss_pred eecCccHHHHHHHHhcCCCcCEEEE-----eCCCCccccccCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhhcCHHHH
Confidence 345566677777777665 888765 2333311 01222222 2222 1222332221 2222226899
Q ss_pred HHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHH----------HHHHHHHhcCCeEEe
Q 005965 364 DEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQG----------ELTRRAWDKDVQVMN 419 (667)
Q Consensus 364 D~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LG----------EL~krA~e~gVQVMI 419 (667)
..|++.++++++.+. ++|......+.+...+| +.++.++++|+.|+.
T Consensus 166 ~~iv~~A~~~gl~va---------sH~d~~~~~v~~a~~~Gv~~~E~p~t~e~a~~a~~~G~~vv~ 222 (325)
T cd01306 166 SELAALARARGIPLA---------SHDDDTPEHVAEAHELGVVISEFPTTLEAAKAARELGLQTLM 222 (325)
T ss_pred HHHHHHHHHCCCcEE---------EecCCChHHHHHHHHCCCeeccCCCCHHHHHHHHHCCCEEEe
Confidence 999999999988664 34444445666666653 788999999999993
No 117
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=52.19 E-value=1.2e+02 Score=30.09 Aligned_cols=140 Identities=15% Similarity=0.160 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccc----------c---cc--CcccCccccccHHHHHHHHHcCC----
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIP----------L---TA--KRMTGIVSRGGSIHAKWCLAYHK---- 355 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~----------~---~~--~RvtgIVSRGGSi~a~Wml~h~~---- 355 (667)
..++.++.++.+..-.+.|||++-+=-+.....+| . .. -|+..++ |.|.-.++-...++-
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~-~~~~~~i~~a~~~g~~~i~ 92 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALV-RNREKGIERALEAGVDEVR 92 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEc-cCchhhHHHHHhCCcCEEE
Confidence 56799999999999999999999887776652222 1 11 2444444 443222333333321
Q ss_pred ------cCchhh--------hHHHHHHH---HhHh--ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe
Q 005965 356 ------ENFAYE--------HWDEILDI---CNQY--DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ 416 (667)
Q Consensus 356 ------ENpLYe--------~FD~ileI---~k~Y--DVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQ 416 (667)
++..+. +||.+++. ++++ .|.+++-|..|| ..+.. .+-++++++.+.|+.
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-----~~~~~------~l~~~~~~~~~~g~~ 161 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC-----KTDPE------YVLEVAKALEEAGAD 161 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC-----CCCHH------HHHHHHHHHHHcCCC
Confidence 111111 46666554 4554 566777788887 33332 355677888888884
Q ss_pred -EEeeC-CCCCCCCchHHHHHHHHHhcCCCCc
Q 005965 417 -VMNEG-PGHIPMHKIPENMQKQLEWCNEAPF 446 (667)
Q Consensus 417 -VMIEG-PGHVPl~~I~~Nv~lqk~lC~~APf 446 (667)
+.+-- -|..--.++..-+..-++.+.+.|+
T Consensus 162 ~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~ 193 (265)
T cd03174 162 EISLKDTVGLATPEEVAELVKALREALPDVPL 193 (265)
T ss_pred EEEechhcCCcCHHHHHHHHHHHHHhCCCCeE
Confidence 34432 3788888899888888887776554
No 118
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.15 E-value=28 Score=37.11 Aligned_cols=63 Identities=24% Similarity=0.226 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 005965 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (667)
Q Consensus 241 eKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIH 320 (667)
+-+..|+++|||.|| | ..-+..++|+.+-..- +.+| ++-.||. | .+.|++-|+-||||+.+=
T Consensus 205 eea~ea~~~gaDiI~-L-Dn~s~e~l~~av~~~~----~~~~----leaSGGI----~----~~ni~~yA~tGVD~Is~G 266 (281)
T PRK06106 205 DQLEEALELGVDAVL-L-DNMTPDTLREAVAIVA----GRAI----TEASGRI----T----PETAPAIAASGVDLISVG 266 (281)
T ss_pred HHHHHHHHcCCCEEE-e-CCCCHHHHHHHHHHhC----CCce----EEEECCC----C----HHHHHHHHhcCCCEEEeC
Confidence 345567899999999 4 3447788887765321 3344 2323333 2 367888899999999764
Q ss_pred c
Q 005965 321 A 321 (667)
Q Consensus 321 a 321 (667)
+
T Consensus 267 a 267 (281)
T PRK06106 267 W 267 (281)
T ss_pred h
Confidence 4
No 119
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=51.38 E-value=79 Score=36.02 Aligned_cols=92 Identities=21% Similarity=0.227 Sum_probs=61.2
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCcEe---eecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHh--cCCC
Q 005965 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV---MDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKV--DGIA 294 (667)
Q Consensus 220 ~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADtV---MDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~--~g~~ 294 (667)
.+||.+.|- ..+.++-+..+..+...|+|-| +|+....+..+.-..+++..++ |+-=.+... ||.
T Consensus 22 ~~~icv~i~----~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~~~~~-----plI~T~R~~~eGG~- 91 (529)
T PLN02520 22 PTLICVPIM----ADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQSPL-----PTLVTYRPKWEGGQ- 91 (529)
T ss_pred CCEEEEEeC----CCCHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHhcCCC-----cEEEEeccHHHCCC-
Confidence 446666652 2236666677888888899999 9988764333333456665444 443333321 444
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEec
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHA 321 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHa 321 (667)
-..++++.++.++.-++.|+||+-|=-
T Consensus 92 ~~~~~~~~~~ll~~~~~~~~d~iDiEl 118 (529)
T PLN02520 92 YEGDENKRQDALRLAMELGADYVDVEL 118 (529)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEEc
Confidence 578999999999988999999998853
No 120
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=51.29 E-value=92 Score=33.04 Aligned_cols=84 Identities=14% Similarity=0.166 Sum_probs=42.8
Q ss_pred eeccccCCCCCChHHHHHHHHHHHHhCCcEee-ecC--------CCCChHH----HHHHHHhcCCCCcccchhhhHHHHh
Q 005965 224 NANIGNSAVASSIEEEVYKVQWATMWGADTVM-DLS--------TGRHIHE----TREWILRNSAVPVGTVPIYQALEKV 290 (667)
Q Consensus 224 NANIGtS~~~~~ieeEveKl~~A~~~GADtVM-DLS--------TGgdi~~----~R~~Il~nspvPVGTVPIYqAl~k~ 290 (667)
-+||+- .+.++-++=++.+.++|||.|. .+| .|.+..+ +=++|-+++++ |+. .|.
T Consensus 105 i~sI~g----~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~i-----PV~---vKl 172 (334)
T PRK07565 105 IASLNG----SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSI-----PVA---VKL 172 (334)
T ss_pred EEEecc----CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCC-----cEE---EEe
Confidence 346643 2344545566667788999884 233 2333322 22344444433 332 121
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCEEEEecccc
Q 005965 291 DGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVL 324 (667)
Q Consensus 291 ~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~ 324 (667)
.. + ++++.+....-.+.|||++++|-.+.
T Consensus 173 ~p---~--~~~~~~~a~~l~~~G~dgI~~~n~~~ 201 (334)
T PRK07565 173 SP---Y--FSNLANMAKRLDAAGADGLVLFNRFY 201 (334)
T ss_pred CC---C--chhHHHHHHHHHHcCCCeEEEECCcC
Confidence 11 1 12333444433467999999997754
No 121
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=50.72 E-value=14 Score=38.76 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=31.1
Q ss_pred hHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEecc
Q 005965 263 IHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (667)
Q Consensus 263 i~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaG 322 (667)
+.++=+.+.++.++|| ||-| +.+ .+-+.+++++.+..-.+.||+++|||+=
T Consensus 110 ~~~iv~~~~~~~~~pv-svKi-----R~g---~~~~~~~~~~~~~~l~~~G~~~i~vH~R 160 (309)
T PF01207_consen 110 LAEIVKAVRKAVPIPV-SVKI-----RLG---WDDSPEETIEFARILEDAGVSAITVHGR 160 (309)
T ss_dssp HHHHHHHHHHH-SSEE-EEEE-----ESE---CT--CHHHHHHHHHHHHTT--EEEEECS
T ss_pred hhHHHHhhhcccccce-EEec-----ccc---cccchhHHHHHHHHhhhcccceEEEecC
Confidence 3445555666667666 4544 221 1234577889999999999999999995
No 122
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=50.57 E-value=1.3e+02 Score=30.73 Aligned_cols=164 Identities=14% Similarity=0.198 Sum_probs=85.8
Q ss_pred CCChHHHHHHHHHHHHhCCcEe-ee------cCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCC-CCCCH-HHH-
Q 005965 233 ASSIEEEVYKVQWATMWGADTV-MD------LSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIA-ENLSW-EVF- 302 (667)
Q Consensus 233 ~~~ieeEveKl~~A~~~GADtV-MD------LSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~-~~lt~-e~~- 302 (667)
..+++.=.+-++...++|||.| +| +-.|.-|...=.+-|++-.-.--...+...+.+....+ .=|+- ..+
T Consensus 10 ~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~ 89 (242)
T cd04724 10 DPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPIL 89 (242)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHH
Confidence 3455554555777788899997 56 56676666655444444321112222333332211111 11111 221
Q ss_pred ----HHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEe
Q 005965 303 ----RDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALS 378 (667)
Q Consensus 303 ----~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlS 378 (667)
-+.+++-++.|+|.+++|- . | |++++++++.|++|++...
T Consensus 90 ~~G~~~fi~~~~~aG~~giiipD----------------------------------l-~-~ee~~~~~~~~~~~g~~~i 133 (242)
T cd04724 90 QYGLERFLRDAKEAGVDGLIIPD----------------------------------L-P-PEEAEEFREAAKEYGLDLI 133 (242)
T ss_pred HhCHHHHHHHHHHCCCcEEEECC----------------------------------C-C-HHHHHHHHHHHHHcCCcEE
Confidence 2335666778999999981 0 1 3688899999999875443
Q ss_pred ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcC-CeEEeeCCCC---CC-CCchHHHHHHHHHhcCCCCccc
Q 005965 379 IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKD-VQVMNEGPGH---IP-MHKIPENMQKQLEWCNEAPFYT 448 (667)
Q Consensus 379 LGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~g-VQVMIEGPGH---VP-l~~I~~Nv~lqk~lC~~APfYv 448 (667)
+ -+...+....+.++.. . ..| |-+|--.||. .+ ...+.+.++.-++++ +.|..+
T Consensus 134 ~-------~i~P~T~~~~i~~i~~------~--~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~-~~pI~v 192 (242)
T cd04724 134 F-------LVAPTTPDERIKKIAE------L--ASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYT-DLPIAV 192 (242)
T ss_pred E-------EeCCCCCHHHHHHHHh------h--CCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcC-CCcEEE
Confidence 3 1556666554444322 1 222 4555434443 21 344556666666654 455544
No 123
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=50.51 E-value=1.2e+02 Score=30.21 Aligned_cols=78 Identities=12% Similarity=0.119 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHhHhcee---EeccCCCCCCCccCCCcHHHHHHH-HHHHHHHHHHHhcCCeEEeeC--CC-CCCCCchHH
Q 005965 360 YEHWDEILDICNQYDVA---LSIGDGLRPGSIYDANDTAQFAEL-LTQGELTRRAWDKDVQVMNEG--PG-HIPMHKIPE 432 (667)
Q Consensus 360 Ye~FD~ileI~k~YDVt---lSLGDGLRPG~iaDA~D~AQ~~EL-~~LGEL~krA~e~gVQVMIEG--PG-HVPl~~I~~ 432 (667)
.++|++.+++|++..+. +..| .+|...+ +..+++.+ ..|-+|++.|.++||++-+|- |. ...++-..+
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~---~~~~~~~--~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~~~~t~~~ 163 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAA---HAGYLTP--PNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNAND 163 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCC---CCCCCCC--HHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCcccccCCHHH
Confidence 68899999999998654 3333 3343332 23333333 367899999999999999994 21 234667788
Q ss_pred HHHHHHHhcC
Q 005965 433 NMQKQLEWCN 442 (667)
Q Consensus 433 Nv~lqk~lC~ 442 (667)
-+++-+.+.+
T Consensus 164 ~~~l~~~~~~ 173 (275)
T PRK09856 164 VLHALALVPS 173 (275)
T ss_pred HHHHHHHcCC
Confidence 8888877654
No 124
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=50.04 E-value=28 Score=38.02 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecc------cccc-------cccc-cc---CcccCcccc--ccH-HHHHHHHHcCCc-
Q 005965 298 SWEVFRDTLIEQAEQGVDYFTIHAG------VLLR-------YIPL-TA---KRMTGIVSR--GGS-IHAKWCLAYHKE- 356 (667)
Q Consensus 298 t~e~~~d~ieeQAeqGVDfmTIHaG------v~~~-------~l~~-~~---~RvtgIVSR--GGS-i~a~Wml~h~~E- 356 (667)
++.++.+.|.+-++.|.|.+++|.. .... .+.. .+ =++..+... .+. +...-+...+++
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~las~d~~v 109 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGGFTSNDRSV 109 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCCCCCCCHHH
Confidence 5668889999999999999999943 2210 1111 11 121121110 000 000001111111
Q ss_pred -CchhhhHHHHHHHHhHhce-eEeccCCCCCCCccC-CCc-HHHHH-HHHHHHHHHHHHHhc--CCeEEeeC-CC----C
Q 005965 357 -NFAYEHWDEILDICNQYDV-ALSIGDGLRPGSIYD-AND-TAQFA-ELLTQGELTRRAWDK--DVQVMNEG-PG----H 424 (667)
Q Consensus 357 -NpLYe~FD~ileI~k~YDV-tlSLGDGLRPG~iaD-A~D-~AQ~~-EL~~LGEL~krA~e~--gVQVMIEG-PG----H 424 (667)
---.+++.+-+++|++.+. ++++=-| |.|.-.| ..| +.++. -...|.+|++.|.++ ||++.||= |. +
T Consensus 110 R~~ai~~~kraId~A~eLGa~~v~v~~G-~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~p~~~~~~ 188 (382)
T TIGR02631 110 RRYALRKVLRNMDLGAELGAETYVVWGG-REGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEPKPNEPRGD 188 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEccC-CCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCCCCCcc
Confidence 1225678889999999988 3555444 3343333 233 22333 345679999999997 69999996 33 3
Q ss_pred CCCCchHHHHHHHHHh
Q 005965 425 IPMHKIPENMQKQLEW 440 (667)
Q Consensus 425 VPl~~I~~Nv~lqk~l 440 (667)
.-++.+..-+.+.+++
T Consensus 189 ~ll~T~~~al~li~~v 204 (382)
T TIGR02631 189 ILLPTVGHALAFIETL 204 (382)
T ss_pred eecCCHHHHHHHHHHc
Confidence 4577777766666665
No 125
>PRK09237 dihydroorotase; Provisional
Probab=50.00 E-value=25 Score=37.10 Aligned_cols=167 Identities=11% Similarity=0.064 Sum_probs=81.9
Q ss_pred HHHHHhCCcEeeecCC--CCChHHHHHHHHhcCCCCc-------ccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 005965 244 QWATMWGADTVMDLST--GRHIHETREWILRNSAVPV-------GTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (667)
Q Consensus 244 ~~A~~~GADtVMDLST--Ggdi~~~R~~Il~nspvPV-------GTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGV 314 (667)
+.|+..|.-||+|..+ ..+++.+++.+.+.+.+|+ +.+|+-... -.....++.+++.+.+.+.- +||
T Consensus 75 ~~~~~~G~Ttv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~v 150 (380)
T PRK09237 75 EVGVRSGVTTVVDAGSAGADNFDDFRKLTIEASKTRVLAFLNISRIGLLAQDE---LADLEDIDADAVAEAVKRNP-DFI 150 (380)
T ss_pred HHHHhCCcCEEEECCCCCCCCHHHHHHHHHhhhCcEEEEEEeeecccccccch---hcCHhHCCHHHHHHHHHhCc-CcE
Confidence 4689999999999653 3477888888887654432 344442111 11234467777777666421 233
Q ss_pred CEEEEecccccccccc---ccCcccCcccc-ccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccC
Q 005965 315 DYFTIHAGVLLRYIPL---TAKRMTGIVSR-GGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYD 390 (667)
Q Consensus 315 DfmTIHaGv~~~~l~~---~~~RvtgIVSR-GGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaD 390 (667)
--+-. .+.....+. ...++..++.+ -| .++.- |.+|+. ...++|++++++-++..=.-.|--...+.|
T Consensus 151 ~glk~--~~~~~v~~~~~~~~~~~~~~~a~~~g----~~v~~-H~~~~~-~~~~~l~~~l~~g~~~~H~~~~~~~~~~~~ 222 (380)
T PRK09237 151 VGIKA--RMSSSVVGDNGIEPLELAKAIAAEAN----LPLMV-HIGNPP-PSLEEILELLRPGDILTHCFNGKPNRILDE 222 (380)
T ss_pred EEEEE--EEecccccccCCchHHHHHHHHHhcC----CCEEE-EcCCCC-CCHHHHHhhccCCCEEEecCCCCCCCccCC
Confidence 21111 111111110 11111111110 00 01111 333332 456777777665444333333322233444
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCeEEe-eCCCCCCCCchH
Q 005965 391 ANDTAQFAELLTQGELTRRAWDKDVQVMN-EGPGHIPMHKIP 431 (667)
Q Consensus 391 A~D~AQ~~EL~~LGEL~krA~e~gVQVMI-EGPGHVPl~~I~ 431 (667)
--+..+.++.+.+.|+.+++ +|.++.++..+.
T Consensus 223 ---------~~~~~~~a~~~l~~G~~~~ig~g~~~~~~~~~~ 255 (380)
T PRK09237 223 ---------DGELRPSVLEALERGVRLDVGHGTASFSFKVAE 255 (380)
T ss_pred ---------CCcchHHHHHHHHCCEEEEecCCCCcccHHHHH
Confidence 11233556667778999998 466677775553
No 126
>cd01305 archeal_chlorohydrolases Predicted chlorohydrolases. These metallo-dependent hydrolases from archea are part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. They have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. Some members of this subgroup are predicted to be chlorohyrolases.
Probab=49.96 E-value=2.8e+02 Score=27.78 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhH----HHHHHHHhHhceeE
Q 005965 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHW----DEILDICNQYDVAL 377 (667)
Q Consensus 302 ~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~F----D~ileI~k~YDVtl 377 (667)
+...++.-.+.|+ .+++||+=..... |.. -..|++..+. ....|- |+.++++++.++.+
T Consensus 127 l~~~~~~A~~~g~-~v~~H~~e~~~~~-------------g~~-~i~~~~~~~~--~~i~H~~~l~~~~~~~la~~g~~v 189 (263)
T cd01305 127 LEDILELLRRRGK-LFAIHASETRESV-------------GMT-DIERALDLEP--DLLVHGTHLTDEDLELVRENGVPV 189 (263)
T ss_pred HHHHHHHHHHCCC-eeEEecCCCCCCC-------------Cch-hHHHHHhCCC--CEEEEcCCCCHHHHHHHHHcCCcE
Confidence 7777777777788 7789997543311 111 1223333311 122332 67899999999998
Q ss_pred ec--------cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEee--CCCCCCCCchHHHHHHHHHhcC
Q 005965 378 SI--------GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNE--GPGHIPMHKIPENMQKQLEWCN 442 (667)
Q Consensus 378 SL--------GDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIE--GPGHVPl~~I~~Nv~lqk~lC~ 442 (667)
+. |.|+-| +++.+++||.|-+= ++..-+.+.+ ..|++....++
T Consensus 190 ~~~P~sn~~l~~g~~p---------------------~~~l~~~Gv~v~lGtD~~~~~~~~~~-~~~~~~~~~~~ 242 (263)
T cd01305 190 VLCPRSNLYFGVGIPP---------------------VAELLKLGIKVLLGTDNVMVNEPDMW-AEMEFLAKYSR 242 (263)
T ss_pred EEChhhHHHhCCCCCC---------------------HHHHHHCCCcEEEECCCCccCCCCHH-HHHHHHHHHhc
Confidence 84 444322 57888999999983 2334455544 35555544444
No 127
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=49.76 E-value=1.1e+02 Score=34.91 Aligned_cols=78 Identities=23% Similarity=0.308 Sum_probs=45.7
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCcEe-eecCCCCChH--HHHHHHHhcCC-CCc--ccchhhhHHHHhcCC
Q 005965 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTGRHIH--ETREWILRNSA-VPV--GTVPIYQALEKVDGI 293 (667)
Q Consensus 220 ~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADtV-MDLSTGgdi~--~~R~~Il~nsp-vPV--GTVPIYqAl~k~~g~ 293 (667)
+.-|-+-+|++. ++++.++..+++|+|.| +|.+.|.... +.=++|-+..| ++| |+|-
T Consensus 229 rL~Vgaavg~~~------~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~----------- 291 (495)
T PTZ00314 229 QLLVGAAISTRP------EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVV----------- 291 (495)
T ss_pred CEEEEEEECCCH------HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcC-----------
Confidence 444666676654 45788888999999998 4887663332 22333444332 333 3343
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEE--ecc
Q 005965 294 AENLSWEVFRDTLIEQAEQGVDYFTI--HAG 322 (667)
Q Consensus 294 ~~~lt~e~~~d~ieeQAeqGVDfmTI--HaG 322 (667)
|.++..+. .+.|+||+-+ +.|
T Consensus 292 ----t~~~a~~~----~~aGad~I~vg~g~G 314 (495)
T PTZ00314 292 ----TADQAKNL----IDAGADGLRIGMGSG 314 (495)
T ss_pred ----CHHHHHHH----HHcCCCEEEECCcCC
Confidence 33443333 3689999864 554
No 128
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=49.71 E-value=41 Score=35.65 Aligned_cols=156 Identities=17% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHhCCcEeeec-------CCCCChHHHHHHHHhcC---CCCcccchhhh---HHHHhcCCCCC------------CC
Q 005965 244 QWATMWGADTVMDL-------STGRHIHETREWILRNS---AVPVGTVPIYQ---ALEKVDGIAEN------------LS 298 (667)
Q Consensus 244 ~~A~~~GADtVMDL-------STGgdi~~~R~~Il~ns---pvPVGTVPIYq---Al~k~~g~~~~------------lt 298 (667)
+.|..-|.-||+|. ++-..+.+.++++-+++ -.+.|.+.... .++....-... ++
T Consensus 39 ~aA~~GGvTtii~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~G~~~~k~~~~~~~~ 118 (374)
T cd01317 39 KAAAAGGFTTVVCMPNTNPVIDNPAVVELLKNRAKDVGIVRVLPIGALTKGLKGEELTEIGELLEAGAVGFSDDGKPIQD 118 (374)
T ss_pred HHHHhCCCcEEEECCCCCCCCCCHHHHHHHHHHhccCCceeEEEEEEEeeCCCcccHHHHHHHHHCCcEEEEcCCcCCCC
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEe
Q 005965 299 WEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALS 378 (667)
Q Consensus 299 ~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlS 378 (667)
.+.+++.++.-++.|. .+.+|| -+.+.+. .-+-+.|.+-...-.+...+.--.....++++++++|++.+-
T Consensus 119 ~~~l~~~~~~~~~~g~-~v~~H~-E~~~~~~-------~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~~la~~~~~~i~ 189 (374)
T cd01317 119 AELLRRALEYAAMLDL-PIIVHP-EDPSLAG-------GGVMNEGKVASRLGLPGIPPEAETIMVARDLELAEATGARVH 189 (374)
T ss_pred HHHHHHHHHHHHhcCC-eEEEec-CChhhhh-------ccCccCChhhHHhCCCCCCHHHHHHHHHHHHHHHHHhCCcEE
Q ss_pred ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCC
Q 005965 379 IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGH 424 (667)
Q Consensus 379 LGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGH 424 (667)
+.=--=+.++ ++++.|++.|+++-.|=.-|
T Consensus 190 i~h~ss~~~l----------------~~i~~~~~~G~~~~~e~~~h 219 (374)
T cd01317 190 FQHLSTARSL----------------ELIRKAKAKGLPVTAEVTPH 219 (374)
T ss_pred EEeCCCHHHH----------------HHHHHHHHCCCCEEEEecHH
No 129
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=49.09 E-value=55 Score=33.50 Aligned_cols=76 Identities=18% Similarity=0.187 Sum_probs=51.0
Q ss_pred CChHHHHHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 005965 234 SSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (667)
Q Consensus 234 ~~ieeEveKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqG 313 (667)
.++++=++.++.+.++|||.||=-. -.+.+++++ +.+..+.|+=-.+ . -++. .++.++|. +-|
T Consensus 157 ~~~~eai~Ra~ay~~AGAD~v~v~~-~~~~~~~~~-~~~~~~~Pl~~~~---~---~~~~--~~~~~~l~-------~lG 219 (243)
T cd00377 157 EGLDEAIERAKAYAEAGADGIFVEG-LKDPEEIRA-FAEAPDVPLNVNM---T---PGGN--LLTVAELA-------ELG 219 (243)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCC-CCCHHHHHH-HHhcCCCCEEEEe---c---CCCC--CCCHHHHH-------HCC
Confidence 4789999999999999999999543 236666655 4566667664321 0 0111 35666554 559
Q ss_pred CCEEEEecccccc
Q 005965 314 VDYFTIHAGVLLR 326 (667)
Q Consensus 314 VDfmTIHaGv~~~ 326 (667)
|.+++++....+.
T Consensus 220 ~~~v~~~~~~~~~ 232 (243)
T cd00377 220 VRRVSYGLALLRA 232 (243)
T ss_pred CeEEEEChHHHHH
Confidence 9999998865443
No 130
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=48.83 E-value=2.8e+02 Score=27.42 Aligned_cols=167 Identities=20% Similarity=0.165 Sum_probs=109.9
Q ss_pred hHHHHHH-HHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 005965 236 IEEEVYK-VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (667)
Q Consensus 236 ieeEveK-l~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGV 314 (667)
=.+++++ ++.|.++|.|+|+- + -+-+...|+.+ +++++-+.+|- +-..-..+.+.....+++-+++|+
T Consensus 15 t~~~i~~~~~~a~~~~~~av~v-~-p~~v~~~~~~l-~~~~~~v~~~~--------~fp~g~~~~~~k~~eve~A~~~GA 83 (203)
T cd00959 15 TEEDIRKLCDEAKEYGFAAVCV-N-PCFVPLAREAL-KGSGVKVCTVI--------GFPLGATTTEVKVAEAREAIADGA 83 (203)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE-c-HHHHHHHHHHc-CCCCcEEEEEE--------ecCCCCCcHHHHHHHHHHHHHcCC
Confidence 4566666 56778899999993 2 33555555544 56777777761 112223566777888999999999
Q ss_pred CEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeE--eccCCCCCCCccCCC
Q 005965 315 DYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVAL--SIGDGLRPGSIYDAN 392 (667)
Q Consensus 315 DfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtl--SLGDGLRPG~iaDA~ 392 (667)
|-+-++.-+. + +..+.++-.++..-++.+.|. ++.| .+..+.- +
T Consensus 84 devdvv~~~g------------------------~-~~~~~~~~~~~ei~~v~~~~~--g~~lkvI~e~~~l-------~ 129 (203)
T cd00959 84 DEIDMVINIG------------------------A-LKSGDYEAVYEEIAAVVEACG--GAPLKVILETGLL-------T 129 (203)
T ss_pred CEEEEeecHH------------------------H-HhCCCHHHHHHHHHHHHHhcC--CCeEEEEEecCCC-------C
Confidence 9998887541 1 122344556666777777775 4443 5555543 1
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcC-CCCccccCcccc
Q 005965 393 DTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCN-EAPFYTLGPLTT 454 (667)
Q Consensus 393 D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~-~APfYvLGPLvT 454 (667)
| ..+...++.|-+.|.-.+==+.|=.|-.-=.+++++.++.+. ..|+.+-|-.-|
T Consensus 130 ~-------~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~v~ik~aGGikt 185 (203)
T cd00959 130 D-------EEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGRVGVKAAGGIRT 185 (203)
T ss_pred H-------HHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEEeCCCCC
Confidence 1 135667888999999988777776665555667777777775 467888876553
No 131
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=48.74 E-value=1.2e+02 Score=31.44 Aligned_cols=121 Identities=10% Similarity=0.114 Sum_probs=71.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccc--cccCcccCccccc-----------cHHHHHHHHHc--C-----
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIP--LTAKRMTGIVSRG-----------GSIHAKWCLAY--H----- 354 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~--~~~~RvtgIVSRG-----------GSi~a~Wml~h--~----- 354 (667)
.+-+.+...+..++|.++|.|++.|=++.. .++ ..-.|+..+|..- -..+ .=.+.+ +
T Consensus 21 ~~~~~d~~~~~A~~~~~~GAdiIDIG~~~~--~~~~~ee~~r~v~~i~~~~~~piSIDT~~~~v~-e~aL~~~~G~~iIN 97 (252)
T cd00740 21 KAEDYDEALDVARQQVEGGAQILDLNVDYG--GLDGVSAMKWLLNLLATEPTVPLMLDSTNWEVI-EAGLKCCQGKCVVN 97 (252)
T ss_pred HcCCHHHHHHHHHHHHHCCCCEEEECCCCC--CCCHHHHHHHHHHHHHHhcCCcEEeeCCcHHHH-HHHHhhCCCCcEEE
Confidence 446779999999999999999999988754 222 1224554444311 1122 223332 1
Q ss_pred CcCchh--hhHHHHHHHHhHhceeEecc----CCCCCCCccCCCcHHHHHHHHHHHHHHHHHH-hcCC---eEEeeCCCC
Q 005965 355 KENFAY--EHWDEILDICNQYDVALSIG----DGLRPGSIYDANDTAQFAELLTQGELTRRAW-DKDV---QVMNEGPGH 424 (667)
Q Consensus 355 ~ENpLY--e~FD~ileI~k~YDVtlSLG----DGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~-e~gV---QVMIEGPGH 424 (667)
-=|-+. +.++.+++++++|++.+=+= .| .|- +..+ -+..+-++.+++. +.|| ++++- ||.
T Consensus 98 sIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g-~p~---t~~~-----~~~~~~~~~~~~~~~~gi~~~~IiiD-Pgi 167 (252)
T cd00740 98 SINLEDGEERFLKVARLAKEHGAAVVVLAFDEQG-QAK---TRDK-----KVEIAERAYEALTEFVGFPPEDIIFD-PLI 167 (252)
T ss_pred eCCCCCCccccHHHHHHHHHhCCCEEEeccCCCC-CCC---CHHH-----HHHHHHHHHHHHHHHcCCCHHHEEEe-CCc
Confidence 112222 56899999999997655441 22 132 2211 2456666777776 4577 77774 666
Q ss_pred CCCC
Q 005965 425 IPMH 428 (667)
Q Consensus 425 VPl~ 428 (667)
-|..
T Consensus 168 g~~~ 171 (252)
T cd00740 168 LPIA 171 (252)
T ss_pred cccc
Confidence 6655
No 132
>PRK06886 hypothetical protein; Validated
Probab=48.46 E-value=1.5e+02 Score=32.06 Aligned_cols=96 Identities=20% Similarity=0.235 Sum_probs=58.5
Q ss_pred ccchhhhHHHHhcCCCCCCCHHHHHH----HHHHHHhcCCCEEEEecccc----ccccc-------cccCcc--------
Q 005965 279 GTVPIYQALEKVDGIAENLSWEVFRD----TLIEQAEQGVDYFTIHAGVL----LRYIP-------LTAKRM-------- 335 (667)
Q Consensus 279 GTVPIYqAl~k~~g~~~~lt~e~~~d----~ieeQAeqGVDfmTIHaGv~----~~~l~-------~~~~Rv-------- 335 (667)
|| ++++++.....-..+|.+++.+ .|+.+..+|+-+|--|+-|. +..++ ...+|+
T Consensus 46 g~--l~e~i~~~~~~k~~~t~~dv~~Ra~~~l~~~~~~Gtt~iRtHvdvd~~~~l~~~~a~~~~r~~~~~~idlq~vafP 123 (329)
T PRK06886 46 AN--LQQKWDLVDEVKRNSTVEDYYARFSQAIELMISQGVTAFGTFVDIDPICEDRAIIAAHKAREVYKHDIILKFANQT 123 (329)
T ss_pred CC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHcCcccEeeeeccCCCccccHHHHHHHHHHHhcCcceEEEEecC
Confidence 55 6777664433335667777665 78889999999999999662 22222 112333
Q ss_pred -cCccccccHHHHHHHHHc-----------CC-cCc---hhhhHHHHHHHHhHhceeEec
Q 005965 336 -TGIVSRGGSIHAKWCLAY-----------HK-ENF---AYEHWDEILDICNQYDVALSI 379 (667)
Q Consensus 336 -tgIVSRGGSi~a~Wml~h-----------~~-ENp---LYe~FD~ileI~k~YDVtlSL 379 (667)
-|+.+.+| .+||..- .. |.. -=++++.+++++++||+-+.+
T Consensus 124 q~g~~~~~~---~~l~~~al~~advvGGiP~~~~~~~~~~~e~l~~~~~lA~~~g~~Id~ 180 (329)
T PRK06886 124 LKGVIEPTA---KKWFDIGSEMVDMIGGLPYRDELDYGRGLEAMDILLDTAKSLGKMVHV 180 (329)
T ss_pred hhhccCccH---HHHHHHHHHhCCEEeCccCCcCCCCCCCHHHHHHHHHHHHHcCCCeEE
Confidence 46776666 3666442 11 111 125688888888888865554
No 133
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=48.37 E-value=42 Score=34.24 Aligned_cols=120 Identities=22% Similarity=0.171 Sum_probs=82.6
Q ss_pred CCceeEeeccccCCCCCChHHHHHHHHHHHHhCCcE---eeecCC--CCChHHHHHHHHhcCCCCcccchhhhHHHHhcC
Q 005965 218 NFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADT---VMDLST--GRHIHETREWILRNSAVPVGTVPIYQALEKVDG 292 (667)
Q Consensus 218 gl~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADt---VMDLST--Ggdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g 292 (667)
+-.+||.+=||-.-.....+.-+.-.+.|++.|||- |+++|- .+|++.++++|-.-...- + |+ +-|+-=
T Consensus 55 ~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~-~--~~---~lKvIl 128 (221)
T PRK00507 55 GSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAA-G--GA---VLKVII 128 (221)
T ss_pred CCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhc-C--Cc---eEEEEe
Confidence 345888888877666777777788889999999975 567663 257999999887554421 1 21 122211
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEeccc-----ccccccc---ccCcccCcccccc
Q 005965 293 IAENLSWEVFRDTLIEQAEQGVDYFTIHAGV-----LLRYIPL---TAKRMTGIVSRGG 343 (667)
Q Consensus 293 ~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv-----~~~~l~~---~~~RvtgIVSRGG 343 (667)
..-+||.+++.+..+--.+-|+||+-.=.|. +.+.+.+ ..+.-+||..-||
T Consensus 129 Et~~L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~~~~~IKasGG 187 (221)
T PRK00507 129 ETCLLTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETVGPRVGVKASGG 187 (221)
T ss_pred ecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEeeCC
Confidence 2468999999999999999999999886654 4555553 2244467777776
No 134
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=48.04 E-value=3.1e+02 Score=27.72 Aligned_cols=78 Identities=21% Similarity=0.218 Sum_probs=48.6
Q ss_pred CChHHHHHHHHHHHHhCCcEeeecCCC---CChHHHHHHHHhcCCC----CcccchhhhHHHHhcCCCCCCCHHHHHHHH
Q 005965 234 SSIEEEVYKVQWATMWGADTVMDLSTG---RHIHETREWILRNSAV----PVGTVPIYQALEKVDGIAENLSWEVFRDTL 306 (667)
Q Consensus 234 ~~ieeEveKl~~A~~~GADtVMDLSTG---gdi~~~R~~Il~nspv----PVGTVPIYqAl~k~~g~~~~lt~e~~~d~i 306 (667)
.+++.=++.+..+.+.|..||.|.++. .+....++- .+.+++ .+|--|.+..- ......+.+.+.+.+
T Consensus 29 ~~~~~~~~~~~~~~~~Gvttiv~~~~~~~~~~~~~~~~~-~~~~g~~v~~~~G~hp~~~~~----~~~~~~~~~~l~~~~ 103 (293)
T cd00530 29 ADVEAAKEELKRFRAHGGRTIVDATPPGIGRDVEKLAEV-ARATGVNIVAATGFYKDAFYP----EWVRLRSVEELTDML 103 (293)
T ss_pred hhHHHHHHHHHHHHHcCCCeEEEcCCcccCcCHHHHHHH-HHHhCCcEEEecccCCCccCh----HHHhhCCHHHHHHHH
Confidence 356666677888999999999999973 467776654 444443 34544433110 001234556777777
Q ss_pred HHHHhcCCCE
Q 005965 307 IEQAEQGVDY 316 (667)
Q Consensus 307 eeQAeqGVDf 316 (667)
++...+|++-
T Consensus 104 ~~~l~~~~~~ 113 (293)
T cd00530 104 IREIEEGIEG 113 (293)
T ss_pred HHHHHhcccc
Confidence 7777777763
No 135
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=47.32 E-value=13 Score=39.09 Aligned_cols=123 Identities=20% Similarity=0.230 Sum_probs=62.7
Q ss_pred HHHHHHHHHhCCcEee-ecCC---CCChHHHHHHH--HhcCCCC----cccchhhhHHHHhcC-CCCCCCHHHHHHHHHH
Q 005965 240 VYKVQWATMWGADTVM-DLST---GRHIHETREWI--LRNSAVP----VGTVPIYQALEKVDG-IAENLSWEVFRDTLIE 308 (667)
Q Consensus 240 veKl~~A~~~GADtVM-DLST---Ggdi~~~R~~I--l~nspvP----VGTVPIYqAl~k~~g-~~~~lt~e~~~d~iee 308 (667)
++.++.|++.|.+.|| |-|. -.++..+|+-+ .+...++ +|+++ .+- ....| ...-=+.|+..+.++
T Consensus 87 ~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~g-g~e-d~~~g~~~~~t~~eea~~f~~- 163 (282)
T TIGR01859 87 YESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLG-GIE-DGVDEKEAELADPDEAEQFVK- 163 (282)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCc-Ccc-ccccccccccCCHHHHHHHHH-
Confidence 5688899999999998 3333 23333343322 1111221 23433 000 00000 001115555544443
Q ss_pred HHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec--cCCCCCC
Q 005965 309 QAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI--GDGLRPG 386 (667)
Q Consensus 309 QAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSL--GDGLRPG 386 (667)
+.||||+++=.|-.-..- ++ .|-+ .||.|=+|+++.++-|-+ |+|+-
T Consensus 164 --~tgvD~Lavs~Gt~hg~~-------~~-------------------~~~l-~~e~L~~i~~~~~iPlv~hGgSGi~-- 212 (282)
T TIGR01859 164 --ETGVDYLAAAIGTSHGKY-------KG-------------------EPGL-DFERLKEIKELTNIPLVLHGASGIP-- 212 (282)
T ss_pred --HHCcCEEeeccCcccccc-------CC-------------------CCcc-CHHHHHHHHHHhCCCEEEECCCCCC--
Confidence 359999997655321110 00 1222 388888888888887665 56763
Q ss_pred CccCCCcHHHHHHHHHH
Q 005965 387 SIYDANDTAQFAELLTQ 403 (667)
Q Consensus 387 ~iaDA~D~AQ~~EL~~L 403 (667)
..++.+++..
T Consensus 213 -------~e~i~~~i~~ 222 (282)
T TIGR01859 213 -------EEQIKKAIKL 222 (282)
T ss_pred -------HHHHHHHHHc
Confidence 3456666554
No 136
>PRK01207 methionine synthase; Provisional
Probab=47.18 E-value=17 Score=39.70 Aligned_cols=90 Identities=23% Similarity=0.252 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCCCEEEEeccc-cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 005965 301 VFRDTLIEQAEQGVDYFTIHAGV-LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (667)
Q Consensus 301 ~~~d~ieeQAeqGVDfmTIHaGv-~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSL 379 (667)
....+|..|-+.|+|++|+|=++ +-+.+.....++-|+...| |.. .||..| |---+=.
T Consensus 38 ai~~~v~~Qe~aGlDiv~~dGe~~R~dmv~~f~~~l~G~~~~g------~vr----------~y~~~~-----~r~Pii~ 96 (343)
T PRK01207 38 ATLETLDVFENAGLDNIGIGGEMFRWEMYEHPAERIKGIIFYG------MVR----------SFDNRY-----YRKGSII 96 (343)
T ss_pred HHHHHHHHHHHcCCCEEeeCCcEeechHHHHHHHhcCCeEecC------eEE----------Eecccc-----ccCCeEE
Confidence 46688999999999999999999 4455666788999987632 321 122211 3333444
Q ss_pred cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCC
Q 005965 380 GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGP 422 (667)
Q Consensus 380 GDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGP 422 (667)
||==|++. --+.|+.-.-+|++ +.|++|+-||
T Consensus 97 g~i~~~~~-------~~v~e~~~a~~~t~----kpvK~~ltGP 128 (343)
T PRK01207 97 DRMERRSS-------FHLDEVEFVADNTK----KPIKVPITGP 128 (343)
T ss_pred eeccCCCC-------CcHHHHHHHHHccC----CCcEEEecCH
Confidence 55444332 23455555555544 8999999997
No 137
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=46.36 E-value=24 Score=42.12 Aligned_cols=110 Identities=19% Similarity=0.195 Sum_probs=77.8
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCEEEEecccc----c--cccccccCcccCccccccHHHHHHHHHcCCcCchhhhH-
Q 005965 291 DGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVL----L--RYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHW- 363 (667)
Q Consensus 291 ~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~----~--~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~F- 363 (667)
||+.--|+. .++.+++.-...|...+.||-|.. - +.++++...+-+|-++||++| -..+-+|+-+.+
T Consensus 9 GGdapGmNa-aIravv~~a~~~g~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~L-----GtsR~~~~~~~~~ 82 (745)
T TIGR02478 9 GGDAQGMNA-AVRAVVRMAIYVGCRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGTII-----GTARCKEFRERPG 82 (745)
T ss_pred CCCcHHHHH-HHHHHHHHHHHCCCEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCcee-----cCCCCCcccCHHH
Confidence 444444443 345666666678999999999862 2 456677789999999999975 566777765544
Q ss_pred -HHHHHHHhHhcee--Eec-cCCCCCCCccCCCcHHH---------HHHHHHHHHHHHHHHhcC
Q 005965 364 -DEILDICNQYDVA--LSI-GDGLRPGSIYDANDTAQ---------FAELLTQGELTRRAWDKD 414 (667)
Q Consensus 364 -D~ileI~k~YDVt--lSL-GDGLRPG~iaDA~D~AQ---------~~EL~~LGEL~krA~e~g 414 (667)
+++++.+++|++. +-+ || |+.+.|+ ++||..-|++++.+.+.+
T Consensus 83 ~~~~~~~L~~~~Id~LivIGGd--------gS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~ 138 (745)
T TIGR02478 83 RLKAARNLIKRGIDNLVVIGGD--------GSLTGADLFREEWPSLLEELVDTGKITAEQAEEH 138 (745)
T ss_pred HHHHHHHHHHhCCCEEEEECCh--------hHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcC
Confidence 8999999999874 344 44 3444554 578888888888888864
No 138
>PRK07094 biotin synthase; Provisional
Probab=45.99 E-value=2.9e+02 Score=28.73 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccc
Q 005965 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGV 323 (667)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDfmTIHaGv 323 (667)
.++.|++.+.+++..+.||..+.+..|-
T Consensus 69 ~ls~eei~~~~~~~~~~g~~~i~l~gG~ 96 (323)
T PRK07094 69 RLSPEEILECAKKAYELGYRTIVLQSGE 96 (323)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 4799999999999889999999998774
No 139
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=45.68 E-value=1.3e+02 Score=31.90 Aligned_cols=130 Identities=18% Similarity=0.186 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccc---cccc---ccc--ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHH
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGV---LLRY---IPL--TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEI 366 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv---~~~~---l~~--~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~i 366 (667)
.+|+.|++++.+++ -|+-.++|+-|= ..+. ++. ..+..+.|++-| .++.+ ..+++
T Consensus 57 ~~ls~ee~~~~i~e---~g~~~V~i~GGEPLL~pdl~eiv~~~~~~g~~v~l~TNG-~ll~~-------------~~~~l 119 (318)
T TIGR03470 57 QRLSVEECLRAVDE---CGAPVVSIPGGEPLLHPEIDEIVRGLVARKKFVYLCTNA-LLLEK-------------KLDKF 119 (318)
T ss_pred cCCCHHHHHHHHHH---cCCCEEEEeCccccccccHHHHHHHHHHcCCeEEEecCc-eehHH-------------HHHHH
Confidence 46899999888775 488888887662 2221 111 123445566654 22211 12222
Q ss_pred HHHHhHhceeEeccCCCCCCCccCCCcH--HHHHHHHHHHHHHHHHHhcCCeEEeeC---CCCCCCCchHHHHHHHHHhc
Q 005965 367 LDICNQYDVALSIGDGLRPGSIYDANDT--AQFAELLTQGELTRRAWDKDVQVMNEG---PGHIPMHKIPENMQKQLEWC 441 (667)
Q Consensus 367 leI~k~YDVtlSLGDGLRPG~iaDA~D~--AQ~~EL~~LGEL~krA~e~gVQVMIEG---PGHVPl~~I~~Nv~lqk~lC 441 (667)
.+ ..-..|.+|| ||++ ..+|..-. --|+. .-+-.+.+.++|++|.|.= ++ .-+++|.+-+++-+++
T Consensus 120 ~~-~~~~~i~VSL-DG~~--e~hd~~~~~~g~f~~---~l~~I~~l~~~G~~v~v~~tv~~~-~n~~ei~~~~~~~~~l- 190 (318)
T TIGR03470 120 EP-SPYLTFSVHL-DGLR--EHHDASVCREGVFDR---AVEAIREAKARGFRVTTNTTLFND-TDPEEVAEFFDYLTDL- 190 (318)
T ss_pred Hh-CCCcEEEEEE-ecCc--hhhchhhcCCCcHHH---HHHHHHHHHHCCCcEEEEEEEeCC-CCHHHHHHHHHHHHHc-
Confidence 11 0112377888 8864 56665311 11332 2355566677888776531 22 3456777777776664
Q ss_pred CCCCccccCc
Q 005965 442 NEAPFYTLGP 451 (667)
Q Consensus 442 ~~APfYvLGP 451 (667)
|.-.+.+-|
T Consensus 191 -Gv~~i~i~p 199 (318)
T TIGR03470 191 -GVDGMTISP 199 (318)
T ss_pred -CCCEEEEec
Confidence 444444443
No 140
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=45.13 E-value=83 Score=32.40 Aligned_cols=100 Identities=21% Similarity=0.251 Sum_probs=66.6
Q ss_pred HHHHH-HHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCE
Q 005965 238 EEVYK-VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDY 316 (667)
Q Consensus 238 eEveK-l~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDf 316 (667)
+++.. .+.|.+.|||-|-- |..+++..+|+++ +.++ +|++-+ |.+..=|++++++.+.+-.+.|.+-
T Consensus 160 ~~i~~a~~~a~e~GAD~vKt-~~~~~~~~l~~~~-~~~~-----ipV~a~-----GGi~~~~~~~~l~~v~~~~~aGA~G 227 (267)
T PRK07226 160 EVVAHAARVAAELGADIVKT-NYTGDPESFREVV-EGCP-----VPVVIA-----GGPKTDTDREFLEMVRDAMEAGAAG 227 (267)
T ss_pred HHHHHHHHHHHHHCCCEEee-CCCCCHHHHHHHH-HhCC-----CCEEEE-----eCCCCCCHHHHHHHHHHHHHcCCcE
Confidence 45555 48899999999964 4556888887665 4444 555433 4434447899999999999999995
Q ss_pred EEEeccccccccc-cccCcccCccccccHHHHHH
Q 005965 317 FTIHAGVLLRYIP-LTAKRMTGIVSRGGSIHAKW 349 (667)
Q Consensus 317 mTIHaGv~~~~l~-~~~~RvtgIVSRGGSi~a~W 349 (667)
+.+=-.|...-=| ....++..+|.+|.|.=.+|
T Consensus 228 is~gr~i~~~~~p~~~~~~l~~~v~~~~~~~ea~ 261 (267)
T PRK07226 228 VAVGRNVFQHEDPEAITRAISAVVHEGASVEEAL 261 (267)
T ss_pred EehhhhhhcCCCHHHHHHHHHHHHhCCCCHHHHH
Confidence 4433333222112 24477888888887776665
No 141
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=44.70 E-value=1.9e+02 Score=32.55 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=45.3
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCcEeeecCC-CC--ChHHHHHHHHhcC-CCC--cccchhhhHHHHhcCC
Q 005965 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLST-GR--HIHETREWILRNS-AVP--VGTVPIYQALEKVDGI 293 (667)
Q Consensus 220 ~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADtVMDLST-Gg--di~~~R~~Il~ns-pvP--VGTVPIYqAl~k~~g~ 293 (667)
+.+|-++||++++. ++.++.-+++|+|.|.=-++ |. ++-+..++|.+.. ++| +|+|=
T Consensus 216 ~l~V~aai~~~~~~------~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~----------- 278 (486)
T PRK05567 216 RLRVGAAVGVGADN------EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVA----------- 278 (486)
T ss_pred CEEEEeecccCcch------HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccC-----------
Confidence 56788899887532 56666777789997753333 32 3445566776665 455 34433
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEE
Q 005965 294 AENLSWEVFRDTLIEQAEQGVDYFTI 319 (667)
Q Consensus 294 ~~~lt~e~~~d~ieeQAeqGVDfmTI 319 (667)
|.++..+.+ +.|+|++-+
T Consensus 279 ----t~e~a~~l~----~aGad~i~v 296 (486)
T PRK05567 279 ----TAEAARALI----EAGADAVKV 296 (486)
T ss_pred ----CHHHHHHHH----HcCCCEEEE
Confidence 444443333 569999864
No 142
>PRK06354 pyruvate kinase; Provisional
Probab=44.69 E-value=1.3e+02 Score=35.36 Aligned_cols=97 Identities=22% Similarity=0.250 Sum_probs=60.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecccccccccc-------ccCcccCccccccHHHHHHHHHcCCcCc-hhhhHHH
Q 005965 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPL-------TAKRMTGIVSRGGSIHAKWCLAYHKENF-AYEHWDE 365 (667)
Q Consensus 294 ~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~-------~~~RvtgIVSRGGSi~a~Wml~h~~ENp-LYe~FD~ 365 (667)
...||+.|..| |.--+++||||+.+=.==+.+.+.. ..++-+.|+++ =|++ -.+++|+
T Consensus 173 ~p~ltekD~~d-i~f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~iiaK-------------IEt~eav~nlde 238 (590)
T PRK06354 173 LPAITEKDRED-LIFGLEQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPIIAK-------------IEKQEAIDNIDA 238 (590)
T ss_pred CCCCCHHHHHH-HHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEEEE-------------ECCHHHHHhHHH
Confidence 45688999888 6777899999998765323332321 11222233321 2332 3677888
Q ss_pred HHHHH-----hHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 005965 366 ILDIC-----NQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (667)
Q Consensus 366 ileI~-----k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (667)
|++.+ .+.|..+++| -..+.+ .+-++++.|+++|+.|++
T Consensus 239 I~~~~DgImVaRGDLgve~g-------------~e~v~~--~qk~ii~~~~~~gkpvI~ 282 (590)
T PRK06354 239 ILELCDGLMVARGDLGVEIP-------------AEEVPL--LQKRLIKKANRLGKPVIT 282 (590)
T ss_pred HHHhcCEEEEccchhhcccC-------------cHHHHH--HHHHHHHHHHHcCCCEEE
Confidence 88773 3566666776 223333 567899999999999986
No 143
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=44.56 E-value=2.4e+02 Score=28.30 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec--
Q 005965 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI-- 379 (667)
Q Consensus 302 ~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSL-- 379 (667)
|-++|++-++.|.|.+=|.. |+...-+++.+.+++|++.+|.
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~------------------------------------~~~~~~~~~~~~l~~~gl~~~~~~ 60 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMF------------------------------------PYDYDIEELKQVLASNKLEHTLHN 60 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcC------------------------------------CCCCCHHHHHHHHHHcCCcEEEEc
Confidence 55677778888888887710 1223588999999999999984
Q ss_pred -c-CCCCCCC----ccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCC
Q 005965 380 -G-DGLRPGS----IYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIP 426 (667)
Q Consensus 380 -G-DGLRPG~----iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVP 426 (667)
+ .++.+++ ..++ +.++.. ..+-+..+.|.+.|+.+++=-+|..|
T Consensus 61 ~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~i~~a~~lga~~i~~~~g~~~ 110 (258)
T PRK09997 61 LPAGDWAAGERGIACIPG-REEEFR--DGVAAAIRYARALGNKKINCLVGKTP 110 (258)
T ss_pred CCCCccccCcCccccCCC-cHHHHH--HHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 1 1223332 3333 444433 34568889999999997765556544
No 144
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=44.44 E-value=1.6e+02 Score=29.23 Aligned_cols=64 Identities=9% Similarity=-0.072 Sum_probs=42.1
Q ss_pred hHHHHHHHHhHhceeEecc-CCC------CCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC
Q 005965 362 HWDEILDICNQYDVALSIG-DGL------RPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM 427 (667)
Q Consensus 362 ~FD~ileI~k~YDVtlSLG-DGL------RPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl 427 (667)
..++|.+.+++|+++++.- ..+ +.|...+..+...+. ..+-+..+.|.+.|+.++.=.+|..|-
T Consensus 40 ~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~a~~lg~~~i~~~~g~~~~ 110 (254)
T TIGR03234 40 DAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFR--EGVALAIAYARALGCPQVNCLAGKRPA 110 (254)
T ss_pred CHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHH--HHHHHHHHHHHHhCCCEEEECcCCCCC
Confidence 5799999999999998743 111 222222333333332 245578899999999988777887653
No 145
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.42 E-value=46 Score=35.87 Aligned_cols=64 Identities=31% Similarity=0.379 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Q 005965 240 VYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (667)
Q Consensus 240 veKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTI 319 (667)
++-+..|+++|||.|| | ..-+.+++++.+-..- +.+. ++-.||. | .++|.+-|+-||||+.+
T Consensus 215 leea~eA~~aGaDiIm-L-Dnmspe~l~~av~~~~----~~~~----lEaSGGI----t----~~ni~~yA~tGVD~IS~ 276 (294)
T PRK06978 215 LAQLETALAHGAQSVL-L-DNFTLDMMREAVRVTA----GRAV----LEVSGGV----N----FDTVRAFAETGVDRISI 276 (294)
T ss_pred HHHHHHHHHcCCCEEE-E-CCCCHHHHHHHHHhhc----CCeE----EEEECCC----C----HHHHHHHHhcCCCEEEe
Confidence 4567778999999999 4 4457888888764221 2221 2222332 2 47888999999999976
Q ss_pred ec
Q 005965 320 HA 321 (667)
Q Consensus 320 Ha 321 (667)
=+
T Consensus 277 ga 278 (294)
T PRK06978 277 GA 278 (294)
T ss_pred Cc
Confidence 44
No 146
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=44.35 E-value=91 Score=33.19 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEecc
Q 005965 300 EVFRDTLIEQAEQGVDYFTIHAG 322 (667)
Q Consensus 300 e~~~d~ieeQAeqGVDfmTIHaG 322 (667)
+++.+.+..-.+.|+|++|||+.
T Consensus 149 ~~~~~~a~~le~~G~d~i~vh~r 171 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQALTIHGR 171 (321)
T ss_pred chHHHHHHHHHHhCCCEEEEecC
Confidence 34555555556789999999974
No 147
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=44.25 E-value=1.8e+02 Score=29.06 Aligned_cols=91 Identities=12% Similarity=0.029 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHH-HHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHH
Q 005965 360 YEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAEL-LTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQL 438 (667)
Q Consensus 360 Ye~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL-~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk 438 (667)
.++|.+++++|++.++..=.--|.+.. .... +...+.++ ..|.+|+++|.++||.+.+|--+.-=++....-.++.+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~~-~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~l~~ 170 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLAGYDVY-YEEK-SEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTPFMNSISKWKKWDK 170 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcccc-cccc-cHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCccccCCHHHHHHHHH
Confidence 578999999999988765332222211 1111 23344443 45788999999999999999832222566677777777
Q ss_pred HhcCCCCccccCccccccC
Q 005965 439 EWCNEAPFYTLGPLTTDIA 457 (667)
Q Consensus 439 ~lC~~APfYvLGPLvTDIA 457 (667)
.+- .|. +| +.=|++
T Consensus 171 ~v~--~~~--~~-~~~D~~ 184 (284)
T PRK13210 171 EID--SPW--LT-VYPDVG 184 (284)
T ss_pred HcC--CCc--ee-EEecCC
Confidence 763 363 44 455665
No 148
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=43.70 E-value=1e+02 Score=30.16 Aligned_cols=59 Identities=12% Similarity=0.001 Sum_probs=32.8
Q ss_pred HHHHhcCCCEEEEecccccccccc------ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh
Q 005965 307 IEQAEQGVDYFTIHAGVLLRYIPL------TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY 373 (667)
Q Consensus 307 eeQAeqGVDfmTIHaGv~~~~l~~------~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~Y 373 (667)
+.-++.|+|++|+|+-...+.+.. ..+.-.|++- .+- .-....++-+++|.++.++.+-
T Consensus 74 ~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~-------~~~-~~~~~~~~~~~~~~v~~m~~e~ 138 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVV-------EMS-HPGALEFIQPHADKLAKLAQEA 138 (215)
T ss_pred HHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEE-------eCC-CCCCCCCHHHHHHHHHHHHHHh
Confidence 556678999999999764343331 2244555543 110 0011123335678888877764
No 149
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=43.69 E-value=1.5e+02 Score=31.48 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccc
Q 005965 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGV 323 (667)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDfmTIHaGv 323 (667)
.++.++..+.+..-.+.||||+.||.|-
T Consensus 237 g~~~~e~~~ia~~Le~~gvd~iev~~g~ 264 (336)
T cd02932 237 GWDLEDSVELAKALKELGVDLIDVSSGG 264 (336)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 3567888887777777899999999873
No 150
>PRK08185 hypothetical protein; Provisional
Probab=43.39 E-value=29 Score=36.89 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhCCcEee----ecCCCCChHHHHHHH
Q 005965 239 EVYKVQWATMWGADTVM----DLSTGRHIHETREWI 270 (667)
Q Consensus 239 EveKl~~A~~~GADtVM----DLSTGgdi~~~R~~I 270 (667)
.++.++.|++.|.++|| +|+.-.||..+|+-+
T Consensus 80 ~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv 115 (283)
T PRK08185 80 TIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVV 115 (283)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 35667889999999999 566666777777654
No 151
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=43.39 E-value=1.6e+02 Score=29.96 Aligned_cols=59 Identities=19% Similarity=0.197 Sum_probs=39.1
Q ss_pred Cchhhh-HHHHHHHHhHhcee-EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe-eCCCCCCCCchHH
Q 005965 357 NFAYEH-WDEILDICNQYDVA-LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN-EGPGHIPMHKIPE 432 (667)
Q Consensus 357 NpLYe~-FD~ileI~k~YDVt-lSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMI-EGPGHVPl~~I~~ 432 (667)
||+|++ +++.++-|++..+. +.+- |.. ++ .+.++.+.++++|+...+ =.| +.|.+.|+.
T Consensus 86 n~~~~~G~~~fi~~~~~aG~~giiip---------Dl~----~e---e~~~~~~~~~~~g~~~i~~i~P-~T~~~~i~~ 147 (242)
T cd04724 86 NPILQYGLERFLRDAKEAGVDGLIIP---------DLP----PE---EAEEFREAAKEYGLDLIFLVAP-TTPDERIKK 147 (242)
T ss_pred CHHHHhCHHHHHHHHHHCCCcEEEEC---------CCC----HH---HHHHHHHHHHHcCCcEEEEeCC-CCCHHHHHH
Confidence 888877 89999999998774 4443 332 22 567888899999986654 333 345554443
No 152
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=43.32 E-value=2.9e+02 Score=30.88 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccc--cccCCC
Q 005965 402 TQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLT--TDIAPG 459 (667)
Q Consensus 402 ~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLv--TDIApG 459 (667)
.+-++.+.|.+.||.|+-+|-=+-| -+..|-|.-||-..++|=+. ||-+||
T Consensus 315 ~i~~~~~~~~~~~vpviadGGi~~~-------~di~kAla~GA~~V~~G~~~a~~~e~pg 367 (450)
T TIGR01302 315 AVYDVAEYAAQSGIPVIADGGIRYS-------GDIVKALAAGADAVMLGSLLAGTTESPG 367 (450)
T ss_pred HHHHHHHHHhhcCCeEEEeCCCCCH-------HHHHHHHHcCCCEEEECchhhcCCcCCC
Confidence 3445566677889999999843333 34566677899999999876 566776
No 153
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=43.26 E-value=3.2e+02 Score=29.08 Aligned_cols=160 Identities=22% Similarity=0.160 Sum_probs=83.8
Q ss_pred ChHHHHHHHHHHH-HhCCcEeeecCCCCChHHHHHHHHhcCCCCccc--chhhhHHHHhcCCCCCCCHHHHHHHHHHHH-
Q 005965 235 SIEEEVYKVQWAT-MWGADTVMDLSTGRHIHETREWILRNSAVPVGT--VPIYQALEKVDGIAENLSWEVFRDTLIEQA- 310 (667)
Q Consensus 235 ~ieeEveKl~~A~-~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGT--VPIYqAl~k~~g~~~~lt~e~~~d~ieeQA- 310 (667)
+.-.-++|+..|+ +.|+-.++-|.-+|-- .--.....|++. ||...........+..||.+++.+.++.-+
T Consensus 79 ~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~-----~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~ 153 (338)
T cd04733 79 EDLEAFREWAAAAKANGALIWAQLNHPGRQ-----SPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAH 153 (338)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEccCCCcC-----CCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHH
Confidence 4556677776555 5688889999887732 110011123332 333211111123467899998888776543
Q ss_pred ------hcCCCEEEEeccc---cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHh-Hhcee--Ee
Q 005965 311 ------EQGVDYFTIHAGV---LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICN-QYDVA--LS 378 (667)
Q Consensus 311 ------eqGVDfmTIHaGv---~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k-~YDVt--lS 378 (667)
+.|.|.+-||+|- .-+.+.-..++-++ ..|||+.-.+- |..+-.+.|-+-+- .+.|. +|
T Consensus 154 aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D--~yGGslenR~r-------f~~EiI~aIR~avG~d~~v~vris 224 (338)
T cd04733 154 AARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTD--EYGGSLENRAR-------LLLEIYDAIRAAVGPGFPVGIKLN 224 (338)
T ss_pred HHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCc--cCCCCHHHHHH-------HHHHHHHHHHHHcCCCCeEEEEEc
Confidence 4799999999983 33344333333333 25999743321 33444444444442 22233 34
Q ss_pred ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEee
Q 005965 379 IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNE 420 (667)
Q Consensus 379 LGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIE 420 (667)
.-|.++.|- | ..|. -+++++.-++||.. ||
T Consensus 225 ~~~~~~~g~-----~---~eea---~~ia~~Le~~Gvd~-ie 254 (338)
T cd04733 225 SADFQRGGF-----T---EEDA---LEVVEALEEAGVDL-VE 254 (338)
T ss_pred HHHcCCCCC-----C---HHHH---HHHHHHHHHcCCCE-EE
Confidence 344444431 2 1232 35556666778844 44
No 154
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=42.92 E-value=46 Score=36.06 Aligned_cols=65 Identities=20% Similarity=0.191 Sum_probs=42.2
Q ss_pred HHHHHHHHH------hCCcEeeecCCC--------CChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHH
Q 005965 240 VYKVQWATM------WGADTVMDLSTG--------RHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDT 305 (667)
Q Consensus 240 veKl~~A~~------~GADtVMDLSTG--------gdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ 305 (667)
++-+..|++ +|||-|| |=.- .+.+++++.+-..- +.+| ++-.||. | .++
T Consensus 213 leea~ea~~~~~~~~agaDiIm-LDnm~~~~~~~~~~~e~l~~av~~~~----~~~~----lEaSGGI----t----~~n 275 (308)
T PLN02716 213 LEEVKEVLEYLSDTKTSLTRVM-LDNMVVPLENGDVDVSMLKEAVELIN----GRFE----TEASGNV----T----LDT 275 (308)
T ss_pred HHHHHHHHHhcccccCCCCEEE-eCCCcccccccCCCHHHHHHHHHhhC----CCce----EEEECCC----C----HHH
Confidence 345566788 9999998 4222 17788888763211 3444 3333443 2 478
Q ss_pred HHHHHhcCCCEEEEec
Q 005965 306 LIEQAEQGVDYFTIHA 321 (667)
Q Consensus 306 ieeQAeqGVDfmTIHa 321 (667)
|.+-|+-||||+.+=+
T Consensus 276 i~~yA~tGVD~Is~Ga 291 (308)
T PLN02716 276 VHKIGQTGVTYISSGA 291 (308)
T ss_pred HHHHHHcCCCEEEeCc
Confidence 8999999999997644
No 155
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=42.43 E-value=96 Score=31.66 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=65.4
Q ss_pred cccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcC
Q 005965 278 VGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKEN 357 (667)
Q Consensus 278 VGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~EN 357 (667)
.-.|||=+.+.+ |. ..+.+++...+++-.+-|+|-+.+|.|..+...+. .+.=+++|.+=|+ -.
T Consensus 18 ~~~~aiDh~~l~--gp--~~~~~~~~~~~~~a~~~~~~~v~~~p~~~~~~~~~-~~~~~~~~~~~~~-----------~~ 81 (258)
T TIGR01949 18 TVIVPMDHGVSN--GP--IKGLVDIRKTVNEVAEGGADAVLLHKGIVRRGHRG-YGKDVGLIIHLSA-----------ST 81 (258)
T ss_pred EEEEECCCcccc--CC--CCCcCCHHHHHHHHHhcCCCEEEeCcchhhhcccc-cCCCCcEEEEEcC-----------CC
Confidence 445777666543 22 34778998988888888999999999987765443 2223445544321 02
Q ss_pred chh------hhHHHHHHHHh----HhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 005965 358 FAY------EHWDEILDICN----QYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (667)
Q Consensus 358 pLY------e~FD~ileI~k----~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (667)
|++ ..++++-+.++ ..++...+|+ .++..++. .+.++.+.|.++|+-++|
T Consensus 82 ~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~---------~~~~~~~~---~~~~i~~~~~~~g~~liv 141 (258)
T TIGR01949 82 SLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGS---------DTEWEQIR---DLGMIAEICDDWGVPLLA 141 (258)
T ss_pred CCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCC---------chHHHHHH---HHHHHHHHHHHcCCCEEE
Confidence 222 12223333332 2344444441 23344443 456677777888988887
No 156
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=42.34 E-value=3.6e+02 Score=26.90 Aligned_cols=64 Identities=11% Similarity=0.074 Sum_probs=44.1
Q ss_pred hHHHHHHHHhHhceeEec-c---CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCC
Q 005965 362 HWDEILDICNQYDVALSI-G---DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIP 426 (667)
Q Consensus 362 ~FD~ileI~k~YDVtlSL-G---DGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVP 426 (667)
..++|-+.+++|.++++. + +++ |-.+.+..++..-+.+..+-...+.|.+.|+.+|+=.|||..
T Consensus 48 ~~~~l~~~~~~~gl~v~s~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~ 115 (275)
T PRK09856 48 GIKQIKALAQTYQMPIIGYTPETNGY-PYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAG 115 (275)
T ss_pred HHHHHHHHHHHcCCeEEEecCcccCc-CccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCC
Confidence 468899999999999854 2 222 333444333322233566678888999999999999999853
No 157
>PRK08005 epimerase; Validated
Probab=42.33 E-value=47 Score=33.89 Aligned_cols=122 Identities=16% Similarity=0.004 Sum_probs=67.4
Q ss_pred eEeeccccCCCCCChHHHHHHHHHHHHhCCcE----eeecCCCCChH---HHHHHHHhcCCCCcccchhhhHHHHhcCCC
Q 005965 222 KVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIH---ETREWILRNSAVPVGTVPIYQALEKVDGIA 294 (667)
Q Consensus 222 KVNANIGtS~~~~~ieeEveKl~~A~~~GADt----VMDLSTGgdi~---~~R~~Il~nspvPVGTVPIYqAl~k~~g~~ 294 (667)
+|..+| -|++...+++|++++. ++|+|. |||=.--.||. .+=++|-+.+++|+ ++ +=-+
T Consensus 2 ~i~pSi-l~ad~~~l~~el~~l~---~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~------Dv----HLMv 67 (210)
T PRK08005 2 ILHPSL-ASADPLRYAEALTALH---DAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPL------SF----HLMV 67 (210)
T ss_pred EEEeeh-hhCCHHHHHHHHHHHH---HCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCe------EE----Eecc
Confidence 455556 4666678888888775 569997 67733333321 13333333343331 11 0001
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCc-----CchhhhHHHHHHH
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKE-----NFAYEHWDEILDI 369 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~E-----NpLYe~FD~ileI 369 (667)
. +++. .|++-++.|+|++|||.--+.. +.+ +.+++..++.. ||- |-.+.|..+
T Consensus 68 ~--~P~~---~i~~~~~~gad~It~H~Ea~~~-~~~---------------~l~~Ik~~G~k~GlAlnP~-Tp~~~i~~~ 125 (210)
T PRK08005 68 S--SPQR---WLPWLAAIRPGWIFIHAESVQN-PSE---------------ILADIRAIGAKAGLALNPA-TPLLPYRYL 125 (210)
T ss_pred C--CHHH---HHHHHHHhCCCEEEEcccCccC-HHH---------------HHHHHHHcCCcEEEEECCC-CCHHHHHHH
Confidence 1 2343 5666778899999999974421 110 22333333332 553 777777777
Q ss_pred HhHhceeEec
Q 005965 370 CNQYDVALSI 379 (667)
Q Consensus 370 ~k~YDVtlSL 379 (667)
+..-|..|=+
T Consensus 126 l~~vD~VlvM 135 (210)
T PRK08005 126 ALQLDALMIM 135 (210)
T ss_pred HHhcCEEEEE
Confidence 7777866544
No 158
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=41.78 E-value=1.5e+02 Score=33.90 Aligned_cols=97 Identities=22% Similarity=0.139 Sum_probs=60.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecccccccccc------ccCcccCccccccHHHHHHHHHcCCcCc-hhhhHHHH
Q 005965 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPL------TAKRMTGIVSRGGSIHAKWCLAYHKENF-AYEHWDEI 366 (667)
Q Consensus 294 ~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~------~~~RvtgIVSRGGSi~a~Wml~h~~ENp-LYe~FD~i 366 (667)
...||+.|..| |.--++.||||+.+=.==+.+.+.. ..++-+.|+.. =|++ -++++|+|
T Consensus 169 ~p~ltekD~~d-i~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiak-------------IEt~~av~nldeI 234 (480)
T cd00288 169 LPALSEKDKAD-LRFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAK-------------IENQEGVNNFDEI 234 (480)
T ss_pred CCCCCHHHHHH-HHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEE-------------ECCHHHHHhHHHH
Confidence 45588888776 6678899999998765323333321 11222233322 1332 36788888
Q ss_pred HHHH-----hHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 005965 367 LDIC-----NQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (667)
Q Consensus 367 leI~-----k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (667)
++.+ .+.|..+++|. ..+.+ .+.++.+.|+++|+.|++
T Consensus 235 ~~~~DgImIargDLg~e~g~-------------~~v~~--~qk~ii~~~~~~gkpvi~ 277 (480)
T cd00288 235 LEASDGIMVARGDLGVEIPA-------------EEVFL--AQKMLIAKCNLAGKPVIT 277 (480)
T ss_pred HHhcCEEEECcchhhhhcCh-------------HHHHH--HHHHHHHHHHHcCCCEEE
Confidence 8863 35666777771 22322 466799999999999886
No 159
>TIGR02033 D-hydantoinase D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme.
Probab=41.68 E-value=4.8e+02 Score=28.10 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.4
Q ss_pred HHHHHHhCCcEeeecCCC
Q 005965 243 VQWATMWGADTVMDLSTG 260 (667)
Q Consensus 243 l~~A~~~GADtVMDLSTG 260 (667)
.+.|++.|.-||+|....
T Consensus 77 s~~a~~~GvTtv~d~~~~ 94 (454)
T TIGR02033 77 TKAAAAGGTTTIIDFALP 94 (454)
T ss_pred HHHHHhCCCCEEEeCcCC
Confidence 356889999999997643
No 160
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=41.68 E-value=64 Score=33.70 Aligned_cols=157 Identities=17% Similarity=0.179 Sum_probs=86.6
Q ss_pred CCCCChHHHHHHHHHHHHhCCcEe-eecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCC----CCCHHHHHHH
Q 005965 231 AVASSIEEEVYKVQWATMWGADTV-MDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAE----NLSWEVFRDT 305 (667)
Q Consensus 231 ~~~~~ieeEveKl~~A~~~GADtV-MDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~----~lt~e~~~d~ 305 (667)
++..++++|+.|+ +++|||-+ +|.-.|. . -..+.+|- |+-++|.+.-+... .|=.+.=.+.
T Consensus 14 ~dfanL~~e~~~~---l~~GadwlHlDVMDg~--------F--VpNiT~G~-pvV~slR~~~~~~~ffD~HmMV~~Peq~ 79 (224)
T KOG3111|consen 14 SDFANLAAECKKM---LDAGADWLHLDVMDGH--------F--VPNITFGP-PVVESLRKHTGADPFFDVHMMVENPEQW 79 (224)
T ss_pred cchHHHHHHHHHH---HHcCCCeEEEeeeccc--------c--cCCcccch-HHHHHHHhccCCCcceeEEEeecCHHHH
Confidence 3445667777666 67899975 4444442 1 12244553 77788877533211 1111111245
Q ss_pred HHHHHhcCCCEEEEecccccccccc-----ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEecc
Q 005965 306 LIEQAEQGVDYFTIHAGVLLRYIPL-----TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIG 380 (667)
Q Consensus 306 ieeQAeqGVDfmTIHaGv~~~~l~~-----~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLG 380 (667)
|..-|..|++.||+|+-.+.+..++ ..+=..|++= || =|.-|.|...+..-|++|-.
T Consensus 80 V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~al----------------kP-gT~Ve~~~~~~~~~D~vLvM- 141 (224)
T KOG3111|consen 80 VDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLAL----------------KP-GTPVEDLEPLAEHVDMVLVM- 141 (224)
T ss_pred HHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEe----------------CC-CCcHHHHHHhhccccEEEEE-
Confidence 7778999999999999987764332 2244444432 22 14456677777777777654
Q ss_pred CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC
Q 005965 381 DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM 427 (667)
Q Consensus 381 DGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl 427 (667)
..-||-..-.-=+.++.-... -|++....-||.=|-|-+
T Consensus 142 -tVePGFGGQkFme~mm~KV~~-------lR~kyp~l~ievDGGv~~ 180 (224)
T KOG3111|consen 142 -TVEPGFGGQKFMEDMMPKVEW-------LREKYPNLDIEVDGGVGP 180 (224)
T ss_pred -EecCCCchhhhHHHHHHHHHH-------HHHhCCCceEEecCCcCc
Confidence 355665544333333332222 235666666666655443
No 161
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=41.67 E-value=52 Score=35.45 Aligned_cols=64 Identities=33% Similarity=0.424 Sum_probs=41.5
Q ss_pred HHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Q 005965 240 VYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (667)
Q Consensus 240 veKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTI 319 (667)
++-+..|+++|||-|| |=+- +..++++.+-... +.+. ++-.||. | .+.|++-|+-||||+.+
T Consensus 218 leea~ea~~~gaDiI~-LDn~-s~e~~~~av~~~~----~~~~----ieaSGGI----~----~~ni~~yA~tGVD~Is~ 279 (296)
T PRK09016 218 LDELDQALKAGADIIM-LDNF-TTEQMREAVKRTN----GRAL----LEVSGNV----T----LETLREFAETGVDFISV 279 (296)
T ss_pred HHHHHHHHHcCCCEEE-eCCC-ChHHHHHHHHhhc----CCeE----EEEECCC----C----HHHHHHHHhcCCCEEEe
Confidence 4456678999999999 5333 5677777764321 1221 2222333 2 37888999999999976
Q ss_pred ec
Q 005965 320 HA 321 (667)
Q Consensus 320 Ha 321 (667)
=+
T Consensus 280 ga 281 (296)
T PRK09016 280 GA 281 (296)
T ss_pred Cc
Confidence 44
No 162
>PRK13207 ureC urease subunit alpha; Reviewed
Probab=41.57 E-value=98 Score=36.20 Aligned_cols=57 Identities=28% Similarity=0.396 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCC
Q 005965 303 RDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDG 382 (667)
Q Consensus 303 ~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDG 382 (667)
++.|++|.++|+++|-+|..- | -+ ...++++|+.+++||+.+.+
T Consensus 203 ~~~L~e~i~aGA~gfKi~~d~-------------------g------------~t--~~~l~~aL~~A~~~gv~V~i--- 246 (568)
T PRK13207 203 PEALEEQIEAGAIGLKLHEDW-------------------G------------AT--PAAIDNCLSVADEYDVQVAI--- 246 (568)
T ss_pred HHHHHHHHHcCCCEEeecCCC-------------------C------------CC--HHHHHHHHHHHHHhCCEEEE---
Confidence 577889999999999999310 1 02 36889999999999998874
Q ss_pred CCCCCccCCCcHHHHHHH
Q 005965 383 LRPGSIYDANDTAQFAEL 400 (667)
Q Consensus 383 LRPG~iaDA~D~AQ~~EL 400 (667)
=+|..+++-|.|.
T Consensus 247 -----Ha~tlne~G~~e~ 259 (568)
T PRK13207 247 -----HTDTLNESGFVED 259 (568)
T ss_pred -----eCCCcccchHHHH
Confidence 3455555555554
No 163
>PRK06852 aldolase; Validated
Probab=41.53 E-value=35 Score=36.80 Aligned_cols=181 Identities=12% Similarity=0.053 Sum_probs=95.7
Q ss_pred HHHHHHHHHHhcCCCEEEEeccccccccccccCcccCcccc--ccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEe
Q 005965 301 VFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSR--GGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALS 378 (667)
Q Consensus 301 ~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSR--GGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlS 378 (667)
++..+++.-.+.|+|-+..|-|+.+.+.+.. +-++++=| +++-+.. ...-+|++ -++-|
T Consensus 60 dp~~~i~~~~~~g~dav~~~~G~l~~~~~~~--~~~~lIlkl~~~t~l~~----~~~~~p~~-------------~l~~s 120 (304)
T PRK06852 60 DPEHLFRIASKAKIGVFATQLGLIARYGMDY--PDVPYLVKLNSKTNLVK----TSQRDPLS-------------RQLLD 120 (304)
T ss_pred CHHHHHHHHHhcCCCEEEeCHHHHHhhcccc--CCCcEEEEECCCCCcCC----cccCCccc-------------cceec
Confidence 3444555555679999999999987765432 12333322 2221110 00002321 12333
Q ss_pred ccCCCCCCCc----cCCC-------cHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCcc
Q 005965 379 IGDGLRPGSI----YDAN-------DTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFY 447 (667)
Q Consensus 379 LGDGLRPG~i----aDA~-------D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfY 447 (667)
.=|.+|-||- +||- +..+.+.|..|+++++.|.++|+-+|+. -|
T Consensus 121 VeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~-------------------------~y 175 (304)
T PRK06852 121 VEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLW-------------------------IY 175 (304)
T ss_pred HHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEE-------------------------ee
Confidence 4445554433 3331 3445677888999999999999999972 24
Q ss_pred ccCccccccCCCchhHHHhHHHHHhhhcccceeeecCcccccCCCChhHHHHHHHHHHHHHHHhhhhcCCcchhhHHHHH
Q 005965 448 TLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDAL 527 (667)
Q Consensus 448 vLGPLvTDIApGYDHItsAIGaA~aa~~GadfLCYVTPaEHLgLP~~eDVreGVIA~kIAAHaaDlaKg~p~A~~rD~~m 527 (667)
..||-+.|-- ..|-|.-|. =+++-.|||++---=|.-|.. -+.|..++ |+++ +..+-=|..|.|..-+ +..+
T Consensus 176 prG~~i~~~~-~~~~ia~aa--RiaaELGADIVKv~y~~~~~~-g~~e~f~~-vv~~--~g~vpVviaGG~k~~~-~e~L 247 (304)
T PRK06852 176 PRGKAVKDEK-DPHLIAGAA--GVAACLGADFVKVNYPKKEGA-NPAELFKE-AVLA--AGRTKVVCAGGSSTDP-EEFL 247 (304)
T ss_pred ccCcccCCCc-cHHHHHHHH--HHHHHHcCCEEEecCCCcCCC-CCHHHHHH-HHHh--CCCCcEEEeCCCCCCH-HHHH
Confidence 4466554321 123444444 578899999997543432322 13456665 3321 1133334556666533 3345
Q ss_pred HHHHhh
Q 005965 528 SKARFE 533 (667)
Q Consensus 528 S~AR~~ 533 (667)
...|..
T Consensus 248 ~~v~~a 253 (304)
T PRK06852 248 KQLYEQ 253 (304)
T ss_pred HHHHHH
Confidence 554443
No 164
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=41.47 E-value=1.2e+02 Score=32.61 Aligned_cols=105 Identities=21% Similarity=0.197 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccccccc-cccc-cCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh
Q 005965 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRY-IPLT-AKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY 373 (667)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~-l~~~-~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~Y 373 (667)
+++.+++.+....-.+.|+|++++|-++.... +... .....|-.| |-.+ .+..++.+-++.++.
T Consensus 221 ~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~S-G~~~-------------~~~~l~~v~~l~~~~ 286 (344)
T PRK05286 221 DLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLS-GRPL-------------FERSTEVIRRLYKEL 286 (344)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcc-cHHH-------------HHHHHHHHHHHHHHh
Confidence 56777788877777778999999999863211 1110 011122222 1111 112445666776766
Q ss_pred --ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCC
Q 005965 374 --DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHI 425 (667)
Q Consensus 374 --DVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHV 425 (667)
++.|.- -|-|.++.|..++-+ .=..++..++. .|.+||.-+
T Consensus 287 ~~~ipIig-----~GGI~s~eda~e~l~--aGAd~V~v~~~----~~~~gP~~~ 329 (344)
T PRK05286 287 GGRLPIIG-----VGGIDSAEDAYEKIR--AGASLVQIYSG----LIYEGPGLV 329 (344)
T ss_pred CCCCCEEE-----ECCCCCHHHHHHHHH--cCCCHHHHHHH----HHHhCchHH
Confidence 555553 355666655554432 12355555543 355677643
No 165
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=41.17 E-value=4.6 Score=39.45 Aligned_cols=92 Identities=23% Similarity=0.216 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccC--ccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH-hcee
Q 005965 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTG--IVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ-YDVA 376 (667)
Q Consensus 300 e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~Rvtg--IVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~-YDVt 376 (667)
..++..+.+...+|-..+-+-.. .+.|... ||||-|.-+.+. ...-..+.++.++... |||.
T Consensus 16 ~eLi~~~~~~~~~~~~v~~~kp~--------~D~R~~~~~I~s~~g~~~~~~-------~~~~~~~~~~~~~~~~~~dvI 80 (176)
T PF00265_consen 16 TELIRRIHRYEIAGKKVLVFKPA--------IDTRYGEDKIVSHDGISLEAI-------VDPIDNLFEIIDILENDYDVI 80 (176)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEES--------TSCCCCSSEEEHTTSCEEEEE-------SSEESSGGGGGGGCCTTCSEE
T ss_pred HHHHHHHHHHHhCCCeEEEEEec--------ccCcCCCCeEEecCCCccccc-------ccchhhHHHHHHHhccCCCEE
Confidence 46777777777888887755443 3456554 899988655444 2233345555555555 8887
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeC
Q 005965 377 LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEG 421 (667)
Q Consensus 377 lSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEG 421 (667)
+ -|++||=+ ..+-+|++.+.++|+-|++=|
T Consensus 81 ~--------------IDEaQFf~-~~i~~l~~~~~~~g~~Vi~~G 110 (176)
T PF00265_consen 81 G--------------IDEAQFFD-EQIVQLVEILANKGIPVICAG 110 (176)
T ss_dssp E--------------ESSGGGST-TTHHHHHHHHHHTT-EEEEEE
T ss_pred E--------------EechHhhH-HHHHHHHHHHHhCCCeEEEEe
Confidence 5 59999988 777889999999999999987
No 166
>PRK03906 mannonate dehydratase; Provisional
Probab=40.92 E-value=1.9e+02 Score=32.19 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=76.8
Q ss_pred cccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCc-
Q 005965 278 VGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKE- 356 (667)
Q Consensus 278 VGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~E- 356 (667)
|-.||+-+.+. .++.--+=--|.+.++|+.-++.||..++... .- .+..+..++ .-.-||||-...+-...=..
T Consensus 62 vEs~pv~~~Ik-~g~~~rd~~ie~y~~sirnlg~~GI~~icYnf-mp--v~dwtrt~l-~~~~~~ga~~l~f~~~~~~~~ 136 (385)
T PRK03906 62 VESVPVHEDIK-TGTPNRDRYIENYKQTLRNLAAAGIKVVCYNF-MP--VFDWTRTDL-AYELPDGSTALRFDQIDFAAF 136 (385)
T ss_pred EeCCCccHHHH-cCCCCHHHHHHHHHHHHHHHHhcCCcEEEecC-cc--cccccCccc-cccCCCCchhhhcchhhHhhc
Confidence 34566666543 33322333347788999999999999998876 21 122222222 24468998877763322111
Q ss_pred Cc-------------------hhhhHHHHHHHH-hHhceeEeccCCCCCCCc--------------cCCCcHHHHHHH--
Q 005965 357 NF-------------------AYEHWDEILDIC-NQYDVALSIGDGLRPGSI--------------YDANDTAQFAEL-- 400 (667)
Q Consensus 357 Np-------------------LYe~FD~ileI~-k~YDVtlSLGDGLRPG~i--------------aDA~D~AQ~~EL-- 400 (667)
.| -.+.|+..++.. .+-..++=+ || ||.- +..-|+.|.-|-
T Consensus 137 ~~~~l~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~L~~~~i~--~l-pG~~~~~~~~~~~~~~~~y~~i~~e~lw~~l~ 213 (385)
T PRK03906 137 DPHILKRPGAEADYGEEEIAQAAARFAAMSEEDKARLTRNIIA--GL-PGWEEPYTLEQFRALLELYKDIDEEKLRENLA 213 (385)
T ss_pred CHHHhcccchhhcCCHHHHHHHHHHHHhCCHHHHHHhhccEEE--eC-CCCCccccHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 11 123455555442 222222211 22 6633 344566666553
Q ss_pred HHHHHHHHHHHhcCCeEEee
Q 005965 401 LTQGELTRRAWDKDVQVMNE 420 (667)
Q Consensus 401 ~~LGEL~krA~e~gVQVMIE 420 (667)
..|.+++..|.++||++-||
T Consensus 214 ~fL~~v~p~Aee~GV~Laih 233 (385)
T PRK03906 214 YFLKAIIPVAEEVGVKMAIH 233 (385)
T ss_pred HHHHHHHHHHHHcCCEEEEe
Confidence 35889999999999999999
No 167
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=40.87 E-value=2.5e+02 Score=31.59 Aligned_cols=132 Identities=16% Similarity=0.284 Sum_probs=69.1
Q ss_pred CCCCCCHHHHHHHHHHHHh-cCCCEEEEecc---ccccccccccCccc-CccccccHHHHHHHHHcCCcCchhhhHHHHH
Q 005965 293 IAENLSWEVFRDTLIEQAE-QGVDYFTIHAG---VLLRYIPLTAKRMT-GIVSRGGSIHAKWCLAYHKENFAYEHWDEIL 367 (667)
Q Consensus 293 ~~~~lt~e~~~d~ieeQAe-qGVDfmTIHaG---v~~~~l~~~~~Rvt-gIVSRGGSi~a~Wml~h~~ENpLYe~FD~il 367 (667)
..-.-+.|.+.+.|+...+ .||.+|.+.-. ++++.+. ++. .|+.|| .+-..|.....-.+-+ . -+++|
T Consensus 218 ~~R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~----~l~~~l~~~~-~l~i~w~~~~r~~~i~-~-d~ell 290 (497)
T TIGR02026 218 RYRHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQ----EFCEEIIARN-PISVTWGINTRVTDIV-R-DADIL 290 (497)
T ss_pred eeecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHH----HHHHHHHhcC-CCCeEEEEeccccccc-C-CHHHH
Confidence 3455678899999998764 69998876532 2222111 110 122232 1112342222222211 1 25788
Q ss_pred HHHhHhce-eEeccCCCCCCCccCCCcHHHHHHH------HHHHHHHHHHHhcCCe----EEeeCCCCCCCCchHHHHHH
Q 005965 368 DICNQYDV-ALSIGDGLRPGSIYDANDTAQFAEL------LTQGELTRRAWDKDVQ----VMNEGPGHIPMHKIPENMQK 436 (667)
Q Consensus 368 eI~k~YDV-tlSLGDGLRPG~iaDA~D~AQ~~EL------~~LGEL~krA~e~gVQ----VMIEGPGHVPl~~I~~Nv~l 436 (667)
+.+++..+ .+++| + ++.|...+..+ ...-+.++.++++|+. .|+=-||. -...++++++.
T Consensus 291 ~~l~~aG~~~v~iG--i------ES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~e-t~e~~~~t~~~ 361 (497)
T TIGR02026 291 HLYRRAGLVHISLG--T------EAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENE-TDETFEETYRQ 361 (497)
T ss_pred HHHHHhCCcEEEEc--c------ccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCC-CHHHHHHHHHH
Confidence 88888876 46775 2 22222222211 1233567778888874 45544775 55677777777
Q ss_pred HHHh
Q 005965 437 QLEW 440 (667)
Q Consensus 437 qk~l 440 (667)
-+++
T Consensus 362 ~~~l 365 (497)
T TIGR02026 362 LLDW 365 (497)
T ss_pred HHHc
Confidence 6664
No 168
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=40.86 E-value=40 Score=41.81 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=59.3
Q ss_pred ch-hhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHH
Q 005965 358 FA-YEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQK 436 (667)
Q Consensus 358 pL-Ye~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~l 436 (667)
.+ |..++++++.+++.|+++|+--. ++ -.++++.|-++|+.+..|. .+.+.++.
T Consensus 633 ~lDv~D~e~L~~~v~~~DaVIsalP~-------------~~-----H~~VAkaAieaGkHvv~ek-------y~~~e~~~ 687 (1042)
T PLN02819 633 QLDVSDSESLLKYVSQVDVVISLLPA-------------SC-----HAVVAKACIELKKHLVTAS-------YVSEEMSA 687 (1042)
T ss_pred EeecCCHHHHHHhhcCCCEEEECCCc-------------hh-----hHHHHHHHHHcCCCEEECc-------CCHHHHHH
Confidence 44 78889999999999999997532 11 2678899999999999997 44555655
Q ss_pred HHHhcCCCCccccCccccccCCCchhHHH
Q 005965 437 QLEWCNEAPFYTLGPLTTDIAPGYDHITS 465 (667)
Q Consensus 437 qk~lC~~APfYvLGPLvTDIApGYDHIts 465 (667)
..+.|..|-.-++.-.- .+||+|||-+
T Consensus 688 L~e~Ak~AGV~~m~e~G--lDPGid~~lA 714 (1042)
T PLN02819 688 LDSKAKEAGITILCEMG--LDPGIDHMMA 714 (1042)
T ss_pred HHHHHHHcCCEEEECCc--cCHHHHHHHH
Confidence 55666666654443333 8999999654
No 169
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=40.84 E-value=65 Score=32.42 Aligned_cols=169 Identities=23% Similarity=0.194 Sum_probs=89.0
Q ss_pred eEeeccccCCCCCChHHHHHHHHHHHHhCCcE----eeecCCCCCh---HHHHHHHHhcCCCCcccchhhhHHHHhcCCC
Q 005965 222 KVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHI---HETREWILRNSAVPVGTVPIYQALEKVDGIA 294 (667)
Q Consensus 222 KVNANIGtS~~~~~ieeEveKl~~A~~~GADt----VMDLSTGgdi---~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~ 294 (667)
||.++|= +.+...+++|++++ .++|+|. |||-.--.|+ ..+=++|-+.+.+|+-. +=-+
T Consensus 1 kI~pSil-~ad~~~l~~~i~~l---~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~Dv----------HLMv 66 (201)
T PF00834_consen 1 KISPSIL-SADFLNLEEEIKRL---EEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDV----------HLMV 66 (201)
T ss_dssp EEEEBGG-GS-GGGHHHHHHHH---HHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEE----------EEES
T ss_pred Ceehhhh-hCCHHHHHHHHHHH---HHcCCCEEEEeecccccCCcccCCHHHHHHHhhcCCCcEEE----------Eeee
Confidence 6667774 45577888998877 5678885 6884443333 23333443334333311 0000
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEecccccccccc-----ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHH
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPL-----TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDI 369 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~-----~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI 369 (667)
-+++. .|++-++.|+|++|+|.--+....+. ..+=-.||+ =|| -|.++.+.++
T Consensus 67 --~~P~~---~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~Gia----------------lnP-~T~~~~~~~~ 124 (201)
T PF00834_consen 67 --ENPER---YIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIA----------------LNP-ETPVEELEPY 124 (201)
T ss_dssp --SSGGG---HHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEE----------------E-T-TS-GGGGTTT
T ss_pred --ccHHH---HHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEE----------------EEC-CCCchHHHHH
Confidence 12344 45555778999999999744322221 122223433 255 3566677777
Q ss_pred HhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchH
Q 005965 370 CNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIP 431 (667)
Q Consensus 370 ~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~ 431 (667)
+..-|..+=+. .-||.-.-.-.+..+.-+..+-++.+... .++.++|-| -+-.+.|+
T Consensus 125 l~~vD~VlvMs--V~PG~~Gq~f~~~~~~KI~~l~~~~~~~~-~~~~I~vDG--GI~~~~~~ 181 (201)
T PF00834_consen 125 LDQVDMVLVMS--VEPGFGGQKFIPEVLEKIRELRKLIPENG-LDFEIEVDG--GINEENIK 181 (201)
T ss_dssp GCCSSEEEEES--S-TTTSSB--HGGHHHHHHHHHHHHHHHT-CGSEEEEES--SESTTTHH
T ss_pred hhhcCEEEEEE--ecCCCCcccccHHHHHHHHHHHHHHHhcC-CceEEEEEC--CCCHHHHH
Confidence 78889887775 56887666666655555554444443322 556666665 44444443
No 170
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=40.10 E-value=3.9e+02 Score=26.66 Aligned_cols=148 Identities=21% Similarity=0.221 Sum_probs=88.3
Q ss_pred ChHHHHHHHHHHHHhCCcEeeecCC----CCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCC---CCCCHHHHHHHHH
Q 005965 235 SIEEEVYKVQWATMWGADTVMDLST----GRHIHETREWILRNSAVPVGTVPIYQALEKVDGIA---ENLSWEVFRDTLI 307 (667)
Q Consensus 235 ~ieeEveKl~~A~~~GADtVMDLST----Ggdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~---~~lt~e~~~d~ie 307 (667)
+.++=.+-+..|++.|...+ |-+. |..-..+.+.+ +..+ +-..|= ..-|.+... .+.+.+.+++.|+
T Consensus 27 ~~~~~~~~l~~A~~~Gi~~i-DTA~~Yg~g~sE~~lG~al-~~~~-~R~~~~---i~tK~~~~~~~~~~~~~~~~~~~l~ 100 (285)
T cd06660 27 DEEEAAAAVRAALDAGINFI-DTADVYGDGESEELLGEAL-KERG-PREEVF---IATKVGPRPGDGRDLSPEHIRRAVE 100 (285)
T ss_pred CHHHHHHHHHHHHHcCCCeE-ECccccCCCCCHHHHHHHH-hccC-CcCcEE---EEeeecCCCCCCCCCCHHHHHHHHH
Confidence 45555666899999999886 6541 22344444443 4332 000000 011221111 3467888888888
Q ss_pred HHHhc----CCCEEEEecccc--------ccccc--cccC--cccCccccccHHHHHHHHHc--------CCcCchhhhH
Q 005965 308 EQAEQ----GVDYFTIHAGVL--------LRYIP--LTAK--RMTGIVSRGGSIHAKWCLAY--------HKENFAYEHW 363 (667)
Q Consensus 308 eQAeq----GVDfmTIHaGv~--------~~~l~--~~~~--RvtgIVSRGGSi~a~Wml~h--------~~ENpLYe~F 363 (667)
+..+. =+|.+-+|.=-. .+.++ +.++ |..||-+-+...+.+.+... -.=||++..+
T Consensus 101 ~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~ 180 (285)
T cd06660 101 ESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQA 180 (285)
T ss_pred HHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCch
Confidence 77763 378888997211 11122 1334 77888888877777776552 2347888777
Q ss_pred H-HHHHHHhHhceeEe----ccCCCCCCCc
Q 005965 364 D-EILDICNQYDVALS----IGDGLRPGSI 388 (667)
Q Consensus 364 D-~ileI~k~YDVtlS----LGDGLRPG~i 388 (667)
+ .+++.|+++++.+- ||-|+..+..
T Consensus 181 ~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~ 210 (285)
T cd06660 181 EEELLPYCREHGIGVIAYSPLAGGLLTGKY 210 (285)
T ss_pred HHHHHHHHHHcCcEEEEeccccCceecCCC
Confidence 7 79999999999884 5555554443
No 171
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.00 E-value=50 Score=34.92 Aligned_cols=68 Identities=22% Similarity=0.233 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 005965 239 EVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFT 318 (667)
Q Consensus 239 EveKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmT 318 (667)
.+|-+..|.++|||.|| | ..-+...+++.+-. ..---..+. + .+-|.+ |. +.+.+-|+-|||++.
T Consensus 191 tleea~~A~~~GaDiI~-L-Dn~~~e~l~~~v~~-~~~~~~~~~----i-eAsGgI---t~----~ni~~ya~~GvD~Is 255 (273)
T PRK05848 191 SLEEAKNAMNAGADIVM-C-DNMSVEEIKEVVAY-RNANYPHVL----L-EASGNI---TL----ENINAYAKSGVDAIS 255 (273)
T ss_pred CHHHHHHHHHcCCCEEE-E-CCCCHHHHHHHHHH-hhccCCCeE----E-EEECCC---CH----HHHHHHHHcCCCEEE
Confidence 35567789999999999 5 56688888887742 111011222 1 122333 44 567778999999998
Q ss_pred Eec
Q 005965 319 IHA 321 (667)
Q Consensus 319 IHa 321 (667)
+=+
T Consensus 256 vG~ 258 (273)
T PRK05848 256 SGS 258 (273)
T ss_pred eCh
Confidence 755
No 172
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=39.93 E-value=13 Score=37.03 Aligned_cols=83 Identities=19% Similarity=0.193 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCcEe-eecCCC----------CChHHHHHHHHhcCCCCcccc-hhhhHHHHhcCCCCCCCHHHHHHHHHH
Q 005965 241 YKVQWATMWGADTV-MDLSTG----------RHIHETREWILRNSAVPVGTV-PIYQALEKVDGIAENLSWEVFRDTLIE 308 (667)
Q Consensus 241 eKl~~A~~~GADtV-MDLSTG----------gdi~~~R~~Il~nspvPVGTV-PIYqAl~k~~g~~~~lt~e~~~d~iee 308 (667)
+.+..+.+.|.|.| +.++.- .++.++|+++ +...|++-.. |.|--+.......-+-+.+.|.+.|+-
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~-~~~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~ 92 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEAL-KENNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIKR 92 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHH-HHcCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHHH
Confidence 46788889999988 222111 2366777664 4555665321 433211110111223345778888888
Q ss_pred HHhcCCCEEEEecccc
Q 005965 309 QAEQGVDYFTIHAGVL 324 (667)
Q Consensus 309 QAeqGVDfmTIHaGv~ 324 (667)
-.+-|.+++++|.|-.
T Consensus 93 A~~lGa~~vv~h~g~~ 108 (273)
T smart00518 93 CEELGIKALVFHPGSY 108 (273)
T ss_pred HHHcCCCEEEEccccc
Confidence 8899999999999853
No 173
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=39.38 E-value=9.8 Score=40.51 Aligned_cols=90 Identities=26% Similarity=0.359 Sum_probs=56.0
Q ss_pred ChHHHHHHHHHHHHhCCcEeeecCC---CCChHHHHHHHHhcCCCCccc-chhhhHHHHhcCCCCCCCHHHHHHHHHHHH
Q 005965 235 SIEEEVYKVQWATMWGADTVMDLST---GRHIHETREWILRNSAVPVGT-VPIYQALEKVDGIAENLSWEVFRDTLIEQA 310 (667)
Q Consensus 235 ~ieeEveKl~~A~~~GADtVMDLST---Ggdi~~~R~~Il~nspvPVGT-VPIYqAl~k~~g~~~~lt~e~~~d~ieeQA 310 (667)
+++.-++.|+..-.+|..||.|.++ |.|...+|+ |=+.|.|.|=+ -=.|..- -.-..+..++.|+|-+.+.+..
T Consensus 36 ~~~~~~~El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~-is~~tGv~II~~TG~y~~~-~~p~~~~~~s~e~la~~~i~Ei 113 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRTIVDATPIGLGRDVEALRE-ISRRTGVNIIASTGFYKEP-FYPEWVREASVEELADLFIREI 113 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEE--SGGGTB-HHHHHH-HHHHHT-EEEEEEEE-SGG-CSCHHHHTSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCEEEecCCcccCcCHHHHHH-HHHHhCCeEEEeCCCCccc-cCChhhhcCCHHHHHHHHHHHH
Confidence 5555566777777899999999998 788877765 55667766522 1222210 0011246778899999999999
Q ss_pred hcCCCEEEEecccccc
Q 005965 311 EQGVDYFTIHAGVLLR 326 (667)
Q Consensus 311 eqGVDfmTIHaGv~~~ 326 (667)
+.|+|--.|.||+-..
T Consensus 114 ~~GidgT~ikaG~Ik~ 129 (308)
T PF02126_consen 114 EEGIDGTGIKAGIIKE 129 (308)
T ss_dssp HT-STTSSB-ESEEEE
T ss_pred HhcCCCCccchhheeE
Confidence 9999966666665433
No 174
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.23 E-value=54 Score=35.05 Aligned_cols=63 Identities=24% Similarity=0.295 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 005965 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (667)
Q Consensus 241 eKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIH 320 (667)
+-+..|+++|||.|| | ..-++.++++++-... +.+ .++-.||. | .+.|++-|+-||||+.+=
T Consensus 204 ee~~ea~~~gaDiIm-L-Dn~s~e~l~~av~~~~----~~~----~leaSGgI----~----~~ni~~yA~tGVD~Is~g 265 (281)
T PRK06543 204 DQIEPVLAAGVDTIM-L-DNFSLDDLREGVELVD----GRA----IVEASGNV----N----LNTVGAIASTGVDVISVG 265 (281)
T ss_pred HHHHHHHhcCCCEEE-E-CCCCHHHHHHHHHHhC----CCe----EEEEECCC----C----HHHHHHHHhcCCCEEEeC
Confidence 455677889999999 4 4557888888775321 222 13333433 2 378888999999999764
Q ss_pred c
Q 005965 321 A 321 (667)
Q Consensus 321 a 321 (667)
+
T Consensus 266 a 266 (281)
T PRK06543 266 A 266 (281)
T ss_pred c
Confidence 4
No 175
>PRK05826 pyruvate kinase; Provisional
Probab=38.71 E-value=1e+02 Score=35.10 Aligned_cols=94 Identities=22% Similarity=0.237 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCC---------cCc-hhhhHH
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHK---------ENF-AYEHWD 364 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~---------ENp-LYe~FD 364 (667)
..||+.+..+ |..-++.|+||+.+=.==+.+.+... ..++...+. |++ -++++|
T Consensus 169 p~lte~D~~~-i~~ald~g~d~I~~sfV~saedv~~l---------------~~~l~~~~~~~~~iiakIEt~eav~nld 232 (465)
T PRK05826 169 PALTEKDKAD-IKFAAEQGVDYIAVSFVRSAEDVEEA---------------RRLLREAGCPHAKIIAKIERAEAVDNID 232 (465)
T ss_pred CCCChhhHHH-HHHHHHCCCCEEEECCCCCHHHHHHH---------------HHHHHHcCCcCceEEEEEcCHHHHHhHH
Confidence 4567777655 56788999999976543344444322 144444433 332 367788
Q ss_pred HHHHHH-----hHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 005965 365 EILDIC-----NQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (667)
Q Consensus 365 ~ileI~-----k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (667)
+|++.. ..+|..++|| ...+.++ +-++.+.|+++|+.|++
T Consensus 233 eI~~~~DgImIgrgDLg~elg-------------~~~v~~~--qk~Ii~~c~~~gKpvi~ 277 (465)
T PRK05826 233 EIIEASDGIMVARGDLGVEIP-------------DEEVPGL--QKKIIRKAREAGKPVIT 277 (465)
T ss_pred HHHHHcCEEEECcchhhhhcC-------------cHhHHHH--HHHHHHHHHHcCCCEEE
Confidence 887762 3455556666 1234433 35888999999999987
No 176
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=38.36 E-value=4.6e+02 Score=26.99 Aligned_cols=186 Identities=17% Similarity=0.106 Sum_probs=98.1
Q ss_pred eEeeccccCCCCCChHHHHHHHHHHHHhCCcE----eeecCCCCChH---HHHHHHHhc-CCCCcccchhhhHHHHhcCC
Q 005965 222 KVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIH---ETREWILRN-SAVPVGTVPIYQALEKVDGI 293 (667)
Q Consensus 222 KVNANIGtS~~~~~ieeEveKl~~A~~~GADt----VMDLSTGgdi~---~~R~~Il~n-spvPVGTVPIYqAl~k~~g~ 293 (667)
+|-.+| -|++...+++|++++. ++|+|. |||=.--.||. .+=++|-+. +.+|+ ++ +=-
T Consensus 5 ~i~pSi-l~ad~~~l~~~i~~l~---~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~------dv----HLM 70 (223)
T PRK08745 5 AIAPSI-LSADFARLGEEVDNVL---KAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPI------DV----HLM 70 (223)
T ss_pred EEEeeh-hhcCHHHHHHHHHHHH---HcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCE------EE----Eec
Confidence 455666 5666778888888775 578998 67744333321 122333333 23331 11 000
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCC-----cCchhhhHHHHHH
Q 005965 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHK-----ENFAYEHWDEILD 368 (667)
Q Consensus 294 ~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~-----ENpLYe~FD~ile 368 (667)
+. +++. .|+.-++.|+|++|||+--+.. +.+ +..|+..++. =|| .|..+.|..
T Consensus 71 v~--~P~~---~i~~~~~~gad~I~~H~Ea~~~-~~~---------------~l~~Ir~~g~k~GlalnP-~T~~~~i~~ 128 (223)
T PRK08745 71 VE--PVDR---IVPDFADAGATTISFHPEASRH-VHR---------------TIQLIKSHGCQAGLVLNP-ATPVDILDW 128 (223)
T ss_pred cC--CHHH---HHHHHHHhCCCEEEEcccCccc-HHH---------------HHHHHHHCCCceeEEeCC-CCCHHHHHH
Confidence 11 2344 4566677899999999985422 111 1233333332 277 488899999
Q ss_pred HHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccc
Q 005965 369 ICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYT 448 (667)
Q Consensus 369 I~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYv 448 (667)
++..-|..|=+. .-||.-.=.--+..+.-+..|-++.+ +++..+-||=-|-|-. +|+..-.+ .||=.+|
T Consensus 129 ~l~~vD~VlvMt--V~PGf~GQ~fi~~~l~KI~~l~~~~~---~~~~~~~IeVDGGI~~----eti~~l~~--aGaDi~V 197 (223)
T PRK08745 129 VLPELDLVLVMS--VNPGFGGQAFIPSALDKLRAIRKKID---ALGKPIRLEIDGGVKA----DNIGAIAA--AGADTFV 197 (223)
T ss_pred HHhhcCEEEEEE--ECCCCCCccccHHHHHHHHHHHHHHH---hcCCCeeEEEECCCCH----HHHHHHHH--cCCCEEE
Confidence 999999776552 35555444444444444443333333 3443333333344443 34433222 4577777
Q ss_pred cCcccc
Q 005965 449 LGPLTT 454 (667)
Q Consensus 449 LGPLvT 454 (667)
.|--+.
T Consensus 198 ~GSaiF 203 (223)
T PRK08745 198 AGSAIF 203 (223)
T ss_pred EChhhh
Confidence 775543
No 177
>PRK06801 hypothetical protein; Provisional
Probab=38.36 E-value=25 Score=37.34 Aligned_cols=80 Identities=26% Similarity=0.225 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCcEee-ecCCC---CChHHHHHHH--HhcCCCCc----ccchhhhHHHHhc--CCCCCCCHHHHHHHHH
Q 005965 240 VYKVQWATMWGADTVM-DLSTG---RHIHETREWI--LRNSAVPV----GTVPIYQALEKVD--GIAENLSWEVFRDTLI 307 (667)
Q Consensus 240 veKl~~A~~~GADtVM-DLSTG---gdi~~~R~~I--l~nspvPV----GTVPIYqAl~k~~--g~~~~lt~e~~~d~ie 307 (667)
++-+..|++.|.++|| |-|.- .|+..+|+-. .+...|+| |.|.-=+--...+ +....-++++..+.++
T Consensus 87 ~e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~ 166 (286)
T PRK06801 87 FEAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVD 166 (286)
T ss_pred HHHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHH
Confidence 4557789999999999 44443 3555555543 23333333 4432000000000 1111223355555544
Q ss_pred HHHhcCCCEEEEecc
Q 005965 308 EQAEQGVDYFTIHAG 322 (667)
Q Consensus 308 eQAeqGVDfmTIHaG 322 (667)
+-||||+.+..|
T Consensus 167 ---~tgvD~LAvaiG 178 (286)
T PRK06801 167 ---RTGIDALAVAIG 178 (286)
T ss_pred ---HHCcCEEEeccC
Confidence 369999999555
No 178
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=37.87 E-value=1.3e+02 Score=32.43 Aligned_cols=81 Identities=11% Similarity=0.104 Sum_probs=51.7
Q ss_pred CChHHHHHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 005965 234 SSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (667)
Q Consensus 234 ~~ieeEveKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqG 313 (667)
.++++=++.++...++|||.|+==+ -.+++++++ +.+..+.|+ ++ ..+ .++....+|.++ -.+-|
T Consensus 162 ~g~deaI~Ra~aY~eAGAD~ifi~~-~~~~~ei~~-~~~~~~~P~--~~--nv~--~~~~~p~~s~~e-------L~~lG 226 (294)
T TIGR02319 162 FGLDEAIRRSREYVAAGADCIFLEA-MLDVEEMKR-VRDEIDAPL--LA--NMV--EGGKTPWLTTKE-------LESIG 226 (294)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEecC-CCCHHHHHH-HHHhcCCCe--eE--EEE--ecCCCCCCCHHH-------HHHcC
Confidence 3689999999999999999999533 346666654 334445553 00 111 123334455444 45679
Q ss_pred CCEEEEeccccccccc
Q 005965 314 VDYFTIHAGVLLRYIP 329 (667)
Q Consensus 314 VDfmTIHaGv~~~~l~ 329 (667)
|.++++++...+....
T Consensus 227 ~~~v~~~~~~~~aa~~ 242 (294)
T TIGR02319 227 YNLAIYPLSGWMAAAS 242 (294)
T ss_pred CcEEEEcHHHHHHHHH
Confidence 9999999876554443
No 179
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=37.63 E-value=34 Score=34.67 Aligned_cols=60 Identities=25% Similarity=0.283 Sum_probs=46.3
Q ss_pred CchhhhHHHHHHHHhHhceeEecc-CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCC
Q 005965 357 NFAYEHWDEILDICNQYDVALSIG-DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIP 426 (667)
Q Consensus 357 NpLYe~FD~ileI~k~YDVtlSLG-DGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVP 426 (667)
.++|+.+++|++.++++++.|=+= -|||-|.- |..-.-++.+++.+.||.|.+=-=-|.|
T Consensus 181 ~~~~~~~~~il~~~~~~g~~lEiNt~g~r~~~~----------~~yP~~~il~~~~~~g~~itlgSDAH~~ 241 (253)
T TIGR01856 181 DEVYELLQRILKLVASQGKALEFNTSGLRKPLE----------EAYPSKELLNLAKELGIPLVLGSDAHGP 241 (253)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEcHhhcCCCC----------CCCCCHHHHHHHHHcCCCEEecCCCCCH
Confidence 447888999999999999998442 27887544 3344457889999999998887667887
No 180
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=37.61 E-value=26 Score=37.20 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCCcEee----ecCCCCChHHHHHHH--HhcCCCCcccchhhhH-HHHhcCC---C---CC-CCHHHHHHH
Q 005965 240 VYKVQWATMWGADTVM----DLSTGRHIHETREWI--LRNSAVPVGTVPIYQA-LEKVDGI---A---EN-LSWEVFRDT 305 (667)
Q Consensus 240 veKl~~A~~~GADtVM----DLSTGgdi~~~R~~I--l~nspvPVGTVPIYqA-l~k~~g~---~---~~-lt~e~~~d~ 305 (667)
++.+..|++.|.++|| +|+.-.||..+|+-. -+...+++ ++ +.+.+|. + .. =++|+-.+.
T Consensus 89 ~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~v------E~ElG~i~g~ed~~~g~s~~t~peea~~f 162 (293)
T PRK07315 89 YEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISV------EAEVGTIGGEEDGIIGKGELAPIEDAKAM 162 (293)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE------EEecCcccCcCccccCccCCCCHHHHHHH
Confidence 5578899999999999 455555666676654 23334554 11 1122220 0 11 345554443
Q ss_pred HHHHHhcCCCEEEEecc
Q 005965 306 LIEQAEQGVDYFTIHAG 322 (667)
Q Consensus 306 ieeQAeqGVDfmTIHaG 322 (667)
+ +.||||+.+=.|
T Consensus 163 ~----~tgvD~LAv~iG 175 (293)
T PRK07315 163 V----ETGIDFLAAGIG 175 (293)
T ss_pred H----HcCCCEEeeccc
Confidence 3 579999987644
No 181
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=37.44 E-value=30 Score=35.75 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecc
Q 005965 296 NLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (667)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDfmTIHaG 322 (667)
-++.+.|++.|..-|.-+...+-+|-.
T Consensus 14 ~~~~~~ik~~id~ma~~k~N~lhlhl~ 40 (351)
T PF00728_consen 14 FFSVDTIKRLIDQMAYYKLNVLHLHLS 40 (351)
T ss_dssp -B-HHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 467788899999999999998888864
No 182
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=37.30 E-value=1.2e+02 Score=32.18 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh--
Q 005965 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY-- 373 (667)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~Y-- 373 (667)
+++.|++.+....-.+.|+|++++|..+.-.. ... +...-...|| + .... -.+..++.+-++.+..
T Consensus 212 ~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~-~~~--~~~~~~~~gG-~-------sG~~-~~~~~l~~v~~l~~~~~~ 279 (327)
T cd04738 212 DLSDEELEDIADVALEHGVDGIIATNTTISRP-GLL--RSPLANETGG-L-------SGAP-LKERSTEVLRELYKLTGG 279 (327)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEECCccccc-ccc--cccccCCCCc-c-------CChh-hhHHHHHHHHHHHHHhCC
Confidence 46667887777776778999999998653211 100 1011111122 0 0000 0124456677777777
Q ss_pred ceeEeccCCCCCCCccCCCcHHHHHHHHH
Q 005965 374 DVALSIGDGLRPGSIYDANDTAQFAELLT 402 (667)
Q Consensus 374 DVtlSLGDGLRPG~iaDA~D~AQ~~EL~~ 402 (667)
++.+.---|++- ..+..|++.
T Consensus 280 ~ipIi~~GGI~t--------~~da~e~l~ 300 (327)
T cd04738 280 KIPIIGVGGISS--------GEDAYEKIR 300 (327)
T ss_pred CCcEEEECCCCC--------HHHHHHHHH
Confidence 677776666753 345555554
No 183
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=37.12 E-value=88 Score=33.29 Aligned_cols=175 Identities=18% Similarity=0.229 Sum_probs=84.9
Q ss_pred ChHHHHHHHHHHHHhCCcEe-eecCC--------CCCh----HHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHH
Q 005965 235 SIEEEVYKVQWATMWGADTV-MDLST--------GRHI----HETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEV 301 (667)
Q Consensus 235 ~ieeEveKl~~A~~~GADtV-MDLST--------Ggdi----~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~ 301 (667)
+.++=.+=++.+.++|||.| +.+|. |.++ .++=+++-+... +|+. .|... ++ ++
T Consensus 110 ~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~-----iPv~---vKl~p---~~--~~ 176 (325)
T cd04739 110 SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVT-----IPVA---VKLSP---FF--SA 176 (325)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccC-----CCEE---EEcCC---Cc--cC
Confidence 44443455566678899987 33442 1122 234444444443 3432 22211 12 23
Q ss_pred HHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccC
Q 005965 302 FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGD 381 (667)
Q Consensus 302 ~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGD 381 (667)
+.+....-.+.|+|.+++|-.+....+.....+. +-.|| +.-...-|+ -.+-+-++.+..++.|.-
T Consensus 177 ~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~---~~~~g-------lSG~~~~~~--al~~v~~v~~~~~ipIig-- 242 (325)
T cd04739 177 LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEV---VPNLL-------LSSPAEIRL--PLRWIAILSGRVKASLAA-- 242 (325)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcCCCCccccccce---ecCCC-------cCCccchhH--HHHHHHHHHcccCCCEEE--
Confidence 4444444446699999999976433333211111 11122 111111121 123344555555666543
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeE----EeeCCCCCCCCchHHHHHHHHH-hcCCCCccccCcccccc
Q 005965 382 GLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQV----MNEGPGHIPMHKIPENMQKQLE-WCNEAPFYTLGPLTTDI 456 (667)
Q Consensus 382 GLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQV----MIEGPGHVPl~~I~~Nv~lqk~-lC~~APfYvLGPLvTDI 456 (667)
-|-|.++.|..++- . |-...||| |.+||+-++ .|..+.+ +..
T Consensus 243 ---~GGI~s~~Da~e~l---~-------aGA~~Vqv~ta~~~~gp~~~~------~i~~~L~~~l~-------------- 289 (325)
T cd04739 243 ---SGGVHDAEDVVKYL---L-------AGADVVMTTSALLRHGPDYIG------TLLAGLEAWME-------------- 289 (325)
T ss_pred ---ECCCCCHHHHHHHH---H-------cCCCeeEEehhhhhcCchHHH------HHHHHHHHHHH--------------
Confidence 34666777765442 1 34566666 567887432 2221111 111
Q ss_pred CCCchhHHHhHHH
Q 005965 457 APGYDHITSAIGA 469 (667)
Q Consensus 457 ApGYDHItsAIGa 469 (667)
.-||.+|.-++|.
T Consensus 290 ~~g~~~i~e~~G~ 302 (325)
T cd04739 290 EHGYESVQQLRGS 302 (325)
T ss_pred HcCCCCHHHHhcc
Confidence 4688999999994
No 184
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=36.88 E-value=4.9e+02 Score=26.88 Aligned_cols=104 Identities=15% Similarity=0.101 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY- 373 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~Y- 373 (667)
.+++++-+.+.++...+.|||-+.+ +|-+-+...++ -++..+++|++.++
T Consensus 17 g~iD~~~l~~~i~~l~~~Gv~gi~~-~Gs~GE~~~ls----------------------------~~Er~~~~~~~~~~~ 67 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANGTDGLVV-VGTTGESPTLT----------------------------HEEHEELIRAVVEAV 67 (292)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEE-CCcCCccccCC----------------------------HHHHHHHHHHHHHHh
Confidence 4699999999999999999999987 67666655543 23444556655554
Q ss_pred --ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe-EEeeCCCCCCCCchHHHHHHHHHhcC
Q 005965 374 --DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ-VMNEGPGHIPMHKIPENMQKQLEWCN 442 (667)
Q Consensus 374 --DVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQ-VMIEGPGHVPl~~I~~Nv~lqk~lC~ 442 (667)
++.+- .|..+.++ ...-++++.|.+.|+. ||+--|-..+..+ ++=++--+++|.
T Consensus 68 ~~~~~vi------~gv~~~~~--------~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~-~~i~~~~~~ia~ 124 (292)
T PRK03170 68 NGRVPVI------AGTGSNST--------AEAIELTKFAEKAGADGALVVTPYYNKPTQ-EGLYQHFKAIAE 124 (292)
T ss_pred CCCCcEE------eecCCchH--------HHHHHHHHHHHHcCCCEEEECCCcCCCCCH-HHHHHHHHHHHh
Confidence 22222 22222222 2334677888889998 6665555555544 444444444444
No 185
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=36.84 E-value=2.5e+02 Score=30.72 Aligned_cols=65 Identities=12% Similarity=-0.003 Sum_probs=40.7
Q ss_pred cCchh-hhHHHHHHHHhHhceeEeccCCCC------CCCccCCCcHHHH-----HHHHHHHHHHHHHHhcCCeEEee
Q 005965 356 ENFAY-EHWDEILDICNQYDVALSIGDGLR------PGSIYDANDTAQF-----AELLTQGELTRRAWDKDVQVMNE 420 (667)
Q Consensus 356 ENpLY-e~FD~ileI~k~YDVtlSLGDGLR------PG~iaDA~D~AQ~-----~EL~~LGEL~krA~e~gVQVMIE 420 (667)
|=|+- ..++.+-++.+..++-|.+|..+. +=.-.++-|-.|+ .-+...-+++..|..+|++||+=
T Consensus 238 EeP~~~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h 314 (404)
T PRK15072 238 EDPTPAENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSH 314 (404)
T ss_pred ECCCCccCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceeec
Confidence 44553 467888889999999999998762 1011223333332 12233336677899999999973
No 186
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=36.75 E-value=70 Score=35.60 Aligned_cols=206 Identities=17% Similarity=0.277 Sum_probs=130.0
Q ss_pred eEeecCCceeEeeccccCCCCCChHHHHHHHHHHHHhCCcEe----eecCCCCChHHHHHHHHhcCCCCcccchhhhHHH
Q 005965 213 MIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV----MDLSTGRHIHETREWILRNSAVPVGTVPIYQALE 288 (667)
Q Consensus 213 ~~IG~gl~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADtV----MDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~ 288 (667)
+.||-+--+-|-.= |..++.|++.-++....-.++|+|-| -|.-....|.+|++. +++|+
T Consensus 20 v~iGg~~Pi~VQSM--t~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~----~~iPl---------- 83 (360)
T PRK00366 20 VPIGGDAPIVVQSM--TNTDTADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQ----LPVPL---------- 83 (360)
T ss_pred EeECCCCcEEEEec--CCCCchhHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHc----CCCCE----------
Confidence 34444544444322 56678999999999999999999954 555555555555554 45543
Q ss_pred HhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHH
Q 005965 289 KVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILD 368 (667)
Q Consensus 289 k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ile 368 (667)
+.|+--|- ....+.++.|||-+-|-.|= . |+ .-++|.++.+
T Consensus 84 -----vADIHFd~--~lAl~a~~~G~~~iRINPGN-i-----------------g~--------------~~~~v~~vv~ 124 (360)
T PRK00366 84 -----VADIHFDY--RLALAAAEAGADALRINPGN-I-----------------GK--------------RDERVREVVE 124 (360)
T ss_pred -----EEecCCCH--HHHHHHHHhCCCEEEECCCC-C-----------------Cc--------------hHHHHHHHHH
Confidence 12222221 34556788999999877762 1 11 2478999999
Q ss_pred HHhHhceeEeccCCCCCCCccCC--------CcHHHHHHHHHHHHHHHHHHhcCCe---EEeeCCCCCCCCchHHHHHHH
Q 005965 369 ICNQYDVALSIGDGLRPGSIYDA--------NDTAQFAELLTQGELTRRAWDKDVQ---VMNEGPGHIPMHKIPENMQKQ 437 (667)
Q Consensus 369 I~k~YDVtlSLGDGLRPG~iaDA--------~D~AQ~~EL~~LGEL~krA~e~gVQ---VMIEGPGHVPl~~I~~Nv~lq 437 (667)
.||+|++.+=+| .=-||+..- +-+|-++- --+-++.+.+.|-. +-++ -+=+...|++|-.+.
T Consensus 125 ~ak~~~ipIRIG--vN~GSL~~~~~~~yg~~t~eamveS---Al~~~~~le~~~f~~iviS~K--sS~v~~~i~ayrlla 197 (360)
T PRK00366 125 AAKDYGIPIRIG--VNAGSLEKDLLEKYGEPTPEALVES---ALRHAKILEELGFDDIKISVK--ASDVQDLIAAYRLLA 197 (360)
T ss_pred HHHHCCCCEEEe--cCCccChHHHHHHcCCCCHHHHHHH---HHHHHHHHHHCCCCcEEEEEE--cCCHHHHHHHHHHHH
Confidence 999999998775 445665311 11111111 11233444455443 3333 344566788998888
Q ss_pred HHhcCCCCccccCccccccCCCchhH---HHhHHHHHhhhcccceeeecCc
Q 005965 438 LEWCNEAPFYTLGPLTTDIAPGYDHI---TSAIGAANIGALGTALLCYVTP 485 (667)
Q Consensus 438 k~lC~~APfYvLGPLvTDIApGYDHI---tsAIGaA~aa~~GadfLCYVTP 485 (667)
++ |+ -||. ==||--+++.+=+ +.+||..+.---|-.+-.-+|.
T Consensus 198 ~~-~d-yPLH---lGvTEAG~~~~G~iKSa~gig~LL~~GIGDTiRVSLt~ 243 (360)
T PRK00366 198 KR-CD-YPLH---LGVTEAGMGFKGTVKSAAGLGALLQEGIGDTIRVSLTA 243 (360)
T ss_pred hc-CC-CCce---ecccCCCCCCCceehhHHHHHHHHHhcCCCeEEEeCCC
Confidence 66 54 4443 3388888888854 5678888888888888888774
No 187
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=36.27 E-value=60 Score=32.85 Aligned_cols=56 Identities=23% Similarity=0.153 Sum_probs=44.3
Q ss_pred hhHHHHHHHHhHh---------ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCch
Q 005965 361 EHWDEILDICNQY---------DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKI 430 (667)
Q Consensus 361 e~FD~ileI~k~Y---------DVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I 430 (667)
--.|+|++.++++ .||||=|+-+ .|.. -+-+|.+++++.|+.+-||=-|++|...+
T Consensus 19 ~t~eel~~~~~~~~~f~~~sggGVt~SGGEPl-----------lq~~---fl~~l~~~~k~~gi~~~leTnG~~~~~~~ 83 (213)
T PRK10076 19 ITLDALEREVMKDDIFFRTSGGGVTLSGGEVL-----------MQAE---FATRFLQRLRLWGVSCAIETAGDAPASKL 83 (213)
T ss_pred cCHHHHHHHHHhhhHhhcCCCCEEEEeCchHH-----------cCHH---HHHHHHHHHHHcCCCEEEECCCCCCHHHH
Confidence 3579999999987 8999999864 3432 34567778889999999999999996544
No 188
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=36.02 E-value=30 Score=33.87 Aligned_cols=111 Identities=9% Similarity=0.089 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCCcEee-ecCCCCChHHHHHHHHhcCC---C--CcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 005965 240 VYKVQWATMWGADTVM-DLSTGRHIHETREWILRNSA---V--PVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (667)
Q Consensus 240 veKl~~A~~~GADtVM-DLSTGgdi~~~R~~Il~nsp---v--PVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqG 313 (667)
++.++.++++|||.|| .-+.-.|.+.+++.. +... + ++. ++..+.+.+ ++ .+.+.....+.+++-.+.|
T Consensus 85 ~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~-~~~g~~~i~~sid-~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~g 159 (234)
T cd04732 85 LEDIERLLDLGVSRVIIGTAAVKNPELVKELL-KEYGGERIVVGLD-AKDGKVATK-GW--LETSEVSLEELAKRFEELG 159 (234)
T ss_pred HHHHHHHHHcCCCEEEECchHHhChHHHHHHH-HHcCCceEEEEEE-eeCCEEEEC-CC--eeecCCCHHHHHHHHHHcC
Confidence 5667777789999987 333334544444433 2221 1 111 111111111 11 1223334556666677889
Q ss_pred CCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCC
Q 005965 314 VDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRP 385 (667)
Q Consensus 314 VDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRP 385 (667)
+|.+++|. ++++ |. ...| +|+-|-++++..++.+-.+=|+|.
T Consensus 160 a~~iii~~-~~~~----------------g~----------~~g~---~~~~i~~i~~~~~ipvi~~GGi~~ 201 (234)
T cd04732 160 VKAIIYTD-ISRD----------------GT----------LSGP---NFELYKELAAATGIPVIASGGVSS 201 (234)
T ss_pred CCEEEEEe-ecCC----------------Cc----------cCCC---CHHHHHHHHHhcCCCEEEecCCCC
Confidence 99999984 3221 11 0111 255566666666777777777763
No 189
>cd08616 PI-PLCXD1c Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing 1. This subfamily corresponds to the catalytic domain present in a group of phosphatidylinositol-specific phospholipase C X domain containing 1 (PI-PLCXD1), 2 (PI-PLCXD2) and 3 (PI-PLCXD3), which are bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) sequence homologs found in vertebrates. The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, members in this group contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to
Probab=36.01 E-value=1.6e+02 Score=31.16 Aligned_cols=93 Identities=25% Similarity=0.308 Sum_probs=59.5
Q ss_pred HHHHHHhcCCCEEEEeccccc--cccccccCcccCccccccHH------HHHHHHHcCCc-------Cch---hhhHHHH
Q 005965 305 TLIEQAEQGVDYFTIHAGVLL--RYIPLTAKRMTGIVSRGGSI------HAKWCLAYHKE-------NFA---YEHWDEI 366 (667)
Q Consensus 305 ~ieeQAeqGVDfmTIHaGv~~--~~l~~~~~RvtgIVSRGGSi------~a~Wml~h~~E-------NpL---Ye~FD~i 366 (667)
.|.+|.+.||-||-+-.+... ..+-... |+. |+.+ +..|+..|.+| ++. -++++++
T Consensus 63 ~i~~QL~~GiRyfDlRv~~~~~~~~~~~~H----g~~--~~~~~~~L~~i~~fl~~~p~Evvil~~~~~~~~~~~~~~~l 136 (290)
T cd08616 63 TITEQLEAGIRYFDLRIATKPKDNDLYFVH----GLY--GILVKEILEEINDFLTEHPKEVVILDFNHFYGMTEEDHEKL 136 (290)
T ss_pred cHHHHHhcCceEEEEEecccCCCCcEEEEE----ecc--chhHHHHHHHHHHHHHHCCCcEEEEEEEccCCCCHHHHHHH
Confidence 578999999999999887654 2222222 222 2233 45699888766 222 2567788
Q ss_pred HHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEee
Q 005965 367 LDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNE 420 (667)
Q Consensus 367 leI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIE 420 (667)
.+.+++. +||-|.|.+. |.. -.+|++|. +.|=||+|=
T Consensus 137 ~~~l~~~-----fg~~l~~~~~-~~~-------~~tL~~l~----~~~krVIi~ 173 (290)
T cd08616 137 LKMIKSI-----FGKKLCPRDP-DLL-------NVTLEYLW----EKGYQVIVF 173 (290)
T ss_pred HHHHHHH-----hcccccCCCC-CcC-------cCcHHHHH----hCCCEEEEE
Confidence 8888773 7999888654 211 24676664 477788874
No 190
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=36.01 E-value=4.2e+02 Score=28.68 Aligned_cols=159 Identities=19% Similarity=0.276 Sum_probs=88.0
Q ss_pred ChHHHHHHHHHHH-HhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHH-----
Q 005965 235 SIEEEVYKVQWAT-MWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIE----- 308 (667)
Q Consensus 235 ~ieeEveKl~~A~-~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~iee----- 308 (667)
+.-..++|+.-++ ++|+-.++-|+-+|-....-...+.-|+ ||... ....+..||.|++.++|+.
T Consensus 78 ~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~-----~~~~~----~~~~p~~mt~eeI~~ii~~f~~aA 148 (337)
T PRK13523 78 EHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSA-----IPFDE----KSKTPVEMTKEQIKETVLAFKQAA 148 (337)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCC-----CCCCC----CCCCCCcCCHHHHHHHHHHHHHHH
Confidence 4556677765554 5688899999888743210000111122 22211 1234578999988887764
Q ss_pred --HHhcCCCEEEEecc---ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc--eeEeccC
Q 005965 309 --QAEQGVDYFTIHAG---VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD--VALSIGD 381 (667)
Q Consensus 309 --QAeqGVDfmTIHaG---v~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YD--VtlSLGD 381 (667)
-.+.|.|.+=||+| +.-+.+....++.+. ..|||+. .-| -|+.|-.|.|-+-+ .+. |-||.-|
T Consensus 149 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD--~yGGsle-nR~------Rf~~eii~~ir~~~-~~~v~vRis~~d 218 (337)
T PRK13523 149 VRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTD--EYGGSPE-NRY------RFLREIIDAVKEVW-DGPLFVRISASD 218 (337)
T ss_pred HHHHHcCCCEEEEccccchHHHHhcCCccCCcCC--CCCCCHH-HHH------HHHHHHHHHHHHhc-CCCeEEEecccc
Confidence 34579999999998 455555543444443 2689943 333 35666666666554 333 3455544
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCC
Q 005965 382 GLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPG 423 (667)
Q Consensus 382 GLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPG 423 (667)
.+ +| ..+ ++|. .+++++.-+.||...-=..|
T Consensus 219 ~~-~~----G~~---~~e~---~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 219 YH-PG----GLT---VQDY---VQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred cC-CC----CCC---HHHH---HHHHHHHHHcCCCEEEeCCC
Confidence 43 22 222 3333 34555666778875533334
No 191
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=35.87 E-value=1.1e+02 Score=32.10 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCCCEEEEec
Q 005965 302 FRDTLIEQAEQGVDYFTIHA 321 (667)
Q Consensus 302 ~~d~ieeQAeqGVDfmTIHa 321 (667)
..+.+..-.+.|||++|||.
T Consensus 149 ~~~~a~~l~~~G~d~i~vh~ 168 (319)
T TIGR00737 149 AVEAARIAEDAGAQAVTLHG 168 (319)
T ss_pred HHHHHHHHHHhCCCEEEEEc
Confidence 33444444567999999995
No 192
>PRK09875 putative hydrolase; Provisional
Probab=35.86 E-value=3.5e+02 Score=28.93 Aligned_cols=88 Identities=17% Similarity=0.241 Sum_probs=59.9
Q ss_pred CChHHHHHHHHHHHHhCCcEeeecCC---CCChHHHHHHHHhcCCCCcc-cchhhhHHHHhcCCCCCCCHHHHHHHHHHH
Q 005965 234 SSIEEEVYKVQWATMWGADTVMDLST---GRHIHETREWILRNSAVPVG-TVPIYQALEKVDGIAENLSWEVFRDTLIEQ 309 (667)
Q Consensus 234 ~~ieeEveKl~~A~~~GADtVMDLST---Ggdi~~~R~~Il~nspvPVG-TVPIYqAl~k~~g~~~~lt~e~~~d~ieeQ 309 (667)
.+++.=++.++.-.++|-.||.|.++ |.|...+|+-- +.|.|.|= +-=.|..-. .-..+..++.|+|-+.+.+.
T Consensus 31 ~~~~~~~~el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is-~~tgv~Iv~~TG~y~~~~-~p~~~~~~~~e~la~~~i~e 108 (292)
T PRK09875 31 DQYAFICQEMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVM-RETGINVVACTGYYQDAF-FPEHVATRSVQELAQEMVDE 108 (292)
T ss_pred ccHHHHHHHHHHHHHhCCCeEEecCCCccCcCHHHHHHHH-HHhCCcEEEcCcCCCCcc-CCHHHhcCCHHHHHHHHHHH
Confidence 45555566666677889999999876 67888887644 55766651 112232110 01224578899999999999
Q ss_pred HhcCCCEEEEeccc
Q 005965 310 AEQGVDYFTIHAGV 323 (667)
Q Consensus 310 AeqGVDfmTIHaGv 323 (667)
.++|+|---|-|||
T Consensus 109 i~~Gi~gt~ikaGv 122 (292)
T PRK09875 109 IEQGIDGTELKAGI 122 (292)
T ss_pred HHHhhccCCCcccE
Confidence 99999976677776
No 193
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.73 E-value=76 Score=34.15 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 005965 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (667)
Q Consensus 241 eKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIH 320 (667)
|-+..|+++|||.|| | ..-+.+++++.+-..- +.+. ++-.||. | .++|++-|+-||||+.+=
T Consensus 208 eea~~a~~agaDiIm-L-Dnmspe~l~~av~~~~----~~~~----leaSGGI----~----~~ni~~yA~tGVD~Is~g 269 (290)
T PRK06559 208 AAAEEAAAAGADIIM-L-DNMSLEQIEQAITLIA----GRSR----IECSGNI----D----MTTISRFRGLAIDYVSSG 269 (290)
T ss_pred HHHHHHHHcCCCEEE-E-CCCCHHHHHHHHHHhc----CceE----EEEECCC----C----HHHHHHHHhcCCCEEEeC
Confidence 455678899999999 4 4557888888774321 2221 2222332 2 378888999999999765
Q ss_pred c
Q 005965 321 A 321 (667)
Q Consensus 321 a 321 (667)
+
T Consensus 270 a 270 (290)
T PRK06559 270 S 270 (290)
T ss_pred c
Confidence 4
No 194
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=35.61 E-value=1.6e+02 Score=29.03 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=38.7
Q ss_pred HHHHHHHhCCcEee-ecC-----CCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005965 242 KVQWATMWGADTVM-DLS-----TGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVD 315 (667)
Q Consensus 242 Kl~~A~~~GADtVM-DLS-----TGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVD 315 (667)
.++.|.++|||.|. |+. ++..+.++.+.+-++..+|+.. + -.|.+++ ++-.+.|+|
T Consensus 80 ~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~-~-------------v~t~ee~----~~a~~~G~d 141 (221)
T PRK01130 80 EVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMA-D-------------CSTLEEG----LAAQKLGFD 141 (221)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEE-e-------------CCCHHHH----HHHHHcCCC
Confidence 46788999999664 554 2367777777775534455431 1 1245543 456678999
Q ss_pred EEEEe
Q 005965 316 YFTIH 320 (667)
Q Consensus 316 fmTIH 320 (667)
|+.++
T Consensus 142 ~i~~~ 146 (221)
T PRK01130 142 FIGTT 146 (221)
T ss_pred EEEcC
Confidence 99763
No 195
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=35.19 E-value=38 Score=28.06 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhc
Q 005965 174 EEMLYCATREKLDPEFVRAEVAR 196 (667)
Q Consensus 174 ~EMe~VA~~E~i~pE~vR~~VA~ 196 (667)
-|++|.|++-|+|+|.|++.|++
T Consensus 21 ~ev~ywa~~~gvt~~~L~~AV~~ 43 (57)
T PF12244_consen 21 YEVRYWAKRFGVTEEQLREAVRA 43 (57)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHH
Confidence 48999999999999999999974
No 196
>PRK08417 dihydroorotase; Provisional
Probab=35.16 E-value=94 Score=33.42 Aligned_cols=60 Identities=20% Similarity=0.120 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhh
Q 005965 395 AQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGA 474 (667)
Q Consensus 395 AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~ 474 (667)
.-++|...+.+..+.|++.|+++ +-.|++++=+--++..
T Consensus 176 p~~aE~~~v~~~~~la~~~~~~l-----------------------------------------hi~hvS~~~~~~~i~~ 214 (386)
T PRK08417 176 PSIAETKEVAKMKELAKFYKNKV-----------------------------------------LFDTLALPRSLELLDK 214 (386)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCE-----------------------------------------EEEeCCCHHHHHHHHH
Confidence 34678888888888888888776 5578888777765533
Q ss_pred ---cccceeeecCcccccCCCChhHH
Q 005965 475 ---LGTALLCYVTPKEHLGLPNRDDV 497 (667)
Q Consensus 475 ---~GadfLCYVTPaEHLgLP~~eDV 497 (667)
-|..+-|=|||- ||-|- .+|+
T Consensus 215 ak~~g~~vt~ev~ph-~L~l~-~~~~ 238 (386)
T PRK08417 215 FKSEGEKLLKEVSIH-HLILD-DSAC 238 (386)
T ss_pred HHHCCCCEEEEechH-HHeeC-HHHh
Confidence 588899999984 78775 3455
No 197
>PRK05927 hypothetical protein; Provisional
Probab=34.91 E-value=38 Score=36.62 Aligned_cols=49 Identities=18% Similarity=0.124 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHHHHHHHHHhCCcEeee
Q 005965 184 KLDPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMD 256 (667)
Q Consensus 184 ~i~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADtVMD 256 (667)
..+++...+-||--|+++| |++|+..-.+.. =.+..+.|+.+|||-+|=
T Consensus 255 ~~s~~e~Lr~iAv~Rl~lp-~~~~i~~~w~~~-----------------------G~~~~q~~L~~GanDlgg 303 (350)
T PRK05927 255 QASPELYYRILAVARIFLD-NFDHIAASWFGE-----------------------GKEEGAKGLHYGADDFGG 303 (350)
T ss_pred CCCHHHHHHHHHHHHHhCC-CCCcccCCcccc-----------------------CHHHHHHHHhCCCccccC
Confidence 5899999999999999999 788843322211 124678899999998773
No 198
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=34.31 E-value=4.6e+02 Score=27.49 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=76.4
Q ss_pred CChHHHHHHHHHHHHhCCcEeeecCCCCCh----HHHH---HHHHhcCCCCcccchhhh------HHHHhcC--CCCCCC
Q 005965 234 SSIEEEVYKVQWATMWGADTVMDLSTGRHI----HETR---EWILRNSAVPVGTVPIYQ------ALEKVDG--IAENLS 298 (667)
Q Consensus 234 ~~ieeEveKl~~A~~~GADtVMDLSTGgdi----~~~R---~~Il~nspvPVGTVPIYq------Al~k~~g--~~~~lt 298 (667)
.|.+.=++++..-++.|||-| |+-.+-.- ..++ +.|.+.+++|+ .|=-|. |++.+.| -+-+++
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiI-DVg~~~~~~eE~~r~~~~v~~l~~~~~~pl-sIDT~~~~v~eaaL~~~~G~~iINsIs 99 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYL-DVNAGTAVEEEPETMEWLVETVQEVVDVPL-CIDSPNPAAIEAGLKVAKGPPLINSVS 99 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEE-EECCCCCchhHHHHHHHHHHHHHHhCCCCE-EEeCCCHHHHHHHHHhCCCCCEEEeCC
Confidence 355555666777788899854 77655332 2222 22333334443 222222 3333223 122333
Q ss_pred H-----HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh
Q 005965 299 W-----EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY 373 (667)
Q Consensus 299 ~-----e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~Y 373 (667)
. +.++..+ ++-|+.++.+|.. -+-+|.+... -.+.|.++++.|.++
T Consensus 100 ~~~~~~~~~~~l~---~~~g~~vv~m~~~--~~g~P~t~~~------------------------~~~~l~~~v~~a~~~ 150 (261)
T PRK07535 100 AEGEKLEVVLPLV---KKYNAPVVALTMD--DTGIPKDAED------------------------RLAVAKELVEKADEY 150 (261)
T ss_pred CCCccCHHHHHHH---HHhCCCEEEEecC--CCCCCCCHHH------------------------HHHHHHHHHHHHHHc
Confidence 3 3344433 4569999988852 1123332111 168889999999999
Q ss_pred ce---eEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhc-CCeEEe
Q 005965 374 DV---ALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDK-DVQVMN 419 (667)
Q Consensus 374 DV---tlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~-gVQVMI 419 (667)
.| -|=|==|+=|- +.+..|..|++..-+..+. .. |+.+++
T Consensus 151 GI~~~~IilDPgi~~~----~~~~~~~~~~l~~i~~l~~--~~pg~p~l~ 194 (261)
T PRK07535 151 GIPPEDIYIDPLVLPL----SAAQDAGPEVLETIRRIKE--LYPKVHTTC 194 (261)
T ss_pred CCCHhHEEEeCCCCcc----cCChHHHHHHHHHHHHHHH--hCCCCCEEE
Confidence 88 45554444431 2334455554433333332 22 888876
No 199
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=34.09 E-value=1.8e+02 Score=31.38 Aligned_cols=112 Identities=21% Similarity=0.164 Sum_probs=80.6
Q ss_pred HHcCCCHHHHHHHHhc---ceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHHHHHHHH-HhCCcEeee
Q 005965 181 TREKLDPEFVRAEVAR---GRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWAT-MWGADTVMD 256 (667)
Q Consensus 181 ~~E~i~pE~vR~~VA~---Gr~VIPaN~nh~~~~p~~IG~gl~tKVNANIGtS~~~~~ieeEveKl~~A~-~~GADtVMD 256 (667)
.-.|+++|.|.+-+++ +..|=|+|.|-| ...++ +...+.|+|+...+ +.|+...+.
T Consensus 135 av~gl~~e~v~~~~~~~~~~~~v~iaN~N~~-~QiVI-------------------sG~~~ale~a~~~~~~~g~kr~i~ 194 (310)
T COG0331 135 AVLGLDDEQVEKACEEAAQGTVVEIANYNSP-GQIVI-------------------SGTKEALEKAAEILKEAGAKRAIP 194 (310)
T ss_pred HHcCCCHHHHHHHHHHhccCCeEEEeeeCCC-CcEEE-------------------ECCHHHHHHHHHHHHHhhhhhhcc
Confidence 3356788888776654 447889998886 44443 34567788876544 467787777
Q ss_pred cCCCCChHH---------HHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEE
Q 005965 257 LSTGRHIHE---------TREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYF 317 (667)
Q Consensus 257 LSTGgdi~~---------~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfm 317 (667)
|..++..|. ++ ..|.+.......+|+++-.... ..++.+.+++.+.+|.-.-|+|+
T Consensus 195 l~vs~pfHs~lm~pa~~~~~-~~l~~~~~~~~~ipvi~n~~~~----~~~~~~~i~~~L~~q~~~pVrW~ 259 (310)
T COG0331 195 LPVSGPFHSPLMKPAADELA-EALEKVRFSDPLVPVISNVDAK----PVLDGEEIRELLAKQLTSPVRWT 259 (310)
T ss_pred cCCCchhhhhhhHHHHHHHH-HHHHhcCCCCccceeeeccccc----cccCHHHHHHHHHHHhcCCeeHH
Confidence 999999875 44 4467778888999999865432 22788999999999998888873
No 200
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=33.92 E-value=2.1e+02 Score=30.80 Aligned_cols=77 Identities=16% Similarity=0.127 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 005965 235 SIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (667)
Q Consensus 235 ~ieeEveKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGV 314 (667)
++++=++.++...++|||.|+=-+ -.+++++|+.. +..++|+=..++ . ++....++. ++-.+-||
T Consensus 164 g~deAI~Ra~aY~eAGAD~ifi~~-~~~~~~i~~~~-~~~~~Pl~~n~~-----~-~~~~p~~s~-------~~L~~lGv 228 (292)
T PRK11320 164 GLDAAIERAQAYVEAGADMIFPEA-MTELEMYRRFA-DAVKVPILANIT-----E-FGATPLFTT-------EELASAGV 228 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecC-CCCHHHHHHHH-HhcCCCEEEEec-----c-CCCCCCCCH-------HHHHHcCC
Confidence 589999999999999999999554 34788887644 455555422221 1 233334454 44457799
Q ss_pred CEEEEecccccc
Q 005965 315 DYFTIHAGVLLR 326 (667)
Q Consensus 315 DfmTIHaGv~~~ 326 (667)
.++++-....+.
T Consensus 229 ~~v~~~~~~~~a 240 (292)
T PRK11320 229 AMVLYPLSAFRA 240 (292)
T ss_pred cEEEEChHHHHH
Confidence 999887655433
No 201
>PRK13317 pantothenate kinase; Provisional
Probab=33.65 E-value=2.1e+02 Score=30.27 Aligned_cols=129 Identities=16% Similarity=0.232 Sum_probs=64.2
Q ss_pred ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc---eeEeccCCCCC--CCccCCCcHHHHHHHH----
Q 005965 331 TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD---VALSIGDGLRP--GSIYDANDTAQFAELL---- 401 (667)
Q Consensus 331 ~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YD---VtlSLGDGLRP--G~iaDA~D~AQ~~EL~---- 401 (667)
...|+.|.===|| .+-+-+..= +| -..||+|++++++.| +-+.++|=-.- .-+.-++=.+-|+|++
T Consensus 116 ~~~r~~Gt~iGGg-t~~gL~~lL--~~--~~~~~el~~la~~g~~~~~Dl~v~dIy~~~~~~l~i~s~csvFakv~~l~~ 190 (277)
T PRK13317 116 SQRRVGGTGIGGG-TIQGLSKLL--TN--ISDYEQLIELAKHGDRNNIDLKVGDIYKGPLPPIPGDLTASNFGKVLHHLD 190 (277)
T ss_pred ceEEEccccccHH-HHHHHHHHH--hC--CCCHHHHHHHHhcCCCccccceeccccCCCCCCCCCceeEehhhhhhhhhc
Confidence 4578888744444 444433221 11 167999999999986 44455442210 0011122223344432
Q ss_pred ------------------HHHHHHHH-HHhcCCeEEeeCCCCCCCCc-hHHHHHHHHHhcCCCCccccCccccccCCCch
Q 005965 402 ------------------TQGELTRR-AWDKDVQVMNEGPGHIPMHK-IPENMQKQLEWCNEAPFYTLGPLTTDIAPGYD 461 (667)
Q Consensus 402 ------------------~LGEL~kr-A~e~gVQVMIEGPGHVPl~~-I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYD 461 (667)
+++.|+.. |+..+++-.+=.-|.+.-|. +..-+....++.+ ..++ -|-+.
T Consensus 191 ~g~~~eDIaasl~~~v~~~I~~lA~~~ar~~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~-~~~~---------~p~~~ 260 (277)
T PRK13317 191 SEFTSSDILAGVIGLVGEVITTLSIQAAREKNIENIVYIGSTLTNNPLLQEIIESYTKLRN-CTPI---------FLENG 260 (277)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECcccccCHHHHHHHHHHHhcCC-ceEE---------ecCCC
Confidence 24444433 44455554433333444433 2222332223222 2222 26678
Q ss_pred hHHHhHHHHHhhh
Q 005965 462 HITSAIGAANIGA 474 (667)
Q Consensus 462 HItsAIGaA~aa~ 474 (667)
+..+|||||+.++
T Consensus 261 ~~~gAlGAaL~a~ 273 (277)
T PRK13317 261 GYSGAIGALLLAT 273 (277)
T ss_pred chhHHHHHHHHhh
Confidence 8999999998875
No 202
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=33.59 E-value=34 Score=36.31 Aligned_cols=80 Identities=14% Similarity=0.107 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCC
Q 005965 235 SIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGV 314 (667)
Q Consensus 235 ~ieeEveKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGV 314 (667)
++++=++.++...++|||.|+=-+ -.+.+++++ +.+..++|+=..++ . +|....+| +++-.+-||
T Consensus 159 g~deAI~Ra~ay~~AGAD~vfi~g-~~~~e~i~~-~~~~i~~Pl~~n~~-----~-~~~~p~~s-------~~eL~~lGv 223 (285)
T TIGR02317 159 GLDAAIERAKAYVEAGADMIFPEA-LTSLEEFRQ-FAKAVKVPLLANMT-----E-FGKTPLFT-------ADELREAGY 223 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC-CCCHHHHHH-HHHhcCCCEEEEec-----c-CCCCCCCC-------HHHHHHcCC
Confidence 589999999999999999999543 236677754 44555555521111 1 12223344 444567899
Q ss_pred CEEEEeccccccccc
Q 005965 315 DYFTIHAGVLLRYIP 329 (667)
Q Consensus 315 DfmTIHaGv~~~~l~ 329 (667)
.++.+-....+..+.
T Consensus 224 ~~v~~~~~~~~aa~~ 238 (285)
T TIGR02317 224 KMVIYPVTAFRAMNK 238 (285)
T ss_pred cEEEEchHHHHHHHH
Confidence 999988766554444
No 203
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=33.43 E-value=4.7e+02 Score=25.61 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCeEEe-eCC---CCCCCC--chHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccc
Q 005965 405 ELTRRAWDKDVQVMN-EGP---GHIPMH--KIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTA 478 (667)
Q Consensus 405 EL~krA~e~gVQVMI-EGP---GHVPl~--~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad 478 (667)
+.++++.++|+..++ .|+ ||.--. ...+.++.-++.+ +-|++.-|=+.+ .+++.-++- +|||
T Consensus 113 ~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-~~Pvi~~GGI~~-----~~~v~~~l~------~Gad 180 (236)
T cd04730 113 EEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIAAGGIAD-----GRGIAAALA------LGAD 180 (236)
T ss_pred HHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-CCCEEEECCCCC-----HHHHHHHHH------cCCc
Confidence 444556667777654 443 554321 2334444444444 479888886544 366766662 5788
Q ss_pred eeeecCc-ccccCCCChhHHHHHH
Q 005965 479 LLCYVTP-KEHLGLPNRDDVKAGV 501 (667)
Q Consensus 479 fLCYVTP-aEHLgLP~~eDVreGV 501 (667)
.++.-|. ..+...|...++|+=+
T Consensus 181 gV~vgS~l~~~~e~~~~~~~~~~~ 204 (236)
T cd04730 181 GVQMGTRFLATEESGASPAYKQAL 204 (236)
T ss_pred EEEEchhhhcCcccCCCHHHHHHH
Confidence 7776654 2344556666666544
No 204
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.32 E-value=99 Score=32.85 Aligned_cols=63 Identities=35% Similarity=0.419 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 005965 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (667)
Q Consensus 241 eKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIH 320 (667)
+-+..|.++|||-|| | ..-.++.+++++- ..+ +.+|+.-. || +|. +.+.+-++-|||++.+=
T Consensus 200 eea~eA~~~gaD~I~-L-D~~~~e~l~~~v~-~~~---~~i~leAs----GG----It~----~ni~~~a~tGvD~Isvg 261 (277)
T PRK05742 200 DELRQALAAGADIVM-L-DELSLDDMREAVR-LTA---GRAKLEAS----GG----INE----STLRVIAETGVDYISIG 261 (277)
T ss_pred HHHHHHHHcCCCEEE-E-CCCCHHHHHHHHH-HhC---CCCcEEEE----CC----CCH----HHHHHHHHcCCCEEEEC
Confidence 345668899999998 4 3457778887662 211 45665432 33 343 56677789999999875
Q ss_pred c
Q 005965 321 A 321 (667)
Q Consensus 321 a 321 (667)
+
T Consensus 262 ~ 262 (277)
T PRK05742 262 A 262 (277)
T ss_pred h
Confidence 4
No 205
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=33.31 E-value=45 Score=35.66 Aligned_cols=70 Identities=20% Similarity=0.308 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCCEEEEeccc----cccccccccCcccCccccccHHHHHHHHHcCCcCchh--hhHHHHHHHHhHhce
Q 005965 302 FRDTLIEQAEQGVDYFTIHAGV----LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY--EHWDEILDICNQYDV 375 (667)
Q Consensus 302 ~~d~ieeQAeqGVDfmTIHaGv----~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLY--e~FD~ileI~k~YDV 375 (667)
++.+++.-.+.|+..+.+|-|. .-++++++..-+.++.++||++| ...+-+|+- +.++++++.+++|++
T Consensus 18 i~~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~L-----gtsR~~~~~~~~~~~~~~~~l~~~~I 92 (301)
T TIGR02482 18 IRAVVRTAIYHGFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTIL-----GTARCPEFKTEEGRQKAVENLKKLGI 92 (301)
T ss_pred HHHHHHHHHHCCCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCcee-----ccCCCCccCCHHHHHHHHHHHHHcCC
Confidence 4455555556789999999886 34566667777888999999976 334444543 679999999999976
Q ss_pred e
Q 005965 376 A 376 (667)
Q Consensus 376 t 376 (667)
.
T Consensus 93 d 93 (301)
T TIGR02482 93 E 93 (301)
T ss_pred C
Confidence 4
No 206
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=32.92 E-value=3.1e+02 Score=30.12 Aligned_cols=155 Identities=12% Similarity=0.090 Sum_probs=92.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEec--ccccccccc--ccCcccCc---------cccccHHHHHHHHHc-----------
Q 005965 298 SWEVFRDTLIEQAEQGVDYFTIHA--GVLLRYIPL--TAKRMTGI---------VSRGGSIHAKWCLAY----------- 353 (667)
Q Consensus 298 t~e~~~d~ieeQAeqGVDfmTIHa--Gv~~~~l~~--~~~RvtgI---------VSRGGSi~a~Wml~h----------- 353 (667)
.-++|...|.+.+..|.|-+-+|. |+... ++. ..+=++++ ++|....+..|-..+
T Consensus 47 ~l~~~K~lv~~~l~~~asaILld~~yG~~a~-~~~~~~~GLil~~e~tg~d~t~~gr~~~~~~~~sve~a~~~GAdAVk~ 125 (340)
T PRK12858 47 DLVDFKLAVSEALTPYASAILLDPEYGLPAA-KVRDPNCGLLLSYEKTGYDATAPGRLPDLLDNWSVRRIKEAGADAVKL 125 (340)
T ss_pred hHHHHHHHHHHHHhhCCCEEEEccccChhhh-cccCCCCCeEEEecccccccCCCCCCccccccccHHHHHHcCCCEEEE
Confidence 457888899999999999999988 76554 221 22333331 122334455564444
Q ss_pred -----CC-----cCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHH--HHHHHHHHHHHh--cCCeE-E
Q 005965 354 -----HK-----ENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAEL--LTQGELTRRAWD--KDVQV-M 418 (667)
Q Consensus 354 -----~~-----ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL--~~LGEL~krA~e--~gVQV-M 418 (667)
.. |+--.+...+|.+-|++||+-|=|-==..|.-..|.++ .-+++. ..+.+.++++-+ .||-| =
T Consensus 126 lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~-~~~a~~~p~~V~~a~r~~~~~elGaDvlK 204 (340)
T PRK12858 126 LLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKA-EEFAKVKPEKVIKTMEEFSKPRYGVDVLK 204 (340)
T ss_pred EEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCcccccc-ccccccCHHHHHHHHHHHhhhccCCeEEE
Confidence 22 22344568888999999998876510012222222222 111111 256677888884 88874 4
Q ss_pred eeCCCCC-------------CCCchHHHHHHHHHhcCCCCccccCccccc
Q 005965 419 NEGPGHI-------------PMHKIPENMQKQLEWCNEAPFYTLGPLTTD 455 (667)
Q Consensus 419 IEGPGHV-------------Pl~~I~~Nv~lqk~lC~~APfYvLGPLvTD 455 (667)
+|=||++ .-.+..+.++.|-+.|+ .||.+||==+++
T Consensus 205 ve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~-~P~vvlsgG~~~ 253 (340)
T PRK12858 205 VEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATD-LPFIFLSAGVSP 253 (340)
T ss_pred eeCCCCcccccccccccccccHHHHHHHHHHHHhhCC-CCEEEECCCCCH
Confidence 6767665 34445578888888775 899987644433
No 207
>PRK00957 methionine synthase; Provisional
Probab=32.82 E-value=80 Score=32.78 Aligned_cols=176 Identities=11% Similarity=0.121 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH-hc-e--
Q 005965 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ-YD-V-- 375 (667)
Q Consensus 300 e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~-YD-V-- 375 (667)
+.+.++|++|.+.|+|++| +--.+++.+.....++-|+- |..+..+ +....++|+.++|.++.+++++ +| +
T Consensus 36 ~ai~~~v~~q~~~Gld~vt-dGe~r~~~~~~f~~~l~G~~--~~~vvg~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~v 110 (305)
T PRK00957 36 PAIEEAVADQVKAGIDIIS-DGQVRGDMVEIFASNMPGFD--GKRVIGR--VEPPAKPITLKDLKYAKKVAKKKDPNKGV 110 (305)
T ss_pred HHHHHHHHHHHHhCCCeec-CCCccCchHHHHHhcCCCcc--CCeEEEe--ecCCCCCCcHHHHHHHHHHHhccCCCCce
Confidence 4577899999999999985 44554455444556777762 2222100 0001257999999999999875 43 1
Q ss_pred e------EeccCCCCCCCccCCC-cHHHHHH-HHHHHHHHHHHHhcCCe-EEeeCCCCC-CCCchHHHHHHHHHhcCCCC
Q 005965 376 A------LSIGDGLRPGSIYDAN-DTAQFAE-LLTQGELTRRAWDKDVQ-VMNEGPGHI-PMHKIPENMQKQLEWCNEAP 445 (667)
Q Consensus 376 t------lSLGDGLRPG~iaDA~-D~AQ~~E-L~~LGEL~krA~e~gVQ-VMIEGPGHV-Pl~~I~~Nv~lqk~lC~~AP 445 (667)
. ++|-..++....++.. |+.-+.. +..+.+.++...++|+. |.|.=|.=. -+...+.-.+.-+++..+..
T Consensus 111 K~~i~GP~Tla~~~~~~~~y~~~~~~~~~~dla~~~~~~i~~l~~~G~~~IqiDEP~l~~~~~~~~~~~~~~~~~~~~i~ 190 (305)
T PRK00957 111 KGIITGPSTLAYSLRVEPFYSDNKDEELIYDLARALRKEAEALEKAGVAMIQIDEPILSTGAYDLEVAKKAIDIITKGLN 190 (305)
T ss_pred eEEecCHHHHHhhcccccccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEecChhhhcCCchHHHHHHHHHHHHHhhC
Confidence 1 3344445432244433 1222222 33455666667788986 355555111 12223333333344433332
Q ss_pred ccccCccccccCCCchhHHHhHHHHHhhhcccc--eeeecCccccc
Q 005965 446 FYTLGPLTTDIAPGYDHITSAIGAANIGALGTA--LLCYVTPKEHL 489 (667)
Q Consensus 446 fYvLGPLvTDIApGYDHItsAIGaA~aa~~Gad--fLCYVTPaEHL 489 (667)
.++.+-+--+|+.|...+.. .|+| .|-|+...+.|
T Consensus 191 ----~~v~lH~CG~~~~i~~~l~~-----~~vd~i~ld~~~~~~~l 227 (305)
T PRK00957 191 ----VPVAMHVCGDVSNIIDDLLK-----FNVDILDHEFASNKKNL 227 (305)
T ss_pred ----CceEEEECCCcHHHHHHHHh-----CCCCEEEEeecCCCCCH
Confidence 23444555678777666632 3444 45554444433
No 208
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=32.69 E-value=92 Score=30.09 Aligned_cols=65 Identities=22% Similarity=0.185 Sum_probs=38.0
Q ss_pred HHHHHHhCCcEee-ecCCC-CChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCC-CCHHHHHHHHHHHHhcCCCEEEE
Q 005965 243 VQWATMWGADTVM-DLSTG-RHIHETREWILRNSAVPVGTVPIYQALEKVDGIAEN-LSWEVFRDTLIEQAEQGVDYFTI 319 (667)
Q Consensus 243 l~~A~~~GADtVM-DLSTG-gdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~-lt~e~~~d~ieeQAeqGVDfmTI 319 (667)
++.+.++|||.|. ...++ .++.++-+++-+ ..+++|- + ++.....+.+++-.+.|+||+++
T Consensus 69 ~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~-~g~~~~~---------------~~~~~~t~~~~~~~~~~~g~d~v~~ 132 (206)
T TIGR03128 69 AEQAFAAGADIVTVLGVADDATIKGAVKAAKK-HGKEVQV---------------DLINVKDKVKRAKELKELGADYIGV 132 (206)
T ss_pred HHHHHHcCCCEEEEeccCCHHHHHHHHHHHHH-cCCEEEE---------------EecCCCChHHHHHHHHHcCCCEEEE
Confidence 4558899999884 22222 245666666543 3444442 2 23333444444445569999999
Q ss_pred eccc
Q 005965 320 HAGV 323 (667)
Q Consensus 320 HaGv 323 (667)
+.|.
T Consensus 133 ~pg~ 136 (206)
T TIGR03128 133 HTGL 136 (206)
T ss_pred cCCc
Confidence 8764
No 209
>PRK07328 histidinol-phosphatase; Provisional
Probab=32.33 E-value=1.1e+02 Score=31.34 Aligned_cols=136 Identities=17% Similarity=0.207 Sum_probs=81.5
Q ss_pred eecCCCCChHHHHHHHHhc--CCCCcccch------hhh--HHHHh-cCCCCCCCHHHHHHHHHHHHhc-CCCEEEEecc
Q 005965 255 MDLSTGRHIHETREWILRN--SAVPVGTVP------IYQ--ALEKV-DGIAENLSWEVFRDTLIEQAEQ-GVDYFTIHAG 322 (667)
Q Consensus 255 MDLSTGgdi~~~R~~Il~n--spvPVGTVP------IYq--Al~k~-~g~~~~lt~e~~~d~ieeQAeq-GVDfmTIHaG 322 (667)
+|..- +.++.+++ +|+. ...-||.|= ++. ..... .++ .+--++.+|+.+.+-++. .+|++ =|.+
T Consensus 87 ~~~~~-~~~~~~~~-~l~~~~~D~vigSvH~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~~~~~~~~~~~~dvl-gH~d 162 (269)
T PRK07328 87 ADYHP-GTEEFLER-LLEAYPFDYVIGSVHYLGAWGFDNPDFVAEYEERD-LDELYRRYFALVEQAARSGLFDII-GHPD 162 (269)
T ss_pred ecccC-CcHHHHHH-HHHhCCCCeEEEEEeecCCcCCCChhHHHHHhcCC-HHHHHHHHHHHHHHHHHcCCCCEe-eCcc
Confidence 56543 46777776 4455 456666652 211 11111 122 223346677777776664 56655 3776
Q ss_pred ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccC-CCCCCCccCCCcHHHHHHHH
Q 005965 323 VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGD-GLRPGSIYDANDTAQFAELL 401 (667)
Q Consensus 323 v~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGD-GLRPG~iaDA~D~AQ~~EL~ 401 (667)
.-+.+- .+ .+-++...+++|++.|+++|+.|=+=- |||-++- |..
T Consensus 163 ~i~~~~----~~--------------------~~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~----------~~y 208 (269)
T PRK07328 163 LIKKFG----HR--------------------PREDLTELYEEALDVIAAAGLALEVNTAGLRKPVG----------EIY 208 (269)
T ss_pred HHHHcC----CC--------------------CchhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCC----------CCC
Confidence 432221 10 011245778999999999999985543 7887641 234
Q ss_pred HHHHHHHHHHhcCCeEEeeCCCCCCCC
Q 005965 402 TQGELTRRAWDKDVQVMNEGPGHIPMH 428 (667)
Q Consensus 402 ~LGEL~krA~e~gVQVMIEGPGHVPl~ 428 (667)
-..++.++|.+.|+.+.|=.=-|-|-+
T Consensus 209 p~~~il~~~~~~g~~itigSDAH~~~~ 235 (269)
T PRK07328 209 PSPALLRACRERGIPVVLGSDAHRPEE 235 (269)
T ss_pred CCHHHHHHHHHcCCCEEEeCCCCCHHH
Confidence 456889999999999888776788844
No 210
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=32.19 E-value=1.1e+02 Score=31.38 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=61.1
Q ss_pred eEeecCCceeEeeccccCCCCCChHHHHHHHHHHHHhCCcEe---eecCCC----CChHHHHHHHHhcCCCCcccchhhh
Q 005965 213 MIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV---MDLSTG----RHIHETREWILRNSAVPVGTVPIYQ 285 (667)
Q Consensus 213 ~~IG~gl~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADtV---MDLSTG----gdi~~~R~~Il~nspvPVGTVPIYq 285 (667)
..+|.+ ++||=+.| ...+.++=+++++.+...|||.| +|+-.. .++..+...+.+.. +.+||-=
T Consensus 9 ~~~~~~-~~~i~v~l----~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~----~~~PiI~ 79 (253)
T PRK02412 9 LVIGEG-APKIIVPI----MGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKF----AGKPLLF 79 (253)
T ss_pred eEeCCC-CcEEEEEe----CCCCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhc----CCCcEEE
Confidence 345555 33555544 23345555677777788899988 676544 23434444444433 2355444
Q ss_pred HHHH--hcCCCCCCCHHHHHHHHHHHHhcC-CCEEEEec
Q 005965 286 ALEK--VDGIAENLSWEVFRDTLIEQAEQG-VDYFTIHA 321 (667)
Q Consensus 286 Al~k--~~g~~~~lt~e~~~d~ieeQAeqG-VDfmTIHa 321 (667)
.+.. -||. -..+.+..++.++.-++.| |||+.|=-
T Consensus 80 T~R~~~eGG~-~~~~~~~~~~ll~~~~~~~~~d~vDiEl 117 (253)
T PRK02412 80 TFRTAKEGGE-IALSDEEYLALIKAVIKSGLPDYIDVEL 117 (253)
T ss_pred EECChhhCCC-CCCCHHHHHHHHHHHHhcCCCCEEEEec
Confidence 3321 1444 5678899999999999999 99999854
No 211
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=32.02 E-value=30 Score=36.94 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCeEE--eeCCCCC
Q 005965 402 TQGELTRRAWDKDVQVM--NEGPGHI 425 (667)
Q Consensus 402 ~LGEL~krA~e~gVQVM--IEGPGHV 425 (667)
.+-||++.|.++||+|+ |+-|||+
T Consensus 76 di~elv~yA~~rgI~vIPEiD~PGH~ 101 (329)
T cd06568 76 DYKDIVAYAAERHITVVPEIDMPGHT 101 (329)
T ss_pred HHHHHHHHHHHcCCEEEEecCCcHHH
No 212
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=32.01 E-value=2.2e+02 Score=31.02 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHH-HhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHH-HHhcCCCCCCCHHHHHHHHHHH----
Q 005965 236 IEEEVYKVQWAT-MWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQAL-EKVDGIAENLSWEVFRDTLIEQ---- 309 (667)
Q Consensus 236 ieeEveKl~~A~-~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl-~k~~g~~~~lt~e~~~d~ieeQ---- 309 (667)
.-+-++|+..++ +.|+-.++-|.-+|--..- . .....|++-.++-... ......+..||.+++-++++.-
T Consensus 81 ~i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~--~--~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA 156 (370)
T cd02929 81 DIRNLAAMTDAVHKHGALAGIELWHGGAHAPN--R--ESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAA 156 (370)
T ss_pred HHHHHHHHHHHHHHCCCeEEEecccCCCCCCc--c--CCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHH
Confidence 345566655544 5688889999887732110 0 0001222222111110 0012246789999988877754
Q ss_pred ---HhcCCCEEEEeccc---cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHH
Q 005965 310 ---AEQGVDYFTIHAGV---LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDIC 370 (667)
Q Consensus 310 ---AeqGVDfmTIHaGv---~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~ 370 (667)
.+.|.|.+=||+|- .-+.+.-..++.|. -.|||+. ++-.|+.|-.+.|-+-+
T Consensus 157 ~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD--~yGGsle-------nR~Rf~~eii~aIr~~v 214 (370)
T cd02929 157 LRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTD--EYGGSLE-------NRARFWRETLEDTKDAV 214 (370)
T ss_pred HHHHHcCCCEEEEcccccchHHHhhCccccCCcc--ccCCChH-------hhhHHHHHHHHHHHHHc
Confidence 35799999999974 33444434456666 6799984 33445666555555544
No 213
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=31.93 E-value=5.3e+02 Score=28.16 Aligned_cols=142 Identities=20% Similarity=0.152 Sum_probs=90.8
Q ss_pred cCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHH----------HHHHHHHhcCCeEEeeCC---
Q 005965 356 ENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQG----------ELTRRAWDKDVQVMNEGP--- 422 (667)
Q Consensus 356 ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LG----------EL~krA~e~gVQVMIEGP--- 422 (667)
+|++.+++|-||+-++-==|++|+|. +....++.+..+| +.+++|.+.|+-.+|+.+
T Consensus 89 ~~~~~~~~~~ii~~~~vpvv~~~~g~----------~~~~~i~~~~~~g~~v~~~v~~~~~A~~~~~~G~d~vI~~g~eA 158 (336)
T COG2070 89 RNAAEAGVDAIIEGAGVPVVSTSFGA----------PPAEFVARLKAAGIKVIHSVITVREALKAERAGADAVIAQGAEA 158 (336)
T ss_pred ccchHHhhhhHHhcCCCCEEeccCCC----------CcHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEecCCcC
Confidence 78889999988887666667888886 4455666666666 678999999999988653
Q ss_pred -CCCC----CCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccceeeecCcccccCCCChhHH
Q 005965 423 -GHIP----MHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDV 497 (667)
Q Consensus 423 -GHVP----l~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~GadfLCYVTPaEHLgLP~~eDV 497 (667)
||.= .-....=+..-.+.+++-|+-.-|= |+-|-+=-++=.=||-+.+.|+.||+-.= =+..+-.
T Consensus 159 GGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGG----I~dg~~i~AAlalGA~gVq~GT~Fl~t~E------a~a~~~~ 228 (336)
T COG2070 159 GGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGG----IADGRGIAAALALGADGVQMGTRFLATKE------ADASDAY 228 (336)
T ss_pred CCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecC----ccChHHHHHHHHhccHHHHhhhhhhcccc------cCCCHHH
Confidence 8954 3333444455555566556655554 45554433333446778899999997632 1222333
Q ss_pred HHHHHHHHHHHHHhhhhc-----CCcchh
Q 005965 498 KAGVIAYKIAAHAADLAK-----GHPLAQ 521 (667)
Q Consensus 498 reGVIA~kIAAHaaDlaK-----g~p~A~ 521 (667)
|+=+ +.|-..|++- |+|.--
T Consensus 229 K~~l----~~a~~~Dtv~~~~~~G~paR~ 253 (336)
T COG2070 229 KQAL----LQATEDDTVLTKSFTGKPARV 253 (336)
T ss_pred HHHH----hcccccCeEEEcccCCCcchh
Confidence 4333 3456677665 666543
No 214
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=31.91 E-value=56 Score=31.68 Aligned_cols=33 Identities=6% Similarity=0.050 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHhcceEEEecCCCC
Q 005965 175 EMLYCATREKLDPEFVRAEVARGRAIIPSNKKH 207 (667)
Q Consensus 175 EMe~VA~~E~i~pE~vR~~VA~Gr~VIPaN~nh 207 (667)
-|..|++.-||+++.|.+-|..||+.|..+.|.
T Consensus 48 ti~eV~e~tgVs~~~I~~~IreGRL~~~~~~nl 80 (137)
T TIGR03826 48 TVSEIVEETGVSEKLILKFIREGRLQLKHFPNL 80 (137)
T ss_pred CHHHHHHHHCcCHHHHHHHHHcCCeeccCCCCC
Confidence 477899999999999999999999999987654
No 215
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.88 E-value=84 Score=33.72 Aligned_cols=63 Identities=35% Similarity=0.441 Sum_probs=40.6
Q ss_pred HHHHHHHhCCcEeeecCCCCChHHHHHHHHh--cCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Q 005965 242 KVQWATMWGADTVMDLSTGRHIHETREWILR--NSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (667)
Q Consensus 242 Kl~~A~~~GADtVMDLSTGgdi~~~R~~Il~--nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTI 319 (667)
-+..|+++|||.|| |= .-+++++|+++=. ... +.|. ++-.||. | .++|++-|+-||||+.+
T Consensus 211 ea~eal~~gaDiI~-LD-nm~~e~vk~av~~~~~~~---~~v~----ieaSGGI----~----~~ni~~yA~tGvD~Is~ 273 (289)
T PRK07896 211 QLDEVLAEGAELVL-LD-NFPVWQTQEAVQRRDARA---PTVL----LESSGGL----T----LDTAAAYAETGVDYLAV 273 (289)
T ss_pred HHHHHHHcCCCEEE-eC-CCCHHHHHHHHHHHhccC---CCEE----EEEECCC----C----HHHHHHHHhcCCCEEEe
Confidence 34457899999999 43 4468899888732 211 2232 2222332 2 37888999999999976
Q ss_pred ec
Q 005965 320 HA 321 (667)
Q Consensus 320 Ha 321 (667)
=+
T Consensus 274 ga 275 (289)
T PRK07896 274 GA 275 (289)
T ss_pred Ch
Confidence 43
No 216
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=31.75 E-value=1.2e+02 Score=29.67 Aligned_cols=79 Identities=15% Similarity=0.077 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCcEee----ecCCCCCh---HHHHHHHHhcCCCCccc--chhhhH--HHHhcCC-----CCCCCHH
Q 005965 237 EEEVYKVQWATMWGADTVM----DLSTGRHI---HETREWILRNSAVPVGT--VPIYQA--LEKVDGI-----AENLSWE 300 (667)
Q Consensus 237 eeEveKl~~A~~~GADtVM----DLSTGgdi---~~~R~~Il~nspvPVGT--VPIYqA--l~k~~g~-----~~~lt~e 300 (667)
+.=++-++...++|||.|- |-..++++ ..+|+.+ +.||-++. ++-||+ +.+.|-+ ..+++.+
T Consensus 31 ~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v--~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~ 108 (217)
T cd00331 31 FDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV--SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDE 108 (217)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc--CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHH
Confidence 3445667788889999874 22344444 5555543 33433343 444443 2232211 2345556
Q ss_pred HHHHHHHHHHhcCCCEE
Q 005965 301 VFRDTLIEQAEQGVDYF 317 (667)
Q Consensus 301 ~~~d~ieeQAeqGVDfm 317 (667)
.+.+.+++...-|++.+
T Consensus 109 ~~~~~~~~~~~~g~~~~ 125 (217)
T cd00331 109 QLKELYELARELGMEVL 125 (217)
T ss_pred HHHHHHHHHHHcCCeEE
Confidence 66666666666677764
No 217
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=31.38 E-value=1.6e+02 Score=29.26 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=30.5
Q ss_pred CCCCCCccCCCcHHHHHHHHHH------------------HHHHHHHHhcCCeEEeeCC
Q 005965 382 GLRPGSIYDANDTAQFAELLTQ------------------GELTRRAWDKDVQVMNEGP 422 (667)
Q Consensus 382 GLRPG~iaDA~D~AQ~~EL~~L------------------GEL~krA~e~gVQVMIEGP 422 (667)
|++|=...-+.|-+=.-..+.+ -.|++++++.|++|++=|.
T Consensus 79 Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 79 GFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred CceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeC
Confidence 5555444447887766666655 3799999999999999995
No 218
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=31.29 E-value=2e+02 Score=26.56 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=45.7
Q ss_pred HHHHHHhcCCeEEeeCCCC--CCCCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhh-hcccceeee
Q 005965 406 LTRRAWDKDVQVMNEGPGH--IPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIG-ALGTALLCY 482 (667)
Q Consensus 406 L~krA~e~gVQVMIEGPGH--VPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHItsAIGaA~aa-~~GadfLCY 482 (667)
+.+..++.-==|.|||||+ .|+...-.|.++-+.++ +|.. ||++..++. |..++.+...- ..|.+.++.
T Consensus 92 ~~~~l~~~~D~viid~~g~~~~~~~~~~~~~dl~~~~~--~~vi----lV~~~~~~~--~~~~~~~~~~l~~~~~~i~gv 163 (166)
T TIGR00347 92 HLRTLEQKYDFVLVEGAGGLCVPITEEYTTADLIKLLQ--LPVI----LVVRVKLGT--INHTLLTVEHARQTGLTLAGV 163 (166)
T ss_pred HHHHHHhcCCEEEEEcCCccccCCCCCCcHHHHHHHhC--CCEE----EEECCCCcH--HHHHHHHHHHHHHCCCCeEEE
Confidence 3333333333578999986 78887667888888874 4542 556665554 77777766444 448888876
Q ss_pred c
Q 005965 483 V 483 (667)
Q Consensus 483 V 483 (667)
|
T Consensus 164 v 164 (166)
T TIGR00347 164 I 164 (166)
T ss_pred E
Confidence 5
No 219
>PRK07572 cytosine deaminase; Validated
Probab=31.24 E-value=2.1e+02 Score=31.11 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHhHhceeE--eccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe
Q 005965 360 YEHWDEILDICNQYDVAL--SIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ 416 (667)
Q Consensus 360 Ye~FD~ileI~k~YDVtl--SLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQ 416 (667)
.++++.+++.+++|++-+ =+..+..+.. ..+-.++++.+++|++
T Consensus 190 ~e~l~~~~~~A~~~g~~v~~H~~e~~~~~~-------------~~~~~~~~~~~~~G~~ 235 (426)
T PRK07572 190 AESVRLLCEIAAERGLRVDMHCDESDDPLS-------------RHIETLAAETQRLGLQ 235 (426)
T ss_pred HHHHHHHHHHHHHcCCCeEEEECCCCChhH-------------HHHHHHHHHHHHhCCC
Confidence 389999999999999655 4545544321 1122356777888876
No 220
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=31.21 E-value=56 Score=33.51 Aligned_cols=176 Identities=15% Similarity=0.153 Sum_probs=106.4
Q ss_pred ccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcC
Q 005965 335 MTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKD 414 (667)
Q Consensus 335 vtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~g 414 (667)
+.+|..|--.-...|....+. +.|+.||++++ ..-|+++= ++--. ...|++..|-++|
T Consensus 4 LvaV~D~~~e~a~~~a~~~g~--~~~~d~~eLl~--~~vDaVvi------------atp~~------~H~e~a~~aL~aG 61 (229)
T TIGR03855 4 IAAVYDRNPKDAKELAERCGA--KIVSDFDEFLP--EDVDIVVE------------AASQE------AVKEYAEKILKNG 61 (229)
T ss_pred EEEEECCCHHHHHHHHHHhCC--ceECCHHHHhc--CCCCEEEE------------CCChH------HHHHHHHHHHHCC
Confidence 344444443333344444432 57888888875 44565442 22222 2367888999999
Q ss_pred CeEEeeCCCCCC-CCchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHhhh-cccceeeecCccc--ccC
Q 005965 415 VQVMNEGPGHIP-MHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGA-LGTALLCYVTPKE--HLG 490 (667)
Q Consensus 415 VQVMIEGPGHVP-l~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~-~GadfLCYVTPaE--HLg 490 (667)
.-|+++-||-.- ..+.++=++.-++ ++.++|+- +|+=..--+| -+|. -+-+.+.|.|-+- -|+
T Consensus 62 khVl~~s~gAlad~e~~~~l~~aA~~--~g~~l~i~--------sGai~g~d~l---~a~~ig~~~~V~i~~~k~p~~~~ 128 (229)
T TIGR03855 62 KDLLIMSVGALADRELRERLREVARS--SGRKVYIP--------SGAIGGLDAL---KAASLGRIERVVLTTTKPPASLG 128 (229)
T ss_pred CCEEEECCcccCCHHHHHHHHHHHHh--cCCEEEEC--------hHHHHHHHHH---HhcccCCceEEEEEEecChHHhc
Confidence 999999998653 3444444455555 77888864 4654443344 2233 3446777776432 232
Q ss_pred --CCChhHHHHHHHHHHHHHHHhhhhcCCcchhhHHHHHHHHHhhcCHHHHHhccCChHHHHhhhhcc
Q 005965 491 --LPNRDDVKAGVIAYKIAAHAADLAKGHPLAQTWDDALSKARFEFRWMDQFALSLDPMTAMSFHDET 556 (667)
Q Consensus 491 --LP~~eDVreGVIA~kIAAHaaDlaKg~p~A~~rD~~mS~AR~~~dWe~Qf~LalDPe~Ar~~~~~~ 556 (667)
+..+.-+.+| -|.+.++..|.-.+==-++|-|= -|| -+.+|--||...+-.|+=.
T Consensus 129 ~~~~~~~~~f~G--------~a~ea~~~fP~n~Nva~a~alA~-g~d--~~v~i~adp~~~~n~h~i~ 185 (229)
T TIGR03855 129 RDIKEPTTIFEG--------SASEAIKLFPANINVAATLSLAA-GFD--AKVEIVADPEADRNIHEIF 185 (229)
T ss_pred CCCCCCEEEEEe--------cHHHHHHHCCchHHHHHHHHHhc-CCC--cEEEEEEcCCCCCcEEEEE
Confidence 2223334444 35566678888777777777776 677 8899999999888777654
No 221
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=31.16 E-value=40 Score=35.74 Aligned_cols=105 Identities=20% Similarity=0.268 Sum_probs=54.9
Q ss_pred HHHHHHHHHHH----------HHHHHHHhcCCeEEe-eC---CCCCCCCchHHHHHHHHHhcC--CCCccccCccccccC
Q 005965 394 TAQFAELLTQG----------ELTRRAWDKDVQVMN-EG---PGHIPMHKIPENMQKQLEWCN--EAPFYTLGPLTTDIA 457 (667)
Q Consensus 394 ~AQ~~EL~~LG----------EL~krA~e~gVQVMI-EG---PGHVPl~~I~~Nv~lqk~lC~--~APfYvLGPLvTDIA 457 (667)
...+++|...| +.+++|.+.||-+.| +| -||.. .++...+.|-.++++ .-|...-|=+ +
T Consensus 126 ~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g-~~~~~~~~L~~~v~~~~~iPViaAGGI----~ 200 (330)
T PF03060_consen 126 PEVIERLHAAGIKVIPQVTSVREARKAAKAGADAIVAQGPEAGGHRG-FEVGSTFSLLPQVRDAVDIPVIAAGGI----A 200 (330)
T ss_dssp HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEE-TTSSEE----SSG-HHHHHHHHHHH-SS-EEEESS------
T ss_pred HHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEEEEeccccCCCCC-ccccceeeHHHHHhhhcCCcEEEecCc----C
Confidence 44666666655 678889999997665 55 59998 333345555444443 2555555543 2
Q ss_pred CCchhHHHhH-HHHHhhhcccceeeecCcccccCCCChhHHHHHHHHHHHHHHHhhhh
Q 005965 458 PGYDHITSAI-GAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLA 514 (667)
Q Consensus 458 pGYDHItsAI-GaA~aa~~GadfLCYVTPaEHLgLP~~eDVreGVIA~kIAAHaaDla 514 (667)
-| ..|.+|+ =||-+.+.|+.|||- .| =+..+..|+-++.. ...|+.
T Consensus 201 dg-~~iaaal~lGA~gV~~GTrFl~t---~E---s~~~~~~K~~l~~a----~~~dtv 247 (330)
T PF03060_consen 201 DG-RGIAAALALGADGVQMGTRFLAT---EE---SGASDAYKQALVDA----TEEDTV 247 (330)
T ss_dssp SH-HHHHHHHHCT-SEEEESHHHHTS---TT---S-S-HHHHHHHHHG----GTT-EE
T ss_pred CH-HHHHHHHHcCCCEeecCCeEEec---cc---ccChHHHHHHHHhC----CCCCEE
Confidence 23 2355555 246666777777754 22 35557788887764 445654
No 222
>PRK13206 ureC urease subunit alpha; Reviewed
Probab=31.10 E-value=1.7e+02 Score=34.46 Aligned_cols=78 Identities=27% Similarity=0.431 Sum_probs=51.8
Q ss_pred HHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCC
Q 005965 304 DTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGL 383 (667)
Q Consensus 304 d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGL 383 (667)
+.|++|.+.|+..|.+|- .|- -+ -..++++++.+++||+.+.+
T Consensus 210 ~~L~el~~aGA~GfKi~~--------------------------d~g-----~t--~~~i~~aL~~A~~~gv~V~i---- 252 (573)
T PRK13206 210 EALWEQLRGGAGGFKLHE--------------------------DWG-----ST--PAAIDACLRVADAAGVQVAL---- 252 (573)
T ss_pred HHHHHHHHCCCcEEeecC--------------------------ccC-----CC--HHHHHHHHHHHHHhCCEEEE----
Confidence 478999999999999992 110 11 23789999999999998874
Q ss_pred CCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCC--CCCC
Q 005965 384 RPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGP--GHIP 426 (667)
Q Consensus 384 RPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGP--GHVP 426 (667)
-+|...++-|.|. ++.....|.-- -.-+||. ||+|
T Consensus 253 ----Hadtlne~g~~E~-t~aa~~gr~iH---~~H~egaggghap 289 (573)
T PRK13206 253 ----HSDTLNEAGFVED-TLAAIAGRSIH---AYHTEGAGGGHAP 289 (573)
T ss_pred ----ECCCccccchhhH-HHHHhcCCeEE---EEeccCCCcCccc
Confidence 3555566677777 55443332110 1235764 7988
No 223
>PRK12361 hypothetical protein; Provisional
Probab=30.77 E-value=1.5e+02 Score=33.50 Aligned_cols=122 Identities=14% Similarity=0.187 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 005965 239 EVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFT 318 (667)
Q Consensus 239 EveKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmT 318 (667)
++++|+ ++|-.+|.||..--+. . ++-.....+-.=.+|+.+-. .+..-..+...+.|+++.++|=. +-
T Consensus 112 d~~~L~---~~gI~~Vldlt~E~~~--~-~~~~~~~~i~yl~iPi~D~~-----~p~~~~l~~a~~~i~~~~~~~~~-Vl 179 (547)
T PRK12361 112 DLEKLK---SNKITAILDVTAEFDG--L-DWSLTEEDIDYLNIPILDHS-----VPTLAQLNQAINWIHRQVRANKS-VV 179 (547)
T ss_pred cHHHHH---HcCCCEEEEccccccc--c-cccccccCceEEEeecCCCC-----CCcHHHHHHHHHHHHHHHHCCCe-EE
Confidence 445553 6999999999743211 0 00001111222233443310 00001134556777788887755 55
Q ss_pred EeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHH
Q 005965 319 IHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFA 398 (667)
Q Consensus 319 IHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~ 398 (667)
|||- .| +||.++++++|+++.++.- .+++-++..|+ .||...--. +|++
T Consensus 180 VHC~---------~G-----~sRSa~vv~ayLm~~~~~~----~~~eA~~~vr~----------~Rp~v~~n~---~q~~ 228 (547)
T PRK12361 180 VHCA---------LG-----RGRSVLVLAAYLLCKDPDL----TVEEVLQQIKQ----------IRKTARLNK---RQLR 228 (547)
T ss_pred EECC---------CC-----CCcHHHHHHHHHHHhccCC----CHHHHHHHHHH----------HCCCCCCCH---HHHH
Confidence 9993 33 5999999999999775432 23566666654 366655432 4555
Q ss_pred HHHHH
Q 005965 399 ELLTQ 403 (667)
Q Consensus 399 EL~~L 403 (667)
.|..+
T Consensus 229 ~l~~~ 233 (547)
T PRK12361 229 ALEKM 233 (547)
T ss_pred HHHHH
Confidence 54433
No 224
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=30.76 E-value=39 Score=35.08 Aligned_cols=185 Identities=19% Similarity=0.216 Sum_probs=84.8
Q ss_pred HHHHHHhCCcEeeecCCCCChHHHHHHHHhc-------CCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCC
Q 005965 243 VQWATMWGADTVMDLSTGRHIHETREWILRN-------SAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVD 315 (667)
Q Consensus 243 l~~A~~~GADtVMDLSTGgdi~~~R~~Il~n-------spvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVD 315 (667)
.+.|.+.|||+|=-=.-- ..+-+.++ ++-+-+..|.|+.+++. .|++|++.+..+.--+.|++
T Consensus 2 I~~A~~aGaDaVKFQ~~~-----~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~-----el~~e~~~~L~~~~~~~gi~ 71 (241)
T PF03102_consen 2 IDAAAEAGADAVKFQTFT-----AEELYSPNAYKAPYQSPNGWGDESYYELFKKL-----ELSEEQHKELFEYCKELGID 71 (241)
T ss_dssp HHHHHHHT-SEEEEEEB------HHHHCSGGGGG-------TT-SSTHHHHHHHH-----SS-HHHHHHHHHHHHHTT-E
T ss_pred HHHHHHhCCCEEEEEEEc-----hhhhcChhhhcccccccCCCCCCcHHHHHHHh-----cCCHHHHHHHHHHHHHcCCE
Confidence 367889999999422111 11111121 12235677999988874 69999999999988899999
Q ss_pred EEEEeccccccccccc---cCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCC
Q 005965 316 YFTIHAGVLLRYIPLT---AKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDAN 392 (667)
Q Consensus 316 fmTIHaGv~~~~l~~~---~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~ 392 (667)
||+==... +.++.. .--..=|-| .-.++++ ||+-+.+.+.-+-|.=|+
T Consensus 72 f~stpfd~--~s~d~l~~~~~~~~KIaS-----------------~dl~n~~-lL~~~A~tgkPvIlSTG~--------- 122 (241)
T PF03102_consen 72 FFSTPFDE--ESVDFLEELGVPAYKIAS-----------------GDLTNLP-LLEYIAKTGKPVILSTGM--------- 122 (241)
T ss_dssp EEEEE-SH--HHHHHHHHHT-SEEEE-G-----------------GGTT-HH-HHHHHHTT-S-EEEE-TT---------
T ss_pred EEECCCCH--HHHHHHHHcCCCEEEecc-----------------ccccCHH-HHHHHHHhCCcEEEECCC---------
Confidence 99754432 222211 000111111 1233555 666666666544444333
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCeEEee-CCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCCCc-hhHHHhHHHH
Q 005965 393 DTAQFAELLTQGELTRRAWDKDVQVMNE-GPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGY-DHITSAIGAA 470 (667)
Q Consensus 393 D~AQ~~EL~~LGEL~krA~e~gVQVMIE-GPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGY-DHItsAIGaA 470 (667)
+-+.|+..--+..++ ..+.|+.+- ..--.|-.-=..|+.....|=.- +| +.-|| ||-.+..-..
T Consensus 123 --stl~EI~~Av~~~~~--~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~-----f~-----~~vG~SDHt~g~~~~~ 188 (241)
T PF03102_consen 123 --STLEEIERAVEVLRE--AGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKER-----FG-----VPVGYSDHTDGIEAPI 188 (241)
T ss_dssp ----HHHHHHHHHHHHH--HCT--EEEEEE-SSSS--GGG--TTHHHHHHHH-----ST-----SEEEEEE-SSSSHHHH
T ss_pred --CCHHHHHHHHHHHHh--cCCCCEEEEecCCCCCCChHHcChHHHHHHHHh-----cC-----CCEEeCCCCCCcHHHH
Confidence 345555555444443 345555554 33444433333333333222221 11 11255 6766554555
Q ss_pred Hhhhccccee
Q 005965 471 NIGALGTALL 480 (667)
Q Consensus 471 ~aa~~GadfL 480 (667)
+|...||.++
T Consensus 189 ~AvalGA~vI 198 (241)
T PF03102_consen 189 AAVALGARVI 198 (241)
T ss_dssp HHHHTT-SEE
T ss_pred HHHHcCCeEE
Confidence 6667898876
No 225
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=30.70 E-value=51 Score=37.39 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=28.6
Q ss_pred EEeeCCCC-CCCCchHHHHHHHHHhcCCCCccc
Q 005965 417 VMNEGPGH-IPMHKIPENMQKQLEWCNEAPFYT 448 (667)
Q Consensus 417 VMIEGPGH-VPl~~I~~Nv~lqk~lC~~APfYv 448 (667)
+.|.|.|| ||.++=+.-.++-+++-.+.|++.
T Consensus 420 ~tVrGaGH~VP~~~p~~al~m~~~fl~g~~l~~ 452 (454)
T KOG1282|consen 420 ATVRGAGHMVPYDKPESALIMFQRFLNGQPLPS 452 (454)
T ss_pred EEEeCCcccCCCCCcHHHHHHHHHHHcCCCCCC
Confidence 99999999 999999988889899888888753
No 226
>PRK06740 histidinol-phosphatase; Validated
Probab=30.08 E-value=1.1e+02 Score=32.97 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=44.4
Q ss_pred CCChHHHHHHHHHHHHhCCc--Ee-----eecCCCCChHHHHHHHHhcC--CCCcccchhh--------hHHHHhc-CCC
Q 005965 233 ASSIEEEVYKVQWATMWGAD--TV-----MDLSTGRHIHETREWILRNS--AVPVGTVPIY--------QALEKVD-GIA 294 (667)
Q Consensus 233 ~~~ieeEveKl~~A~~~GAD--tV-----MDLSTGgdi~~~R~~Il~ns--pvPVGTVPIY--------qAl~k~~-g~~ 294 (667)
....-+|+++|+. +|..+ .| +|.-.+ ....+++ +++.. ..-||.|=-. ...+... +..
T Consensus 121 l~~Y~~ei~~Lke--kY~~~~I~Il~GlE~dy~~~-~~~~~~~-~l~~~~~DyvIgSVH~i~g~~~~~~~~~~~~~~~~~ 196 (331)
T PRK06740 121 LDDFTKAIEEAKE--RWSKRGVTLKLGIEADYFIG-GEQELQS-LLALGDFDYVIGSVHFLNGWGFDNPDTKEYFEEHDL 196 (331)
T ss_pred HHHHHHHHHHHHH--HhccCCCeEEEEEEeccCCC-cHHHHHH-HHhcCCCCEEEEeeeEeCCcCCCCccHHHHhcCCCH
Confidence 3345667777774 55432 34 555433 4466775 55433 5567765211 1112221 222
Q ss_pred CCCCHHHHHHHHHHHHhcC-CCEEEEeccc
Q 005965 295 ENLSWEVFRDTLIEQAEQG-VDYFTIHAGV 323 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqG-VDfmTIHaGv 323 (667)
.+ -++.+++.+++-++.| +|++ =|..+
T Consensus 197 ~~-~~~~Yf~~~~~~i~~~~fdvI-gHpDl 224 (331)
T PRK06740 197 YA-LYDTFFKTVECAIRSELFDII-AHLDN 224 (331)
T ss_pred HH-HHHHHHHHHHHHHHcCCCCEe-eCccH
Confidence 22 2477889998888765 4444 36654
No 227
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=29.95 E-value=4.2e+02 Score=23.92 Aligned_cols=132 Identities=11% Similarity=0.020 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 005965 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (667)
Q Consensus 300 e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSL 379 (667)
+.+.+.++.-++.|+|++.+-. .... +... + ...+ ..+-.+.+.+++.+-.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~--~~~~-~~~~-~---~~~~----------------------~~~~~~~~~~~~~~~~ 62 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGT--RSSD-PEEA-E---TDDK----------------------EVLKEVAAETDLPLGV 62 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEee--EEEC-cccC-C---Cccc----------------------cHHHHHHhhcCCcEEE
Confidence 6677777888888999966542 1111 1101 1 1111 4566667777776655
Q ss_pred cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC-CchHHHHHHHHHhcCCCCccccCccccccCC
Q 005965 380 GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM-HKIPENMQKQLEWCNEAPFYTLGPLTTDIAP 458 (667)
Q Consensus 380 GDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl-~~I~~Nv~lqk~lC~~APfYvLGPLvTDIAp 458 (667)
..... |..|+.+ .+++++.+.|.+.+.=+.+|.+. ..+.+-++.-++.+.+.|+.+--...++
T Consensus 63 ~~~~~--------~~~~~~~-----~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~--- 126 (200)
T cd04722 63 QLAIN--------DAAAAVD-----IAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGE--- 126 (200)
T ss_pred EEccC--------Cchhhhh-----HHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCc---
Confidence 54321 1222222 12788899998877666666431 2233344444444433333222211111
Q ss_pred CchhHHHhHHHHHhhhcccceeeecC
Q 005965 459 GYDHITSAIGAANIGALGTALLCYVT 484 (667)
Q Consensus 459 GYDHItsAIGaA~aa~~GadfLCYVT 484 (667)
.+.. + ...+|+|++++..
T Consensus 127 -~~~~---~----~~~~g~d~i~~~~ 144 (200)
T cd04722 127 -LAAA---A----AEEAGVDEVGLGN 144 (200)
T ss_pred -cchh---h----HHHcCCCEEEEcC
Confidence 1221 1 4567999998754
No 228
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=29.82 E-value=6.7e+02 Score=26.23 Aligned_cols=187 Identities=9% Similarity=0.026 Sum_probs=102.3
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCcE----eeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCC
Q 005965 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADT----VMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAE 295 (667)
Q Consensus 220 ~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADt----VMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~ 295 (667)
+++|..+| -|++...+++|++++. ++|+|. |||=.--.||.= =-++++..+ + ++|+ ++ -
T Consensus 12 ~~~I~pSi-l~ad~~~l~~el~~l~---~~g~d~lHiDVMDG~FVPNitf-Gp~~i~~i~-~--~~~~-Dv--------H 74 (228)
T PRK08091 12 QQPISVGI-LASNWLKFNETLTTLS---ENQLRLLHFDIADGQFSPFFTV-GAIAIKQFP-T--HCFK-DV--------H 74 (228)
T ss_pred CCeEEeeh-hhcCHHHHHHHHHHHH---HCCCCEEEEeccCCCcCCcccc-CHHHHHHhC-C--CCCE-EE--------E
Confidence 45666677 5677778888988775 558998 677544444321 111111111 1 2331 21 1
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCC-------cCchhhhHHHHHH
Q 005965 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHK-------ENFAYEHWDEILD 368 (667)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~-------ENpLYe~FD~ile 368 (667)
=|. +.-.+.|++-++.|+|++|||.--+.. +. -+..|+..++. =||- |-++.|.+
T Consensus 75 LMv-~~P~~~i~~~~~aGad~It~H~Ea~~~-~~---------------~~l~~Ik~~g~~~kaGlalnP~-Tp~~~i~~ 136 (228)
T PRK08091 75 LMV-RDQFEVAKACVAAGADIVTLQVEQTHD-LA---------------LTIEWLAKQKTTVLIGLCLCPE-TPISLLEP 136 (228)
T ss_pred ecc-CCHHHHHHHHHHhCCCEEEEcccCccc-HH---------------HHHHHHHHCCCCceEEEEECCC-CCHHHHHH
Confidence 111 112345677788899999999975421 11 12345555554 3774 78899999
Q ss_pred HHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccc
Q 005965 369 ICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYT 448 (667)
Q Consensus 369 I~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYv 448 (667)
++..-|..|=+. .-||.-.=.-....+ ..+.+|-+.-.++|..+-||==|.|-. +|+..-.+ .||=.+|
T Consensus 137 ~l~~vD~VLiMt--V~PGfgGQ~f~~~~l---~KI~~lr~~~~~~~~~~~IeVDGGI~~----~ti~~l~~--aGaD~~V 205 (228)
T PRK08091 137 YLDQIDLIQILT--LDPRTGTKAPSDLIL---DRVIQVENRLGNRRVEKLISIDGSMTL----ELASYLKQ--HQIDWVV 205 (228)
T ss_pred HHhhcCEEEEEE--ECCCCCCccccHHHH---HHHHHHHHHHHhcCCCceEEEECCCCH----HHHHHHHH--CCCCEEE
Confidence 999999776552 345544333333333 333344444345665544444455543 35543333 4577787
Q ss_pred cCcc
Q 005965 449 LGPL 452 (667)
Q Consensus 449 LGPL 452 (667)
.|--
T Consensus 206 ~GSa 209 (228)
T PRK08091 206 SGSA 209 (228)
T ss_pred EChh
Confidence 7743
No 229
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=29.64 E-value=72 Score=33.18 Aligned_cols=88 Identities=24% Similarity=0.279 Sum_probs=55.0
Q ss_pred HHHHHHhCCcEeeecCCCC--ChHHHH-----HHHH----hcC--CCCccc-chhhhHH----HHh---c-------CCC
Q 005965 243 VQWATMWGADTVMDLSTGR--HIHETR-----EWIL----RNS--AVPVGT-VPIYQAL----EKV---D-------GIA 294 (667)
Q Consensus 243 l~~A~~~GADtVMDLSTGg--di~~~R-----~~Il----~ns--pvPVGT-VPIYqAl----~k~---~-------g~~ 294 (667)
+....+.|+|.||=|+||. ++..-+ ..|| +.. .-.+|- ||.=+-. .|- . -++
T Consensus 80 i~~le~~G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~al~~~~~vGVivP~~eQ~~~~~~kW~~l~~~~~~a~asP 159 (221)
T PF07302_consen 80 IAQLEAQGYDVILLLCTGEFPGLTARNPLLEPDRILPPLVAALVGGHQVGVIVPLPEQIAQQAEKWQPLGNPVVVAAASP 159 (221)
T ss_pred HHHHHHCCCCEEEEeccCCCCCCCCCcceeehHHhHHHHHHHhcCCCeEEEEecCHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 4456678999999999996 443222 1111 111 123332 3543322 121 1 133
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEec-ccccccccc
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHA-GVLLRYIPL 330 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHa-Gv~~~~l~~ 330 (667)
-.-+++.|.+.-++-.++|.|++-+|| |.+.++-..
T Consensus 160 y~~~~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~ 196 (221)
T PF07302_consen 160 YEGDEEELAAAARELAEQGADLIVLDCMGYTQEMRDI 196 (221)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHH
Confidence 346899999999999999999999999 877666543
No 230
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=29.57 E-value=35 Score=35.72 Aligned_cols=27 Identities=26% Similarity=0.206 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecc
Q 005965 296 NLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (667)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDfmTIHaG 322 (667)
-++.+.+.+.|..-|.-+...+-+|-.
T Consensus 12 ~~~~~~lk~~id~ma~~K~N~lhlHl~ 38 (303)
T cd02742 12 FLSVESIKRTIDVLARYKINTFHWHLT 38 (303)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEeee
Confidence 467899999999999999999999964
No 231
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=29.48 E-value=1e+02 Score=32.91 Aligned_cols=68 Identities=29% Similarity=0.368 Sum_probs=42.6
Q ss_pred HHHHHHHHHhCCcEeeecCCCCChHHHHHHHH--hcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEE
Q 005965 240 VYKVQWATMWGADTVMDLSTGRHIHETREWIL--RNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYF 317 (667)
Q Consensus 240 veKl~~A~~~GADtVMDLSTGgdi~~~R~~Il--~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfm 317 (667)
++-+..|.++|||-|| |- .-+++++|+++- ++. -+.+|+. -.||. |. +.|.+-++-|||++
T Consensus 206 leea~eA~~~GaD~I~-LD-n~~~e~l~~av~~~~~~---~~~i~le----AsGGI----t~----~ni~~ya~tGvD~I 268 (288)
T PRK07428 206 LEQVQEALEYGADIIM-LD-NMPVDLMQQAVQLIRQQ---NPRVKIE----ASGNI----TL----ETIRAVAETGVDYI 268 (288)
T ss_pred HHHHHHHHHcCCCEEE-EC-CCCHHHHHHHHHHHHhc---CCCeEEE----EECCC----CH----HHHHHHHHcCCCEE
Confidence 4456678899999997 43 346677777653 211 1244432 22333 32 67788899999999
Q ss_pred EEecccc
Q 005965 318 TIHAGVL 324 (667)
Q Consensus 318 TIHaGv~ 324 (667)
.+=+-++
T Consensus 269 svgsl~~ 275 (288)
T PRK07428 269 SSSAPIT 275 (288)
T ss_pred EEchhhh
Confidence 8765443
No 232
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=29.18 E-value=51 Score=35.62 Aligned_cols=120 Identities=16% Similarity=0.175 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCC--CCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 005965 236 IEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSA--VPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (667)
Q Consensus 236 ieeEveKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nsp--vPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqG 313 (667)
+++=++.+++-+++|||.|-==... +.+++|+ +.++.+ +|+-.+.- ++. -.+|.+ +-++-|
T Consensus 165 ld~AI~Ra~AY~eAGAD~if~~al~-~~e~i~~-f~~av~~pl~~N~t~~-------g~t-p~~~~~-------~L~~~G 227 (289)
T COG2513 165 LDDAIERAQAYVEAGADAIFPEALT-DLEEIRA-FAEAVPVPLPANITEF-------GKT-PLLTVA-------ELAELG 227 (289)
T ss_pred HHHHHHHHHHHHHcCCcEEccccCC-CHHHHHH-HHHhcCCCeeeEeecc-------CCC-CCcCHH-------HHHhcC
Confidence 8999999999999999999854444 5777765 445555 44433322 222 345544 446789
Q ss_pred CCEEEEeccccccccccccCcccCccccccHHHHHH-HHHcCCcCchhhhHHHHHHHHhHh
Q 005965 314 VDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKW-CLAYHKENFAYEHWDEILDICNQY 373 (667)
Q Consensus 314 VDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~W-ml~h~~ENpLYe~FD~ileI~k~Y 373 (667)
|..+.+=. ...+..-....+...-+.|+|+...-- -+.+.+|+..|.+|++..+.-.++
T Consensus 228 v~~V~~~~-~~~raa~~a~~~~~~~i~~~gt~~~~~d~m~~r~~l~~~~~y~~~~~~~~~~ 287 (289)
T COG2513 228 VKRVSYGL-TAFRAALKAAEQAAREIRREGTQANVLDKMQTRKELYDLINYYDYEAKDDEL 287 (289)
T ss_pred ceEEEECc-HHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHhhcHHHHHHHHHhh
Confidence 99985533 333333344567777788888653221 123367888888888877665543
No 233
>PRK01060 endonuclease IV; Provisional
Probab=29.13 E-value=5.3e+02 Score=25.91 Aligned_cols=99 Identities=14% Similarity=0.170 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhcee---E
Q 005965 301 VFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVA---L 377 (667)
Q Consensus 301 ~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVt---l 377 (667)
++-++|+.-++.|.|.|=|-.+--.. |- ...-..+..+++-+.+++|++. +
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~----------------------~~----~~~~~~~~~~~lk~~~~~~gl~~~~~ 66 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQ----------------------WK----RKPLEELNIEAFKAACEKYGISPEDI 66 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCC----------------------Cc----CCCCCHHHHHHHHHHHHHcCCCCCce
Confidence 37788889999999999875431110 10 0011233466777888899987 5
Q ss_pred eccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCC
Q 005965 378 SIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIP 426 (667)
Q Consensus 378 SLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVP 426 (667)
+.-... +..+++...+-.-..+..+-+-.+.|.+.|+.+++=-||+.+
T Consensus 67 ~~h~~~-~~nl~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~ 114 (281)
T PRK01060 67 LVHAPY-LINLGNPNKEILEKSRDFLIQEIERCAALGAKLLVFHPGSHL 114 (281)
T ss_pred EEecce-EecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCC
Confidence 553332 133444433323333556667777889999998888888854
No 234
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=28.80 E-value=1.4e+02 Score=28.76 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 005965 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (667)
Q Consensus 300 e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSL 379 (667)
+.+.+.|++-+++|+|++.+=-..+..+......+. + ...+.+.-..++.|.+++++|++.+-+
T Consensus 18 ~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~----~------------~~~~~~~~~~~~~l~~~a~~~~i~ii~ 81 (253)
T cd07197 18 AKALRLIKEAAEQGADLIVLPELFLTGYSFESAKED----L------------DLAEELDGPTLEALAELAKELGIYIVA 81 (253)
T ss_pred HHHHHHHHHHHHCCCCEEEcCCccccCCccccchhh----h------------hhcccCCchHHHHHHHHHHHhCeEEEe
Confidence 556677778888999998543221111100000000 0 112233446789999999999999998
Q ss_pred cCC
Q 005965 380 GDG 382 (667)
Q Consensus 380 GDG 382 (667)
|=-
T Consensus 82 G~~ 84 (253)
T cd07197 82 GIA 84 (253)
T ss_pred eeE
Confidence 843
No 235
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=28.22 E-value=4.1e+02 Score=26.73 Aligned_cols=195 Identities=21% Similarity=0.193 Sum_probs=100.2
Q ss_pred CCChHHHHHHHHHHHHhCCcEe---eecCCCCChHHHHHHHHhcCCCCcccchhhhHHHH-h-cCCCCCCCHHHHHHHHH
Q 005965 233 ASSIEEEVYKVQWATMWGADTV---MDLSTGRHIHETREWILRNSAVPVGTVPIYQALEK-V-DGIAENLSWEVFRDTLI 307 (667)
Q Consensus 233 ~~~ieeEveKl~~A~~~GADtV---MDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k-~-~g~~~~lt~e~~~d~ie 307 (667)
..+.++-..+++.+ ..|||.| +|+....+....-..+++....-.+.+||-=.+.. . ||. -..+.+..++.+.
T Consensus 8 ~~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~-~~~~~~~~~~ll~ 85 (228)
T TIGR01093 8 APDLEEALATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGK-FPGNEEEYLEELK 85 (228)
T ss_pred CCCHHHHHHHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCC-CCCCHHHHHHHHH
Confidence 44566666666666 7899997 67664433332223333321111135675444432 2 444 5788899999877
Q ss_pred HH-HhcCCCEEEEecccccccccc-----ccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccC
Q 005965 308 EQ-AEQGVDYFTIHAGVLLRYIPL-----TAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGD 381 (667)
Q Consensus 308 eQ-AeqGVDfmTIHaGv~~~~l~~-----~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGD 381 (667)
+- ...|+||+.|=.-...+.+.. ..++.-=|+|. |+-...|-.+..-++++-+++++ +|
T Consensus 86 ~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~----------H~f~~tp~~~~l~~~~~~~~~~g-----aD 150 (228)
T TIGR01093 86 RAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSY----------HDFQKTPSWEEIVERLEKALSYG-----AD 150 (228)
T ss_pred HHHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEec----------cCCCCCCCHHHHHHHHHHHHHhC-----CC
Confidence 66 367899999865433222221 12222223332 33456676766666677666653 34
Q ss_pred CCCCCCccCCCcHHHHHHHHHHHHHHHHHHhc-CCe--EEeeCCCCCCCCchHHHHHHHHHhcC--CCCccccCcccccc
Q 005965 382 GLRPGSIYDANDTAQFAELLTQGELTRRAWDK-DVQ--VMNEGPGHIPMHKIPENMQKQLEWCN--EAPFYTLGPLTTDI 456 (667)
Q Consensus 382 GLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~-gVQ--VMIEGPGHVPl~~I~~Nv~lqk~lC~--~APfYvLGPLvTDI 456 (667)
-.|= ..-+++.....+|.. ++..+.+. .+. +|-=|+ +-++- +++. --|.++++-+..-.
T Consensus 151 ivKi--a~~a~~~~D~~~ll~---~~~~~~~~~~~p~i~~~MG~----~G~~S-------Ril~~~~gs~~t~~~~~~~s 214 (228)
T TIGR01093 151 IVKI--AVMANSKEDVLTLLE---ITNKVDEHADVPLITMSMGD----RGKIS-------RVLGAVFGSVLTFGSLGKAS 214 (228)
T ss_pred EEEE--EeccCCHHHHHHHHH---HHHHHHhcCCCCEEEEeCCC----CChhH-------hhccccccccceeccCCCCC
Confidence 4442 223455555555553 34443322 233 333333 01111 1111 13556777777777
Q ss_pred CCCc
Q 005965 457 APGY 460 (667)
Q Consensus 457 ApGY 460 (667)
|||-
T Consensus 215 ApGQ 218 (228)
T TIGR01093 215 APGQ 218 (228)
T ss_pred CCCC
Confidence 8885
No 236
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=28.19 E-value=1e+02 Score=29.67 Aligned_cols=55 Identities=24% Similarity=0.365 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhcee
Q 005965 297 LSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVA 376 (667)
Q Consensus 297 lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVt 376 (667)
+..+.+++.|++-.+.||+++-+-.. +-.++=+++...+|.++|++|++.
T Consensus 9 ~~~~~~~~~l~~~~~~gv~~v~lR~k------------------------------~~~~~~~~~~a~~l~~~~~~~~~~ 58 (180)
T PF02581_consen 9 LCGDDFLEQLEAALAAGVDLVQLREK------------------------------DLSDEELLELARRLAELCQKYGVP 58 (180)
T ss_dssp TSTCHHHHHHHHHHHTT-SEEEEE-S------------------------------SS-HHHHHHHHHHHHHHHHHTTGC
T ss_pred hhcchHHHHHHHHHHCCCcEEEEcCC------------------------------CCCccHHHHHHHHHHHHhhcceEE
Confidence 44678999999999999999866442 223345678889999999999999
Q ss_pred EeccC
Q 005965 377 LSIGD 381 (667)
Q Consensus 377 lSLGD 381 (667)
|-+-|
T Consensus 59 liin~ 63 (180)
T PF02581_consen 59 LIIND 63 (180)
T ss_dssp EEEES
T ss_pred EEecC
Confidence 99877
No 237
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=28.13 E-value=1.6e+02 Score=31.31 Aligned_cols=76 Identities=20% Similarity=0.173 Sum_probs=47.2
Q ss_pred ChHHHHHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcC----CCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHH
Q 005965 235 SIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNS----AVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQA 310 (667)
Q Consensus 235 ~ieeEveKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~ns----pvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQA 310 (667)
++++=++.++.+.++|||.||=-+--.+.+++++..-+-. |+|+--+| +....++ +.+-.
T Consensus 167 ~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~---------~~~~~~~-------~~eL~ 230 (285)
T TIGR02320 167 GMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVP---------TSYYTTP-------TDEFR 230 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEec---------CCCCCCC-------HHHHH
Confidence 5899999999999999999996533356676665443211 34442222 1112233 45556
Q ss_pred hcCCCEEEEecccccc
Q 005965 311 EQGVDYFTIHAGVLLR 326 (667)
Q Consensus 311 eqGVDfmTIHaGv~~~ 326 (667)
+.||..+++-....+.
T Consensus 231 ~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 231 DAGISVVIYANHLLRA 246 (285)
T ss_pred HcCCCEEEEhHHHHHH
Confidence 7899998775444333
No 238
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=28.08 E-value=1.7e+02 Score=29.08 Aligned_cols=67 Identities=27% Similarity=0.319 Sum_probs=46.7
Q ss_pred CCcEe---eecCCCC---ChHHHHHHHHhcCCCCcccchhhhHHHHh--cCCCCCCCHHHHHHHHHHHHhcCCCEEEEec
Q 005965 250 GADTV---MDLSTGR---HIHETREWILRNSAVPVGTVPIYQALEKV--DGIAENLSWEVFRDTLIEQAEQGVDYFTIHA 321 (667)
Q Consensus 250 GADtV---MDLSTGg---di~~~R~~Il~nspvPVGTVPIYqAl~k~--~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHa 321 (667)
|||.| +|+.... ++.+.-+.|.+..+ +||-=.+... ||. -+.+.+..++.++.-++.|+||+.|=-
T Consensus 24 ~aD~vElR~D~~~~~~~~~~~~~~~~lr~~~~-----~piI~T~R~~~eGG~-~~~~~~~~~~ll~~~~~~~~d~vDiEl 97 (225)
T cd00502 24 GADAVELRVDLLEDPSIDDVAEQLSLLRELTP-----LPIIFTVRTKSEGGN-FEGSEEEYLELLEEALKLGPDYVDIEL 97 (225)
T ss_pred CCCEEEEEEeeccccchHHHHHHHHHHHHhCC-----CCEEEEEcccccCCC-cCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 99987 7887665 34444555555554 4554444322 444 478889999999999999999999864
Q ss_pred c
Q 005965 322 G 322 (667)
Q Consensus 322 G 322 (667)
-
T Consensus 98 ~ 98 (225)
T cd00502 98 D 98 (225)
T ss_pred c
Confidence 3
No 239
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=27.84 E-value=1.4e+02 Score=28.37 Aligned_cols=60 Identities=17% Similarity=0.135 Sum_probs=40.9
Q ss_pred HHHHHHHHhHhceeEeccC-C-----------CCCCCcc-CCCcHHHHHH----HHHHHHHHHHHHhcCCeEEeeCC
Q 005965 363 WDEILDICNQYDVALSIGD-G-----------LRPGSIY-DANDTAQFAE----LLTQGELTRRAWDKDVQVMNEGP 422 (667)
Q Consensus 363 FD~ileI~k~YDVtlSLGD-G-----------LRPG~ia-DA~D~AQ~~E----L~~LGEL~krA~e~gVQVMIEGP 422 (667)
+...++.+++++..|+|.| | ++|-.|- |+.--..+.+ ...+-.+.+.|...|++|++||-
T Consensus 134 ~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV 210 (240)
T cd01948 134 ALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGV 210 (240)
T ss_pred HHHHHHHHHHCCCeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEec
Confidence 6778888999999999976 2 3444332 3221112111 34567888999999999999984
No 240
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=27.53 E-value=5.4e+02 Score=26.41 Aligned_cols=94 Identities=23% Similarity=0.271 Sum_probs=62.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD 374 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YD 374 (667)
.+.+.+++...+..-.+.+==.+.-|.|..+.. --.=+|.....+++++.|++++
T Consensus 106 ~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~g 160 (237)
T COG1387 106 EDQDEEDYTERLIAAMSNGAVDILAHPGGRLLG-------------------------RIDRGAYKEDIEELIELAEKNG 160 (237)
T ss_pred cccCHHHHHHHHHHHHcCCCccEEecCCccccc-------------------------cccccccHHHHHHHHHHHHHhC
Confidence 677888888888888877655566787754333 1112455667777777777777
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC
Q 005965 375 VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM 427 (667)
Q Consensus 375 VtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl 427 (667)
+.|-+--- || .+....++++.|+|.|+.+-|=.=+|.|-
T Consensus 161 ~aleins~--~~------------~~~~~~~~~~~~~e~G~~~~i~tDaH~~~ 199 (237)
T COG1387 161 KALEINSR--PG------------RLDPNSEILRLARELGVKLAIGTDAHRPG 199 (237)
T ss_pred cEEeecCC--cC------------ccCchHHHHHHHHHhCCeEEeecCcCChh
Confidence 77766432 22 33345667777777777777777777773
No 241
>PRK13308 ureC urease subunit alpha; Reviewed
Probab=27.15 E-value=1.7e+02 Score=34.43 Aligned_cols=120 Identities=24% Similarity=0.346 Sum_probs=77.8
Q ss_pred HHHHHhCCcEeeecCCCC----------ChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 005965 244 QWATMWGADTVMDLSTGR----------HIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (667)
Q Consensus 244 ~~A~~~GADtVMDLSTGg----------di~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqG 313 (667)
+.|+.-|.-||++.-|+. +|+.+.+. .+..++.+|-. .+ |.... .+.|++|.+.|
T Consensus 149 ~aALagGVTTVi~gg~gPt~p~~t~g~~~i~~~l~a-a~~~pvN~g~~------gk--G~~s~------~aeL~eli~aG 213 (569)
T PRK13308 149 DHALASGITTMLGGGLGPTVGIDSGGPFNTGRMLQA-AEAWPVNFGFL------GR--GNSSK------PAALIEQVEAG 213 (569)
T ss_pred HHHHcCCCcEEecCCcCCCCCCCCCCHHHHHHHHHH-HhcCCccEEEE------cC--CcccC------HHHHHHHHHCC
Confidence 789999999999964442 24444443 33455555521 11 21111 35789999999
Q ss_pred CCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEeccCCCCCCCccCCCc
Q 005965 314 VDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSIGDGLRPGSIYDAND 393 (667)
Q Consensus 314 VDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D 393 (667)
+..|.+|- .|- -+| ..++++|+++++||+.+.+ =.|..+
T Consensus 214 A~GfKi~e--------------------------d~g-----~t~--~~i~~aL~~A~~~dv~Vai--------Hadtln 252 (569)
T PRK13308 214 ACGLKIHE--------------------------DWG-----AMP--AAIDTCLEVADEYDFQVQL--------HTDTLN 252 (569)
T ss_pred CCEEeecC--------------------------CCC-----CCH--HHHHHHHHHHHhcCCEEEE--------eCCCcC
Confidence 99999982 110 023 5899999999999999874 456667
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEE---eeC--CCCCC
Q 005965 394 TAQFAELLTQGELTRRAWDKDVQVM---NEG--PGHIP 426 (667)
Q Consensus 394 ~AQ~~EL~~LGEL~krA~e~gVQVM---IEG--PGHVP 426 (667)
++-|.|. ++.... |..+- +|| -||+|
T Consensus 253 e~g~~E~-t~~a~~------gr~iH~~H~egaggghap 283 (569)
T PRK13308 253 ESGFVED-TLAAIG------GRTIHMYHTEGAGGGHAP 283 (569)
T ss_pred cchHHHH-HHHHhc------CCeEEEEeccCCccCchh
Confidence 7777777 544433 44443 566 47988
No 242
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=27.15 E-value=3.2e+02 Score=32.46 Aligned_cols=108 Identities=18% Similarity=0.291 Sum_probs=62.3
Q ss_pred CCCCCCHHHHHHHHHH-------HHhcCCCEEEEecc---ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhh
Q 005965 293 IAENLSWEVFRDTLIE-------QAEQGVDYFTIHAG---VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEH 362 (667)
Q Consensus 293 ~~~~lt~e~~~d~iee-------QAeqGVDfmTIHaG---v~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~ 362 (667)
.+..||.+++-++|+. -.+.|.|.+-||+| +.-+.+.-..++.|. ..|||+.-. -.|+.
T Consensus 537 ~p~~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD--~yGGslenR-------~r~~~-- 605 (765)
T PRK08255 537 VPREMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTD--EYGGSLENR-------LRYPL-- 605 (765)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCC--CCCCCHHHH-------hHHHH--
Confidence 4578988888776654 34579999999998 444555444444444 469997432 12333
Q ss_pred HHHHHHHHhH---hc----eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEE-eeCCCC
Q 005965 363 WDEILDICNQ---YD----VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVM-NEGPGH 424 (667)
Q Consensus 363 FD~ileI~k~---YD----VtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVM-IEGPGH 424 (667)
+|++..|+ -| |-||..|.+..| .+ +.|. -+|+++..++||..+ |-++++
T Consensus 606 --eiv~~ir~~~~~~~~v~~ri~~~~~~~~g-----~~---~~~~---~~~~~~l~~~g~d~i~vs~g~~ 662 (765)
T PRK08255 606 --EVFRAVRAVWPAEKPMSVRISAHDWVEGG-----NT---PDDA---VEIARAFKAAGADLIDVSSGQV 662 (765)
T ss_pred --HHHHHHHHhcCCCCeeEEEEccccccCCC-----CC---HHHH---HHHHHHHHhcCCcEEEeCCCCC
Confidence 34444444 24 335554544322 11 2333 367777778899844 554444
No 243
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.09 E-value=82 Score=33.55 Aligned_cols=68 Identities=29% Similarity=0.325 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCcEee-ecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 005965 240 VYKVQWATMWGADTVM-DLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFT 318 (667)
Q Consensus 240 veKl~~A~~~GADtVM-DLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmT 318 (667)
++-+..|+++|||.|| |=-+-.++.+..+.+.+.. .+ ..+. ++-.||. | .+.|++-|+-||||+.
T Consensus 192 leea~~a~~agaDiI~LDn~~~e~l~~~v~~l~~~~-~~-~~~~----leaSGGI----~----~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 192 LEDALKAAKAGADIIMLDNMTPEEIREVIEALKREG-LR-ERVK----IEVSGGI----T----PENIEEYAKLDVDVIS 257 (278)
T ss_pred HHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHHhcC-cC-CCEE----EEEECCC----C----HHHHHHHHHcCCCEEE
Confidence 4556778899999996 4344444444444443221 00 1222 2222332 3 3678889999999997
Q ss_pred Eec
Q 005965 319 IHA 321 (667)
Q Consensus 319 IHa 321 (667)
+=+
T Consensus 258 ~ga 260 (278)
T PRK08385 258 LGA 260 (278)
T ss_pred eCh
Confidence 644
No 244
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=26.96 E-value=54 Score=32.27 Aligned_cols=63 Identities=27% Similarity=0.342 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCcEee-ecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Q 005965 241 YKVQWATMWGADTVM-DLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (667)
Q Consensus 241 eKl~~A~~~GADtVM-DLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTI 319 (667)
+.+..|+++|+|.|| |=.+-.++.++.+.+-...+= |- ++-.||. |. +.|.+-++.|||++.+
T Consensus 91 ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~~~~~~----v~----ie~SGGI----~~----~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLDNMSPEDLKEAVEELRELNPR----VK----IEASGGI----TL----ENIAEYAKTGVDVISV 154 (169)
T ss_dssp HHHHHHHHTT-SEEEEES-CHHHHHHHHHHHHHHTTT----SE----EEEESSS----ST----TTHHHHHHTT-SEEEE
T ss_pred HHHHHHHHhCCCEEEecCcCHHHHHHHHHHHhhcCCc----EE----EEEECCC----CH----HHHHHHHhcCCCEEEc
Confidence 446678999999998 333333444444433122221 11 1111332 22 5678889999999976
No 245
>PRK02227 hypothetical protein; Provisional
Probab=26.92 E-value=2.2e+02 Score=30.11 Aligned_cols=157 Identities=17% Similarity=0.152 Sum_probs=89.0
Q ss_pred HHHHHHHHHhCCcEeeec------CCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 005965 240 VYKVQWATMWGADTVMDL------STGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (667)
Q Consensus 240 veKl~~A~~~GADtVMDL------STGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqG 313 (667)
++.+..|++.|||- .|+ |-|.+...+=+.|.+..+ |..|+=-++ |+. .+.+......+..-+.-|
T Consensus 10 ~eEA~~Al~~GaDi-IDvK~P~~GaLGA~~p~vir~Iv~~~~---~~~pvSAti----GD~-p~~p~~~~~aa~~~a~~G 80 (238)
T PRK02227 10 LEEALEALAGGADI-IDVKNPKEGSLGANFPWVIREIVAAVP---GRKPVSATI----GDV-PYKPGTISLAALGAAATG 80 (238)
T ss_pred HHHHHHHHhcCCCE-EEccCCCCCCCCCCCHHHHHHHHHHhC---CCCCceeec----cCC-CCCchHHHHHHHHHHhhC
Confidence 45577899999984 477 446666665566666555 445554443 442 345577888888889999
Q ss_pred CCEEEEeccccc-----ccccccc--CcccCccccccHHHHHHHHHcCCcCchhhh--------HHHHHHHHhHhceeEe
Q 005965 314 VDYFTIHAGVLL-----RYIPLTA--KRMTGIVSRGGSIHAKWCLAYHKENFAYEH--------WDEILDICNQYDVALS 378 (667)
Q Consensus 314 VDfmTIHaGv~~-----~~l~~~~--~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~--------FD~ileI~k~YDVtlS 378 (667)
|||+-| |+-. +.++... -|-.....++-.+++ -+|.. ..+|++++++.....-
T Consensus 81 vDyVKv--Gl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVa----------v~yaD~~r~~~~~~~~l~~~a~~aGf~g~ 148 (238)
T PRK02227 81 ADYVKV--GLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVA----------AGYADAHRVGSVSPLSLPAIAADAGFDGA 148 (238)
T ss_pred CCEEEE--cCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEE----------EEecccccccCCChHHHHHHHHHcCCCEE
Confidence 999754 4321 1111100 000000011111111 12322 2388999988887766
Q ss_pred ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeC
Q 005965 379 IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEG 421 (667)
Q Consensus 379 LGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEG 421 (667)
+=|.- +-|..---++.-+..|.+.++.|+++|.++=+=|
T Consensus 149 MlDTa----~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~gLAG 187 (238)
T PRK02227 149 MLDTA----IKDGKSLFDHMDEEELAEFVAEARSHGLMSALAG 187 (238)
T ss_pred EEecc----cCCCcchHhhCCHHHHHHHHHHHHHcccHhHhcc
Confidence 65653 2233333334444456678899999999887755
No 246
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=26.57 E-value=8e+02 Score=26.44 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCEEEEec--cccccccc--cccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhce
Q 005965 300 EVFRDTLIEQAEQGVDYFTIHA--GVLLRYIP--LTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDV 375 (667)
Q Consensus 300 e~~~d~ieeQAeqGVDfmTIHa--Gv~~~~l~--~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDV 375 (667)
++|.+..++-.+.|.|.+=||+ |-++...- ...+|--.- |||+ ||-.=--.+=|-.|-++.+.
T Consensus 141 ~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~y---GGsl----------enR~r~~~eiv~~ir~~vg~ 207 (343)
T cd04734 141 AAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEY---GGSL----------ENRMRFLLEVLAAVRAAVGP 207 (343)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcC---CCCH----------HHHhHHHHHHHHHHHHHcCC
Q ss_pred eEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcC-Ce-EEeeCCCCCCC--------------CchHHHHHHHHH
Q 005965 376 ALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKD-VQ-VMNEGPGHIPM--------------HKIPENMQKQLE 439 (667)
Q Consensus 376 tlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~g-VQ-VMIEGPGHVPl--------------~~I~~Nv~lqk~ 439 (667)
.+++| +|-+...+-.+.-...|.+ +|+++.-++| |+ +-|-+..+... ..-.+-.+.-|+
T Consensus 208 ~~~v~--iRl~~~~~~~~G~~~~e~~---~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~ 282 (343)
T cd04734 208 DFIVG--IRISGDEDTEGGLSPDEAL---EIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQ 282 (343)
T ss_pred CCeEE--EEeehhhccCCCCCHHHHH---HHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHH
Q ss_pred hcCCCCccccCccccccCCCchhHHHhHHHHHhhhcccceeee
Q 005965 440 WCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCY 482 (667)
Q Consensus 440 lC~~APfYvLGPLvTDIApGYDHItsAIGaA~aa~~GadfLCY 482 (667)
.+ +-|.++-|=+.| -.-.-.+...-++||+..
T Consensus 283 ~~-~ipvi~~G~i~~----------~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 283 AV-DLPVFHAGRIRD----------PAEAEQALAAGHADMVGM 314 (343)
T ss_pred Hc-CCCEEeeCCCCC----------HHHHHHHHHcCCCCeeee
No 247
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=26.55 E-value=1.5e+02 Score=28.56 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=47.9
Q ss_pred hHHHHHHHHhHh-----ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHH
Q 005965 362 HWDEILDICNQY-----DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQK 436 (667)
Q Consensus 362 ~FD~ileI~k~Y-----DVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~l 436 (667)
.+++|+++.+++ -||||=|+ + |.. .|.+|+++++++|..+.||. |+.+-+ +
T Consensus 47 t~eel~~~I~~~~~~~~gVt~SGGE-l------------~~~---~l~~ll~~lk~~Gl~i~l~T-g~~~~~-~------ 102 (147)
T TIGR02826 47 TPEYLTKTLDKYRSLISCVLFLGGE-W------------NRE---ALLSLLKIFKEKGLKTCLYT-GLEPKD-I------ 102 (147)
T ss_pred CHHHHHHHHHHhCCCCCEEEEechh-c------------CHH---HHHHHHHHHHHCCCCEEEEC-CCCCHH-H------
Confidence 678899998887 38898887 2 333 45677778889999999997 776532 2
Q ss_pred HHHhcCCCCccccCcccccc
Q 005965 437 QLEWCNEAPFYTLGPLTTDI 456 (667)
Q Consensus 437 qk~lC~~APfYvLGPLvTDI 456 (667)
..+++...=+.+.||-+-+-
T Consensus 103 ~~~il~~iD~l~~g~y~~~~ 122 (147)
T TIGR02826 103 PLELVQHLDYLKTGRWIHTR 122 (147)
T ss_pred HHHHHHhCCEEEEChHHHHc
Confidence 23333444566777754433
No 248
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=26.43 E-value=7.8e+02 Score=25.94 Aligned_cols=91 Identities=21% Similarity=0.305 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH-hcee
Q 005965 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ-YDVA 376 (667)
Q Consensus 298 t~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~-YDVt 376 (667)
+.++|.+..+.-.+.|+|.+-||+|- | .++++. .-|||.+.. || +...+|++-.++ -++.
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gc-----P--~~~~~~--~~~Gs~l~~--------~~--~~~~ei~~~vr~~~~~p 133 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGC-----P--VPKITK--KGAGSALLR--------DP--DLIGKIVKAVVDAVDIP 133 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCC-----C--HHHhcC--CCccchHhC--------CH--HHHHHHHHHHHhhcCCC
Confidence 67899999887777899999999994 2 122221 346775432 22 222333433333 2333
Q ss_pred EeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEE
Q 005965 377 LSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVM 418 (667)
Q Consensus 377 lSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVM 418 (667)
+|+ -+|.|- |-++ .++-++++++.+.||...
T Consensus 134 v~v--Kir~g~--~~~~-------~~~~~~a~~l~~~G~d~i 164 (319)
T TIGR00737 134 VTV--KIRIGW--DDAH-------INAVEAARIAEDAGAQAV 164 (319)
T ss_pred EEE--EEEccc--CCCc-------chHHHHHHHHHHhCCCEE
Confidence 332 255553 1111 124578888888888655
No 249
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=26.31 E-value=7.2e+02 Score=27.39 Aligned_cols=68 Identities=25% Similarity=0.268 Sum_probs=37.0
Q ss_pred HHHHHHHhCCcEeeecCCCC--ChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Q 005965 242 KVQWATMWGADTVMDLSTGR--HIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTI 319 (667)
Q Consensus 242 Kl~~A~~~GADtVMDLSTGg--di~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTI 319 (667)
-++.|.++|||-|.=..... ++.++++.+-+ ..++++- | -+|.+.-.+.+++-.+.|+||+++
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~-~G~~~~~-----------g---~~s~~t~~e~~~~a~~~GaD~I~~ 137 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAARK-YGVRLMA-----------D---LINVPDPVKRAVELEELGVDYINV 137 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHH-cCCEEEE-----------E---ecCCCCHHHHHHHHHhcCCCEEEE
Confidence 55678999999877332222 24455555443 2233221 0 022211122344445679999999
Q ss_pred ecccc
Q 005965 320 HAGVL 324 (667)
Q Consensus 320 HaGv~ 324 (667)
|.|.+
T Consensus 138 ~pg~~ 142 (430)
T PRK07028 138 HVGID 142 (430)
T ss_pred Eeccc
Confidence 98874
No 250
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=26.29 E-value=1.2e+02 Score=32.48 Aligned_cols=126 Identities=19% Similarity=0.140 Sum_probs=72.3
Q ss_pred ccCcccCccccccHHHHHHH-HHcCCcCchhhhHHHHHHHHhHhc-------------------------eeEeccCCCC
Q 005965 331 TAKRMTGIVSRGGSIHAKWC-LAYHKENFAYEHWDEILDICNQYD-------------------------VALSIGDGLR 384 (667)
Q Consensus 331 ~~~RvtgIVSRGGSi~a~Wm-l~h~~ENpLYe~FD~ileI~k~YD-------------------------VtlSLGDGLR 384 (667)
...|+.|.===||+|+ +-+ +-.+. +.||+|++++++.| ++=|.|.-.+
T Consensus 121 ~~~Rv~Gt~iGGGTf~-GL~~LL~~~-----~~~~el~~lA~~G~~~~vDl~V~dIYg~~y~~~~L~~d~iASsfGkv~~ 194 (279)
T TIGR00555 121 NYERVGGTSLGGGTFL-GLGKLLTGI-----QTFDELLEMAQHGDRTNVDLLVGDIYGGDYSESGLDGSLTASSFGKVLS 194 (279)
T ss_pred cEEEEcCccccHHHHH-HHHHHHcCC-----CCHHHHHHHHHcCCCcccccccccccCCCCCCCCCCcceeeeccchhhc
Confidence 4579999866666666 655 33333 78999999999998 4455553333
Q ss_pred CCCccCCCcHHHHHHH-----HHHHHHHH-HHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCccccCccccccCC
Q 005965 385 PGSIYDANDTAQFAEL-----LTQGELTR-RAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAP 458 (667)
Q Consensus 385 PG~iaDA~D~AQ~~EL-----~~LGEL~k-rA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfYvLGPLvTDIAp 458 (667)
..--.++..+.-.+=| .++|.|+. +|..+++.-++=.-| ||...+.-++.-.+..+ ||- ..=+-|
T Consensus 195 ~~~~~~~~~eDiAaSLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg--~L~~~~~l~~~~~~~~~---~~~----~~~ifp 265 (279)
T TIGR00555 195 KHLDQSFSPEDIAASLLGLIGNNIGQIAYLCALRYNIDRIVFIGS--FLRNNQLLMKVLSYATN---FWS----KKALFL 265 (279)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC--cccCCHHHHHHHHHHHh---hcC----ceEEEE
Confidence 2000122222222211 26677766 667788877665544 23322222332222222 333 333678
Q ss_pred CchhHHHhHHHHH
Q 005965 459 GYDHITSAIGAAN 471 (667)
Q Consensus 459 GYDHItsAIGaA~ 471 (667)
-+.+-..|||||+
T Consensus 266 ~h~~y~gAlGAaL 278 (279)
T TIGR00555 266 EHEGYSGAIGALL 278 (279)
T ss_pred CCcchHHHhhhcc
Confidence 8999999999986
No 251
>TIGR02967 guan_deamin guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model.
Probab=26.29 E-value=3.4e+02 Score=28.91 Aligned_cols=98 Identities=18% Similarity=0.112 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHHhc-CCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCC--cCchhhhH----HHHH
Q 005965 295 ENLSWEVFRDTLIEQAEQ-GVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHK--ENFAYEHW----DEIL 367 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeq-GVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~--ENpLYe~F----D~il 367 (667)
...+.|.|...++.-.+. |+ .+++|+.=+...+.....+.-. ..-...|+..++- .+.+..|. |+-+
T Consensus 181 ~~~s~e~l~~~~~~A~~~~g~-~v~~H~~e~~~~~~~~~~~~~~-----~~~~~~~l~~~g~lg~~~~~~H~~~~~~~~~ 254 (401)
T TIGR02967 181 PTSSPEQLAAAGELAKEYPDV-YVQTHLSENKDEIAWVKELFPE-----AKDYLDVYDHYGLLGRRSVFAHCIHLSDEEC 254 (401)
T ss_pred CcCcHHHHHHHHHHHHhCCCC-eeEEEECCCchHHHHHHHHcCC-----CCcHHHHHHHCCCCCCCeEEEecccCCHHHH
Confidence 346677776666665566 88 5679997444433322111100 0012345544442 22233332 4578
Q ss_pred HHHhHhceeEe--------ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 005965 368 DICNQYDVALS--------IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (667)
Q Consensus 368 eI~k~YDVtlS--------LGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (667)
+++++.++.++ ||+|+-| ++.++++||.|.+
T Consensus 255 ~~l~~~g~~v~~~P~~~~~~~~g~~~---------------------~~~~~~~Gv~v~l 293 (401)
T TIGR02967 255 QRLAETGAAIAHCPTSNLFLGSGLFN---------------------LKKALEHGVRVGL 293 (401)
T ss_pred HHHHHcCCeEEEChHHHHHhccCCCC---------------------HHHHHHCCCeEEE
Confidence 99999998775 4554332 4556889999988
No 252
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=26.28 E-value=40 Score=33.68 Aligned_cols=71 Identities=30% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHhCCcEeeecCCC-------CChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHH---hc
Q 005965 243 VQWATMWGADTVMDLSTG-------RHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQA---EQ 312 (667)
Q Consensus 243 l~~A~~~GADtVMDLSTG-------gdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQA---eq 312 (667)
.+.|.+.|||-|= .||| +|...+|+-+ +.+++| -+.-.++-|.+ +.++|+++++.-. +.
T Consensus 152 ~ria~e~GaD~vK-t~tg~~~~~t~~~~~~~~~~~-~~~~~p------~~~~Vk~sGGi---~~~~~~~~l~~a~~~i~a 220 (236)
T PF01791_consen 152 ARIAAELGADFVK-TSTGKPVGATPEDVELMRKAV-EAAPVP------GKVGVKASGGI---DAEDFLRTLEDALEFIEA 220 (236)
T ss_dssp HHHHHHTT-SEEE-EE-SSSSCSHHHHHHHHHHHH-HTHSST------TTSEEEEESSS---SHHHHHHSHHHHHHHHHT
T ss_pred HHHHHHhCCCEEE-ecCCccccccHHHHHHHHHHH-HhcCCC------cceEEEEeCCC---ChHHHHHHHHHHHHHHHc
Q ss_pred CCCEEEEecccc
Q 005965 313 GVDYFTIHAGVL 324 (667)
Q Consensus 313 GVDfmTIHaGv~ 324 (667)
|.|++-+=+|.+
T Consensus 221 Ga~~~G~~~Gr~ 232 (236)
T PF01791_consen 221 GADRIGTSSGRN 232 (236)
T ss_dssp THSEEEEEEHHH
T ss_pred CChhHHHHHHHH
No 253
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=26.24 E-value=1.2e+02 Score=32.43 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=54.4
Q ss_pred hhhHHHHHHH----HhHhceeEeccCCCCCCCccCCCcHHHHHHH-------------------------HHHHHHHHHH
Q 005965 360 YEHWDEILDI----CNQYDVALSIGDGLRPGSIYDANDTAQFAEL-------------------------LTQGELTRRA 410 (667)
Q Consensus 360 Ye~FD~ileI----~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL-------------------------~~LGEL~krA 410 (667)
..||++|+.. |.++.+.+-++=|+-|+||-|-.+. |+.|| ..+-+-.+-|
T Consensus 45 ~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~iP~e~~~-~l~~L~~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA 123 (254)
T COG1099 45 LDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAIPPELEE-VLEELEELLSNEDVVAIGEIGLEEATDEEKEVFREQLELA 123 (254)
T ss_pred HHHHHHHHccchhhHHhhCceeeEEeccCCCCCCchHHH-HHHHHHhhcccCCeeEeeecccccCCHHHHHHHHHHHHHH
Confidence 4678888766 8899999999999999998876433 44443 4455667889
Q ss_pred HhcCCeEEeeCCCCCCCCchHHHHHHHHHhcC
Q 005965 411 WDKDVQVMNEGPGHIPMHKIPENMQKQLEWCN 442 (667)
Q Consensus 411 ~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~ 442 (667)
++.||.||| |-|=..=++-..+..++|.
T Consensus 124 ~e~dvPviV----HTPr~nK~e~t~~ildi~~ 151 (254)
T COG1099 124 RELDVPVIV----HTPRRNKKEATSKILDILI 151 (254)
T ss_pred HHcCCcEEE----eCCCCcchhHHHHHHHHHH
Confidence 999999999 6664333333444455554
No 254
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=26.18 E-value=54 Score=34.96 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEec
Q 005965 296 NLSWEVFRDTLIEQAEQGVDYFTIHA 321 (667)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDfmTIHa 321 (667)
-++.+.+.+.|..-|.-+...+-+|-
T Consensus 14 f~~~~~ik~~Id~ma~~KlN~lh~Hl 39 (311)
T cd06570 14 FIPVAVIKRQLDAMASVKLNVFHWHL 39 (311)
T ss_pred CcCHHHHHHHHHHHHHhCCeEEEEEE
Confidence 36789999999999999999999996
No 255
>PF10515 APP_amyloid: beta-amyloid precursor protein C-terminus; InterPro: IPR019543 This is the amyloid, C-terminal, protein of the beta-Amyloid precursor protein (APP) which is a conserved and ubiquitous transmembrane glycoprotein strongly implicated in the pathogenesis of Alzheimer's disease but whose normal biological function is unknown. The C-terminal 100 residues are released and aggregate into amyloid deposits which are strongly implicated in the pathology of Alzheimer's disease plaque-formation. The domain is associated with IPR008154 from INTERPRO, further towards the N terminus. ; PDB: 2ROZ_A 3DXD_D 1X11_D 2LP1_A 2LOH_A 3MXC_L 3MXY_L 3DXC_B 3DXE_D 3L81_B ....
Probab=26.11 E-value=13 Score=31.22 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=14.7
Q ss_pred HHHHHHcCCcCchhhhHH
Q 005965 347 AKWCLAYHKENFAYEHWD 364 (667)
Q Consensus 347 a~Wml~h~~ENpLYe~FD 364 (667)
..=|..|+=|||-|..||
T Consensus 35 ~~~mQ~nGYENPTYkyfE 52 (52)
T PF10515_consen 35 LSNMQNNGYENPTYKYFE 52 (52)
T ss_dssp HHHHHCTEEESCTCHHCC
T ss_pred HHHHHhcCCcCCceeccC
Confidence 345788999999999886
No 256
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=26.07 E-value=2.3e+02 Score=28.96 Aligned_cols=82 Identities=15% Similarity=0.104 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHH---hHh-
Q 005965 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDIC---NQY- 373 (667)
Q Consensus 298 t~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~---k~Y- 373 (667)
+.+++.+.++.-.+.|+|++-||++--. .. ..|+ +..+++.++||+ |+.
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~-----~~------~~~~----------------~~~~~~~~~eiv~~vr~~~ 161 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPN-----VG------GGRQ----------------LGQDPEAVANLLKAVKAAV 161 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCC-----CC------CCcc----------------cccCHHHHHHHHHHHHHcc
Confidence 6678888877777779999999997321 00 0111 334455554444 333
Q ss_pred ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 005965 374 DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (667)
Q Consensus 374 DVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (667)
|+.+++ .|||+- |. ...-++++.+.++||..++
T Consensus 162 ~~pv~v--Kl~~~~-----~~------~~~~~~a~~l~~~Gad~i~ 194 (289)
T cd02810 162 DIPLLV--KLSPYF-----DL------EDIVELAKAAERAGADGLT 194 (289)
T ss_pred CCCEEE--EeCCCC-----CH------HHHHHHHHHHHHcCCCEEE
Confidence 544444 355541 21 2245677888899998766
No 257
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=25.92 E-value=83 Score=32.50 Aligned_cols=91 Identities=21% Similarity=0.159 Sum_probs=53.0
Q ss_pred CceeEeeccccCCCCCChHHHHHHHHHHHHhCCcEe-eecCCC--------CChHHHHHHHHhcCCCCcccchhhhHHHH
Q 005965 219 FLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTV-MDLSTG--------RHIHETREWILRNSAVPVGTVPIYQALEK 289 (667)
Q Consensus 219 l~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADtV-MDLSTG--------gdi~~~R~~Il~nspvPVGTVPIYqAl~k 289 (667)
..+-|+++|.... .+..+|..++...++.|||.| ..||.- ++..+..+.|++... -.-.+|++= |
T Consensus 95 ~~~pvi~Si~~~~--~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~-~~~~~Pv~v---K 168 (295)
T PF01180_consen 95 VDIPVIASINGDS--EEEIEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVR-EAVDIPVFV---K 168 (295)
T ss_dssp -CEEEEEEE-TSS--SGHHHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHH-HHHSSEEEE---E
T ss_pred cceeEEEEeecCC--chhHHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHH-hccCCCEEE---E
Confidence 3345566664444 567777777777777999976 566641 123333333432211 111444432 2
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCCCEEE
Q 005965 290 VDGIAENLSWEVFRDTLIEQAEQGVDYFT 318 (667)
Q Consensus 290 ~~g~~~~lt~e~~~d~ieeQAeqGVDfmT 318 (667)
. .-+++....+..+.+.++.|+|.++
T Consensus 169 L---~p~~~~~~~~~~~~~~~~~g~~gi~ 194 (295)
T PF01180_consen 169 L---SPNFTDIEPFAIAAELAADGADGIV 194 (295)
T ss_dssp E----STSSCHHHHHHHHHHHTHTECEEE
T ss_pred e---cCCCCchHHHHHHHHhhccceeEEE
Confidence 2 3466777778888888899999988
No 258
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=25.89 E-value=2.2e+02 Score=29.07 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=60.7
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCC-eEEe-eCC---CCCCCCchHHHHHHHHHhcCCCCcccc
Q 005965 375 VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDV-QVMN-EGP---GHIPMHKIPENMQKQLEWCNEAPFYTL 449 (667)
Q Consensus 375 VtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gV-QVMI-EGP---GHVPl~~I~~Nv~lqk~lC~~APfYvL 449 (667)
|++|+|..-+.|... ++.+. -..||.+-|+..|| .+.. -.| -.++.+++...+.-..+-+. |=.|+
T Consensus 44 ~~lT~Ge~g~~~~~~------~l~~~-R~~E~~~a~~~LGv~~~~~l~~~~~~~~~~~~~~~~~L~~ii~~~~--P~~V~ 114 (237)
T COG2120 44 VCLTLGEAGENGGEL------ELGAV-RRAEARAAARVLGVRETIFLGFPDTGADADPEEITGALVAIIRRLR--PDVVF 114 (237)
T ss_pred EEccCCcccccCCcc------chHHH-HHHHHHHHHHhcCCCcceecCCCccccccChHHHHHHHHHHHHHhC--CCEEE
Confidence 678999988888766 44443 45899999999999 3333 334 45778888887777777666 66666
Q ss_pred CccccccCCCchhHHHh
Q 005965 450 GPLTTDIAPGYDHITSA 466 (667)
Q Consensus 450 GPLvTDIApGYDHItsA 466 (667)
=|-.-|..++.||+...
T Consensus 115 t~~~~d~~~HpDH~~~~ 131 (237)
T COG2120 115 TPYPDDGYGHPDHRATH 131 (237)
T ss_pred ecCCCCCCCCCChHHHH
Confidence 66666668999999865
No 259
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=25.82 E-value=5.9e+02 Score=24.32 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=13.6
Q ss_pred HHHHHhcCCCEEEEecc
Q 005965 306 LIEQAEQGVDYFTIHAG 322 (667)
Q Consensus 306 ieeQAeqGVDfmTIHaG 322 (667)
++.-++.|+||+++|+-
T Consensus 70 ~~~~~~aGad~i~~h~~ 86 (202)
T cd04726 70 AEMAFKAGADIVTVLGA 86 (202)
T ss_pred HHHHHhcCCCEEEEEee
Confidence 45667889999999963
No 260
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=25.79 E-value=7.7e+02 Score=25.61 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeccc
Q 005965 299 WEVFRDTLIEQAEQGVDYFTIHAGV 323 (667)
Q Consensus 299 ~e~~~d~ieeQAeqGVDfmTIHaGv 323 (667)
.+++.+..+.-.+.|||.+++|..+
T Consensus 168 ~~~~~~~a~~l~~~G~d~i~~~nt~ 192 (301)
T PRK07259 168 VTDIVEIAKAAEEAGADGLSLINTL 192 (301)
T ss_pred chhHHHHHHHHHHcCCCEEEEEccc
Confidence 3566677776677899999997654
No 261
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=25.78 E-value=4.2e+02 Score=29.53 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcC-CCC
Q 005965 240 VYKVQWATMWGADTVMDLSTGRHIHETREWILRNS-AVP 277 (667)
Q Consensus 240 veKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~ns-pvP 277 (667)
.+.++.|.++|+.+|+ |..---..--|++=+||. .+|
T Consensus 149 ~~li~RA~~aG~~alv-lTvD~p~~g~R~~d~r~~~~~p 186 (367)
T TIGR02708 149 RDIMDRVKADGAKAIV-LTADATVGGNREVDVRNGFVFP 186 (367)
T ss_pred HHHHHHHHHcCCCEEE-EecCCCCCCcchhhhhcCCCCC
Confidence 3567889999999987 322222223366666664 344
No 262
>PRK08508 biotin synthase; Provisional
Probab=25.69 E-value=7.3e+02 Score=25.88 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHhcCCCEEEE
Q 005965 297 LSWEVFRDTLIEQAEQGVDYFTI 319 (667)
Q Consensus 297 lt~e~~~d~ieeQAeqGVDfmTI 319 (667)
+++|++.+.+++-.+.|+.-|.+
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~l 62 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCL 62 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE
Confidence 79999999998888889877665
No 263
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=25.48 E-value=8.2e+02 Score=25.87 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecc
Q 005965 297 LSWEVFRDTLIEQAE-QGVDYFTIHAG 322 (667)
Q Consensus 297 lt~e~~~d~ieeQAe-qGVDfmTIHaG 322 (667)
++.+++.+.++.-.+ .|+.+..||+-
T Consensus 151 ~~~~~~~~~~~~~~~~~~l~l~Glh~h 177 (382)
T cd06839 151 IDVEELPAVLARIAALPNLRFVGLHIY 177 (382)
T ss_pred CCHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 346666555544333 67888777774
No 264
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=25.42 E-value=6.1e+02 Score=26.72 Aligned_cols=113 Identities=20% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcC--CCCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 005965 243 VQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDG--IAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (667)
Q Consensus 243 l~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g--~~~~lt~e~~~d~ieeQAeqGVDfmTIH 320 (667)
.+.|.++|||.+.=|-.. ++..|...| ....++++ -++=+...++-+...+--+-|||++-+|
T Consensus 73 ~~ma~~aGAd~~tV~g~A-~~~TI~~~i--------------~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H 137 (217)
T COG0269 73 ARMAFEAGADWVTVLGAA-DDATIKKAI--------------KVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILH 137 (217)
T ss_pred HHHHHHcCCCEEEEEecC-CHHHHHHHH--------------HHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEE
Q ss_pred ccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc--eeEeccCCCCC-------------
Q 005965 321 AGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD--VALSIGDGLRP------------- 385 (667)
Q Consensus 321 aGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YD--VtlSLGDGLRP------------- 385 (667)
-|+-.+..-..-+ +|+|-+|-+--+ +.+|..=|++|
T Consensus 138 ~g~D~q~~G~~~~-----------------------------~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~~~i 188 (217)
T COG0269 138 RGRDAQAAGKSWG-----------------------------EDDLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIGADI 188 (217)
T ss_pred ecccHhhcCCCcc-----------------------------HHHHHHHHHhhccCceEEEecCCCHHHHHHHhcCCCCE
Q ss_pred ----CCccCCCcHHHHHH
Q 005965 386 ----GSIYDANDTAQFAE 399 (667)
Q Consensus 386 ----G~iaDA~D~AQ~~E 399 (667)
|+|.+|.|.++.++
T Consensus 189 vIvGraIt~a~dp~~~a~ 206 (217)
T COG0269 189 VIVGRAITGAKDPAEAAR 206 (217)
T ss_pred EEECchhcCCCCHHHHHH
No 265
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=25.35 E-value=2.4e+02 Score=26.19 Aligned_cols=23 Identities=13% Similarity=0.109 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhcCCCEEEEecc
Q 005965 300 EVFRDTLIEQAEQGVDYFTIHAG 322 (667)
Q Consensus 300 e~~~d~ieeQAeqGVDfmTIHaG 322 (667)
+++.+...+-.+.||.+++|..|
T Consensus 117 ~~~~~~a~~lk~~gi~i~~ig~g 139 (164)
T cd01482 117 DDVELPARVLRNLGVNVFAVGVK 139 (164)
T ss_pred chHHHHHHHHHHCCCEEEEEecC
Confidence 45555555556789999999776
No 266
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=25.35 E-value=8.5e+02 Score=25.97 Aligned_cols=120 Identities=15% Similarity=0.157 Sum_probs=68.3
Q ss_pred cCCceeEeeccccCCCCCChHHHHHHHHHHHH-h--CCcEeeecCCCCChHHHHHHHHh---------cCCCCcccchhh
Q 005965 217 RNFLVKVNANIGNSAVASSIEEEVYKVQWATM-W--GADTVMDLSTGRHIHETREWILR---------NSAVPVGTVPIY 284 (667)
Q Consensus 217 ~gl~tKVNANIGtS~~~~~ieeEveKl~~A~~-~--GADtVMDLSTGgdi~~~R~~Il~---------nspvPVGTVPIY 284 (667)
+.|++||.. .+++++++.++...+ . +.+-.+|--.+=+.++.++.+=+ .-|+|....--|
T Consensus 160 ~~~KiKvg~--------~~~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~~~~iEeP~~~~~~~~~ 231 (365)
T cd03318 160 RRFKLKMGA--------RPPADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGVELIEQPVPRENLDGL 231 (365)
T ss_pred eEEEEEeCC--------CChHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCcceeeCCCCcccHHHH
Confidence 456677631 256777766655433 2 35567788766777777654322 335566665556
Q ss_pred hHHHHhcCCCC-----CCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCch
Q 005965 285 QALEKVDGIAE-----NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFA 359 (667)
Q Consensus 285 qAl~k~~g~~~-----~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpL 359 (667)
+.|.+..+.+. -.+.+++++.|+. +.||++-+- -.|+-||
T Consensus 232 ~~l~~~~~~pia~dE~~~~~~~~~~~i~~---~~~d~~~~d-----------~~~~GGi--------------------- 276 (365)
T cd03318 232 ARLRSRNRVPIMADESVSGPADAFELARR---GAADVFSLK-----------IAKSGGL--------------------- 276 (365)
T ss_pred HHHHhhcCCCEEcCcccCCHHHHHHHHHh---CCCCeEEEe-----------ecccCCH---------------------
Confidence 66654322221 1244566655554 346665221 1233232
Q ss_pred hhhHHHHHHHHhHhceeEecc
Q 005965 360 YEHWDEILDICNQYDVALSIG 380 (667)
Q Consensus 360 Ye~FD~ileI~k~YDVtlSLG 380 (667)
+.+-+++++|++|++.+..|
T Consensus 277 -t~~~~~~~~a~~~gi~~~~~ 296 (365)
T cd03318 277 -RRAQKVAAIAEAAGIALYGG 296 (365)
T ss_pred -HHHHHHHHHHHHcCCceeec
Confidence 67788899999999887765
No 267
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=24.50 E-value=3.3e+02 Score=25.56 Aligned_cols=106 Identities=12% Similarity=0.077 Sum_probs=56.1
Q ss_pred HHHHHHHHhCCcEeeecCCCCC-------hHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcC
Q 005965 241 YKVQWATMWGADTVMDLSTGRH-------IHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQG 313 (667)
Q Consensus 241 eKl~~A~~~GADtVMDLSTGgd-------i~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqG 313 (667)
+=+..+++.|.-||+|.++... +..+.+.+-+.+.+ -.+..+.+.... ....+...+.+.+.|.+....|
T Consensus 39 ~~~~~~~~~Gvttv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~ 115 (275)
T cd01292 39 RALEALLAGGVTTVVDMGSTPPPTTTKAAIEAVAEAARASAGI--RVVLGLGIPGVP-AAVDEDAEALLLELLRRGLELG 115 (275)
T ss_pred HHHHHHHhcCceEEEeeEeecCccccchHHHHHHHHHHHhcCe--eeEEeccCCCCc-cccchhHHHHHHHHHHHHHhcC
Confidence 3356689999999999876543 45666665443211 111111111100 0001112234444444433346
Q ss_pred CCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 005965 314 VDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (667)
Q Consensus 314 VDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSL 379 (667)
+..+.+|..-... ++--+.|.++++.+++|++.+.+
T Consensus 116 ~~gi~~~~~~~~~------------------------------~~~~~~~~~~~~~a~~~~~~i~~ 151 (275)
T cd01292 116 AVGLKLAGPYTAT------------------------------GLSDESLRRVLEEARKLGLPVVI 151 (275)
T ss_pred CeeEeeCCCCCCC------------------------------CCCcHHHHHHHHHHHHcCCeEEE
Confidence 7666666532110 03356889999999999987764
No 268
>PRK06267 hypothetical protein; Provisional
Probab=24.22 E-value=9.3e+02 Score=26.05 Aligned_cols=33 Identities=12% Similarity=-0.024 Sum_probs=27.5
Q ss_pred CcccccCCCChhHHHHHHHHHHHHHHHhhhhcC
Q 005965 484 TPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKG 516 (667)
Q Consensus 484 TPaEHLgLP~~eDVreGVIA~kIAAHaaDlaKg 516 (667)
||.++...|+.+++..=+-++||.-.-+.|..|
T Consensus 210 Tp~~~~~~~s~~e~lr~ia~~Rl~lP~~~I~~~ 242 (350)
T PRK06267 210 TIFENKPSVTTLEYMNWVSSVRLNFPKIKIITG 242 (350)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHCCCCCcchh
Confidence 777888889999999999999998876666554
No 269
>cd01298 ATZ_TRZ_like TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases. Atrazine, a chlorinated herbizide, can be catabolized by a variety of different bacteria. The first three steps of the atrazine dehalogenation pathway are catalyzed by atrazine chlorohydrolase (AtzA), hydroxyatrazine ethylaminohydrolase (AtzB), and N-isopropylammelide N-isopropylaminohydrolase (AtzC). All three enzymes belong to the superfamily of metal dependent hydrolases. AtzA and AtzB, beside other related enzymes are represented in this CD.
Probab=24.15 E-value=2.7e+02 Score=29.02 Aligned_cols=19 Identities=16% Similarity=-0.034 Sum_probs=13.8
Q ss_pred HHHHHHHhCCcEeeecCCC
Q 005965 242 KVQWATMWGADTVMDLSTG 260 (667)
Q Consensus 242 Kl~~A~~~GADtVMDLSTG 260 (667)
-+..+++.|.-||+|....
T Consensus 106 ~~~~~l~~GvTtv~d~~~~ 124 (411)
T cd01298 106 ALAEMIRSGTTTFADMYFF 124 (411)
T ss_pred HHHHHHhcCccEEECcccc
Confidence 3555678999999987543
No 270
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=24.08 E-value=78 Score=32.32 Aligned_cols=35 Identities=34% Similarity=0.509 Sum_probs=27.7
Q ss_pred HHHHHHHHhHhceeEecc-CCCCCCCccCCCcHHHH
Q 005965 363 WDEILDICNQYDVALSIG-DGLRPGSIYDANDTAQF 397 (667)
Q Consensus 363 FD~ileI~k~YDVtlSLG-DGLRPG~iaDA~D~AQ~ 397 (667)
..+++..++++++.|+|| |+-+|+-+.+-...+++
T Consensus 175 ~~~~~~~~~e~G~~~~i~tDaH~~~~lg~~~~~~~~ 210 (237)
T COG1387 175 NSEILRLARELGVKLAIGTDAHRPGDLGDMYFGVKI 210 (237)
T ss_pred hHHHHHHHHHhCCeEEeecCcCChhhcccchHHHHH
Confidence 457999999999999998 67777777776666543
No 271
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=23.79 E-value=91 Score=33.27 Aligned_cols=61 Identities=15% Similarity=0.290 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD 374 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YD 374 (667)
+..+.|.+-+-|+.-.+.|++.++|+- +....++-.. -.+=|+.+|++|+.|++++
T Consensus 5 e~~~~e~~~~d~~~m~~~G~n~vri~~-~~W~~lEP~e-----------------------G~ydF~~lD~~l~~a~~~G 60 (374)
T PF02449_consen 5 EQWPEEEWEEDLRLMKEAGFNTVRIGE-FSWSWLEPEE-----------------------GQYDFSWLDRVLDLAAKHG 60 (374)
T ss_dssp GGS-CCHHHHHHHHHHHHT-SEEEE-C-CEHHHH-SBT-----------------------TB---HHHHHHHHHHHCTT
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEEE-echhhccCCC-----------------------CeeecHHHHHHHHHHHhcc
Confidence 344556666777777788999999875 3444444333 3345778999999999999
Q ss_pred eeEec
Q 005965 375 VALSI 379 (667)
Q Consensus 375 VtlSL 379 (667)
+.+-|
T Consensus 61 i~viL 65 (374)
T PF02449_consen 61 IKVIL 65 (374)
T ss_dssp -EEEE
T ss_pred CeEEE
Confidence 76665
No 272
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=23.79 E-value=1.8e+02 Score=30.84 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=67.2
Q ss_pred ceeEeeccccCCCCCChHHHHHHHHHHHHhCCcE---eeecC--CCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCC
Q 005965 220 LVKVNANIGNSAVASSIEEEVYKVQWATMWGADT---VMDLS--TGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIA 294 (667)
Q Consensus 220 ~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADt---VMDLS--TGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~ 294 (667)
.|||-.=||=....+..+.-+.-+++|++.|||- ||+++ -.||.+.+++.|-+-..+--+-+|+ |+-=..
T Consensus 66 ~vkv~tVigFP~G~~~t~~K~~Ea~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~l-----KVIlEt 140 (257)
T PRK05283 66 EIRIATVTNFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLL-----KVIIET 140 (257)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceE-----EEEEec
Confidence 4777777777777778888888999999999965 56644 3468888888776544321101222 221122
Q ss_pred CCCCHHH-HHHHHHHHHhcCCCEEEEecc
Q 005965 295 ENLSWEV-FRDTLIEQAEQGVDYFTIHAG 322 (667)
Q Consensus 295 ~~lt~e~-~~d~ieeQAeqGVDfmTIHaG 322 (667)
-.||.++ +....+--++.|+||+=-=.|
T Consensus 141 ~~L~~ee~i~~a~~~a~~aGADFVKTSTG 169 (257)
T PRK05283 141 GELKDEALIRKASEIAIKAGADFIKTSTG 169 (257)
T ss_pred cccCCHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 4688885 888999999999999855444
No 273
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=23.70 E-value=75 Score=38.28 Aligned_cols=80 Identities=18% Similarity=0.176 Sum_probs=63.3
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeccc----cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHH
Q 005965 290 VDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGV----LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDE 365 (667)
Q Consensus 290 ~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv----~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ 365 (667)
.||+.--|+. -++.+++.-...|...+.||-|. .-+.+++...-+.++.++|||+| -..+.+| .+.++.
T Consensus 397 sGG~apGmNa-airavv~~a~~~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~L-----GT~R~~~-~~~~~~ 469 (762)
T cd00764 397 VGAPAAGMNA-AVRSAVRYGLAHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSEL-----GTKRTLP-KKDLET 469 (762)
T ss_pred cCCCchhHHH-HHHHHHHHHHHCCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccc-----cccCCCc-HHHHHH
Confidence 3777777776 45778877778999999999986 34556667788999999999974 4566666 589999
Q ss_pred HHHHHhHhcee
Q 005965 366 ILDICNQYDVA 376 (667)
Q Consensus 366 ileI~k~YDVt 376 (667)
+.+.+++|++-
T Consensus 470 i~~~l~~~~Id 480 (762)
T cd00764 470 IAYNFQKYGID 480 (762)
T ss_pred HHHHHHHcCCC
Confidence 99999999874
No 274
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=23.53 E-value=2.6e+02 Score=28.90 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecccc
Q 005965 298 SWEVFRDTLIEQAEQGVDYFTIHAGVL 324 (667)
Q Consensus 298 t~e~~~d~ieeQAeqGVDfmTIHaGv~ 324 (667)
+.+++.+....-.+.|||++++|.++.
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~v~nt~~ 193 (300)
T TIGR01037 167 NVTDITEIAKAAEEAGADGLTLINTLR 193 (300)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEccCC
Confidence 345666666655678999999998764
No 275
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=23.52 E-value=93 Score=33.63 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=54.7
Q ss_pred HHHHHHHHHhcCCCEEEEeccc----cccccccccCcccCccccccHHHHHHHHHcCCcCchh--hhHHHHHHHHhHhce
Q 005965 302 FRDTLIEQAEQGVDYFTIHAGV----LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY--EHWDEILDICNQYDV 375 (667)
Q Consensus 302 ~~d~ieeQAeqGVDfmTIHaGv----~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLY--e~FD~ileI~k~YDV 375 (667)
++-.++.-.+.|...+.++-|. +-+.++++...+.++.+.|||+| -..+-+|+- +.++.+++.+++|++
T Consensus 19 i~~~v~~~~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~L-----gtsR~~~~~~~~~~~~~~~~l~~~~I 93 (338)
T cd00363 19 IRGVVRSAIAEGLEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGTII-----GSARCKEFRTEEGRAKAAENLKKHGI 93 (338)
T ss_pred HHHHHHHHHHCCCEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCeec-----ccCCCCccCCHHHHHHHHHHHHHhCC
Confidence 4445555556788999999876 45667777788899999999965 445556543 468999999999987
Q ss_pred e--Eecc
Q 005965 376 A--LSIG 380 (667)
Q Consensus 376 t--lSLG 380 (667)
. +-+|
T Consensus 94 ~~Lv~IG 100 (338)
T cd00363 94 DALVVIG 100 (338)
T ss_pred CEEEEeC
Confidence 4 5555
No 276
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=23.40 E-value=3e+02 Score=30.06 Aligned_cols=78 Identities=22% Similarity=0.187 Sum_probs=51.9
Q ss_pred CChHHHHHHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCC-Cc------ccchhhhHHHHhcCCCCCCCHHHHHHHH
Q 005965 234 SSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAV-PV------GTVPIYQALEKVDGIAENLSWEVFRDTL 306 (667)
Q Consensus 234 ~~ieeEveKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspv-PV------GTVPIYqAl~k~~g~~~~lt~e~~~d~i 306 (667)
.|++.=.+=++.|.++|||+|= +=|- ..+.+ +.++.+- +. ...++|+-+++ ..|++|.+....
T Consensus 13 Gdl~~A~~lI~~A~~aGadaVK-fQt~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~e~~~~L~ 82 (329)
T TIGR03569 13 GSLELAKKLVDAAAEAGADAVK-FQTF-KAEDL---VSKNAPKAEYQKINTGAEESQLEMLKK-----LELSEEDHRELK 82 (329)
T ss_pred CcHHHHHHHHHHHHHhCCCEEE-eeeC-CHHHh---hCcccccccccccCCcCCCcHHHHHHH-----hCCCHHHHHHHH
Confidence 3677667778899999999985 3332 22211 2222211 00 23578998877 359999999888
Q ss_pred HHHHhcCCCEEEEec
Q 005965 307 IEQAEQGVDYFTIHA 321 (667)
Q Consensus 307 eeQAeqGVDfmTIHa 321 (667)
+..-+.|++|||==.
T Consensus 83 ~~~~~~Gi~~~stpf 97 (329)
T TIGR03569 83 EYCESKGIEFLSTPF 97 (329)
T ss_pred HHHHHhCCcEEEEeC
Confidence 888899999998543
No 277
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=23.39 E-value=87 Score=33.72 Aligned_cols=75 Identities=20% Similarity=0.141 Sum_probs=47.2
Q ss_pred HHHHHHhCCcEee-----------ecC--C-------CCChH-------HHHHHHHhcCCCCccc-chhhhHHHHhcCCC
Q 005965 243 VQWATMWGADTVM-----------DLS--T-------GRHIH-------ETREWILRNSAVPVGT-VPIYQALEKVDGIA 294 (667)
Q Consensus 243 l~~A~~~GADtVM-----------DLS--T-------Ggdi~-------~~R~~Il~nspvPVGT-VPIYqAl~k~~g~~ 294 (667)
++.|.++|.|-|- -|| | ||+|. ++-+.|-+..+.|||- +-.++- ..
T Consensus 148 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~------~~ 221 (337)
T PRK13523 148 AVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDY------HP 221 (337)
T ss_pred HHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc------CC
Confidence 4567889999984 123 2 56654 2333343444556551 222111 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccc
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGV 323 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv 323 (667)
..++.++..+.+..-.+.||||+.||.|.
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~g~ 250 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSSGA 250 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 24788999988888888999999999994
No 278
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=23.32 E-value=2.1e+02 Score=30.20 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEecc
Q 005965 294 AENLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (667)
Q Consensus 294 ~~~lt~e~~~d~ieeQAeqGVDfmTIHaG 322 (667)
-.+|+.|++.+.|.+-.+.|+..+++.=|
T Consensus 34 ~~~l~~e~~~~ii~~~~~~g~~~v~~~GG 62 (358)
T TIGR02109 34 KAELTTEEWTDVLTQAAELGVLQLHFSGG 62 (358)
T ss_pred cCCCCHHHHHHHHHHHHhcCCcEEEEeCc
Confidence 36799999999998888889988888654
No 279
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=23.18 E-value=2.4e+02 Score=30.10 Aligned_cols=90 Identities=20% Similarity=0.182 Sum_probs=59.2
Q ss_pred hceeEeccCCCCCCCcc-CCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCc--hHHHHHHHHHhcCCCC----
Q 005965 373 YDVALSIGDGLRPGSIY-DANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHK--IPENMQKQLEWCNEAP---- 445 (667)
Q Consensus 373 YDVtlSLGDGLRPG~ia-DA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~--I~~Nv~lqk~lC~~AP---- 445 (667)
-+|.||+|-.-= +.+. ...++.+|..-. .++.++-.=-||..=||||+ +-++ +.-.++.-|.|-...|
T Consensus 68 ~kViiS~GG~~g-~~~~~~~~~~~~~~~a~--~~~i~~y~~dgiDfDiE~~~--~~d~~~~~~~~~al~~Lq~~~p~l~v 142 (294)
T cd06543 68 GDVIVSFGGASG-TPLATSCTSADQLAAAY--QKVIDAYGLTHLDFDIEGGA--LTDTAAIDRRAQALALLQKEYPDLKI 142 (294)
T ss_pred CeEEEEecCCCC-CccccCcccHHHHHHHH--HHHHHHhCCCeEEEeccCCc--cccchhHHHHHHHHHHHHHHCCCcEE
Confidence 589999995321 2222 567888887655 45777777789999999997 5454 4445555555555445
Q ss_pred ccccCccccccC-CCchhHHHhH
Q 005965 446 FYTLGPLTTDIA-PGYDHITSAI 467 (667)
Q Consensus 446 fYvLGPLvTDIA-pGYDHItsAI 467 (667)
-|+|+-+++-.. .||+-+..|.
T Consensus 143 s~Tlp~~p~gl~~~g~~~l~~a~ 165 (294)
T cd06543 143 SFTLPVLPTGLTPDGLNVLEAAA 165 (294)
T ss_pred EEecCCCCCCCChhHHHHHHHHH
Confidence 367776666666 5777666664
No 280
>PRK03202 6-phosphofructokinase; Provisional
Probab=23.12 E-value=91 Score=33.62 Aligned_cols=75 Identities=20% Similarity=0.318 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCCCEEEEeccc----cccccccccCcccCccccccHHHHHHHHHcCCcCchh--hhHHHHHHHHhHhce
Q 005965 302 FRDTLIEQAEQGVDYFTIHAGV----LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY--EHWDEILDICNQYDV 375 (667)
Q Consensus 302 ~~d~ieeQAeqGVDfmTIHaGv----~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLY--e~FD~ileI~k~YDV 375 (667)
++-+++.-.+.|...+.+|-|. +-+.++++...+-++.+.||++ +...+-+|+- +.++.+++.|++|++
T Consensus 20 i~~~~~~~~~~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~-----LgtsR~~~~~~~~~~~~~~~~l~~~~I 94 (320)
T PRK03202 20 IRAVVRTAISEGLEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTI-----LGSARFPEFKDEEGRAKAIENLKKLGI 94 (320)
T ss_pred HHHHHHHHHHCCCeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcc-----cccCCCCCcCCHHHHHHHHHHHHHcCC
Confidence 3455555556799999998876 3455566778899999999997 4555666644 579999999999976
Q ss_pred e--EeccC
Q 005965 376 A--LSIGD 381 (667)
Q Consensus 376 t--lSLGD 381 (667)
. +-+|.
T Consensus 95 d~Li~IGG 102 (320)
T PRK03202 95 DALVVIGG 102 (320)
T ss_pred CEEEEeCC
Confidence 4 55653
No 281
>PLN02795 allantoinase
Probab=23.01 E-value=1.5e+02 Score=33.43 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=55.9
Q ss_pred hhHHHHHHHHhHhceeEecc--C--------CCCCC--CccC-CCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC
Q 005965 361 EHWDEILDICNQYDVALSIG--D--------GLRPG--SIYD-ANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM 427 (667)
Q Consensus 361 e~FD~ileI~k~YDVtlSLG--D--------GLRPG--~iaD-A~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl 427 (667)
..+.++++.+++||+.+.+= | .+..| .... ..-+..++|...+.++...|++.|.|=-+
T Consensus 212 ~~l~~~~~~a~~~g~~v~iH~E~~~l~~~~~~~~~~~~~~~~~~~~rP~~aE~~ai~~~~~la~~~~~~~~~-------- 283 (505)
T PLN02795 212 THIKAALPVLAKYGRPLLVHAEVVSPVESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLLEVAKDTRPGGVA-------- 283 (505)
T ss_pred HHHHHHHHHHHHhCCEEEEecCChhHhhhhhhhhcCCcChhHhcccCCHHHHHHHHHHHHHHHHHhhhcccC--------
Confidence 56778888888888776541 0 00000 0000 01134566777777777777766443222
Q ss_pred CchHHHHHHHHHhcCCCCccccCccccccCCCchhHHHh-HHHHHhhh---cccceeeecCcccccCCCChhHH
Q 005965 428 HKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSA-IGAANIGA---LGTALLCYVTPKEHLGLPNRDDV 497 (667)
Q Consensus 428 ~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApGYDHItsA-IGaA~aa~---~GadfLCYVTPaEHLgLP~~eDV 497 (667)
|..--+--||+++ -+--++.. .|..+-|=||| -||-|- .+|+
T Consensus 284 --------------------------~g~~lhi~HiSt~~~~~e~i~~ak~~G~~Vt~Ev~p-h~L~l~-~~~~ 329 (505)
T PLN02795 284 --------------------------EGAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCP-HYLAFS-AEEI 329 (505)
T ss_pred --------------------------CCCCEEEEECCChHHHHHHHHHHHHCCCcEEEEeCh-hhhccc-HHHc
Confidence 2222245677777 55444433 48888888888 778664 4443
No 282
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=22.96 E-value=69 Score=33.75 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=49.4
Q ss_pred ceeEeeccccCCCCCC--hHHHHHHHHHHHHhCCcEeeecCC---------CCChHHHHHHHH--hcCCCCcccchhhhH
Q 005965 220 LVKVNANIGNSAVASS--IEEEVYKVQWATMWGADTVMDLST---------GRHIHETREWIL--RNSAVPVGTVPIYQA 286 (667)
Q Consensus 220 ~tKVNANIGtS~~~~~--ieeEveKl~~A~~~GADtVMDLST---------Ggdi~~~R~~Il--~nspvPVGTVPIYqA 286 (667)
++++|+.+|-|-..-. .++++ |.+-| .||-..+|+.+- +...|-||-=|=|.-
T Consensus 1 ~IdlN~DlGE~~g~~~~g~D~~l--------------mp~I~saNIACG~HAGDp~~M~~tv~lA~~~gV~iGAHPsyPD 66 (242)
T PF03746_consen 1 KIDLNCDLGEGFGAWSMGDDEAL--------------MPYISSANIACGFHAGDPETMRRTVRLAKEHGVAIGAHPSYPD 66 (242)
T ss_dssp EEEEEEEESSSBTTB--S-HHHH--------------TTT-SEEEEE-SSSS--HHHHHHHHHHHHHTT-EEEEE---S-
T ss_pred CeeeeeecCCCCCCCCCCCHHHH--------------HHHhhhHHHhhcccccCHHHHHHHHHHHHHcCCEeccCCCCCC
Confidence 5789999999886433 34444 44444 468888998875 566899999999999
Q ss_pred HHHhcCCCCCCCHHHHHHHHHHHHh
Q 005965 287 LEKVDGIAENLSWEVFRDTLIEQAE 311 (667)
Q Consensus 287 l~k~~g~~~~lt~e~~~d~ieeQAe 311 (667)
++-.|....+|+.+++.+.|..|..
T Consensus 67 ~~gFGRr~m~~s~~el~~~v~yQig 91 (242)
T PF03746_consen 67 REGFGRRSMDISPEELRDSVLYQIG 91 (242)
T ss_dssp TTTTT-S-----HHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 8888888899999999999999975
No 283
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=22.95 E-value=9.8e+02 Score=25.84 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEeccc
Q 005965 296 NLSWEVFRDTLIEQAE-QGVDYFTIHAGV 323 (667)
Q Consensus 296 ~lt~e~~~d~ieeQAe-qGVDfmTIHaGv 323 (667)
-++.+++.+.++.-.+ .|+.+..||+-+
T Consensus 170 Gi~~~~~~~~~~~~~~~~~l~l~Glh~H~ 198 (417)
T TIGR01048 170 GIDVEEALEAYLYALQLPHLELVGIHCHI 198 (417)
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEEEeC
Confidence 4566776665544333 468888887733
No 284
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=22.87 E-value=1.6e+02 Score=31.34 Aligned_cols=121 Identities=11% Similarity=0.098 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccc--cccc---cccCccc-Cc---c------ccccHH-HHHHHHHcCC---cCc
Q 005965 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLL--RYIP---LTAKRMT-GI---V------SRGGSI-HAKWCLAYHK---ENF 358 (667)
Q Consensus 298 t~e~~~d~ieeQAeqGVDfmTIHaGv~~--~~l~---~~~~Rvt-gI---V------SRGGSi-~a~Wml~h~~---ENp 358 (667)
+.+++.+.+.+..++|..-|-|+.|..- +-++ ...+.+- ++ | |.--++ +++.+...+- |-|
T Consensus 141 ~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEeP 220 (355)
T cd03321 141 GAKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGLTWIEEP 220 (355)
T ss_pred hHHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCCCEEECC
Confidence 3566777777777788887878776421 1111 1111110 00 0 111111 1223332222 556
Q ss_pred hh-hhHHHHHHHHhHhceeEeccCCCCC---------CCccCC--CcHHHHHHHHHHHHHHHHHHhcCCeEE
Q 005965 359 AY-EHWDEILDICNQYDVALSIGDGLRP---------GSIYDA--NDTAQFAELLTQGELTRRAWDKDVQVM 418 (667)
Q Consensus 359 LY-e~FD~ileI~k~YDVtlSLGDGLRP---------G~iaDA--~D~AQ~~EL~~LGEL~krA~e~gVQVM 418 (667)
+- ..+|.+-++.++.++-+.+|..+.- ....|. -|...+.-+...-++++.|+++|+.+|
T Consensus 221 ~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~ 292 (355)
T cd03321 221 TLQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMS 292 (355)
T ss_pred CCCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeec
Confidence 53 4688888999999999999987731 001111 122333333444477889999999987
No 285
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=22.71 E-value=6.6e+02 Score=24.06 Aligned_cols=121 Identities=20% Similarity=0.272 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeE
Q 005965 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVAL 377 (667)
Q Consensus 298 t~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtl 377 (667)
+.+.+.+.+++-.+.|||++-+ |+.+ ..+..+.+...++.++|+.||+.|
T Consensus 19 ~~~~~~~~~~~~~~~gv~~v~l--------------r~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l 68 (212)
T PRK00043 19 SGRDLLEVVEAALEGGVTLVQL--------------REKG----------------LDTRERLELARALKELCRRYGVPL 68 (212)
T ss_pred ccccHHHHHHHHHhcCCCEEEE--------------eCCC----------------CCHHHHHHHHHHHHHHHHHhCCeE
Q ss_pred ec-----------cCCCCCCCccCCCcHHHHHHH----HHHH------HHHHHHHhcCCeEEe-----eCCCCCCCCch-
Q 005965 378 SI-----------GDGLRPGSIYDANDTAQFAEL----LTQG------ELTRRAWDKDVQVMN-----EGPGHIPMHKI- 430 (667)
Q Consensus 378 SL-----------GDGLRPG~iaDA~D~AQ~~EL----~~LG------EL~krA~e~gVQVMI-----EGPGHVPl~~I- 430 (667)
=+ .||+=-+. ...+...+..+ ..+| +-+++|.+.|+..+. .+..|--....
T Consensus 69 ~~~~~~~~a~~~gad~vh~~~--~~~~~~~~~~~~~~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~ 146 (212)
T PRK00043 69 IVNDRVDLALAVGADGVHLGQ--DDLPVADARALLGPDAIIGLSTHTLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQ 146 (212)
T ss_pred EEeChHHHHHHcCCCEEecCc--ccCCHHHHHHHcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCC
Q ss_pred -HHHHHHHHHhcCCCCccccC
Q 005965 431 -PENMQKQLEWCNEAPFYTLG 450 (667)
Q Consensus 431 -~~Nv~lqk~lC~~APfYvLG 450 (667)
-..++.-++.+.+.|.|++|
T Consensus 147 g~~~~~~~~~~~~~~~v~a~G 167 (212)
T PRK00043 147 GLEGLREIRAAVGDIPIVAIG 167 (212)
T ss_pred CHHHHHHHHHhcCCCCEEEEC
No 286
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=22.61 E-value=35 Score=26.16 Aligned_cols=10 Identities=40% Similarity=1.308 Sum_probs=6.2
Q ss_pred CcccCCCCCc
Q 005965 566 HFCSMCGPKF 575 (667)
Q Consensus 566 ~~CSMCGp~f 575 (667)
-.|+-|||.+
T Consensus 22 isC~~CGPr~ 31 (35)
T PF07503_consen 22 ISCTNCGPRY 31 (35)
T ss_dssp --BTTCC-SC
T ss_pred ccCCCCCCCE
Confidence 3599999965
No 287
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=22.56 E-value=68 Score=37.21 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCeEEee--CCCCCC
Q 005965 403 QGELTRRAWDKDVQVMNE--GPGHIP 426 (667)
Q Consensus 403 LGEL~krA~e~gVQVMIE--GPGHVP 426 (667)
..|+++-|+.+||.||.| +|||.=
T Consensus 252 v~evV~yarlRGIRVlpEfD~PgHt~ 277 (542)
T KOG2499|consen 252 VSEVVEYARLRGIRVLPEFDTPGHTG 277 (542)
T ss_pred HHHHHHHHHhccceeeecccCCcccc
Confidence 357788899999999988 799973
No 288
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=22.28 E-value=6.8e+02 Score=26.98 Aligned_cols=145 Identities=19% Similarity=0.270 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHh-------cCCCEEEEecc---ccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhH
Q 005965 294 AENLSWEVFRDTLIEQAE-------QGVDYFTIHAG---VLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHW 363 (667)
Q Consensus 294 ~~~lt~e~~~d~ieeQAe-------qGVDfmTIHaG---v~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~F 363 (667)
+..||.+++-+.++..++ .|.|.+=||+| +.-+.+.-..++-+. ..|||+ -++-.|+.|-.
T Consensus 131 p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D--~yGGsl-------enR~r~~~eii 201 (353)
T cd04735 131 PRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTD--EWGGSL-------ENRMRFPLAVV 201 (353)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCc--ccCCcH-------HHHHHHHHHHH
Q ss_pred HHHHHHHhHh---ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCc------hHHHH
Q 005965 364 DEILDICNQY---DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHK------IPENM 434 (667)
Q Consensus 364 D~ileI~k~Y---DVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~------I~~Nv 434 (667)
+.|-+-+-.+ |+.+ |+|-+.-.+..+.-..+|.+ +++++..++||...-=+.|..--.. -....
T Consensus 202 ~~vr~~vg~~~~~~~~v----~~R~s~~~~~~~g~~~ee~~---~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~ 274 (353)
T cd04735 202 KAVQEVIDKHADKDFIL----GYRFSPEEPEEPGIRMEDTL---ALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIM 274 (353)
T ss_pred HHHHHHhccccCCCceE----EEEECcccccCCCCCHHHHH---HHHHHHHHcCCCEEEeccCccccccccCCcchHHHH
Q ss_pred HHHHHhcC-CCCccccCcccc
Q 005965 435 QKQLEWCN-EAPFYTLGPLTT 454 (667)
Q Consensus 435 ~lqk~lC~-~APfYvLGPLvT 454 (667)
+.-++... +-|..+-|=+.|
T Consensus 275 ~~ik~~~~~~iPVi~~Ggi~t 295 (353)
T cd04735 275 ELVKERIAGRLPLIAVGSINT 295 (353)
T ss_pred HHHHHHhCCCCCEEEECCCCC
No 289
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=22.24 E-value=3.9e+02 Score=27.23 Aligned_cols=78 Identities=15% Similarity=-0.008 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCcEeeecCCC--CChHHHHHHHHhcCC--CCcccchhhhH--------HHHhcCCCCCCCHHHHHHHHHH
Q 005965 241 YKVQWATMWGADTVMDLSTG--RHIHETREWILRNSA--VPVGTVPIYQA--------LEKVDGIAENLSWEVFRDTLIE 308 (667)
Q Consensus 241 eKl~~A~~~GADtVMDLSTG--gdi~~~R~~Il~nsp--vPVGTVPIYqA--------l~k~~g~~~~lt~e~~~d~iee 308 (667)
+.++.++.+|||.|+ +.|. .|.+.++++ .+..+ -.+=.+.+|+- -.+..|-.+ -+.++..+.+.+
T Consensus 87 ~d~~~~~~~Ga~~vi-vgt~~~~~p~~~~~~-~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~-~~~~~~~~~~~~ 163 (254)
T TIGR00735 87 EDVDKLLRAGADKVS-INTAAVKNPELIYEL-ADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRE-STGLDAVEWAKE 163 (254)
T ss_pred HHHHHHHHcCCCEEE-EChhHhhChHHHHHH-HHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcc-cCCCCHHHHHHH
Confidence 344555667999875 4443 466666653 33321 11223333321 001112112 234455667777
Q ss_pred HHhcCCCEEEEec
Q 005965 309 QAEQGVDYFTIHA 321 (667)
Q Consensus 309 QAeqGVDfmTIHa 321 (667)
-.+.|+|++.+|.
T Consensus 164 l~~~G~~~iivt~ 176 (254)
T TIGR00735 164 VEKLGAGEILLTS 176 (254)
T ss_pred HHHcCCCEEEEeC
Confidence 7799999999996
No 290
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.21 E-value=66 Score=34.52 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEec
Q 005965 296 NLSWEVFRDTLIEQAEQGVDYFTIHA 321 (667)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDfmTIHa 321 (667)
-++.+.+.+.|..-|.-+...+-+|-
T Consensus 14 f~~~~~ik~~Id~ma~~K~N~lhlHl 39 (357)
T cd06563 14 FFPVDEVKRFIDLMALYKLNVFHWHL 39 (357)
T ss_pred CcCHHHHHHHHHHHHHhccceEEEee
Confidence 36789999999999999999999996
No 291
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=22.18 E-value=7e+02 Score=23.87 Aligned_cols=110 Identities=16% Similarity=0.173 Sum_probs=63.5
Q ss_pred CHHHHHHHHhcceEEEecCCCCCCCCceEeecCCceeEeeccccCCCCCChHHHHHHHHHHHHh--CCcEeeecCCCCCh
Q 005965 186 DPEFVRAEVARGRAIIPSNKKHLELEPMIVGRNFLVKVNANIGNSAVASSIEEEVYKVQWATMW--GADTVMDLSTGRHI 263 (667)
Q Consensus 186 ~pE~vR~~VA~Gr~VIPaN~nh~~~~p~~IG~gl~tKVNANIGtS~~~~~ieeEveKl~~A~~~--GADtVMDLSTGgdi 263 (667)
.|+.+|+.+++|.-|--.-.+|+... +-....+..|+++...+++. |.....--.-+|..
T Consensus 47 ~~~~~~~i~~~Gheig~Ht~~H~~~~------------------~~~~~~~~~ei~~~~~~l~~~~g~~~~~fr~P~G~~ 108 (191)
T TIGR02764 47 HPELVKEIVKDGHEIGSHGYRHKNYT------------------TLEDEKIKKDILRAQEIIEKLTGKKPTLFRPPSGAF 108 (191)
T ss_pred CHHHHHHHHhCCCEEEECCcCCCCcc------------------cCCHHHHHHHHHHHHHHHHHHhCCCCCEEECCCcCC
Confidence 58999999999998877777776431 11123467888887777653 54433333334443
Q ss_pred HHHHHHHHhcCCCC--cccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEecc
Q 005965 264 HETREWILRNSAVP--VGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (667)
Q Consensus 264 ~~~R~~Il~nspvP--VGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaG 322 (667)
...-..+++....- ..+|-- ++-...+.+.+.+.+.++++.| +.+.+|+|
T Consensus 109 ~~~~~~~l~~~G~~~v~w~~~~--------~D~~~~~~~~i~~~~~~~~~~g-~Iil~Hd~ 160 (191)
T TIGR02764 109 NKAVLKAAESLGYTVVHWSVDS--------RDWKNPGVESIVDRVVKNTKPG-DIILLHAS 160 (191)
T ss_pred CHHHHHHHHHcCCeEEEecCCC--------CccCCCCHHHHHHHHHhcCCCC-CEEEEeCC
Confidence 33222233332221 112111 1122345677888888888888 78888875
No 292
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=22.09 E-value=88 Score=33.74 Aligned_cols=73 Identities=26% Similarity=0.386 Sum_probs=52.7
Q ss_pred HHHHHHHH-hcCCCEEEEeccc----ccccccc-ccCcccCccccccHHHHHHHHHcCCcCchh---hhHHHHHHHHhHh
Q 005965 303 RDTLIEQA-EQGVDYFTIHAGV----LLRYIPL-TAKRMTGIVSRGGSIHAKWCLAYHKENFAY---EHWDEILDICNQY 373 (667)
Q Consensus 303 ~d~ieeQA-eqGVDfmTIHaGv----~~~~l~~-~~~RvtgIVSRGGSi~a~Wml~h~~ENpLY---e~FD~ileI~k~Y 373 (667)
+-+++.-. ..|+..+.+|-|. ..+++++ ....+-++..+||++ +...+-+|+- +.+.++++.++++
T Consensus 19 ~~~v~~a~~~~g~~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt~-----LgtsR~~~~~~~~~~~~~~~~~l~~~ 93 (324)
T TIGR02483 19 RGVVRRAIAEYGWEVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGTI-----LGSSRTNPFKYEEDGDDKIVANLKEL 93 (324)
T ss_pred HHHHHHHHHcCCceEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCcc-----ccCCCCCccccCHHHHHHHHHHHHHc
Confidence 34444443 3499999999886 4455666 677889999999996 4556666653 6899999999999
Q ss_pred cee--Eecc
Q 005965 374 DVA--LSIG 380 (667)
Q Consensus 374 DVt--lSLG 380 (667)
++. +-+|
T Consensus 94 ~Id~LivIG 102 (324)
T TIGR02483 94 GLDALIAIG 102 (324)
T ss_pred CCCEEEEEC
Confidence 874 4444
No 293
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=22.07 E-value=4.5e+02 Score=27.06 Aligned_cols=77 Identities=21% Similarity=0.204 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHhCCcEe-eecCC----------CCChHH---HHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHH
Q 005965 235 SIEEEVYKVQWATMWGADTV-MDLST----------GRHIHE---TREWILRNSAVPVGTVPIYQALEKVDGIAENLSWE 300 (667)
Q Consensus 235 ~ieeEveKl~~A~~~GADtV-MDLST----------Ggdi~~---~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e 300 (667)
++++=++=++.+.++|+|.| +.+|+ +++.+. +=+++-++..+||. .|.. .+.+
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~--------vKl~-----~~~~ 166 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVI--------VKLT-----PNVT 166 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEE--------EEeC-----CCch
Confidence 35444555667778899988 55553 233332 33334333333332 1111 1234
Q ss_pred HHHHHHHHHHhcCCCEEEEecccc
Q 005965 301 VFRDTLIEQAEQGVDYFTIHAGVL 324 (667)
Q Consensus 301 ~~~d~ieeQAeqGVDfmTIHaGv~ 324 (667)
++.+..+.-.+.|+|+++++..+.
T Consensus 167 ~~~~~a~~~~~~G~d~i~~~nt~~ 190 (296)
T cd04740 167 DIVEIARAAEEAGADGLTLINTLK 190 (296)
T ss_pred hHHHHHHHHHHcCCCEEEEECCCc
Confidence 566666656678999999986543
No 294
>PLN02537 diaminopimelate decarboxylase
Probab=21.87 E-value=1e+03 Score=25.78 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHhc--CCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH-
Q 005965 296 NLSWEVFRDTLIEQAEQ--GVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ- 372 (667)
Q Consensus 296 ~lt~e~~~d~ieeQAeq--GVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~- 372 (667)
-++++++.+.+..-.+. |+++..||+=+--... ....+.+.++.+++++.+
T Consensus 162 Gi~~~~~~~~~~~~~~~~~~l~l~Glh~H~gs~~~--------------------------~~~~~~~~~~~~~~~~~~~ 215 (410)
T PLN02537 162 GIRNEKLQWFLDAVKAHPNELKLVGAHCHLGSTIT--------------------------KVDIFRDAAVLMVNYVDEI 215 (410)
T ss_pred CCCHHHHHHHHHHHHhCCCCCcEEEEEeccCCCCC--------------------------chHHHHHHHHHHHHHHHHH
Confidence 35667766665543333 8888888875432211 112234444444444433
Q ss_pred --hce---eEeccCCCCCCCccCC----CcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCC
Q 005965 373 --YDV---ALSIGDGLRPGSIYDA----NDTAQFAELLTQGELTRRAWDKDVQVMNEGPGH 424 (667)
Q Consensus 373 --YDV---tlSLGDGLRPG~iaDA----~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGH 424 (667)
..+ .|++|-|| |..-.+. .|..++.+ .|.+...+.++|+++| ||.
T Consensus 216 ~~~g~~~~~idiGGGf-~v~y~~~~~~~~~~~~~~~-----~i~~~~~~~~~~li~E-PGR 269 (410)
T PLN02537 216 RAQGFELSYLNIGGGL-GIDYYHAGAVLPTPRDLID-----TVRELVLSRDLTLIIE-PGR 269 (410)
T ss_pred HHcCCCccEEEcCCCc-cccCCCCCCCCCCHHHHHH-----HHHHHHHhcCCEEEEc-cCh
Confidence 333 48999999 3332111 23333332 1223333568999988 664
No 295
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=21.84 E-value=7e+02 Score=26.43 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=74.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD 374 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YD 374 (667)
-.++++-|...++.+.++||+=+.+ +|-+=+..-++ .++..++++++.+.
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v-~GstGE~~~Lt----------------------------~eEr~~v~~~~~~~- 73 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILT-MGTFGECATLT----------------------------WEEKQAFVATVVET- 73 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEE-CcccccchhCC----------------------------HHHHHHHHHHHHHH-
Confidence 3589999999999999999998865 55555544432 34566677776664
Q ss_pred eeEeccCCC--CCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe-EEeeCCCCCCCCchHHHHHHHHHhcCCC---Cccc
Q 005965 375 VALSIGDGL--RPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ-VMNEGPGHIPMHKIPENMQKQLEWCNEA---PFYT 448 (667)
Q Consensus 375 VtlSLGDGL--RPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQ-VMIEGPGHVPl~~I~~Nv~lqk~lC~~A---PfYv 448 (667)
.++.+ =-|..+-+++. .-+|++.|.+.|+. |||=-|-..|+++ ++-++--+.+|... |+|+
T Consensus 74 ----~~grvpvi~Gv~~~~t~~--------ai~~a~~A~~~Gad~vlv~~P~y~~~~~-~~l~~yf~~va~a~~~lPv~i 140 (309)
T cd00952 74 ----VAGRVPVFVGATTLNTRD--------TIARTRALLDLGADGTMLGRPMWLPLDV-DTAVQFYRDVAEAVPEMAIAI 140 (309)
T ss_pred ----hCCCCCEEEEeccCCHHH--------HHHHHHHHHHhCCCEEEECCCcCCCCCH-HHHHHHHHHHHHhCCCCcEEE
Confidence 11111 02444334433 34788899999998 7888887777765 77777777777644 5544
No 296
>KOG0846 consensus Mitochondrial/chloroplast ribosomal protein L15/L10 [Translation, ribosomal structure and biogenesis]
Probab=21.78 E-value=30 Score=36.96 Aligned_cols=38 Identities=13% Similarity=0.277 Sum_probs=26.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCC
Q 005965 391 ANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMH 428 (667)
Q Consensus 391 A~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~ 428 (667)
..+.--+.-|...|-|.=.-+|+|||.+.+|++|.++.
T Consensus 112 ~~q~Idm~tL~~~g~i~p~~~eyGv~L~~~G~d~~~~~ 149 (274)
T KOG0846|consen 112 PSQPIDMKTLKDSGLINPKGREYGVQLTADGADEFKAK 149 (274)
T ss_pred ccCceeHHHHHhccCCCccccccCceeeccCCccccce
Confidence 33333444445555455667999999999999999864
No 297
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=21.74 E-value=4.8e+02 Score=23.66 Aligned_cols=72 Identities=22% Similarity=0.218 Sum_probs=40.2
Q ss_pred hHHHHHHHHhHhc-eeEecc--CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCC---CCchHHHHH
Q 005965 362 HWDEILDICNQYD-VALSIG--DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIP---MHKIPENMQ 435 (667)
Q Consensus 362 ~FD~ileI~k~YD-VtlSLG--DGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVP---l~~I~~Nv~ 435 (667)
++++.+.-. +.| |+|.+| |.++ | .+..++.+ .+-+|+++++++|.+|++=++-.-| -..++...+
T Consensus 55 ~l~~~~~~~-~pd~v~i~~G~ND~~~-~-----~~~~~~~~--~l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~ 125 (177)
T cd01822 55 RLPALLAQH-KPDLVILELGGNDGLR-G-----IPPDQTRA--NLRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAA 125 (177)
T ss_pred HHHHHHHhc-CCCEEEEeccCccccc-C-----CCHHHHHH--HHHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHH
Confidence 455554432 455 667777 2221 1 23445543 4668888999999999987752111 112444445
Q ss_pred HHHHhcC
Q 005965 436 KQLEWCN 442 (667)
Q Consensus 436 lqk~lC~ 442 (667)
..+++|.
T Consensus 126 ~~~~~a~ 132 (177)
T cd01822 126 IYPELAE 132 (177)
T ss_pred HHHHHHH
Confidence 5555663
No 298
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=21.56 E-value=74 Score=38.36 Aligned_cols=117 Identities=18% Similarity=0.150 Sum_probs=80.8
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCEEEEeccc---cc---cccccccCcccCccccccHHHHHHHHHcCCcCchh--hh
Q 005965 291 DGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGV---LL---RYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY--EH 362 (667)
Q Consensus 291 ~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv---~~---~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLY--e~ 362 (667)
||+.--|+. -++.+++.-...|...+.||-|. .. +..++...-+-+|-++||++|- ..+-+|+. +.
T Consensus 12 GGdapGmNa-aIravvr~a~~~g~~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT~LG-----TsR~~~f~~~e~ 85 (762)
T cd00764 12 GGDAQGMNA-AVRAVVRMGIYVGAKVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGTIIG-----SARCKEFREREG 85 (762)
T ss_pred CCCchhHhH-HHHHHHHHHHHCCCEEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCCccc-----CCCCCcccCHHH
Confidence 555555554 34566666667899999999876 22 3445566788999999999764 45666653 47
Q ss_pred HHHHHHHHhHhcee--Eec-cCCCCCCCccCCCcHHH---------HHHHHHHHHHHHHHHhcCCeEEeeC
Q 005965 363 WDEILDICNQYDVA--LSI-GDGLRPGSIYDANDTAQ---------FAELLTQGELTRRAWDKDVQVMNEG 421 (667)
Q Consensus 363 FD~ileI~k~YDVt--lSL-GDGLRPG~iaDA~D~AQ---------~~EL~~LGEL~krA~e~gVQVMIEG 421 (667)
+.++++.+++|++. +-+ || |+.+.|+ ++||...|+|++.+.+.+-.+-|=|
T Consensus 86 ~~~a~~~L~~~~Id~LvvIGGd--------gSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVG 148 (762)
T cd00764 86 RLQAAYNLIQRGITNLCVIGGD--------GSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVG 148 (762)
T ss_pred HHHHHHHHHHcCCCEEEEeCCc--------hHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEE
Confidence 88999999999874 333 44 3444443 4788999999999988865544433
No 299
>PRK06846 putative deaminase; Validated
Probab=21.53 E-value=6.3e+02 Score=27.32 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=26.1
Q ss_pred hhHHHHHHHHhHhceeEec----cCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeC
Q 005965 361 EHWDEILDICNQYDVALSI----GDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEG 421 (667)
Q Consensus 361 e~FD~ileI~k~YDVtlSL----GDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEG 421 (667)
+.++++++.+++.+++++- |.|+=| ++..+++||.|-+=-
T Consensus 267 ~e~~~li~~la~~g~~v~~~~~~~~g~~p---------------------~~~l~~~Gv~v~lGt 310 (410)
T PRK06846 267 EEVEELAERLAAQGISITSTVPIGRLHMP---------------------IPLLHDKGVKVSLGT 310 (410)
T ss_pred HHHHHHHHHHHHcCCeEEEeCCCCCCCCC---------------------HHHHHhCCCeEEEec
Confidence 5667777888999877752 443311 566677888777633
No 300
>PRK04123 ribulokinase; Provisional
Probab=21.53 E-value=4.5e+02 Score=29.61 Aligned_cols=123 Identities=20% Similarity=0.205 Sum_probs=65.9
Q ss_pred CccccccHHHHHHHHHcC-Cc-------CchhhhHHHHHHHHhHhc------eeEeccCCCCC--------CCc---cCC
Q 005965 337 GIVSRGGSIHAKWCLAYH-KE-------NFAYEHWDEILDICNQYD------VALSIGDGLRP--------GSI---YDA 391 (667)
Q Consensus 337 gIVSRGGSi~a~Wml~h~-~E-------NpLYe~FD~ileI~k~YD------VtlSLGDGLRP--------G~i---aDA 391 (667)
|.++-||+. ..|+..+- .+ ..-..-|++|-+.+++.. +.+..=+|.|+ |++ ...
T Consensus 329 ~~~~~~G~~-l~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~g~~gl~f~P~l~Ger~P~~~~~arg~~~Gl~~~ 407 (548)
T PRK04123 329 AGQSAVGDI-FAWFARLLVPPEYKDEAEARGKQLLELLTEAAAKQPPGEHGLVALDWFNGRRTPLADQRLKGVITGLTLG 407 (548)
T ss_pred ccccchHHH-HHHHHHhcchHhHHHHHHhcCCcHHHHHHHHHHhcCCCCCceEEcccccCCCCCCCCCCCceEEECCCCC
Confidence 445666655 57988653 11 110123555556665443 33444456554 222 123
Q ss_pred CcHHHHHH------HHHHHHHHHHHHhcCC---eEEeeCCC--CCCC-CchHHHHHHHHHhcCCCCccccCccccccCCC
Q 005965 392 NDTAQFAE------LLTQGELTRRAWDKDV---QVMNEGPG--HIPM-HKIPENMQKQLEWCNEAPFYTLGPLTTDIAPG 459 (667)
Q Consensus 392 ~D~AQ~~E------L~~LGEL~krA~e~gV---QVMIEGPG--HVPl-~~I~~Nv~lqk~lC~~APfYvLGPLvTDIApG 459 (667)
++++++.- ...+-+..+.-.+.|+ .+.+=|-| +-++ .||.++| -+.|.++..+-
T Consensus 408 ~~~~~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv-------~g~pV~~~~~~------- 473 (548)
T PRK04123 408 TDAPDIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADV-------LNRPIQVVASD------- 473 (548)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHh-------cCCceEecCcc-------
Confidence 45555431 1123334444444564 46666766 5553 6777775 35787766531
Q ss_pred chhHHHhHHHHHhhhccc
Q 005965 460 YDHITSAIGAANIGALGT 477 (667)
Q Consensus 460 YDHItsAIGaA~aa~~Ga 477 (667)
=++|+|+|+.|+.|+
T Consensus 474 ---e~~alGaA~lA~~~~ 488 (548)
T PRK04123 474 ---QCPALGAAIFAAVAA 488 (548)
T ss_pred ---ccchHHHHHHHHHHh
Confidence 367999999998874
No 301
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=21.53 E-value=8.5e+02 Score=24.58 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=50.1
Q ss_pred hhHHHHHHHHhHh-ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCC
Q 005965 361 EHWDEILDICNQY-DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPM 427 (667)
Q Consensus 361 e~FD~ileI~k~Y-DVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl 427 (667)
+.++++.+.+++| .+.+|+--++ ++...+......-..+..+-...+.|.+.|+..++=-||+.+-
T Consensus 45 ~~~~~l~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~ 111 (279)
T cd00019 45 ERAEKFKAIAEEGPSICLSVHAPY-LINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLG 111 (279)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcCc-eeccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 6799999999999 8888764332 2334444434456668888899999999999999988998764
No 302
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=21.45 E-value=1.6e+02 Score=27.53 Aligned_cols=58 Identities=24% Similarity=0.180 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHhH-hceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 005965 360 YEHWDEILDICNQ-YDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (667)
Q Consensus 360 Ye~FD~ileI~k~-YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (667)
-+.+++|.+.+++ |++.+=+=|.|.-=.-.|.++..+. -..+..|.+.|.++|+-|++
T Consensus 126 ~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~--~~~~~~l~~la~~~~~~vi~ 184 (193)
T PF13481_consen 126 DEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNSAV--AQLMQELKRLAKEYGVAVIL 184 (193)
T ss_dssp HHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HHHH--HHHHHHHHHHHHHH--EEEE
T ss_pred hHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHHHH--HHHHHHHHHHHHHcCCEEEE
Confidence 3557889999998 7776655565544444477887776 45567888899999999886
No 303
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=21.44 E-value=1e+03 Score=25.37 Aligned_cols=31 Identities=23% Similarity=0.038 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCEEEEecccccc
Q 005965 296 NLSWEVFRDTLIEQAEQGVDYFTIHAGVLLR 326 (667)
Q Consensus 296 ~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~ 326 (667)
-++.|++++.+++-.+.|+.-+.+=.|...+
T Consensus 34 ~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~ 64 (322)
T TIGR03550 34 LLSPEEVLEILRKGAAAGCTEALFTFGEKPE 64 (322)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCcc
Confidence 6999999999999999999887666666443
No 304
>TIGR01224 hutI imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation.
Probab=21.41 E-value=5.5e+02 Score=26.93 Aligned_cols=107 Identities=23% Similarity=0.191 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccc--cccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhH
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLL--RYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQ 372 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~--~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~ 372 (667)
..++.+.|.+.++.-.+-|+.+ ++||+=+. ..++... + .|.++- -+.-|+ =|+.++.+++
T Consensus 192 ~~~~~~~~~~~~~~A~~~g~~v-~~H~~e~~~~~~~~~~~-~-~g~~~~---~H~~~~------------~~~~l~~la~ 253 (377)
T TIGR01224 192 GVFSVEQSRRILQAAQEAGLPV-KLHAEELSNLGGAELAA-K-LGAVSA---DHLEHA------------SDAGIKALAE 253 (377)
T ss_pred CCcCHHHHHHHHHHHHHCCCCE-EEEecCCCCCCHHHHHH-H-cCCCcc---HHHhcC------------CHHHHHHHHh
Confidence 3566788888888888889865 89996321 1222111 1 122210 022221 1578999999
Q ss_pred hceeEeccCC--CCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeC---CCCCCCCchHHHH
Q 005965 373 YDVALSIGDG--LRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEG---PGHIPMHKIPENM 434 (667)
Q Consensus 373 YDVtlSLGDG--LRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEG---PGHVPl~~I~~Nv 434 (667)
+++.+++=-. +.-| +.. .=+++.+++||.|.+=- ||.-|...+...+
T Consensus 254 ~g~~~~~~P~~~~~l~---~~~------------~p~~~l~~~Gv~v~lgTD~~~~~~~~~~~~~~~ 305 (377)
T TIGR01224 254 AGTVAVLLPGTTFYLR---ETY------------PPARQLIDYGVPVALATDLNPGSSPTLSMQLIM 305 (377)
T ss_pred cCCEEEECchHHHhcC---CcC------------ccHHHHHHCCCCEEEECCCCCCCChhHHHHHHH
Confidence 9999874211 0000 000 01456678999998743 4444544444333
No 305
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=21.23 E-value=3.3e+02 Score=31.14 Aligned_cols=178 Identities=14% Similarity=0.140 Sum_probs=99.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY- 373 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~Y- 373 (667)
..|+.|++.+.++.-.+.|+.=+.|..|......+ .+++-++++.++++
T Consensus 113 ~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~------------------------------~eyi~e~i~~I~~~~ 162 (469)
T PRK09613 113 KKLTQEEIREEVKALEDMGHKRLALVAGEDPPNCD------------------------------IEYILESIKTIYSTK 162 (469)
T ss_pred eECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCC------------------------------HHHHHHHHHHHHHhc
Confidence 35899999999999999999999988885533111 33444444445553
Q ss_pred -------ceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeE----------------EeeCCCCCCCCch
Q 005965 374 -------DVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQV----------------MNEGPGHIPMHKI 430 (667)
Q Consensus 374 -------DVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQV----------------MIEGPGHVPl~~I 430 (667)
.|++++|. .+..|+.+|...| |.. --.||.|-+-..+
T Consensus 163 ~~~g~i~~v~inig~----------lt~eey~~LkeaG----------v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl 222 (469)
T PRK09613 163 HGNGEIRRVNVNIAP----------TTVENYKKLKEAG----------IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRL 222 (469)
T ss_pred cccCcceeeEEEeec----------CCHHHHHHHHHcC----------CCEEEeccccCCHHHHHhcCCCCCCCCHHHHH
Confidence 47888773 6777887775544 322 1246667665555
Q ss_pred HHHHHHHH----HhcCCCCccccCccccccCCCchhHHHhHHHH-Hhhhcc--cceee--ecCcccccC------CCChh
Q 005965 431 PENMQKQL----EWCNEAPFYTLGPLTTDIAPGYDHITSAIGAA-NIGALG--TALLC--YVTPKEHLG------LPNRD 495 (667)
Q Consensus 431 ~~Nv~lqk----~lC~~APfYvLGPLvTDIApGYDHItsAIGaA-~aa~~G--adfLC--YVTPaEHLg------LP~~e 495 (667)
++-=..++ .+|-|+ ++=||.- =+|.+..+.=+. +-..+| .+.+= -.-|++.-. .-+.+
T Consensus 223 ~t~~rA~~aGi~~Vg~G~-L~GLge~------~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~ 295 (469)
T PRK09613 223 TAMDRAMEAGIDDVGIGV-LFGLYDY------KFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDE 295 (469)
T ss_pred HHHHHHHHcCCCeeCeEE-EEcCCCC------HHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHH
Confidence 53322222 144444 1222221 124443321110 111223 22110 123333321 23667
Q ss_pred HHHHHHHHHHHHHHHhhhh-cCCcchhhHHHHHHH
Q 005965 496 DVKAGVIAYKIAAHAADLA-KGHPLAQTWDDALSK 529 (667)
Q Consensus 496 DVreGVIA~kIAAHaaDla-Kg~p~A~~rD~~mS~ 529 (667)
+...=|-++||+---+.|. -++..+.-||..|.-
T Consensus 296 e~lriiA~~RL~~P~~~I~lStRE~~~~r~~~~~~ 330 (469)
T PRK09613 296 DFKKIVAILRLAVPYTGMILSTRESAELRREVLEL 330 (469)
T ss_pred HHHHHHHHHHHHCCCCCceeecCCCHHHHHHHHhh
Confidence 8889999999998866653 356677788876543
No 306
>PF06368 Met_asp_mut_E: Methylaspartate mutase E chain (MutE); InterPro: IPR006396 Glutamate mutase (methylaspartate mutase) catalyses the reversible interconversion of L-glutamate and L-threo-3-methylaspartate, the first step in the pathway of glutamate fermentation []. Catalysis is initiated using the cobalamin cofactor. The E subunit is the catalytic subunit (MutE) []. ; GO: 0016866 intramolecular transferase activity, 0031419 cobalamin binding, 0019670 anaerobic glutamate catabolic process; PDB: 1CB7_D 1I9C_B 1CCW_D.
Probab=21.17 E-value=1.3e+02 Score=34.47 Aligned_cols=179 Identities=24% Similarity=0.329 Sum_probs=89.9
Q ss_pred HHHHcCCcCch------hhhHHHHHHHHhHhceeEe---cc---CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCe
Q 005965 349 WCLAYHKENFA------YEHWDEILDICNQYDVALS---IG---DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQ 416 (667)
Q Consensus 349 Wml~h~~ENpL------Ye~FD~ileI~k~YDVtlS---LG---DGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQ 416 (667)
||+=..|.=|| +.+=|+||-...+..|.+- +| -.|=|=||.=| -|+-| .--|.++||.
T Consensus 136 YnlPY~k~vpLe~si~~Wqy~drl~g~y~e~Gv~inrE~FGpLtgtLvPPsisia---v~ilE-------~Lla~eqGVk 205 (441)
T PF06368_consen 136 YNLPYSKNVPLEKSIRDWQYVDRLCGYYEENGVEINREPFGPLTGTLVPPSISIA---VSILE-------ALLAAEQGVK 205 (441)
T ss_dssp TTTTT-SS--HHHHHHHHHHHHHHHHHHHHTT---EEE--TTTTSSS--HHHHHH---HHHHH-------HHHHHHTT--
T ss_pred eccccCCCCCHHHHHHHHHHHHHHHHHHHhcCCccccccCCCCCcCccCcHHHHH---HHHHH-------HHHHHHcCCe
Confidence 55555554444 3445666666677777663 33 23444444322 23333 2357889998
Q ss_pred EEeeC---CCCCCCCchHHHHHHHHHhcCC-CC------------cc-ccCccccccCCCchhHHHhHHHHHhhhcccce
Q 005965 417 VMNEG---PGHIPMHKIPENMQKQLEWCNE-AP------------FY-TLGPLTTDIAPGYDHITSAIGAANIGALGTAL 479 (667)
Q Consensus 417 VMIEG---PGHVPl~~I~~Nv~lqk~lC~~-AP------------fY-vLGPLvTDIApGYDHItsAIGaA~aa~~Gadf 479 (667)
-+-=| -||+ .+.|+ -+.--++||.+ .| || -.|+.+.|-+-.|-=|. -|+++|+..||+=
T Consensus 206 siSv~Y~Q~gn~-~QDia-Ai~aLr~L~~eyL~~~g~~dv~i~tV~hqwMG~FP~d~~~A~~li~--~~a~~A~l~gA~k 281 (441)
T PF06368_consen 206 SISVGYAQQGNL-IQDIA-AIRALRELAAEYLPKYGYKDVEITTVFHQWMGGFPQDEAKAFGLIS--WGAATAALAGATK 281 (441)
T ss_dssp EEEEEEE--S-H-HHHHH-HHHHHHHHHHHHHHHTT--S-EEEEEEE---S---SSHHHHHHHHH--HHHHHHHHHT-SE
T ss_pred EEEecccccCCh-HHHHH-HHHHHHHHHHHHHHhcCCCCeEEEEEEeeecCCCCCChhhhHhHHH--HHHHHHHHhCCCE
Confidence 77666 4553 33333 34444444443 23 23 25899999888776554 5899999999999
Q ss_pred eeecCcccccCCCChhHHHHHHHHHHHHHHHhhhhcCCcc----hhhHHHHHHHHHhhcCHHHHHhccC
Q 005965 480 LCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKGHPL----AQTWDDALSKARFEFRWMDQFALSL 544 (667)
Q Consensus 480 LCYVTPaEHLgLP~~eDVreGVIA~kIAAHaaDlaKg~p~----A~~rD~~mS~AR~~~dWe~Qf~Lal 544 (667)
+=-=||.|-+|.|++|.=.+|+-++|-+ .+++++.+- +.+.+.++=++--.-=-++-|+|.=
T Consensus 282 vIvKT~~EA~gIPT~eaN~~~l~~t~~~---~~~l~~q~~~~~~~~~~E~~~i~~E~~~ild~Vlelg~ 347 (441)
T PF06368_consen 282 VIVKTPHEASGIPTKEANAAGLRATKQV---LNMLRDQRLPNSEALEEEKEIIKAEVRAILDAVLELGD 347 (441)
T ss_dssp EE---TTTTTSS--HHHHHHHHHHHHHH---HHHTTT------HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEcCHHHHcCCCCHHHHHHHHHHHHHH---HHHhccCCCCCccchhhHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999988888776654 466655332 2223333322222222456777773
No 307
>CHL00120 psaL photosystem I subunit XI; Validated
Probab=21.16 E-value=29 Score=34.12 Aligned_cols=45 Identities=38% Similarity=0.484 Sum_probs=31.5
Q ss_pred CCccccCcc-ccccCCCchhHHHhHHHHHhhhcccceeeecCccccc
Q 005965 444 APFYTLGPL-TTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHL 489 (667)
Q Consensus 444 APfYvLGPL-vTDIApGYDHItsAIGaA~aa~~GadfLCYVTPaEHL 489 (667)
-||+.|||| -||+| .---.-||||-.++...+-.+---|+.++.-
T Consensus 60 GPf~~lGPLRnt~~a-~laGllsaiglv~Ilt~~L~~Yg~~~~~~~~ 105 (143)
T CHL00120 60 GPFYKLGPLRNSDVA-LLAGFLSAIGLIIILTLCLTIYGVVSFQEED 105 (143)
T ss_pred chHHhhCCCcCchHH-HHHHHHHHHHHHHHHHHHHHHhcccccCCCC
Confidence 499999999 67775 2334567888888776666665556666544
No 308
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=21.03 E-value=4.3e+02 Score=27.43 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhcC-CCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHh-ce
Q 005965 298 SWEVFRDTLIEQAEQG-VDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQY-DV 375 (667)
Q Consensus 298 t~e~~~d~ieeQAeqG-VDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~Y-DV 375 (667)
+.|+|.+..++-.+.| +|++-|+++.-. ++.||..+.. +| +...+|++-.|+. |+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~-------------~~~gg~~~~~--------~~--~~~~eiv~~vr~~~~~ 158 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPN-------------VKHGGMAFGT--------DP--ELAYEVVKAVKEVVKV 158 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCC-------------CCCCcccccc--------CH--HHHHHHHHHHHHhcCC
Confidence 6789999888887888 999999886421 1123443221 22 3455666666655 54
Q ss_pred eEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEE
Q 005965 376 ALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVM 418 (667)
Q Consensus 376 tlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVM 418 (667)
.+++ =|+|. +. .+.++++++.++||.-+
T Consensus 159 pv~v--Kl~~~----------~~---~~~~~a~~l~~~G~d~i 186 (301)
T PRK07259 159 PVIV--KLTPN----------VT---DIVEIAKAAEEAGADGL 186 (301)
T ss_pred CEEE--EcCCC----------ch---hHHHHHHHHHHcCCCEE
Confidence 4432 13331 11 34567788889998743
No 309
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=21.00 E-value=1.6e+02 Score=31.44 Aligned_cols=114 Identities=14% Similarity=0.147 Sum_probs=73.3
Q ss_pred hHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCC---------chHH
Q 005965 362 HWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMH---------KIPE 432 (667)
Q Consensus 362 ~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~---------~I~~ 432 (667)
-+.+||+++++|+|..++ +=+|..++. .-+++++..+.|-.+.-=|=-|.++. +|..
T Consensus 78 G~~RiLdlL~~~gv~aTf---fv~g~~~e~-----------~P~~v~~i~~~GHEIg~Hg~~H~~~~~ls~~~e~~~i~~ 143 (297)
T TIGR03212 78 GFWRLLRLFTERGIPVTV---FGVAMALAR-----------NPEAVAAMKEAGWEIASHGLRWIDYQDMDEAQEREHIAE 143 (297)
T ss_pred CHHHHHHHHHHcCCCEEE---EeEHHHHHH-----------CHHHHHHHHHcCCEEeeccccCcccccCCHHHHHHHHHH
Confidence 467899999999997766 445555443 34678888899999999998888755 3455
Q ss_pred HHHHHHHhcCCCCccccCccccccCCCchhHHHhHHHHHh------hhcccceeeecCcc---cccCCCCh---hHH
Q 005965 433 NMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANI------GALGTALLCYVTPK---EHLGLPNR---DDV 497 (667)
Q Consensus 433 Nv~lqk~lC~~APfYvLGPLvTDIApGYDHItsAIGaA~a------a~~GadfLCYVTPa---EHLgLP~~---eDV 497 (667)
..+.-+++|+..|+=-+++ .++.-|-.+-.... -+.+-| +.|.++. .+|-||-- +|.
T Consensus 144 s~~~i~~~tG~~P~G~~~~-------~~s~~T~~LL~e~~Gf~Y~sd~~~dD-~Py~~~~~~~~~l~lP~~~~~nD~ 212 (297)
T TIGR03212 144 AIRLHTEVTGERPLGWYTG-------RTSPNTRRLVAEEGGFLYDADSYADD-LPYWDEVAGRPQLIVPYTLDANDM 212 (297)
T ss_pred HHHHHHHHhCCCCceEECC-------CCChhHHHHHHHhcCceEeCchhhcC-CCeEeecCCCCeEEEecccccCcH
Confidence 5566677898888511222 23333444444311 233334 5777663 37888854 663
No 310
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=20.98 E-value=81 Score=37.84 Aligned_cols=79 Identities=19% Similarity=0.136 Sum_probs=59.9
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCEEEEeccc----cccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHH
Q 005965 291 DGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGV----LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEI 366 (667)
Q Consensus 291 ~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv----~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~i 366 (667)
||..--|+. .++-+++.-...|...+.||-|. .-+..++....+-++.++||++| -..+-+| .+.+..+
T Consensus 398 GG~apGmNa-air~vv~~a~~~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~L-----gtsR~~~-~~~~~~i 470 (745)
T TIGR02478 398 GAPAGGMNA-ATRSAVRYAIARGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGSEL-----GTNRELP-GKDLGMI 470 (745)
T ss_pred CCCchhHHH-HHHHHHHHHHhCCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCccc-----ccCCCCc-hhHHHHH
Confidence 666666654 45566666667899999999987 34455566678999999999976 4556566 7789999
Q ss_pred HHHHhHhcee
Q 005965 367 LDICNQYDVA 376 (667)
Q Consensus 367 leI~k~YDVt 376 (667)
++.+++|++-
T Consensus 471 ~~~l~~~~Id 480 (745)
T TIGR02478 471 AYYFQKHKID 480 (745)
T ss_pred HHHHHHcCCC
Confidence 9999999874
No 311
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=20.97 E-value=8.8e+02 Score=24.57 Aligned_cols=108 Identities=13% Similarity=0.141 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHh---CCcEeeecCCCCChHHHHHHHHh---------cCCCCcccchhhhHHHHhcCCCC-----CCCH
Q 005965 237 EEEVYKVQWATMW---GADTVMDLSTGRHIHETREWILR---------NSAVPVGTVPIYQALEKVDGIAE-----NLSW 299 (667)
Q Consensus 237 eeEveKl~~A~~~---GADtVMDLSTGgdi~~~R~~Il~---------nspvPVGTVPIYqAl~k~~g~~~-----~lt~ 299 (667)
+++++.++...+. +..-.+|--.+-++++.++.+-+ .-|+|......|+.+.+.-+.+. -.+.
T Consensus 113 ~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~~~~~ 192 (265)
T cd03315 113 ARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQPLPADDLEGRAALARATDTPIMADESAFTP 192 (265)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHhhCCCCEEECCCCCCH
Confidence 5555554444332 34556676666677766654322 22444455555555654422221 2244
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhceeEec
Q 005965 300 EVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYDVALSI 379 (667)
Q Consensus 300 e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YDVtlSL 379 (667)
+++.+.|+ ..++|++.+-.. |+-|| +.+-++.++|+++++.+.+
T Consensus 193 ~~~~~~i~---~~~~d~v~~k~~-----------~~GGi----------------------~~~~~~~~~A~~~gi~~~~ 236 (265)
T cd03315 193 HDAFRELA---LGAADAVNIKTA-----------KTGGL----------------------TKAQRVLAVAEALGLPVMV 236 (265)
T ss_pred HHHHHHHH---hCCCCEEEEecc-----------cccCH----------------------HHHHHHHHHHHHcCCcEEe
Confidence 55555444 344777655432 22222 5566777777777777776
Q ss_pred c
Q 005965 380 G 380 (667)
Q Consensus 380 G 380 (667)
|
T Consensus 237 ~ 237 (265)
T cd03315 237 G 237 (265)
T ss_pred c
Confidence 6
No 312
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.93 E-value=4.5e+02 Score=26.40 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD 374 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YD 374 (667)
.++++++.++.+. +.|.|++=+..+-. ..++ ..-+..-+.+++|.+.+++|+
T Consensus 19 ~~~~~~e~~~~~~---~~G~~~iEl~~~~~-------~~~~------------------~~~~~~~~~~~~l~~~l~~~g 70 (283)
T PRK13209 19 AGECWLEKLAIAK---TAGFDFVEMSVDES-------DERL------------------ARLDWSREQRLALVNALVETG 70 (283)
T ss_pred CCCCHHHHHHHHH---HcCCCeEEEecCcc-------ccch------------------hccCCCHHHHHHHHHHHHHcC
Confidence 4678887777665 67777777642200 0000 001122457899999999999
Q ss_pred eeEecc--CCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCC
Q 005965 375 VALSIG--DGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPG 423 (667)
Q Consensus 375 VtlSLG--DGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPG 423 (667)
+.++-. .+-.+-.....+++..=+.+..+-+..+.|.+.|+.+++=+++
T Consensus 71 l~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~ 121 (283)
T PRK13209 71 FRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAGY 121 (283)
T ss_pred CceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCc
Confidence 998632 1111112222333333334566778899999999999975433
No 313
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=20.89 E-value=42 Score=23.43 Aligned_cols=10 Identities=50% Similarity=1.165 Sum_probs=8.1
Q ss_pred CCCcccCCCC
Q 005965 564 VAHFCSMCGP 573 (667)
Q Consensus 564 ~~~~CSMCGp 573 (667)
++.||+.||-
T Consensus 12 ~~~fC~~CG~ 21 (23)
T PF13240_consen 12 DAKFCPNCGT 21 (23)
T ss_pred cCcchhhhCC
Confidence 4689999994
No 314
>TIGR03612 RutA pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase.
Probab=20.73 E-value=69 Score=34.27 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHhc-CCCEEEEeccccccccccccCcccCccc
Q 005965 298 SWEVFRDTLIEQAEQ-GVDYFTIHAGVLLRYIPLTAKRMTGIVS 340 (667)
Q Consensus 298 t~e~~~d~ieeQAeq-GVDfmTIHaGv~~~~l~~~~~RvtgIVS 340 (667)
|+|++.+.|+++.+. |||-|.++..-.++.+++....|++.|.
T Consensus 307 tPe~Vae~l~~~~~~~G~d~f~l~~~~~~~~~~~f~~~VlP~l~ 350 (355)
T TIGR03612 307 SYETVARMLDEVAEVPGTGGVLLTFDDFLEGVEDFGTRIQPLMT 350 (355)
T ss_pred CHHHHHHHHHHHHhccCCCeeEEcCCCCcchHHHHHHhcCHHHh
Confidence 789999999999997 9999999988777777776666666553
No 315
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=20.61 E-value=1e+02 Score=33.20 Aligned_cols=84 Identities=18% Similarity=0.294 Sum_probs=59.5
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCEEEEeccc----cccccccccCcccCccccccHHHHHHHHHcCCcCchh--hhHH
Q 005965 291 DGIAENLSWEVFRDTLIEQAEQGVDYFTIHAGV----LLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAY--EHWD 364 (667)
Q Consensus 291 ~g~~~~lt~e~~~d~ieeQAeqGVDfmTIHaGv----~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLY--e~FD 364 (667)
||+.--|+. .++.+++.-...|+..+-+|-|. +-+.++++...+.++.++||++|- ..+-+++. +.+.
T Consensus 9 GG~apGmNa-~i~~vv~~a~~~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~Lg-----tsR~~~~~~~~~~~ 82 (317)
T cd00763 9 GGDAPGMNA-AIRGVVRSAIAEGLEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGTFLG-----SARFPEFKDEEGQA 82 (317)
T ss_pred CCCcHHHHH-HHHHHHHHHHHCCCEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCeeec-----cCCCCccCCHHHHH
Confidence 333333332 34566666667899999999886 356666777889999999999763 44545544 6889
Q ss_pred HHHHHHhHhcee--Eecc
Q 005965 365 EILDICNQYDVA--LSIG 380 (667)
Q Consensus 365 ~ileI~k~YDVt--lSLG 380 (667)
.+++.++++++. +-+|
T Consensus 83 ~~~~~l~~~~Id~Li~IG 100 (317)
T cd00763 83 KAIEQLKKHGIDALVVIG 100 (317)
T ss_pred HHHHHHHHcCCCEEEEEC
Confidence 999999999864 4444
No 316
>PRK07213 chlorohydrolase; Provisional
Probab=20.50 E-value=1.1e+03 Score=25.34 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhH----HHHHHHH
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHW----DEILDIC 370 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~F----D~ileI~ 370 (667)
..++.+.|...++.-.+.|+ .+++|++=+.........+. |.+ =..|+...+-..-+..|- |+-++.+
T Consensus 174 ~~~s~~~l~~~~~~A~~~g~-~v~~H~~e~~~e~~~~~~~~------G~~-~v~~~~~~G~~~~~i~H~~~~~~~~i~~l 245 (375)
T PRK07213 174 NEYSDEELKFICKECKREKK-IFSIHAAEHKGSVEYSLEKY------GMT-EIERLINLGFKPDFIVHATHPSNDDLELL 245 (375)
T ss_pred ccCCHHHHHHHHHHHHHcCC-EEEEeeCCchhHHHHHHHHc------CCC-hHHHHHhcCCCCCEEEECCCCCHHHHHHH
Confidence 45778887777777777787 55899975544333211111 111 134555443321122331 3458888
Q ss_pred hHhceeEe--------ccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEee
Q 005965 371 NQYDVALS--------IGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNE 420 (667)
Q Consensus 371 k~YDVtlS--------LGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIE 420 (667)
++.+++++ ||.|+-| ++++.++||.|-+=
T Consensus 246 a~~g~~v~~~P~sn~~l~~g~~~---------------------v~~l~~~Gv~v~lG 282 (375)
T PRK07213 246 KENNIPVVVCPRANASFNVGLPP---------------------LNEMLEKGILLGIG 282 (375)
T ss_pred HHcCCcEEECCcchhhhccCCcc---------------------HHHHHHCCCEEEEe
Confidence 99996543 3444322 46778899988874
No 317
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=20.40 E-value=3.4e+02 Score=27.83 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=46.4
Q ss_pred CCceeEeeccccCCCCCChHHHHHHHHHHHHhCCcEeeecCCCC-----ChHHHHHHHHhcCCCCcccchhhhHHHHhcC
Q 005965 218 NFLVKVNANIGNSAVASSIEEEVYKVQWATMWGADTVMDLSTGR-----HIHETREWILRNSAVPVGTVPIYQALEKVDG 292 (667)
Q Consensus 218 gl~tKVNANIGtS~~~~~ieeEveKl~~A~~~GADtVMDLSTGg-----di~~~R~~Il~nspvPVGTVPIYqAl~k~~g 292 (667)
-+.+|+..+. . ++-++=++.+.++|+|.| ..+++. |++.+++-- . ++||. .+|
T Consensus 141 pVsvKir~g~--~------~~~~~la~~l~~aG~d~i-hv~~~~~g~~ad~~~I~~i~---~-----~ipVI-----gnG 198 (233)
T cd02911 141 PVSVKIRAGV--D------VDDEELARLIEKAGADII-HVDAMDPGNHADLKKIRDIS---T-----ELFII-----GNN 198 (233)
T ss_pred CEEEEEcCCc--C------cCHHHHHHHHHHhCCCEE-EECcCCCCCCCcHHHHHHhc---C-----CCEEE-----EEC
Confidence 4778888763 1 222334567789999965 777764 344444421 1 34543 246
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCEEEEecc
Q 005965 293 IAENLSWEVFRDTLIEQAEQGVDYFTIHAG 322 (667)
Q Consensus 293 ~~~~lt~e~~~d~ieeQAeqGVDfmTIHaG 322 (667)
.+. |+++..+.++ .|+|.+-|=-|
T Consensus 199 gI~--s~eda~~~l~----~GaD~VmiGR~ 222 (233)
T cd02911 199 SVT--TIESAKEMFS----YGADMVSVARA 222 (233)
T ss_pred CcC--CHHHHHHHHH----cCCCEEEEcCC
Confidence 554 6788877775 48998876444
No 318
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=20.21 E-value=8.7e+02 Score=24.74 Aligned_cols=122 Identities=20% Similarity=0.124 Sum_probs=75.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCccccccHHHHHHHHHcCCcCchhhhHHHHHHHHhHhc
Q 005965 295 ENLSWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDEILDICNQYD 374 (667)
Q Consensus 295 ~~lt~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSRGGSi~a~Wml~h~~ENpLYe~FD~ileI~k~YD 374 (667)
.++=.|.|++.+.++...++++..+ |. +.+.. ..+. ||-+- + +-++-.+++.++++|
T Consensus 10 ~N~GDe~~l~~~l~~l~~~~~~~v~-s~-~p~~~---~~~~-~v~~~------------~-----r~~~~~~~~~l~~~D 66 (298)
T TIGR03609 10 GNLGDEALLAALLRELPPGVEPTVL-SN-DPAET---AKLY-GVEAV------------N-----RRSLLAVLRALRRAD 66 (298)
T ss_pred CCcchHHHHHHHHHhcCCCCeEEEe-cC-ChHHH---Hhhc-CceEE------------c-----cCCHHHHHHHHHHCC
Confidence 4556689999999999888875544 21 11111 1111 33211 0 124557889999999
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEeeCCCCCCCCchHHHHHHHHHhcCCCCcc
Q 005965 375 VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMNEGPGHIPMHKIPENMQKQLEWCNEAPFY 447 (667)
Q Consensus 375 VtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMIEGPGHVPl~~I~~Nv~lqk~lC~~APfY 447 (667)
+.++-|.|+ +.|.+. +.-+...-.+...|+..|..|++=|.|-=|++.= .+-.+-+++...+.++
T Consensus 67 ~vI~gGG~l----~~d~~~---~~~~~~~~~~~~~a~~~~k~~~~~g~giGP~~~~-~~r~~~~~~l~~~~~i 131 (298)
T TIGR03609 67 VVIWGGGSL----LQDVTS---FRSLLYYLGLMRLARLFGKPVILWGQGIGPLRRR-LSRWLVRRVLRGCRAI 131 (298)
T ss_pred EEEECCccc----ccCCcc---cccHHHHHHHHHHHHHcCCCEEEEecccCCcCCH-HHHHHHHHHHccCCEE
Confidence 999988764 445442 2223333357788888999999988888788762 3444555555666654
No 319
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=20.20 E-value=3.9e+02 Score=29.95 Aligned_cols=86 Identities=15% Similarity=0.256 Sum_probs=58.7
Q ss_pred CcccCccccccHHHHH-H----HHHcCCcCchhh------hHHHHHHHHhHhceeEeccCCCCCCCccCCCcHHHHHHHH
Q 005965 333 KRMTGIVSRGGSIHAK-W----CLAYHKENFAYE------HWDEILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELL 401 (667)
Q Consensus 333 ~RvtgIVSRGGSi~a~-W----ml~h~~ENpLYe------~FD~ileI~k~YDVtlSLGDGLRPG~iaDA~D~AQ~~EL~ 401 (667)
..-+|.|||--+.+.. | |+.|=.-|=+|. +|-++...++++|+.||-|=+ .+.|.+-.-++.-+
T Consensus 67 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDlvI~gGG~----lfqD~y~~~~~~y~- 141 (426)
T PRK10017 67 NSAAGVVGRVKKVLRRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSGYDAIIQVGGS----FFVDLYGVPQFEHA- 141 (426)
T ss_pred ccccccchhHHHHHHhhhhHHHHHhhhccccccccccchhhHHHHHHHHHhCCEEEECCCC----ccccCcccHHHHHH-
Confidence 3457999996666543 5 455545555544 466788999999999999833 34565444444321
Q ss_pred HHHHHHHHHHhcCCeEEeeCCCCCCCCc
Q 005965 402 TQGELTRRAWDKDVQVMNEGPGHIPMHK 429 (667)
Q Consensus 402 ~LGEL~krA~e~gVQVMIEGPGHVPl~~ 429 (667)
..|+..|..||+=|-|==|++.
T Consensus 142 ------l~A~l~gkpv~l~gqsiGPf~~ 163 (426)
T PRK10017 142 ------LCAFMAKKPLYMIGHSVGPFQD 163 (426)
T ss_pred ------HHHHHcCCCEEEECCcCCCcCC
Confidence 2577899999999887778875
No 320
>PLN02489 homocysteine S-methyltransferase
Probab=20.14 E-value=2.4e+02 Score=30.53 Aligned_cols=103 Identities=17% Similarity=-0.015 Sum_probs=69.9
Q ss_pred ccCCCCCChHHHHHHHHHHHHhCCcEeeecCCCCC-hHHHHHHHHhcCCCCcccchh----hhHHHHhcCCCCCCCHHHH
Q 005965 228 GNSAVASSIEEEVYKVQWATMWGADTVMDLSTGRH-IHETREWILRNSAVPVGTVPI----YQALEKVDGIAENLSWEVF 302 (667)
Q Consensus 228 GtS~~~~~ieeEveKl~~A~~~GADtVMDLSTGgd-i~~~R~~Il~nspvPVGTVPI----YqAl~k~~g~~~~lt~e~~ 302 (667)
|...+..++++=++.+.. ..++|.|.==.++-+ +..+=+++-...+.|++-.|- |+...+.--...+++.+.|
T Consensus 221 ~~l~~G~~~~~~~~~~~~--~~~~~~iGiNC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~ 298 (335)
T PLN02489 221 VNVVSGDSLLECASIADS--CKKVVAVGINCTPPRFIHGLILSIRKVTSKPIVVYPNSGETYDGEAKEWVESTGVSDEDF 298 (335)
T ss_pred CccCCCCcHHHHHHHHHh--cCCceEEEecCCCHHHHHHHHHHHHhhcCCcEEEECCCCCCCCCccCcccCCCCCCHHHH
Confidence 344455566665555532 136788875555433 555666666666888888776 5543221012356889999
Q ss_pred HHHHHHHHhcCCCEEEEecccccccccccc
Q 005965 303 RDTLIEQAEQGVDYFTIHAGVLLRYIPLTA 332 (667)
Q Consensus 303 ~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~ 332 (667)
-+.+.+-.+.||.++-==||++.++|....
T Consensus 299 ~~~~~~~~~~Ga~iIGGCCgt~P~hI~al~ 328 (335)
T PLN02489 299 VSYVNKWRDAGASLIGGCCRTTPNTIRAIS 328 (335)
T ss_pred HHHHHHHHHCCCcEEeeCCCCCHHHHHHHH
Confidence 999999999999999999999999998533
No 321
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=20.10 E-value=2.5e+02 Score=29.56 Aligned_cols=63 Identities=29% Similarity=0.353 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCcEeeecCCCCChHHHHHHHHhcCCCCcccchhhhHHHHhcCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Q 005965 241 YKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVDGIAENLSWEVFRDTLIEQAEQGVDYFTIH 320 (667)
Q Consensus 241 eKl~~A~~~GADtVMDLSTGgdi~~~R~~Il~nspvPVGTVPIYqAl~k~~g~~~~lt~e~~~d~ieeQAeqGVDfmTIH 320 (667)
+-+..|.++|||-|| |..- .++.+++.+-.... .+|+.-. || +|. +.+.+-++-|||++.+=
T Consensus 193 eea~~A~~~gaDyI~-ld~~-~~e~l~~~~~~~~~----~ipi~Ai----GG----I~~----~ni~~~a~~Gvd~Iav~ 254 (268)
T cd01572 193 EQLKEALEAGADIIM-LDNM-SPEELREAVALLKG----RVLLEAS----GG----ITL----ENIRAYAETGVDYISVG 254 (268)
T ss_pred HHHHHHHHcCCCEEE-ECCc-CHHHHHHHHHHcCC----CCcEEEE----CC----CCH----HHHHHHHHcCCCEEEEE
Confidence 345667789999998 4332 46777776532211 4554321 33 344 55667788999999764
Q ss_pred c
Q 005965 321 A 321 (667)
Q Consensus 321 a 321 (667)
+
T Consensus 255 s 255 (268)
T cd01572 255 A 255 (268)
T ss_pred e
Confidence 3
No 322
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=20.10 E-value=4.8e+02 Score=28.05 Aligned_cols=92 Identities=11% Similarity=0.127 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccccccccccccCcccCcccc--ccHHHHHHHHHcCCcCchhhhHHHHHHHHhH-hc
Q 005965 298 SWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSR--GGSIHAKWCLAYHKENFAYEHWDEILDICNQ-YD 374 (667)
Q Consensus 298 t~e~~~d~ieeQAeqGVDfmTIHaGv~~~~l~~~~~RvtgIVSR--GGSi~a~Wml~h~~ENpLYe~FD~ileI~k~-YD 374 (667)
+++.|.+..+.-.+.|+|.+-||+|- |.. .+++. ||+++-. | +...+|++-+++ -+
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gC-----P~~-----~v~~~~~Gs~L~~~---------p--~~~~eiv~avr~~v~ 133 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGC-----PSD-----RVQNGRFGACLMAE---------P--ELVADCVKAMKDAVS 133 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCC-----CHH-----HccCCCeeeHHhcC---------H--HHHHHHHHHHHHHcC
Confidence 56888888877666799999999994 221 11222 5555431 1 122333333333 24
Q ss_pred eeEeccCCCCCCCccCCCcHHHHHHHHHHHHHHHHHHhcCCeEEe
Q 005965 375 VALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWDKDVQVMN 419 (667)
Q Consensus 375 VtlSLGDGLRPG~iaDA~D~AQ~~EL~~LGEL~krA~e~gVQVMI 419 (667)
+.+|+= +|.|.-.+ + ....+-++++++.+.||+..+
T Consensus 134 ~pVsvK--iR~g~~~~--~-----t~~~~~~~~~~l~~aG~d~i~ 169 (333)
T PRK11815 134 IPVTVK--HRIGIDDQ--D-----SYEFLCDFVDTVAEAGCDTFI 169 (333)
T ss_pred CceEEE--EEeeeCCC--c-----CHHHHHHHHHHHHHhCCCEEE
Confidence 555543 36664322 1 123356788888899998764
No 323
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=20.05 E-value=3.4e+02 Score=29.10 Aligned_cols=124 Identities=12% Similarity=-0.039 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEecccc---c---cccccccCccc---C-ccccccHHH-------HHHHHHcC---CcC
Q 005965 298 SWEVFRDTLIEQAEQGVDYFTIHAGVL---L---RYIPLTAKRMT---G-IVSRGGSIH-------AKWCLAYH---KEN 357 (667)
Q Consensus 298 t~e~~~d~ieeQAeqGVDfmTIHaGv~---~---~~l~~~~~Rvt---g-IVSRGGSi~-------a~Wml~h~---~EN 357 (667)
+.+++.+.+++..++|.+.|-||.|.. . +.+......+- . .|==.+++- ++.|...+ =|-
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~l~~iEe 222 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELGFFWYED 222 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCchhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhcCCCeEeC
Confidence 788999999999999999999997632 1 12221111110 0 111112221 12222222 255
Q ss_pred chh-hhHHHHHHHHhHhceeEeccCCCC--CCCc-----cCCCcHH-----HHHHHHHHHHHHHHHHhcCCeEEeeC
Q 005965 358 FAY-EHWDEILDICNQYDVALSIGDGLR--PGSI-----YDANDTA-----QFAELLTQGELTRRAWDKDVQVMNEG 421 (667)
Q Consensus 358 pLY-e~FD~ileI~k~YDVtlSLGDGLR--PG~i-----aDA~D~A-----Q~~EL~~LGEL~krA~e~gVQVMIEG 421 (667)
|+. ..++.+-+|.++.++-+.+|..+. +... .++-|-. .+.-+-..-+++..|.++||.+|+-+
T Consensus 223 P~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 223 PLREASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred CCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 664 357888899899999999888763 1111 1122222 22233344477888999999999843
No 324
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=20.03 E-value=3.5e+02 Score=26.32 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEeccc
Q 005965 298 SWEVFRDTLIEQAEQGVDYFTIHAGV 323 (667)
Q Consensus 298 t~e~~~d~ieeQAeqGVDfmTIHaGv 323 (667)
+.++|.+..+.-.+.|+|.+=||+|-
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~ 90 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGC 90 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 57888888877777799999999994
Done!