BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005966
         (667 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/677 (64%), Positives = 534/677 (78%), Gaps = 14/677 (2%)

Query: 1   MNGPSHHTLPKTTHLVI------KLVQQYAATKSIAGTKQLHAFIIT----SGPLFTHLR 50
           M+GPS   L K+ HL+        L+Q+  + KSI  TKQ+HA  IT    S P   HL 
Sbjct: 1   MDGPSQ-ALSKSKHLLTATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLL 59

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           SSL  AY   G   + R LFDE+   S F +N +++MY  +G S+D+L +F+ ML  G  
Sbjct: 60  SSLAAAYAMFGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRR 119

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PDNYTYP VIKAC D    ++G  +H R +++GFD D FV N L+AMYMN GE++ AR+
Sbjct: 120 WPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARR 179

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VFD M E ++VSWNT+I+GYFKN   KEAL+VFDWM+  G+EPDCA+VVSVLP C YLKE
Sbjct: 180 VFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKE 239

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +E+GR +H LV    LG++I+ WN+L+DMY KCG+++EA+++F  M +RDVV+WT+M+NG
Sbjct: 240 LEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNG 299

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y LNGD R+AL L Q+MQFE V+PN +T+ S+LSAC+SLY LK GR LH W I+Q LE E
Sbjct: 300 YILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESE 359

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           VIVETALIDMYAKCN V LSF+VF++TSK++T PWNAI++GC+HNGL+RKA+ELF+QML+
Sbjct: 360 VIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLM 419

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           E V+PNDATLNSLLPAYA L DLQQA N+H YLIR GFLS +EV+T LIDIYSKCGSLES
Sbjct: 420 EAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLES 479

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           AH IF+ IP KDKDI+ WS IIAGYGMHGHGETA+SLF +MVQSGV+PNE+TFTS LHAC
Sbjct: 480 AHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHAC 539

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           SH GL+DEGL LF FMLE++Q   R DHYTC++DLLGRAGRL+EAY+LIRTM  +P HAV
Sbjct: 540 SHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAV 599

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           WGALLG+CVIH NVELGEVAAKWLFELEP N GNYVLL+ +YSAV RW+DAE+VR +M+ 
Sbjct: 600 WGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNN 659

Query: 648 KGLRKAPAHSLIEVRNI 664
            GLRK PAHSLIEVRNI
Sbjct: 660 IGLRKTPAHSLIEVRNI 676


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  909 bits (2348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/677 (64%), Positives = 533/677 (78%), Gaps = 14/677 (2%)

Query: 1   MNGPSHHTLPKTTHLVI------KLVQQYAATKSIAGTKQLHAFIIT----SGPLFTHLR 50
           M+GPS   L K+ HL+        L+Q+  + KSI  TKQ+HA  IT    S P   HL 
Sbjct: 1   MDGPSQ-ALSKSKHLLTATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHLL 59

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           SSL  AY   G   + R LFDE+   S F +N +++MY  +G S+D+L +F+ ML  G  
Sbjct: 60  SSLAAAYAMCGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRR 119

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PDNYTYP VIKAC D    ++G  +H R +++GFD D FV N L+AMYMN GE++ AR+
Sbjct: 120 WPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARR 179

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VFD M E ++VSWNT+I+GYFKN   KEAL+VFDWM+  G+EPDCA+VVSVLP C YLKE
Sbjct: 180 VFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKE 239

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +E+GR +H LV    LG++I+ WN+L+DMY KCG+++EA+++F  M +RDVV+WT+M+NG
Sbjct: 240 LEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNG 299

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y LNGD R+AL L Q+MQFE V+PN +T+ S+LSAC+SLY LK GR LH W I+Q LE E
Sbjct: 300 YILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLESE 359

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           VIVETALIDMYAKCN V LSF+VF++ SK++T PWNAI++GC+HNGL+RKA+ELF+QML+
Sbjct: 360 VIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLM 419

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           E V+PNDATLNSLLPAYA L DLQQA N+H YLIR GFLS +EV+T LIDIYSKCGSLES
Sbjct: 420 EAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLES 479

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           AH IF+ IP KDKDI+ WS IIAGYGMHGHGETA+SLF +MVQSGV+PNE+TFTS LHAC
Sbjct: 480 AHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHAC 539

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           SH GL+DEGL LF FMLE++Q   R DHYTC++DLLGRAGRL+EAY+LIRTM  +P HAV
Sbjct: 540 SHAGLVDEGLGLFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAV 599

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           WGALLG+CVIH NVELGEVAAKWLFELEP N GNYVLL+ +YSAV RW+DAE+VR +M+ 
Sbjct: 600 WGALLGSCVIHENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNN 659

Query: 648 KGLRKAPAHSLIEVRNI 664
            GLRK PAHSLIEVRNI
Sbjct: 660 IGLRKTPAHSLIEVRNI 676


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  877 bits (2267), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/676 (64%), Positives = 523/676 (77%), Gaps = 14/676 (2%)

Query: 1   MNGPSHHTL---------PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRS 51
           MNGP+  T+         PKTT     L++ Y A +S+  TKQLHA +ITSG L   +RS
Sbjct: 1   MNGPTKTTISKTTKLLLAPKTTQYQ-SLLKHYGAAQSLTSTKQLHAHLITSGLLSIDIRS 59

Query: 52  SLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN 108
            LV  Y H   V N R LFDE+ +R + LYN ++KMY   G   +++K+FL ML   +  
Sbjct: 60  VLVATYAHCGYVHNARKLFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEMLGSKDCC 119

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           PDNYTYP VIKAC++L   + G  LHG  L++ F    FV N L+AMYMN GEV+ ARKV
Sbjct: 120 PDNYTYPFVIKACSELLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKV 179

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           FDAM E SVVSWNT+I+GYFKN +A  ALVVF+ M+ SGVE D ASVVSVLPACGYLKE+
Sbjct: 180 FDAMKEKSVVSWNTMINGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKEL 239

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
           E+GR +H LV    LGK I + NALVDMY KCGS++EARLVFD M ERDVV+WTSMINGY
Sbjct: 240 EVGRRVHGLVEEKVLGKKIVS-NALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGY 298

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
            LNGD ++AL LF++MQ EG+RPNS+TI  +L AC+SL  LK GR LH W +KQ L  EV
Sbjct: 299 ILNGDAKSALSLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRLYSEV 358

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            VET+LIDMYAKCN + LSF VF RTS+KKTVPWNA+L+GCVHN LA +A+ LF++ML+E
Sbjct: 359 AVETSLIDMYAKCNCLGLSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLME 418

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            VE N AT NSLLPAY ILADLQ   NI+ YL+R GF+S ++V+T LIDIYSKCGSLESA
Sbjct: 419 GVEINAATCNSLLPAYGILADLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESA 478

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
           HKIF+ IP+  +DI VWS+IIAGYGMHGHGETAVSLFK+MVQSGV+PN+VTFTS L +CS
Sbjct: 479 HKIFNTIPVDVQDIFVWSIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQSCS 538

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           H G++D+GL LF FML++HQT    DHYTC+VDLLGRAGR+DEAYDLI+TMP  P HAVW
Sbjct: 539 HAGMVDDGLYLFKFMLKDHQTIPNDDHYTCMVDLLGRAGRMDEAYDLIKTMPFMPGHAVW 598

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
           GALLGACV+H NVELGEVAA+WLFELEP N GNYVLL+KLY+A+ RW+DAENVR  MD+ 
Sbjct: 599 GALLGACVMHENVELGEVAARWLFELEPGNTGNYVLLAKLYAALGRWEDAENVRQRMDDI 658

Query: 649 GLRKAPAHSLIEVRNI 664
           GLRKAPAHSLIE   +
Sbjct: 659 GLRKAPAHSLIEAGTV 674


>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 666

 Score =  808 bits (2087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/650 (61%), Positives = 502/650 (77%), Gaps = 4/650 (0%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAYG---HVSNVRILFDEMSERS 74
           L+ +++A++S + TK+LHA I+T G   + +L S L   Y    H S    LFD++S+  
Sbjct: 17  LLGKFSASQSHSETKRLHALILTLGIFSSSNLCSKLATTYAQCHHASYASHLFDKLSQPC 76

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
            F +N +M+MY Q G   D+L +F+ ML  G   PD +TYP+VIKAC DL+   +G+ +H
Sbjct: 77  LFSWNAMMRMYVQIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVGIH 136

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           G+    G+D DTFV N L+AMYMN GE +AA+ VFD M E +V+SWNT+I+GYF+N  A+
Sbjct: 137 GQTFKFGYDSDTFVQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAE 196

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           +A+ V+  M+  GVEPDCA+VVSVLPACG LK +E+GR +H LV       NI   NALV
Sbjct: 197 DAVNVYGRMMDVGVEPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVRNALV 256

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           DMYVKCG + EA L+   M ++DVVTWT++INGY LNGD R+AL L  +MQ EGV+PNS+
Sbjct: 257 DMYVKCGQMKEAWLLAKGMDDKDVVTWTTLINGYILNGDARSALMLCGMMQCEGVKPNSV 316

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           +I SLLSAC SL YL  G+ LHAW I+Q +E EVIVETALI+MYAKCN   LS++VF  T
Sbjct: 317 SIASLLSACGSLVYLNHGKCLHAWAIRQKIESEVIVETALINMYAKCNCGNLSYKVFMGT 376

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
           SKK+T PWNA+L+G + N LAR+A+ELF+QMLV+ V+P+ AT NSLLPAYAILADLQQAM
Sbjct: 377 SKKRTAPWNALLSGFIQNRLAREAIELFKQMLVKDVQPDHATFNSLLPAYAILADLQQAM 436

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
           NIHCYLIR GFL  +EV++ L+DIYSKCGSL  AH+IF+ I +KDKDI++WS IIA YG 
Sbjct: 437 NIHCYLIRSGFLYRLEVASILVDIYSKCGSLGYAHQIFNIISLKDKDIIIWSAIIAAYGK 496

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           HGHG+ AV LF +MVQSGV+PN VTFTS LHACSH GL++EG  LFNFML+ HQ  S  D
Sbjct: 497 HGHGKMAVKLFNQMVQSGVKPNHVTFTSVLHACSHAGLVNEGFSLFNFMLKQHQIISHVD 556

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HYTC++DLLGRAGRL++AY+LIRTMP+ P HAVWGALLGACVIH NVELGEVAA+W F+L
Sbjct: 557 HYTCMIDLLGRAGRLNDAYNLIRTMPITPNHAVWGALLGACVIHENVELGEVAARWTFKL 616

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
           EPEN GNYVLL+KLY+AV RW DAE VRD+++E GLRK PAHSLIEVR++
Sbjct: 617 EPENTGNYVLLAKLYAAVGRWGDAERVRDMVNEVGLRKLPAHSLIEVRDM 666



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 130/287 (45%), Gaps = 11/287 (3%)

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           SLL   S+       + LHA  +   +     + + L   YA+C+    +  +F + S+ 
Sbjct: 16  SLLGKFSASQSHSETKRLHALILTLGIFSSSNLCSKLATTYAQCHHASYASHLFDKLSQP 75

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVE-VVEPNDATLNSLLPAYAILADLQQAMNI 436
               WNA++   V  G    A+ LF +ML      P+  T   ++ A   L+ +   + I
Sbjct: 76  CLFSWNAMMRMYVQIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVGI 135

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H    ++G+ S   V   L+ +Y   G  E+A  +F   P++++ ++ W+ +I GY  + 
Sbjct: 136 HGQTFKFGYDSDTFVQNTLLAMYMNAGEKEAAQLVFD--PMQERTVISWNTMINGYFRNN 193

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN---HQTCSRA 553
             E AV+++  M+  GV+P+  T  S L AC     ++ G ++   + E         R 
Sbjct: 194 CAEDAVNVYGRMMDVGVEPDCATVVSVLPACGLLKNVELGREVHTLVQEKGFWGNIVVR- 252

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
                +VD+  + G++ EA+ L + M  K     W  L+   +++G+
Sbjct: 253 ---NALVDMYVKCGQMKEAWLLAKGMDDKDV-VTWTTLINGYILNGD 295


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/651 (57%), Positives = 488/651 (74%), Gaps = 6/651 (0%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSS 75
           L+  YAAT+SI+ TK LH  +IT G +  H+ S+L   Y   GH++  R LFDEM + S 
Sbjct: 21  LLNHYAATQSISKTKALHCHVITGGRVSGHILSTLSVTYALCGHIAYARKLFDEMPQSSL 80

Query: 76  FLYNTVMKMYAQNGASHDSLKMFLGMLRLG-EYNPDNYTYPIVIKACTDLAWRKLGIALH 134
             YN V++MY ++G  HD++ +F+ M+  G +  PD YTYP V KA  +L    LG+ +H
Sbjct: 81  LSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAGELKSISLGLVIH 140

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           GR+L + F MD +V N L+AMYMNFG V+ AR VFD M    V+SWNT+ISGY++N Y  
Sbjct: 141 GRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMN 200

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           +AL++FDWM+  GV+PD A++VS+LP CG+LK +EMGR +H+LV   RLG  I   NALV
Sbjct: 201 DALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEVKNALV 260

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           +MY+KCG ++EAR VF RM  RDV+TWT MINGY  +GDV NAL L +LMQFEGVRPN++
Sbjct: 261 NMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAV 320

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           TI SL+SAC     L  G+ LH W I+Q +  ++I+ET+LI MYAKC  + L F+VF+  
Sbjct: 321 TIASLVSACGDALKLNDGKCLHGWAIRQKVCSDIIIETSLISMYAKCKHIDLCFRVFSGA 380

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
           S+  T PW+AI+AGCV N L R A++LF++M  E VEPN ATLNSLLPAYA LADL+Q M
Sbjct: 381 SRNHTGPWSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTM 440

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI--KDKDIVVWSVIIAGY 492
           NIHCYL + GF+S ++ +TGL+ +YSKCG+LESAHKIF+ I    K KD+V+W  +I+GY
Sbjct: 441 NIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGY 500

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
           GMHG G  A+ +F EMV+SGV PNE+TFTSAL+ACSH GL++EGL LF+FMLE+++T +R
Sbjct: 501 GMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFSFMLEHYKTLAR 560

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
           ++HYTCIVDLLGRAGRLDEAY+LI T+P +PT  +WGALL ACV H NV+LGE+AA  LF
Sbjct: 561 SNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTIWGALLAACVTHENVQLGEMAANKLF 620

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           ELEPEN GNYVLL+ +Y+A+ RWKD E VR++M+  GLRK P HS IE+R+
Sbjct: 621 ELEPENTGNYVLLANIYAALGRWKDMEKVRNMMENVGLRKKPGHSTIEIRS 671



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 98/230 (42%), Gaps = 38/230 (16%)

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           SLL  YA    + +   +HC++I  G +S   +ST L   Y+ CG +  A K+F E+P  
Sbjct: 20  SLLNHYAATQSISKTKALHCHVITGGRVSGHILST-LSVTYALCGHIAYARKLFDEMP-- 76

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ--PNEVTFTSALHACS-------- 528
              ++ ++++I  Y   G    A+++F  MV  G++  P+  T+     A          
Sbjct: 77  QSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAGELKSISLG 136

Query: 529 ---HGGLLDE--GLDLF--NFMLENHQTCSRADHYTCIVDLLG---------------RA 566
              HG +L    G+D +  N +L  +    R +    + D++                R 
Sbjct: 137 LVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRN 196

Query: 567 GRLDEA---YDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
           G +++A   +D +    + P HA   ++L  C     +E+G    K + E
Sbjct: 197 GYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEE 246


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/640 (58%), Positives = 490/640 (76%), Gaps = 7/640 (1%)

Query: 8   TLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG----PLFTHLRSSLVRAY---GHV 60
           +L    H    L+  YAAT+S+  TK LH   ITSG    P F HL S L  +Y   G V
Sbjct: 74  SLIANVHRCDSLLCHYAATRSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCV 133

Query: 61  SNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKA 120
              R LFD++S+ S FL+N ++KMY   G   D+L++F  M+  G+  PD YT+P+VIKA
Sbjct: 134 PLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKA 193

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
           C+ ++   +G+ +HGR L++GF  + FV N L+AMYMN G+V  AR+VF+ M + SVVSW
Sbjct: 194 CSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSW 253

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
           NT+ISG+F+N   +EAL VF+ M+ + VEPD A++VS LP+CG+LKE+E+G  +H+LV  
Sbjct: 254 NTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQK 313

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
             L + I   NALVDMY +CG ++EA LVF    E+DV+TWTSMINGY +NG+ ++AL L
Sbjct: 314 NHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALAL 373

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
              MQ +GV PN++T+ SLLSAC+SL  LK+G+SLHAW +++ L+ +V+V TALIDMYAK
Sbjct: 374 CPAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAK 433

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           CN V  SFQVFA+TS K+TVPWNA+L+G +HN LAR+AV LF+ ML+E VE N AT NS+
Sbjct: 434 CNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSV 493

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           +PAYAILADL+Q MN+H YL+R GF+S + V TGLID+YSKCGSL+ AHKIF EIP K+K
Sbjct: 494 IPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEK 553

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
           DI+VWSV+IAGYGMHGHGETAV LF +MV SG+QPNE+TFTS LHACSH GL+D+GL LF
Sbjct: 554 DIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLF 613

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
            +M+EN+ +    +HYTC+VDLLGRAGRLDEAYDLI++MP +  H++WGALLGAC+IH N
Sbjct: 614 KYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLGACLIHQN 673

Query: 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAEN 640
           VELGEVAA+ LFELEPE+ GNY+LL+ +Y+AV RWKDAEN
Sbjct: 674 VELGEVAAERLFELEPESTGNYILLANIYAAVGRWKDAEN 713


>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
 gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 677

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/651 (56%), Positives = 484/651 (74%), Gaps = 6/651 (0%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSS 75
           L+  +AAT+SI+ TK LH  +IT G +  H+ S+L   Y   GH++  R LF+EM + S 
Sbjct: 21  LLNHFAATQSISKTKALHCHVITGGRVSGHILSTLSVTYALCGHITYARKLFEEMPQSSL 80

Query: 76  FLYNTVMKMYAQNGASHDSLKMFLGMLRLG-EYNPDNYTYPIVIKACTDLAWRKLGIALH 134
             YN V++MY + G  HD++ +F+ M+  G +  PD YTYP V KA  +L   KLG+ +H
Sbjct: 81  LSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVH 140

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           GR+L + F  D +V N L+AMYMNFG+V+ AR VFD M    V+SWNT+ISGY++N Y  
Sbjct: 141 GRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMN 200

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           +AL++FDWM+   V+ D A++VS+LP CG+LK++EMGR +H+LV   RLG  I   NALV
Sbjct: 201 DALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALV 260

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           +MY+KCG ++EAR VFDRM  RDV+TWT MINGY  +GDV NAL L +LMQFEGVRPN++
Sbjct: 261 NMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAV 320

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           TI SL+S C     +  G+ LH W ++Q +  ++I+ET+LI MYAKC  V L F+VF+  
Sbjct: 321 TIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGA 380

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
           SK  T PW+AI+AGCV N L   A+ LF++M  E VEPN ATLNSLLPAYA LADL+QAM
Sbjct: 381 SKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAM 440

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI--KDKDIVVWSVIIAGY 492
           NIHCYL + GF+S ++ +TGL+ +YSKCG+LESAHKIF+ I    K KD+V+W  +I+GY
Sbjct: 441 NIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGY 500

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
           GMHG G  A+ +F EMV+SGV PNE+TFTSAL+ACSH GL++EGL LF FMLE+++T +R
Sbjct: 501 GMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLAR 560

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
           ++HYTCIVDLLGRAGRLDEAY+LI T+P +PT  VWGALL ACV H NV+LGE+AA  LF
Sbjct: 561 SNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMAANKLF 620

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           ELEPEN GNYVLL+ +Y+A+ RWKD E VR +M+  GLRK P HS IE+R+
Sbjct: 621 ELEPENTGNYVLLANIYAALGRWKDMEKVRSMMENVGLRKKPGHSTIEIRS 671



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 5/105 (4%)

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            SLL  +A    + +   +HC++I  G +S   +ST L   Y+ CG +  A K+F E+P 
Sbjct: 19  QSLLNHFAATQSISKTKALHCHVITGGRVSGHILST-LSVTYALCGHITYARKLFEEMP- 76

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ--PNEVTF 520
               ++ ++++I  Y   G    A+S+F  MV  GV+  P+  T+
Sbjct: 77  -QSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTY 120


>gi|449476598|ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 709

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/661 (56%), Positives = 484/661 (73%), Gaps = 35/661 (5%)

Query: 8   TLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG----PLFTHLRSSLVRAY---GHV 60
           +L    H    L++ YAAT+S+  TK LH   ITSG    P F HL S L  +Y   G V
Sbjct: 74  SLIANVHRCDSLLRHYAATRSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCV 133

Query: 61  SNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKA 120
              R LFD++S+ S FL+N ++KMY   G   D+L++F  M+  G++ PD YT+P+VIKA
Sbjct: 134 PLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKFWPDKYTFPLVIKA 193

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
           C+ ++   +G+ +HGR L++GF  + FV N L+AMYMN G+V  AR+VF+ M + SVVSW
Sbjct: 194 CSVMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSW 253

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
           NT+ISG+F+N   +EAL VF+ M+ + VEPD A++VS LP+CGYLKE+E+G  +H+LV  
Sbjct: 254 NTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGYLKELELGIKVHKLVQK 313

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
             L + I   NALVDMY +CG ++EA LVF    E+DV+TWTSMINGY +NG+ ++AL L
Sbjct: 314 NHLQEKIEVRNALVDMYSRCGGIDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALAL 373

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
              MQ +GV PN++T+ SLLSAC+SL Y                            MYAK
Sbjct: 374 CPAMQLDGVVPNAVTLASLLSACASLCY----------------------------MYAK 405

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           CN V  SFQVFA+TSKK+TVPWNA+L+G +HN LAR+AV LF+ ML+E VE N AT NS+
Sbjct: 406 CNAVSYSFQVFAKTSKKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSV 465

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           +PAYAILADL+Q MN+H YL+R GF+S + V TGLID+YSKCGSL+ AHKIF EIP K+K
Sbjct: 466 IPAYAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEK 525

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
           DI+VWSV+IAGYGMHGHGETAV LF +MV SG+QPNE+TFTS LHACSH GL+D+GL LF
Sbjct: 526 DIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLF 585

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
            +M+EN+ +    +HYTC+VDLLGRAGRLDEAYDLI++MP +  H++WGALLGAC+IH N
Sbjct: 586 KYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLGACLIHQN 645

Query: 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           VELGEVAA+ LFELEPE+ GNY+LL+ +Y+AV RWKDAENVR +M + GLRK PA S + 
Sbjct: 646 VELGEVAAERLFELEPESTGNYILLANIYAAVGRWKDAENVRHIMSKIGLRKTPAQSSVG 705

Query: 661 V 661
           V
Sbjct: 706 V 706


>gi|255570240|ref|XP_002526080.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534577|gb|EEF36274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 502

 Score =  585 bits (1509), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 298/522 (57%), Positives = 371/522 (71%), Gaps = 56/522 (10%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAYGHVSNVRILFDEMSER 73
           + L++ +AATKS+  TKQLHA  IT+    P   HL+S L R+Y H              
Sbjct: 10  LSLLKHFAATKSLTETKQLHAHTITASLLEPTSAHLQSGLARSYMHCG------------ 57

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
                    K+Y       D+LK++  MLR G   PDNYTYP+VIKAC++L   +LG  +
Sbjct: 58  ---------KLY------FDALKVYSEMLRSGYCFPDNYTYPVVIKACSELGLIELGKMI 102

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           HG+ +                        +AA ++FD M E SV+SWN +I+GYFKN  A
Sbjct: 103 HGQTV-----------------------KEAAERIFDVMKERSVISWNIMINGYFKNGCA 139

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
           ++AL+VF+ M+  GVE DCASVVSVLPACG+LKE+EMGR +H  V    LG  IAA NAL
Sbjct: 140 EKALMVFNQMVDLGVEIDCASVVSVLPACGHLKELEMGRRVHATVEDKDLGNKIAARNAL 199

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           +DMY KCGS+ EARLVFD M ERDV++WTSMINGY LNGD ++AL LF+ MQ E + P+S
Sbjct: 200 IDMYAKCGSMAEARLVFDGMDERDVISWTSMINGYILNGDEKSALTLFRTMQMERIIPSS 259

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
           +TI S+LSAC +L   K GR  H WT++QNL+ E+IVET+LIDMYAKCN V LS+ V  R
Sbjct: 260 VTIASVLSACINL---KDGRCFHGWTMRQNLDSEIIVETSLIDMYAKCNRVDLSYGVLRR 316

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
           TS ++T PWNA+L+GC+HN LA +A+ LF+QML++ VEP+ AT NSLLPAYAILADL  A
Sbjct: 317 TSGERTAPWNAMLSGCIHNDLATEAITLFKQMLLKKVEPDGATFNSLLPAYAILADLLPA 376

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
            NIHCYL + GFLS +EV+T LIDIYSKCGSLESAH+IF+ IPI  +DI  WSVII+GYG
Sbjct: 377 KNIHCYLKKTGFLSGLEVATCLIDIYSKCGSLESAHRIFNAIPIGVRDIFAWSVIISGYG 436

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
           MHGHGETAVSLF++MVQSGV+PNEVTFTS LHACSH GL+DE
Sbjct: 437 MHGHGETAVSLFRQMVQSGVRPNEVTFTSILHACSHAGLVDE 478



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 120/412 (29%), Positives = 201/412 (48%), Gaps = 35/412 (8%)

Query: 195 EALVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
           +AL V+  ML+SG   PD  +   V+ AC  L  IE+G+MIH        G+ +      
Sbjct: 62  DALKVYSEMLRSGYCFPDNYTYPVVIKACSELGLIELGKMIH--------GQTVK----- 108

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
                       A  +FD M ER V++W  MINGY  NG    AL +F  M   GV  + 
Sbjct: 109 ----------EAAERIFDVMKERSVISWNIMINGYFKNGCAEKALMVFNQMVDLGVEIDC 158

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            ++ S+L AC  L  L+ GR +HA    ++L  ++    ALIDMYAKC  +  +  VF  
Sbjct: 159 ASVVSVLPACGHLKELEMGRRVHATVEDKDLGNKIAARNALIDMYAKCGSMAEARLVFDG 218

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
             ++  + W +++ G + NG  + A+ LFR M +E + P+  T+ S+L A     +L+  
Sbjct: 219 MDERDVISWTSMINGYILNGDEKSALTLFRTMQMERIIPSSVTIASVLSA---CINLKDG 275

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
              H + +R    S + V T LID+Y+KC  ++ ++ +        +    W+ +++G  
Sbjct: 276 RCFHGWTMRQNLDSEIIVETSLIDMYAKCNRVDLSYGVLRRT--SGERTAPWNAMLSGCI 333

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF--MLENHQTCS 551
            +     A++LFK+M+   V+P+  TF S L A +   +L + L   N    L+     S
Sbjct: 334 HNDLATEAITLFKQMLLKKVEPDGATFNSLLPAYA---ILADLLPAKNIHCYLKKTGFLS 390

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA-VWGALLGACVIHGNVE 602
             +  TC++D+  + G L+ A+ +   +P+       W  ++    +HG+ E
Sbjct: 391 GLEVATCLIDIYSKCGSLESAHRIFNAIPIGVRDIFAWSVIISGYGMHGHGE 442



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 89/176 (50%), Gaps = 12/176 (6%)

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
           E+A +IF    +K++ ++ W+++I GY  +G  E A+ +F +MV  GV+ +  +  S L 
Sbjct: 109 EAAERIFD--VMKERSVISWNIMINGYFKNGCAEKALMVFNQMVDLGVEIDCASVVSVLP 166

Query: 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           AC H   L+ G  + +  +E+    ++      ++D+  + G + EA  +   M  +   
Sbjct: 167 ACGHLKELEMGRRV-HATVEDKDLGNKIAARNALIDMYAKCGSMAEARLVFDGMDERDVI 225

Query: 586 AVWGALLGACVIHGNVELGEVAAKWLF---ELEPENPGNYVLLSKLYSAVRRWKDA 638
           + W +++   +++G+    E +A  LF   ++E   P + V ++ + SA    KD 
Sbjct: 226 S-WTSMINGYILNGD----EKSALTLFRTMQMERIIPSS-VTIASVLSACINLKDG 275


>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
          Length = 667

 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 284/612 (46%), Positives = 393/612 (64%), Gaps = 11/612 (1%)

Query: 56  AYGHVSNVRILFDEMSERSSFLY-NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTY 114
           A G  S+   L  +M +     + N++++ Y   G   ++L ++  M        D+ T+
Sbjct: 57  ACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMRAF-----DHLTF 111

Query: 115 PIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
           P   KAC  L   + G A+H R L  GF  DT+V N LI+MYM+ G+V AA  VF AM  
Sbjct: 112 PFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAMRN 171

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
            +VVSWN +I+G  KN YA+ AL VF  M   GV  D A+VVSVLPAC   K++  GR +
Sbjct: 172 RTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRAV 231

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGD 293
           H LV    LG  +A  NAL+DMY KC S+ +AR VFD    ++DVV+WT+MI  Y LN  
Sbjct: 232 HRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDR 291

Query: 294 VRNALGLFQLMQFEGVR-PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
              A+ L   M   G   PN +T+  LLSAC+S+   K  +  HA  I+  L+ ++ VET
Sbjct: 292 AFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSDIAVET 351

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           ALID YA+C  +KL      R S +    WNA L+G   +G  +KA+ELF++M+ E V P
Sbjct: 352 ALIDAYARCGKMKLMRLTLERGSWRAET-WNAALSGYTVSGREKKAIELFKRMIAESVRP 410

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           + AT+ S+LPAYA  ADL++  NIHC+L+  GFL   E++TGLID+YSK G L++A  +F
Sbjct: 411 DSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLDAAWALF 470

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
             +P  +KD+V W+ IIAGYG+HGH  TA+ L+  MV+SG +PN VT  + L+ACSH G+
Sbjct: 471 QWLP--EKDVVAWTTIIAGYGIHGHARTAILLYDRMVESGGKPNTVTIATLLYACSHAGM 528

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           +DEG+ +F  M   H      +HY+C+VD+LGRAGR++EA+ LI+ MP +P+ +VWGALL
Sbjct: 529 IDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVWGALL 588

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
           GACV+H NVE GEVAAK LF+L+PEN G+YVLL  +Y+A  RW+D ++VR +M E+GL K
Sbjct: 589 GACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIYAAADRWRDVQDVRRMMVERGLLK 648

Query: 653 APAHSLIEVRNI 664
            P  SL+E R++
Sbjct: 649 EPGSSLVEARSV 660


>gi|218191314|gb|EEC73741.1| hypothetical protein OsI_08374 [Oryza sativa Indica Group]
          Length = 667

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 283/612 (46%), Positives = 392/612 (64%), Gaps = 11/612 (1%)

Query: 56  AYGHVSNVRILFDEMSERSSFLY-NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTY 114
           A G  S+   L  +M +     + N++++ Y   G   ++L ++  M        D+ T+
Sbjct: 57  ACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMRAF-----DHLTF 111

Query: 115 PIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
           P   KAC  L   + G A+H R L  GF  DT+V N LI+MYM+ G+V AA  VF AM  
Sbjct: 112 PFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAMRN 171

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
            +VVSWN +I+G  KN YA+ AL VF  M   GV  D A+VVSVLPAC   K++  GR +
Sbjct: 172 RTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRAV 231

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGD 293
           H LV    LG  +A  NAL+DMY KC S+ +AR VFD    ++DVV+WT+MI  Y LN  
Sbjct: 232 HRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDR 291

Query: 294 VRNALGLFQLMQFEGVR-PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
              A+ L   M   G   PN +T+  LLSAC+S+   K  +  HA  I+  L+ ++ VET
Sbjct: 292 AFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSDIAVET 351

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           ALID YA+C  +KL      R S +    WNA L+G   +G  +KA+ELF++M+ E V P
Sbjct: 352 ALIDAYARCGKMKLMRLTLERGSWRAET-WNAALSGYTVSGREKKAIELFKRMIAESVRP 410

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           + AT+ S+LPAYA  ADL++  NIHC+L+  GFL   E++TGLID+YSK G L++A  +F
Sbjct: 411 DSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLDAAWALF 470

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
             +P  +KD+V W+ IIAGY +HGH  TA+ L+  MV+SG +PN VT  + L+ACSH G+
Sbjct: 471 QWLP--EKDVVAWTTIIAGYSIHGHARTAILLYDRMVESGGKPNTVTIATLLYACSHAGM 528

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           +DEG+ +F  M   H      +HY+C+VD+LGRAGR++EA+ LI+ MP +P+ +VWGALL
Sbjct: 529 IDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVWGALL 588

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
           GACV+H NVE GEVAAK LF+L+PEN G+YVLL  +Y+A  RW+D ++VR +M E+GL K
Sbjct: 589 GACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIYAAADRWRDVQDVRRMMVERGLLK 648

Query: 653 APAHSLIEVRNI 664
            P  SL+E R++
Sbjct: 649 EPGSSLVEARSV 660


>gi|357143056|ref|XP_003572787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Brachypodium distachyon]
          Length = 594

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 281/591 (47%), Positives = 382/591 (64%), Gaps = 12/591 (2%)

Query: 77  LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGR 136
           L N++++ Y   G   +++ ++ GM        D+ T+P   KAC  L   + G A+H R
Sbjct: 9   LANSLLRSYTGLGHYREAVALYSGMRSF-----DHLTFPFAAKACGGLRLSRHGRAVHCR 63

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEA 196
            L  GF  DT+V N LI+MYM  G+V AA  VF AM   +VVSWN +I+G  KN  A+ A
Sbjct: 64  ALAAGFGDDTYVQNALISMYMGCGDVAAAEAVFCAMQNRTVVSWNAVIAGCVKNDCAERA 123

Query: 197 LVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
           L VF  M   G E D A+VVSVLPAC   K + +GR +H+LV    L    A  NAL+DM
Sbjct: 124 LEVFGEMAGDGTEIDRATVVSVLPACAQAKNLSIGRAVHQLVEERGLADYAAVKNALIDM 183

Query: 257 YVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNA--LGLFQLMQFEGVRPNS 313
           Y KC ++  AR VFD    ++DVV+WT MI  Y LN  V  A  LG   LM      PN 
Sbjct: 184 YGKCRNLEGARKVFDDHKYDKDVVSWTVMIGAYVLNDHVEEAFALGHEMLMTSGAPWPNG 243

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
           +T+  LLSACS L   +  + +HA  I+  LE ++IVETAL+D YAKC+ +K+  ++   
Sbjct: 244 VTMAYLLSACSRLSG-RHAKCMHAMCIRLGLESDIIVETALMDAYAKCHNMKM-MELTLE 301

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
              ++T  WNA ++G  HN   +KA+EL ++M+ E   P+ AT+ S+LPAYA  AD++QA
Sbjct: 302 NGSRRTETWNATISGYTHNEQEKKAIELLKRMIAESARPDSATMASILPAYAESADVRQA 361

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
            NIHCYL+  GFL   E++TGLI++Y+K G L+ +  +F  +P  +KD+V W+ +IAGYG
Sbjct: 362 TNIHCYLLTLGFLRSTEITTGLINVYAKAGDLDVSWSLFDGLP--EKDVVAWTTVIAGYG 419

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
           MHG  +T++ L+  MVQ GV+PN VTF S L+ACSH G++DEGL LF  M   H     A
Sbjct: 420 MHGQAQTSILLYNRMVQLGVKPNTVTFASLLYACSHVGMVDEGLQLFEDMRGIHGVMPNA 479

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
           DHY+ +VD++GRAGR++EAY LI  MPL+P+ +VWGALLGACV+H NV+ GEVAAK LFE
Sbjct: 480 DHYSSLVDMVGRAGRIEEAYRLIEDMPLEPSTSVWGALLGACVLHKNVKFGEVAAKHLFE 539

Query: 614 LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
           LEP+N GN+VLL  +Y+A  RW D ++VR  M EKGL K    SL+E R++
Sbjct: 540 LEPKNTGNHVLLGNIYAAADRWSDVQDVRRRMAEKGLSKESGSSLVESRSV 590



 Score = 46.6 bits (109), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 80/172 (46%), Gaps = 7/172 (4%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPL-FTHLRSSLVRAYGHVSNVRI---LFDEMSERS 74
           ++  YA +  +     +H +++T G L  T + + L+  Y    ++ +   LFD + E+ 
Sbjct: 348 ILPAYAESADVRQATNIHCYLLTLGFLRSTEITTGLINVYAKAGDLDVSWSLFDGLPEKD 407

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
              + TV+  Y  +G +  S+ ++  M++LG   P+  T+  ++ AC+ +     G+ L 
Sbjct: 408 VVAWTTVIAGYGMHGQAQTSILLYNRMVQLG-VKPNTVTFASLLYACSHVGMVDEGLQLF 466

Query: 135 GRVL-ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM-WEHSVVSWNTLI 184
             +  I G   +    + L+ M    G ++ A ++ + M  E S   W  L+
Sbjct: 467 EDMRGIHGVMPNADHYSSLVDMVGRAGRIEEAYRLIEDMPLEPSTSVWGALL 518


>gi|242062998|ref|XP_002452788.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
 gi|241932619|gb|EES05764.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
          Length = 662

 Score =  533 bits (1373), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 287/657 (43%), Positives = 408/657 (62%), Gaps = 16/657 (2%)

Query: 15  LVIKLVQQYAATKSIAGTK-QLHAFIITSGPLF----THLRSSLVRAYGHVSNVRILFDE 69
           L + L  + +AT  +  T  QLHA ++ SG L      HL      A G   +   L  +
Sbjct: 11  LALLLRSKSSATPLVPTTAAQLHALLLKSGHLLHCDSIHLLLGSYCACGRPFDAHNLLVQ 70

Query: 70  MSERSSF-LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
           M +     + NT+++ Y   G +  +L ++  M        D+ T+    KAC DL  R+
Sbjct: 71  MPQPPPVSVSNTLLRSYTGLGFNRQALALYSQMRAF-----DHLTFTFAAKACADLRRRR 125

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
            G A+HGR L  GF  D +V N L++MYM   +V +A  VF A+   + VSWNT+I+G  
Sbjct: 126 HGRAVHGRALTAGFGGDGYVQNALVSMYMRCRDVVSAEAVFGALRSRTTVSWNTVITGCV 185

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           K+  A+ AL VF+ M+  GV  D A+VVSVLPAC   +++ MGR +H L     LG   A
Sbjct: 186 KDGRAERALEVFETMVGRGVCIDRATVVSVLPACAQARDLHMGRAVHRLAVVRGLGNYAA 245

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNALGL-FQLMQF 306
             NAL+DMY KC S+ +A+ VFD  S ++DVV+WT+MI  Y LN     A  L  +++  
Sbjct: 246 VKNALIDMYGKCRSLEDAKRVFDEDSYDKDVVSWTAMIGAYVLNDHASKAFALGSEMLVT 305

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
              +PN++T+  LLSAC+SL   K  +  HA  I+  L  + +VETAL+D YAKC  + +
Sbjct: 306 SEAQPNAVTMVHLLSACTSLLSGKHAKCTHALCIRLGLGSDTVVETALVDCYAKCGYMGM 365

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
              V  + S++ T  WNA ++G  H    +KA+ LF+QML E V P+ AT+ S++PAYA 
Sbjct: 366 IDMVVEKGSRR-TETWNAAISGYTHREQGKKALALFKQMLAESVRPDSATMASVIPAYAE 424

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
            ADL QA NIHC L+  G L   +++TGLI++Y+K G L  A ++F  +P  +KD+V W+
Sbjct: 425 SADLVQAKNIHCCLLIRGCLGSTDIATGLINVYAKAGDLGVAWELFQCLP--EKDVVAWT 482

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            +IAGYGMHGH +TA+ L+  M++ GV PN VT  S +++CSH G++DEGL LFN M   
Sbjct: 483 TVIAGYGMHGHAQTAILLYSRMIEMGVTPNTVTMASLMYSCSHAGMVDEGLRLFNDMRGV 542

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
           H     A+HY C+VD+LGRAGR++EAY LI+ MP +P+ +VW ALLGACV+H NVE GEV
Sbjct: 543 HGLMPNAEHYLCLVDMLGRAGRIEEAYRLIQDMPFEPSTSVWSALLGACVLHENVEFGEV 602

Query: 607 AAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           AAK LFELEP+N GNYVLL K+Y+A  RW D +++  VM+ +GL K P  S+++ ++
Sbjct: 603 AAKHLFELEPDNVGNYVLLGKVYAAADRWSDVQDLWRVMEGRGLHKDPGSSVVDAKS 659


>gi|413938143|gb|AFW72694.1| hypothetical protein ZEAMMB73_533387 [Zea mays]
          Length = 663

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 286/638 (44%), Positives = 402/638 (63%), Gaps = 14/638 (2%)

Query: 32  TKQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSF-LYNTVMKMYAQ 87
           T QLHA ++TSG L       L+ +Y   G   + + L  +M + +S  + NT+++ Y+ 
Sbjct: 31  TAQLHALLLTSGHLHYDSPHLLLYSYCACGCPFDAQNLLAQMPQPASVSVSNTLLRSYSG 90

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
            G    +L ++  M        D+ T+    KAC  L  R+ G A+HGR L  GF  D +
Sbjct: 91  LGFHRQALALYSQMRHF-----DHLTFTFAAKACAGLRLRRHGRAVHGRALAAGFGSDAY 145

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           V N +++MYM   +V AA  VF A+   + VSWNT+I+G  K+  A+ AL VF+ M+  G
Sbjct: 146 VQNAIVSMYMRCRDVAAAEAVFVALPSRTTVSWNTVITGCVKDGRAERALEVFETMVDRG 205

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           V  D ASVVSVLPAC   +++  GR +H L     LGK +A  NAL+DMY KCGS+ +AR
Sbjct: 206 VCIDRASVVSVLPACAQARDLHTGRAVHRLAVVRGLGKYVAVKNALIDMYGKCGSLEDAR 265

Query: 268 LVFDRMS-ERDVVTWTSMINGYALNGDVRNALGL-FQLMQFEGVRPNSLTIGSLLSACSS 325
            VFD  S ++DVV+WT MI  Y LN     A  L  +++     +PN++T+  LLSAC+S
Sbjct: 266 RVFDEDSYDKDVVSWTVMIGAYVLNDHASKAFALGSEMLVSSEAQPNAVTMAHLLSACAS 325

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           L   K  +  HA  I+  L  +++VETAL+D YAKC  + +   V  + S++ T  WNA 
Sbjct: 326 LLSGKHAKCTHALCIRLGLGSDIVVETALVDCYAKCGYMGVIDMVVEKGSRR-TETWNAA 384

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           ++G       +KA+ LF++ML E V P+ AT+ S++PAYA  ADL QA NIHC L+  G 
Sbjct: 385 ISGYTQRDQGKKALALFKRMLAESVRPDSATMASVIPAYAESADLVQANNIHCCLLVRGC 444

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
           L   +++TGLID+Y+K G L  A ++F  +P  +KD+V W+ +IAGYGMHGH +TA+ L+
Sbjct: 445 LVSTDIATGLIDLYAKAGDLGVAWELFQCLP--EKDVVAWTTVIAGYGMHGHAQTAMLLY 502

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
             MV+ GV PN VT  S LH+CSH G++DEGL LFN M   H     A+HY C+VD+LGR
Sbjct: 503 SRMVELGVMPNTVTIASLLHSCSHAGMVDEGLRLFNDMHGVHGLMPNAEHYLCLVDMLGR 562

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           AGR++EAY  I  MP +PT +VW +LLGACV+H NVE GEVAAK LFELEP+N GNYVLL
Sbjct: 563 AGRIEEAYRRIEDMPFEPTVSVWSSLLGACVLHENVEFGEVAAKHLFELEPDNVGNYVLL 622

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            K+Y+A  RW D +++R VM+   L K P + +++ ++
Sbjct: 623 GKVYAAAERWSDVQHLRRVMEGMDLHKDPGYCVVDAKS 660


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/583 (43%), Positives = 375/583 (64%), Gaps = 4/583 (0%)

Query: 85  YAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDM 144
           Y +NG  + +L+++  M R G  NPD   +  VIKAC   +  + G  +H  ++  GF+ 
Sbjct: 95  YVKNGFWNKALRLYYQMQRTG-INPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFES 153

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           D  VG  L +MY   G ++ AR+VFD M +  VVSWN +I+GY +N    EAL +F  M 
Sbjct: 154 DVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQ 213

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
            +G++P+ +++VSV+P C +L  +E G+ IH       +  ++   N LV+MY KCG+VN
Sbjct: 214 VNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVN 273

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
            A  +F+RM  RDV +W ++I GY+LN     AL  F  MQ  G++PNS+T+ S+L AC+
Sbjct: 274 TAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACA 333

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
            L+ L++G+ +H + I+   E   +V  AL++MYAKC  V  ++++F R  KK  V WNA
Sbjct: 334 HLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNA 393

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           I++G   +G   +A+ LF +M  + ++P+   + S+LPA A    L+Q   IH Y IR G
Sbjct: 394 IISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSG 453

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
           F S V V TGL+DIY+KCG++ +A K+F  +P  ++D+V W+ +I  YG+HGHGE A++L
Sbjct: 454 FESNVVVGTGLVDIYAKCGNVNTAQKLFERMP--EQDVVSWTTMILAYGIHGHGEDALAL 511

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           F +M ++G + + + FT+ L ACSH GL+D+GL  F  M  ++    + +HY C+VDLLG
Sbjct: 512 FSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLG 571

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
           RAG LDEA  +I+ M L+P   VWGALLGAC IH N+ELGE AAK LFEL+P+N G YVL
Sbjct: 572 RAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVL 631

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV-RNILT 666
           LS +Y+  +RW+D   +R +M EKG++K P  S++ V R++ T
Sbjct: 632 LSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQT 674



 Score =  301 bits (771), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 156/428 (36%), Positives = 244/428 (57%), Gaps = 4/428 (0%)

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
           ++ V W   I GY KN +  +AL ++  M ++G+ PD    +SV+ ACG   +++ GR +
Sbjct: 83  NNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKV 142

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           HE +       ++    AL  MY KCGS+  AR VFDRM +RDVV+W ++I GY+ NG  
Sbjct: 143 HEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQP 202

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             AL LF  MQ  G++PNS T+ S++  C+ L  L++G+ +H + I+  +E +V+V   L
Sbjct: 203 YEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGL 262

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           ++MYAKC  V  + ++F R   +    WNAI+ G   N    +A+  F +M V  ++PN 
Sbjct: 263 VNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNS 322

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
            T+ S+LPA A L  L+Q   IH Y IR GF S   V   L+++Y+KCG++ SA+K+F  
Sbjct: 323 ITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFER 382

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
           +P   K++V W+ II+GY  HGH   A++LF EM   G++P+     S L AC+H   L+
Sbjct: 383 MP--KKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALE 440

Query: 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           +G  +  + + +    S     T +VD+  + G ++ A  L   MP +     W  ++ A
Sbjct: 441 QGKQIHGYTIRSGFE-SNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDV-VSWTTMILA 498

Query: 595 CVIHGNVE 602
             IHG+ E
Sbjct: 499 YGIHGHGE 506



 Score =  258 bits (659), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 146/447 (32%), Positives = 237/447 (53%), Gaps = 5/447 (1%)

Query: 51  SSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPD 110
           +S+    G + N R +FD M +R    +N ++  Y+QNG  +++L +F  M ++    P+
Sbjct: 162 ASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEM-QVNGIKPN 220

Query: 111 NYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD 170
           + T   V+  C  L   + G  +H   + +G + D  V N L+ MY   G V  A K+F+
Sbjct: 221 SSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFE 280

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
            M    V SWN +I GY  N+   EAL  F+ M   G++P+  ++VSVLPAC +L  +E 
Sbjct: 281 RMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQ 340

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
           G+ IH          N    NALV+MY KCG+VN A  +F+RM +++VV W ++I+GY+ 
Sbjct: 341 GQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQ 400

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           +G    AL LF  MQ +G++P+S  I S+L AC+    L++G+ +H +TI+   E  V+V
Sbjct: 401 HGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVV 460

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA-ILAGCVHNGLARKAVELFRQMLVEV 409
            T L+D+YAKC  V  + ++F R  ++  V W   ILA  +H G    A+ LF +M    
Sbjct: 461 GTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIH-GHGEDALALFSKMQETG 519

Query: 410 VEPNDATLNSLLPAYAILADLQQAMN-IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            + +     ++L A +    + Q +    C    YG    +E    L+D+  + G L+ A
Sbjct: 520 TKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEA 579

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           + I   + + + D  VW  ++    +H
Sbjct: 580 NGIIKNMSL-EPDANVWGALLGACRIH 605



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 5/225 (2%)

Query: 371 FARTS-KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           F +T  +   V W   + G V NG   KA+ L+ QM    + P+     S++ A    +D
Sbjct: 76  FTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSD 135

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           LQ    +H  +I  GF S V V T L  +Y+KCGSLE+A ++F  +P   +D+V W+ II
Sbjct: 136 LQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMP--KRDVVSWNAII 193

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           AGY  +G    A++LF EM  +G++PN  T  S +  C+H   L++G  +  + + +   
Sbjct: 194 AGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIE 253

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
            S       +V++  + G ++ A+ L   MP++   A W A++G 
Sbjct: 254 -SDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDV-ASWNAIIGG 296


>gi|226505108|ref|NP_001141927.1| uncharacterized protein LOC100274076 [Zea mays]
 gi|194706472|gb|ACF87320.1| unknown [Zea mays]
 gi|413938142|gb|AFW72693.1| hypothetical protein ZEAMMB73_533387 [Zea mays]
          Length = 583

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 269/571 (47%), Positives = 369/571 (64%), Gaps = 10/571 (1%)

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
           NT+++ Y+  G    +L ++  M        D+ T+    KAC  L  R+ G A+HGR L
Sbjct: 11  NTLLRSYSGLGFHRQALALYSQMRHF-----DHLTFTFAAKACAGLRLRRHGRAVHGRAL 65

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
             GF  D +V N +++MYM   +V AA  VF A+   + VSWNT+I+G  K+  A+ AL 
Sbjct: 66  AAGFGSDAYVQNAIVSMYMRCRDVAAAEAVFVALPSRTTVSWNTVITGCVKDGRAERALE 125

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           VF+ M+  GV  D ASVVSVLPAC   +++  GR +H L     LGK +A  NAL+DMY 
Sbjct: 126 VFETMVDRGVCIDRASVVSVLPACAQARDLHTGRAVHRLAVVRGLGKYVAVKNALIDMYG 185

Query: 259 KCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNALGL-FQLMQFEGVRPNSLTI 316
           KCGS+ +AR VFD  S ++DVV+WT MI  Y LN     A  L  +++     +PN++T+
Sbjct: 186 KCGSLEDARRVFDEDSYDKDVVSWTVMIGAYVLNDHASKAFALGSEMLVSSEAQPNAVTM 245

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
             LLSAC+SL   K  +  HA  I+  L  +++VETAL+D YAKC  + +   V  + S+
Sbjct: 246 AHLLSACASLLSGKHAKCTHALCIRLGLGSDIVVETALVDCYAKCGYMGVIDMVVEKGSR 305

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           + T  WNA ++G       +KA+ LF++ML E V P+ AT+ S++PAYA  ADL QA NI
Sbjct: 306 R-TETWNAAISGYTQRDQGKKALALFKRMLAESVRPDSATMASVIPAYAESADLVQANNI 364

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           HC L+  G L   +++TGLID+Y+K G L  A ++F  +P  +KD+V W+ +IAGYGMHG
Sbjct: 365 HCCLLVRGCLVSTDIATGLIDLYAKAGDLGVAWELFQCLP--EKDVVAWTTVIAGYGMHG 422

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
           H +TA+ L+  MV+ GV PN VT  S LH+CSH G++DEGL LFN M   H     A+HY
Sbjct: 423 HAQTAMLLYSRMVELGVMPNTVTIASLLHSCSHAGMVDEGLRLFNDMHGVHGLMPNAEHY 482

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
            C+VD+LGRAGR++EAY  I  MP +PT +VW +LLGACV+H NVE GEVAAK LFELEP
Sbjct: 483 LCLVDMLGRAGRIEEAYRRIEDMPFEPTVSVWSSLLGACVLHENVEFGEVAAKHLFELEP 542

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           +N GNYVLL K+Y+A  RW D +++R VM+E
Sbjct: 543 DNVGNYVLLGKVYAAAERWSDVQHLRRVMEE 573


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 258/666 (38%), Positives = 390/666 (58%), Gaps = 14/666 (2%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAY---GHVSNVRI 65
           P+T   V++L    A +KS+   K++  FI  +G +  ++L S L   Y   G +     
Sbjct: 94  PRTLCSVLQLC---ADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASR 150

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FDE+    +  +N +M   A++G    S+ +F  M+  G    D+YT+  V K+ + L 
Sbjct: 151 VFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSG-VEMDSYTFSCVSKSFSSLR 209

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
               G  LHG +L +GF     VGN L+A Y+    V +ARKVFD M E  V+SWN++I+
Sbjct: 210 SVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIIN 269

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY  N  A++ L VF  ML SG+E D A++VSV   C   + I +GR +H +       +
Sbjct: 270 GYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSR 329

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
                N L+DMY KCG ++ A+ VF  MS+R VV++TSMI GYA  G    A+ LF+ M+
Sbjct: 330 EDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 389

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            EG+ P+  T+ ++L+ C+    L  G+ +H W  + +L  ++ V  AL+DMYAKC  ++
Sbjct: 390 EEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ 449

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV-VEPNDATLNSLLPAY 424
            +  VF+    K  + WN I+ G   N  A +A+ LF  +L E    P++ T+  +LPA 
Sbjct: 450 EAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC 509

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           A L+   +   IH Y++R G+ S   V+  L+D+Y+KCG+L  AH +F +I    KD+V 
Sbjct: 510 ASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIA--SKDLVS 567

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+V+IAGYGMHG G+ A++LF +M Q+G++ +E++F S L+ACSH GL+DEG   FN M 
Sbjct: 568 WTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMR 627

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
              +     +HY CIVD+L R G L +AY  I  MP+ P   +WGALL  C IH +V+L 
Sbjct: 628 HECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLA 687

Query: 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR-- 662
           E  A+ +FELEPEN G YVL++ +Y+   +W+  + +R  + ++GLRK P  S IE++  
Sbjct: 688 EKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGR 747

Query: 663 -NILTA 667
            NI  A
Sbjct: 748 VNIFVA 753



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 154/530 (29%), Positives = 268/530 (50%), Gaps = 10/530 (1%)

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
           +RS    NT ++ + ++G   +++K+   +   G+++ D  T   V++ C D    K G 
Sbjct: 58  DRSVTDANTQLRRFCESGNLENAVKL---LCVSGKWDIDPRTLCSVLQLCADSKSLKDGK 114

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +   +   GF +D+ +G+ L  MY N G++K A +VFD +     + WN L++   K+ 
Sbjct: 115 EVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSG 174

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
               ++ +F  M+ SGVE D  +   V  +   L+ +  G  +H  +     G+  +  N
Sbjct: 175 DFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGN 234

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           +LV  Y+K   V+ AR VFD M+ERDV++W S+INGY  NG     L +F  M   G+  
Sbjct: 235 SLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEI 294

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +  TI S+ + C+    +  GR++H+  +K     E      L+DMY+KC  +  +  VF
Sbjct: 295 DLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVF 354

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
              S +  V + +++AG    GLA +AV+LF +M  E + P+  T+ ++L   A    L 
Sbjct: 355 REMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLD 414

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           +   +H ++        + VS  L+D+Y+KCGS++ A  +FSE+ +  KDI+ W+ II G
Sbjct: 415 EGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV--KDIISWNTIIGG 472

Query: 492 YGMHGHGETAVSLFKEMVQSG-VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           Y  + +   A+SLF  +++     P+E T    L AC+     D+G ++  +++ N    
Sbjct: 473 YSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFS 532

Query: 551 SRADHY-TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            R  H    +VD+  + G L  A+ L   +  K     W  ++    +HG
Sbjct: 533 DR--HVANSLVDMYAKCGALLLAHMLFDDIASKDL-VSWTVMIAGYGMHG 579


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 257/666 (38%), Positives = 391/666 (58%), Gaps = 14/666 (2%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRI 65
           P+T   V++L    A +KS+   K++  FI  +G  L ++L S L   Y   G +     
Sbjct: 94  PRTLCSVLQLC---ADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASR 150

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD++    +  +N +M   A++G    S+ +F  M+  G    D+YT+  V K+ + L 
Sbjct: 151 VFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSG-VEMDSYTFSCVSKSFSSLR 209

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
               G  LHG +L +GF     VGN L+A Y+    V +ARKVFD M E  V+SWN++I+
Sbjct: 210 SVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIIN 269

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY  N  A++ L VF  ML SG+E D A++VSV   C   + I +GR +H         +
Sbjct: 270 GYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSR 329

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
                N L+DMY KCG ++ A++VF  MS R VV++TSMI GYA  G    A+ LF+ M+
Sbjct: 330 EDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEME 389

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            EG+ P+  T+ ++L+ C+    L  G+ +H W  + ++  ++ V  AL+DMYAKC  ++
Sbjct: 390 EEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMR 449

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV-VEPNDATLNSLLPAY 424
            +  VF+    K  + WN ++ G   N  A +A+ LF  +LVE    P++ T+  +LPA 
Sbjct: 450 EAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPAC 509

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           A L+   +   IH Y++R G+ S   V+  L+D+Y+KCG+L  A  +F +I    KD+V 
Sbjct: 510 ASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDIT--SKDLVS 567

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+V+IAGYGMHG G+ A++LF +M Q+G++P+E++F S L+ACSH GL+DEG   FN M 
Sbjct: 568 WTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMR 627

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
              +     +HY CIVD+L R G L +AY  I  MP+ P   +WGALL  C IH +V+L 
Sbjct: 628 HECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLA 687

Query: 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR-- 662
           E  A+ +FELEPEN G YVL++ +Y+   +W++ + +R  + ++GLRK P  S IE++  
Sbjct: 688 ERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGR 747

Query: 663 -NILTA 667
            NI  A
Sbjct: 748 VNIFVA 753



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 155/530 (29%), Positives = 267/530 (50%), Gaps = 10/530 (1%)

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
           +RS    NT ++ + ++G   +++K+   +   G+++ D  T   V++ C D    K G 
Sbjct: 58  DRSVTDANTQLRRFCESGNLKNAVKL---LHVSGKWDIDPRTLCSVLQLCADSKSLKDGK 114

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +   +   GF +D+ +G+ L  MY N G++K A +VFD +     + WN L++   K+ 
Sbjct: 115 EVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSG 174

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
               ++ +F  M+ SGVE D  +   V  +   L+ +  G  +H  +     G+  +  N
Sbjct: 175 DFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGN 234

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           +LV  Y+K   V+ AR VFD M+ERDV++W S+INGY  NG     L +F  M F G+  
Sbjct: 235 SLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEI 294

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +  TI S+ + C+    +  GR++H + +K     E      L+DMY+KC  +  +  VF
Sbjct: 295 DLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVF 354

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
              S +  V + +++AG    GLA +AV+LF +M  E + P+  T+ ++L   A    L 
Sbjct: 355 REMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLD 414

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           +   +H ++        + VS  L+D+Y+KCGS+  A  +FSE+ +  KDI+ W+ +I G
Sbjct: 415 EGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRV--KDIISWNTVIGG 472

Query: 492 YGMHGHGETAVSLFK-EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           Y  + +   A+SLF   +V+    P+E T    L AC+     D+G ++  +++ N    
Sbjct: 473 YSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFS 532

Query: 551 SRADHY-TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            R  H    +VD+  + G L  A  L   +  K     W  ++    +HG
Sbjct: 533 DR--HVANSLVDMYAKCGALLLARLLFDDITSKDL-VSWTVMIAGYGMHG 579


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/657 (38%), Positives = 390/657 (59%), Gaps = 12/657 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAY---GHVSNVRILFDEMSERS 74
           ++Q  A  KSI   +++ + I +SG +    L   LV  Y   G +   R++FD++SE  
Sbjct: 156 ILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESK 215

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
            FL+N ++  Y+ +G   +S+ +F  ML LG   P++YT+  ++K    +A  + G  +H
Sbjct: 216 IFLWNLMISEYSGSGNYGESINLFKQMLELG-IKPNSYTFSSILKCFAAVARVEEGRQVH 274

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           G +   GF+    V N LI+ Y    +V+ A+K+FD + +  V+SWN++ISGY KN    
Sbjct: 275 GLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDD 334

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-VAGGRLGKNIAAWNAL 253
             + +F  ML  GV+ D A++V+V  AC  +  + +G+++H   +    L + +   N L
Sbjct: 335 RGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTL 394

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           +DMY KCG +N A  VF+RM E+ VV+WTSMI GY   G    A+ LF  M+  GV P+ 
Sbjct: 395 LDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDV 454

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
             + S+L+AC+    LK G+ +H +  + NLE    V  AL DMYAKC  +K +  VF+ 
Sbjct: 455 YAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSH 514

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
             KK  + WN ++ G   N L  +A+ LF +M  E  +P+  T+  +LPA A LA L + 
Sbjct: 515 MKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKG 573

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             IH Y +R G+     V+  ++D+Y KCG L  A  +F  IP  +KD+V W+V+IAGYG
Sbjct: 574 REIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIP--NKDLVSWTVMIAGYG 631

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
           MHG+G  A++ F +M  +G++P+EV+F S L+ACSH GLLDEG  +FN M +  Q     
Sbjct: 632 MHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNL 691

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
           +HY C+VDLL R G L +A+  I+ MP+KP   +WGALL  C IH +V+L E  A+ +FE
Sbjct: 692 EHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFE 751

Query: 614 LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR---NILTA 667
           LEPEN G YVLL+ +Y+   +W++ + +R  + ++GL+K P  S IE++   NI  A
Sbjct: 752 LEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVA 808



 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 152/497 (30%), Positives = 258/497 (51%), Gaps = 14/497 (2%)

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
           N D   Y  +++ C +    + G  +   +  +G  +D  +G  L+ MY+  G++K  R 
Sbjct: 147 NFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRM 206

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VFD + E  +  WN +IS Y  +    E++ +F  ML+ G++P+  +  S+L     +  
Sbjct: 207 VFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVAR 266

Query: 228 IEMGRMIHELVAGGRLGKNI--AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           +E GR +H L+   +LG N      N+L+  Y     V  A+ +FD +++RDV++W SMI
Sbjct: 267 VEEGRQVHGLIC--KLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMI 324

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK-QNL 344
           +GY  NG     + +F  M   GV  +  T+ ++  AC+++  L  G+ LH+++IK   L
Sbjct: 325 SGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATL 384

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
           + EV     L+DMY+KC  +  + +VF R  +K  V W +++ G V  GL+  A++LF +
Sbjct: 385 DREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDE 444

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           M    V P+   + S+L A AI  +L+    +H Y+      +   VS  L D+Y+KCGS
Sbjct: 445 MKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGS 504

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           ++ AH +FS   +K KD++ W+ +I GY  +     A++LF EM Q   +P+  T    L
Sbjct: 505 MKDAHDVFSH--MKKKDVISWNTMIGGYTKNSLPNEALTLFAEM-QRESKPDGTTVACIL 561

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLK 582
            AC+    LD+G ++  + L N  +    D Y    +VD+  + G L  A  L   +P K
Sbjct: 562 PACASLAALDKGREIHGYALRNGYS---EDKYVTNAVVDMYVKCGLLVLARSLFDMIPNK 618

Query: 583 PTHAVWGALLGACVIHG 599
              + W  ++    +HG
Sbjct: 619 DLVS-WTVMIAGYGMHG 634



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 181/395 (45%), Gaps = 45/395 (11%)

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIG---SLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
           GD++NA+ L    Q      ++  +G   S+L  C+    ++ GR + +      +  + 
Sbjct: 131 GDLKNAMELLCSSQ-----NSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDG 185

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
           I+   L+ MY KC  +K    VF + S+ K   WN +++    +G   +++ LF+QML  
Sbjct: 186 ILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLEL 245

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            ++PN  T +S+L  +A +A +++   +H  + + GF S   V   LI  Y     +  A
Sbjct: 246 GIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCA 305

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            K+F E+   D+D++ W+ +I+GY  +G  +  + +F +M+  GV  +  T  +   AC+
Sbjct: 306 QKLFDELT--DRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACA 363

Query: 529 HGG----------------LLDEGLDLFNFMLENHQTC----------SRADH-----YT 557
           + G                 LD  +   N +L+ +  C           R D      +T
Sbjct: 364 NIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWT 423

Query: 558 CIVDLLGRAGRLDEA---YDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
            ++    R G  D A   +D +++  + P      ++L AC I+GN++ G++   ++ E 
Sbjct: 424 SMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIREN 483

Query: 615 EPE-NPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
             E N      L+ +Y+     KDA +V   M +K
Sbjct: 484 NLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKK 518


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/614 (38%), Positives = 375/614 (61%), Gaps = 6/614 (0%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           SSL++ Y   G + + R LFD+M  +   L+N ++  + + G  + ++K+F  M R  + 
Sbjct: 11  SSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDM-RNCQT 69

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            P++ T+  V+  C   A  + G  LHG V+  GF  D  V N L+AMY  FG++  A K
Sbjct: 70  KPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALK 129

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F+ M + +VV+WN +I+G+ +N +  EA ++F  M+ +GV PD  +  S LP+      
Sbjct: 130 LFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESAS 189

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           ++ G+ IH  +    +  ++   +AL+D+Y KC  V  A  +F + +  D+V  T++I+G
Sbjct: 190 LKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISG 249

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y LNG   +AL +F+ +  E + PN++T+ S+L AC+ L  L  G+ LHA  +K  L+  
Sbjct: 250 YVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDER 309

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
             V +A++DMYAKC  + L++Q+F R  +K  V WNAI+  C  NG  ++A++LFRQM  
Sbjct: 310 RHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGR 369

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           E +  +  ++++ L A A L  L     IH ++I+  F S V   + LID+Y KCG+L  
Sbjct: 370 EGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSV 429

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A  +F    +++K+ V W+ IIA YG HGH E +++LF +M++ G+QP+ VTF + L AC
Sbjct: 430 ARCVFDM--MREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSAC 487

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
            H G +D+G+  F  M E +   +R +HY CIVDL GRAGRL+EA++ I+ MP  P   V
Sbjct: 488 GHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGV 547

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           WG LLGAC +HGNVEL EVA++ L +L+PEN G YVLLS +++   +W     +R +M +
Sbjct: 548 WGTLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKK 607

Query: 648 KGLRKAPAHSLIEV 661
           +G++K P +S IEV
Sbjct: 608 RGVQKVPGYSWIEV 621



 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 162/521 (31%), Positives = 279/521 (53%), Gaps = 12/521 (2%)

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           GF++D FVG+ LI +Y   G ++ AR++FD M     V WN +++G+ K      A+ VF
Sbjct: 2   GFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVF 61

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           + M     +P+  +  SVL  C      E G  +H LV       +    NALV MY K 
Sbjct: 62  EDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKF 121

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           G +++A  +F+ M + +VVTW  MI G+  NG +  A  LF  M   GV P+S+T  S L
Sbjct: 122 GQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFL 181

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
            + +    LK+G+ +H + ++  +  +V +++ALID+Y KC  V ++ ++F +++    V
Sbjct: 182 PSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIV 241

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
              AI++G V NGL   A+E+FR +L E + PN  TL S+LPA A LA L     +H  +
Sbjct: 242 VCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANI 301

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           +++G      V + ++D+Y+KCG L+ A++IF  +P  +KD V W+ II     +G  + 
Sbjct: 302 LKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMP--EKDAVCWNAIITNCSQNGKPQE 359

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560
           A+ LF++M + G+  + V+ ++AL AC++   L  G  + +FM++     S     + ++
Sbjct: 360 AIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFD-SEVFAESALI 418

Query: 561 DLLGRAGRLDEA---YDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE--LE 615
           D+ G+ G L  A   +D++R    +     W +++ A   HG++E+       + E  ++
Sbjct: 419 DMYGKCGNLSVARCVFDMMR----EKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQ 474

Query: 616 PENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           P++     +LS    A +  K  +  R + +E G+     H
Sbjct: 475 PDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEH 515



 Score =  245 bits (625), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 140/474 (29%), Positives = 248/474 (52%), Gaps = 7/474 (1%)

Query: 33  KQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
            QLH  +I+ G    PL  +   ++   +G +S+   LF+ M + +   +N ++  + QN
Sbjct: 93  NQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQN 152

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   ++  +F  M+  G  +PD+ T+   + + T+ A  K G  +HG +L  G  +D F+
Sbjct: 153 GFMDEASLLFSEMISAG-VSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFL 211

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            + LI +Y    +V  A K+F       +V    +ISGY  N    +AL +F W+L+  +
Sbjct: 212 KSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKM 271

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P+  ++ SVLPAC  L  + +G+ +H  +    L +     +A++DMY KCG ++ A  
Sbjct: 272 SPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQ 331

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +F RM E+D V W ++I   + NG  + A+ LF+ M  EG+  + ++I + LSAC++L  
Sbjct: 332 IFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPA 391

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L  G+++H++ IK   + EV  E+ALIDMY KC  + ++  VF    +K  V WN+I+A 
Sbjct: 392 LHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAA 451

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN-IHCYLIRYGFLS 447
              +G    ++ LF +ML + ++P+  T  ++L A      + + +    C    YG  +
Sbjct: 452 YGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPA 511

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
            +E    ++D++ + G L  A +    +P    D  VW  ++    +HG+ E A
Sbjct: 512 RMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDD-GVWGTLLGACRVHGNVELA 564


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 250/666 (37%), Positives = 387/666 (58%), Gaps = 12/666 (1%)

Query: 7   HTLPKTTHLVIKLVQQYAAT--KSIAGTKQLHAFI---ITSGPLFTHLRS----SLVRAY 57
           HTL +  H+   + +  AA   +     K+LH  I   I +G    HL      SL   Y
Sbjct: 35  HTLSERAHIPSHVYKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKY 94

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G ++    +F+ + ++   LY+T++K YA+N +   +L  FL  +R  +  P  Y +  +
Sbjct: 95  GSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALA-FLCRMRYDDVKPVVYNFTYL 153

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +K C D A  K G  +HG+++   F  + F    ++ MY    ++  A K+FD M E  +
Sbjct: 154 LKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDL 213

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSWNT+I+G+ +N +AK+AL +   M   G  PD  ++V+VLPA   +  + +G+ IH  
Sbjct: 214 VSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGY 273

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                  K +    AL DMY KCGSV  ARL+FD M ++ VV+W SM++GY  NG+   A
Sbjct: 274 AIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKA 333

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + +F+ M  EG+ P  +TI   L AC+ L  L+RG+ +H +  + NL  ++ V  +LI M
Sbjct: 334 IAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISM 393

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y+KC  V ++  +F   + +  V WNA++ G   NG   +A+  F +M    ++P+  T+
Sbjct: 394 YSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTM 453

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            S++PA A L+  + A  IH  +IR      + V+T L+D+YSKCG++  A K+F    I
Sbjct: 454 VSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDM--I 511

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            D+ ++ W+ +I GYG HG G  A+ LF +M +  V+PN++T+ S + ACSH GL+DEGL
Sbjct: 512 SDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGL 571

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             F  M +++      DHY  +VDLLGRAGR+ EA+D I  MP+ P   V+GA+LGAC I
Sbjct: 572 RHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKI 631

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           H N+E+GE AAK LFEL P+  G +VLL+ +Y++  +W     VR  M++KGL+K P  S
Sbjct: 632 HKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCS 691

Query: 658 LIEVRN 663
           ++E+RN
Sbjct: 692 VVELRN 697


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/605 (40%), Positives = 361/605 (59%), Gaps = 7/605 (1%)

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           FDE+    +  +N +M   A++G    S+ +F  M+  G    D+YT+  V K+ + L  
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSG-VEMDSYTFSCVSKSFSSLRS 59

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
              G  LHG +L +GF     VGN L+A Y+    V +ARKVFD M E  V+SWN++I+G
Sbjct: 60  VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 119

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
           Y  N  A++ L VF  ML SG+E D A++VSV   C   + I +GR +H +       + 
Sbjct: 120 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRE 179

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
               N L+DMY KCG ++ A+ VF  MS+R VV++TSMI GYA  G    A+ LF+ M+ 
Sbjct: 180 DRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 239

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
           EG+ P+  T+ ++L+ C+    L  G+ +H W  + +L  ++ V  AL+DMYAKC  ++ 
Sbjct: 240 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQE 299

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV-VEPNDATLNSLLPAYA 425
           +  VF+    K  + WN I+ G   N  A +A+ LF  +L E    P++ T+  +LPA A
Sbjct: 300 AELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACA 359

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            L+   +   IH Y++R G+ S   V+  L+D+Y+KCG+L  AH +F +I    KD+V W
Sbjct: 360 SLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIA--SKDLVSW 417

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           +V+IAGYGMHG G+ A++LF +M Q+G++ +E++F S L+ACSH GL+DEG   FN M  
Sbjct: 418 TVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRH 477

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
             +     +HY CIVD+L R G L +AY  I  MP+ P   +WGALL  C IH +V+L E
Sbjct: 478 ECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAE 537

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR--- 662
             A+ +FELEPEN G YVL++ +Y+   +W+  + +R  + ++GLRK P  S IE++   
Sbjct: 538 KVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRV 597

Query: 663 NILTA 667
           NI  A
Sbjct: 598 NIFVA 602



 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 154/485 (31%), Positives = 255/485 (52%), Gaps = 16/485 (3%)

Query: 21  QQYAATKSIAGTKQLHAFIITSGPLFTHLRS---SLVRAY---GHVSNVRILFDEMSERS 74
           + +++ +S+ G +QLH FI+ SG  F    S   SLV  Y     V + R +FDEM+ER 
Sbjct: 52  KSFSSLRSVHGGEQLHGFILKSG--FGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERD 109

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
              +N+++  Y  NG +   L +F+ ML  G    D  T   V   C D     LG A+H
Sbjct: 110 VISWNSIINGYVSNGLAEKGLSVFVQMLVSG-IEIDLATIVSVFAGCADSRLISLGRAVH 168

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
              +   F  +    N L+ MY   G++ +A+ VF  M + SVVS+ ++I+GY +   A 
Sbjct: 169 SIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAG 228

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           EA+ +F+ M + G+ PD  +V +VL  C   + ++ G+ +HE +    LG +I   NAL+
Sbjct: 229 EAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALM 288

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG-VRPNS 313
           DMY KCGS+ EA LVF  M  +D+++W ++I GY+ N     AL LF L+  E    P+ 
Sbjct: 289 DMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDE 348

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            T+  +L AC+SL    +GR +H + ++     +  V  +L+DMYAKC  + L+  +F  
Sbjct: 349 RTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDD 408

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA---ILADL 430
            + K  V W  ++AG   +G  ++A+ LF QM    +E ++ +  SLL A +   ++ + 
Sbjct: 409 IASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEG 468

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
            +  NI  +  +      VE    ++D+ ++ G L  A++    +PI   D  +W  ++ 
Sbjct: 469 WRFFNIMRHECK--IEPTVEHYACIVDMLARTGDLIKAYRFIENMPIP-PDATIWGALLC 525

Query: 491 GYGMH 495
           G  +H
Sbjct: 526 GCRIH 530



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 125/242 (51%), Gaps = 2/242 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +    ++F EM  +    +NT++  Y++N  ++++L +F  +L    ++PD  T   V
Sbjct: 295 GSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACV 354

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + AC  L+    G  +HG ++  G+  D  V N L+ MY   G +  A  +FD +    +
Sbjct: 355 LPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDL 414

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHE 236
           VSW  +I+GY  + + KEA+ +F+ M ++G+E D  S VS+L AC +   ++ G R  + 
Sbjct: 415 VSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNI 474

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVR 295
           +    ++   +  +  +VDM  + G + +A    + M    D   W +++ G  ++ DV+
Sbjct: 475 MRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVK 534

Query: 296 NA 297
            A
Sbjct: 535 LA 536


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/647 (39%), Positives = 383/647 (59%), Gaps = 8/647 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERS 74
           ++Q  A  KS+   K++H+ II++G  +   L + LV  Y   G +   R +FD++    
Sbjct: 100 VLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK 159

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
            FL+N +M  YA+ G   +S+ +F  M +LG    + YT+  V+K    L   K    +H
Sbjct: 160 VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVG-NCYTFTCVLKCFAALGKVKECKRVH 218

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           G VL  GF  +T V N LIA Y  FG V++A  +FD + E  VVSWN++I+G   N ++ 
Sbjct: 219 GYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSG 278

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
             L +F  ML  GVE D  ++VSVL AC  +  + +GR +H         + +   N L+
Sbjct: 279 NGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLL 338

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           DMY KCG++N A  VF +M +  +V+WTS+I  Y   G   +A+GLF  MQ +GVRP+  
Sbjct: 339 DMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIY 398

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T+ S++ AC+    L +GR +H++ IK  +   + V  ALI+MYAKC  V+ +  VF++ 
Sbjct: 399 TVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKI 458

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
             K  V WN ++ G   N L  +A+ELF  M  +  +P+D T+  +LPA A LA L +  
Sbjct: 459 PVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQF-KPDDITMACVLPACAGLAALDKGR 517

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            IH +++R G+ S + V+  L+D+Y+KCG L  A  +F  IP   KD++ W+V+IAGYGM
Sbjct: 518 EIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIP--KKDLISWTVMIAGYGM 575

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           HG G  A+S F EM  +G++P+E +F++ L+ACSH GLL+EG   FN M        + +
Sbjct: 576 HGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLE 635

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HY C+VDLL R G L +AY  I +MP+KP   +WG LL  C IH +V+L E  A+ +FEL
Sbjct: 636 HYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFEL 695

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           EP+N   YV+L+ +Y+   +W++ + +R  M ++G ++ P  S IEV
Sbjct: 696 EPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEV 742



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 180/579 (31%), Positives = 288/579 (49%), Gaps = 27/579 (4%)

Query: 39  IITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHD----- 93
           I  S P  TH  +S    Y   S+ R +F +   R+  L++TV    +    +H      
Sbjct: 8   IPISSPYHTHKTTS---NYAKKSHNRFIFFKQPRRTCLLHSTVCVSPSFTNTTHSVTQNQ 64

Query: 94  --SLKMF--LGMLRLG--------EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
              +  F  +G LR           Y     +Y  V++ C +    + G  +H  ++  G
Sbjct: 65  NAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNG 124

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
             +D  +G  L+ MY+N G++   RK+FD +    V  WN L+S Y K    +E++ +F 
Sbjct: 125 ISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFK 184

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
            M K GV  +C +   VL     L +++  + +H  V     G N A  N+L+  Y K G
Sbjct: 185 KMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFG 244

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
            V  A  +FD +SE DVV+W SMING  +NG   N L +F  M   GV  +  T+ S+L 
Sbjct: 245 GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLV 304

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
           AC+++  L  GR+LH + +K     EV+    L+DMY+KC  +  + +VF +      V 
Sbjct: 305 ACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVS 364

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           W +I+A  V  GL   A+ LF +M  + V P+  T+ S++ A A  + L +  ++H Y+I
Sbjct: 365 WTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVI 424

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           + G  S + V+  LI++Y+KCGS+E A  +FS+IP+  KDIV W+ +I GY  +     A
Sbjct: 425 KNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPV--KDIVSWNTMIGGYSQNLLPNEA 482

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC-IV 560
           + LF +M Q   +P+++T    L AC+    LD+G ++   +L          H  C +V
Sbjct: 483 LELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL--HVACALV 539

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           D+  + G L  A  L   +P K   + W  ++    +HG
Sbjct: 540 DMYAKCGLLVLAQLLFDMIPKKDLIS-WTVMIAGYGMHG 577


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 249/666 (37%), Positives = 385/666 (57%), Gaps = 12/666 (1%)

Query: 7   HTLPKTTHLVIKLVQQYAAT--KSIAGTKQLHAFI---ITSGPLFTHLRS----SLVRAY 57
           HTL +  H+   + +  AA   +     K+LH  I   I +G    HL      SL   Y
Sbjct: 35  HTLSERAHIPSHVYKHPAAVLLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKY 94

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G ++    +F+ + ++   LY+T++K YA+N +   +L  FL  +R  +  P  Y +  +
Sbjct: 95  GSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALA-FLCRMRYDDVKPVVYNFTYL 153

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +K C D A  K G  +HG+++   F  + F    ++ MY    ++  A K+FD M E  +
Sbjct: 154 LKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDL 213

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSWNT+I+G+ +N +AK+AL +   M   G  PD  ++V+VLPA   +  + +G+ IH  
Sbjct: 214 VSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGY 273

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                  K +    AL DMY KCGSV  ARL+FD M ++ VV+W SM++GY  NG+   A
Sbjct: 274 AIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKA 333

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + +F+ M  EG+ P  +TI   L AC+ L  L+RG+ +H +  + NL  ++ V  +LI M
Sbjct: 334 IAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISM 393

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y+KC  V ++  +F   + +  V WNA++ G   NG   +A+  F +M    ++P+  T+
Sbjct: 394 YSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTM 453

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            S++PA A L+  + A  IH  +IR      + V+T L+D+YSKCG++  A K+F    I
Sbjct: 454 VSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDM--I 511

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            D+ ++ W+ +I GYG HG G  A+ LF +M +  V+PN++T+ S + ACSH GL+DEGL
Sbjct: 512 SDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGL 571

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             F  M +++      DHY  +VDLLGRAGR+ EA+D I  MP+ P   V+GA  GAC I
Sbjct: 572 RHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKI 631

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           H N+E+GE AAK LFEL P+  G +VLL+ +Y++  +W     VR  M++KGL+K P  S
Sbjct: 632 HKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCS 691

Query: 658 LIEVRN 663
           ++E+RN
Sbjct: 692 VVELRN 697


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 262/644 (40%), Positives = 376/644 (58%), Gaps = 13/644 (2%)

Query: 24  AATKSIAGTKQLHAFIITSGPLFTHLRS----SLVRAYGHVSNVRILFDEMSERSSFLYN 79
           + TK++   K+LHA ++ SG + ++  S    +L  + G VS  R  FD++  +  + +N
Sbjct: 85  SCTKTLLA-KRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWN 143

Query: 80  TVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLI 139
           +++  Y +NG   +++  F  +L + ++  D YT+P V+KAC  L     G  +H  V  
Sbjct: 144 SMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLV---DGRKIHCWVFK 200

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
            GF  D FV   LI MY  FG V  AR +FD M    + SWN +ISG  +N  A +AL V
Sbjct: 201 LGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDV 260

Query: 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVK 259
            D M   G+  D  +V S+LP C  L +I    +IH  V    L   +   NAL++MY K
Sbjct: 261 LDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAK 320

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
            G++ +A+ VF +M  RDVV+W S+I  Y  N D   A G F  MQ  G+ P+ LT+ SL
Sbjct: 321 FGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSL 380

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECE-VIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
            S  +     K  RS+H + +++    E V++  A++DMYAK  ++  + +VF     K 
Sbjct: 381 ASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKD 440

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQM-LVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
            V WN +++G   NGLA +A+E++R M     ++ N  T  S+L AYA +  LQQ M IH
Sbjct: 441 VVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIH 500

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            +LI+      V V T LID+Y KCG L  A  +F ++P +    V W+ II+ +G+HGH
Sbjct: 501 GHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESS--VPWNAIISCHGIHGH 558

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
           GE A+ LF+EM   GV+P+ VTF S L ACSH GL+DEG   F+ M E +       HY 
Sbjct: 559 GEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQE-YGIKPSLKHYG 617

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617
           C+VDLLGRAG L+ AYD I+ MPL P  ++WGALLGAC IHGN+ELG+ A+  LFE++ E
Sbjct: 618 CMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSE 677

Query: 618 NPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           N G YVLLS +Y+ V +W+  + VR +  E+GL+K P  S IEV
Sbjct: 678 NVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEV 721


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/684 (36%), Positives = 401/684 (58%), Gaps = 54/684 (7%)

Query: 1   MNGPSHHTLPKTTHLVIK------------LVQQYAATKSIAGTKQLHAFIITSG-PLFT 47
            NGP     PK T +  K            L+Q    + S    K +H  +I++G     
Sbjct: 50  FNGPDS---PKPTSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDA 106

Query: 48  HLRSSLVRAYGH------VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGM 101
           +L + ++  Y        +   R LF+EM ER+   +NT++  YA+     ++  +F  M
Sbjct: 107 YLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRM 166

Query: 102 LRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGE 161
           L++G   PDN+T+   ++ C  L  R  G  +H +++  GF  DTFVGN LI MY    +
Sbjct: 167 LKIG-VCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDD 225

Query: 162 VKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS--GVEPDCASVVSVL 219
            ++  KVFD M E + V+WN++IS   +  +  +ALV+F  M +S  G++PD  +  ++L
Sbjct: 226 EESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLL 285

Query: 220 PACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVV 279
             C   +    GR IH  +    + KNI     LV MY +CG +N A+ +F+RM+ER+  
Sbjct: 286 TLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAY 345

Query: 280 TWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWT 339
           +W SMI GY  NG+ + AL LF+ MQ  G++P+  ++ S+LS+C SL   ++GR LH + 
Sbjct: 346 SWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFI 405

Query: 340 IKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK--KTVPWNAILAGCVHNGLARK 397
           ++  +E E I++  L+DMYAKC  +  +++V+ +T KK   T  WN+ILAG  + GL ++
Sbjct: 406 VRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKE 465

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
           +   F +ML   +E +  T+ ++                         ++++ + T L+D
Sbjct: 466 SFNHFLEMLESDIEYDVLTMVTI-------------------------VNLLVLETALVD 500

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
           +YSKCG++  A  +F    +  K+IV W+ +I+GY  HG  + A+ L++EM + G+ PNE
Sbjct: 501 MYSKCGAITKARTVFDN--MNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNE 558

Query: 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIR 577
           VTF + L ACSH GL++EGL +F  M E++   ++A+HYTC+VDLLGRAGRL++A + + 
Sbjct: 559 VTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVE 618

Query: 578 TMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKD 637
            MP++P  + WGALLGAC +H ++++G +AA+ LFEL+P+NPG YV++S +Y+A  RWK+
Sbjct: 619 KMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKE 678

Query: 638 AENVRDVMDEKGLRKAPAHSLIEV 661
            E++R +M  KG++K P  S IE+
Sbjct: 679 VEDIRQMMKMKGVKKDPGVSWIEI 702


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/647 (38%), Positives = 380/647 (58%), Gaps = 8/647 (1%)

Query: 19   LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERS 74
            ++Q  A  KS+   K++H+ II++G  +   L + LV  Y   G +   R +FD++    
Sbjct: 375  VLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK 434

Query: 75   SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
             FL+N +M  YA+ G   +S+ +F  M +LG    + YT+  V+K    L   K    +H
Sbjct: 435  VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVG-NCYTFTCVLKCFAALGKVKECKRVH 493

Query: 135  GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
            G VL  GF  +T V N LIA Y  FG V++A  +FD + E  VVSWN++I+G   N ++ 
Sbjct: 494  GYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSG 553

Query: 195  EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
              L +F  ML  GVE D  ++VSVL A   +  + +GR +H         + +   N L+
Sbjct: 554  NGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLL 613

Query: 255  DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
            DMY KCG++N A  VF +M +  +V+WTS I  Y   G   +A+GLF  MQ +GVRP+  
Sbjct: 614  DMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIY 673

Query: 315  TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
            T+ S++ AC+    L +GR +H++ IK  +   + V  ALI+MYAKC  V+ +  VF++ 
Sbjct: 674  TVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKI 733

Query: 375  SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
              K  V WN ++ G   N L  +A+ELF  M  +  +P+D T+  +LPA A LA L +  
Sbjct: 734  PVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQF-KPDDITMACVLPACAGLAALDKGR 792

Query: 435  NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
             IH +++R G+ S + V+  L+D+Y+KCG L  A  +F  IP   KD++ W+V+IAGYGM
Sbjct: 793  EIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIP--KKDLISWTVMIAGYGM 850

Query: 495  HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
            HG G  A+S F EM  +G++P+E +F+  L+ACSH GLL+EG   FN M        + +
Sbjct: 851  HGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLE 910

Query: 555  HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
            HY C+VDLL R G L +AY  I +MP+KP   +WG LL  C IH +V+L E  A+ +FEL
Sbjct: 911  HYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFEL 970

Query: 615  EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            EP+N   YV+L+ +Y+   +W++ + +R  M ++G ++ P  S IEV
Sbjct: 971  EPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEV 1017



 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 184/608 (30%), Positives = 298/608 (49%), Gaps = 29/608 (4%)

Query: 39  IITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHD----- 93
           I TS P  TH  +S    Y   S+ R +F +   R+  L++TV    +    +H      
Sbjct: 283 IPTSSPYHTHKTTS---NYTKKSHNRFIFFKQPRRTCLLHSTVCVSPSFTNTTHSVTQNQ 339

Query: 94  --SLKMF--LGMLRLG--------EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
              +  F  +G LR           Y     +Y  V++ C +    + G  +H  ++  G
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNG 399

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
             +D  +G  L+ MY+N G++   RK+FD +    V  WN L+S Y K    +E++ +F 
Sbjct: 400 ISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFK 459

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
            M K GV  +C +   VL     L +++  + +H  V     G N A  N+L+  Y K G
Sbjct: 460 KMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFG 519

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
            V  A  +FD +SE DVV+W SMING  +NG   N L +F  M   GV  +  T+ S+L 
Sbjct: 520 GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLV 579

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
           A +++  L  GR+LH + +K     EV+    L+DMY+KC  +  + +VF +      V 
Sbjct: 580 AWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVS 639

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           W + +A  V  GL   A+ LF +M  + V P+  T+ S++ A A  + L +  ++H Y+I
Sbjct: 640 WTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVI 699

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           + G  S + V+  LI++Y+KCGS+E A  +FS+IP+  KDIV W+ +I GY  +     A
Sbjct: 700 KNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPV--KDIVSWNTMIGGYSQNSLPNEA 757

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC-IV 560
           + LF +M Q   +P+++T    L AC+    LD+G ++   +L          H  C +V
Sbjct: 758 LELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL--HVACALV 814

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH--GNVELGEVAAKWLFELEPEN 618
           D+  + G L  A  L   +P K   + W  ++    +H  GN  +       +  +EP+ 
Sbjct: 815 DMYAKCGLLVLAQLLFDMIPKKDLIS-WTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDE 873

Query: 619 PGNYVLLS 626
               V+L+
Sbjct: 874 SSFSVILN 881


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/675 (36%), Positives = 398/675 (58%), Gaps = 40/675 (5%)

Query: 24  AATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNVRI---LFDEMSERSSFLYN 79
            A +S  G KQ+H+ +I  G    T + ++L+  Y    +      +FDEM ER+   +N
Sbjct: 287 GALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWN 346

Query: 80  TVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLI 139
           +++   AQ G  +D+L +FL M   G Y  + +    ++ A   LA    G  LHG ++ 
Sbjct: 347 SIISAEAQFGHFNDALVLFLRMQESG-YKSNRFNLGSILMASAGLADIGKGRELHGHLVR 405

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
              + D  +G+ L+ MY   G V+ A +VF ++ E + VS+N L++GY +   A+EAL +
Sbjct: 406 NLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALEL 465

Query: 200 F-DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           + D   + G++PD  +  ++L  C   +    GR IH  +    + KNI     LV MY 
Sbjct: 466 YHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYS 525

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           +CG +N A+ +F+RM+ER+  +W SMI GY  NG+ + AL LF+ MQ  G++P+  ++ S
Sbjct: 526 ECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSS 585

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK- 377
           +LS+C SL   ++GR LH + ++  +E E I++  L+DMYAKC  +  +++V+ +T KK 
Sbjct: 586 MLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKD 645

Query: 378 ------------------------------KTVPWNAILAGCVHNGLARKAVELFRQMLV 407
                                          T  WN+ILAG  + GL +++   F +ML 
Sbjct: 646 VILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLE 705

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV-VEVSTGLIDIYSKCGSLE 466
             +E +  T+ +++   + L  L+    +H  +I+ GF++  V + T L+D+YSKCG++ 
Sbjct: 706 SDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAIT 765

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
            A  +F  +    K+IV W+ +I+GY  HG  + A+ L++EM + G+ PNEVTF + L A
Sbjct: 766 KARTVFDNM--NGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSA 823

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           CSH GL++EGL +F  M E++   ++A+HYTC+VDLLGRAGRL++A + +  MP++P  +
Sbjct: 824 CSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVS 883

Query: 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646
            WGALLGAC +H ++++G +AA+ LFEL+P+NPG YV++S +Y+A  RWK+ E++R +M 
Sbjct: 884 TWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMK 943

Query: 647 EKGLRKAPAHSLIEV 661
            KG++K P  S IE+
Sbjct: 944 MKGVKKDPGVSWIEI 958



 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 195/596 (32%), Positives = 308/596 (51%), Gaps = 33/596 (5%)

Query: 1   MNGPSHHTLPKTTHLVIK------------LVQQYAATKSIAGTKQLHAFIITSG-PLFT 47
            NGP     PK T +  K            L+Q    + S    K +H  +I++G     
Sbjct: 50  FNGPDS---PKPTSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDA 106

Query: 48  HLRSSLVRAYGH------VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGM 101
           +L + ++  Y        +   R LF+EM ER+   +NT++  YA+     + L+++  M
Sbjct: 107 YLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRM 166

Query: 102 LRLGEYNPDNYTYPIVIKACTDLAWRKLG--IALHGRVLITGFDMDTFVGNCLIAMYMNF 159
              G ++ D +T+P VIKAC  +A   +G    L   V+  G + + FVG  L+  Y  F
Sbjct: 167 RGSGNFS-DKFTFPSVIKAC--IAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARF 223

Query: 160 GEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVL 219
           G +  A    D +   SVV+WN +I+GY K    +EA  +FD MLK GV PD  +  S L
Sbjct: 224 GWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASAL 283

Query: 220 PACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
             CG L+  + G+ +H +L+A G  G      NAL+DMY KC        VFD M ER+ 
Sbjct: 284 RVCGALRSRDGGKQVHSKLIACGFKGDTFVG-NALIDMYAKCDDEESCLKVFDEMGERNQ 342

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           VTW S+I+  A  G   +AL LF  MQ  G + N   +GS+L A + L  + +GR LH  
Sbjct: 343 VTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGH 402

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
            ++  L  ++I+ +AL+DMY+KC +V+ + QVF    ++  V +NA+LAG V  G A +A
Sbjct: 403 LVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEA 462

Query: 399 VELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
           +EL+  M  E  ++P+  T  +LL   A   +  Q   IH +LIR      + V T L+ 
Sbjct: 463 LELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVH 522

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
           +YS+CG L  A +IF+ +   +++   W+ +I GY  +G  + A+ LFK+M  +G++P+ 
Sbjct: 523 MYSECGRLNYAKEIFNRMA--ERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDC 580

Query: 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
            + +S L +C       +G +L NF++ N            +VD+  + G +D A+
Sbjct: 581 FSLSSMLSSCVSLSDSQKGRELHNFIVRNTME-EEGILQVVLVDMYAKCGSMDYAW 635



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 157/552 (28%), Positives = 278/552 (50%), Gaps = 24/552 (4%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG---EVKAARKVFD 170
           Y  +I+ C D    + G ++H +++  G++ D ++   ++ +Y   G   ++  ARK+F+
Sbjct: 74  YSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFE 133

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
            M E ++ +WNT+I  Y +     E L ++  M  SG   D  +  SV+ AC  ++++  
Sbjct: 134 EMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGG 193

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
            R +   V    L  N+    ALVD Y + G +++A    D +    VVTW ++I GY  
Sbjct: 194 VRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVK 253

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
                 A G+F  M   GV P++ T  S L  C +L     G+ +H+  I    + +  V
Sbjct: 254 ILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFV 313

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
             ALIDMYAKC+  +   +VF    ++  V WN+I++     G    A+ LF +M     
Sbjct: 314 GNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGY 373

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           + N   L S+L A A LAD+ +   +H +L+R    S + + + L+D+YSKCG +E AH+
Sbjct: 374 KSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQ 433

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM-VQSGVQPNEVTFTSALHACSH 529
           +F  +   +++ V ++ ++AGY   G  E A+ L+ +M  + G+QP++ TFT+ L  C++
Sbjct: 434 VFRSLL--ERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCAN 491

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
               ++G  +   ++  + T +     T +V +    GRL+ A ++   M  +  ++ W 
Sbjct: 492 QRNDNQGRQIHAHLIRANITKNIIVE-TELVHMYSECGRLNYAKEIFNRMAERNAYS-WN 549

Query: 590 ALLGACVIHGNVELGEVA-AKWLF---ELEPENPGNYVLLSKLYSAV-----RRWKDAEN 640
           ++     I G  + GE   A  LF   +L    P  + L S L S V     ++ ++  N
Sbjct: 550 SM-----IEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHN 604

Query: 641 --VRDVMDEKGL 650
             VR+ M+E+G+
Sbjct: 605 FIVRNTMEEEGI 616



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 158/322 (49%), Gaps = 5/322 (1%)

Query: 7   HTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRIL 66
           +T+ +   L + LV  YA   S+    +++   I    +  ++  S     G  ++ + L
Sbjct: 609 NTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNL 668

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           FD+M +R++ L+N+++  YA  G   +S   FL ML   +   D  T   ++  C+ L  
Sbjct: 669 FDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLE-SDIEYDVLTMVTIVNLCSSLPA 727

Query: 127 RKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
            + G  LH  ++  GF +    +   L+ MY   G +  AR VFD M   ++VSWN +IS
Sbjct: 728 LEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMIS 787

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLG 244
           GY K+  +KEAL++++ M K G+ P+  + +++L AC +   +E G R+   +     + 
Sbjct: 788 GYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIE 847

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVR-NALGLFQ 302
                +  +VD+  + G + +A+   ++M  E +V TW +++    ++ D+    L   +
Sbjct: 848 AKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQR 907

Query: 303 LMQFEGVRPNSLTIGSLLSACS 324
           L + +   P    I S + A +
Sbjct: 908 LFELDPQNPGPYVIMSNIYAAA 929


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 246/664 (37%), Positives = 384/664 (57%), Gaps = 14/664 (2%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GH 59
           P  +T P        +++      S+A  + +H  I   G  L   + SSL++ Y   G 
Sbjct: 145 PDKYTFPY-------VIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGC 197

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           + + R LFD M  +   L+N ++  Y +NG   ++  +F+ M R  E NP++ T+  V+ 
Sbjct: 198 IHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRT-ETNPNSVTFACVLS 256

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
            C        G  LHG V+ +G +MD+ V N L+AMY   G +  AR++FD M +  +V+
Sbjct: 257 VCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVT 316

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WN +ISGY +N +  EA  +F  M+ + ++PD  +  S LP       +  G+ IH  + 
Sbjct: 317 WNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYII 376

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
              +  ++   +AL+D+Y KC  V  AR +FD+ +  D+V  T+MI+GY LNG   NAL 
Sbjct: 377 RNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALE 436

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           +F+ +  E +R NS+T+ S+L AC+ L  L  G+ LH   +K        V +A++DMYA
Sbjct: 437 IFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYA 496

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           KC  + L+ Q F   S K  V WN+++  C  NG   +A++LFRQM +   + +  ++++
Sbjct: 497 KCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISA 556

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
            L A A L  L     IH +++R  F S +   + LID+YSKCG+L+ A ++F    +++
Sbjct: 557 ALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDT--MEE 614

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
           K+ V W+ IIA YG HG  + +++LF  M+  G+QP+ VTF + + AC H G +DEG+  
Sbjct: 615 KNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHY 674

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           F  M E     +R +HY C+VDL GRAGRL+EA+ +I +MP  P   VWG LLGAC +HG
Sbjct: 675 FRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHG 734

Query: 600 NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           NVEL EVA++ LF+L+P+N G YVLLS +++   +W+    +R +M E+G++K P  S I
Sbjct: 735 NVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWI 794

Query: 660 EVRN 663
           +V N
Sbjct: 795 DVNN 798



 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 186/593 (31%), Positives = 312/593 (52%), Gaps = 13/593 (2%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAY---GHVSNVRILFDEMS 71
           ++ ++Q       ++  +Q HA ++ +G  +   L + L+  Y   G   + + +F ++ 
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
              S  +N +++ +   G    +L  +  ML  G   PD YT+P VIKAC  L    LG 
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTL-PDKYTFPYVIKACGGLNSVALGR 167

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H ++   GF++D FVG+ LI  Y   G +  AR +FD M     V WN +++GY KN 
Sbjct: 168 VVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNG 227

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
               A  VF  M ++   P+  +   VL  C     I  G  +H LV    L  +    N
Sbjct: 228 DWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVAN 287

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            L+ MY KCG + +AR +FD M + D+VTW  MI+GY  NG +  A  LF  M    ++P
Sbjct: 288 TLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKP 347

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +S+T  S L   S    L++G+ +H + I+  +  +V +++ALID+Y KC  V+++ ++F
Sbjct: 348 DSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIF 407

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
            + +    V   A+++G V NG+   A+E+FR +L E +  N  TL S+LPA A LA L 
Sbjct: 408 DQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALT 467

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               +H ++++ G      V + ++D+Y+KCG L+ AH+ F  I I DKD V W+ +I  
Sbjct: 468 LGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTF--IGISDKDAVCWNSMITS 525

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
              +G  E A+ LF++M  +G + + V+ ++AL AC++   L  G ++  FM+   +   
Sbjct: 526 CSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMM---RGAF 582

Query: 552 RADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           R+D +  + ++D+  + G LD A  +  TM  K     W +++ A   HG ++
Sbjct: 583 RSDLFAESALIDMYSKCGNLDLACRVFDTMEEK-NEVSWNSIIAAYGNHGRLK 634


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 242/635 (38%), Positives = 385/635 (60%), Gaps = 9/635 (1%)

Query: 34  QLHAFIITSGPL-FTHLRSSLVRAYGHVSNV---RILFDEMSERSSFL-YNTVMKMYAQN 88
           ++H   I  G +    + +S+V  Y   +++   R LFD M E+   + +N+++  Y+ N
Sbjct: 201 EVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSN 260

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G S ++L++F G ++     P+ YT+   ++AC D ++ K G+ +H  VL + + ++ FV
Sbjct: 261 GQSIEALRLF-GEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFV 319

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N LIAMY  FG++  A  +F  M +   +SWN+++SG+ +N    EAL  +  M  +G 
Sbjct: 320 ANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQ 379

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +PD  +V+S++ A         G  IH       L  ++   N+LVDMY K  S+     
Sbjct: 380 KPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDC 439

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +FD+M ++DVV+WT++I G+A NG    AL LF+ +Q EG+  + + I S+L ACS L  
Sbjct: 440 IFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKL 499

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           +   + +H++ I++ L  +++++  ++D+Y +C  V  + ++F     K  V W ++++ 
Sbjct: 500 ISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISC 558

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            VHNGLA +A+ELF  M    VEP+  +L S+L A A L+ L++   IH +LIR GF+  
Sbjct: 559 YVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLE 618

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             +++ L+D+Y++CG+LE +  +F+   I++KD+V+W+ +I  YGMHG G  A+ LF+ M
Sbjct: 619 GSLASTLVDMYARCGTLEKSRNVFN--FIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRM 676

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
               + P+ + F + L+ACSH GL++EG      M   +Q     +HY C+VDLLGRA  
Sbjct: 677 EDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANH 736

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           L+EAY  ++ M ++PT  VW ALLGAC IH N ELGE+AA+ L E++PENPGNYVL+S +
Sbjct: 737 LEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNV 796

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           YSA RRWKD E VR  M   GL+K P  S IEV N
Sbjct: 797 YSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGN 831



 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 193/638 (30%), Positives = 333/638 (52%), Gaps = 26/638 (4%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH--LRSSLVRAYGHVS 61
           PS  +L +    V++L     + K+++  +Q+HA +ITS  LF    L + LV  YG   
Sbjct: 72  PSQFSLDEAYSSVLELC---GSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCG 128

Query: 62  ---NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
              +   LFD M  ++ F +N ++  Y  NG    SL+++  M R+     D  T+P ++
Sbjct: 129 CLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREM-RVSGIPLDACTFPCIL 187

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE-HSV 177
           KAC  L  R+ G  +HG  +  G+    FV N ++ MY    ++  AR++FD M E   V
Sbjct: 188 KACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDV 247

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSWN++IS Y  N  + EAL +F  M K+ + P+  + V+ L AC     I+ G  IH  
Sbjct: 248 VSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHAT 307

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V       N+   NAL+ MY + G + EA  +F  M + D ++W SM++G+  NG    A
Sbjct: 308 VLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEA 367

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L  +  M+  G +P+ + + S+++A +       G  +HA+ +K  L+ ++ V  +L+DM
Sbjct: 368 LQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDM 427

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAK   +K    +F +   K  V W  I+AG   NG   +A+ELFR++ +E ++ +   +
Sbjct: 428 YAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMI 487

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +S+L A + L  +     IH Y+IR G LS + +  G++D+Y +CG+++ A ++F  I  
Sbjct: 488 SSILLACSGLKLISSVKEIHSYIIRKG-LSDLVLQNGIVDVYGECGNVDYAARMFELIEF 546

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
             KD+V W+ +I+ Y  +G    A+ LF  M ++GV+P+ ++  S L A +    L +G 
Sbjct: 547 --KDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGK 604

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA---YDLIRTMPLKPTHAVWGALLGA 594
           ++  F++        +   T +VD+  R G L+++   ++ IR   L     +W +++ A
Sbjct: 605 EIHGFLIRKGFVLEGSLAST-LVDMYARCGTLEKSRNVFNFIRNKDL----VLWTSMINA 659

Query: 595 CVIHGNVELGEVAAKWLFELEPEN--PGNYVLLSKLYS 630
             +HG    G  A      +E E+  P +   ++ LY+
Sbjct: 660 YGMHG---CGRAAIDLFRRMEDESIAPDHIAFVAVLYA 694


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/616 (38%), Positives = 369/616 (59%), Gaps = 6/616 (0%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           SSL++ Y   GH+S+ + LFD + ++ S L+N ++  Y +NG S +++K+FL M R  E 
Sbjct: 97  SSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEM-RHSEI 155

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            P++ T+  V+  C   A   LG  LHG  +  G ++D+ V N L+AMY     ++AARK
Sbjct: 156 KPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARK 215

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +FD   +  +VSWN +ISGY +N    EA  +F  M+ +G++PD  +  S LP    L  
Sbjct: 216 LFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLS 275

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           ++  + IH  +    +  ++   +AL+D+Y KC  V  A+ +  + S  D V  T+MI+G
Sbjct: 276 LKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISG 335

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y LNG  + AL  F+ +  E ++P S+T  S+  A + L  L  G+ LH   IK  L+ +
Sbjct: 336 YVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEK 395

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
             V +A++DMYAKC  + L+ +VF R ++K  + WN+++  C  NG   +A+ LFRQM +
Sbjct: 396 CHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGM 455

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           E    +  +++  L A A L  L     IH  +I+    S +   + LID+Y+KCG+L  
Sbjct: 456 EGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNF 515

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           + ++F    +++++ V W+ II+ YG HG  +  ++LF EM+++G+QP+ VTF   + AC
Sbjct: 516 SRRVFDR--MQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISAC 573

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
            H G +DEG+  ++ M E +   +R +HY C+ D+ GRAGRLDEA++ I +MP  P   V
Sbjct: 574 GHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGV 633

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           WG LLGAC IHGNVEL EVA+K LF+L+P N G YVLL+ + +   +W+    VR +M E
Sbjct: 634 WGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKE 693

Query: 648 KGLRKAPAHSLIEVRN 663
           +G+RK P +S IEV N
Sbjct: 694 RGVRKVPGYSWIEVNN 709



 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 158/547 (28%), Positives = 292/547 (53%), Gaps = 9/547 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G + + + LF  +    +  +N +++ +   G  + +L  +L ML  G  +PD YT+P V
Sbjct: 6   GSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAG-VSPDKYTFPYV 64

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +KAC  L   K+G  +H  V + G   D FVG+ LI +Y   G +  A+ +FD + +   
Sbjct: 65  VKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDS 124

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V WN +++GY KN  +  A+ +F  M  S ++P+  +   VL  C     +++G  +H +
Sbjct: 125 VLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGI 184

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                L  +    N L+ MY KC  +  AR +FD   + D+V+W  +I+GY  NG +  A
Sbjct: 185 AVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEA 244

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
             LF+ M   G++P+S+T  S L   + L  LK  + +H + I+  +  +V +++ALID+
Sbjct: 245 EHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDI 304

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y KC  V+++ ++  ++S   TV    +++G V NG  ++A+E FR ++ E ++P   T 
Sbjct: 305 YFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTF 364

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +S+ PA+A LA L     +H  +I+        V + ++D+Y+KCG L+ A ++F+   I
Sbjct: 365 SSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNR--I 422

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            +KD + W+ +I     +G    A++LF++M   G + + V+ + AL AC++   L  G 
Sbjct: 423 TEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGK 482

Query: 538 DLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           ++   M++      R+D Y  + ++D+  + G L+ +  +   M  +     W +++ A 
Sbjct: 483 EIHGLMIKGPL---RSDLYAESSLIDMYAKCGNLNFSRRVFDRMQER-NEVSWNSIISAY 538

Query: 596 VIHGNVE 602
             HG+++
Sbjct: 539 GNHGDLK 545



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 140/447 (31%), Positives = 239/447 (53%), Gaps = 8/447 (1%)

Query: 155 MYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
           MY+  G +K A+ +F  +      +WN +I G+        AL+ +  ML +GV PD  +
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
              V+ AC  LK ++MG+++HE V    L +++   ++L+ +Y + G +++A+ +FD + 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
           ++D V W  M+NGY  NGD  NA+ +F  M+   ++PNS+T   +LS C+S   L  G  
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 335 LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
           LH   +   LE +  V   L+ MY+KC  ++ + ++F  + +   V WN I++G V NGL
Sbjct: 181 LHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGL 240

Query: 395 ARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTG 454
             +A  LFR M+   ++P+  T  S LP    L  L+    IH Y+IR+  +  V + + 
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSA 300

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           LIDIY KC  +E A KI  +      D VV + +I+GY ++G  + A+  F+ +VQ  ++
Sbjct: 301 LIDIYFKCRDVEMAQKILCQ--SSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMK 358

Query: 515 PNEVTFTSALHACSHGGLLDEGLDLFNFMLENH--QTCSRADHYTCIVDLLGRAGRLDEA 572
           P  VTF+S   A +    L+ G +L   +++    + C      + I+D+  + GRLD A
Sbjct: 359 PTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVG---SAILDMYAKCGRLDLA 415

Query: 573 YDLIRTMPLKPTHAVWGALLGACVIHG 599
             +   +  K     W +++ +C  +G
Sbjct: 416 CRVFNRITEKDA-ICWNSMITSCSQNG 441


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/635 (37%), Positives = 385/635 (60%), Gaps = 9/635 (1%)

Query: 34  QLHAFIITSGPL-FTHLRSSLVRAYGHVSNV---RILFDEMSERSSFL-YNTVMKMYAQN 88
           ++H   I  G +    + +S+V  Y   +++   R LFD M E+   + +N+++  Y+ N
Sbjct: 237 EVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSN 296

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G S ++L++F G ++     P+ YT+   ++AC D ++ K G+ +H  VL + + ++ FV
Sbjct: 297 GQSIEALRLF-GEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFV 355

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N LIAMY  FG++  A  +F  M +   +SWN+++SG+ +N    EAL  +  M  +G 
Sbjct: 356 ANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQ 415

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +PD  +V+S++ A         G  IH       L  ++   N+LVDMY K  S+     
Sbjct: 416 KPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDC 475

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +FD+M ++DVV+WT++I G+A NG    AL LF+ +Q EG+  + + I S+L ACS L  
Sbjct: 476 IFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKL 535

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           +   + +H++ I++ L  +++++  ++D+Y +C  V  + ++F     K  V W ++++ 
Sbjct: 536 ISSVKEIHSYIIRKGLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISC 594

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            VHNGLA +A+ELF  M    VEP+  +L S+L A A L+ L++   IH +LIR GF+  
Sbjct: 595 YVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLE 654

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             +++ L+D+Y++CG+LE +  +F+   I++KD+V+W+ +I  YGMHG G  A+ LF+ M
Sbjct: 655 GSLASTLVDMYARCGTLEKSRNVFN--FIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRM 712

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
               + P+ + F + L+ACSH GL++EG      M   +Q     +HY C+VDLLGRA  
Sbjct: 713 EDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANH 772

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           L+EAY  ++ M ++PT  VW ALLGAC IH N ELGE+AA+ L E++PENPGNYVL+S +
Sbjct: 773 LEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNV 832

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           Y+A RRWKD E VR  M   GL+K P  S IEV N
Sbjct: 833 YAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGN 867



 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 193/638 (30%), Positives = 333/638 (52%), Gaps = 26/638 (4%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH--LRSSLVRAYGHVS 61
           PS  +L +    V++L     + K+++  +Q+HA +ITS  LF    L + LV  YG   
Sbjct: 108 PSQFSLDEAYSSVLELC---GSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCG 164

Query: 62  ---NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
              +   LFD M  ++ F +N ++  Y  NG    SL+++  M R+     D  T+P ++
Sbjct: 165 CLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREM-RVSGIPLDACTFPCIL 223

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE-HSV 177
           KAC  L  R+ G  +HG  +  G+    FV N ++ MY    ++  AR++FD M E   V
Sbjct: 224 KACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDV 283

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSWN++IS Y  N  + EAL +F  M K+ + P+  + V+ L AC     I+ G  IH  
Sbjct: 284 VSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHAT 343

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V       N+   NAL+ MY + G + EA  +F  M + D ++W SM++G+  NG    A
Sbjct: 344 VLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEA 403

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L  +  M+  G +P+ + + S+++A +       G  +HA+ +K  L+ ++ V  +L+DM
Sbjct: 404 LQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDM 463

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAK   +K    +F +   K  V W  I+AG   NG   +A+ELFR++ +E ++ +   +
Sbjct: 464 YAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMI 523

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +S+L A + L  +     IH Y+IR G LS + +  G++D+Y +CG+++ A ++F  I  
Sbjct: 524 SSILLACSGLKLISSVKEIHSYIIRKG-LSDLVLQNGIVDVYGECGNVDYAARMFELIEF 582

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
             KD+V W+ +I+ Y  +G    A+ LF  M ++GV+P+ ++  S L A +    L +G 
Sbjct: 583 --KDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGK 640

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA---YDLIRTMPLKPTHAVWGALLGA 594
           ++  F++        +   T +VD+  R G L+++   ++ IR   L     +W +++ A
Sbjct: 641 EIHGFLIRKGFVLEGSLAST-LVDMYARCGTLEKSRNVFNFIRNKDL----VLWTSMINA 695

Query: 595 CVIHGNVELGEVAAKWLFELEPEN--PGNYVLLSKLYS 630
             +HG    G  A      +E E+  P +   ++ LY+
Sbjct: 696 YGMHG---CGRAAIDLFRRMEDESIAPDHIAFVAVLYA 730


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/639 (37%), Positives = 384/639 (60%), Gaps = 9/639 (1%)

Query: 34  QLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFL-YNTVMKMYAQN 88
           ++H   I  G   F  + +SLV  Y   +++   R LFD M  R+  + +N+++  Y+ N
Sbjct: 79  EIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGN 138

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   ++L +F  ML+ G    + YT+   ++AC D ++ KLG+ +H  +L +G  +D +V
Sbjct: 139 GMCTEALCLFSEMLKAGVVT-NTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYV 197

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+AMY+ FG++  A  +F  +    +V+WN++++G+ +N    EAL  F  +  + +
Sbjct: 198 ANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADL 257

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +PD  S++S++ A G L  +  G+ IH          NI   N L+DMY KC  ++    
Sbjct: 258 KPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGR 317

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
            FD M+ +D+++WT+   GYA N     AL L + +Q EG+  ++  IGS+L AC  L  
Sbjct: 318 AFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNC 377

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L + + +H +TI+  L  + +++  +ID+Y +C ++  + ++F     K  V W ++++ 
Sbjct: 378 LGKIKEIHGYTIRGGLS-DPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISC 436

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            VHNGLA KA+E+F  M    +EP+  TL S+L A   L+ L++   IH ++IR GF+  
Sbjct: 437 YVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILE 496

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             +S  L+D+Y++CGS+E A+KIF+    K++++++W+ +I+ YGMHG+GE AV LF  M
Sbjct: 497 GSISNTLVDMYARCGSVEDAYKIFT--CTKNRNLILWTAMISAYGMHGYGEAAVELFMRM 554

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
               + P+ +TF + L+ACSH GL++EG      M   +Q     +HYTC+VDLLGR   
Sbjct: 555 KDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNC 614

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           L+EAY ++++M  +PT  VW ALLGAC IH N E+GEVAA+ L EL+ +NPGNYVL+S +
Sbjct: 615 LEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNV 674

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           ++A  RWKD E VR  M   GL K P  S IEV N + A
Sbjct: 675 FAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHA 713



 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 192/578 (33%), Positives = 309/578 (53%), Gaps = 14/578 (2%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V +  ++FD+MSERS F +N +M  Y  NG +  +L+M+  M  LG  + D+YT+P++
Sbjct: 6   GSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLG-VSFDSYTFPVL 64

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW-EHS 176
           +KAC  +     G  +HG  +  G D   FV N L+A+Y    ++  ARK+FD M+  + 
Sbjct: 65  LKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRND 124

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH- 235
           VVSWN++IS Y  N    EAL +F  MLK+GV  +  +  + L AC     I++G  IH 
Sbjct: 125 VVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHA 184

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
            ++  GR+  ++   NALV MYV+ G + EA ++F  +  +D+VTW SM+ G+  NG   
Sbjct: 185 AILKSGRV-LDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYS 243

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            AL  F  +Q   ++P+ ++I S++ A   L YL  G+ +HA+ IK   +  ++V   LI
Sbjct: 244 EALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLI 303

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           DMYAKC  +    + F   + K  + W    AG   N    +A+EL RQ+ +E ++ +  
Sbjct: 304 DMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDAT 363

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
            + S+L A   L  L +   IH Y IR G    V  +T +ID+Y +CG ++ A +IF  I
Sbjct: 364 MIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNT-IIDVYGECGIIDYAVRIFESI 422

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
               KD+V W+ +I+ Y  +G    A+ +F  M ++G++P+ VT  S L A      L +
Sbjct: 423 EC--KDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKK 480

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           G ++  F++        +   T +VD+  R G +++AY  I T        +W A++ A 
Sbjct: 481 GKEIHGFIIRKGFILEGSISNT-LVDMYARCGSVEDAYK-IFTCTKNRNLILWTAMISAY 538

Query: 596 VIHGNVELGEVAAKWLFELEPEN--PGNYVLLSKLYSA 631
            +HG    GE A +    ++ E   P +   L+ LY+ 
Sbjct: 539 GMHG---YGEAAVELFMRMKDEKIIPDHITFLALLYAC 573



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 148/487 (30%), Positives = 229/487 (47%), Gaps = 24/487 (4%)

Query: 155 MYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
           MY   G V  A  +FD M E S+ +WN ++ GY  N  A  AL ++  M   GV  D  +
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
              +L ACG ++++  G  IH L         +   N+LV +Y KC  +N AR +FDRM 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 275 ER-DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
            R DVV+W S+I+ Y+ NG    AL LF  M   GV  N+ T  + L AC    ++K G 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            +HA  +K     +V V  AL+ MY +   +  +  +F     K  V WN++L G + NG
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
           L  +A+E F  +    ++P+  ++ S++ A   L  L     IH Y I+ GF S + V  
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGN 300

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            LID+Y+KC  +    + F    +  KD++ W+   AGY  +     A+ L +++   G+
Sbjct: 301 TLIDMYAKCCCMSYGGRAFD--LMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGM 358

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD-----HYTCIVDLLGRAGR 568
             +     S L AC        GL+    + E H    R           I+D+ G  G 
Sbjct: 359 DVDATMIGSILLAC-------RGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGI 411

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIH---GNVELGEVAAKWLFELEPENPGNYVLL 625
           +D A  +  ++  K     W +++ +C +H    N  L   ++     LEP+    YV L
Sbjct: 412 IDYAVRIFESIECKDV-VSWTSMI-SCYVHNGLANKALEVFSSMKETGLEPD----YVTL 465

Query: 626 SKLYSAV 632
             + SAV
Sbjct: 466 VSILSAV 472


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 256/636 (40%), Positives = 370/636 (58%), Gaps = 14/636 (2%)

Query: 33  KQLHAFIITSGPLFT-HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           K LHA ++ +G + +  + + LV  Y   G VS  R  FD++ ++  + +N+++  Y  N
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHN 195

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G  H+++  F  +L + E  PD YT+P V+KAC  L     G  +H      GF  + FV
Sbjct: 196 GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRKIHCWAFKLGFQWNVFV 252

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
              LI MY  FG    AR +FD M    + SWN +ISG  +N  A +AL V D M   G+
Sbjct: 253 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 312

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           + +  +VVS+LP C  L +I    +IH  V    L  ++   NAL++MY K G++ +AR 
Sbjct: 313 KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARK 372

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
            F +M   DVV+W S+I  Y  N D   A G F  MQ  G +P+ LT+ SL S  +    
Sbjct: 373 AFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRD 432

Query: 329 LKRGRSLHAWTIKQN-LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            K  RS+H + +++  L  +V++  A++DMYAK  L+  + +VF     K  + WN ++ 
Sbjct: 433 CKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLIT 492

Query: 388 GCVHNGLARKAVELFRQMLVEVVE--PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           G   NGLA +A+E+++ M+ E  E  PN  T  S+LPAYA +  LQQ M IH  +I+   
Sbjct: 493 GYAQNGLASEAIEVYK-MMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNL 551

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
              V V+T LID+Y KCG L  A  +F ++P   +  V W+ II+ +G+HGH E  + LF
Sbjct: 552 HLDVFVATCLIDVYGKCGRLVDAMSLFYQVP--QESSVTWNAIISCHGIHGHAEKTLKLF 609

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
            EM+  GV+P+ VTF S L ACSH G ++EG   F  M E +       HY C+VDLLGR
Sbjct: 610 GEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGR 668

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           AG L+ AYD I+ MPL+P  ++WGALLGAC IHGN+ELG+ A+  LFE++ +N G YVLL
Sbjct: 669 AGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLL 728

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           S +Y+ V +W+  + VR +  E+GL+K P  S IEV
Sbjct: 729 SNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEV 764


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/638 (38%), Positives = 377/638 (59%), Gaps = 10/638 (1%)

Query: 33  KQLHAFI---ITSGPLFTHLRS----SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMY 85
           K+LH FI   I +G    HL      SL   +G +     +F  + ++   LY+T++K Y
Sbjct: 91  KELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGY 150

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
           A+N +  D++  F  M R     P  Y +  ++K C D A  + G  +H ++++ GF  +
Sbjct: 151 ARNSSLDDAVSFFCRM-RYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASN 209

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
            F    ++ MY     V+ A K+FD M E  +V WNT+ISGY +N + K AL +   M +
Sbjct: 210 VFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQE 269

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
            G  PD  ++VS+LPA   +  + +GR IH           +    ALVDMY KCGSV  
Sbjct: 270 EGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGT 329

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           ARL+FDRM+ + VV+W SMI+GY  NGD   A+ +FQ M  E V   ++T+   L AC+ 
Sbjct: 330 ARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACAD 389

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           L  +++GR +H    +  L  +V V  +LI MY+KC  V ++ ++F     K  V WNA+
Sbjct: 390 LGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAM 449

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           + G   NG   +A++ F +M ++ ++P+  T+ S++PA A L+ L QA  IH  +IR   
Sbjct: 450 ILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCL 509

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
              V V+T L+D+Y+KCG++ +A K+F  +   ++ +  W+ +I GYG HG G+ A+ LF
Sbjct: 510 DKNVFVATALVDMYAKCGAVHTARKLFDMM--DERHVTTWNAMIDGYGTHGLGKAALELF 567

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
           ++M +  ++PNEVTF   L ACSH GL++EG   F  M +++      DHY  +VDLLGR
Sbjct: 568 EKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGR 627

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           A RL+EA+D I+ MP++P  +V+GA+LGAC IH NVELGE AA  +F+L+P++ G +VLL
Sbjct: 628 ANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLL 687

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           + +Y+    W     VR  M++KG++K P  S++E++N
Sbjct: 688 ANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQN 725



 Score =  244 bits (624), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 159/511 (31%), Positives = 266/511 (52%), Gaps = 18/511 (3%)

Query: 112 YTYP--IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           Y +P  I+++ CT +      I L   ++  G   +      L++++  FG +  A +VF
Sbjct: 76  YKHPSAILLELCTSMKELHQFIPL---IIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVF 132

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
             + +     ++T++ GY +N+   +A+  F  M   GV P   +   +L  CG   ++ 
Sbjct: 133 QPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLR 192

Query: 230 MGRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
            G+ IH +L+  G    N+ A   +V+MY KC  V EA  +FDRM ERD+V W ++I+GY
Sbjct: 193 KGKEIHCQLIVNG-FASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGY 251

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
           A NG  + AL L   MQ EG RP+S+TI S+L A + +  L+ GRS+H ++++   E  V
Sbjct: 252 AQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFV 311

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            V TAL+DMY+KC  V  +  +F R + K  V WN+++ G V NG    A+E+F++M+ E
Sbjct: 312 NVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDE 371

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            VE  + T+   L A A L D++Q   +H  L +    S V V   LI +YSKC  ++ A
Sbjct: 372 QVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIA 431

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            +IF    ++ K +V W+ +I GY  +G    A+  F +M    ++P+  T  S + A +
Sbjct: 432 AEIFEN--LQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALA 489

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
              +L +   +   ++   +TC   + +  T +VD+  + G +  A  L   M  +    
Sbjct: 490 ELSVLPQAKWIHGLVI---RTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHV-T 545

Query: 587 VWGALLGACVIHGNVELGEVAAKWLFELEPE 617
            W A++     HG   LG+ A +   +++ E
Sbjct: 546 TWNAMIDGYGTHG---LGKAALELFEKMKKE 573


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/616 (38%), Positives = 368/616 (59%), Gaps = 6/616 (0%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           SSL++ Y   GH+S+ + LFD + ++ S L+N ++  Y +NG S +++K+FL M R  E 
Sbjct: 97  SSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEM-RHSEI 155

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            P++ T+  V+  C   A   LG  LHG  +  G ++D+ V N L+AMY     ++AARK
Sbjct: 156 KPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARK 215

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +FD + +  +VSWN +ISGY +N    EA  +F  M+ +G++PD  +  S LP    L  
Sbjct: 216 LFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLS 275

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           ++  + IH  +    +  ++   +AL+D+Y KC  V  A+    + S  D V  T+MI+G
Sbjct: 276 LKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISG 335

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y LNG  + AL  F+ +  E ++P S+T  S+  A + L  L  G+ LH   IK  L+ +
Sbjct: 336 YVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEK 395

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
             V +A++DMYAKC  + L+ +VF R ++K  + WN+++  C  NG   +A+ LFRQM +
Sbjct: 396 CHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGM 455

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           E    +  +++  L A A L  L     IH  +I+    S +   + LID+Y+KCG+L  
Sbjct: 456 EGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNF 515

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           + ++F  +  ++K+ V W+ II+ YG HG  +  ++LF EM+++G+QP+ VTF   + AC
Sbjct: 516 SRRVFDRM--QEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISAC 573

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
            H G +DEG+  ++ M E +   +R +HY C+ D+ GRAGRL EA++ I +MP  P   V
Sbjct: 574 GHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGV 633

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           WG LLGAC IHGNVEL EVA+K LF+L+P N G YVLL+ + +   +W+    VR +M E
Sbjct: 634 WGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKE 693

Query: 648 KGLRKAPAHSLIEVRN 663
           +G+RK P +S IEV N
Sbjct: 694 RGVRKVPGYSWIEVNN 709



 Score =  275 bits (702), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 160/547 (29%), Positives = 293/547 (53%), Gaps = 9/547 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G + + + LF  +    +  +N +++ +   G  + +L  +L ML  G  +PD YT+P V
Sbjct: 6   GSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAG-VSPDKYTFPYV 64

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +KAC  L   K+G  +H  V + G   D FVG+ LI +Y   G +  A+ +FD + +   
Sbjct: 65  VKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDS 124

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V WN +++GY KN  +  A+ +F  M  S ++P+  +   VL  C     +++G  +H +
Sbjct: 125 VLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGI 184

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
             G  L  +    N L+ MY KC  +  AR +FD + + D+V+W  +I+GY  NG +  A
Sbjct: 185 AVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEA 244

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
             LF+ M   G++P+S+T  S L   + L  LK  + +H + I+  +  +V +++ALID+
Sbjct: 245 EHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDI 304

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y KC  V+++ +   ++S   TV    +++G V NG  ++A+E FR ++ E ++P   T 
Sbjct: 305 YFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTF 364

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +S+ PA+A LA L     +H  +I+        V + ++D+Y+KCG L+ A ++F+   I
Sbjct: 365 SSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNR--I 422

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            +KD + W+ +I     +G    A++LF++M   G + + V+ + AL AC++   L  G 
Sbjct: 423 TEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGK 482

Query: 538 DLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           ++   M++      R+D Y  + ++D+  + G L+ +  +   M  K     W +++ A 
Sbjct: 483 EIHGLMIKGPL---RSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEK-NEVSWNSIISAY 538

Query: 596 VIHGNVE 602
             HG+++
Sbjct: 539 GNHGDLK 545



 Score =  236 bits (601), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 139/447 (31%), Positives = 237/447 (53%), Gaps = 8/447 (1%)

Query: 155 MYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
           MY+  G +K A+ +F  +      +WN +I G+        AL+ +  ML +GV PD  +
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
              V+ AC  LK ++MG+++HE V    L +++   ++L+ +Y + G +++A+ +FD + 
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
           ++D V W  M+NGY  NGD  NA+ +F  M+   ++PNS+T   +LS C+S   L  G  
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ 180

Query: 335 LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
           LH   +   LE +  V   L+ MY+KC  ++ + ++F    +   V WN I++G V NGL
Sbjct: 181 LHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGL 240

Query: 395 ARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTG 454
             +A  LFR M+   ++P+  T  S LP    L  L+    IH Y+IR+  +  V + + 
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSA 300

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           LIDIY KC  +E A K   +      D VV + +I+GY ++G  + A+  F+ +VQ  ++
Sbjct: 301 LIDIYFKCRDVEMAQKNLCQ--SSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMK 358

Query: 515 PNEVTFTSALHACSHGGLLDEGLDLFNFMLENH--QTCSRADHYTCIVDLLGRAGRLDEA 572
           P  VTF+S   A +    L+ G +L   +++    + C      + I+D+  + GRLD A
Sbjct: 359 PTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVG---SAILDMYAKCGRLDLA 415

Query: 573 YDLIRTMPLKPTHAVWGALLGACVIHG 599
             +   +  K     W +++ +C  +G
Sbjct: 416 CRVFNRITEKDA-ICWNSMITSCSQNG 441


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/579 (39%), Positives = 352/579 (60%), Gaps = 3/579 (0%)

Query: 85  YAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDM 144
           +A+ G   +    F  ++R G   PDNYT P VI+AC DL   ++G  +H  V   G D+
Sbjct: 5   FAKVGDYINCFGTFRELIRCGA-RPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL 63

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           D FV   L+ MY+   E++ AR +FD M E  +V+W  +I GY +   A E+LV+F+ M 
Sbjct: 64  DHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMR 123

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
           + GV PD  ++V+V+ AC  L  +   R+I + +   +   ++    A++DMY KCG V 
Sbjct: 124 EEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVE 183

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
            AR +FDRM E++V++W++MI  Y  +G  R AL LF++M   G+ P+ +T+ SLL ACS
Sbjct: 184 SAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACS 243

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
            L  L+ GR +H    K  L+ +  V  AL+DMY KC  ++ +  +F +  ++  V W  
Sbjct: 244 DLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTV 303

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           ++ G    G A +++ LF +M  E V P+   + +++ A A L  + +A  I  Y+ R  
Sbjct: 304 MIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKK 363

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
           F   V + T +ID+++KCG +ESA +IF    +++K+++ WS +IA YG HG G  A+ L
Sbjct: 364 FQLDVILGTAMIDMHAKCGCVESAREIFDR--MEEKNVISWSAMIAAYGYHGQGRKALDL 421

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           F  M++SG+ PN++T  S L+ACSH GL++EGL  F+ M E++   +   HYTC+VDLLG
Sbjct: 422 FPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLG 481

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
           RAGRLDEA  LI +M ++    +WGA LGAC  H +V L E AA  L EL+P+NPG+Y+L
Sbjct: 482 RAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYIL 541

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           LS +Y+   RW+D    RD+M ++ L+K P  + IEV N
Sbjct: 542 LSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDN 580



 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 158/497 (31%), Positives = 268/497 (53%), Gaps = 14/497 (2%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLR-SSLVRAY---GH 59
           P ++TLP     VI+  +     K++   + +H  +   G    H   ++LV  Y     
Sbjct: 28  PDNYTLP----FVIRACRD---LKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCRE 80

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           + + R LFD+M ER    +  ++  YA+ G +++SL +F  M   G   PD      V+ 
Sbjct: 81  IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEG-VVPDKVAMVTVVF 139

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           AC  L        +   +    F +D  +G  +I MY   G V++AR++FD M E +V+S
Sbjct: 140 ACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVIS 199

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           W+ +I+ Y  +   ++AL +F  ML SG+ PD  ++ S+L AC  LK ++MGR+IH +V 
Sbjct: 200 WSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVY 259

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
              L  +     ALVDMY KC  + +AR +FD+M ERD+VTWT MI GYA  G+   +L 
Sbjct: 260 KFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLV 319

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           LF  M+ EGV P+ + + +++ AC+ L  + + R++  +  ++  + +VI+ TA+IDM+A
Sbjct: 320 LFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHA 379

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           KC  V+ + ++F R  +K  + W+A++A   ++G  RKA++LF  ML   + PN  TL S
Sbjct: 380 KCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVS 439

Query: 420 LLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           LL A +    +++ +     +   Y   + V+  T ++D+  + G L+ A K+   + + 
Sbjct: 440 LLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTV- 498

Query: 479 DKDIVVWSVIIAGYGMH 495
           +KD  +W   +     H
Sbjct: 499 EKDEGLWGAFLGACRTH 515



 Score =  245 bits (625), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 136/418 (32%), Positives = 235/418 (56%), Gaps = 4/418 (0%)

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           ++ G+ K          F  +++ G  PD  ++  V+ AC  LK ++MGR+IH +V    
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
           L  +     ALVDMYVKC  + +AR +FD+M ERD+VTWT MI GYA  G    +L LF+
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            M+ EGV P+ + + +++ AC+ L  + + R +  +  ++  + +VI+ TA+IDMYAKC 
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCG 180

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            V+ + ++F R  +K  + W+A++A   ++G  RKA++LFR ML   + P+  TL SLL 
Sbjct: 181 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLY 240

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A + L +LQ    IH  + ++G      V   L+D+Y KC  +E A  +F ++P  ++D+
Sbjct: 241 ACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMP--ERDL 298

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
           V W+V+I GY   G+   ++ LF +M + GV P++V   + + AC+  G + +   + ++
Sbjct: 299 VTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDY 358

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
            ++  +        T ++D+  + G ++ A ++   M  K   + W A++ A   HG 
Sbjct: 359 -IQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVIS-WSAMIAAYGYHGQ 414


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/606 (37%), Positives = 368/606 (60%), Gaps = 3/606 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V++VR LF+++S+   FL+N +++ ++ NG    S+ ++  + +     PDN+TY   
Sbjct: 60  GAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFA 119

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           I A + L   ++G+ LH   ++ G   + FVG+ ++ +Y  F   + ARKVFD M E   
Sbjct: 120 ISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDT 179

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V WNT+ISG+ +N+Y ++++ VF  ML  G+  D  ++ +VL A   L+E  +G  I  L
Sbjct: 180 VLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCL 239

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
            +   L  ++     L+ +Y KCG   + R++FD++ + D++++ +MI+GY  N +  +A
Sbjct: 240 ASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESA 299

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + LF+ +   G R NS T+  L+       +L+  R +   ++K  +  +  V TAL  +
Sbjct: 300 VTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTV 359

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y + N V+ + Q+F  + +K    WNA+++G   NGL  +A+ LF++M+ + + PN  T+
Sbjct: 360 YCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTV 418

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            S+L A A L  L     +H  +      S V VST L+D+Y+KCGS+  A ++F    +
Sbjct: 419 TSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFD--LM 476

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            DK++V W+ +I GYG+HGHG+ A+ LF EM+QSG+ P  VTF S L+ACSH GL+ EG 
Sbjct: 477 VDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGN 536

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
           ++F+ M  N+     ++HY C+VD+LGRAG+L  A + I  MPL+P  AVWGALLGAC+I
Sbjct: 537 EIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMI 596

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           H N E+  VA+K LF+L+PEN G YVLLS +YS  R +  A +VR V+ ++ L K P  +
Sbjct: 597 HKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCT 656

Query: 658 LIEVRN 663
           LIE+ +
Sbjct: 657 LIEIDD 662



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 167/342 (48%), Gaps = 6/342 (1%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           SL    G     RILFD++ +     YN ++  Y  N  +  ++ +F  +L  G+   ++
Sbjct: 257 SLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQ-RVNS 315

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T   +I         +L   +    L  G  +   V   L  +Y    EV+ AR++FD 
Sbjct: 316 STLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDE 375

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
             E S+ SWN +ISGY +N     A+ +F  M+   + P+  +V S+L AC  L  + +G
Sbjct: 376 SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIG 434

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           + +H L+   RL  N+    ALVDMY KCGS+ EAR +FD M +++VVTW +MI GY L+
Sbjct: 435 KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLH 494

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G  + AL LF  M   G+ P  +T  S+L ACS    +  G  +   ++  N   + + E
Sbjct: 495 GHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIF-HSMANNYGFQPMSE 553

Query: 352 --TALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCV 390
               ++D+  +   +  + +   R   +     W A+L  C+
Sbjct: 554 HYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACM 595


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/619 (39%), Positives = 361/619 (58%), Gaps = 3/619 (0%)

Query: 45  LFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL 104
           LF     SL   YG V     +F+ + ++ + LY T++K +A+      +LK F+ M R 
Sbjct: 70  LFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRM-RD 128

Query: 105 GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA 164
            E  P  Y +  ++K C D A  ++G  +HG ++ +GF +D F    L  MY    +V  
Sbjct: 129 DEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHE 188

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
           ARKVFD M E  +VSWNT+++GY +N  A+ AL + + M +  ++P   ++VSVLPA   
Sbjct: 189 ARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSA 248

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           L+ I +G+ IH           +    ALVDMY KCGS+  ARL+FD M ER+VV+W SM
Sbjct: 249 LRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSM 308

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           I+ Y  N + + A+ +FQ M  EGV+P  +++   L AC+ L  L+RGR +H  +++  L
Sbjct: 309 IDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELEL 368

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
           +  V V  +LI MY KC  V  +  +F +   +  V WNA++ G   NG   +A+  F Q
Sbjct: 369 DRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQ 428

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           M    V+P+  T  S++ A A L+    A  IH  ++R      V V+T L+D+Y+KCG+
Sbjct: 429 MQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGA 488

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           +  A  IF    + ++ +  W+ +I GYG HG G+ A+ LF+EM +  ++PN VTF S +
Sbjct: 489 IMIARLIFDM--MSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVI 546

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            ACSH GL++ GL  F+ M EN+      DHY  +VDLLGRAGRL+EA+D I  MP+KP 
Sbjct: 547 SACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPA 606

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
             V+GA+LGAC IH NV   E  A+ LFEL PE+ G +VLL+ +Y A   W+    VR  
Sbjct: 607 VNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVS 666

Query: 645 MDEKGLRKAPAHSLIEVRN 663
           M  +GLRK P  S++E++N
Sbjct: 667 MLRQGLRKTPGCSMVEIKN 685



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 132/282 (46%), Gaps = 7/282 (2%)

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           LL  CSSL   K  R +     K  L  E + +T L+ ++ +   V  + +VF    KK 
Sbjct: 43  LLERCSSL---KELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKL 99

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
            V +  +L G        KA++ F +M  + VEP       LL      A+L+    IH 
Sbjct: 100 NVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHG 159

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
            L++ GF   +   TGL ++Y+KC  +  A K+F  +P  ++D+V W+ I+AGY  +G  
Sbjct: 160 LLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMP--ERDLVSWNTIVAGYSQNGMA 217

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
             A+ +   M +  ++P+ +T  S L A S   L+  G ++  + +      S  +  T 
Sbjct: 218 RMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFD-SLVNIATA 276

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           +VD+  + G L  A  L   M L+     W +++ A V + N
Sbjct: 277 LVDMYAKCGSLKTARLLFDGM-LERNVVSWNSMIDAYVQNEN 317


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/606 (37%), Positives = 368/606 (60%), Gaps = 3/606 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V++VR LF+++S+   FL+N +++ ++ NG    S+ ++  + +     PDN+TY   
Sbjct: 60  GAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFA 119

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           I A + L   ++G+ LH   ++ G   + FVG+ ++ +Y  F   + ARKVFD M E   
Sbjct: 120 ISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDT 179

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V WNT+ISG+ +N+Y ++++ VF  ML  G+  D  ++ +VL A   L+E  +G  I  L
Sbjct: 180 VLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCL 239

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
            +   L  ++     L+ +Y KCG   + R++FD++ + D++++ +MI+GY  N +  +A
Sbjct: 240 ASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESA 299

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + LF+ +   G R NS T+  L+       +L+  R +   ++K  +  +  V TAL  +
Sbjct: 300 VTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTV 359

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y + N V+ + Q+F  + +K    WNA+++G   NGL  +A+ LF++M+ + + PN  T+
Sbjct: 360 YCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTV 418

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            S+L A A L  L     +H  +      S V VST L+D+Y+KCGS+  A ++F    +
Sbjct: 419 TSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFD--LM 476

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            DK++V W+ +I GYG+HGHG+ A+ LF EM+QSG+ P  VTF S L+ACSH GL+ EG 
Sbjct: 477 VDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGN 536

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
           ++F+ M  N+     ++HY C+VD+LGRAG+L  A + I  MPL+P  AVWGALLGAC+I
Sbjct: 537 EIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMI 596

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           H N E+  VA+K LF+L+PEN G YVLLS +YS  R +  A +VR V+ ++ L K P  +
Sbjct: 597 HKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCT 656

Query: 658 LIEVRN 663
           LIE+ +
Sbjct: 657 LIEIDD 662



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 167/342 (48%), Gaps = 6/342 (1%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           SL    G     RILFD++ +     YN ++  Y  N  +  ++ +F  +L  G+   ++
Sbjct: 257 SLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQ-RVNS 315

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T   +I         +L   +    L  G  +   V   L  +Y    EV+ AR++FD 
Sbjct: 316 STLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDE 375

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
             E S+ SWN +ISGY +N     A+ +F  M+   + P+  +V S+L AC  L  + +G
Sbjct: 376 SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIG 434

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           + +H L+   RL  N+    ALVDMY KCGS+ EAR +FD M +++VVTW +MI GY L+
Sbjct: 435 KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLH 494

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G  + AL LF  M   G+ P  +T  S+L ACS    +  G  +   ++  N   + + E
Sbjct: 495 GHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIF-HSMANNYGFQPMSE 553

Query: 352 --TALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCV 390
               ++D+  +   +  + +   R   +     W A+L  C+
Sbjct: 554 HYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACM 595


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 251/653 (38%), Positives = 386/653 (59%), Gaps = 9/653 (1%)

Query: 19   LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDE-MSER 73
            ++Q  A  K +   K +H+ I ++G P+   L + LV  Y   G +   R +FD  +S+ 
Sbjct: 457  ILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDN 516

Query: 74   SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
              FL+N +M  YA+ G   +S+ +F  M +LG    ++YT+  ++K    L        +
Sbjct: 517  KVFLWNLMMSEYAKIGDYRESIYLFKKMQKLG-ITGNSYTFSCILKCFATLGRVGECKRI 575

Query: 134  HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
            HG V   GF     V N LIA Y   GEV +A K+FD + +  VVSWN++ISG   N ++
Sbjct: 576  HGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFS 635

Query: 194  KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
              AL  F  ML   V  D A++V+ + AC  +  + +GR +H         + +   N L
Sbjct: 636  HSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTL 695

Query: 254  VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
            +DMY KCG++N+A   F++M ++ VV+WTS+I  Y   G   +A+ LF  M+ +GV P+ 
Sbjct: 696  LDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDV 755

Query: 314  LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
             ++ S+L AC+    L +GR +H +  K N+   + V  AL+DMYAKC  ++ ++ VF++
Sbjct: 756  YSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQ 815

Query: 374  TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
               K  V WN ++ G   N L  +A++LF +M  E   P+  T+  LLPA   LA L+  
Sbjct: 816  IPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIG 874

Query: 434  MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
              IH  ++R G+ S + V+  LID+Y KCGSL  A  +F  IP  +KD++ W+V+I+G G
Sbjct: 875  RGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIP--EKDLITWTVMISGCG 932

Query: 494  MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
            MHG G  A++ F++M  +G++P+E+TFTS L+ACSH GLL+EG   FN M+       + 
Sbjct: 933  MHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKL 992

Query: 554  DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
            +HY C+VDLL R G L +AY+LI TMP+KP   +WGALL  C IH +VEL E  A+ +FE
Sbjct: 993  EHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFE 1052

Query: 614  LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILT 666
            LEP+N G YVLL+ +Y+   +W++ + +R+ + ++GL+K+P  S IEV+   T
Sbjct: 1053 LEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFT 1105



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 148/507 (29%), Positives = 256/507 (50%), Gaps = 7/507 (1%)

Query: 95  LKMFLGMLRLGEYNP-DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLI 153
           L+  + +LR+ + +  D   Y  +++ C +    + G  +H  +   G  ++  +G  L+
Sbjct: 434 LRNAVELLRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLV 493

Query: 154 AMYMNFGEVKAARKVFD-AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDC 212
            MY++ G ++  R++FD  + ++ V  WN ++S Y K    +E++ +F  M K G+  + 
Sbjct: 494 FMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNS 553

Query: 213 ASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR 272
            +   +L     L  +   + IH  V     G      N+L+  Y K G V+ A  +FD 
Sbjct: 554 YTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDE 613

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
           + +RDVV+W SMI+G  +NG   +AL  F  M    V  +  T+ + ++AC+++  L  G
Sbjct: 614 LGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLG 673

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           R+LH   +K     EV+    L+DMY+KC  +  + Q F +  +K  V W +++A  V  
Sbjct: 674 RALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVRE 733

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
           GL   A+ LF +M  + V P+  ++ S+L A A    L +  ++H Y+ +      + VS
Sbjct: 734 GLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVS 793

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
             L+D+Y+KCGS+E A+ +FS+IP+  KDIV W+ +I GY  +     A+ LF EM Q  
Sbjct: 794 NALMDMYAKCGSMEEAYLVFSQIPV--KDIVSWNTMIGGYSKNSLPNEALKLFAEM-QKE 850

Query: 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572
            +P+ +T    L AC     L+ G  +   +L N  + S       ++D+  + G L  A
Sbjct: 851 SRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYS-SELHVANALIDMYVKCGSLVHA 909

Query: 573 YDLIRTMPLKPTHAVWGALLGACVIHG 599
             L   +P K     W  ++  C +HG
Sbjct: 910 RLLFDMIPEKDL-ITWTVMISGCGMHG 935



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 133/453 (29%), Positives = 225/453 (49%), Gaps = 12/453 (2%)

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
           NT I  + +    + A+ +     KS  E D  +  S+L  C   K ++ G+M+H +++ 
Sbjct: 422 NTKICKFCEVGDLRNAVELLRMSQKS--ELDLNAYSSILQLCAEHKCLQEGKMVHSVISS 479

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDR-MSERDVVTWTSMINGYALNGDVRNALG 299
             +         LV MYV CG++ E R +FD  +S+  V  W  M++ YA  GD R ++ 
Sbjct: 480 NGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIY 539

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           LF+ MQ  G+  NS T   +L   ++L  +   + +H    K        V  +LI  Y 
Sbjct: 540 LFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYF 599

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           K   V  + ++F     +  V WN++++GCV NG +  A+E F QML+  V  + ATL +
Sbjct: 600 KSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVN 659

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
            + A A +  L     +H   ++  F   V  +  L+D+YSKCG+L  A + F ++    
Sbjct: 660 SVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMG--Q 717

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
           K +V W+ +IA Y   G  + A+ LF EM   GV P+  + TS LHAC+ G  LD+G D+
Sbjct: 718 KTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDV 777

Query: 540 FNFMLENHQT-CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
            N++ +N+   C    +   ++D+  + G ++EAY +   +P+K     W  ++G    +
Sbjct: 778 HNYIRKNNMALCLPVSN--ALMDMYAKCGSMEEAYLVFSQIPVKDI-VSWNTMIGG---Y 831

Query: 599 GNVELGEVAAKWLFELEPENPGNYVLLSKLYSA 631
               L   A K   E++ E+  + + ++ L  A
Sbjct: 832 SKNSLPNEALKLFAEMQKESRPDGITMACLLPA 864


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 255/636 (40%), Positives = 369/636 (58%), Gaps = 14/636 (2%)

Query: 33  KQLHAFIITSGPLFT-HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           K LHA ++ +G + +  + + LV  Y   G VS  R  FD++ ++  + +N+++  Y  N
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHN 195

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G  H+++  F  +L + E  PD YT+P V+KAC  L     G  +H      GF  + FV
Sbjct: 196 GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRRIHCWAFKLGFQWNVFV 252

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
              LI MY  FG    AR +FD M    + SWN +ISG  +N  A +AL V D M   G+
Sbjct: 253 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 312

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           + +  +VVS+LP C  L +I    +IH  V    L  ++   NAL++MY K G++ +AR 
Sbjct: 313 KMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARK 372

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
            F +M   DVV+W S+I  Y  N D   A G F  MQ  G +P+ LT+ SL S  +    
Sbjct: 373 AFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRD 432

Query: 329 LKRGRSLHAWTIKQN-LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            K  RS+H + +++  L  +V++  A++DMYAK  L+  + +VF     K  + WN ++ 
Sbjct: 433 CKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLIT 492

Query: 388 GCVHNGLARKAVELFRQMLVEVVE--PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           G   NGLA +A+E+++ M+ E  E  PN  T  S+LPAYA +  LQQ M IH  +I+   
Sbjct: 493 GYAQNGLASEAIEVYK-MMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNL 551

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
              V V+T LID+Y KCG L  A  +F ++P   +  V W+ II+ +G+HGH E  + LF
Sbjct: 552 HLDVFVATCLIDVYGKCGRLVDAMSLFYQVP--QESSVTWNAIISCHGIHGHAEKTLKLF 609

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
            EM+  GV+P+ VTF S L ACSH G ++EG   F  M E +       HY C+VDLLGR
Sbjct: 610 GEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGR 668

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           AG L+ AY  I+ MPL+P  ++WGALLGAC IHGN+ELG+ A+  LFE++ +N G YVLL
Sbjct: 669 AGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLL 728

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           S +Y+ V +W+  + VR +  E+GL+K P  S IEV
Sbjct: 729 SNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEV 764


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/658 (36%), Positives = 379/658 (57%), Gaps = 8/658 (1%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRI 65
           PK       L+Q   +   I   K +H  II SG        ++  ++      V N R+
Sbjct: 47  PKRREFA-NLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARV 105

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD+M  ++   +++++ MY+Q G S ++L +F+ + R    +P+ +    VI+ACT L 
Sbjct: 106 VFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLG 165

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             + G  LHG V+ +GFD D +VG  LI  Y   G ++ AR VFD + E + V+W T+I+
Sbjct: 166 VVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIA 225

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY K   +  +L +F  M ++ V PD   V SVL AC  L+ +E G+ IH  V       
Sbjct: 226 GYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEM 285

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           +++  N L+D Y KC  V   R +FD+M  +++++WT+MI+GY  N     A+ LF  M 
Sbjct: 286 DVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMN 345

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
             G +P+     S+L++C S   L++GR +HA+TIK NLE +  V+  LIDMYAK NL+ 
Sbjct: 346 RLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLI 405

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + +VF   +++  + +NA++ G        +A+ELF +M V + +PN+ T  +L+ A +
Sbjct: 406 DAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAAS 465

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            LA L+     H  L++ G      V+  L+D+Y+KCGS+E A K+F+      +D+V W
Sbjct: 466 NLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIW--RDVVCW 523

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I+ +  HG  E A+ +F+EM++ G+QPN VTF + L ACSH G +++GL+ FN M  
Sbjct: 524 NSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSM-P 582

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
                   +HY C+V LLGR+G+L EA + I  MP++P   VW +LL AC I GNVELG+
Sbjct: 583 GFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGK 642

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            AA+     +P++ G+Y+LLS ++++   W D + VRD MD   + K P  S IEV N
Sbjct: 643 YAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNN 700


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/642 (38%), Positives = 378/642 (58%), Gaps = 11/642 (1%)

Query: 28  SIAGTKQLHAFIITSGPLFTHLRS----SLVRAYGHVSNVRILFDEMSERSSFLYNTVMK 83
           S+    Q+   II +G    HL      SL   +  ++    +F+ +  +   LY+T++K
Sbjct: 56  SLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLK 115

Query: 84  MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD 143
            YA+N    D+++ F   +R  E  P  Y +  +++   +    + G  +HG V+  GF 
Sbjct: 116 GYAKNSTLRDAVR-FYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQ 174

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
            + F    ++ +Y    +++ A K+F+ M +  +VSWNT+++GY +N +A+ A+ V   M
Sbjct: 175 SNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQM 234

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIH--ELVAGGRLGKNIAAWNALVDMYVKCG 261
            ++G +PD  ++VSVLPA   LK + +GR IH     AG     N+A   A++D Y KCG
Sbjct: 235 QEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVAT--AMLDTYFKCG 292

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
           SV  ARLVF  MS R+VV+W +MI+GYA NG+   A   F  M  EGV P ++++   L 
Sbjct: 293 SVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALH 352

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
           AC++L  L+RGR +H    ++ +  +V V  +LI MY+KC  V ++  VF     K  V 
Sbjct: 353 ACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVT 412

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           WNA++ G   NG   +A+ LF +M    ++P+  TL S++ A A L+  +QA  IH   I
Sbjct: 413 WNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAI 472

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           R      V V T LID ++KCG++++A K+F    ++++ ++ W+ +I GYG +GHG  A
Sbjct: 473 RTLMDKNVFVCTALIDTHAKCGAIQTARKLFD--LMQERHVITWNAMIDGYGTNGHGREA 530

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561
           + LF EM    V+PNE+TF S + ACSH GL++EG+  F  M EN+      DHY  +VD
Sbjct: 531 LDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVD 590

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGN 621
           LLGRAGRLD+A+  I+ MP+KP   V GA+LGAC IH NVELGE  A  LF+L+P++ G 
Sbjct: 591 LLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGY 650

Query: 622 YVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +VLL+ +Y++   W     VR  M++KG++K P  SL+E+RN
Sbjct: 651 HVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRN 692



 Score = 47.0 bits (110), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 6/163 (3%)

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           LL     L +L Q + +   +I+ GF +     T LI ++ K  S+  A ++F   P++ 
Sbjct: 50  LLELCTSLKELHQILPL---IIKNGFYNEHLFQTKLISLFCKFNSITEAARVFE--PVEH 104

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
           K  V++  ++ GY  +     AV  ++ M    V P    FT  L        L  G ++
Sbjct: 105 KLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREI 164

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
              ++ N    S     T +V+L  +  ++++AY +   MP +
Sbjct: 165 HGMVITNGFQ-SNLFAMTAVVNLYAKCRQIEDAYKMFERMPQR 206


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/648 (38%), Positives = 380/648 (58%), Gaps = 8/648 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAY---GHVSNVRILFDEMSERS 74
           ++Q  A  KS+   K++H+ I ++G      L + LV  Y   G +   R +FD +    
Sbjct: 63  VLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDK 122

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
            FL+N +M  YA+ G   +S+ +F  M  LG    D+YT+  V+K     A  +    +H
Sbjct: 123 IFLWNLLMSEYAKIGNYRESVGLFEKMQELG-IRGDSYTFTCVLKGFAASAKVRECKRVH 181

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           G VL  GF     V N LIA Y   GEV++AR +FD + +  VVSWN++ISG   N +++
Sbjct: 182 GYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSR 241

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
             L  F  ML  GV+ D A++V+VL AC  +  + +GR +H           +   N L+
Sbjct: 242 NGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLL 301

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           DMY KCG++N A  VF +M E  +V+WTS+I  +   G    A+GLF  MQ +G+RP+  
Sbjct: 302 DMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIY 361

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
            + S++ AC+    L +GR +H    K N+   + V  AL++MYAKC  ++ +  +F++ 
Sbjct: 362 AVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQL 421

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
             K  V WN ++ G   N L  +A++LF  M  ++ +P+D T+  +LPA A LA L++  
Sbjct: 422 PVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQL-KPDDVTMACVLPACAGLAALEKGR 480

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            IH +++R G+ S + V+  L+D+Y KCG L  A ++F  IP   KD+++W+V+IAGYGM
Sbjct: 481 EIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIP--KKDMILWTVMIAGYGM 538

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           HG G+ A+S F++M  +G++P E +FTS L+AC+H GLL EG  LF+ M        + +
Sbjct: 539 HGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLE 598

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HY C+VDLL R+G L  AY  I TMP+KP  A+WGALL  C IH +VEL E  A+ +FEL
Sbjct: 599 HYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFEL 658

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           EPEN   YVLL+ +Y+   +W++ + ++  + + GL+     S IEV+
Sbjct: 659 EPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQ 706



 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 152/488 (31%), Positives = 258/488 (52%), Gaps = 7/488 (1%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           TY  V++ C +L   + G  +H  +   G  +D  +G  L+ MY+N G++   R++FD +
Sbjct: 59  TYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGI 118

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
               +  WN L+S Y K    +E++ +F+ M + G+  D  +   VL       ++   +
Sbjct: 119 LNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECK 178

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            +H  V     G   A  N+L+  Y KCG V  AR++FD +S+RDVV+W SMI+G  +NG
Sbjct: 179 RVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNG 238

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
             RN L  F  M   GV  +S T+ ++L AC+++  L  GR+LHA+ +K      V+   
Sbjct: 239 FSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNN 298

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
            L+DMY+KC  +  + +VF +  +   V W +I+A  V  GL  +A+ LF +M  + + P
Sbjct: 299 TLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRP 358

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           +   + S++ A A    L +   +H ++ +    S + VS  L+++Y+KCGS+E A+ IF
Sbjct: 359 DIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIF 418

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
           S++P+  K+IV W+ +I GY  +     A+ LF +M Q  ++P++VT    L AC+    
Sbjct: 419 SQLPV--KNIVSWNTMIGGYSQNSLPNEALQLFLDM-QKQLKPDDVTMACVLPACAGLAA 475

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTC-IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
           L++G ++   +L          H  C +VD+  + G L  A  L   +P K    +W  +
Sbjct: 476 LEKGREIHGHILRKGYFSDL--HVACALVDMYVKCGLLVLAQQLFDMIP-KKDMILWTVM 532

Query: 592 LGACVIHG 599
           +    +HG
Sbjct: 533 IAGYGMHG 540


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 252/645 (39%), Positives = 374/645 (57%), Gaps = 18/645 (2%)

Query: 28  SIAGTKQLHAFIITSGP-----LFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVM 82
           ++  TK+LHA ++  G      L T L  +L   +G +S  R  FD + +++ F +N+++
Sbjct: 34  NVNATKKLHALLLVFGKSQNIVLSTKL-INLYVTHGDISLSRSTFDYIHKKNIFSWNSII 92

Query: 83  KMYAQNGASHDSLK---MFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLI 139
             Y + G  H+++        M   G   PD YT+P ++KAC  L     G  +H  V  
Sbjct: 93  SAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFK 149

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
            GF+ D FV   L+ +Y  +G +  A KVF  M    V SWN +ISG+ +N  A  AL V
Sbjct: 150 MGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGV 209

Query: 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVK 259
            + M   GV+ D  +V S+LP C    ++  G +IH  V    L  ++   NAL++MY K
Sbjct: 210 LNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSK 269

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
            G + +A++VFD+M  RD+V+W S+I  Y  N D   AL  F+ MQ  G+RP+ LT+ SL
Sbjct: 270 FGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSL 329

Query: 320 LSACSSLYYLKRGRSLHAWTIKQN-LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
            S  S L   +  RS+  + I++  L+ +V++  AL++MYAK   +  +  VF +  +K 
Sbjct: 330 TSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKD 389

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVE--PNDATLNSLLPAYAILADLQQAMNI 436
           T+ WN ++ G   NGLA +A++ +  M+ E  +  PN  T  S++PAY+ +  LQQ M I
Sbjct: 390 TISWNTLVTGYTQNGLASEAIDAY-NMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKI 448

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H  LI+      V V+T LID+Y KCG LE A  +F EIP +D   V W+ IIA  G+HG
Sbjct: 449 HAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIP-RDTS-VPWNAIIASLGIHG 506

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
            GE A+ LFK+M+   V+ + +TF S L ACSH GL+DEG   F+ M + +       HY
Sbjct: 507 RGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHY 566

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
            C+VDLLGRAG L++AY+L+R MP++P  ++WGALL AC I+GN ELG +A+  L E++ 
Sbjct: 567 GCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDS 626

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           EN G YVLLS +Y+   +W+    VR +  ++GLRK P  S + V
Sbjct: 627 ENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVV 671


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 252/645 (39%), Positives = 374/645 (57%), Gaps = 18/645 (2%)

Query: 28  SIAGTKQLHAFIITSGP-----LFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVM 82
           ++  TK+LHA ++  G      L T L  +L   +G +S  R  FD + +++ F +N+++
Sbjct: 34  NVNATKKLHALLLVFGKSQNIVLSTKL-INLYVTHGDISLSRSTFDYIHKKNIFSWNSII 92

Query: 83  KMYAQNGASHDSLK---MFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLI 139
             Y + G  H+++        M   G   PD YT+P ++KAC  L     G  +H  V  
Sbjct: 93  SAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFK 149

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
            GF+ D FV   L+ +Y  +G +  A KVF  M    V SWN +ISG+ +N  A  AL V
Sbjct: 150 MGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGV 209

Query: 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVK 259
            + M   GV+ D  +V S+LP C    ++  G +IH  V    L  ++   NAL++MY K
Sbjct: 210 LNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSK 269

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
            G + +A++VFD+M  RD+V+W S+I  Y  N D   AL  F+ MQ  G+RP+ LT+ SL
Sbjct: 270 FGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSL 329

Query: 320 LSACSSLYYLKRGRSLHAWTIKQN-LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
            S  S L   +  RS+  + I++  L+ +V++  AL++MYAK   +  +  VF +  +K 
Sbjct: 330 TSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKD 389

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVE--PNDATLNSLLPAYAILADLQQAMNI 436
           T+ WN ++ G   NGLA +A++ +  M+ E  +  PN  T  S++PAY+ +  LQQ M I
Sbjct: 390 TISWNTLVTGYTQNGLASEAIDAY-NMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKI 448

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H  LI+      V V+T LID+Y KCG LE A  +F EIP +D   V W+ IIA  G+HG
Sbjct: 449 HAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIP-RDTS-VPWNAIIASLGIHG 506

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
            GE A+ LFK+M+   V+ + +TF S L ACSH GL+DEG   F+ M + +       HY
Sbjct: 507 RGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHY 566

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
            C+VDLLGRAG L++AY+L+R MP++P  ++WGALL AC I+GN ELG +A+  L E++ 
Sbjct: 567 GCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDS 626

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           EN G YVLLS +Y+   +W+    VR +  ++GLRK P  S + V
Sbjct: 627 ENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVV 671


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 251/673 (37%), Positives = 377/673 (56%), Gaps = 14/673 (2%)

Query: 2   NGPSHHT--LPKTTHLVIKLVQQYAA-----TKSIAGTKQLHAFIITSGPLFTHLRS--- 51
           N PS H   L +  ++   + +  AA       S+   +Q+   +  +G    H      
Sbjct: 16  NPPSRHRHFLSERNYIPANVYEHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKL 75

Query: 52  -SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPD 110
            SL   YG V     +F+ +  + + LY+T++K +A+      +L+ F+ M R  +  P 
Sbjct: 76  VSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRM-RYDDVEPV 134

Query: 111 NYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD 170
            Y +  ++K C D A  ++G  +HG ++ +GF +D F    L  MY    +V  ARKVFD
Sbjct: 135 VYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFD 194

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
            M E  +VSWNT+++GY +N  A+ AL +   M +  ++P   ++VSVLPA   L+ I +
Sbjct: 195 RMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISV 254

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
           G+ IH           +    ALVDMY KCGS+  AR +FD M ER+VV+W SMI+ Y  
Sbjct: 255 GKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQ 314

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           N + + A+ +FQ M  EGV+P  +++   L AC+ L  L+RGR +H  +++  L+  V V
Sbjct: 315 NENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSV 374

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
             +LI MY KC  V  +  +F +   +  V WNA++ G   NG    A+  F QM    V
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTV 434

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           +P+  T  S++ A A L+    A  IH  ++R      V V+T L+D+Y+KCG++  A  
Sbjct: 435 KPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARL 494

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           IF    + ++ +  W+ +I GYG HG G+ A+ LF+EM +  ++PN VTF S + ACSH 
Sbjct: 495 IFDM--MSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHS 552

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           GL++ GL  F  M EN+      DHY  +VDLLGRAGRL+EA+D I  MP+KP   V+GA
Sbjct: 553 GLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 612

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           +LGAC IH NV   E AA+ LFEL P++ G +VLL+ +Y A   W+    VR  M  +GL
Sbjct: 613 MLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 672

Query: 651 RKAPAHSLIEVRN 663
           RK P  S++E++N
Sbjct: 673 RKTPGCSMVEIKN 685


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/611 (37%), Positives = 355/611 (58%), Gaps = 4/611 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V   R +FD+M ++    + T+M  YA NG   + L++F  M +LG    +  +    
Sbjct: 277 GDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM-KLGNVRINKVSAVSA 335

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
             A  +    + G  +HG  L    D D  V   L+ MY   GE + A+++F  +    +
Sbjct: 336 FLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDL 395

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V+W+ +I+   +  Y +EAL +F  M    ++P+  +++S+LPAC  L  +++G+ IH  
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCF 455

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                +  +++   ALV MY KCG    A   F+RMS RD+VTW S+INGYA  GD  NA
Sbjct: 456 TVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNA 515

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + +F  ++   + P++ T+  ++ AC+ L  L +G  +H   +K   E +  V+ ALIDM
Sbjct: 516 IDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDM 575

Query: 358 YAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           YAKC  +  +  +F +T   K  V WN I+A  + NG A++A+  F QM +E   PN  T
Sbjct: 576 YAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVT 635

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
             S+LPA A LA  ++ M  H  +I+ GFLS   V   LID+Y+KCG L+ + K+F+E+ 
Sbjct: 636 FVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEM- 694

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
              KD V W+ +++GY +HGHG+ A++LF  M +S VQ + V+F S L AC H GL++EG
Sbjct: 695 -DHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEG 753

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
             +F+ M + +      +HY C+VDLLGRAG  DE    I+ MP++P   VWGALLG+C 
Sbjct: 754 RKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCR 813

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           +H NV+LGEVA   L +LEP NP ++V+LS +Y+   RW DA   R  M++ GL+K P  
Sbjct: 814 MHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGC 873

Query: 657 SLIEVRNILTA 667
           S +E++N + A
Sbjct: 874 SWVELKNKVHA 884



 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 188/603 (31%), Positives = 315/603 (52%), Gaps = 14/603 (2%)

Query: 34  QLHAFIITSGPLFTHLRSSLVRAYG--HVSNV-RILFDEMSERSSFLYNTVMKMYAQNGA 90
           Q+HA II SG    H  + L+  Y   H  ++ R +FD     S  L+N++++ Y ++  
Sbjct: 50  QIHAQIIVSGFKHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQ 109

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
            +++L+M+  M+  G   PD YT+  V+KACT     + G+  HG +   G + D F+G 
Sbjct: 110 YNEALEMYYCMVEKG-LEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGA 168

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            L+ MY   G++K AR+VFD M +  VV+WN +I+G  ++    EA+  F  M   GVEP
Sbjct: 169 GLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEP 228

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
              S++++ P    L  IE+ R IH  V   R   + A  N L+D+Y KCG V+ AR VF
Sbjct: 229 SSVSLLNLFPGICKLSNIELCRSIHGYVF--RRDFSSAVSNGLIDLYSKCGDVDVARRVF 286

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
           D+M ++D V+W +M+ GYA NG     L LF  M+   VR N ++  S   A +    L+
Sbjct: 287 DQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLE 346

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
           +G+ +H   ++Q ++ +++V T L+ MYAKC   + + Q+F     +  V W+AI+A  V
Sbjct: 347 KGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALV 406

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
             G   +A+ LF++M  + ++PN  TL S+LPA A L+ L+   +IHC+ ++    S + 
Sbjct: 407 QTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLS 466

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
             T L+ +Y+KCG   +A   F+   +  +DIV W+ +I GY   G    A+ +F ++  
Sbjct: 467 TGTALVSMYAKCGFFTAALTTFNR--MSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM--LENHQTCSRADHYTCIVDLLGRAGR 568
           S + P+  T    + AC+    LD+G  +   +  L     C   +    ++D+  + G 
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKN---ALIDMYAKCGS 581

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           L  A  L            W  ++ A + +G+ +   +++     LE  +P +   +S L
Sbjct: 582 LPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEA-ISSFHQMRLENFHPNSVTFVSVL 640

Query: 629 YSA 631
            +A
Sbjct: 641 PAA 643



 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 175/543 (32%), Positives = 280/543 (51%), Gaps = 6/543 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +   R +FD+M +R    +N ++   +Q+    +++  F  M  +G   P + +   +
Sbjct: 178 GDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVG-VEPSSVSLLNL 236

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
                 L+  +L  ++HG V     D  + V N LI +Y   G+V  AR+VFD M +   
Sbjct: 237 FPGICKLSNIELCRSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDD 294

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSW T+++GY  N    E L +FD M    V  +  S VS   A     ++E G+ IH  
Sbjct: 295 VSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGC 354

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
               R+  +I     L+ MY KCG   +A+ +F  +  RD+V W+++I      G    A
Sbjct: 355 ALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEA 414

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L LFQ MQ + ++PN +T+ S+L AC+ L  LK G+S+H +T+K +++ ++   TAL+ M
Sbjct: 415 LSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSM 474

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAKC     +   F R S +  V WN+++ G    G    A+++F ++ +  + P+  T+
Sbjct: 475 YAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTM 534

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
             ++PA A+L DL Q   IH  +++ GF S   V   LID+Y+KCGSL SA  +F++   
Sbjct: 535 VGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDF 594

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
             KD V W+VIIA Y  +GH + A+S F +M      PN VTF S L A ++     EG+
Sbjct: 595 T-KDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGM 653

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             F+  +      S       ++D+  + G+LD +  L   M  K T   W A+L    +
Sbjct: 654 -AFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDT-VSWNAMLSGYAV 711

Query: 598 HGN 600
           HG+
Sbjct: 712 HGH 714



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 150/492 (30%), Positives = 249/492 (50%), Gaps = 15/492 (3%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           YP ++ +C  L      + +H +++++GF     + + LI +Y  F +   AR VFD+  
Sbjct: 35  YPRLLSSCKHL---NPLLQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTP 90

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
             S + WN++I  Y ++    EAL ++  M++ G+EPD  +   VL AC     ++ G  
Sbjct: 91  NPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVW 150

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
            H  +    L +++     LVDMY K G +  AR VFD+M +RDVV W +MI G + + D
Sbjct: 151 FHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSED 210

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              A+  F+ MQ  GV P+S+++ +L      L  ++  RS+H +  +++      V   
Sbjct: 211 PCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSA--VSNG 268

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           LID+Y+KC  V ++ +VF +   +  V W  ++AG  HNG   + +ELF +M +  V  N
Sbjct: 269 LIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRIN 328

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
             +  S   A A   DL++   IH   ++    S + V+T L+ +Y+KCG  E A ++F 
Sbjct: 329 KVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLF- 387

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
              ++ +D+V WS IIA     G+ E A+SLF+EM    ++PN VT  S L AC+   LL
Sbjct: 388 -WGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLL 446

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
             G  +  F ++     S     T +V +  + G    A      M  +     W +L  
Sbjct: 447 KLGKSIHCFTVKADMD-SDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDI-VTWNSL-- 502

Query: 594 ACVIHGNVELGE 605
              I+G  ++G+
Sbjct: 503 ---INGYAQIGD 511


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/635 (37%), Positives = 383/635 (60%), Gaps = 9/635 (1%)

Query: 34  QLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFL-YNTVMKMYAQN 88
           ++H  II  G      + +SLV  Y   +++   R LFD M+ER+  + +N+++  Y+ N
Sbjct: 31  EIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLN 90

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   ++L +F  M + G    + YT    ++AC D +++KLG+ +H  +L +   +D +V
Sbjct: 91  GQCMEALGLFREMQKAG-VGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYV 149

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+AM++ FG++  A ++FD + E   ++WN++I+G+ +N    EAL  F  +  + +
Sbjct: 150 ANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANL 209

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +PD  S++S+L A G L  +  G+ IH       L  N+   N L+DMY KC  V  A L
Sbjct: 210 KPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGL 269

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VFD+M  +D+++WT++I  YA N     AL L + +Q +G+  +++ IGS L ACS L  
Sbjct: 270 VFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRC 329

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L   + +H +T+K+ L  +++++  +ID+YA C  +  + ++F     K  V W ++++ 
Sbjct: 330 LSHAKEVHGYTLKRGLS-DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISC 388

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            VHNGLA +A+ +F  M    VEP+  TL S+L A A L+ L +   IH ++ R GF+  
Sbjct: 389 YVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLE 448

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
                 L+D+Y+ CGSLE+A+K+F  I  + K +V+W+ +I  YGMHG G+ AV LF  M
Sbjct: 449 GSTVNSLVDMYACCGSLENAYKVF--ICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIM 506

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
               + P+ +TF + L+ACSH GL++EG  L   M   +Q     +HY C+VDLLGRA  
Sbjct: 507 EDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANH 566

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           L+EAY  +++M ++PT  VW A LGAC IH N +LGE+AA+ L +L+P++PG+YVL+S +
Sbjct: 567 LEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNV 626

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           ++A  RWKD E VR  M   GL+K P  S IEV N
Sbjct: 627 FAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGN 661



 Score =  249 bits (636), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 173/566 (30%), Positives = 284/566 (50%), Gaps = 41/566 (7%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           D++T+P V+KAC  +     G  +HG ++  G+D   FV N L++MY    ++  ARK+F
Sbjct: 9   DSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLF 68

Query: 170 DAMWE-HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           D M E + VVSWN++IS Y  N    EAL +F  M K+GV  +  ++V+ L AC      
Sbjct: 69  DRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFK 128

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
           ++G  IH  +       ++   NALV M+V+ G ++ A  +FD + E+D +TW SMI G+
Sbjct: 129 KLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGF 188

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
             NG    AL  F  +Q   ++P+ +++ S+L+A   L YL  G+ +HA+ +K  L+  +
Sbjct: 189 TQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNL 248

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            +   LIDMY+KC  V  +  VF +   K  + W  ++A    N    +A++L R++  +
Sbjct: 249 RIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTK 308

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            ++ +   + S L A + L  L  A  +H Y ++ G LS + +   +ID+Y+ CG++  A
Sbjct: 309 GMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRG-LSDLMMQNMIIDVYADCGNINYA 367

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            ++F    IK KD+V W+ +I+ Y  +G    A+ +F  M ++ V+P+ +T  S L A +
Sbjct: 368 TRMFE--SIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAA 425

Query: 529 HGGLLDEGLDLF------NFMLENHQTCSRADHYTC------------------------ 558
               L++G ++        FMLE     S  D Y C                        
Sbjct: 426 SLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTT 485

Query: 559 IVDLLGRAGRLDEAYDLIRTM---PLKPTHAVWGALLGACVIHGNVELGE---VAAKWLF 612
           +++  G  GR   A +L   M    L P H  + ALL AC   G +  G+      K  +
Sbjct: 486 MINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKY 545

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDA 638
           +LEP  P +Y  L  L       ++A
Sbjct: 546 QLEPW-PEHYACLVDLLGRANHLEEA 570



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 127/432 (29%), Positives = 214/432 (49%), Gaps = 29/432 (6%)

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           GV  D  +   VL ACG +++I  G  IH L+        +   N+LV MY KC  +  A
Sbjct: 5   GVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGA 64

Query: 267 RLVFDRMSER-DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           R +FDRM+ER DVV+W S+I+ Y+LNG    ALGLF+ MQ  GV  N+ T+ + L AC  
Sbjct: 65  RKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACED 124

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
             + K G  +HA  +K N   +V V  AL+ M+ +   +  + ++F    +K  + WN++
Sbjct: 125 SSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSM 184

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           +AG   NGL  +A++ F  +    ++P++ +L S+L A   L  L     IH Y ++   
Sbjct: 185 IAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWL 244

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
            S + +   LID+YSKC  +  A  +F ++   +KD++ W+ +IA Y  +     A+ L 
Sbjct: 245 DSNLRIGNTLIDMYSKCCCVAYAGLVFDKMI--NKDLISWTTVIAAYAQNNCHTEALKLL 302

Query: 506 KEMVQSGVQPNEVTFTSALHACS-----------HGGLLDEGLDLFNFMLENHQTCSRAD 554
           +++   G+  + +   S L ACS           HG  L  GL   + M++N        
Sbjct: 303 RKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLS--DLMMQNM------- 353

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
               I+D+    G ++ A  +  ++  K     W +++ +C +H  +    +   +L + 
Sbjct: 354 ----IIDVYADCGNINYATRMFESIKCKDV-VSWTSMI-SCYVHNGLANEALGVFYLMKE 407

Query: 615 EPENPGNYVLLS 626
               P +  L+S
Sbjct: 408 TSVEPDSITLVS 419



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 126/244 (51%), Gaps = 3/244 (1%)

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M+  GV  +S T   +L AC  +  + RG  +H   IK   +  V V  +L+ MYAKCN 
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 364 VKLSFQVFARTSKKK-TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
           +  + ++F R +++   V WN+I++    NG   +A+ LFR+M    V  N  TL + L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A    +  +  M IH  +++   +  V V+  L+ ++ + G +  A +IF E+   +KD 
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELD--EKDN 178

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
           + W+ +IAG+  +G    A+  F  +  + ++P+EV+  S L A    G L  G ++  +
Sbjct: 179 ITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAY 238

Query: 543 MLEN 546
            ++N
Sbjct: 239 AMKN 242


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/614 (38%), Positives = 359/614 (58%), Gaps = 6/614 (0%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           SSL++ Y   G++ + + LFDE+  R   L+N ++  Y +NG  + +L  F  M R    
Sbjct: 216 SSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEM-RNSCV 274

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            P++ ++  ++  C      + GI LHG V+ +GF+ D  V N +I MY   G +  ARK
Sbjct: 275 KPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARK 334

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +FD M +   V+WN LI+GY +N +  EA+ +F  M+ SGV+ D  +  S LP+      
Sbjct: 335 IFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGS 394

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           ++  + +H  +    +  ++   +ALVD+Y K G V  A   F + +  DV   T+MI+G
Sbjct: 395 LKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISG 454

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y LNG    AL LF+ +  EG+ PN LT+ S+L AC++L  LK G+ LH   +K+ LE  
Sbjct: 455 YVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKGLENV 514

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
             V +++  MYAK   + L++Q F R   K +V WN ++     NG    A++LFRQM  
Sbjct: 515 CQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGT 574

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
              + +  +L++ L A A    L     +HC+++R  F+S   V++ LID+YSKCG L  
Sbjct: 575 SGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLAL 634

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A  +F  +  K++  V W+ IIA YG HG     + LF EMV++G+QP+ VTF   + AC
Sbjct: 635 ARSVFDMMDWKNE--VSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSAC 692

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
            H GL+DEG+  F  M E +  C+R +H+ C+VDL GRAGRL EA+D I++MP  P    
Sbjct: 693 GHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGT 752

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           WG+LLGAC +HGNVEL ++A+K L EL+P N G YVLLS +++    W+    VR +M E
Sbjct: 753 WGSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKE 812

Query: 648 KGLRKAPAHSLIEV 661
           KG++K P +S I+V
Sbjct: 813 KGVQKIPGYSWIDV 826



 Score =  275 bits (702), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 168/547 (30%), Positives = 285/547 (52%), Gaps = 8/547 (1%)

Query: 53  LVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNY 112
           L R++  V N   LF  +    S  +N +++ ++  G    +L  F  ML      PD Y
Sbjct: 123 LCRSFKDVGN---LFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLG-SNVAPDKY 178

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           T+P VIKAC  L    L   +H      GF MD F+G+ LI +Y + G +  A+ +FD +
Sbjct: 179 TFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDEL 238

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
                + WN +++GY KN     AL  F  M  S V+P+  S V +L  C     +  G 
Sbjct: 239 PVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGI 298

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            +H LV       +    N ++ MY KCG++ +AR +FD M + D VTW  +I GY  NG
Sbjct: 299 QLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNG 358

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
               A+ LF+ M   GV+ +S+T  S L +      LK  + +H++ ++  +  +V +++
Sbjct: 359 FTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKS 418

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           AL+D+Y K   V+++ + F + +        A+++G V NGL  +A+ LFR ++ E + P
Sbjct: 419 ALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVP 478

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           N  T+ S+LPA A LA L+    +HC +++ G  +V +V + +  +Y+K G L+ A++ F
Sbjct: 479 NCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFF 538

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
             +P+KD   V W+++I  +  +G  E A+ LF++M  SG + + V+ ++ L AC++   
Sbjct: 539 RRMPVKDS--VCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPA 596

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           L  G +L  F++ N    S     + ++D+  + G+L  A  +   M  K     W +++
Sbjct: 597 LYYGKELHCFVVRN-SFISDTFVASTLIDMYSKCGKLALARSVFDMMDWK-NEVSWNSII 654

Query: 593 GACVIHG 599
            A   HG
Sbjct: 655 AAYGNHG 661



 Score = 43.1 bits (100), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 4/102 (3%)

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
           QQ   IH  ++  G    + + + ++ +Y  C S +    +F  + +     + W+ +I 
Sbjct: 93  QQVRQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYS--LPWNWLIR 150

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
           G+ M G  + A+  F  M+ S V P++ TF   + AC  GGL
Sbjct: 151 GFSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKAC--GGL 190


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/640 (39%), Positives = 363/640 (56%), Gaps = 13/640 (2%)

Query: 23  YAATKSIAGTKQLHAFIITSGP-----LFTHLRSSLVRAYGHVSNVRILFDEMSERSSFL 77
           + +  +I   KQLHA ++  G      L T L  +L    G +S     F  +  ++ F 
Sbjct: 58  FRSCTNINVAKQLHALLLVLGKAQDVVLLTQL-VTLYATLGDLSLSSTTFKHIQRKNIFS 116

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N+++  Y + G   DS+     +L L    PD YT+P V+KAC  LA    G  +H  V
Sbjct: 117 WNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLA---DGEKMHCWV 173

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           L  GF+ D +V   LI +Y  FG V+ A KVF  M    V SWN +ISG+ +N    EAL
Sbjct: 174 LKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEAL 233

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
            V D M    V+ D  +V S+LP C    ++  G ++H  V    L  ++   NAL++MY
Sbjct: 234 RVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMY 293

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
            K G + +A+ VFD M  RD+V+W S+I  Y  N D   ALG F+ M F G+RP+ LT+ 
Sbjct: 294 SKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVV 353

Query: 318 SLLSACSSLYYLKRGRSLHAWTIK-QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
           SL S    L   + GR++H + ++ + LE ++++  AL++MYAK   +  +  VF +   
Sbjct: 354 SLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPS 413

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLV-EVVEPNDATLNSLLPAYAILADLQQAMN 435
           +  + WN ++ G   NGLA +A++ +  M     + PN  T  S+LPAY+ +  LQQ M 
Sbjct: 414 RDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMK 473

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           IH  LI+      V V+T LID+Y KCG LE A  +F EIP   +  V W+ II+  G+H
Sbjct: 474 IHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIP--QETSVPWNAIISSLGIH 531

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
           GHGE A+ LFK+M   GV+ + +TF S L ACSH GL+DE    F+ M + ++      H
Sbjct: 532 GHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKH 591

Query: 556 YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
           Y C+VDL GRAG L++AY+L+  MP++   ++WG LL AC IHGN ELG  A+  L E++
Sbjct: 592 YGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVD 651

Query: 616 PENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
            EN G YVLLS +Y+ V +W+ A  VR +  ++GLRK P 
Sbjct: 652 SENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPG 691


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/611 (37%), Positives = 354/611 (57%), Gaps = 4/611 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V   R +FD+M ++    + T+M  YA NG   + L++F  M +LG    +  +    
Sbjct: 277 GDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM-KLGNVRINKVSAVSA 335

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
             A  +    + G  +HG  L    D D  V   L+ MY   GE + A+++F  +    +
Sbjct: 336 FLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDL 395

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V+W+ +I+   +  Y +EAL +F  M    ++P+  +++S+LPAC  L  +++G+ IH  
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCF 455

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                +  +++   ALV MY KCG    A   F+RMS RD+VTW S+INGYA  GD  NA
Sbjct: 456 TVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNA 515

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + +F  ++   + P++ T+  ++ AC+ L  L +G  +H   +K   E +  V+ ALIDM
Sbjct: 516 IDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDM 575

Query: 358 YAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           YAKC  +  +  +F +T   K  V WN I+A  + NG A++A+  F QM +E   PN  T
Sbjct: 576 YAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVT 635

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
             S+LPA A LA  ++ M  H  +I+ GFLS   V   LID+Y+KCG L  + K+F+E+ 
Sbjct: 636 FVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEM- 694

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
              KD V W+ +++GY +HGHG+ A++LF  M +S VQ + V+F S L AC H GL++EG
Sbjct: 695 -DHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEG 753

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
             +F+ M + +      +HY C+VDLLGRAG  DE    I+ MP++P   VWGALLG+C 
Sbjct: 754 RKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCR 813

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           +H NV+LGEVA   L +LEP NP ++V+LS +Y+   RW DA   R  M++ GL+K P  
Sbjct: 814 MHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGC 873

Query: 657 SLIEVRNILTA 667
           S +E++N + A
Sbjct: 874 SWVELKNKVHA 884



 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 188/603 (31%), Positives = 315/603 (52%), Gaps = 14/603 (2%)

Query: 34  QLHAFIITSGPLFTHLRSSLVRAYG--HVSNV-RILFDEMSERSSFLYNTVMKMYAQNGA 90
           Q+HA II SG    H  + L+  Y   H  ++ R +FD     S  L+N++++ Y ++  
Sbjct: 50  QIHAQIIVSGFKHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQ 109

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
            +++L+M+  M+  G   PD YT+  V+KACT     + G+  HG +   G + D F+G 
Sbjct: 110 YNEALEMYYCMVEKG-LEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGA 168

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            L+ MY   G++K AR+VFD M +  VV+WN +I+G  ++    EA+  F  M   GVEP
Sbjct: 169 GLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEP 228

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
              S++++ P    L  IE+ R IH  V   R   + A  N L+D+Y KCG V+ AR VF
Sbjct: 229 SSVSLLNLFPGICKLSNIELCRSIHGYVF--RRDFSSAVSNGLIDLYSKCGDVDVARRVF 286

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
           D+M ++D V+W +M+ GYA NG     L LF  M+   VR N ++  S   A +    L+
Sbjct: 287 DQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLE 346

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
           +G+ +H   ++Q ++ +++V T L+ MYAKC   + + Q+F     +  V W+AI+A  V
Sbjct: 347 KGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALV 406

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
             G   +A+ LF++M  + ++PN  TL S+LPA A L+ L+   +IHC+ ++    S + 
Sbjct: 407 QTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLS 466

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
             T L+ +Y+KCG   +A   F+   +  +DIV W+ +I GY   G    A+ +F ++  
Sbjct: 467 TGTALVSMYAKCGFFTAALTTFNR--MSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM--LENHQTCSRADHYTCIVDLLGRAGR 568
           S + P+  T    + AC+    LD+G  +   +  L     C   +    ++D+  + G 
Sbjct: 525 SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKN---ALIDMYAKCGS 581

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           L  A  L            W  ++ A + +G+ +   +++     LE  +P +   +S L
Sbjct: 582 LPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEA-ISSFHQMRLENFHPNSVTFVSVL 640

Query: 629 YSA 631
            +A
Sbjct: 641 PAA 643



 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 174/543 (32%), Positives = 279/543 (51%), Gaps = 6/543 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +   R +FD+M +R    +N ++   +Q+    +++  F  M  +G   P + +   +
Sbjct: 178 GDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVG-VEPSSVSLLNL 236

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
                 L+  +L  ++HG V     D  + V N LI +Y   G+V  AR+VFD M +   
Sbjct: 237 FPGICKLSNIELCRSIHGYVFRR--DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDD 294

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSW T+++GY  N    E L +FD M    V  +  S VS   A     ++E G+ IH  
Sbjct: 295 VSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGC 354

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
               R+  +I     L+ MY KCG   +A+ +F  +  RD+V W+++I      G    A
Sbjct: 355 ALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEA 414

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L LFQ MQ + ++PN +T+ S+L AC+ L  LK G+S+H +T+K +++ ++   TAL+ M
Sbjct: 415 LSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSM 474

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAKC     +   F R S +  V WN+++ G    G    A+++F ++ +  + P+  T+
Sbjct: 475 YAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTM 534

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
             ++PA A+L DL Q   IH  +++ GF S   V   LID+Y+KCGSL SA  +F++   
Sbjct: 535 VGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDF 594

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
             KD V W+VIIA Y  +GH + A+S F +M      PN VTF S L A ++     EG+
Sbjct: 595 T-KDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGM 653

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             F+  +      S       ++D+  + G+L  +  L   M  K T   W A+L    +
Sbjct: 654 -AFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDT-VSWNAMLSGYAV 711

Query: 598 HGN 600
           HG+
Sbjct: 712 HGH 714



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 150/492 (30%), Positives = 249/492 (50%), Gaps = 15/492 (3%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           YP ++ +C  L      + +H +++++GF     + + LI +Y  F +   AR VFD+  
Sbjct: 35  YPRLLSSCKHL---NPLLQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTP 90

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
             S + WN++I  Y ++    EAL ++  M++ G+EPD  +   VL AC     ++ G  
Sbjct: 91  NPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVW 150

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
            H  +    L +++     LVDMY K G +  AR VFD+M +RDVV W +MI G + + D
Sbjct: 151 FHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSED 210

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              A+  F+ MQ  GV P+S+++ +L      L  ++  RS+H +  +++      V   
Sbjct: 211 PCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSA--VSNG 268

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           LID+Y+KC  V ++ +VF +   +  V W  ++AG  HNG   + +ELF +M +  V  N
Sbjct: 269 LIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRIN 328

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
             +  S   A A   DL++   IH   ++    S + V+T L+ +Y+KCG  E A ++F 
Sbjct: 329 KVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLF- 387

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
              ++ +D+V WS IIA     G+ E A+SLF+EM    ++PN VT  S L AC+   LL
Sbjct: 388 -WGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLL 446

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
             G  +  F ++     S     T +V +  + G    A      M  +     W +L  
Sbjct: 447 KLGKSIHCFTVKADMD-SDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDI-VTWNSL-- 502

Query: 594 ACVIHGNVELGE 605
              I+G  ++G+
Sbjct: 503 ---INGYAQIGD 511


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/583 (39%), Positives = 352/583 (60%), Gaps = 3/583 (0%)

Query: 81  VMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT 140
           ++K YA++ +S DS   F   ++     P  Y +  ++K C D +  K G  +HG V+ +
Sbjct: 1   MLKGYAKS-SSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITS 59

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           GF  + F    ++ MY    ++  A  +FD M E  +V WNT+ISGY +N +AK AL++ 
Sbjct: 60  GFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLV 119

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
             M + G  PD  ++VS+LPA    + + +G  +H  V        +    ALVDMY KC
Sbjct: 120 LRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKC 179

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           GSV+ AR++FD M  R VV+W SMI+GY  +GD   A+ +FQ M  EGV+P ++T+   L
Sbjct: 180 GSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGAL 239

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
            AC+ L  L+RG+ +H    +  L+ +V V  +LI MY+KC  V ++  +F     K  V
Sbjct: 240 HACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLV 299

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            WNA++ G   NG   +A+  F +M    ++P+  T+ S++PA A L+  +QA  IH  +
Sbjct: 300 SWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLV 359

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           IR      V V T L+D+Y+KCG++ +A K+F    +  + ++ W+ +I GYG HG G+T
Sbjct: 360 IRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDM--MNARHVITWNAMIDGYGTHGLGKT 417

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560
           +V LFKEM +  ++PN++TF  AL ACSH GL++EGL  F  M +++      DHY  +V
Sbjct: 418 SVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMV 477

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620
           DLLGRAGRL++A+D I+ MP+KP   V+GA+LGAC IH NV+LGE AA  +F+L P++ G
Sbjct: 478 DLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGG 537

Query: 621 NYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            +VLL+ +Y+    W     VR +M++ GL+K P  SL+E+ N
Sbjct: 538 YHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGN 580



 Score =  261 bits (667), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 157/488 (32%), Positives = 264/488 (54%), Gaps = 21/488 (4%)

Query: 33  KQLHAFIITSG---PLFTHLRSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVMKMYA 86
           K++H  +ITSG    LF    + +V  Y     +++   +FD M ER    +NT++  YA
Sbjct: 50  KEIHGSVITSGFSWNLFA--MTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYA 107

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           QNG +  +L + L M   G + PD+ T   ++ A  D    ++G+A+HG VL  GF+   
Sbjct: 108 QNGFAKVALMLVLRMSEEG-HRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLV 166

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
            V   L+ MY   G V  AR +FD M   +VVSWN++I GY ++  A+ A+++F  ML  
Sbjct: 167 NVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDE 226

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           GV+P   +V+  L AC  L ++E G+ +H+LV   +L  +++  N+L+ MY KC  V+ A
Sbjct: 227 GVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIA 286

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
             +F  +  + +V+W +MI GYA NG V  AL  F  MQ   ++P+S T+ S++ A + L
Sbjct: 287 ADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAEL 346

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
              ++ + +H   I++ L+  V V TAL+DMYAKC  +  + ++F   + +  + WNA++
Sbjct: 347 SIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMI 406

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL----IR 442
            G   +GL + +VELF++M    ++PND T    L A +    +++ +   C+       
Sbjct: 407 DGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGL---CFFESMKKD 463

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH---GE 499
           YG    ++    ++D+  + G L  A     ++PIK   I V+  ++    +H +   GE
Sbjct: 464 YGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIK-PGITVYGAMLGACKIHKNVDLGE 522

Query: 500 TAV-SLFK 506
            A   +FK
Sbjct: 523 KAAFEIFK 530



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 139/494 (28%), Positives = 241/494 (48%), Gaps = 30/494 (6%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMS 71
           ++ ++   A T+ +     +H +++ +G     ++ ++LV  Y   G VS  R++FD M 
Sbjct: 134 IVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMD 193

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
            R+   +N+++  Y Q+G +  ++ +F  ML  G   P N T    + AC DL   + G 
Sbjct: 194 HRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEG-VQPTNVTVMGALHACADLGDLERGK 252

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H  V     D D  V N LI+MY     V  A  +F  +   ++VSWN +I GY +N 
Sbjct: 253 FVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNG 312

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
              EAL  F  M    ++PD  ++VSV+PA   L      + IH LV    L KN+    
Sbjct: 313 CVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMT 372

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           ALVDMY KCG+++ AR +FD M+ R V+TW +MI+GY  +G  + ++ LF+ M+   ++P
Sbjct: 373 ALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKP 432

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE--TALIDMYAKCNLVKLSFQ 369
           N +T    LSACS    ++ G      ++K++   E  ++   A++D+  +   +  ++ 
Sbjct: 433 NDITFLCALSACSHSGLVEEGLCFFE-SMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWD 491

Query: 370 VFARTSKKKTVP-WNAILAGC-VHNGL---ARKAVELFRQMLVEVVEPNDATLNSLLP-A 423
              +   K  +  + A+L  C +H  +    + A E+F+      + P+D   + LL   
Sbjct: 492 FIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFK------LNPDDGGYHVLLANI 545

Query: 424 YAILADLQQAMNIHCYLIRYGF-----LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           YA  +   +   +   + + G       S+VE+   +   YS   S   + KI+S +   
Sbjct: 546 YATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYL--- 602

Query: 479 DKDIVVWSVIIAGY 492
             + +V  +  AGY
Sbjct: 603 --ETLVDEIRAAGY 614


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/649 (36%), Positives = 365/649 (56%), Gaps = 7/649 (1%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH---VSNVRILFDEMSE 72
           +KL+Q     K +A  KQ+H  I+  G     ++ ++L++ Y H   V+  R LFD+ S 
Sbjct: 32  VKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSN 91

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           +S   +N ++  YA  G + ++  +F  +++     PD +T+  ++ AC+  A    G  
Sbjct: 92  KSVVSWNVMISGYAHRGLAQEAFNLFT-LMQQERLEPDKFTFVSILSACSSPAVLNWGRE 150

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H RV+  G   DT VGN LI+MY   G V+ AR+VFDAM     VSW TL   Y ++ Y
Sbjct: 151 IHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGY 210

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            +E+L  +  ML+  V P   + ++VL ACG L  +E G+ IH  +       ++    A
Sbjct: 211 GEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTA 270

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L  MY+KCG+  +AR VF+ +S RDV+ W +MI G+  +G +  A G F  M  EGV P+
Sbjct: 271 LTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPD 330

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
             T  ++LSAC+    L RG+ +HA   K  L  +V    ALI+MY+K   +K + QVF 
Sbjct: 331 RATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFD 390

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           R  K+  V W  +L          ++   F+QML + V+ N  T   +L A +    L+ 
Sbjct: 391 RMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKW 450

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              IH  +++ G L+ + V+  L+ +Y KCGS+E A ++F  + +  +D+V W+ +I G 
Sbjct: 451 GKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSM--RDVVTWNTLIGGL 508

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
           G +G G  A+  ++ M   G++PN  TF + L AC    L++EG   F FM +++     
Sbjct: 509 GQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPT 568

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
             HY C+VD+L RAG L EA D+I T+PLKP+ A+WGALL AC IH NVE+GE AA+   
Sbjct: 569 EKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCL 628

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +LEP+N G YV LS +Y+A   W+D   +R  M E+G++K P  S IE+
Sbjct: 629 KLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEI 677



 Score =  282 bits (721), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 171/528 (32%), Positives = 271/528 (51%), Gaps = 35/528 (6%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           D+Y Y  ++++C       +G  +H  +L  G   + ++ N L+ +Y + G V  AR++F
Sbjct: 27  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLF 86

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           D     SVVSWN +ISGY     A+EA  +F  M +  +EPD  + VS+L AC     + 
Sbjct: 87  DKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLN 146

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
            GR IH  V    L  +    NAL+ MY KCGSV +AR VFD M+ RD V+WT++   YA
Sbjct: 147 WGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYA 206

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            +G    +L  +  M  E VRP+ +T  ++LSAC SL  L++G+ +HA  ++     +V 
Sbjct: 207 ESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVR 266

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           V TAL  MY KC   K + +VF   S +  + WN ++ G V +G   +A   F +ML E 
Sbjct: 267 VSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEG 326

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           V P+ AT  ++L A A    L +   IH    + G +S V     LI++YSK GS++ A 
Sbjct: 327 VAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDAR 386

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS- 528
           ++F  +P   +D+V W+ ++  Y        + + FK+M+Q GV+ N++T+   L ACS 
Sbjct: 387 QVFDRMP--KRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSN 444

Query: 529 ----------HGGLLDEGL--DL--FNFMLENHQTCSRADH---------------YTCI 559
                     H  ++  GL  DL   N ++  +  C   +                +  +
Sbjct: 445 PVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTL 504

Query: 560 VDLLGRAGRLDEA---YDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
           +  LG+ GR  EA   Y+++++  ++P  A +  +L AC +   VE G
Sbjct: 505 IGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEG 552



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 125/395 (31%), Positives = 206/395 (52%), Gaps = 4/395 (1%)

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           V  ++ + G + D    V +L +C   K++ +G+ +HE +    +  N+   N L+ +Y 
Sbjct: 15  VLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYA 74

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
            CGSVNEAR +FD+ S + VV+W  MI+GYA  G  + A  LF LMQ E + P+  T  S
Sbjct: 75  HCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVS 134

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           +LSACSS   L  GR +H   ++  L  +  V  ALI MYAKC  V+ + +VF   + + 
Sbjct: 135 ILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRD 194

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
            V W  +      +G   ++++ +  ML E V P+  T  ++L A   LA L++   IH 
Sbjct: 195 EVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHA 254

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           +++   + S V VST L  +Y KCG+ + A ++F  +    +D++ W+ +I G+   G  
Sbjct: 255 HIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSY--RDVIAWNTMIRGFVDSGQL 312

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
           E A   F  M++ GV P+  T+T+ L AC+  G L  G ++     ++    S       
Sbjct: 313 EEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKD-GLVSDVRFGNA 371

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
           ++++  +AG + +A  +   MP +     W  LLG
Sbjct: 372 LINMYSKAGSMKDARQVFDRMPKRDV-VSWTTLLG 405


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/614 (38%), Positives = 354/614 (57%), Gaps = 6/614 (0%)

Query: 49  LRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN 108
           L S  VR +G++ +   +F +MSER  F +N ++  YA+ G   ++L ++  ML   E  
Sbjct: 138 LLSMFVR-FGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRML-WAEIR 195

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           P+ YT+P V+K C  ++    G  +H  V+  GF+ D  VGN LI MY+  G++  AR +
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           FD M +   +SWN +ISGYF+N    E L +F  M +  V+PD  ++ +V  AC  L   
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNE 315

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
            +GR +H  V     G +I+  N+L+ MY   G + EA  VF RM  +DVV+WT+MI   
Sbjct: 316 RLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASL 375

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
             +     A+  +++M+ EG+ P+ +T+ S+LSAC+ + +L  G  LH   IK  L   V
Sbjct: 376 VSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHV 435

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
           IV  +LIDMY+KC  V  + +VF   S K  V W +++ G   N  + +A+  FRQM  E
Sbjct: 436 IVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KE 494

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            ++PN  TL S+L A A +  L +   IH + +R G      +   ++D+Y +CG    A
Sbjct: 495 SMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPA 554

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
              F+    + KD+  W++++ GY   G  + AV LF +M++  + P+E+TF S L ACS
Sbjct: 555 LNQFNS---QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACS 611

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
             G++ EGL+ FN M   +       HY C+VD+LGRAG+LD+AYD I+ MP++P  A+W
Sbjct: 612 KSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIW 671

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
           GALL AC IH NVELGE+AAK +FE + ++ G Y+LL  LY+    W     VR +M E+
Sbjct: 672 GALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRER 731

Query: 649 GLRKAPAHSLIEVR 662
           GL   P  S +E++
Sbjct: 732 GLSADPGCSWVEIK 745



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 155/470 (32%), Positives = 248/470 (52%), Gaps = 10/470 (2%)

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           +GN L++M++ FG +  A  VF  M E  V SWN L+ GY K     EAL ++  ML + 
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           + P+  +  SVL  C  + +I  G+ IH  V       ++   NAL+ MYVKCG ++ AR
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNAR 253

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           ++FD+M +RD ++W +MI+GY  NG     L LF +M+   V P+ +T+ ++ SAC  L 
Sbjct: 254 MLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLD 313

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
             + GR +H + +K     ++ +  +LI MY+    ++ +  VF+R   K  V W A++A
Sbjct: 314 NERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIA 373

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
             V + L  KAVE ++ M +E + P++ TL S+L A A +  L   + +H   I+ G +S
Sbjct: 374 SLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVS 433

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            V VS  LID+YSKC  +++A ++F    I  K++V W+ +I G  ++     A+  F++
Sbjct: 434 HVIVSNSLIDMYSKCKCVDNALEVFRN--ISGKNVVSWTSLILGLRINNRSFEALLFFRQ 491

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGR 565
           M +S ++PN VT  S L AC+  G L  G ++    L   +T    D +    I+D+  R
Sbjct: 492 MKES-MKPNSVTLISVLSACARIGALMRGKEIHAHAL---RTGVGFDGFLPNAILDMYVR 547

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
            GR   A +   +   K     W  LL      G  +L       + ELE
Sbjct: 548 CGRKVPALNQFNSQ--KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 237/656 (36%), Positives = 374/656 (57%), Gaps = 8/656 (1%)

Query: 17  IKLVQQYAATKSIAGTKQLHA-FIITSGPLFTHLRSSLVRAYGHVSNV---RILFDEMSE 72
           + L++    +KS+   K++H  F+  +    + +   L R Y   + V   R LFDE+  
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
            S  L+N +++ YA NG    ++ ++  ML LG   P+ YTYP V+KAC+ L   + G+ 
Sbjct: 72  PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H    + G + D FV   L+  Y   G +  A+++F +M    VV+WN +I+G      
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGL 190

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
             +A+ +   M + G+ P+ +++V VLP  G  K +  G+ +H           +     
Sbjct: 191 CDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTG 250

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQFEGVRP 311
           L+DMY KC  +  AR +FD M  R+ V+W++MI GY  +  ++ AL LF Q++  + + P
Sbjct: 251 LLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDP 310

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
             +T+GS+L AC+ L  L RGR LH + IK     ++++   L+ MYAKC ++  + + F
Sbjct: 311 TPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFF 370

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
              + K +V ++AI++GCV NG A  A+ +FR M +  ++P+  T+  +LPA + LA LQ
Sbjct: 371 DXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQ 430

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
                H YLI  GF +   +   LID+YSKCG +  A ++F+ +     DIV W+ +I G
Sbjct: 431 HGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRM--DRHDIVSWNAMIIG 488

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           YG+HG G  A+ LF +++  G++P+++TF   L +CSH GL+ EG   F+ M  +     
Sbjct: 489 YGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVP 548

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
           R +H  C+VD+LGRAG +DEA+  IR MP +P   +W ALL AC IH N+ELGE  +K +
Sbjct: 549 RMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKI 608

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
             L PE+ GN+VLLS +YSA  RW DA ++R    + GL+K P  S IE+  I+ A
Sbjct: 609 QSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHA 664


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/614 (38%), Positives = 354/614 (57%), Gaps = 6/614 (0%)

Query: 49  LRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN 108
           L S  VR +G++ +   +F +MSER  F +N ++  YA+ G   ++L ++  ML   E  
Sbjct: 138 LLSMFVR-FGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRML-WAEIR 195

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           P+ YT+P V+K C  ++    G  +H  V+  GF+ D  VGN LI MY+  G++  AR +
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           FD M +   +SWN +ISGYF+N    E L +F  M +  V+PD  ++ +V  AC  L   
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNE 315

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
            +GR +H  V     G +I+  N+L+ MY   G + EA  VF RM  +DVV+WT+MI   
Sbjct: 316 RLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASL 375

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
             +     A+  +++M+ EG+ P+ +T+ S+LSAC+ + +L  G  LH   IK  L   V
Sbjct: 376 VSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHV 435

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
           IV  +LIDMY+KC  V  + +VF   S K  V W +++ G   N  + +A+  FRQM  E
Sbjct: 436 IVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KE 494

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            ++PN  TL S+L A A +  L +   IH + +R G      +   ++D+Y +CG    A
Sbjct: 495 SMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPA 554

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
              F+    + KD+  W++++ GY   G  + AV LF +M++  + P+E+TF S L ACS
Sbjct: 555 LNQFNS---QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACS 611

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
             G++ EGL+ FN M   +       HY C+VD+LGRAG+LD+AYD I+ MP++P  A+W
Sbjct: 612 KSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIW 671

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
           GALL AC IH NVELGE+AAK +FE + ++ G Y+LL  LY+    W     VR +M E+
Sbjct: 672 GALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRER 731

Query: 649 GLRKAPAHSLIEVR 662
           GL   P  S +E++
Sbjct: 732 GLSADPGCSWVEIK 745



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 155/470 (32%), Positives = 248/470 (52%), Gaps = 10/470 (2%)

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           +GN L++M++ FG +  A  VF  M E  V SWN L+ GY K     EAL ++  ML + 
Sbjct: 134 LGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           + P+  +  SVL  C  + +I  G+ IH  V       ++   NAL+ MYVKCG ++ AR
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNAR 253

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           ++FD+M +RD ++W +MI+GY  NG     L LF +M+   V P+ +T+ ++ SAC  L 
Sbjct: 254 MLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLD 313

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
             + GR +H + +K     ++ +  +LI MY+    ++ +  VF+R   K  V W A++A
Sbjct: 314 NERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIA 373

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
             V + L  KAVE ++ M +E + P++ TL S+L A A +  L   + +H   I+ G +S
Sbjct: 374 SLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVS 433

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            V VS  LID+YSKC  +++A ++F    I  K++V W+ +I G  ++     A+  F++
Sbjct: 434 HVIVSNSLIDMYSKCKCVDNALEVFRN--ISGKNVVSWTSLILGLRINNRSFEALLFFRQ 491

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGR 565
           M +S ++PN VT  S L AC+  G L  G ++    L   +T    D +    I+D+  R
Sbjct: 492 MKES-MKPNSVTLISVLSACARIGALMRGKEIHAHAL---RTGVGFDGFLPNAILDMYVR 547

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
            GR   A +   +   K     W  LL      G  +L       + ELE
Sbjct: 548 CGRKVPALNQFNSQ--KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 237/656 (36%), Positives = 374/656 (57%), Gaps = 8/656 (1%)

Query: 17  IKLVQQYAATKSIAGTKQLHA-FIITSGPLFTHLRSSLVRAYGHVSNV---RILFDEMSE 72
           + L++    +KS+   K++H  F+  +    + +   L R Y   + V   R LFDE+  
Sbjct: 12  LHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPN 71

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
            S  L+N +++ YA NG    ++ ++  ML LG   P+ YTYP V+KAC+ L   + G+ 
Sbjct: 72  PSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLAIEDGVE 130

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H    + G + D FV   L+  Y   G +  A+++F +M    VV+WN +I+G      
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGL 190

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
             +A+ +   M + G+ P+ +++V VLP  G  K +  G+ +H           +     
Sbjct: 191 CDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTG 250

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQFEGVRP 311
           L+DMY KC  +  AR +FD M  R+ V+W++MI GY  +  ++ AL LF Q++  + + P
Sbjct: 251 LLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDP 310

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
             +T+GS+L AC+ L  L RGR LH + IK     ++++   L+ MYAKC ++  + + F
Sbjct: 311 TPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFF 370

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
              + K +V ++AI++GCV NG A  A+ +FR M +  ++P+  T+  +LPA + LA LQ
Sbjct: 371 DEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQ 430

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
                H YLI  GF +   +   LID+YSKCG +  A ++F+ +     DIV W+ +I G
Sbjct: 431 HGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRM--DRHDIVSWNAMIIG 488

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           YG+HG G  A+ LF +++  G++P+++TF   L +CSH GL+ EG   F+ M  +     
Sbjct: 489 YGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVP 548

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
           R +H  C+VD+LGRAG +DEA+  IR MP +P   +W ALL AC IH N+ELGE  +K +
Sbjct: 549 RMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKI 608

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
             L PE+ GN+VLLS +YSA  RW DA ++R    + GL+K P  S IE+  I+ A
Sbjct: 609 QSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHA 664


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 244/651 (37%), Positives = 375/651 (57%), Gaps = 9/651 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPL----FTHLRSSLVRAYGHVSNVRILFDEMSERS 74
           LV  + A  +     QLH+ +  +G L    F    +SL      +   R +FDE    +
Sbjct: 7   LVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPN 66

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
             L+N+ ++ Y +     ++L++F  M+      PDN+T PI +KAC  L   +LG  +H
Sbjct: 67  VHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIH 126

Query: 135 GRVLITG-FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           G          D FVG+ L+ +Y   G++  A KVF+       V W ++++GY +N   
Sbjct: 127 GFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDP 186

Query: 194 KEALVVFDWM-LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
           +EAL +F  M +   V  D  ++VSV+ AC  L  ++ G  +H LV       ++   N+
Sbjct: 187 EEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNS 246

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+++Y K G    A  +F +M E+DV++W++MI  YA N     AL LF  M  +   PN
Sbjct: 247 LLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPN 306

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           S+T+ S L AC+    L+ G+ +H   + +  E +  V TALIDMY KC+    +  +F 
Sbjct: 307 SVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQ 366

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           R  KK  V W A+L+G   NG+A K++ +FR ML + ++P+   +  +L A + L   QQ
Sbjct: 367 RLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQ 426

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
           A+ +H Y++R GF S V V   LI++YSKCGSL  A K+F  + ++D  +V+WS +IA Y
Sbjct: 427 ALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRD--VVIWSSMIAAY 484

Query: 493 GMHGHGETAVSLFKEMVQ-SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           G+HG G  A+ +F +MV+ S V+PN VTF S L ACSH GL++EGL +F+ M+ ++Q   
Sbjct: 485 GIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRP 544

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
            ++H+  +VDLLGR G+L +A D+I  MP+     VWGALLGAC IH N+E+GE AAK L
Sbjct: 545 DSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNL 604

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           F L+P + G Y+LLS +Y+   +W +   +R  + E+GL+K    S++EVR
Sbjct: 605 FWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVR 655



 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 162/408 (39%), Positives = 242/408 (59%), Gaps = 2/408 (0%)

Query: 256  MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
            MYV    ++ A +VF+ +       W  MI G+A +G   ++L L+  M  +G++P+   
Sbjct: 761  MYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFA 820

Query: 316  IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
                L +C+ L  L+RG+ +H   +      ++ V+ AL+DMYAKC  ++ +  VF + +
Sbjct: 821  FPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMA 880

Query: 376  KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
             +  V W ++++G  HNG   + +  F  M    V PN  ++ S+L A   L  L++   
Sbjct: 881  VRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEW 940

Query: 436  IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
             H Y+I+ GF   + V+T ++D+YSKCGSL+ A  +F E     KD+V WS +IA YG+H
Sbjct: 941  FHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETA--GKDLVCWSAMIASYGIH 998

Query: 496  GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
            GHG  A+ LF +MV++GV+P+ VTFT  L ACSH GLL+EG   F  M E      +  +
Sbjct: 999  GHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSN 1058

Query: 556  YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
            Y C+VDLLGRAG+L EA DLI  MP++P  ++WG+LLGAC IH N++L E  A  LF L+
Sbjct: 1059 YACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLD 1118

Query: 616  PENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            P + G +VLLS +Y+A  RW + E VR +M  +G  K    SL+E  N
Sbjct: 1119 PVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDN 1166



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 204/370 (55%), Gaps = 4/370 (1%)

Query: 134  HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
            H ++   G   D+ +      MY++F  + AA  VF+ +       WN +I G+  +   
Sbjct: 740  HAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRF 799

Query: 194  KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
              +L ++  M++ G++PD  +    L +C  L +++ G++IH+ +       ++    AL
Sbjct: 800  LSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAAL 859

Query: 254  VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
            VDMY KCG +  ARLVFD+M+ RD+V+WTSMI+GYA NG     LG F LM+  GV PN 
Sbjct: 860  VDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNR 919

Query: 314  LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            ++I S+L AC +L  L++G   H++ I+   E +++V TA++DMY+KC  + L+  +F  
Sbjct: 920  VSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDE 979

Query: 374  TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
            T+ K  V W+A++A    +G  RKA++LF QM+   V P+  T   +L A +    L++ 
Sbjct: 980  TAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEG 1039

Query: 434  MNIHCYLIRYGFLSVVEVST--GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
              ++  L+   F+   ++S    ++D+  + G L  A  +   +P+ + D  +W  ++  
Sbjct: 1040 -KMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPV-EPDASIWGSLLGA 1097

Query: 492  YGMHGHGETA 501
              +H + + A
Sbjct: 1098 CRIHNNLDLA 1107



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 113/347 (32%), Positives = 182/347 (52%), Gaps = 14/347 (4%)

Query: 56   AYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
            ++  +    I+F+++    SFL+N +++ +A +G    SL+++  M+  G   PD + +P
Sbjct: 764  SFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKG-LKPDKFAFP 822

Query: 116  IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
              +K+C  L+  + G  +H  ++  G   D FV   L+ MY   G+++AAR VFD M   
Sbjct: 823  FALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVR 882

Query: 176  SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
             +VSW ++ISGY  N Y  E L  FD M  SGV P+  S++SVL ACG L  +  G   H
Sbjct: 883  DLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFH 942

Query: 236  ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
              V       +I    A++DMY KCGS++ AR +FD  + +D+V W++MI  Y ++G  R
Sbjct: 943  SYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGR 1002

Query: 296  NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
             A+ LF  M   GVRP+ +T   +LSACS    L+ G+        Q +  E ++   L 
Sbjct: 1003 KAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYF-----QLMTEEFVIARKLS 1057

Query: 356  DMYAKCNLVKLSFQVFARTSKKKTVP-------WNAILAGC-VHNGL 394
            +     +L+  + Q+       + +P       W ++L  C +HN L
Sbjct: 1058 NYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNL 1104



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 133/270 (49%), Gaps = 8/270 (2%)

Query: 333  RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
            +  HA      L+ +  + T    MY   N +  +  VF       +  WN ++ G   +
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 393  GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
            G    ++EL+ +M+ + ++P+       L + A L+DLQ+   IH +L+  G  + + V 
Sbjct: 797  GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVD 856

Query: 453  TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
              L+D+Y+KCG +E+A  +F ++ +  +D+V W+ +I+GY  +G+    +  F  M  SG
Sbjct: 857  AALVDMYAKCGDIEAARLVFDKMAV--RDLVSWTSMISGYAHNGYNSETLGFFDLMRSSG 914

Query: 513  VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLD 570
            V PN V+  S L AC + G L +G    ++++   QT    D    T I+D+  + G LD
Sbjct: 915  VIPNRVSILSVLLACGNLGALRKGEWFHSYVI---QTGFEFDILVATAIMDMYSKCGSLD 971

Query: 571  EAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             A  L      K     W A++ +  IHG+
Sbjct: 972  LARCLFDETAGKDL-VCWSAMIASYGIHGH 1000


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/605 (36%), Positives = 355/605 (58%), Gaps = 6/605 (0%)

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
           R +FD++ + S  L+N +++ YA +G    S+ ++L ML+LG   P N+T+P ++KAC+ 
Sbjct: 61  RHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLG-VTPTNFTFPFLLKACSS 119

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM--WEHSVVSWN 181
           L   +LG  +H    I G  MD +V   L+ MY   G +  A+ +F+++   +  +V+WN
Sbjct: 120 LQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWN 179

Query: 182 TLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG 241
            +I+ +  +A   + +     M ++GV P+ +++VS+LP  G    +  G+ IH      
Sbjct: 180 AMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRN 239

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
               N+    AL+DMY KC  +  AR +F+ +++++ V W++MI GY L+  + +AL L+
Sbjct: 240 FFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALY 299

Query: 302 Q-LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
             ++   G+ P   T+ ++L AC+ L  LKRG+ LH   IK  ++ +  V  +LI MYAK
Sbjct: 300 DDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAK 359

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           C ++  +         K TV ++AI++GCV NG A KA+ +FRQM    + P   T+ +L
Sbjct: 360 CGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIAL 419

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           LPA + LA LQ     H Y +  GF +   +   +ID+YSKCG +  + +IF  +  +++
Sbjct: 420 LPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRM--QNR 477

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
           DI+ W+ +I GYG+HG    A+SLF+E+   G++P++VT  + L ACSH GL+ EG   F
Sbjct: 478 DIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWF 537

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           + M +N     R  HY C+VDLL RAG LDEAY  I+ MP  P   +WGALL AC  H N
Sbjct: 538 SSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKN 597

Query: 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           +E+GE  +K +  L PE  GN+VL+S +YS+V RW DA  +R +    G +K+P  S +E
Sbjct: 598 IEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVE 657

Query: 661 VRNIL 665
           +  ++
Sbjct: 658 ISGVI 662



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 138/449 (30%), Positives = 241/449 (53%), Gaps = 11/449 (2%)

Query: 156 YMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASV 215
           +++  E++ AR VFD + + SVV WN +I  Y  +   ++++ ++  ML+ GV P   + 
Sbjct: 51  HISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTF 110

Query: 216 VSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS- 274
             +L AC  L+ +++GR+IH       L  ++    AL+ MY KCG + +A+ +F+ +S 
Sbjct: 111 PFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISH 170

Query: 275 -ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
            +RD+V W +MI  ++ +      +     MQ  GV PNS T+ S+L        L +G+
Sbjct: 171 QDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGK 230

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
           ++HA+ I+      V+++TAL+DMYAKC+L+  + ++F   +KK  V W+A++ G V + 
Sbjct: 231 AIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHD 290

Query: 394 LARKAVELFRQML-VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
               A+ L+  ML +  + P  ATL ++L A A L DL++   +HC++I+ G      V 
Sbjct: 291 SISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVG 350

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
             LI +Y+KCG +++A     E+  KD   V +S II+G   +G+ E A+ +F++M  SG
Sbjct: 351 NSLISMYAKCGIMDNAVGFLDEMIAKDT--VSYSAIISGCVQNGYAEKALLIFRQMQSSG 408

Query: 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC--IVDLLGRAGRLD 570
           + P   T  + L ACSH   L  G     + +    T    D   C  I+D+  + G++ 
Sbjct: 409 IAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFT---NDTSICNAIIDMYSKCGKIT 465

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            + ++   M  +   + W  ++    IHG
Sbjct: 466 ISREIFDRMQNRDIIS-WNTMIIGYGIHG 493



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 176/368 (47%), Gaps = 15/368 (4%)

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
           R+  + AA   L   ++    +  AR VFD++ +  VV W  MI  YA +G  + ++ L+
Sbjct: 36  RVSDSDAAATQLARYHISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLY 95

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
             M   GV P + T   LL ACSSL  L+ GR +H       L  ++ V TAL+ MYAKC
Sbjct: 96  LHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKC 155

Query: 362 NLVKLSFQVFARTS--KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
             +  +  +F   S   +  V WNA++A    + L  + +    QM    V PN +TL S
Sbjct: 156 GHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVS 215

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           +LP       L Q   IH Y IR  F   V + T L+D+Y+KC  L  A KIF+   +  
Sbjct: 216 ILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNT--VNK 273

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ-SGVQPNEVTFTSALHACSHGGLLDEGLD 538
           K+ V WS +I GY +H     A++L+ +M+   G+ P   T  + L AC+    L  G  
Sbjct: 274 KNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKK 333

Query: 539 LFNFMLENHQTCSRADHYTCI----VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           L   M++     S  D  T +    + +  + G +D A   +  M  K T   + A++  
Sbjct: 334 LHCHMIK-----SGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDT-VSYSAIISG 387

Query: 595 CVIHGNVE 602
           CV +G  E
Sbjct: 388 CVQNGYAE 395



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 125/246 (50%), Gaps = 6/246 (2%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           K+LH  +I SG  L T + +SL+  Y   G + N     DEM  + +  Y+ ++    QN
Sbjct: 332 KKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQN 391

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G +  +L +F  M   G   P   T   ++ AC+ LA  + G   HG  ++ GF  DT +
Sbjct: 392 GYAEKALLIFRQMQSSG-IAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSI 450

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N +I MY   G++  +R++FD M    ++SWNT+I GY  +    EAL +F  +   G+
Sbjct: 451 CNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGL 510

Query: 209 EPDCASVVSVLPACGYLKEIEMGRM-IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           +PD  ++++VL AC +   +  G+     +     +   +A +  +VD+  + G+++EA 
Sbjct: 511 KPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAY 570

Query: 268 LVFDRM 273
               RM
Sbjct: 571 TFIQRM 576


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/654 (36%), Positives = 372/654 (56%), Gaps = 9/654 (1%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAY---GHVSNVRILFDEMS 71
           ++ ++Q       ++  +Q HA ++ +G  +   L + L+  Y   G   + + +F ++ 
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
              S  +N +++ +   G    +L  +  ML  G   PD YT+P VIKAC  L    LG 
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTL-PDKYTFPYVIKACGGLNSVALGR 167

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H ++   GF++D FVG+ LI  Y   G +  AR +FD M     V WN +++GY KN 
Sbjct: 168 VVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNG 227

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV--AGGRLGKNIAA 249
               A  VF  M ++   P+  +   VL  C     I  G  +H LV  +G  +   +A 
Sbjct: 228 DWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVAN 287

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
             AL+D+Y KC  V  AR +FD+ +  D+V  T+MI+GY LNG   NAL +F+ +  E +
Sbjct: 288 TFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERM 347

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
           R NS+T+ S+L AC+ L  L  G+ LH   +K        V +A++DMYAKC  + L+ Q
Sbjct: 348 RANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQ 407

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
            F   S K  V WN+++  C  NG   +A++LFRQM +   + +  ++++ L A A L  
Sbjct: 408 TFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPA 467

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L     IH +++R  F S +   + LID+YSKCG+L+ A ++F  +  ++K+ V W+ II
Sbjct: 468 LHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTM--EEKNEVSWNSII 525

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           A YG HG  + +++LF  M+  G+QP+ VTF + + AC H G +DEG+  F  M E    
Sbjct: 526 AAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHYFRCMTEELGI 585

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
            +R +HY C+VDL GRAGRL+EA+ +I +MP  P   VWG LLGAC +HGNVEL EVA++
Sbjct: 586 MARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHGNVELAEVASR 645

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            LF+L+P+N G YVLLS +++   +W+    +R +M E+G++K P  S I+V N
Sbjct: 646 NLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSWIDVNN 699


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/669 (36%), Positives = 377/669 (56%), Gaps = 17/669 (2%)

Query: 6   HHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGP-----LFTHLRSSLVRAYGHV 60
           H  L +  +L++KL++   +  SI+   QLH+  + +G      + T L     R Y  +
Sbjct: 132 HEWLMERRNLLVKLLETCCSKLSIS---QLHSQCLKAGLVHDSFIVTKLNVLYAR-YASI 187

Query: 61  SNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG----EYNPDNYTYPI 116
            +   LF E   R+ +L+N +++ Y   G   ++L +F  M  +     E  PDNY+  I
Sbjct: 188 HHAHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVSI 247

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
            +K+C  L    LG  +HG +     D D FVG+ LI +Y   G++  A KVF    +  
Sbjct: 248 ALKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPD 307

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIH 235
           VV W ++ISGY ++   + AL  F  M+ S  V PD  ++VSV  AC  L   ++GR +H
Sbjct: 308 VVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVH 367

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
             V    L   +   N+L+ +Y K GS+  A  +F  MS++D+++W++M+  YA NG   
Sbjct: 368 GFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAET 427

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
           + L LF  M  + ++PN +T+ S+L AC+ +  L+ G  +H   +    E E  V TAL+
Sbjct: 428 DVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEMETTVSTALM 487

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           DMY KC   + +  +F R  KK  + W  + +G   NG+  +++ +FR ML     P+  
Sbjct: 488 DMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAI 547

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
            L  +L   + L  LQQA+ +H ++I+ GF +   +   LI++Y+KC S+E A+K+F  +
Sbjct: 548 ALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIEVYAKCSSIEDANKVFKGM 607

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV-QSGVQPNEVTFTSALHACSHGGLLD 534
             KD  +V WS IIA YG HG GE A+ LF +M   S  +PN VTF S L ACSH GL+ 
Sbjct: 608 TYKD--VVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVTFISILSACSHSGLIK 665

Query: 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           EG+++F+ M+  ++    ++HY  +VDLLGR G LD A D+I  MP++    +WGALLGA
Sbjct: 666 EGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVINNMPMQAGPDIWGALLGA 725

Query: 595 CVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP 654
           C IH N+++GEVAAK LF L+P + G Y+LLS +YS    W  A  +R ++ EK L K  
Sbjct: 726 CRIHQNIKMGEVAAKNLFSLDPNHAGYYILLSNIYSVDENWHSATKLRRLVKEKRLNKIV 785

Query: 655 AHSLIEVRN 663
             S++E++N
Sbjct: 786 GQSVVELKN 794


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/571 (40%), Positives = 330/571 (57%), Gaps = 3/571 (0%)

Query: 94  SLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLI 153
           +L  F  M       P   T+  ++K C   A    G A+H ++   G   +      L 
Sbjct: 208 ALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALA 267

Query: 154 AMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL-VVFDWMLKSGVEPDC 212
            MY        AR+VFD M     V+WN L++GY +N  A+ A+ +V     + G  PD 
Sbjct: 268 NMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDA 327

Query: 213 ASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR 272
            ++VSVLPAC   + +   R +H     G   + +    A++D+Y KCG+V+ AR VFD 
Sbjct: 328 VTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDG 387

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
           M +R+ V+W +MI GYA NGD   AL LF+ M  EGV    +++ + L AC  L +L  G
Sbjct: 388 MQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEG 447

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           R +H   ++  LE  V V  ALI MY KC    L+ QVF     K  V WNA++ GC  N
Sbjct: 448 RRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQN 507

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
           G +  AV LF +M +E V+P+  TL S++PA A ++D  QA  IH Y IR      V V 
Sbjct: 508 GSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVL 567

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
           T LID+Y+KCG +  A  +F+    +D+ ++ W+ +I GYG HG G+ AV LF+EM  SG
Sbjct: 568 TALIDMYAKCGRVSIARSLFNS--ARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSG 625

Query: 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572
             PNE TF S L ACSH GL+DEG + F+ M E++      +HY  +VDLLGRAG+L EA
Sbjct: 626 KVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEA 685

Query: 573 YDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAV 632
           +  I+ MP++P  +V+GA+LGAC +H NVEL E +A+ +FELEPE    +VLL+ +Y+  
Sbjct: 686 WSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANA 745

Query: 633 RRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
             WKD   VR  M++KGL+K P  S+++++N
Sbjct: 746 SLWKDVARVRTAMEKKGLQKTPGWSIVQLKN 776



 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 159/505 (31%), Positives = 252/505 (49%), Gaps = 12/505 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSS-LVRAYGHV---SNVRILFDEMSERS 74
           L++  AA   +A  + +HA +   G     L ++ L   Y       + R +FD M  R 
Sbjct: 231 LLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARD 290

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
              +N ++  YA+NG +  ++ M + M       PD  T   V+ AC D         +H
Sbjct: 291 RVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVH 350

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
              +  GFD    V   ++ +Y   G V +ARKVFD M + + VSWN +I GY +N  A 
Sbjct: 351 AFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDAT 410

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           EAL +F  M+  GV+    SV++ L ACG L  ++ GR +HEL+    L  N+   NAL+
Sbjct: 411 EALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALI 470

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
            MY KC   + A  VFD +  +  V+W +MI G   NG   +A+ LF  MQ E V+P+S 
Sbjct: 471 TMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSF 530

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T+ S++ A + +    + R +H ++I+ +L+ +V V TALIDMYAKC  V ++  +F   
Sbjct: 531 TLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSA 590

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--YAILADLQQ 432
             +  + WNA++ G   +G  + AVELF +M      PN+ T  S+L A  +A L D  Q
Sbjct: 591 RDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQ 650

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
                     YG    +E    ++D+  + G L  A     ++P+ +  I V+  ++   
Sbjct: 651 EY-FSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPM-EPGISVYGAMLGAC 708

Query: 493 GMHGH----GETAVSLFKEMVQSGV 513
            +H +     E+A  +F+   + GV
Sbjct: 709 KLHKNVELAEESAQRIFELEPEEGV 733



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/476 (25%), Positives = 237/476 (49%), Gaps = 23/476 (4%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMS 71
           ++ ++   A  +++   +++HAF +  G     ++ ++++  Y   G V + R +FD M 
Sbjct: 330 LVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQ 389

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
           +R+S  +N ++K YA+NG + ++L +F  M+  G  +  + +    + AC +L +   G 
Sbjct: 390 DRNSVSWNAMIKGYAENGDATEALALFKRMVGEG-VDVTDVSVLAALHACGELGFLDEGR 448

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H  ++  G + +  V N LI MY        A +VFD +   + VSWN +I G  +N 
Sbjct: 449 RVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNG 508

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
            +++A+ +F  M    V+PD  ++VS++PA   + +    R IH       L +++    
Sbjct: 509 SSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLT 568

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           AL+DMY KCG V+ AR +F+   +R V+TW +MI+GY  +G  + A+ LF+ M+  G  P
Sbjct: 569 ALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVP 628

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE--TALIDMYAKCNLVKLSFQ 369
           N  T  S+LSACS    +  G+   + ++K++   E  +E    ++D+  +   +  ++ 
Sbjct: 629 NETTFLSVLSACSHAGLVDEGQEYFS-SMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWS 687

Query: 370 VFARTSKKKTVP-WNAILAGC-VHNGLARKAVELFRQMLVEV--VEPNDATLNSLLP-AY 424
              +   +  +  + A+L  C +H     K VEL  +    +  +EP +   + LL   Y
Sbjct: 688 FIQKMPMEPGISVYGAMLGACKLH-----KNVELAEESAQRIFELEPEEGVYHVLLANIY 742

Query: 425 AILADLQQAMNIHCYLIRYGFL-----SVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           A  +  +    +   + + G       S+V++   +   YS   + + A  I++ +
Sbjct: 743 ANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARL 798


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/662 (36%), Positives = 375/662 (56%), Gaps = 14/662 (2%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRS--SLVRAYGH---VSNV 63
           +  T +L + L+ + +    +    Q HA II +G L   L +   L     H   +   
Sbjct: 6   IASTRNLFLTLINRVSTLHQL---NQTHAQIILNG-LHNDLVTVTKLTHKLSHLKAIDQA 61

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
            +LF  +     FLYN +++ ++ N +   ++ ++  + +     PDN+TY  VI   + 
Sbjct: 62  SLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASS 121

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
           L    L  A     ++ GF  D FVG+ ++A Y  F  V AARKVFD M E   V WNT+
Sbjct: 122 LGLGLLLHAHS---IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTM 178

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243
           +SG  KN+   EA+++F  M+K G+  D  +V +VLP    L+++ +G  I  L      
Sbjct: 179 VSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGF 238

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
             +      L  +Y KCG +  ARL+F ++ + D+V++ +MI+GY  N +  +++ LF+ 
Sbjct: 239 HSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKE 298

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           +   G + NS +I  L+       +L   R +H +  K  +     V TAL  +Y++ N 
Sbjct: 299 LLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNE 358

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           ++ +  +F  +S+K    WNA+++G   NGL  KA+ LF++M    V PN  T+ S+L A
Sbjct: 359 IESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSA 418

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
            A L  L     +H  + R  F S + VST LID+Y+KCGS+  A ++FS +P  +K+ V
Sbjct: 419 CAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMP--EKNAV 476

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ +I+GYG+HG+G  A++LF EM+ S V P  VTF S L+ACSH GL+ EG ++F  M
Sbjct: 477 TWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSM 536

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
           + +H      +HY C+VDLLGRAG LD+A D IR MP++P   VWGALLGAC+IH +  L
Sbjct: 537 VHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANL 596

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
             +A+  LFEL+P+N G YVLLS +YSA + + +A +VR V+  + L K P  +LIEV N
Sbjct: 597 ARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVAN 656

Query: 664 IL 665
            L
Sbjct: 657 TL 658


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/648 (37%), Positives = 365/648 (56%), Gaps = 60/648 (9%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERS 74
           ++Q  A  KSI   +++H+ I ++   +   L S LV  Y   G +   R +FD+++   
Sbjct: 107 VLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEK 166

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
            FL+N +M  YA+ G   +SL +F  M                         R+LGI   
Sbjct: 167 VFLWNLLMNGYAKIGNFRESLSLFKRM-------------------------RELGIR-- 199

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
                                      V++ARK+FD + +  V+SWN++ISGY  N  ++
Sbjct: 200 --------------------------RVESARKLFDELGDRDVISWNSMISGYVSNGLSE 233

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           + L +F+ ML  G+  D A++VSV+  C     + +GR +H        GK +   N L+
Sbjct: 234 KGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLL 293

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           DMY K G++N A  VF+ M ER VV+WTSMI GYA  G    ++ LF  M+ EG+ P+  
Sbjct: 294 DMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIF 353

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           TI ++L AC+    L+ G+ +H +  +  ++ ++ V  AL+DMYAKC  +  +  VF+  
Sbjct: 354 TITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEM 413

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
             K  V WN ++ G   N L  +A+ LF +M     +PN  T+  +LPA A LA L++  
Sbjct: 414 QVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASLAALERGQ 472

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            IH +++R GF     V+  L+D+Y KCG+L  A  +F  IP  +KD+V W+V+IAGYGM
Sbjct: 473 EIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIP--EKDLVSWTVMIAGYGM 530

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           HG+G  A++ F EM  SG++P+EV+F S L+ACSH GLLDEG   FN M  N     +++
Sbjct: 531 HGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSE 590

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HY CIVDLL RAG L +AY  I+ MP++P   +WGALL  C I+ +V+L E  A+ +FEL
Sbjct: 591 HYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFEL 650

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           EPEN G YVLL+ +Y+   +W++ + +R+ +  +GLRK P  S IE++
Sbjct: 651 EPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIK 698



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 211/449 (46%), Gaps = 58/449 (12%)

Query: 203 MLKSGVEPDCA--SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           ++    +PD    +  SVL  C  LK I+ GR IH ++    +  +    + LV MYV C
Sbjct: 90  LINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTC 149

Query: 261 GSVNEARLVFDR------------------------------------------------ 272
           G + E R +FD+                                                
Sbjct: 150 GDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFD 209

Query: 273 -MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKR 331
            + +RDV++W SMI+GY  NG     L LF+ M   G+  +  T+ S+++ CS+   L  
Sbjct: 210 ELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLL 269

Query: 332 GRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVH 391
           GR+LH + IK +   E+ +   L+DMY+K   +  + QVF    ++  V W +++AG   
Sbjct: 270 GRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAR 329

Query: 392 NGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEV 451
            GL+  +V LF +M  E + P+  T+ ++L A A    L+   ++H Y+      S + V
Sbjct: 330 EGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFV 389

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
           S  L+D+Y+KCGS+  AH +FSE+ +  KDIV W+ +I GY  +     A++LF EM Q 
Sbjct: 390 SNALMDMYAKCGSMGDAHSVFSEMQV--KDIVSWNTMIGGYSKNSLPNEALNLFVEM-QY 446

Query: 512 GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY-TCIVDLLGRAGRLD 570
             +PN +T    L AC+    L+ G ++   +L N  +  R  H    +VD+  + G L 
Sbjct: 447 NSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDR--HVANALVDMYLKCGALG 504

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            A  L   +P K     W  ++    +HG
Sbjct: 505 LARLLFDMIPEKDL-VSWTVMIAGYGMHG 532


>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g01580
 gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/612 (37%), Positives = 364/612 (59%), Gaps = 7/612 (1%)

Query: 55  RAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTY 114
           R +    + R +F EM++RS + +NT++K  ++     + L  F  M R  E  PDN+T 
Sbjct: 5   RKFSSSVDARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFR-DEEKPDNFTL 63

Query: 115 PIVIKACTDLAWRKLGIALHGRVLI-TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           P+ +KAC +L     G  +HG V        D +VG+ LI MY+  G +  A ++FD + 
Sbjct: 64  PVALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELE 123

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWM-LKSGVEPDCASVVSVLPACGYLKEIEMGR 232
           +  +V+W++++SG+ KN    +A+  F  M + S V PD  ++++++ AC  L    +GR
Sbjct: 124 KPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGR 183

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            +H  V       +++  N+L++ Y K  +  EA  +F  ++E+DV++W+++I  Y  NG
Sbjct: 184 CVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNG 243

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
               AL +F  M  +G  PN  T+  +L AC++ + L++GR  H   I++ LE EV V T
Sbjct: 244 AAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVST 303

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV-VE 411
           AL+DMY KC   + ++ VF+R  +K  V W A+++G   NG+A +++E F  ML+E    
Sbjct: 304 ALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTR 363

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           P+   +  +L + + L  L+QA   H Y+I+YGF S   +   L+++YS+CGSL +A K+
Sbjct: 364 PDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKV 423

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG-VQPNEVTFTSALHACSHG 530
           F+ I +KD   VVW+ +I GYG+HG G  A+  F  MV+S  V+PNEVTF S L ACSH 
Sbjct: 424 FNGIALKD--TVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHA 481

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           GL+ EGL +F  M+ +++     +HY  +VDLLGR G LD A ++ + MP  PT  + G 
Sbjct: 482 GLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGT 541

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LLGAC IH N E+ E  AK LFELE  + G Y+L+S +Y     W++ E +R+ + ++G+
Sbjct: 542 LLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGI 601

Query: 651 RKAPAHSLIEVR 662
           +K  A SLIE+R
Sbjct: 602 KKGLAESLIEIR 613



 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 146/515 (28%), Positives = 267/515 (51%), Gaps = 16/515 (3%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLR--SSLVRAY---G 58
           P + TLP         ++     + +   + +H F+     L + L   SSL+  Y   G
Sbjct: 58  PDNFTLPVA-------LKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCG 110

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
            +     +FDE+ +     +++++  + +NG+ + +++ F  M+   +  PD  T   ++
Sbjct: 111 RMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLV 170

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
            ACT L+  +LG  +HG V+  GF  D  + N L+  Y      K A  +F  + E  V+
Sbjct: 171 SACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVI 230

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           SW+T+I+ Y +N  A EAL+VF+ M+  G EP+ A+V+ VL AC    ++E GR  HEL 
Sbjct: 231 SWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELA 290

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               L   +    ALVDMY+KC S  EA  VF R+  +DVV+W ++I+G+ LNG    ++
Sbjct: 291 IRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSI 350

Query: 299 GLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
             F +M  E   RP+++ +  +L +CS L +L++ +  H++ IK   +    +  +L+++
Sbjct: 351 EEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVEL 410

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV-VEPNDAT 416
           Y++C  +  + +VF   + K TV W +++ G   +G   KA+E F  M+    V+PN+ T
Sbjct: 411 YSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVT 470

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
             S+L A +    + + + I   ++  Y     +E    L+D+  + G L++A +I   +
Sbjct: 471 FLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRM 530

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           P      ++   ++    +H +GE A ++ K++ +
Sbjct: 531 PFSPTPQIL-GTLLGACRIHQNGEMAETVAKKLFE 564


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/586 (38%), Positives = 350/586 (59%), Gaps = 5/586 (0%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N+V+    QNG + ++L +F GM   G +  ++YT   V++ C +L    LG  LH  +
Sbjct: 235 WNSVVSGCVQNGRTLEALALFRGMQSAG-FPMNSYTSVAVLQVCAELGLLSLGRELHAAL 293

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           L  G +++    N L+ MY  +G V +A +VF  + E   +SWN+++S Y +N++  EA+
Sbjct: 294 LKCGSELNIQC-NALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAI 352

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
             F  ML+ G +PD A VVS+  A G+L  +  GR  H      RL  ++   N L+DMY
Sbjct: 353 DFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMY 412

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
           +KCGS+  +  VF+ M  RD ++WT+++  +A +     AL +   +Q EG+  +S+ IG
Sbjct: 413 IKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIG 472

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           S+L  C  L  +   + +H + I+  L  ++I+E  LID+Y +C     S  +F R  KK
Sbjct: 473 SILETCCGLKSISLLKQVHCYAIRNGL-LDLILENRLIDIYGECGEFDHSLNLFQRVEKK 531

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V W +++  C +NG    AV LF +M    ++P+   L S+L A A L+ L +   +H
Sbjct: 532 DIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVH 591

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            +LIR  F     V + L+D+YS CGS+  A ++F     K KD+V+W+ +I   GMHGH
Sbjct: 592 GFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERA--KCKDVVLWTAMINATGMHGH 649

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
           G+ A+ LFK M+Q+G+ P+ V+F + L+ACSH  L++EG    + M+  ++     +HY 
Sbjct: 650 GKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYA 709

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617
           C+VD+LGR+G+ +EAY+ I+TMP+ P  AVW ALLGAC +H N  L  VAA  L ELEP+
Sbjct: 710 CVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPD 769

Query: 618 NPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           NPGNY+L+S +++ + +W +A+  R  M E+GLRK PA S IE+ N
Sbjct: 770 NPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGN 815



 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 189/620 (30%), Positives = 295/620 (47%), Gaps = 54/620 (8%)

Query: 33  KQLHAFIITSGPLFTH----LRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMY 85
           +Q+HA  +T+G L       L + LV  YG    V + R LF+ M  R+ F +N ++  Y
Sbjct: 77  RQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAY 136

Query: 86  AQNGASHDSLKMFLGMLRLGE---YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
             +G++ ++++++ G +R        PD  T   V+KAC      + G  +HG  +  G 
Sbjct: 137 LSSGSAGEAMRVY-GAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGL 195

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS--VVSWNTLISGYFKNAYAKEALVVF 200
           D  T V N LI MY   G + +A +VF+ + + +  V SWN+++SG  +N    EAL +F
Sbjct: 196 DKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALF 255

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE--LVAGGRLGKNIAAWNALVDMYV 258
             M  +G   +  + V+VL  C  L  + +GR +H   L  G  L  NI   NAL+ MY 
Sbjct: 256 RGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSEL--NIQC-NALLVMYA 312

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           K G V+ A  VF +++E+D ++W SM++ Y  N     A+  F  M   G +P+   + S
Sbjct: 313 KYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVS 372

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           L SA   L  L  GR  HA+ IKQ L  ++ V   L+DMY KC  ++ S +VF     + 
Sbjct: 373 LSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRD 432

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
            + W  ILA    +    +A+E+  ++  E +  +   + S+L     L  +     +HC
Sbjct: 433 HISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHC 492

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           Y IR G L ++ +   LIDIY +CG  + +  +F    ++ KDIV W+ +I     +G  
Sbjct: 493 YAIRNGLLDLI-LENRLIDIYGECGEFDHSLNLFQR--VEKKDIVSWTSMINCCTNNGRL 549

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF------NFMLENHQTCSR 552
             AV LF EM ++ +QP+ V   S L A +    L +G  +       NF +E     S 
Sbjct: 550 NGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSL 609

Query: 553 ADHY------------------------TCIVDLLGRAGRLDEAYDLIRTM---PLKPTH 585
            D Y                        T +++  G  G   +A DL + M    L P H
Sbjct: 610 VDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDH 669

Query: 586 AVWGALLGACVIHGNVELGE 605
             + ALL AC     VE G+
Sbjct: 670 VSFLALLYACSHSKLVEEGK 689



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 158/521 (30%), Positives = 250/521 (47%), Gaps = 43/521 (8%)

Query: 130 GIALHGRVLITGF---DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
           G  +H   + TG    D D F+   L+ MY   G V  AR++F+ M   +V SWN L+  
Sbjct: 76  GRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGA 135

Query: 187 YFKNAYAKEALVVFDWMLKS---GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243
           Y  +  A EA+ V+  M  S   G  PD  ++ SVL ACG   +   G  +H L     L
Sbjct: 136 YLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGL 195

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSE--RDVVTWTSMINGYALNGDVRNALGLF 301
            K+    NAL+ MY KCG ++ A  VF+ + +  RDV +W S+++G   NG    AL LF
Sbjct: 196 DKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALF 255

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
           + MQ  G   NS T  ++L  C+ L  L  GR LHA  +K   E  +    AL+ MYAK 
Sbjct: 256 RGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQC-NALLVMYAKY 314

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
             V  + +VF + ++K  + WN++L+  V N    +A++ F +ML    +P+ A + SL 
Sbjct: 315 GRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLS 374

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            A   L+ L      H Y I+    + ++V   L+D+Y KCGS+E + K+F  + I+D  
Sbjct: 375 SALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDH- 433

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL---- 537
            + W+ I+A +        A+ +  E+ + G+  + +   S L  C   GL    L    
Sbjct: 434 -ISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCC--GLKSISLLKQV 490

Query: 538 -------DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
                   L + +LEN            ++D+ G  G  D + +L + +  K     W +
Sbjct: 491 HCYAIRNGLLDLILENR-----------LIDIYGECGEFDHSLNLFQRVEKKDI-VSWTS 538

Query: 591 LLGACVIHGNVELGEVAAKWLF-ELEPEN--PGNYVLLSKL 628
           ++  C  +G +      A +LF E++  N  P +  L+S L
Sbjct: 539 MINCCTNNGRLN----GAVFLFTEMQKANIQPDSVALVSIL 575



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 122/256 (47%), Gaps = 5/256 (1%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVR---ILFDEMS 71
           ++  +++     KSI+  KQ+H + I +G L   L + L+  YG          LF  + 
Sbjct: 470 MIGSILETCCGLKSISLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFDHSLNLFQRVE 529

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
           ++    + +++     NG  + ++ +F  M +     PD+     ++ A   L+    G 
Sbjct: 530 KKDIVSWTSMINCCTNNGRLNGAVFLFTEMQK-ANIQPDSVALVSILVAIAGLSSLTKGK 588

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +HG ++   F ++  V + L+ MY   G +  A +VF+      VV W  +I+    + 
Sbjct: 589 QVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHG 648

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR-MIHELVAGGRLGKNIAAW 250
           + K+A+ +F  ML++G+ PD  S +++L AC + K +E G+  +  +V+  RL      +
Sbjct: 649 HGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHY 708

Query: 251 NALVDMYVKCGSVNEA 266
             +VD+  + G   EA
Sbjct: 709 ACVVDILGRSGQTEEA 724


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/619 (36%), Positives = 360/619 (58%), Gaps = 8/619 (1%)

Query: 48  HLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL 104
           ++ ++L+  Y     + N R +F+EMS R S  +N+++  Y  NG   D+L M+    R+
Sbjct: 157 YIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMY-HKFRM 215

Query: 105 GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA 164
               PD +T   V+ AC  L   K G+A+HG +   G   D  +GN L++MY  F  ++ 
Sbjct: 216 TGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLRE 275

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
           AR+VF  M     V+WNT+I GY +    + ++ +F  M+  G  PD  S+ S + ACG 
Sbjct: 276 ARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACGQ 334

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
             ++++G+ +H+ + G     +  A N L+DMY KCG +  A+ VFD    +D VTW S+
Sbjct: 335 SGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSL 394

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           INGY  +G  +  L  F++M+ E  +P+S+T   LLS  S L  + +GR +H   IK   
Sbjct: 395 INGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGF 453

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
           E E+I+  +L+D+YAKC  +    +VF+  S    + WN ++A  VH        ++  +
Sbjct: 454 EAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINE 513

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           M  E + P++AT+  +LP  ++LA  +Q   IH Y+ + GF S V +   LI++YSKCGS
Sbjct: 514 MRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGS 573

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           LE+  K+F  +  K+KD+V W+ +I+ +GM+G G+ A+  F++M  SGV P+ V F + +
Sbjct: 574 LENCIKVFKYM--KEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFI 631

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            ACSH G++ EGL  F+ M  ++    R +HY C+VDLL R+G L +A + I +MP+KP 
Sbjct: 632 FACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPD 691

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
            ++WGALL AC   GN  + +  +K + EL  ++ G YVL+S +Y+ + +W   + VR+ 
Sbjct: 692 ASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNS 751

Query: 645 MDEKGLRKAPAHSLIEVRN 663
           M  KGL+K P  S IE++ 
Sbjct: 752 MKTKGLKKEPGSSWIEIQK 770



 Score =  298 bits (762), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 183/611 (29%), Positives = 312/611 (51%), Gaps = 15/611 (2%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHV----SNVR 64
           P    L   L++  ++ K+    + +H+ IITSG  L       L+  Y  V    S+V 
Sbjct: 16  PSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVS 75

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           +        + +L+N++++    NG    +L  +  M R  +  PD +T+P VI +C  +
Sbjct: 76  VFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEM-REKKLQPDAFTFPSVINSCARI 134

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
              +LG  +H   +  GF+ D ++GN LI MY  F ++  AR VF+ M     VSWN+LI
Sbjct: 135 LDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLI 194

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           SGY  N + ++AL ++     +G+ PDC ++ SVL ACG L  ++ G  +H ++    + 
Sbjct: 195 SGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIA 254

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            ++   N L+ MY K   + EAR VF +M+ +D VTW +MI GYA  G    ++ LF  M
Sbjct: 255 GDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM 314

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
             +G  P+ L+I S + AC     L+ G+ +H + I    EC+ +    LIDMYAKC  +
Sbjct: 315 -IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDL 373

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
             + +VF  T  K +V WN+++ G   +G  ++ +E F+ M +E  +P+  T   LL  +
Sbjct: 374 LAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKME-RKPDSVTFVLLLSIF 432

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           + LAD+ Q   IHC +I++GF + + +   L+D+Y+KCG ++   K+FS +     DI+ 
Sbjct: 433 SQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSA--HDIIS 490

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+ +IA             +  EM   G+ P+E T    L  CS   +  +G ++  ++ 
Sbjct: 491 WNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIF 550

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
           ++    S       ++++  + G L+    + + M  K     W AL+ A  ++G    G
Sbjct: 551 KSGFE-SNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDV-VTWTALISAFGMYGE---G 605

Query: 605 EVAAKWLFELE 615
           + A K   ++E
Sbjct: 606 KKALKAFQDME 616


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/616 (36%), Positives = 371/616 (60%), Gaps = 6/616 (0%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           SSL++ Y   G + + R  FD+M ++   L+N ++  Y Q G S  ++K+F  M+   E 
Sbjct: 49  SSLIKLYADNGCIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMS-SEA 107

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PD+ T+  V+      A  + G  LHG V+ +G D    VGN L+ +Y    ++  ARK
Sbjct: 108 KPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARK 167

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +FD M +  +V WN +I GY +N +  +A ++F+ M+ +G++PD  +  S LP+      
Sbjct: 168 LFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSS 227

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           ++  + IH  +    +  ++   +AL+D+Y KC     A  +F+  ++ D+V +T+MI+G
Sbjct: 228 LKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISG 287

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y LNG  ++AL +F+ +  + + PN+LT  S+L AC+ L  +K GR LH + IK  LE +
Sbjct: 288 YVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEK 347

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
             V +A+++MYAKC  + L+  +F R S K  + WN+I+     +G   +A+ LFRQM +
Sbjct: 348 CPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGM 407

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           E V+ +  T+++ L A A +  L     IH ++I+  F S +   + LI++Y+KCG L  
Sbjct: 408 EGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNI 467

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A  +F+ +  ++K+ V W+ IIA YG HG+   +++LF  M++ G+QP+ +TF + L +C
Sbjct: 468 ARLVFNLM--QEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSC 525

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
            H G +++G+  F  M E +   ++ +HY C+ DL GRAG LDEA+++I +MP  P  +V
Sbjct: 526 GHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASV 585

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           WG LLGAC +HGNVEL EVA+++L +LEP+N G Y+LL+ + +   +W+    ++ +M E
Sbjct: 586 WGTLLGACRVHGNVELAEVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQHLMKE 645

Query: 648 KGLRKAPAHSLIEVRN 663
           +G++K P  S IEV N
Sbjct: 646 RGVQKVPGCSWIEVNN 661



 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 164/499 (32%), Positives = 272/499 (54%), Gaps = 5/499 (1%)

Query: 101 MLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG 160
           ML  G + PD YT+P VIK CT L   +LG  +   +L  GFD+D FV + LI +Y + G
Sbjct: 1   MLGCGVF-PDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNG 59

Query: 161 EVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLP 220
            ++ AR+ FD M +   V WN +I+GY +   +  A+ +F  M+ S  +PD  +   VL 
Sbjct: 60  CIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLS 119

Query: 221 ACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT 280
                  +E GR +H LV    L       N LV +Y K   + +AR +FD M + D+V 
Sbjct: 120 ISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVV 179

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           W  MI GY  NG + +A  LF  M   G++P+S+T  S L + +    LK+ + +H + +
Sbjct: 180 WNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIV 239

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
           +  +  +V + +ALID+Y KC    ++ ++F  ++K   V + A+++G V NG+ + A+E
Sbjct: 240 RHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALE 299

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
           +FR +L + + PN  T +S+LPA A LA ++    +H Y+I+        V + ++++Y+
Sbjct: 300 IFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYA 359

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           KCG L+ AH IF  I IKD   + W+ II  +   G  E A+ LF++M   GV+ + VT 
Sbjct: 360 KCGRLDLAHLIFGRISIKDA--ICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTV 417

Query: 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
           ++AL AC++   L  G ++  FM++        D  + ++++  + G+L+ A  +   M 
Sbjct: 418 SAALSACANIPALHYGKEIHGFMIKGAFESDLFD-MSALINMYAKCGKLNIARLVFNLMQ 476

Query: 581 LKPTHAVWGALLGACVIHG 599
            K     W +++ A   HG
Sbjct: 477 EK-NEVAWNSIIAAYGYHG 494



 Score =  235 bits (600), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 136/474 (28%), Positives = 250/474 (52%), Gaps = 7/474 (1%)

Query: 33  KQLHAFIITSGPLFTHL-RSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +QLH  ++ SG  F  L  ++LV  Y     + + R LFD M +    ++N ++  Y QN
Sbjct: 131 RQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQN 190

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   D+  +F  M+  G   PD+ T+   + +  + +  K    +HG ++  G  +D ++
Sbjct: 191 GFMDDASMLFNEMISAG-IKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYL 249

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            + LI +Y    +   A K+F+   +  +V +  +ISGY  N   K+AL +F W+L+  +
Sbjct: 250 NSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKM 309

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P+  +  S+LPAC  L  I++GR +H  +    L +     +A+++MY KCG ++ A L
Sbjct: 310 IPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHL 369

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +F R+S +D + W S+I  ++ +G    A+ LF+ M  EGV+ + +T+ + LSAC+++  
Sbjct: 370 IFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPA 429

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L  G+ +H + IK   E ++   +ALI+MYAKC  + ++  VF    +K  V WN+I+A 
Sbjct: 430 LHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAA 489

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN-IHCYLIRYGFLS 447
             ++G    ++ LF  ML E ++P+  T  ++L +      ++  +    C    YG  +
Sbjct: 490 YGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPA 549

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
            +E    + D++ + G L+ A ++ + +P       VW  ++    +HG+ E A
Sbjct: 550 QMEHYACMADLFGRAGHLDEAFEVITSMPFPPA-ASVWGTLLGACRVHGNVELA 602


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/665 (35%), Positives = 373/665 (56%), Gaps = 7/665 (1%)

Query: 5   SHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAY---GHV 60
             H L      ++  +    +  ++   +++H   + +G LF   + + ++  Y   G +
Sbjct: 118 QQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSI 177

Query: 61  SNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKA 120
              R +FD+M ++S   +   +  YA  G S  + ++F  M + G   P+  TY  V+ A
Sbjct: 178 EEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVV-PNRITYISVLNA 236

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
            +  A  K G A+H R+L  G + DT VG  L+ MY   G  K  R+VF+ +    +++W
Sbjct: 237 FSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAW 296

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
           NT+I G  +  Y +EA  V++ M + GV P+  + V +L AC     +  G+ IH  VA 
Sbjct: 297 NTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAK 356

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
                +I   NAL+ MY +CGS+ +ARLVFD+M  +DV++WT+MI G A +G    AL +
Sbjct: 357 AGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTV 416

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
           +Q MQ  GV PN +T  S+L+ACSS   L+ GR +H   ++  L  +  V   L++MY+ 
Sbjct: 417 YQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSM 476

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           C  VK + QVF R  ++  V +NA++ G   + L ++A++LF ++  E ++P+  T  ++
Sbjct: 477 CGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINM 536

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L A A    L+ A  IH  + + GF S   V   L+  Y+KCGS   A  +F ++    +
Sbjct: 537 LNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMT--KR 594

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
           +++ W+ II G   HG G+ A+ LF+ M   GV+P+ VTF S L ACSH GLL+EG   F
Sbjct: 595 NVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYF 654

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             M ++       +HY C+VDLLGRAG+LDEA  LI+TMP +    +WGALLGAC IHGN
Sbjct: 655 CSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGN 714

Query: 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           V + E AA+   +L+ +N   YV LS +Y+A   W  A  +R +M+++G+ K P  S I+
Sbjct: 715 VPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQ 774

Query: 661 VRNIL 665
           V + L
Sbjct: 775 VGDKL 779



 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 168/506 (33%), Positives = 266/506 (52%), Gaps = 9/506 (1%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM- 172
           Y  ++K C ++     G  +H  ++      D +  N LI MY+  G ++ AR+V+  + 
Sbjct: 26  YMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLS 85

Query: 173 -WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
             E +V SWN ++ GY +  Y ++AL +   M + G+ PD  +++S L +C     +E G
Sbjct: 86  YMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWG 145

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           R IH       L  ++   N +++MY KCGS+ EAR VFD+M ++ VV+WT  I GYA  
Sbjct: 146 REIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADC 205

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G    A  +FQ M+ EGV PN +T  S+L+A SS   LK G+++H+  +    E +  V 
Sbjct: 206 GRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVG 265

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
           TAL+ MYAKC   K   QVF +   +  + WN ++ G    G   +A E++ QM  E V 
Sbjct: 266 TALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVM 325

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           PN  T   LL A    A L     IH  + + GF S + V   LI +YS+CGS++ A  +
Sbjct: 326 PNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLV 385

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F ++    KD++ W+ +I G    G G  A+++++EM Q+GV+PN VT+TS L+ACS   
Sbjct: 386 FDKMV--RKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPA 443

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
            L+ G  +   ++E     + A     +V++    G + +A  +   M  +   A + A+
Sbjct: 444 ALEWGRRIHQQVVEA-GLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVA-YNAM 501

Query: 592 LGACVIHGNVELGEVAAKWLFELEPE 617
           +G    H    LG+ A K    L+ E
Sbjct: 502 IGGYAAH---NLGKEALKLFDRLQEE 524



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 137/493 (27%), Positives = 243/493 (49%), Gaps = 42/493 (8%)

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           A+ V  ++ + G + + +  + +L  C  +K++  GR +H+ +   R   +    NAL++
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 256 MYVKCGSVNEARLVFDRMS--ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           MY++CGS+ EAR V+ ++S  ER V +W +M+ GY   G +  AL L + MQ  G+ P+ 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            TI S LS+C S   L+ GR +H   ++  L  +V V   +++MYAKC  ++ + +VF +
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
             KK  V W   + G    G +  A E+F++M  E V PN  T  S+L A++  A L+  
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG 246

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             +H  ++  G  S   V T L+ +Y+KCGS +   ++F ++   ++D++ W+ +I G  
Sbjct: 247 KAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLV--NRDLIAWNTMIGGLA 304

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF------------- 540
             G+ E A  ++ +M + GV PN++T+   L+AC +   L  G ++              
Sbjct: 305 EGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIG 364

Query: 541 --NFMLENHQTCS-------------RAD--HYTCIVDLLGRAGRLDEA---YDLIRTMP 580
             N ++  +  C              R D   +T ++  L ++G   EA   Y  ++   
Sbjct: 365 VQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAG 424

Query: 581 LKPTHAVWGALLGACVIHGNVELGEVAAKWLFE---LEPENPGNYVLLSKLYSAVRRWKD 637
           ++P    + ++L AC     +E G    + + E       + GN   L  +YS     KD
Sbjct: 425 VEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGN--TLVNMYSMCGSVKD 482

Query: 638 AENVRDVMDEKGL 650
           A  V D M ++ +
Sbjct: 483 ARQVFDRMIQRDI 495


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/649 (36%), Positives = 364/649 (56%), Gaps = 7/649 (1%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSE 72
           +KL+Q     K +A  KQ+H  I+  G     ++ ++L++ Y   G V+  R LFD+ S 
Sbjct: 48  VKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSN 107

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           +S   +N ++  YA  G   ++  +F  M + G   PD +T+  ++ AC+  A    G  
Sbjct: 108 KSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEG-LEPDKFTFVSILSACSSPAALNWGRE 166

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H RV+  G   +  VGN LI+MY   G V+ AR+VFDAM     VSW TL   Y ++ Y
Sbjct: 167 VHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGY 226

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
           A+E+L  +  ML+ GV P   + ++VL ACG L  +E G+ IH  +       ++    A
Sbjct: 227 AQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTA 286

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L  MY+KCG+V +AR VF+ +  RDV+ W +MI G   +G +  A G+F  M  E V P+
Sbjct: 287 LTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPD 346

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            +T  ++LSAC+    L  G+ +HA  +K  L  +V    ALI+MY+K   +K + QVF 
Sbjct: 347 RVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFD 406

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           R  K+  V W A++ G    G   ++   F++ML + VE N  T   +L A +    L+ 
Sbjct: 407 RMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKW 466

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              IH  +++ G  + + V+  L+ +Y KCGS+E A ++ SE  +  +D+V W+ +I G 
Sbjct: 467 GKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRV-SE-GMSTRDVVTWNTLIGGL 524

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
             +G G  A+  F+ M    ++PN  TF + + AC    L++EG   F  M +++     
Sbjct: 525 AQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPT 584

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
             HY C+VD+L RAG L EA D+I TMP KP+ A+WGALL AC  HGNVE+GE AA+   
Sbjct: 585 EKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCL 644

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +LEP+N G YV LS +Y+A   W+D   +R +M E+G++K P  S IEV
Sbjct: 645 KLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEV 693



 Score =  292 bits (747), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 168/528 (31%), Positives = 273/528 (51%), Gaps = 35/528 (6%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           D+Y Y  ++++C       +G  +H  +L  G   + ++ N L+ +Y++ G V  AR++F
Sbjct: 43  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLF 102

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           D     SVVSWN +ISGY      +EA  +F  M + G+EPD  + VS+L AC     + 
Sbjct: 103 DKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALN 162

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
            GR +H  V    L  N    NAL+ MY KCGSV +AR VFD M+ RD V+WT++   YA
Sbjct: 163 WGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYA 222

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            +G  + +L  +  M  EGVRP+ +T  ++LSAC SL  L++G+ +HA  ++     +V 
Sbjct: 223 ESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVR 282

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           V TAL  MY KC  VK + +VF     +  + WN ++ G V +G   +A  +F +ML E 
Sbjct: 283 VSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKEC 342

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           V P+  T  ++L A A    L     IH   ++ G +S V     LI++YSK GS++ A 
Sbjct: 343 VAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDAR 402

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS- 528
           ++F  +P   +D+V W+ ++ GY   G    + S FK+M+Q GV+ N++T+   L ACS 
Sbjct: 403 QVFDRMP--KRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSN 460

Query: 529 ----------HGGLLDEG----LDLFNFMLENHQTCSRADH---------------YTCI 559
                     H  ++  G    L + N ++  +  C   +                +  +
Sbjct: 461 PVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTL 520

Query: 560 VDLLGRAGRLDEA---YDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
           +  L + GR  EA   ++++++  ++P    +  ++ AC +   VE G
Sbjct: 521 IGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEG 568



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/403 (32%), Positives = 213/403 (52%), Gaps = 4/403 (0%)

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           V  ++ + G + D    V +L +C   K++ +G+ +HE +    +  N+   N L+ +YV
Sbjct: 31  VLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYV 90

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
            CGSVNEAR +FD+ S + VV+W  MI+GYA  G  + A  LF LMQ EG+ P+  T  S
Sbjct: 91  HCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVS 150

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           +LSACSS   L  GR +H   ++  L     V  ALI MYAKC  V+ + +VF   + + 
Sbjct: 151 ILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRD 210

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
            V W  +      +G A+++++ +  ML E V P+  T  ++L A   LA L++   IH 
Sbjct: 211 EVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHA 270

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
            ++     S V VST L  +Y KCG+++ A ++F  +P  ++D++ W+ +I G    G  
Sbjct: 271 QIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLP--NRDVIAWNTMIGGLVDSGQL 328

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
           E A  +F  M++  V P+ VT+ + L AC+  G L  G ++    +++    S       
Sbjct: 329 EEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKD-GLVSDVRFGNA 387

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
           ++++  +AG + +A  +   MP +     W AL+G     G V
Sbjct: 388 LINMYSKAGSMKDARQVFDRMPKRDV-VSWTALVGGYADCGQV 429


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/604 (36%), Positives = 353/604 (58%), Gaps = 5/604 (0%)

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           + N R +F+EMS R S  +N+++  Y  NG   D+L M+    R+    PD +T   V+ 
Sbjct: 172 LDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMY-HKFRMTGMVPDCFTMSSVLL 230

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           AC  L   K G+A+HG +   G   D  +GN L++MY  F  ++ AR+VF  M     V+
Sbjct: 231 ACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVT 290

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WNT+I GY +    + ++ +F  M+  G  PD  S+ S + ACG   ++++G+ +H+ + 
Sbjct: 291 WNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLI 349

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
           G     +  A N L+DMY KCG +  A+ VFD    +D VTW S+INGY  +G  +  L 
Sbjct: 350 GSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLE 409

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
            F++M+ E  +P+S+T   LLS  S L  + +GR +H   IK   E E+I+  +L+D+YA
Sbjct: 410 SFKMMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYA 468

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           KC  +    +VF+  S    + WN ++A  VH        ++  +M  E + P++AT+  
Sbjct: 469 KCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLG 528

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           +LP  ++LA  +Q   IH Y+ + GF S V +   LI++YSKCGSLE+  K+F  +  K+
Sbjct: 529 ILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYM--KE 586

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
           KD+V W+ +I+ +GM+G G+ A+  F++M  SGV P+ V F + + ACSH G++ EGL  
Sbjct: 587 KDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRF 646

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           F+ M  ++    R +HY C+VDLL R+G L +A + I +MP+KP  ++WGALL AC   G
Sbjct: 647 FDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARG 706

Query: 600 NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           N  + +  +K + EL  ++ G YVL+S +Y+ + +W   + VR+ M  KGL+K P  S I
Sbjct: 707 NTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWI 766

Query: 660 EVRN 663
           E++ 
Sbjct: 767 EIQK 770



 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 183/611 (29%), Positives = 312/611 (51%), Gaps = 15/611 (2%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHV----SNVR 64
           P    L   L++  ++ K+    + +H+ IITSG  L       L+  Y  V    S+V 
Sbjct: 16  PSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVS 75

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           +        + +L+N++++    NG    +L  +  M R  +  PD +T+P VI +C  +
Sbjct: 76  VFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEM-REKKLQPDAFTFPSVINSCARI 134

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
              +LG  +H   +  GF+ D ++GN LI MY  F ++  AR VF+ M     VSWN+LI
Sbjct: 135 LDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLI 194

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           SGY  N + ++AL ++     +G+ PDC ++ SVL ACG L  ++ G  +H ++    + 
Sbjct: 195 SGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIA 254

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            ++   N L+ MY K   + EAR VF +M+ +D VTW +MI GYA  G    ++ LF  M
Sbjct: 255 GDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM 314

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
             +G  P+ L+I S + AC     L+ G+ +H + I    EC+ +    LIDMYAKC  +
Sbjct: 315 -IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDL 373

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
             + +VF  T  K +V WN+++ G   +G  ++ +E F+ M +E  +P+  T   LL  +
Sbjct: 374 LAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKME-RKPDSVTFVLLLSIF 432

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           + LAD+ Q   IHC +I++GF + + +   L+D+Y+KCG ++   K+FS +     DI+ 
Sbjct: 433 SQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSA--HDIIS 490

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+ +IA             +  EM   G+ P+E T    L  CS   +  +G ++  ++ 
Sbjct: 491 WNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIF 550

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
           ++    S       ++++  + G L+    + + M  K     W AL+ A  ++G    G
Sbjct: 551 KSGFE-SNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDV-VTWTALISAFGMYGE---G 605

Query: 605 EVAAKWLFELE 615
           + A K   ++E
Sbjct: 606 KKALKAFQDME 616


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/659 (35%), Positives = 371/659 (56%), Gaps = 9/659 (1%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---R 64
           LP   H  + L+++  ++K++   K  HA IIT+       + + LV+AY  + ++   R
Sbjct: 27  LPTIIHNFLSLLRE--SSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAAR 84

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
            +FD+  +    L N ++  Y Q+G   ++L++F G++R      D+ +    +KAC   
Sbjct: 85  YVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELF-GLMRSRNLEVDSCSCTFALKACASS 143

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
              ++G+ +    +  G + + FVG+ +I+  + FG++  A++VFD M    VV WN++I
Sbjct: 144 LDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSII 203

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
            GY +      A  +F  M  SG++P   ++ S++ ACG +  +++G+ +H  V G  LG
Sbjct: 204 GGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLG 263

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            +I    + VDMY K G +  AR VF +M  R++V+W +MI+G   NG V  +  LF  +
Sbjct: 264 NDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRL 323

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
                  +  TI SLL  CS    L  G+ LH   I+ + E  +I+ TA++D+Y+KC  +
Sbjct: 324 VRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIR-SFESNLILSTAIVDLYSKCGSL 382

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
           K +  VF R   +  + W A+L G   NG A  A+ LF QM  E +  N  T  SL+ + 
Sbjct: 383 KQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSC 442

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           A L  L++  +IH +L R GF   +   T L+D+Y+KCG +  A +IFS   I  KD+V+
Sbjct: 443 AHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSI-SKDVVL 501

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+ +I GYGMHGHG  AV ++ +M++ G++PN+ TF S L ACSH  L+++G+ LFN M 
Sbjct: 502 WNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSME 561

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
            +H       HY C+VDLL RAGR +EA  LI  MP +P  AV  ALL  C  H N+ LG
Sbjct: 562 RDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLG 621

Query: 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
              +  L  L+  NPG Y++LS +Y+  RRW   + +R +M  +GL+K P +SL+E  N
Sbjct: 622 IQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGN 680


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/634 (36%), Positives = 366/634 (57%), Gaps = 8/634 (1%)

Query: 34  QLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           QLH F++ SG     ++ +SL+  Y   G +   R++FD++ E+++  + T++  Y + G
Sbjct: 58  QLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCG 117

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
            S  SL++F  M R     PD Y    V+ AC+ L + + G  +H  VL  G +MD  V 
Sbjct: 118 RSXVSLELFAQM-RETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVV 176

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N LI  Y     VKA RK+FD M   +++SW T+ISGY +N++  EA+ +F  M + G +
Sbjct: 177 NVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWK 236

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PD  +  SVL +CG L+ +E GR +H       L  N    N L+DMY K   + +A+ V
Sbjct: 237 PDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKV 296

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           FD M+E++V+++ +MI GY+    +  AL LF  M+     P+ LT  SLL   +SL+ L
Sbjct: 297 FDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFAL 356

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           +  + +H   IK  +  ++   +ALID+Y+KC+ VK +  VF   ++K  V WNA+  G 
Sbjct: 357 ELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGY 416

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
             +    +A++L+  +     +PN+ T  +L+ A + LA L+     H  L++ G     
Sbjct: 417 TQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCP 476

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            V+  L+D+Y+KCGS+E A K+F+    +D  +V W+ +I+ +  HG  E A+ +F+EM+
Sbjct: 477 FVTNALVDMYAKCGSIEEARKMFNSSIWRD--VVCWNSMISTHAQHGEAEEALGMFREMM 534

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           + G+QPN VTF + L ACSH G +++GL+ FN M          +HY C+V LLGR+G+L
Sbjct: 535 KEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRSGKL 593

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629
            EA + I  MP++P   VW +LL AC I GNVELG+ AA+     +P++ G+Y+LLS ++
Sbjct: 594 FEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIF 653

Query: 630 SAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           ++   W D + VRD MD   + K P  S IEV N
Sbjct: 654 ASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNN 687



 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 182/549 (33%), Positives = 287/549 (52%), Gaps = 35/549 (6%)

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G S ++L +F+ + R    +P+ +    VI+ACT L   + G  LHG V+ +GFD D +V
Sbjct: 15  GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 74

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           G  LI  Y   G+++ AR VFD + E + V+W T+I+GY K   +  +L +F  M ++ V
Sbjct: 75  GTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNV 134

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            PD   V SVL AC  L+ +E G+ IH  V       +++  N L+D Y KC  V   R 
Sbjct: 135 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 194

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +FD+M  +++++WT+MI+GY  N     A+ LF  M   G +P+     S+L++C SL  
Sbjct: 195 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEA 254

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L++GR +HA+TIK NLE    V+  LIDMYAK NL+  + +VF   +++  + +NA++ G
Sbjct: 255 LEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEG 314

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
                   +A+ELF +M V +  P+  T  SLL   A L  L+ +  IH  +I+ G    
Sbjct: 315 YSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLD 374

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           +   + LID+YSKC  ++ A  +F E  + +KDIVVW+ +  GY  H   E A+ L+  +
Sbjct: 375 LFAGSALIDVYSKCSYVKDARHVFEE--MNEKDIVVWNAMFFGYTQHLENEEALKLYSTL 432

Query: 509 VQSGVQPNEVTFTSALHACS-----------HGGLLDEGLDLFNF----MLENHQTCSRA 553
             S  +PNE TF + + A S           H  L+  GLD   F    +++ +  C   
Sbjct: 433 QFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSI 492

Query: 554 DH---------------YTCIVDLLGRAGRLDEAYDLIRTM---PLKPTHAVWGALLGAC 595
           +                +  ++    + G  +EA  + R M    ++P +  + A+L AC
Sbjct: 493 EEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSAC 552

Query: 596 VIHGNVELG 604
              G VE G
Sbjct: 553 SHAGXVEDG 561



 Score =  232 bits (592), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 140/475 (29%), Positives = 248/475 (52%), Gaps = 6/475 (1%)

Query: 29  IAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKM 84
           + G KQ+HA+++  G  +   + + L+  Y   + V   R LFD+M  ++   + T++  
Sbjct: 154 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISG 213

Query: 85  YAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDM 144
           Y QN    +++K+F  M RLG + PD +    V+ +C  L   + G  +H   +    + 
Sbjct: 214 YMQNSFDWEAMKLFGEMNRLG-WKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLES 272

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           + FV N LI MY     +  A+KVFD M E +V+S+N +I GY       EAL +F  M 
Sbjct: 273 NEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMR 332

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
                P   + VS+L     L  +E+ + IH L+    +  ++ A +AL+D+Y KC  V 
Sbjct: 333 VRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVK 392

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
           +AR VF+ M+E+D+V W +M  GY  + +   AL L+  +QF   +PN  T  +L++A S
Sbjct: 393 DARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAAS 452

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
           +L  L+ G+  H   +K  L+    V  AL+DMYAKC  ++ + ++F  +  +  V WN+
Sbjct: 453 NLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNS 512

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           +++    +G A +A+ +FR+M+ E ++PN  T  ++L A +    ++  +N    +  +G
Sbjct: 513 MISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMPGFG 572

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
                E    ++ +  + G L  A +   ++PI+   I VW  +++   + G+ E
Sbjct: 573 IKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAI-VWRSLLSACRIAGNVE 626


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/619 (38%), Positives = 356/619 (57%), Gaps = 6/619 (0%)

Query: 49  LRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN 108
           L S  VR +G++ +   +F  M +R+ F +N ++  YA+ G   ++L ++  ML +G   
Sbjct: 147 LLSMFVR-FGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVG-VK 204

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           PD YT+P V++ C  +     G  +H  V+  GF+ D  V N LI MY+  G+V  AR V
Sbjct: 205 PDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLV 264

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           FD M     +SWN +ISGYF+N    E L +F  M+K  V+PD  ++ SV+ AC  L + 
Sbjct: 265 FDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDD 324

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
            +GR IH  V     G++ +  N+L+ MY   G + EA  VF R   RD+V+WT+MI+GY
Sbjct: 325 RLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGY 384

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
                 + AL  +++M+ EG+ P+ +TI  +LSACS L  L  G +LH    ++ L    
Sbjct: 385 ENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYS 444

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
           IV  +LIDMYAKC  +  + ++F  T +K  V W +I+ G   N    +A+  FR+M + 
Sbjct: 445 IVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREM-IR 503

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            ++PN  TL  +L A A +  L     IH + +R G      +   ++D+Y +CG +E A
Sbjct: 504 RLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYA 563

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            K F  +   D ++  W++++ GY   G G  A  LF+ MV+S V PNEVTF S L ACS
Sbjct: 564 WKQFFSV---DHEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACS 620

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
             G++ EGL+ FN M   +       HY C+VDLLGR+G+L+EAY+ I+ MP+KP  AVW
Sbjct: 621 RSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVW 680

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
           GALL +C IH +VELGE+AA+ +F+ +  + G Y+LLS LY+   +W     VR +M + 
Sbjct: 681 GALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQN 740

Query: 649 GLRKAPAHSLIEVRNILTA 667
           GL   P  S +EV+  + A
Sbjct: 741 GLIVDPGCSWVEVKGTVHA 759



 Score =  248 bits (633), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 171/538 (31%), Positives = 279/538 (51%), Gaps = 19/538 (3%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           ++  Y  +I+ C     RK G  ++  V I+   +   +GN L++M++ FG +  A  VF
Sbjct: 105 EDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDAWYVF 164

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
             M + ++ SWN L+ GY K     EAL ++  ML  GV+PD  +   VL  CG +  + 
Sbjct: 165 GRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLV 224

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
            GR IH  V       ++   NAL+ MYVKCG VN ARLVFD+M  RD ++W +MI+GY 
Sbjct: 225 RGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYF 284

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            NG     L LF +M    V P+ +T+ S+++AC  L   + GR +H + ++     +  
Sbjct: 285 ENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPS 344

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           +  +LI MY+   L++ +  VF+RT  +  V W A+++G  +  + +KA+E ++ M  E 
Sbjct: 345 IHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEG 404

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           + P++ T+  +L A + L +L   MN+H    + G +S   V+  LID+Y+KC  ++ A 
Sbjct: 405 IMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKAL 464

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
           +IF      +K+IV W+ II G  ++     A+  F+EM++  ++PN VT    L AC+ 
Sbjct: 465 EIFHS--TLEKNIVSWTSIILGLRINNRCFEALFFFREMIRR-LKPNSVTLVCVLSACAR 521

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
            G L  G ++    L   +T    D +    I+D+  R GR++ A+    ++  + T   
Sbjct: 522 IGALTCGKEIHAHAL---RTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVDHEVTS-- 576

Query: 588 WGALLGACVIHGNVELGEVA-AKWLFELEPE---NPGNYVLLSKLYSAVRRWKDAENV 641
           W  LL      G  E G+ A A  LF+   E   +P     +S L +  R    AE +
Sbjct: 577 WNILLT-----GYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGL 629



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 176/336 (52%), Gaps = 4/336 (1%)

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
           L+  VE D  + V+++  C + +  + G  ++  V+      ++   NAL+ M+V+ G++
Sbjct: 100 LRIPVEDD--AYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNL 157

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
            +A  VF RM +R++ +W  ++ GYA  G    AL L+  M + GV+P+  T   +L  C
Sbjct: 158 VDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTC 217

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
             +  L RGR +H   I+   E +V V  ALI MY KC  V  +  VF +   +  + WN
Sbjct: 218 GGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWN 277

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           A+++G   NG+  + + LF  M+   V+P+  T+ S++ A  +L D +    IH Y++R 
Sbjct: 278 AMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRT 337

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
            F     +   LI +YS  G +E A  +FS      +D+V W+ +I+GY      + A+ 
Sbjct: 338 EFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTEC--RDLVSWTAMISGYENCLMPQKALE 395

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
            +K M   G+ P+E+T    L ACS    LD G++L
Sbjct: 396 TYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNL 431


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/634 (35%), Positives = 369/634 (58%), Gaps = 6/634 (0%)

Query: 30  AGTKQLHAFIITSGPL-FTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           A +K+  +F++    +  T   SS V   G++ N   LF+ M +  +F++N +++ +  N
Sbjct: 46  ARSKRNQSFLVERNSVSLTRALSSYVER-GYMKNALDLFENMRQCDTFIWNVMIRGFVDN 104

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   D++  F   +  G    DN+TYP VIKAC  L     G  +HG+V+ +G D+D ++
Sbjct: 105 GLFWDAVD-FYHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYI 163

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           GN LI MY   G +++A  VF  M    +VSWN++ISGY        +L  F  M  SG+
Sbjct: 164 GNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGI 223

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           + D  SV+ +L AC     +  G+ IH  +   RL  ++    +LVDMY KCG ++ A  
Sbjct: 224 KLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAER 283

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLY 327
           +FD+++++ +V W +MI GY+LN     +    + MQ  G + P+ +T+ +LL  C+ L 
Sbjct: 284 LFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLE 343

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            +  G+S+H + I+      +++ETAL+DMY +C  +K +  +F + +++  + WNA++A
Sbjct: 344 AILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIA 403

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
               NG  RKA+ LF+ +  + ++P+  T+ S+LPAYA LA L++A  IH Y+ +    S
Sbjct: 404 SYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDS 463

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
              VS  ++ +Y KCG+L  A +IF  +  KD  ++ W+ +I  Y +HG G  ++ LF E
Sbjct: 464 NTFVSNSIVFMYGKCGNLLRAREIFDRMTFKD--VISWNTVIMAYAIHGFGRISIELFSE 521

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M + G +PN  TF S L +CS  GL++EG + FN M  ++      +HY CI+DL+GR G
Sbjct: 522 MREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTG 581

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
            LD A + I  MPL PT  +WG+LL A    G+VEL E+AA+ +  LE +N G YVLLS 
Sbjct: 582 NLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLSN 641

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +Y+   RW+D E ++  M ++GL K+   S++++
Sbjct: 642 MYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDL 675


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/666 (35%), Positives = 384/666 (57%), Gaps = 18/666 (2%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIIT---SGPLFTHLRSSLVRAY--- 57
           P  HT P        +V+  AA  +IA  + +H    T    G +F  + S+L++ Y   
Sbjct: 144 PDSHTFPY-------VVKSCAALGAIALGRLVHRTARTLGLDGDMF--VGSALIKMYANG 194

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G + + R +FD M+ER   L+N +M  Y + G+   ++++F G +R     P+  T    
Sbjct: 195 GLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELF-GDMRASGCEPNFATLACF 253

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +      +    G+ LH   +  G + +  V N L++MY     +    K+F  M    +
Sbjct: 254 LSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDL 313

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V+WN +ISG  +N +  +AL++F  M KSG+ PD  ++VS+LPA   L     G+ +H  
Sbjct: 314 VTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGY 373

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +    +  ++   +ALVD+Y KC +V  A+ V+D     DVV  ++MI+GY LNG  + A
Sbjct: 374 IVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEA 433

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + +F+ +  +G+RPN++ I S+L AC+S+  +K G+ LH++ +K   E    VE+AL+DM
Sbjct: 434 VKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDM 493

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAKC  + LS  +F++ S K  V WN++++    NG   +A+ LFR+M +E V+ ++ T+
Sbjct: 494 YAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTI 553

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +S+L A A L  +     IH  +I+    + +   + LID+Y KCG+LE AH++F  +P 
Sbjct: 554 SSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMP- 612

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            +K+ V W+ IIA YG +G  + +VSL + M + G + + VTF + + AC+H G + EGL
Sbjct: 613 -EKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGL 671

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
            LF  M E +Q   R +H+ C+VDL  RAG+LD+A +LI  MP KP   +WGALL AC +
Sbjct: 672 RLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRV 731

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           H NVEL E+A++ LF+L+P N G YVL+S + +   RW     VR +M +  ++K P +S
Sbjct: 732 HRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYS 791

Query: 658 LIEVRN 663
            ++V N
Sbjct: 792 WVDVNN 797



 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 149/492 (30%), Positives = 245/492 (49%), Gaps = 10/492 (2%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFD-MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           V++ C   +   LG+ +HGR +  G    DT +   L+ MY+     + A  VF ++   
Sbjct: 45  VLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRG 104

Query: 176 SV---VSWNTLISGYFKNAYAKEALVVF--DWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
           +    + WN LI G       + AL+ +   W   S   PD  +   V+ +C  L  I +
Sbjct: 105 AAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIAL 164

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
           GR++H       L  ++   +AL+ MY   G + +AR VFD M+ERD V W  M++GY  
Sbjct: 165 GRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVK 224

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
            G V +A+ LF  M+  G  PN  T+   LS  ++   L  G  LH   +K  LE EV V
Sbjct: 225 AGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAV 284

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
              L+ MYAKC  +   +++F    +   V WN +++GCV NG   +A+ LF  M    +
Sbjct: 285 ANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGI 344

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
            P+  TL SLLPA   L    Q   +H Y++R      V + + L+DIY KC ++  A  
Sbjct: 345 RPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQS 404

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           ++     K  D+V+ S +I+GY ++G  + AV +F+ +++ G++PN V   S L AC+  
Sbjct: 405 VYDS--SKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASM 462

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
             +  G +L ++ L+N     R    + ++D+  + GRLD ++ +   +  K     W +
Sbjct: 463 AAMKLGQELHSYALKNAYE-GRCYVESALMDMYAKCGRLDLSHYIFSKISAK-DEVTWNS 520

Query: 591 LLGACVIHGNVE 602
           ++ +   +G  E
Sbjct: 521 MISSFAQNGEPE 532


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/666 (35%), Positives = 384/666 (57%), Gaps = 18/666 (2%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIIT---SGPLFTHLRSSLVRAY--- 57
           P  HT P        +V+  AA  +IA  + +H    T    G +F  + S+L++ Y   
Sbjct: 144 PDSHTFPY-------VVKSCAALGAIALGRLVHRTARTLGLDGDMF--VGSALIKMYANG 194

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G + + R +FD M+ER   L+N +M  Y + G+   ++++F G +R     P+  T    
Sbjct: 195 GLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELF-GDMRASGCEPNFATLACF 253

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +      +    G+ LH   +  G + +  V N L++MY     +    K+F  M    +
Sbjct: 254 LSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDL 313

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V+WN +ISG  +N +  +AL++F  M KSG+ PD  ++VS+LPA   L     G+ +H  
Sbjct: 314 VTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGY 373

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +    +  ++   +ALVD+Y KC +V  A+ V+D     DVV  ++MI+GY LNG  + A
Sbjct: 374 IVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEA 433

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + +F+ +  +G+RPN++ I S+L AC+S+  +K G+ LH++ +K   E    VE+AL+DM
Sbjct: 434 VKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDM 493

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAKC  + LS  +F++ S K  V WN++++    NG   +A+ LFR+M +E V+ ++ T+
Sbjct: 494 YAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTI 553

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +S+L A A L  +     IH  +I+    + +   + LID+Y KCG+LE AH++F  +P 
Sbjct: 554 SSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMP- 612

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            +K+ V W+ IIA YG +G  + +VSL + M + G + + VTF + + AC+H G + EGL
Sbjct: 613 -EKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGL 671

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
            LF  M E +Q   R +H+ C+VDL  RAG+LD+A +LI  MP KP   +WGALL AC +
Sbjct: 672 RLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRV 731

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           H NVEL E+A++ LF+L+P N G YVL+S + +   RW     VR +M +  ++K P +S
Sbjct: 732 HRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYS 791

Query: 658 LIEVRN 663
            ++V N
Sbjct: 792 WVDVNN 797



 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 149/492 (30%), Positives = 245/492 (49%), Gaps = 10/492 (2%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFD-MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           V++ C   +   LG+ +HGR +  G    DT +   L+ MY+     + A  VF ++   
Sbjct: 45  VLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRG 104

Query: 176 SV---VSWNTLISGYFKNAYAKEALVVF--DWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
           +    + WN LI G       + AL+ +   W   S   PD  +   V+ +C  L  I +
Sbjct: 105 AAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIAL 164

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
           GR++H       L  ++   +AL+ MY   G + +AR VFD M+ERD V W  M++GY  
Sbjct: 165 GRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVK 224

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
            G V +A+ LF  M+  G  PN  T+   LS  ++   L  G  LH   +K  LE EV V
Sbjct: 225 AGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAV 284

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
              L+ MYAKC  +   +++F    +   V WN +++GCV NG   +A+ LF  M    +
Sbjct: 285 ANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGI 344

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
            P+  TL SLLPA   L    Q   +H Y++R      V + + L+DIY KC ++  A  
Sbjct: 345 RPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQS 404

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           ++     K  D+V+ S +I+GY ++G  + AV +F+ +++ G++PN V   S L AC+  
Sbjct: 405 VYDS--SKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASM 462

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
             +  G +L ++ L+N     R    + ++D+  + GRLD ++ +   +  K     W +
Sbjct: 463 AAMKLGQELHSYALKNAYE-GRCYVESALMDMYAKCGRLDLSHYIFSKISAK-DEVTWNS 520

Query: 591 LLGACVIHGNVE 602
           ++ +   +G  E
Sbjct: 521 MISSFAQNGEPE 532


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 255/743 (34%), Positives = 386/743 (51%), Gaps = 114/743 (15%)

Query: 34  QLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           Q+HA ++ +G  +   L S L+  Y   G V + R +FD+MSER+ F +  +M+MY   G
Sbjct: 110 QVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLG 169

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT---------DLAWRKLGIALHGRVLIT 140
              +++K+F  M+  G   PD++ +P V KAC+         D+    L I   G   + 
Sbjct: 170 DYEETIKLFYLMVNEG-VRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVK 228

Query: 141 G--FDM--------------------DTFVGNCLIAMYMNFGEVKAARKVFDAM------ 172
           G   DM                    D F+ N +++ Y + GE K A K    M      
Sbjct: 229 GSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVK 288

Query: 173 ----------------------------------WEHSVVSWNTLISGYFKNAYAKEALV 198
                                             ++ +VVSW  LI+G  +N Y  EAL 
Sbjct: 289 PDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALS 348

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDMY 257
           VF  M+  GV+P+  ++ S + AC  L  +  GR IH   +    L  ++   N+LVD Y
Sbjct: 349 VFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYY 408

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG------------------------- 292
            KC SV  AR  F  + + D+V+W +M+ GYAL G                         
Sbjct: 409 AKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWN 468

Query: 293 ----------DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
                     D + AL  FQ M   G+ PN+ TI   L+AC  +  LK G+ +H + ++ 
Sbjct: 469 GLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRN 528

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
           ++E    V +ALI MY+ C+ ++++  VF+  S +  V WN+I++ C  +G +  A++L 
Sbjct: 529 HIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLL 588

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
           R+M +  VE N  T+ S LPA + LA L+Q   IH ++IR G  +   +   LID+Y +C
Sbjct: 589 REMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRC 648

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           GS++ + +IF  +P   +D+V W+V+I+ YGMHG G  AV+LF++    G++PN +TFT+
Sbjct: 649 GSIQKSRRIFDLMP--QRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTN 706

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
            L ACSH GL++EG   F  M   +      + Y C+VDLL RAG+ +E  + I  MP +
Sbjct: 707 LLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFE 766

Query: 583 PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642
           P  AVWG+LLGAC IH N +L E AA++LFELEP++ GNYVL++ +YSA  RW+DA  +R
Sbjct: 767 PNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIR 826

Query: 643 DVMDEKGLRKAPAHSLIEVRNIL 665
            +M E+G+ K P  S IEV+  L
Sbjct: 827 CLMKERGVTKPPGCSWIEVKRKL 849



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 137/528 (25%), Positives = 238/528 (45%), Gaps = 68/528 (12%)

Query: 108 NPDN--YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
           NPD     Y  +++ C  L   +LG  +H ++++ G D+  F+G+ L+ +Y   G V+ A
Sbjct: 84  NPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDA 143

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           R++FD M E +V SW  ++  Y      +E + +F  M+  GV PD      V  AC  L
Sbjct: 144 RRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSEL 203

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           K   +G+ +++ +       N     +++DM++KCG ++ AR  F+ +  +DV  W  M+
Sbjct: 204 KNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMV 263

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           +GY   G+ + AL     M+  GV+P+ +T  +++S      Y + G+   A        
Sbjct: 264 SGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISG-----YAQSGQFEEA-------- 310

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
                    ++M               +  K   V W A++AG   NG   +A+ +FR+M
Sbjct: 311 -----SKYFLEMGG------------LKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKM 353

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL-SVVEVSTGLIDIYSKCGS 464
           ++E V+PN  T+ S + A   L+ L+    IH Y I+   L S + V   L+D Y+KC S
Sbjct: 354 VLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRS 413

Query: 465 LESAHKIFSEIPIKD---------------------------------KDIVVWSVIIAG 491
           +E A + F  I   D                                  DI+ W+ ++ G
Sbjct: 414 VEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTG 473

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           +  +G G+ A+  F+ M   G+ PN  T + AL AC     L  G ++  ++L NH   S
Sbjct: 474 FTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELS 533

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
                + ++ +      L+ A  +   +  +    VW +++ AC   G
Sbjct: 534 TGVG-SALISMYSGCDSLEVACSVFSELSTRDV-VVWNSIISACAQSG 579


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/634 (36%), Positives = 367/634 (57%), Gaps = 8/634 (1%)

Query: 34  QLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           QLH F++ SG     ++ +SL+  Y   G++   R++FD++SE+++  + T++  Y + G
Sbjct: 150 QLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCG 209

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
            S  SL++F  M R     PD Y    V+ AC+ L + + G  +H  VL  G +MD  V 
Sbjct: 210 RSAVSLELFAQM-RETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVV 268

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N LI  Y     VKA RK+FD M   +++SW T+ISGY +N++  EA+ +F  M + G +
Sbjct: 269 NVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWK 328

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PD  +  SVL +CG  + +E GR +H       L  +    N L+DMY K   + +A+ V
Sbjct: 329 PDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKV 388

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           FD M+E++V+++ +MI GY+    +  AL LF  M+     P+ LT  SLL   +SL+ L
Sbjct: 389 FDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFAL 448

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           +  + +H   IK  +  ++   +ALID+Y+KC+ VK +  VF   ++K  V WNA+  G 
Sbjct: 449 ELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGY 508

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
             +    +A++L+  +     +PN+ T  +L+ A + LA L+     H  L++ G     
Sbjct: 509 TQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCP 568

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            V+  L+D+Y+KCGS+E A K+F+    +D  +V W+ +I+ +  HG  E A+ +F+EM+
Sbjct: 569 FVTNALVDMYAKCGSIEEARKMFNSSIWRD--VVCWNSMISTHAQHGEAEEALGMFREMM 626

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           + G+QPN VTF + L ACSH G +++GL+ FN M          +HY C+V LLGR+G+L
Sbjct: 627 KEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSM-PGFGIKPGTEHYACVVSLLGRSGKL 685

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629
            EA + I  MP++P   VW +LL AC I GNVELG+ AA+     +P++ G+Y+LLS ++
Sbjct: 686 FEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIF 745

Query: 630 SAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           ++   W D + VRD MD   + K P  S IEV N
Sbjct: 746 ASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNN 779



 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 201/632 (31%), Positives = 325/632 (51%), Gaps = 40/632 (6%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRI 65
           PK       L+Q   +   I   K +H  II SG        ++  ++      V N R+
Sbjct: 25  PKRREFA-NLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARV 83

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD+M  ++   +++++ MY+Q G S ++L +F+ + R    +P+ +    VI+ACT L 
Sbjct: 84  VFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLG 143

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             + G  LHG V+ +GFD D +VG  LI  Y   G ++ AR VFD + E + V+W T+I+
Sbjct: 144 VVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIA 203

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY K   +  +L +F  M ++ V PD   V SVL AC  L+ +E G+ IH  V       
Sbjct: 204 GYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEM 263

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           +++  N L+D Y KC  V   R +FD+M  +++++WT+MI+GY  N     A+ LF  M 
Sbjct: 264 DVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMN 323

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
             G +P+     S+L++C S   L++GR +HA+TIK NLE +  V+  LIDMYAK NL+ 
Sbjct: 324 RLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLI 383

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + +VF   +++  + +NA++ G        +A+ELF +M V +  P+  T  SLL   A
Sbjct: 384 DAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSA 443

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            L  L+ +  IH  +I++G    +   + LID+YSKC  ++ A  +F E  + +KDIVVW
Sbjct: 444 SLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEE--MNEKDIVVW 501

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGGLLD 534
           + +  GY  H   E A+ L+  +  S  +PNE TF + + A S           H  L+ 
Sbjct: 502 NAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVK 561

Query: 535 EGLDLFNF----MLENHQTCSRADH---------------YTCIVDLLGRAGRLDEAYDL 575
            GLD   F    +++ +  C   +                +  ++    + G  +EA  +
Sbjct: 562 MGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGM 621

Query: 576 IRTM---PLKPTHAVWGALLGACVIHGNVELG 604
            R M    ++P +  + A+L AC   G VE G
Sbjct: 622 FREMMKEGIQPNYVTFVAVLSACSHAGRVEDG 653



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 140/475 (29%), Positives = 247/475 (52%), Gaps = 6/475 (1%)

Query: 29  IAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKM 84
           + G KQ+HA+++  G  +   + + L+  Y   + V   R LFD+M  ++   + T++  
Sbjct: 246 LEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISG 305

Query: 85  YAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDM 144
           Y QN    +++K+F  M RLG + PD +    V+ +C      + G  +H   +    + 
Sbjct: 306 YMQNSFDWEAMKLFGEMNRLG-WKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLES 364

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           D FV N LI MY     +  A+KVFD M E +V+S+N +I GY       EAL +F  M 
Sbjct: 365 DEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMR 424

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
                P   + VS+L     L  +E+ + IH L+    +  ++ A +AL+D+Y KC  V 
Sbjct: 425 VRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVK 484

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
           +AR VF+ M+E+D+V W +M  GY  + +   AL L+  +QF   +PN  T  +L++A S
Sbjct: 485 DARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAAS 544

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
           +L  L+ G+  H   +K  L+    V  AL+DMYAKC  ++ + ++F  +  +  V WN+
Sbjct: 545 NLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNS 604

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           +++    +G A +A+ +FR+M+ E ++PN  T  ++L A +    ++  +N    +  +G
Sbjct: 605 MISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFG 664

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
                E    ++ +  + G L  A +   ++PI+   I VW  +++   + G+ E
Sbjct: 665 IKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAI-VWRSLLSACRIAGNVE 718


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/623 (37%), Positives = 363/623 (58%), Gaps = 9/623 (1%)

Query: 46  FTHLRSSLVRAY---GHVSNVRILFDE--MSERSSFLYNTVMKMYAQNGASHDSLKMFLG 100
           F  + ++L+  Y   G +   R+LFD   M +     +N+++  +   G S ++L +F  
Sbjct: 182 FVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRR 241

Query: 101 MLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG 160
           M  +G    + YT+   ++AC    + K+G  +H  +L +    D +V N LIAMY N G
Sbjct: 242 MQEVG-VESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCG 300

Query: 161 EVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLP 220
           +++ A +VF +M     VSWNTL+SG  +N    +A+  F  M  SG +PD  SV++++ 
Sbjct: 301 QMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIA 360

Query: 221 ACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT 280
           A G    +  G  +H       +  N+   N+L+DMY KC  V      F+ M E+D+++
Sbjct: 361 ASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLIS 420

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           WT++I GYA N    +AL L + +Q E +  + + IGS+L ACS L   K  + +H + +
Sbjct: 421 WTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVL 480

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
           K  L  +++++ A++++Y +  LV  +  VF   + K  V W +++  CVHNGLA +A+E
Sbjct: 481 KGGL-ADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALE 539

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
           LF  ++   +EP+  TL S+L A A L+ L++   IH +LIR GF     ++  L+D+Y+
Sbjct: 540 LFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYA 599

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           +CG++E+A  IF+ +  K +D+++W+ +I   GMHG G+ A+ LF +M    V P+ +TF
Sbjct: 600 RCGTMENARNIFNYV--KQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITF 657

Query: 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
            + L+ACSH GL+ EG   F  M   ++     +HY C+VDLL R+  L+EAY  +R MP
Sbjct: 658 LALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMP 717

Query: 581 LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAEN 640
           ++P+  VW ALLGAC IH N +LGEVAAK L +L  EN GNYVL+S  ++A  RW D E 
Sbjct: 718 IEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEE 777

Query: 641 VRDVMDEKGLRKAPAHSLIEVRN 663
           VR +M    L+K P  S IEV N
Sbjct: 778 VRSIMKGNKLKKKPGCSWIEVEN 800



 Score =  258 bits (660), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 182/672 (27%), Positives = 327/672 (48%), Gaps = 60/672 (8%)

Query: 4   PSHHTLPKTTHLVIKLVQQY------------------------------AATKSIAGTK 33
           P +HTLP  +H  I L + +                              A+ K++   +
Sbjct: 7   PPNHTLPTFSHRPISLKEAFQSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQ 66

Query: 34  QLHA-FIITSGPLFT-HLRSSLVRAYGHVS---NVRILFDEMSERSSFLYNTVMKMYAQN 88
           QLHA F+ T   L +  L +  V  YG      +   +FD+MSER+ F +N ++      
Sbjct: 67  QLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSA 126

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   ++++++  M  LG  + D +T+P V+KAC     R+LG  +HG  +  G+    FV
Sbjct: 127 GRYVEAIELYKEMRVLG-VSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFV 185

Query: 149 GNCLIAMYMNFGEVKAARKVFDA--MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
            N LIAMY   G++  AR +FD+  M +   VSWN++IS +     + EAL +F  M + 
Sbjct: 186 CNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEV 245

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           GVE +  + VS L AC     I++GR IH ++       ++   NAL+ MY  CG + +A
Sbjct: 246 GVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDA 305

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
             VF  M  +D V+W ++++G   N    +A+  FQ MQ  G +P+ +++ ++++A    
Sbjct: 306 ERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRS 365

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             L  G  +HA+ IK  ++  + +  +LIDMY KC  VK     F    +K  + W  I+
Sbjct: 366 ANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTII 425

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           AG   N     A+ L R++ +E ++ +   + S+L A + L   +    IH Y+++ G  
Sbjct: 426 AGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLA 485

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
            ++ +   ++++Y +   ++ A  +F    I  KDIV W+ +I     +G    A+ LF 
Sbjct: 486 DIL-IQNAIVNVYGELALVDYARHVFES--INSKDIVSWTSMITCCVHNGLAIEALELFN 542

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY------TCIV 560
            ++++ ++P+ +T  S L+A +    L +G ++  F++       R   +        +V
Sbjct: 543 SLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLI-------RKGFFLEGLIANSLV 595

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN-- 618
           D+  R G ++ A ++   +  +    +W +++ A  +HG    G+ A     ++  EN  
Sbjct: 596 DMYARCGTMENARNIFNYVKQRDL-ILWTSMINANGMHG---CGKDAIDLFSKMTDENVL 651

Query: 619 PGNYVLLSKLYS 630
           P +   L+ LY+
Sbjct: 652 PDHITFLALLYA 663



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 169/572 (29%), Positives = 269/572 (47%), Gaps = 37/572 (6%)

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT-FVGNCLIAMYMNFGEVKAARK 167
           P    Y   ++ C        G  LH   L T   +D+ F+    + MY   G    A K
Sbjct: 44  PLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVK 103

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VFD M E ++ +WN +I          EA+ ++  M   GV  D  +   VL ACG  KE
Sbjct: 104 VFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKE 163

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR--MSERDVVTWTSMI 285
             +G  IH +      G  +   NAL+ MY KCG +  AR++FD   M + D V+W S+I
Sbjct: 164 RRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSII 223

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           + +   G+   AL LF+ MQ  GV  N+ T  S L AC    ++K GR +HA  +K N  
Sbjct: 224 SAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHF 283

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
            +V V  ALI MYA C  ++ + +VF     K  V WN +L+G V N +   A+  F+ M
Sbjct: 284 TDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDM 343

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
                +P+  ++ +++ A    A+L   M +H Y I++G  S + +   LID+Y KC  +
Sbjct: 344 QDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCV 403

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
           +     F  +P  +KD++ W+ IIAGY  +     A++L +++    +  + +   S L 
Sbjct: 404 KYMGSAFEYMP--EKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILL 461

Query: 526 ACS-----------HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYD 574
           ACS           HG +L  GL   + +++N            IV++ G    +D A  
Sbjct: 462 ACSGLKSEKLIKEIHGYVLKGGLA--DILIQN-----------AIVNVYGELALVDYARH 508

Query: 575 LIRTMPLKPTHAVWGALLGACVIHG-NVELGEVAAKWLFELEPENPGNYVLLSKLY--SA 631
           +  ++  K     W +++  CV +G  +E  E+    L E   E P    L+S LY  +A
Sbjct: 509 VFESINSKDI-VSWTSMITCCVHNGLAIEALELFNS-LIETNIE-PDLITLVSVLYAAAA 565

Query: 632 VRRWKDAENVRDVMDEKG--LRKAPAHSLIEV 661
           +   K  + +   +  KG  L    A+SL+++
Sbjct: 566 LSSLKKGKEIHGFLIRKGFFLEGLIANSLVDM 597


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 255/687 (37%), Positives = 375/687 (54%), Gaps = 56/687 (8%)

Query: 27  KSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVRILFDEM--SERSSFLYNTV 81
           K+I+  K +H  +++ G L  +L S L+  Y   G +S+   L      S+   + +N++
Sbjct: 39  KTISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSL 98

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           ++ Y  NG ++  L +F G++    + PDNYT+P V KAC +++  + G + H   L+TG
Sbjct: 99  IRSYGDNGCANKCLYLF-GLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTG 157

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
           F  + FVGN L+AMY     +  ARKVFD M    VVSWN++I  Y K    K AL +F 
Sbjct: 158 FISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFS 217

Query: 202 WMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
            M    G  PD  ++V+VLP C  L    +G+ +H       + +N+   N LVDMY KC
Sbjct: 218 RMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKC 277

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE------------- 307
           G ++EA  VF  MS +DVV+W +M+ GY+  G   +A+ LF+ MQ E             
Sbjct: 278 GMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAI 337

Query: 308 ----------------------GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
                                 G++PN +T+ S+LS C+S+  L  G+ +H + IK  ++
Sbjct: 338 SGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPID 397

Query: 346 C-------EVIVETALIDMYAKCNLVKLSFQVFARTSKKK--TVPWNAILAGCVHNGLAR 396
                   E +V   LIDMYAKC  V  +  +F   S K+   V W  ++ G   +G A 
Sbjct: 398 LRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDAN 457

Query: 397 KAVELFRQMLVEVVE--PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV-VEVST 453
           KA+EL  +M  E  +  PN  T++  L A A LA L+    IH Y +R    +V + VS 
Sbjct: 458 KALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSN 517

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            LID+Y+KCGS+  A  +F  +  K++  V W+ ++ GYGMHG+GE A+ +F EM + G 
Sbjct: 518 CLIDMYAKCGSISDARLVFDNMMAKNE--VTWTSLMTGYGMHGYGEEALGIFDEMRRIGF 575

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
           + + VT    L+ACSH G++D+G++ FN M          +HY C+VDLLGRAGRL+ A 
Sbjct: 576 KLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAAL 635

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633
            LI  MP++P   VW A L  C IHG VELGE AA+ + EL   + G+Y LLS LY+   
Sbjct: 636 RLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAG 695

Query: 634 RWKDAENVRDVMDEKGLRKAPAHSLIE 660
           RWKD   +R +M  KG++K P  S +E
Sbjct: 696 RWKDVTRIRSLMRHKGVKKRPGCSWVE 722


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 255/743 (34%), Positives = 385/743 (51%), Gaps = 114/743 (15%)

Query: 34  QLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           Q+HA ++ +G  +   L S L+  Y   G V + R +FD+MSER+ F +  +M+MY   G
Sbjct: 110 QVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLG 169

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT---------DLAWRKLGIALHGRVLIT 140
              +++K+F  M+  G   PD++ +P V KAC+         D+    L I   G   + 
Sbjct: 170 DYEETIKLFYLMVNEG-VRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVK 228

Query: 141 G--FDM--------------------DTFVGNCLIAMYMNFGEVKAARKVFDAM------ 172
           G   DM                    D F+ N +++ Y + GE K A K    M      
Sbjct: 229 GSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVK 288

Query: 173 ----------------------------------WEHSVVSWNTLISGYFKNAYAKEALV 198
                                             ++ +VVSW  LI+G  +N Y  EAL 
Sbjct: 289 PDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALS 348

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDMY 257
           VF  M+  GV+P+  ++ S + AC  L  +  GR IH   +    L  ++   N+LVD Y
Sbjct: 349 VFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYY 408

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG------------------------- 292
            KC SV  AR  F  + + D+V+W +M+ GYAL G                         
Sbjct: 409 AKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWN 468

Query: 293 ----------DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
                     D + AL  FQ M   G+ PN+ TI   L+AC  +  LK G+ +H + ++ 
Sbjct: 469 GLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRN 528

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
           ++E    V +ALI MY+ C+ ++++  VF+  S +  V WN+I++ C  +G +  A++L 
Sbjct: 529 HIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLL 588

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
           R+M +  VE N  T+ S LPA + LA L+Q   IH ++IR G  +   +   LID+Y +C
Sbjct: 589 REMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRC 648

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           GS++ + +IF  +P   +D+V W+V+I+ YGMHG G  AV+LF+     G++PN +TFT+
Sbjct: 649 GSIQKSRRIFDLMP--QRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTN 706

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
            L ACSH GL++EG   F  M   +      + Y C+VDLL RAG+ +E  + I  MP +
Sbjct: 707 LLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFE 766

Query: 583 PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642
           P  AVWG+LLGAC IH N +L E AA++LFELEP++ GNYVL++ +YSA  RW+DA  +R
Sbjct: 767 PNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIR 826

Query: 643 DVMDEKGLRKAPAHSLIEVRNIL 665
            +M E+G+ K P  S IEV+  L
Sbjct: 827 CLMKERGVTKPPGCSWIEVKRKL 849



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 137/528 (25%), Positives = 239/528 (45%), Gaps = 68/528 (12%)

Query: 108 NPDN--YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
           NPD     Y  +++ C  L   +LG  +H ++++ G D+  F+G+ L+ +Y   G V+ A
Sbjct: 84  NPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDA 143

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           R++FD M E +V SW  ++  Y      +E + +F  M+  GV PD      V  AC  L
Sbjct: 144 RRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSEL 203

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           K   +G+ +++ +       N     +++DM++KCG ++ AR  F+ +  +DV  W  M+
Sbjct: 204 KNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMV 263

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           +GY   G+ + AL     M+  GV+P+ +T  +++S      Y + G+   A        
Sbjct: 264 SGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISG-----YAQSGQFEEA-------- 310

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
            +  +E   +  +                 K   V W A++AG   NG   +A+ +FR+M
Sbjct: 311 SKYFLEMGGLKDF-----------------KPNVVSWTALIAGSEQNGYDFEALSVFRKM 353

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL-SVVEVSTGLIDIYSKCGS 464
           ++E V+PN  T+ S + A   L+ L+    IH Y I+   L S + V   L+D Y+KC S
Sbjct: 354 VLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRS 413

Query: 465 LESAHKIFSEIPIKD---------------------------------KDIVVWSVIIAG 491
           +E A + F  I   D                                  DI+ W+ ++ G
Sbjct: 414 VEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTG 473

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           +  +G G+ A+  F+ M   G+ PN  T + AL AC     L  G ++  ++L NH   S
Sbjct: 474 FTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELS 533

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
                + ++ +      L+ A  +   +  +    VW +++ AC   G
Sbjct: 534 TGVG-SALISMYSGCDSLEVACSVFSELSTRDV-VVWNSIISACAQSG 579


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/613 (38%), Positives = 355/613 (57%), Gaps = 6/613 (0%)

Query: 49  LRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN 108
           L S  VR +G +     +F +M+ER  F +N ++  YA+ G   ++L ++  ML +G   
Sbjct: 135 LLSMFVR-FGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVG-IR 192

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           PD YT+P V++ C  L     G  +H  V+  GF+ D  V N LI MY+  G++ +AR V
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           FD M     +SWN +ISGYF+N    E L +F  M +  V+PD  ++ SV+ AC  L + 
Sbjct: 253 FDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDE 312

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
            +GR +H  V        ++  N+L+ M+   G  +EA +VF +M  +D+V+WT+MI+GY
Sbjct: 313 RLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGY 372

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
             NG    A+  + +M+ EGV P+ +TI S+LSAC+ L  L +G  LH +  +  L   V
Sbjct: 373 EKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYV 432

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
           IV  +LIDMY+KC  +  + +VF R   K  + W +I+ G   N  + +A+  F+QM++ 
Sbjct: 433 IVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS 492

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            ++PN  TL S+L A A +  L     IH + +R G      +   L+D+Y +CG +E A
Sbjct: 493 -LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPA 551

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
              F+     +KD+  W++++ GY   G G  AV LF +M++S V P+E+TFTS L ACS
Sbjct: 552 WNQFNSC---EKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACS 608

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
             G++ +GL+ F  M           HY  +VDLLGRAGRL++AY+ I+ MP+ P  A+W
Sbjct: 609 RSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIW 668

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
           GALL AC I+ NVELGE+AA+ +FE++ ++ G Y+LL  LY+   +W +   VR +M E 
Sbjct: 669 GALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMREN 728

Query: 649 GLRKAPAHSLIEV 661
            L   P  S +EV
Sbjct: 729 RLTVDPGCSWVEV 741



 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 166/485 (34%), Positives = 259/485 (53%), Gaps = 16/485 (3%)

Query: 113 TYPIVIKACTDLAWRKL---GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           TY  +++ C    W++    G  +H  V  T   +   +GN L++M++ FG++  A  VF
Sbjct: 96  TYIALLRLCE---WKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVF 152

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
             M E  + SWN L+ GY K  Y  EAL ++  ML  G+ PD  +   VL  CG L ++ 
Sbjct: 153 GKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLA 212

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
            GR +H  V       ++   NAL+ MYVKCG +  ARLVFDRM  RD ++W +MI+GY 
Sbjct: 213 RGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYF 272

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            N      L LF +M+   V P+ +T+ S++SAC +L   + GR +H + IK     EV 
Sbjct: 273 ENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVS 332

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           V  +LI M++       +  VF++   K  V W A+++G   NGL  KAVE +  M  E 
Sbjct: 333 VNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEG 392

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           V P++ T+ S+L A A L  L + + +H +  R G  S V V+  LID+YSKC  ++ A 
Sbjct: 393 VVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKAL 452

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
           ++F  IP  +K+++ W+ II G  ++     A+  F++M+ S ++PN VT  S L AC+ 
Sbjct: 453 EVFHRIP--NKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACAR 509

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
            G L  G ++    L   +T    D +    ++D+  R GR++ A++   +   +   A 
Sbjct: 510 IGALSCGKEIHAHAL---RTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS--CEKDVAS 564

Query: 588 WGALL 592
           W  LL
Sbjct: 565 WNILL 569



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 140/456 (30%), Positives = 231/456 (50%), Gaps = 11/456 (2%)

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
           N+LI         ++AL+  D M +  V  +  + +++L  C + +    G  +H  V+ 
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 241 G--RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
              RLG  +   NAL+ M+V+ G + EA  VF +M+ERD+ +W  ++ GYA  G    AL
Sbjct: 123 TVTRLGVRLG--NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEAL 180

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
            L+  M + G+RP+  T   +L  C  L  L RGR +H   I+   E +V V  ALI MY
Sbjct: 181 NLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMY 240

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
            KC  +  +  VF R  ++  + WNA+++G   N +  + + LF  M    V+P+  T+ 
Sbjct: 241 VKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMT 300

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           S++ A   L D +    +H Y+I+ GF++ V V+  LI ++S  G  + A  +FS++   
Sbjct: 301 SVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEF- 359

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
            KD+V W+ +I+GY  +G  E AV  +  M   GV P+E+T  S L AC+  GLLD+G+ 
Sbjct: 360 -KDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIM 418

Query: 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
           L  F      T S       ++D+  +   +D+A ++   +P K   +    +LG  + +
Sbjct: 419 LHEFADRTGLT-SYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNY 477

Query: 599 GNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRR 634
            + E      + +  L+P    N V L  + SA  R
Sbjct: 478 RSFEALFFFQQMILSLKP----NSVTLVSVLSACAR 509


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/613 (38%), Positives = 355/613 (57%), Gaps = 6/613 (0%)

Query: 49  LRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN 108
           L S  VR +G +     +F +M+ER  F +N ++  YA+ G   ++L ++  ML +G   
Sbjct: 135 LLSMFVR-FGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVG-IR 192

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           PD YT+P V++ C  L     G  +H  V+  GF+ D  V N LI MY+  G++ +AR V
Sbjct: 193 PDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLV 252

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           FD M     +SWN +ISGYF+N    E L +F  M +  V+PD  ++ SV+ AC  L + 
Sbjct: 253 FDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDE 312

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
            +GR +H  V        ++  N+L+ M+   G  +EA +VF +M  +D+V+WT+MI+GY
Sbjct: 313 RLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGY 372

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
             NG    A+  + +M+ EGV P+ +TI S+LSAC+ L  L +G  LH +  +  L   V
Sbjct: 373 EKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYV 432

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
           IV  +LIDMY+KC  +  + +VF R   K  + W +I+ G   N  + +A+  F+QM++ 
Sbjct: 433 IVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS 492

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            ++PN  TL S+L A A +  L     IH + +R G      +   L+D+Y +CG +E A
Sbjct: 493 -LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPA 551

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
              F+     +KD+  W++++ GY   G G  AV LF +M++S V P+E+TFTS L ACS
Sbjct: 552 WNQFNSC---EKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACS 608

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
             G++ +GL+ F  M           HY  +VDLLGRAGRL++AY+ I+ MP+ P  A+W
Sbjct: 609 RSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIW 668

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
           GALL AC I+ NVELGE+AA+ +FE++ ++ G Y+LL  LY+   +W +   VR +M E 
Sbjct: 669 GALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMREN 728

Query: 649 GLRKAPAHSLIEV 661
            L   P  S +EV
Sbjct: 729 RLTVDPGCSWVEV 741



 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 166/485 (34%), Positives = 259/485 (53%), Gaps = 16/485 (3%)

Query: 113 TYPIVIKACTDLAWRKL---GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           TY  +++ C    W++    G  +H  V  T   +   +GN L++M++ FG++  A  VF
Sbjct: 96  TYIALLRLCE---WKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFGDLVEAWYVF 152

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
             M E  + SWN L+ GY K  Y  EAL ++  ML  G+ PD  +   VL  CG L ++ 
Sbjct: 153 GKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLA 212

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
            GR +H  V       ++   NAL+ MYVKCG +  ARLVFDRM  RD ++W +MI+GY 
Sbjct: 213 RGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYF 272

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            N      L LF +M+   V P+ +T+ S++SAC +L   + GR +H + IK     EV 
Sbjct: 273 ENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVS 332

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           V  +LI M++       +  VF++   K  V W A+++G   NGL  KAVE +  M  E 
Sbjct: 333 VNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEG 392

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           V P++ T+ S+L A A L  L + + +H +  R G  S V V+  LID+YSKC  ++ A 
Sbjct: 393 VVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKAL 452

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
           ++F  IP  +K+++ W+ II G  ++     A+  F++M+ S ++PN VT  S L AC+ 
Sbjct: 453 EVFHRIP--NKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACAR 509

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
            G L  G ++    L   +T    D +    ++D+  R GR++ A++   +   +   A 
Sbjct: 510 IGALSCGKEIHAHAL---RTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS--CEKDVAS 564

Query: 588 WGALL 592
           W  LL
Sbjct: 565 WNILL 569



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 140/456 (30%), Positives = 231/456 (50%), Gaps = 11/456 (2%)

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
           N+LI         ++AL+  D M +  V  +  + +++L  C + +    G  +H  V+ 
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 241 G--RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
              RLG  +   NAL+ M+V+ G + EA  VF +M+ERD+ +W  ++ GYA  G    AL
Sbjct: 123 TVTRLGVRLG--NALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEAL 180

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
            L+  M + G+RP+  T   +L  C  L  L RGR +H   I+   E +V V  ALI MY
Sbjct: 181 NLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMY 240

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
            KC  +  +  VF R  ++  + WNA+++G   N +  + + LF  M    V+P+  T+ 
Sbjct: 241 VKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMT 300

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           S++ A   L D +    +H Y+I+ GF++ V V+  LI ++S  G  + A  +FS++   
Sbjct: 301 SVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEF- 359

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
            KD+V W+ +I+GY  +G  E AV  +  M   GV P+E+T  S L AC+  GLLD+G+ 
Sbjct: 360 -KDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIM 418

Query: 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
           L  F      T S       ++D+  +   +D+A ++   +P K   +    +LG  + +
Sbjct: 419 LHEFADRTGLT-SYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNY 477

Query: 599 GNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRR 634
            + E      + +  L+P    N V L  + SA  R
Sbjct: 478 RSFEALFFFQQMILSLKP----NSVTLVSVLSACAR 509


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 262/713 (36%), Positives = 389/713 (54%), Gaps = 68/713 (9%)

Query: 8   TLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY-------GHV 60
           T   TT L   L  Q    KS+A  + +H  ++  G    H  + ++  Y         +
Sbjct: 24  TASSTTDLTSTLFHQ---CKSLASAELIHQQLLVQG--LPHDPTHIISMYLTFNSPAKAL 78

Query: 61  SNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKA 120
           S +R L    S  + F +N +++     G   D L+++  M RLG + PD+YT+P V+KA
Sbjct: 79  SVLRRL--HPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLG-WRPDHYTFPFVLKA 135

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV--- 177
           C ++   + G ++H  V  +GF+ + FVGN L++MY   G  + AR+VFD M E  V   
Sbjct: 136 CGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDL 195

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           VSWN++++ Y +   +  A+ +F+ M +  G+ PD  S+V+VLPAC  +     G+ +H 
Sbjct: 196 VSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHG 255

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
                 L +++   NA+VDMY KCG + EA  VF+RM  +DVV+W +M+ GY+  G   +
Sbjct: 256 YALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDD 315

Query: 297 ALGLFQLMQFE-----------------------------------GVRPNSLTIGSLLS 321
           ALGLF+ ++ E                                   G  PN +T+ SLLS
Sbjct: 316 ALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLS 375

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECE-------VIVETALIDMYAKCNLVKLSFQVFART 374
            C+    L  G+  H   IK  L  +       ++V  ALIDMY+KC   K +  +F   
Sbjct: 376 GCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLI 435

Query: 375 SKK--KTVPWNAILAGCVHNGLARKAVELFRQMLV--EVVEPNDATLNSLLPAYAILADL 430
             K    V W  ++ G   +G A +A+ELF QML     V PN  T++  L A A L  L
Sbjct: 436 PPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGAL 495

Query: 431 QQAMNIHCYLIRYGFLS-VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           +    IH Y++R  F S ++ V+  LID+YSK G +++A  +F  +    ++ V W+ ++
Sbjct: 496 RFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM--HQRNGVSWTSLM 553

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
            GYGMHG GE A+ +F EM + G+ P+ VTF   L+ACSH G++D+G++ FN M ++   
Sbjct: 554 TGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGV 613

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
              A+HY C+VDLL RAGRLDEA +LIR MP+KPT AVW ALL AC ++ NVELGE AA 
Sbjct: 614 VPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAAN 673

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
            L ELE  N G+Y LLS +Y+  R WKD   +R +M   G++K P  S ++ R
Sbjct: 674 QLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGR 726



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 171/577 (29%), Positives = 275/577 (47%), Gaps = 72/577 (12%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAYGHV-- 60
           P H+T P     V+K   +  + +  A    +HA +  SG  +   + + LV  YG    
Sbjct: 124 PDHYTFP----FVLKACGEIPSFRCGA---SVHAVVFASGFEWNVFVGNGLVSMYGRCGA 176

Query: 61  -SNVRILFDEMSERSS---FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
             N R +FDEM ER       +N+++  Y Q G S  ++KMF  M       PD  +   
Sbjct: 177 WENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVN 236

Query: 117 VIKACTDL-AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           V+ AC  + AW + G  +HG  L +G   D FVGN ++ MY   G ++ A KVF+ M   
Sbjct: 237 VLPACASVGAWSR-GKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK 295

Query: 176 SVVSWNTLISGY-----FKNA-------------------------YAK-----EALVVF 200
            VVSWN +++GY     F +A                         YA+     EAL VF
Sbjct: 296 DVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVF 355

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL-------GKNIAAWNAL 253
             M   G EP+  ++VS+L  C     +  G+  H       L       G ++   NAL
Sbjct: 356 RQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINAL 415

Query: 254 VDMYVKCGSVNEARLVFDRMSERD--VVTWTSMINGYALNGDVRNALGLF-QLMQFEG-V 309
           +DMY KC S   AR +FD +  +D  VVTWT +I G A +G+   AL LF Q++Q +  V
Sbjct: 416 IDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFV 475

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI-VETALIDMYAKCNLVKLSF 368
            PN+ TI   L AC+ L  L+ GR +HA+ ++   E  ++ V   LIDMY+K   V  + 
Sbjct: 476 MPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAAR 535

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
            VF    ++  V W +++ G   +G   +A+++F +M    + P+  T   +L A +   
Sbjct: 536 VVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSG 595

Query: 429 DLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
            + Q +N    + + +G +   E    ++D+ S+ G L+ A ++   +P+K     VW  
Sbjct: 596 MVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTP-AVWVA 654

Query: 488 IIAGYGMHGH---GETAVSLFKEMVQSGVQPNEVTFT 521
           +++   ++ +   GE A +   E+ +SG   N+ ++T
Sbjct: 655 LLSACRVYANVELGEYAANQLLEL-ESG---NDGSYT 687


>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 638

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/599 (38%), Positives = 360/599 (60%), Gaps = 11/599 (1%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           M++R+ + +NT++K  +++      +  F  M R  E  PDN+T P+ +KAC +L   K 
Sbjct: 1   MTKRTLYQWNTLLKSLSRDKHWEQVMCHFSQMFR-DEEKPDNFTLPVALKACGELREVKY 59

Query: 130 GIALHG---RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
           G  +HG   + +  G D+  +VG+ LI MY+  G +  A ++F+ + +  +V+W++++SG
Sbjct: 60  GEMIHGFLKKNVTLGSDL--YVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSG 117

Query: 187 YFKNAYAKEALVVFDWM-LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           + KN    +A+  F  M   S V PD  ++++++ AC  L    +GR +H  V       
Sbjct: 118 FEKNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSN 177

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           +++  N+L++ Y K  +  EA  +F  M+E+DV++W+++I  Y  NG    AL +F  M 
Sbjct: 178 DLSLVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMI 237

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            +G  PN  T+  +L AC++   L++GR  H   I++ LE EV V TAL+DMY KC   +
Sbjct: 238 DDGTEPNVATVLCVLQACAAANDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPE 297

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN-SLLPAY 424
            ++ VF+R  KK  V W A+++G   NG+A +++E F  ML+E     DA L   +L + 
Sbjct: 298 EAYAVFSRIPKKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMLKVLGSC 357

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           + L  L+QA   H Y+I+YGF S   +   L+++YS+CGSL +A K+F+EI +KD   VV
Sbjct: 358 SELGFLKQAECFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIALKD--TVV 415

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSG-VQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
           W+ +I GYG+HG G  A+  F  MV+S  V+PNEVTF S L ACSH GL+ EGL +F  M
Sbjct: 416 WTSLITGYGIHGKGTKALETFNHMVRSSEVKPNEVTFLSILSACSHAGLIHEGLRIFELM 475

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
           + +++     +HY  +VDLLGR G LD A ++ + MP  PT  + G LLGAC IH N E+
Sbjct: 476 VNDYRLAPNLEHYAVLVDLLGRVGELDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEM 535

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
            E  AK LFELE  + G Y+L+S +Y     W++ E +R+ + ++G++K  A SLIE+R
Sbjct: 536 AETVAKQLFELESNHAGYYMLMSNMYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIR 594



 Score =  242 bits (618), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 147/515 (28%), Positives = 267/515 (51%), Gaps = 16/515 (3%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLR--SSLVRAY---G 58
           P + TLP         ++     + +   + +H F+  +  L + L   SSL+  Y   G
Sbjct: 39  PDNFTLPVA-------LKACGELREVKYGEMIHGFLKKNVTLGSDLYVGSSLIYMYVKCG 91

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
            ++    +F+E+ +     +++++  + +NG+ + +++ F  M    +  PD  T   ++
Sbjct: 92  RMTEALRMFNELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMATASDVTPDRVTLITLV 151

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
            ACT L+  +LG  +HG V+  GF  D  + N L+  Y      K A  +F  M E  V+
Sbjct: 152 SACTKLSNSRLGRCVHGFVMRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMMAEKDVI 211

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           SW+T+I+ Y +N  A EAL VF+ M+  G EP+ A+V+ VL AC    ++E GR  HEL 
Sbjct: 212 SWSTVIACYVQNGAAAEALRVFNEMIDDGTEPNVATVLCVLQACAAANDLEQGRKTHELA 271

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               L   +    ALVDMY+KC S  EA  VF R+ ++DVV+W ++I+G+ LNG    ++
Sbjct: 272 IRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPKKDVVSWVALISGFTLNGMAHRSI 331

Query: 299 GLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
             F +M  E   RP+++ +  +L +CS L +LK+    H++ IK   +    +  +L+++
Sbjct: 332 EEFSIMLLENNTRPDAILMLKVLGSCSELGFLKQAECFHSYVIKYGFDSNPFIGASLVEL 391

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML-VEVVEPNDAT 416
           Y++C  +  + +VF   + K TV W +++ G   +G   KA+E F  M+    V+PN+ T
Sbjct: 392 YSRCGSLGNASKVFNEIALKDTVVWTSLITGYGIHGKGTKALETFNHMVRSSEVKPNEVT 451

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
             S+L A +    + + + I   ++  Y     +E    L+D+  + G L++A +I   +
Sbjct: 452 FLSILSACSHAGLIHEGLRIFELMVNDYRLAPNLEHYAVLVDLLGRVGELDTAIEITKRM 511

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           P      ++   ++    +H +GE A ++ K++ +
Sbjct: 512 PFSPTPQIL-GTLLGACRIHQNGEMAETVAKQLFE 545


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 262/711 (36%), Positives = 387/711 (54%), Gaps = 64/711 (9%)

Query: 8   TLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG----PLFTHLRSSLVRAYGHVSNV 63
           T   TT L   L  Q    KS+A  +  H  ++  G    P  TH+ S  +        +
Sbjct: 43  TASSTTDLTSTLFHQ---CKSLASAELTHQQLLVQGLPHDP--THIISMYLTFNSPAKAL 97

Query: 64  RILFD-EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
            +L     S  + F +N +++     G   D L+++  M RLG + PD+YT+P V+KAC 
Sbjct: 98  SVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLG-WRPDHYTFPFVLKACG 156

Query: 123 DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV---VS 179
           ++   + G ++H  V  +GF+ + FVGN L++MY   G  + AR+VFD M E  V   VS
Sbjct: 157 EIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVS 216

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           WN++++ Y +   +  A+ +F+ M +  G+ PD  S+V+VLPAC  +     G+ +H   
Sbjct: 217 WNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYA 276

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               L +++   NA+VDMY KCG + EA  VF+RM  +DVV+W +M+ GY+  G   +AL
Sbjct: 277 LRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDAL 336

Query: 299 GLFQLMQFE-----------------------------------GVRPNSLTIGSLLSAC 323
           GLF+ ++ E                                   G  PN +T+ SLLS C
Sbjct: 337 GLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGC 396

Query: 324 SSLYYLKRGRSLHAWTIKQNLECE-------VIVETALIDMYAKCNLVKLSFQVFARTSK 376
           +S   L  G+  H   IK  L  +       ++V  ALIDMY+KC   K +  +F     
Sbjct: 397 ASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPP 456

Query: 377 K--KTVPWNAILAGCVHNGLARKAVELFRQMLV--EVVEPNDATLNSLLPAYAILADLQQ 432
           K    V W  ++ G   +G A +A+ELF QML     V PN  T++  L A A L  L+ 
Sbjct: 457 KDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRF 516

Query: 433 AMNIHCYLIRYGFLS-VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
              IH Y++R  F S ++ V+  LID+YSK G +++A  +F  +    ++ V W+ ++ G
Sbjct: 517 GRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM--HQRNGVSWTSLMTG 574

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           YGMHG GE A+ +F EM +  + P+ VTF   L+ACSH G++D+G++ FN M ++     
Sbjct: 575 YGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVP 634

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
            A+HY C+VDLL RAGRLDEA +LIR MP+KPT AVW ALL AC ++ NVELGE AA  L
Sbjct: 635 GAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQL 694

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
            ELE  N G+Y LLS +Y+  R WKD   +R +M   G++K P  S ++ R
Sbjct: 695 LELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGR 745



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 172/577 (29%), Positives = 276/577 (47%), Gaps = 72/577 (12%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAYGHV-- 60
           P H+T P     V+K   +  + +  A    +HA +  SG  +   + + LV  YG    
Sbjct: 143 PDHYTFP----FVLKACGEIPSFRCGA---SVHAVVFASGFEWNVFVGNGLVSMYGRCGA 195

Query: 61  -SNVRILFDEMSERSS---FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
             N R +FDEM ER       +N+++  Y Q G S  ++KMF  M       PD  +   
Sbjct: 196 WENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVN 255

Query: 117 VIKACTDL-AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           V+ AC  + AW + G  +HG  L +G   D FVGN ++ MY   G ++ A KVF+ M   
Sbjct: 256 VLPACASVGAWSR-GKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVK 314

Query: 176 SVVSWNTLISGY-----FKNA-------------------------YAK-----EALVVF 200
            VVSWN +++GY     F +A                         YA+     EAL VF
Sbjct: 315 DVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVF 374

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL-------GKNIAAWNAL 253
             ML  G EP+  ++VS+L  C     +  G+  H       L       G ++   NAL
Sbjct: 375 RQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINAL 434

Query: 254 VDMYVKCGSVNEARLVFDRMSERD--VVTWTSMINGYALNGDVRNALGLF-QLMQFEG-V 309
           +DMY KC S   AR +FD +  +D  VVTWT +I G A +G+   AL LF Q++Q +  V
Sbjct: 435 IDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFV 494

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI-VETALIDMYAKCNLVKLSF 368
            PN+ TI   L AC+ L  L+ GR +HA+ ++   E  ++ V   LIDMY+K   V  + 
Sbjct: 495 MPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAAR 554

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
            VF    ++  V W +++ G   +G   +A+++F +M    + P+  T   +L A +   
Sbjct: 555 VVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSG 614

Query: 429 DLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
            + Q +N    + + +G +   E    ++D+ S+ G L+ A ++   +P+K     VW  
Sbjct: 615 MVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTP-AVWVA 673

Query: 488 IIAGYGMHGH---GETAVSLFKEMVQSGVQPNEVTFT 521
           +++   ++ +   GE A +   E+ +SG   N+ ++T
Sbjct: 674 LLSACRVYANVELGEYAANQLLEL-ESG---NDGSYT 706


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 239/644 (37%), Positives = 371/644 (57%), Gaps = 13/644 (2%)

Query: 27  KSIAGTKQLHAFIITSG---PLFTHLR-SSLVRAYGHVSNVRILFDEMSERSSFLYNTVM 82
           K+++  +++HA ++  G    L    +  SL  ++GHV   R++FD +     + +  ++
Sbjct: 50  KTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMI 109

Query: 83  KMYAQNGASHDSLKMFLGMLR--LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT 140
           + Y  N +  + ++ +   LR  L EY  DN  + IV+KAC++L     G  LH +++  
Sbjct: 110 RWYFLNDSYSEIVQFYNTRLRKCLNEY--DNVVFSIVLKACSELRETDEGRKLHCQIVKV 167

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           G   D+FV   L+ MY    EV+ +R+VFD + + +VV W ++I GY +N   KE LV+F
Sbjct: 168 G-SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLF 226

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           + M +  VE +  ++ S++ AC  L  +  G+ +H  V       N      L+D+Y KC
Sbjct: 227 NRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKC 286

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           G + +A  VFD +S  D+V+WT+MI GYA  G  R AL LF   +++ + PN++T  S+L
Sbjct: 287 GDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVL 346

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           SAC+    L  GRS+H   IK   E +   E AL+DMYAKC+++  +  VF     K  +
Sbjct: 347 SACAQTGSLNMGRSVHCLGIKLGSE-DATFENALVDMYAKCHMIGDARYVFETVFDKDVI 405

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            WN+I++G   NG A +A+ELF QM  + V P+  TL S+L A A +   +   ++H Y 
Sbjct: 406 AWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYA 465

Query: 441 IRYGFLS-VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           I+ G LS  V V T L++ Y+KCG  ESA  IF E+   +K+ + WS +I GYG+ G   
Sbjct: 466 IKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEM--GEKNTITWSAMIGGYGIQGDCS 523

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
            ++ LF +M++  ++PNEV FT+ L ACSH G+L EG   FN M + +       HY C+
Sbjct: 524 RSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACM 583

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENP 619
           VDLL RAGRL+EA D I  +P++P  ++ GA L  C +H   +LGEVA + + EL P+  
Sbjct: 584 VDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHPDKA 643

Query: 620 GNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
             YVL+S LY++  RW  A  V ++M ++GL K P  SL+++  
Sbjct: 644 CYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVDIET 687



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 157/321 (48%), Gaps = 16/321 (4%)

Query: 223 GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
           G  K +   R IH L+    L +++     LV +Y   G V  ARL+FDR+   D+ +W 
Sbjct: 47  GICKTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWK 106

Query: 283 SMINGYALNGDVRNALGLFQLMQFEGVR-------PNSLTIGSLLSACSSLYYLKRGRSL 335
            MI  Y LN          +++QF   R        +++    +L ACS L     GR L
Sbjct: 107 VMIRWYFLNDSYS------EIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKL 160

Query: 336 HAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLA 395
           H   +K     +  V T L+DMYAKC  V+ S +VF     +  V W +++ G V N   
Sbjct: 161 HCQIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCL 219

Query: 396 RKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGL 455
           ++ + LF +M   +VE N  TL SL+ A   L  L Q   +H Y+I+ GF     + T L
Sbjct: 220 KEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPL 279

Query: 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP 515
           +D+Y KCG +  A  +F E+     D+V W+ +I GY   G+   A+ LF +     + P
Sbjct: 280 LDLYFKCGDIRDAFSVFDELST--IDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLP 337

Query: 516 NEVTFTSALHACSHGGLLDEG 536
           N VT +S L AC+  G L+ G
Sbjct: 338 NTVTTSSVLSACAQTGSLNMG 358


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/648 (35%), Positives = 373/648 (57%), Gaps = 8/648 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERS 74
           LV+   A K+  G   L   + + G      + SSL++AY   G +     LFD + ++ 
Sbjct: 144 LVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKD 203

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
             ++N ++  YA+ GA    +K F  ++R+ + +P+  T+  V+  C       LG+ LH
Sbjct: 204 CVIWNVMLNGYAKCGALDSVIKGF-SVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLH 262

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           G V+++G D +  + N L++MY   G    A K+F  M     V+WN +ISGY ++   +
Sbjct: 263 GLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLME 322

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           E+L  F  M+ SGV PD  +  S+LP+    + +E  + IH  +    +  +I   +AL+
Sbjct: 323 ESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALI 382

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           D Y KC  V+ A+ +F + +  DVV +T+MI+GY  NG   ++L +F+ +    + PN +
Sbjct: 383 DAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEI 442

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T+ S+L     L  LK GR LH + IK+  +    +  A+IDMYAKC  + L++++F R 
Sbjct: 443 TLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERL 502

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
           SK+  V WN+++  C  +     A+++FRQM V  +  +  ++++ L A A L       
Sbjct: 503 SKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGK 562

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            IH ++I++   S V   + LID+Y+KCG+L++A  +F    +K+K+IV W+ IIA  G 
Sbjct: 563 AIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKT--MKEKNIVSWNSIIAACGN 620

Query: 495 HGHGETAVSLFKEMVQ-SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
           HG  + ++ LF EMV+ SG++P+++TF   + +C H G +DEG+  F  M E++    + 
Sbjct: 621 HGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQ 680

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
           +HY C+VDL GRAGRL EAY+ +++MP  P   VWG LLGAC +H NVEL EVA+  L +
Sbjct: 681 EHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMD 740

Query: 614 LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           L+P N G YVL+S  ++  R W+    VR +M E+ ++K P +S IE+
Sbjct: 741 LDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEI 788



 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 173/603 (28%), Positives = 310/603 (51%), Gaps = 14/603 (2%)

Query: 6   HHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIIT---SGPLFTHLRS-SLVRAYGHVS 61
             T+P+   L   L+Q  +    +   KQ+HAF+I    SG  +T  R   +    G  S
Sbjct: 31  EETIPRRLSL---LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFS 87

Query: 62  NVRILFDEMSERSSFL--YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           +   +F  +  R S +  +N+++  + +NG  + +L  +  ML  G  +PD  T+P ++K
Sbjct: 88  DCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFG-VSPDVSTFPCLVK 146

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           AC  L   K    L   V   G D + FV + LI  Y+ +G++    K+FD + +   V 
Sbjct: 147 ACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVI 206

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WN +++GY K       +  F  M    + P+  +   VL  C     I++G  +H LV 
Sbjct: 207 WNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVV 266

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
              +    +  N+L+ MY KCG  ++A  +F  MS  D VTW  MI+GY  +G +  +L 
Sbjct: 267 VSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLT 326

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
            F  M   GV P+++T  SLL + S    L+  + +H + ++ ++  ++ + +ALID Y 
Sbjct: 327 FFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYF 386

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           KC  V ++  +F++ +    V + A+++G +HNGL   ++E+FR ++   + PN+ TL S
Sbjct: 387 KCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVS 446

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           +LP   IL  L+    +H ++I+ GF +   +   +ID+Y+KCG +  A++IF    +  
Sbjct: 447 ILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFER--LSK 504

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
           +DIV W+ +I       +   A+ +F++M  SG+  + V+ ++AL AC++      G  +
Sbjct: 505 RDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAI 564

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
             FM++ H   S     + ++D+  + G L  A ++ +TM  K   + W +++ AC  HG
Sbjct: 565 HGFMIK-HSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVS-WNSIIAACGNHG 622

Query: 600 NVE 602
            ++
Sbjct: 623 KLK 625


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 244/685 (35%), Positives = 375/685 (54%), Gaps = 47/685 (6%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH---VSNVRILFDEMSERS 74
           +++  A  +     K +H  +   G  +  +L +SL+  Y     V++   +F  M+ R 
Sbjct: 62  VIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRD 121

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN--PDNYTYPIVIKACTDLAWRKLGIA 132
              +++++  YA  G +H + K F    R+ + N  P+  T+  ++KAC + +  + G  
Sbjct: 122 VVTWSSMIAAYA--GNNHPA-KAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRK 178

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H  V   G + D  V   LI MY   GE+  A +VF  M E +VVSW  +I    ++  
Sbjct: 179 IHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRK 238

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
             EA  +++ ML++G+ P+  + VS+L +C   + +  GR IH  ++   L  ++   NA
Sbjct: 239 LNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANA 298

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG--DVRNALGLFQL---MQFE 307
           L+ MY KC SV EAR +FDRMS+RDV++W++MI GYA +G  D  +   +FQL   M+ E
Sbjct: 299 LITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRRE 358

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           GV PN +T  S+L AC++   L++GR +HA   K   E +  ++TA+ +MYAKC  +  +
Sbjct: 359 GVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEA 418

Query: 368 FQVFARTSKKKTV-------------------------------PWNAILAGCVHNGLAR 396
            QVF++ + K  V                                WN ++AG   NG   
Sbjct: 419 EQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIV 478

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLI 456
           K  EL   M  E  +P+  T+ ++L A   LA L++   +H   ++ G  S   V+T LI
Sbjct: 479 KVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLI 538

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
            +YSKCG +  A  +F ++   ++D V W+ ++AGYG HG G  AV LFK M++  V PN
Sbjct: 539 GMYSKCGQVAEARTVFDKMS--NRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPN 596

Query: 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
           E+T T+ + ACS  GL+ EG ++F  M E+ +   R  HY C+VDLLGRAGRL EA + I
Sbjct: 597 EITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFI 656

Query: 577 RTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWK 636
           ++MP +P  +VW ALLGAC  H NV+L E AA  + ELEP     Y+ LS +Y+   RW 
Sbjct: 657 QSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWD 716

Query: 637 DAENVRDVMDEKGLRKAPAHSLIEV 661
           D+  VR VMD++GL+K    S IE+
Sbjct: 717 DSTKVRRVMDDRGLKKDRGESSIEI 741



 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 175/579 (30%), Positives = 290/579 (50%), Gaps = 54/579 (9%)

Query: 98  FLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYM 157
            LG+++      ++ TY  VI+ C      + G  +H ++   G ++D ++GN LI  Y 
Sbjct: 43  LLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYS 102

Query: 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVS 217
            F +V +A +VF  M    VV+W+++I+ Y  N +  +A   F+ M  + +EP+  + +S
Sbjct: 103 KFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLS 162

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           +L AC     +E GR IH +V    +  ++A   AL+ MY KCG ++ A  VF +M+ER+
Sbjct: 163 ILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERN 222

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
           VV+WT++I   A +  +  A  L++ M   G+ PN++T  SLL++C++   L RGR +H+
Sbjct: 223 VVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHS 282

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
              ++ LE ++IV  ALI MY KCN V+ + ++F R SK+  + W+A++AG   +G   K
Sbjct: 283 HISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDK 342

Query: 398 -----AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
                  +L  +M  E V PN  T  S+L A      L+Q   IH  L + GF     + 
Sbjct: 343 ESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQ 402

Query: 453 TGLIDIYSKCGS-------------------------------LESAHKIFSEIPIKDKD 481
           T + ++Y+KCGS                               L SA K+FSE+P   ++
Sbjct: 403 TAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPT--RN 460

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG----L 537
           +V W+++IAGY  +G       L   M   G QP+ VT  + L AC     L+ G     
Sbjct: 461 VVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHA 520

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
           +     LE+    +     T ++ +  + G++ EA  +   M  + T A W A+L     
Sbjct: 521 EAVKLGLESDTVVA-----TSLIGMYSKCGQVAEARTVFDKMSNRDTVA-WNAMLAGYGQ 574

Query: 598 HGN-VELGEVAAKWLFE-LEPENPGNYVLLSKLYSAVRR 634
           HG+ +E  ++  + L E + P    N + L+ + SA  R
Sbjct: 575 HGDGLEAVDLFKRMLKERVSP----NEITLTAVISACSR 609



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 126/417 (30%), Positives = 209/417 (50%), Gaps = 9/417 (2%)

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
           +EA+ +   + + G+  +  +   V+  C   +  E G+M+H+ +    +  +I   N+L
Sbjct: 38  REAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSL 97

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           ++ Y K   V  A  VF RM+ RDVVTW+SMI  YA N     A   F+ M    + PN 
Sbjct: 98  INFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNR 157

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
           +T  S+L AC++   L++GR +H       +E +V V TALI MY+KC  + ++ +VF +
Sbjct: 158 ITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHK 217

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
            +++  V W AI+     +    +A EL+ QML   + PN  T  SLL +      L + 
Sbjct: 218 MTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRG 277

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             IH ++   G  + + V+  LI +Y KC S++ A +IF  +    +D++ WS +IAGY 
Sbjct: 278 RRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMS--KRDVISWSAMIAGYA 335

Query: 494 MHGHGET-----AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
             G+ +         L + M + GV PN+VTF S L AC+  G L++G  +   + +   
Sbjct: 336 QSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGF 395

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
              R+   T I ++  + G + EA  +   M  K   A W + L   +  G++   E
Sbjct: 396 ELDRSLQ-TAIFNMYAKCGSIYEAEQVFSKMANKNVVA-WTSFLSMYIKCGDLSSAE 450



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 167/351 (47%), Gaps = 40/351 (11%)

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G +R A+ L  +++  G+  NS T G ++  C+     + G+ +H    +  +E ++ + 
Sbjct: 35  GRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLG 94

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
            +LI+ Y+K   V  + QVF R + +  V W++++A    N    KA + F +M    +E
Sbjct: 95  NSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIE 154

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           PN  T  S+L A    + L++   IH  +   G  + V V+T LI +YSKCG +  A ++
Sbjct: 155 PNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEV 214

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS--- 528
           F ++   ++++V W+ II     H     A  L+++M+Q+G+ PN VTF S L++C+   
Sbjct: 215 FHKMT--ERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPE 272

Query: 529 --------HGGLLDEGLD----LFNFMLENHQTCSRADHYTCIVDLLGR----------A 566
                   H  + + GL+    + N ++  +  C+       I D + +          A
Sbjct: 273 ALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIA 332

Query: 567 G----------RLDEAYDLIRTMPLK---PTHAVWGALLGACVIHGNVELG 604
           G           +DE + L+  M  +   P    + ++L AC  HG +E G
Sbjct: 333 GYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQG 383


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 239/634 (37%), Positives = 371/634 (58%), Gaps = 8/634 (1%)

Query: 34  QLHAFIITSGPLFTHLRS----SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           Q+  FII +G    HL      SL   +G  S    +F+ +  +   LY+ ++K YA+N 
Sbjct: 65  QILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNS 124

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
           +  D+L  FL M+   E       Y  +++ C +    K G  +HG ++  GF+ + FV 
Sbjct: 125 SLGDALCFFLRMM-CDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVM 183

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
             ++++Y    ++  A K+F+ M    +VSW TL++GY +N +AK AL +   M ++G +
Sbjct: 184 TAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQK 243

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PD  ++VS+LPA   +K + +GR IH           +   NAL+DMY KCGS   ARLV
Sbjct: 244 PDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLV 303

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F  M  + VV+W +MI+G A NG+   A   F  M  EG  P  +T+  +L AC++L  L
Sbjct: 304 FKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDL 363

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           +RG  +H    K  L+  V V  +LI MY+KC  V ++  +F    +K  V WNA++ G 
Sbjct: 364 ERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIF-NNLEKTNVTWNAMILGY 422

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
             NG  ++A+ LF  M  + ++ +  TL  ++ A A  +  +QA  IH   +R    + V
Sbjct: 423 AQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNV 482

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            VST L+D+Y+KCG++++A K+F    ++++ ++ W+ +I GYG HG G+  + LF EM 
Sbjct: 483 FVSTALVDMYAKCGAIKTARKLFD--MMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQ 540

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           +  V+PN++TF S + ACSH G ++EGL LF  M E++      DHY+ +VDLLGRAG+L
Sbjct: 541 KGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQL 600

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629
           D+A++ I+ MP+KP  +V GA+LGAC IH NVELGE AA+ LF+L+P+  G +VLL+ +Y
Sbjct: 601 DDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIY 660

Query: 630 SAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           ++   W     VR  M++KGL K P  S +E+RN
Sbjct: 661 ASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRN 694


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/687 (36%), Positives = 372/687 (54%), Gaps = 56/687 (8%)

Query: 27  KSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVRILFDEM--SERSSFLYNTV 81
           K+I+  K +H  +++ G L  +L S L+  Y   G +S+   L      S+   + +N++
Sbjct: 39  KTISQVKLIHQKLLSFGILTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSL 98

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           ++ Y  NG ++  L  F  M  L  + PDNYT+P V KAC +++  + G + H    +TG
Sbjct: 99  IRSYGNNGRANKCLSSFCLMHSL-SWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTG 157

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
           F  + FVGN L+AMY   G +  ARKVFD M    VVSWN++I  Y K    K AL +F 
Sbjct: 158 FMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFS 217

Query: 202 WMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
            M    G  PD  ++V+VLP C  +    +G+  H       + +N+   N LVDMY K 
Sbjct: 218 KMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKF 277

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE------------- 307
           G ++EA  VF  M  +DVV+W +M+ GY+  G   +A+ LF+ MQ E             
Sbjct: 278 GMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAI 337

Query: 308 ----------------------GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
                                 G++PN +T+ S+LS C+S+  L  G+ +H + IK  ++
Sbjct: 338 SGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMD 397

Query: 346 C-------EVIVETALIDMYAKCNLVKLSFQVFARTSKKK--TVPWNAILAGCVHNGLAR 396
                   E +V   LIDMYAKC  V ++  +F   S K+   V W  ++ G   +G A 
Sbjct: 398 LRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDAN 457

Query: 397 KAVELFRQMLVEVVE--PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV-VEVST 453
           KA+EL  +M  E  +  PN  T++  L A A LA L     IH Y +R    +V + VS 
Sbjct: 458 KALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSN 517

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            LID+Y+KCG +  A  +F  +   +K+ V W+ ++ GYGMHG+GE A+ +F+EM + G 
Sbjct: 518 CLIDMYAKCGDIGDARLVFDNM--MEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGF 575

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
           + + VT    L+ACSH G++D+G++ FN M  +       +HY C+VDLLGRAGRL+ A 
Sbjct: 576 KLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAAL 635

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633
            LI  MP++P   VW ALL  C IHG VELGE AAK + EL   N G+Y LLS +Y+   
Sbjct: 636 RLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAG 695

Query: 634 RWKDAENVRDVMDEKGLRKAPAHSLIE 660
           RWKD   +R +M  KG++K P  S +E
Sbjct: 696 RWKDVTRIRSLMRHKGIKKRPGCSWVE 722



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 157/532 (29%), Positives = 239/532 (44%), Gaps = 52/532 (9%)

Query: 115 PIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM-- 172
           P  I  C  ++  KL   +H ++L  G  +   + + LI+ Y++ G +  A  +      
Sbjct: 32  PPFIHKCKTISQVKL---IHQKLLSFGI-LTLNLTSHLISTYISLGCLSHAVSLLRRFPP 87

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
            +  V  WN+LI  Y  N  A + L  F  M      PD  +   V  ACG +  +  G 
Sbjct: 88  SDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGD 147

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
             H L        N+   NALV MY +CGS+++AR VFD M   DVV+W S+I  YA  G
Sbjct: 148 SSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLG 207

Query: 293 DVRNALGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
             + AL +F  M  E G RP+ +T+ ++L  C+S+     G+  H + +   +   + V 
Sbjct: 208 KPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVG 267

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF--------- 402
             L+DMYAK  ++  +  VF+    K  V WNA++AG    G    AV LF         
Sbjct: 268 NCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIK 327

Query: 403 --------------------------RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
                                     RQML   ++PN+ TL S+L   A +  L     I
Sbjct: 328 MDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEI 387

Query: 437 HCYLIRY-------GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           HCY I+Y       G      V   LID+Y+KC  ++ A  +F  +  K++D+V W+V+I
Sbjct: 388 HCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMI 447

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQ--PNEVTFTSALHACSHGGLLDEGLDLFNFMLENH 547
            GY  HG    A+ L  EM +   Q  PN  T + AL AC+    L  G  +  + L N 
Sbjct: 448 GGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQ 507

Query: 548 QTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           Q         C++D+  + G + +A  +   M ++     W +L+    +HG
Sbjct: 508 QNAVPLFVSNCLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLMTGYGMHG 558



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 14/172 (8%)

Query: 24  AATKSIAGTKQLHAFIITSG----PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSF 76
           A+  +++  KQ+HA+ + +     PLF  + + L+  Y   G + + R++FD M E++  
Sbjct: 488 ASLAALSIGKQIHAYALRNQQNAVPLF--VSNCLIDMYAKCGDIGDARLVFDNMMEKNEV 545

Query: 77  LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGR 136
            + ++M  Y  +G   ++L +F  M R+G +  D  T  +V+ AC+       G+    R
Sbjct: 546 TWTSLMTGYGMHGYGEEALGIFEEMRRIG-FKLDGVTLLVVLYACSHSGMIDQGMEYFNR 604

Query: 137 VLITGFDMDTFVGN--CLIAMYMNFGEVKAARKVFDAM-WEHSVVSWNTLIS 185
            + T F +     +  CL+ +    G + AA ++ + M  E   V W  L+S
Sbjct: 605 -MKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLS 655


>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
          Length = 641

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/597 (37%), Positives = 357/597 (59%), Gaps = 7/597 (1%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           M++RS + +NT++K  ++     + L  F  M R  E  PDN+T P+ +KAC +L     
Sbjct: 1   MTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFR-DEEKPDNFTLPVALKACGELREVNY 59

Query: 130 GIALHGRVLI-TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
           G  +HG V        D +VG+ LI MY+  G +  A ++FD + +  +V+W++++SG+ 
Sbjct: 60  GEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFE 119

Query: 189 KNAYAKEALVVFDWM-LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
           KN    +A+  F  M + S V PD  ++++++ AC  L    +GR +H  V       ++
Sbjct: 120 KNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDL 179

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
           +  N+L++ Y K  +  EA  +F  ++E+DV++W+++I  Y  NG    AL +F  M  +
Sbjct: 180 SLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDD 239

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           G  PN  T+  +L AC++ + L++GR  H   I++ LE EV V TAL+DMY KC   + +
Sbjct: 240 GTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEA 299

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV-VEPNDATLNSLLPAYAI 426
           + VF+R  +K  V W A+++G   NG+A +++E F  ML+E    P+   +  +L + + 
Sbjct: 300 YAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSE 359

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           L  L+QA   H Y+I+YGF S   +   L+++YS+CGSL +A K+F+ I +KD   VVW+
Sbjct: 360 LGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKD--TVVWT 417

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSG-VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
            +I GYG+HG G  A+  F  MV+S  V+PNEVTF S L ACSH GL+ EGL +F  M+ 
Sbjct: 418 SLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVN 477

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
           +++     +HY  +VDLLGR G LD A ++ + MP  PT  + G LLGAC IH N E+ E
Sbjct: 478 DYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAE 537

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
             AK LFELE  + G Y+L+S +Y     W++ E +R+ + ++G++K  A SLIE+R
Sbjct: 538 TVAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIR 594



 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 146/515 (28%), Positives = 267/515 (51%), Gaps = 16/515 (3%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLR--SSLVRAY---G 58
           P + TLP         ++     + +   + +H F+     L + L   SSL+  Y   G
Sbjct: 39  PDNFTLPVA-------LKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCG 91

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
            +     +FDE+ +     +++++  + +NG+ + +++ F  M+   +  PD  T   ++
Sbjct: 92  RMIEALRMFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLV 151

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
            ACT L+  +LG  +HG V+  GF  D  + N L+  Y      K A  +F  + E  V+
Sbjct: 152 SACTKLSNSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVI 211

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           SW+T+I+ Y +N  A EAL+VF+ M+  G EP+ A+V+ VL AC    ++E GR  HEL 
Sbjct: 212 SWSTVIACYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELA 271

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               L   +    ALVDMY+KC S  EA  VF R+  +DVV+W ++I+G+ LNG    ++
Sbjct: 272 IRKGLETEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSI 331

Query: 299 GLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
             F +M  E   RP+++ +  +L +CS L +L++ +  H++ IK   +    +  +L+++
Sbjct: 332 EEFSIMLLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVEL 391

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV-VEPNDAT 416
           Y++C  +  + +VF   + K TV W +++ G   +G   KA+E F  M+    V+PN+ T
Sbjct: 392 YSRCGSLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVT 451

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
             S+L A +    + + + I   ++  Y     +E    L+D+  + G L++A +I   +
Sbjct: 452 FLSILSACSHAGLIHEGLRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRM 511

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           P      ++   ++    +H +GE A ++ K++ +
Sbjct: 512 PFSPTPQIL-GTLLGACRIHQNGEMAETVAKKLFE 545


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/614 (37%), Positives = 367/614 (59%), Gaps = 6/614 (0%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           S+L++ Y   G++ + R +FDE+  R + L+N +++ Y ++G   +++  F  M R    
Sbjct: 151 SALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEM-RTSYS 209

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
             ++ TY  ++  C        G  LHG V+ +GF+ D  V N L+AMY   G +  ARK
Sbjct: 210 MVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARK 269

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F+ M +   V+WN LI+GY +N +  EA  +F+ M+ +GV+PD  +  S LP+      
Sbjct: 270 LFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGS 329

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +   + +H  +   R+  ++   +AL+D+Y K G V  AR +F +    DV   T+MI+G
Sbjct: 330 LRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISG 389

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y L+G   +A+  F+ +  EG+  NSLT+ S+L AC+++  LK G+ LH   +K+ LE  
Sbjct: 390 YVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKRLENI 449

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           V V +A+ DMYAKC  + L+++ F R S + +V WN++++    NG    A++LFRQM +
Sbjct: 450 VNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGM 509

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
              + +  +L+S L A A L  L     +H Y+IR  F S   V++ LID+YSKCG+L  
Sbjct: 510 SGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLAL 569

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A  +F+ +  K++  V W+ IIA YG HG     + L+ EM+++G+ P+ VTF   + AC
Sbjct: 570 AWCVFNLMDGKNE--VSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISAC 627

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
            H GL+DEG+  F+ M   +   +R +HY C+VDL GRAGR+ EA+D I++MP  P   V
Sbjct: 628 GHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAGV 687

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           WG LLGAC +HGNVEL ++A++ L EL+P+N G YVLLS +++    W     VR +M E
Sbjct: 688 WGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWASVLKVRSLMKE 747

Query: 648 KGLRKAPAHSLIEV 661
           KG++K P +S I+V
Sbjct: 748 KGVQKIPGYSWIDV 761



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 169/598 (28%), Positives = 296/598 (49%), Gaps = 13/598 (2%)

Query: 8   TLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY----GHVSNV 63
           TL   T  +  L +  +    +   +Q+H  +I  G       SS V       G   + 
Sbjct: 6   TLDSLTTQLESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDA 65

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
             LF E+  R +  +N +++     G    +L  +  ML     +PD YT+P VIKAC  
Sbjct: 66  GNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLG-SNVSPDKYTFPYVIKACGG 124

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
           L    L + +H      GF +D F G+ LI +Y + G ++ AR+VFD +     + WN +
Sbjct: 125 LNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVM 184

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243
           + GY K+     A+  F  M  S    +  +   +L  C        G  +H LV G   
Sbjct: 185 LRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGF 244

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
             +    N LV MY KCG++  AR +F+ M + D VTW  +I GY  NG    A  LF  
Sbjct: 245 EFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNA 304

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M   GV+P+S+T  S L +      L+  + +H++ ++  +  +V +++ALID+Y K   
Sbjct: 305 MISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGD 364

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           V+++ ++F +          A+++G V +GL   A+  FR ++ E +  N  T+ S+LPA
Sbjct: 365 VEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPA 424

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
            A +A L+    +HC++++    ++V V + + D+Y+KCG L+ A++ F    + D+D V
Sbjct: 425 CAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRR--MSDRDSV 482

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ +I+ +  +G  E A+ LF++M  SG + + V+ +SAL A ++   L  G ++  ++
Sbjct: 483 CWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYV 542

Query: 544 LENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           + N  +   +D +  + ++D+  + G L  A+ +   M  K     W +++ A   HG
Sbjct: 543 IRNAFS---SDTFVASTLIDMYSKCGNLALAWCVFNLMDGK-NEVSWNSIIAAYGNHG 596



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 88/201 (43%), Gaps = 16/201 (7%)

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           E ++     L SL  A +  + +QQA  +H  +I  G   V   S+ ++ +Y  CG    
Sbjct: 5   ETLDSLTTQLESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRD 64

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A  +F E+ ++    + W+ +I G  M G  + A+  + +M+ S V P++ TF   + AC
Sbjct: 65  AGNLFFELELRYA--LPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKAC 122

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHY------TCIVDLLGRAGRLDEAYDLIRTMPL 581
                   GL+     +  H T      +      + ++ L    G + +A  +   +PL
Sbjct: 123 G-------GLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARRVFDELPL 175

Query: 582 KPTHAVWGALLGACVIHGNVE 602
           + T  +W  +L   V  G+ +
Sbjct: 176 RDT-ILWNVMLRGYVKSGDFD 195


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/586 (38%), Positives = 354/586 (60%), Gaps = 5/586 (0%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N+++    QNG    +L +F GM R    + ++YT   V++ CT+LA   LG  LH  +
Sbjct: 234 WNSMISGCLQNGMFLQALDLFRGMQR-AVLSMNSYTTVGVLQVCTELAQLNLGRELHAAL 292

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           L +G +++    N L+ MY   G V +A +VF  + E   +SWN+++S Y +N    EA+
Sbjct: 293 LKSGSEVNIQC-NALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAI 351

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
                ML+ G +PD A +VS+  A G+L  +  G+ +H      RL  +    N L+DMY
Sbjct: 352 EFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMY 411

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
           +KC  +  +  VFDRM  +D ++WT++I  YA +     AL +F+  Q EG++ + + IG
Sbjct: 412 MKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIG 471

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           S+L ACS L  +   + LH + I+  L  +++V+  +ID+Y +C  V  S ++F    +K
Sbjct: 472 SILEACSGLETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETVEQK 530

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V W +++    ++GL  +A+ LF +M    V+P+   L S+L A   L+ L +   +H
Sbjct: 531 DIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVH 590

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            +LIR  F     + + L+D+YS CGSL  A K+F+   +K KD+V+W+ +I   GMHGH
Sbjct: 591 GFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFN--AVKCKDMVLWTAMINATGMHGH 648

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
           G+ A+ LFK M+Q+GV P+ V+F + L+ACSH  L++EG    + M+  ++     +HY 
Sbjct: 649 GKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYA 708

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617
           C+VDLLGR+G+ +EAY+ I++MPLKP   VW +LLGAC +H N EL  VAA  L ELEP+
Sbjct: 709 CVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPD 768

Query: 618 NPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           NPGNYVL+S +++ + +W +A+ VR  + E+GLRK PA S IE+ N
Sbjct: 769 NPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGN 814



 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 190/587 (32%), Positives = 300/587 (51%), Gaps = 17/587 (2%)

Query: 24  AATKSIAGTKQLHAFIITSGPLFTH---LRSSLVRAYG---HVSNVRILFDEMSERSSFL 77
           AA K++A   Q+HA  + +G L      L + L+  YG    V++ R+LFD MS R+ F 
Sbjct: 69  AAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFS 128

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYN---PDNYTYPIVIKACTDLAWRKLGIALH 134
           +N ++  Y  +G++ ++L ++  M RL   +   PD  T   V+KA       + G  +H
Sbjct: 129 WNALIGAYLSSGSACEALGVYRAM-RLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVH 187

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE-HSVVSWNTLISGYFKNAYA 193
           G  +  G D  TFV N LIAMY   G + +A +VF+ M +   V SWN++ISG  +N   
Sbjct: 188 GLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMF 247

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
            +AL +F  M ++ +  +  + V VL  C  L ++ +GR +H  +       NI   NAL
Sbjct: 248 LQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQC-NAL 306

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           + MY KCG V+ A  VF  + E+D ++W SM++ Y  NG    A+     M   G +P+ 
Sbjct: 307 LVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDH 366

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
             I SL SA   L +L  G+ +HA+ IKQ L+ +  V   L+DMY KC  ++ S  VF R
Sbjct: 367 ACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDR 426

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
              K  + W  I+     +    +A+E+FR+   E ++ +   + S+L A + L  +  A
Sbjct: 427 MRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLA 486

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             +HCY IR G L +V V   +IDIY +CG +  + K+F    ++ KDIV W+ +I  Y 
Sbjct: 487 KQLHCYAIRNGLLDLV-VKNRIIDIYGECGEVYHSLKMFE--TVEQKDIVTWTSMINCYA 543

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
             G    A+ LF EM  + VQP+ V   S L A      L +G ++  F++  +     A
Sbjct: 544 NSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEA 603

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
              + +VD+    G L  A  +   +  K    +W A++ A  +HG+
Sbjct: 604 I-VSSLVDMYSGCGSLSGALKVFNAVKCKDM-VLWTAMINATGMHGH 648



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 137/276 (49%), Gaps = 6/276 (2%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVR---ILFDEMS 71
           ++  +++  +  ++I   KQLH + I +G L   +++ ++  YG    V     +F+ + 
Sbjct: 469 MIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVE 528

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
           ++    + +++  YA +G  +++L +F  M +  +  PD+     ++ A   L+    G 
Sbjct: 529 QKDIVTWTSMINCYANSGLLNEALVLFAEM-QSTDVQPDSVALVSILGAIGGLSSLAKGK 587

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +HG ++   F M+  + + L+ MY   G +  A KVF+A+    +V W  +I+    + 
Sbjct: 588 EVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHG 647

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM-IHELVAGGRLGKNIAAW 250
           + K+A+ +F  ML++GV PD  S +++L AC + K +  G+  +  +++  RL      +
Sbjct: 648 HGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHY 707

Query: 251 NALVDMYVKCGSVNEARLVFDRMSER-DVVTWTSMI 285
             +VD+  + G   EA      M  +   V W S++
Sbjct: 708 ACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLL 743


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/662 (36%), Positives = 372/662 (56%), Gaps = 15/662 (2%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGP-----LFTHLRSSLVRAYGHVSNVRI 65
           K   L++KL++   +  SI    QLH+  +  G      + T L     R Y  + +   
Sbjct: 2   KRRDLLVKLLETCCSKISIP---QLHSQCLKVGLAHDSFVVTKLNVLYAR-YASLCHAHK 57

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR--LGEYNPDNYTYPIVIKACTD 123
           LF+E   ++ +L+N +++ Y   G   ++L +F  M    + E  PDNYT  I +K+C+ 
Sbjct: 58  LFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSG 117

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
           L   +LG  +HG +     D D FVG+ LI +Y   G++  A KVF    +  VV W ++
Sbjct: 118 LQKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSI 177

Query: 184 ISGYFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           I+GY +N   + AL  F  M+    V PD  ++VS   AC  L +  +GR +H  V    
Sbjct: 178 ITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRG 237

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
               +   N+++++Y K GS+  A  +F  M  +D+++W+SM+  YA NG   NAL LF 
Sbjct: 238 FDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFN 297

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            M  + +  N +T+ S L AC+S   L+ G+ +H   +    E ++ V TAL+DMY KC 
Sbjct: 298 EMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCF 357

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
             K +  +F R  KK  V W  + +G    G+A K++ +F  ML     P+   L  +L 
Sbjct: 358 SPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILA 417

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A + L  +QQA+ +H ++ + GF +   +   LI++Y+KC S+++A+K+F    ++ KD+
Sbjct: 418 ASSELGIVQQALCLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFK--GMRRKDV 475

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMV-QSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           V WS IIA YG HG GE A+ LF +M   S V+PN+VTF S L ACSH GL++EG+ +F+
Sbjct: 476 VTWSSIIAAYGFHGQGEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFH 535

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            M+  +Q     +HY  +VDLLGR G LD+A D+I  MP++    VWGALLGAC IH N+
Sbjct: 536 VMVNEYQLMPNTEHYGIMVDLLGRMGELDKALDMINEMPMQAGPHVWGALLGACRIHQNI 595

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           ++GE+AA  LF L+P + G Y LLS +Y   + W DA  +R ++ E   +K    S++E+
Sbjct: 596 KIGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRFKKIVGQSMVEI 655

Query: 662 RN 663
           +N
Sbjct: 656 KN 657


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/607 (36%), Positives = 355/607 (58%), Gaps = 5/607 (0%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +  +   R +F+EM  R    +N+++  Y  NG  +++L+++     LG   PD+YT   
Sbjct: 163 FNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVV-PDSYTMSS 221

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           V++AC  L   + G  +HG +   G   D  V N L++MY  F  +   R++FD M    
Sbjct: 222 VLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRD 281

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
            VSWNT+I GY +    +E++ +F  M+    +PD  ++ S+L ACG+L ++E G+ +H+
Sbjct: 282 AVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHD 340

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            +       +  A N L++MY KCG++  ++ VF  M  +D V+W SMIN Y  NG    
Sbjct: 341 YMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDE 400

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A+ LF++M+ + V+P+S+T   LLS  + L  L  G+ LH    K      ++V   L+D
Sbjct: 401 AMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVD 459

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MYAKC  +  S +VF     +  + WN I+A CVH+      + +  +M  E V P+ AT
Sbjct: 460 MYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMAT 519

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           + S+LP  ++LA  +Q   IH  + + G  S V V   LI++YSKCGSL ++ ++F    
Sbjct: 520 MLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFK--L 577

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           +K KD+V W+ +I+  GM+G G+ AV  F EM  +G+ P+ V F + + ACSH GL++EG
Sbjct: 578 MKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEG 637

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
           L+ F+ M ++++   R +HY C+VDLL R+  LD+A D I +MPLKP  ++WGALL AC 
Sbjct: 638 LNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACR 697

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           + G+ E+ E  ++ + EL P++ G YVL+S +Y+A+ +W    ++R  +  +GL+K P  
Sbjct: 698 MSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGC 757

Query: 657 SLIEVRN 663
           S +E++N
Sbjct: 758 SWMEIQN 764



 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 200/605 (33%), Positives = 309/605 (51%), Gaps = 30/605 (4%)

Query: 25  ATKSIAGTKQLH---AFIITSGPLFTHLRSS-LVRAYGH----VSNVRILFDEMSERSSF 76
           A  S A T QLH   + IIT G   + + S+ L+  Y H     S+  +        + +
Sbjct: 22  ALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVY 81

Query: 77  LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGR 136
           L+N++++    NG   ++L ++    R+    PD YT+P VI AC  L   ++  ++H R
Sbjct: 82  LWNSIIRALTHNGLFSEALSLYSETQRI-RLQPDTYTFPSVINACAGLLDFEMAKSIHDR 140

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEA 196
           VL  GF  D ++GN LI MY  F ++  ARKVF+ M    VVSWN+LISGY  N Y  EA
Sbjct: 141 VLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEA 200

Query: 197 LVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
           L ++      GV PD  ++ SVL ACG L  +E G +IH L+    + K++   N L+ M
Sbjct: 201 LEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSM 260

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM--QFEGVRPNSL 314
           Y K   + + R +FD+M  RD V+W +MI GY+  G    ++ LF  M  QF   +P+ L
Sbjct: 261 YCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQF---KPDLL 317

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           TI S+L AC  L  L+ G+ +H + I    EC+      LI+MYAKC  +  S +VF+  
Sbjct: 318 TITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 377

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
             K +V WN+++   + NG   +A++LF+ M  + V+P+  T   LL     L DL    
Sbjct: 378 KCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLHLGK 436

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            +HC L + GF S + VS  L+D+Y+KCG +  + K+F    +K +DI+ W+ IIA    
Sbjct: 437 ELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFEN--MKARDIITWNTIIASCVH 494

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD----LFNFMLENHQTC 550
                  + +   M   GV P+  T  S L  CS      +G +    +F   LE+    
Sbjct: 495 SEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPV 554

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
                   ++++  + G L  ++ + + M  K     W AL+ AC ++G    G+ A + 
Sbjct: 555 GNV-----LIEMYSKCGSLRNSFQVFKLMKTKDV-VTWTALISACGMYGE---GKKAVRA 605

Query: 611 LFELE 615
             E+E
Sbjct: 606 FGEME 610


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/683 (35%), Positives = 368/683 (53%), Gaps = 43/683 (6%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERS 74
           +++  A  +     K +H  +   G  +  +L +SL+  Y   G V++V  +F  M+ R 
Sbjct: 84  IIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRD 143

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
              +++++  YA N     +   F  M +     P+  T+  ++KAC + +  +    +H
Sbjct: 144 VVTWSSMIAAYAGNNHPAKAFDTFERM-KDANIEPNRITFLSILKACNNYSMLEKAREIH 202

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
             V  +G + D  V   LI MY   GE+  A ++F  M E +VVSW  +I    ++    
Sbjct: 203 TVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLN 262

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           EA  +++ ML++G+ P+  + VS+L +C   + +  GR IH  ++   L  ++   NAL+
Sbjct: 263 EAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALI 322

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG--DVRNALGLFQL---MQFEGV 309
            MY KC  + +AR  FDRMS+RDV++W++MI GYA +G  D  +   +FQL   M+ EGV
Sbjct: 323 TMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGV 382

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
            PN +T  S+L ACS    L++GR +HA   K   E +  ++TA+ +MYAKC  +  + Q
Sbjct: 383 FPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQ 442

Query: 370 VFART-------------------------------SKKKTVPWNAILAGCVHNGLARKA 398
           VF++                                S +  V WN ++AG   +G   K 
Sbjct: 443 VFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKV 502

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
            EL   M VE  +P+  T+ S+L A   L+ L++   +H   ++ G  S   V+T LI +
Sbjct: 503 FELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGM 562

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           YSKCG +  A  +F +I   ++D V W+ ++AGYG HG G  AV LFK M++  V PNE+
Sbjct: 563 YSKCGEVTEARTVFDKIS--NRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEI 620

Query: 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578
           TFT+ + AC   GL+ EG ++F  M E+ +      HY C+VDLLGRAGRL EA + I+ 
Sbjct: 621 TFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQR 680

Query: 579 MPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDA 638
           MP +P  +VW ALLGAC  H NV+L E AA  +  LEP N   YV LS +Y+   RW D+
Sbjct: 681 MPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDS 740

Query: 639 ENVRDVMDEKGLRKAPAHSLIEV 661
             VR VMD+KGL+K    S IE+
Sbjct: 741 TKVRKVMDDKGLKKDRGESSIEI 763



 Score =  268 bits (685), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 169/577 (29%), Positives = 286/577 (49%), Gaps = 50/577 (8%)

Query: 98  FLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYM 157
            LG+++      ++ TY  +I+ C  L   + G  +H ++   G  +D ++GN LI  Y 
Sbjct: 65  LLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYS 124

Query: 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVS 217
            FG+V +  +VF  M    VV+W+++I+ Y  N +  +A   F+ M  + +EP+  + +S
Sbjct: 125 KFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLS 184

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           +L AC     +E  R IH +V    +  ++A   AL+ MY KCG ++ A  +F +M ER+
Sbjct: 185 ILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERN 244

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
           VV+WT++I   A +  +  A  L++ M   G+ PN++T  SLL++C++   L RGR +H+
Sbjct: 245 VVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHS 304

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
              ++ LE +V+V  ALI MY KCN ++ + + F R SK+  + W+A++AG   +G   K
Sbjct: 305 HISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDK 364

Query: 398 -----AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
                  +L  +M  E V PN  T  S+L A ++   L+Q   IH  + + GF S   + 
Sbjct: 365 ESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQ 424

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKD-----------------------------KDIV 483
           T + ++Y+KCGS+  A ++FS++  K+                             +++V
Sbjct: 425 TAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVV 484

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG----LDL 539
            W+++IAGY   G       L   M   G QP+ VT  S L AC     L+ G     + 
Sbjct: 485 SWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEA 544

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
               LE+    +     T ++ +  + G + EA  +   +  + T A W A+L     HG
Sbjct: 545 VKLGLESDTVVA-----TSLIGMYSKCGEVTEARTVFDKISNRDTVA-WNAMLAGYGQHG 598

Query: 600 NVELGEVAAKWLFE--LEPENPGNYVLLSKLYSAVRR 634
              +G  A   LF+  L+   P N +  + + SA  R
Sbjct: 599 ---IGPEAVD-LFKRMLKERVPPNEITFTAVISACGR 631



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 127/417 (30%), Positives = 208/417 (49%), Gaps = 9/417 (2%)

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
           KEA+ +   + + G+  +  +   ++  C  L+  E G+M+H+ +    L  +I   N+L
Sbjct: 60  KEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSL 119

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           ++ Y K G V     VF RM+ RDVVTW+SMI  YA N     A   F+ M+   + PN 
Sbjct: 120 INFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNR 179

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
           +T  S+L AC++   L++ R +H       +E +V V TALI MY+KC  + L+ ++F +
Sbjct: 180 ITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQK 239

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
             ++  V W AI+     +    +A EL+ +ML   + PN  T  SLL +      L + 
Sbjct: 240 MKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRG 299

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             IH ++   G  + V V+  LI +Y KC  ++ A + F  +    +D++ WS +IAGY 
Sbjct: 300 RRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMS--KRDVISWSAMIAGYA 357

Query: 494 MHGHGET-----AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
             G+ +         L + M + GV PN+VTF S L ACS  G L++G  +   + +   
Sbjct: 358 QSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGF 417

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
              R+   T I ++  + G + EA  +   M  K   A W +LL   +  G++   E
Sbjct: 418 ESDRSLQ-TAIFNMYAKCGSIYEAEQVFSKMENKNVVA-WASLLTMYIKCGDLTSAE 472



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 172/351 (49%), Gaps = 40/351 (11%)

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G ++ A+ L  +++  G+  NS T G ++  C+ L   + G+ +H    +  L  ++ + 
Sbjct: 57  GRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLG 116

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
            +LI+ Y+K   V    QVF R + +  V W++++A    N    KA + F +M    +E
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIE 176

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           PN  T  S+L A    + L++A  IH  +   G  + V V+T LI +YSKCG +  A +I
Sbjct: 177 PNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEI 236

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS--- 528
           F +  +K++++V W+ II     H     A  L+++M+Q+G+ PN VTF S L++C+   
Sbjct: 237 FQK--MKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPE 294

Query: 529 --------HGGLLDEGLD----LFNFMLENHQTC-------------SRAD--HYTCIVD 561
                   H  + + GL+    + N ++  +  C             S+ D   ++ ++ 
Sbjct: 295 ALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIA 354

Query: 562 LLGRAG-----RLDEAYDLIRTMPLK---PTHAVWGALLGACVIHGNVELG 604
              ++G      LDE + L+  M  +   P    + ++L AC +HG +E G
Sbjct: 355 GYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQG 405


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/636 (35%), Positives = 365/636 (57%), Gaps = 10/636 (1%)

Query: 34  QLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---RILFDE--MSERSSFLYNTVMKMYAQ 87
           ++H   +  G   F  + ++L+  YG   ++   R+LFD   M +  +  +N+++  +  
Sbjct: 166 EIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVA 225

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
            G   ++L +F  M  +G    + YT+   ++   D ++ KLG+ +HG VL +    D +
Sbjct: 226 EGNCLEALSLFRRMQEVG-VASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVY 284

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           V N LIAMY   G ++ A +VF++M     VSWNTL+SG  +N    +AL  F  M  SG
Sbjct: 285 VANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSG 344

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
            +PD  SV++++ A G    +  G+ +H       L  N+   N LVDMY KC  V    
Sbjct: 345 QKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMG 404

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
             F+ M E+D+++WT++I GYA N     A+ LF+ +Q +G+  + + IGS+L ACS L 
Sbjct: 405 HAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLK 464

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
                R +H +  K++L  +++++ A++++Y +   +  + + F     K  V W +++ 
Sbjct: 465 SRNFIREIHGYVFKRDLA-DIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMIT 523

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
            CVHNGL  +A+ELF  +    ++P+   + S L A A L+ L++   IH +LIR GF  
Sbjct: 524 CCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFL 583

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
              +++ L+D+Y+ CG++E++ K+F  +  K +D+++W+ +I   GMHG G  A++LFK+
Sbjct: 584 EGPIASSLVDMYACCGTVENSRKMFHSV--KQRDLILWTSMINANGMHGCGNKAIALFKK 641

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M    V P+ +TF + L+ACSH GL+ EG   F  M   +Q     +HY C+VDLL R+ 
Sbjct: 642 MTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSN 701

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
            L+EAY  +R MP+KP+  +W ALLGAC IH N ELGE+AAK L + + EN G Y L+S 
Sbjct: 702 SLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISN 761

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +++A  RW D E VR  M   GL+K P  S IEV N
Sbjct: 762 IFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDN 797



 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 190/655 (29%), Positives = 321/655 (49%), Gaps = 47/655 (7%)

Query: 25  ATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVR---ILFDEMSERSSFLYNTV 81
           A K++   +QLHA ++ S  L   L + LV  YG   ++R    +FDEMSER+ F +N +
Sbjct: 58  AAKALPQGQQLHALLLKS-HLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNAL 116

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           M  +  +G   ++++++  M  LG    D  T+P V+KAC  L   +LG  +HG  +  G
Sbjct: 117 MGAFVSSGKYLEAIELYKDMRVLG-VAIDACTFPSVLKACGALGESRLGAEIHGVAVKCG 175

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDA--MWEHSVVSWNTLISGYFKNAYAKEALVV 199
           +    FV N LIAMY   G++  AR +FD   M +   VSWN++IS +       EAL +
Sbjct: 176 YGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSL 235

Query: 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVK 259
           F  M + GV  +  + V+ L        +++G  IH  V       ++   NAL+ MY K
Sbjct: 236 FRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAK 295

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
           CG + +A  VF+ M  RD V+W ++++G   N    +AL  F+ MQ  G +P+ +++ +L
Sbjct: 296 CGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNL 355

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           ++A      L +G+ +HA+ I+  L+  + +   L+DMYAKC  VK     F    +K  
Sbjct: 356 IAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDL 415

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           + W  I+AG   N    +A+ LFR++ V+ ++ +   + S+L A + L        IH Y
Sbjct: 416 ISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGY 475

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           + +   L+ + +   ++++Y + G ++ A + F    I+ KDIV W+ +I     +G   
Sbjct: 476 VFKRD-LADIMLQNAIVNVYGEVGHIDYARRAFES--IRSKDIVSWTSMITCCVHNGLPV 532

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM------LENHQTCSRA 553
            A+ LF  + Q+ +QP+ +   SAL A ++   L +G ++  F+      LE     S  
Sbjct: 533 EALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLV 592

Query: 554 DHYTC------------------------IVDLLGRAGRLDEAYDLIRTMPLK---PTHA 586
           D Y C                        +++  G  G  ++A  L + M  +   P H 
Sbjct: 593 DMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHI 652

Query: 587 VWGALLGACVIHGNVELGE---VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDA 638
            + ALL AC   G +  G+      K+ ++LEP  P +Y  +  L S     ++A
Sbjct: 653 TFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPW-PEHYACMVDLLSRSNSLEEA 706



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 164/566 (28%), Positives = 273/566 (48%), Gaps = 34/566 (6%)

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
           + + +++  C        G  LH  +L +   +  F+   L+ MY   G ++ A KVFD 
Sbjct: 47  HAHSLLLDLCVAAKALPQGQQLHALLLKS--HLSAFLATKLVLMYGKCGSLRDAVKVFDE 104

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M E ++ SWN L+  +  +    EA+ ++  M   GV  D  +  SVL ACG L E  +G
Sbjct: 105 MSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLG 164

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFD--RMSERDVVTWTSMINGYA 289
             IH +      G+ +   NAL+ MY KCG +  AR++FD   M + D V+W S+I+ + 
Sbjct: 165 AEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHV 224

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
             G+   AL LF+ MQ  GV  N+ T  + L       ++K G  +H   +K N   +V 
Sbjct: 225 AEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVY 284

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           V  ALI MYAKC  ++ + +VF     +  V WN +L+G V N L   A+  FR M    
Sbjct: 285 VANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSG 344

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
            +P+  ++ +L+ A     +L +   +H Y IR G  S +++   L+D+Y+KC  ++   
Sbjct: 345 QKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMG 404

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
             F    + +KD++ W+ IIAGY  +     A++LF+++   G+  + +   S L ACS 
Sbjct: 405 HAFE--CMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS- 461

Query: 530 GGLLDEGLDLFNFMLENHQTCSRAD-----HYTCIVDLLGRAGRLD---EAYDLIRTMPL 581
                 GL   NF+ E H    + D         IV++ G  G +D    A++ IR+  +
Sbjct: 462 ------GLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDI 515

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLLSKLYSA--VRRWKD 637
                 W +++  CV +G   L   A +  + L+  N  P +  ++S L +   +   K 
Sbjct: 516 ----VSWTSMITCCVHNG---LPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKK 568

Query: 638 AENVRDVMDEKG--LRKAPAHSLIEV 661
            + +   +  KG  L    A SL+++
Sbjct: 569 GKEIHGFLIRKGFFLEGPIASSLVDM 594


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/614 (38%), Positives = 370/614 (60%), Gaps = 6/614 (0%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           S+L++ Y   G++ + R +FDE+ +R + L+N ++  Y ++G  ++++  F GM R    
Sbjct: 184 SALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGM-RTSYS 242

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
             ++ TY  ++  C       LG  +HG V+ +GF+ D  V N L+AMY   G +  ARK
Sbjct: 243 MVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARK 302

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F+ M +   V+WN LI+GY +N +  EA  +F+ M+ +GV+PD  +  S LP+      
Sbjct: 303 LFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGS 362

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +   + +H  +   R+  ++   +AL+D+Y K G V  AR +F + +  DV   T+MI+G
Sbjct: 363 LRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISG 422

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y L+G   +A+  F+ +  EG+ PNSLT+ S+L AC++L  LK G+ LH   +K+ LE  
Sbjct: 423 YVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQLENI 482

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           V V +A+ DMYAKC  + L+++ F R S+  ++ WN++++    NG    AV+LFRQM +
Sbjct: 483 VNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLFRQMGM 542

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
              + +  +L+S L + A L  L     +H Y+IR  F S   V++ LID+YSKCG L  
Sbjct: 543 SGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAFSSDTFVASALIDMYSKCGKLAL 602

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A  +F+ +  K++  V W+ IIA YG HG     + LF EM+++GV P+ VTF   + AC
Sbjct: 603 ARCVFNLMAGKNE--VSWNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVTFLVIISAC 660

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
            H GL+ EG+  F+ M   +   +R +HY C+VDL GRAGRL EA+D I++MP  P   V
Sbjct: 661 GHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRLHEAFDAIKSMPFTPDAGV 720

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           WG LLGAC +HGNVEL ++A++ L EL+P+N G YVLLS +++    W     VR +M E
Sbjct: 721 WGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWGSVLKVRRLMKE 780

Query: 648 KGLRKAPAHSLIEV 661
           KG++K P +S I+V
Sbjct: 781 KGVQKIPGYSWIDV 794



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 166/573 (28%), Positives = 295/573 (51%), Gaps = 13/573 (2%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+H  II  G      L S ++  Y   G +S+   LF  +   ++  +N +++     
Sbjct: 64  RQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFFGLELCNALPWNWMIRGLYML 123

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G    +L  +  ML     +PD YT+P VIKAC  L    L + +H      GF +D FV
Sbjct: 124 GWFDFALLFYFKMLG-SNVSPDKYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHVDLFV 182

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           G+ LI +Y + G +  AR+VFD + +   + WN ++ GY K+     A+  F  M  S  
Sbjct: 183 GSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYS 242

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
             +  +   +L  C    +  +G  +H LV G     +    N LV MY KCG++ +AR 
Sbjct: 243 MVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGNLFDARK 302

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +F+ M + D VTW  +I GY  NG    A  LF  M   GV+P+S+T  S L +      
Sbjct: 303 LFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGS 362

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L+  + +H++ ++  +  +V +++ALID+Y K   V+++ ++F + +        A+++G
Sbjct: 363 LRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISG 422

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            V +GL   A+  FR ++ E + PN  T+ S+LPA A LA L+    +HC +++    ++
Sbjct: 423 YVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDILKKQLENI 482

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           V V + + D+Y+KCG L+ A++ F    + + D + W+ +I+ +  +G  E AV LF++M
Sbjct: 483 VNVGSAITDMYAKCGRLDLAYEFFRR--MSETDSICWNSMISSFSQNGKPEMAVDLFRQM 540

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRA 566
             SG + + V+ +SAL + ++   L  G ++  +++ N  +   +D +  + ++D+  + 
Sbjct: 541 GMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAFS---SDTFVASALIDMYSKC 597

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           G+L  A  +   M  K     W +++ A   HG
Sbjct: 598 GKLALARCVFNLMAGK-NEVSWNSIIAAYGNHG 629



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 139/491 (28%), Positives = 240/491 (48%), Gaps = 12/491 (2%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           + +AC+D +  +    +H ++++ G      + + ++ +Y+  G +     +F  +   +
Sbjct: 50  LFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFFGLELCN 109

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
            + WN +I G +   +   AL+ +  ML S V PD  +   V+ ACG L  + +  ++H 
Sbjct: 110 ALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVHN 169

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
                    ++   +AL+ +Y   G + +AR VFD + +RD + W  M++GY  +GD  N
Sbjct: 170 TARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNN 229

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A+G F  M+      NS+T   +LS C++      G  +H   I    E +  V   L+ 
Sbjct: 230 AMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVA 289

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY+KC  +  + ++F    +  TV WN ++AG V NG   +A  LF  M+   V+P+  T
Sbjct: 290 MYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVT 349

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
             S LP+      L+    +H Y++R+     V + + LIDIY K G +E A KIF +  
Sbjct: 350 FASFLPSILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQQNT 409

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           +   D+ V + +I+GY +HG    A++ F+ ++Q G+ PN +T  S L AC+    L  G
Sbjct: 410 L--VDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLG 467

Query: 537 ----LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
                D+    LEN      A     I D+  + GRLD AY+  R M  +     W +++
Sbjct: 468 KELHCDILKKQLENIVNVGSA-----ITDMYAKCGRLDLAYEFFRRMS-ETDSICWNSMI 521

Query: 593 GACVIHGNVEL 603
            +   +G  E+
Sbjct: 522 SSFSQNGKPEM 532



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 174/383 (45%), Gaps = 4/383 (1%)

Query: 217 SVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER 276
           S+  AC     ++  R +H  +  G +    A  + ++ +YV CG +++   +F  +   
Sbjct: 49  SLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFFGLELC 108

Query: 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
           + + W  MI G  + G    AL  +  M    V P+  T   ++ AC  L  +     +H
Sbjct: 109 NALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLCMVVH 168

Query: 337 AWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR 396
                     ++ V +ALI +YA    +  + +VF    ++ T+ WN +L G V +G   
Sbjct: 169 NTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFN 228

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLI 456
            A+  F  M       N  T   +L   A          +H  +I  GF    +V+  L+
Sbjct: 229 NAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLV 288

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
            +YSKCG+L  A K+F+ +P    D V W+ +IAGY  +G  + A  LF  M+ +GV+P+
Sbjct: 289 AMYSKCGNLFDARKLFNTMP--QTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPD 346

Query: 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
            VTF S L +    G L    ++ ++++  H+        + ++D+  + G ++ A  + 
Sbjct: 347 SVTFASFLPSILESGSLRHCKEVHSYIVR-HRVPFDVYLKSALIDIYFKGGDVEMARKIF 405

Query: 577 RTMPLKPTHAVWGALLGACVIHG 599
           +   L    AV  A++   V+HG
Sbjct: 406 QQNTLVDV-AVCTAMISGYVLHG 427



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 21/195 (10%)

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           L SL  A +  + +QQA  +H  +I  G   V  +S+ ++ +Y  CG +     +F  + 
Sbjct: 47  LESLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFFGLE 106

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           + +   + W+ +I G  M G  + A+  + +M+ S V P++ TF   + AC        G
Sbjct: 107 LCNA--LPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACG-------G 157

Query: 537 LDLFNFMLENHQTCSRADHY------TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           L+     +  H T      +      + ++ L    G + +A  +   +P + T  +W  
Sbjct: 158 LNNVPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDT-ILWNV 216

Query: 591 LLGACVIHGNVELGE 605
           +L     HG V+ G+
Sbjct: 217 ML-----HGYVKSGD 226


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/637 (37%), Positives = 373/637 (58%), Gaps = 10/637 (1%)

Query: 34  QLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSE-RSSFLYNTVMKMYAQN 88
           ++H   + SG    T + ++LV  Y   G + +   +F+ M + R    +N+ +    QN
Sbjct: 184 EVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQN 243

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   ++L +F  M   G ++ ++YT   V++ C +LA    G  LH  +L  G + +   
Sbjct: 244 GMFLEALDLFRRMQSDG-FSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQC 302

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+ MY   G V +A +VF  + +   +SWN+++S Y +N    EA+  F  M+++G 
Sbjct: 303 -NALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGF 361

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            PD A +VS+L A G+L  +  GR +H      RL  ++   N L+DMY+KC SV  +  
Sbjct: 362 NPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSAR 421

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VFDRM  +D V+WT++I  YA +     A+G F+  Q EG++ + + +GS+L ACS L  
Sbjct: 422 VFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKS 481

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           +   + +H++ I+  L  ++I++  +ID+Y +C  V  +  +F    KK  V W +++  
Sbjct: 482 ISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNC 540

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
              NGL  +AV LF +ML   ++P+   L  +L A A L+ L +   IH +LIR  F   
Sbjct: 541 FAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVE 600

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             V + L+D+YS CGS+  A K+F E   K KD+V+W+ +I   GMHGHG+ A+ +FK M
Sbjct: 601 GAVVSSLVDMYSGCGSMNYALKVFDEA--KCKDVVLWTAMINATGMHGHGKQAIYIFKRM 658

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
           +++GV P+ V+F + L+ACSH  L+DEG    + M+  ++     +HY C+VDLLGR+G+
Sbjct: 659 LETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQ 718

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
            +EAY  I++MPL+P   VW ALLGAC IH N EL  +A   L ELEP+NPGNYVL+S +
Sbjct: 719 TEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNV 778

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           ++ + +W + + +R  M E+GLRK PA S IE+ N +
Sbjct: 779 FAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTV 815



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 144/455 (31%), Positives = 217/455 (47%), Gaps = 11/455 (2%)

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           ++   ++G   ++L+        G   P    Y  V+           G  LH   + TG
Sbjct: 26  LRQLCKDGDLREALRQLAARSARGRAPPPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATG 85

Query: 142 F---DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
               D   F+   L+ MY   G +  A ++FD M   +V SWN LI     +  A EA+ 
Sbjct: 86  ALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVG 145

Query: 199 VFDWMLKS----GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           V+  M  S    G  PD  ++ SVL ACG   +   G  +H L     L ++    NALV
Sbjct: 146 VYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALV 205

Query: 255 DMYVKCGSVNEARLVFDRMSE-RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
            MY KCG ++ A  VF+ M + RDV +W S I+G   NG    AL LF+ MQ +G   NS
Sbjct: 206 GMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNS 265

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            T   +L  C+ L  L  GR LHA  +K   E  +    AL+ MYA+C  V  + +VF  
Sbjct: 266 YTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQC-NALLVMYARCGWVDSALRVFRE 324

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
              K  + WN++L+  V N L  +A++ F +M+     P+ A + SLL A   L  L   
Sbjct: 325 IGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLING 384

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             +H Y ++    S ++++  L+D+Y KC S+E + ++F  + IKD   V W+ IIA Y 
Sbjct: 385 REVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDH--VSWTTIIACYA 442

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
                  A+  F+   + G++ + +   S L ACS
Sbjct: 443 QSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACS 477



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 137/272 (50%), Gaps = 6/272 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRI---LFDEMSERSS 75
           +++  +  KSI+  KQ+H++ I +G L   L++ ++  YG    V     +F+ + ++  
Sbjct: 472 ILEACSGLKSISLLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKDI 531

Query: 76  FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHG 135
             + +++  +A+NG  H+++ +F  ML  G   PD+     ++ A   L+    G  +HG
Sbjct: 532 VTWTSMVNCFAENGLLHEAVALFGKMLNAG-IQPDSVALVGILGAIAGLSSLTKGKEIHG 590

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
            ++   F ++  V + L+ MY   G +  A KVFD      VV W  +I+    + + K+
Sbjct: 591 FLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQ 650

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM-IHELVAGGRLGKNIAAWNALV 254
           A+ +F  ML++GV PD  S +++L AC + K ++ G+  +  +V+  +L      +  +V
Sbjct: 651 AIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVV 710

Query: 255 DMYVKCGSVNEARLVFDRMS-ERDVVTWTSMI 285
           D+  + G   EA      M  E   V W +++
Sbjct: 711 DLLGRSGQTEEAYKFIKSMPLEPKSVVWCALL 742


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/612 (37%), Positives = 361/612 (58%), Gaps = 9/612 (1%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           SL  ++G+  + R++FD++ E   +L+  +++ Y  N  S + +K +  +++ G +  D+
Sbjct: 96  SLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLNNESFEVIKFYDLLMKHG-FGYDD 154

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVL-ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD 170
             +   +KACT++     G  +H +++ +  FD     G  L+ MY   GE+K++ KVF+
Sbjct: 155 IVFSKALKACTEVQDLDNGKKIHCQIVKVPSFDNVVLTG--LLDMYAKCGEIKSSYKVFE 212

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
            +   +VV W ++I+GY KN   +E LV+F+ M ++ V  +  +  +++ AC  L+ +  
Sbjct: 213 DITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQ 272

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
           G+  H  +    +  +     +L+DMYVKCG ++ AR VF+  S  D+V WT+MI GY  
Sbjct: 273 GKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTH 332

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           NG V  AL LFQ M   G++PN +TI S+LS C  +  L+ GRS+H  +IK  +  +  V
Sbjct: 333 NGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGI-WDTNV 391

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
             AL+ MYAKC   + +  VF   S+K  V WN+I++G   NG   +A+ LF +M  E V
Sbjct: 392 ANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESV 451

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL--SVVEVSTGLIDIYSKCGSLESA 468
            PN  T+ SL  A A L  L    ++H Y ++ GFL  S V V T L+D Y+KCG  ESA
Sbjct: 452 MPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESA 511

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
             IF    I++K+ + WS +I GYG  G  + ++ LF+EM++   +PNE TFTS L ACS
Sbjct: 512 RLIFD--TIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACS 569

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           H G+++EG   F+ M +++       HYTC+VD+L RAG L++A D+I  MP++P    +
Sbjct: 570 HTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCF 629

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
           GA L  C +H   +LGE+  K + +L P++   YVL+S LY++  RW  A+ VR++M ++
Sbjct: 630 GAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWSQAKEVRNLMKQR 689

Query: 649 GLRKAPAHSLIE 660
           GL K   HS++E
Sbjct: 690 GLSKIAGHSIME 701



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 147/488 (30%), Positives = 238/488 (48%), Gaps = 9/488 (1%)

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           +++  CT++   +     HG +   G   D  +   L+++Y +FG  K AR VFD + E 
Sbjct: 61  LLLSKCTNIDSLRQA---HGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEP 117

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
               W  ++  Y  N  + E +  +D ++K G   D       L AC  +++++ G+ IH
Sbjct: 118 DFYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIH 177

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
             +       N+     L+DMY KCG +  +  VF+ ++ R+VV WTSMI GY  N    
Sbjct: 178 CQIVKVPSFDNV-VLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYE 236

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
             L LF  M+   V  N  T G+L+ AC+ L  L +G+  H   IK  +E    + T+L+
Sbjct: 237 EGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLL 296

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           DMY KC  +  + +VF   S    V W A++ G  HNG   +A+ LF++M    ++PN  
Sbjct: 297 DMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCV 356

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           T+ S+L    ++ +L+   +IH   I+ G      V+  L+ +Y+KC     A  +F E+
Sbjct: 357 TIASVLSGCGLVGNLELGRSIHGLSIKVGIWD-TNVANALVHMYAKCYQNRDAKYVF-EM 414

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
              +KDIV W+ II+G+  +G    A+ LF  M    V PN VT  S   AC+  G L  
Sbjct: 415 E-SEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAI 473

Query: 536 GLDLFNFMLENHQTCSRADHY-TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           G  L  + ++     S + H  T ++D   + G  + A  +  T+  K T   W A++G 
Sbjct: 474 GSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFDTIEEKNT-ITWSAMIGG 532

Query: 595 CVIHGNVE 602
               G+ +
Sbjct: 533 YGKQGDTK 540


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/665 (35%), Positives = 368/665 (55%), Gaps = 10/665 (1%)

Query: 5   SHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHV 60
           S+H   +T    +KL Q+    +     KQ+   II SG  L  +  ++L++ +   G++
Sbjct: 56  SNHIDSRT---YVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNM 112

Query: 61  SNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKA 120
              R  FD +  ++   +N ++  YAQ G   ++  +F  M+      P   T+ IV+ A
Sbjct: 113 LEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEA-MEPSIITFLIVLDA 171

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
           C+  A  KLG   H +V+  GF  D  +G  L++MY+  G +  AR+VFD +++  V ++
Sbjct: 172 CSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTF 231

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
           N +I GY K+   ++A  +F  M + G +P+  S +S+L  C   + +  G+ +H     
Sbjct: 232 NVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMN 291

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
             L  ++    AL+ MY+ CGS+  AR VFD+M  RDVV+WT MI GYA N ++ +A GL
Sbjct: 292 TGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGL 351

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
           F  MQ EG++P+ +T   +++AC+S   L   R +H+  ++     +++V+TAL+ MYAK
Sbjct: 352 FATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAK 411

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           C  +K + QVF   S++  V W+A++   V NG   +A E F  M    VEP+  T  +L
Sbjct: 412 CGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINL 471

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L A   L  L   M I+   I+   +S + V   LI++  K GS+E A  IF  +    +
Sbjct: 472 LNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMV--QR 529

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
           D+V W+V+I GY +HG+   A+ LF  M++   +PN VTF   L ACS  G ++EG   F
Sbjct: 530 DVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFF 589

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           +++L+        + Y C+VDLLGRAG LDEA  LI  MPLKP  ++W  LL AC I+GN
Sbjct: 590 SYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGN 649

Query: 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           +++ E AA+     EP +   YV LS +Y+A   W++   VR VM+ +G+RK    + IE
Sbjct: 650 LDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIE 709

Query: 661 VRNIL 665
           V   L
Sbjct: 710 VEGKL 714



 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 159/500 (31%), Positives = 263/500 (52%), Gaps = 6/500 (1%)

Query: 103 RLGEYNP--DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG 160
           RLGE +   D+ TY  + + C  L    LG  +   ++ +G  ++ +  N LI ++   G
Sbjct: 51  RLGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICG 110

Query: 161 EVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLP 220
            +  AR+ FD++   +VV+WN +I+GY +  + KEA  +F  M+   +EP   + + VL 
Sbjct: 111 NMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLD 170

Query: 221 ACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT 280
           AC     +++G+  H  V       +     ALV MYVK GS++ AR VFD + +RDV T
Sbjct: 171 ACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVST 230

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           +  MI GYA +GD   A  LF  MQ EG +PN ++  S+L  CS+   L  G+++HA  +
Sbjct: 231 FNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCM 290

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
              L  +V V TALI MY  C  ++ + +VF +   +  V W  ++ G   N     A  
Sbjct: 291 NTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFG 350

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
           LF  M  E ++P+  T   ++ A A  ADL  A  IH  ++R GF + + V T L+ +Y+
Sbjct: 351 LFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYA 410

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           KCG+++ A ++F    +  +D+V WS +I  Y  +G GE A   F  M ++ V+P+ VT+
Sbjct: 411 KCGAIKDARQVFD--AMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTY 468

Query: 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
            + L+AC H G LD G++++   ++     S       ++++  + G ++ A  +   M 
Sbjct: 469 INLLNACGHLGALDLGMEIYTQAIKA-DLVSHIPVGNALINMNVKHGSIERARYIFENMV 527

Query: 581 LKPTHAVWGALLGACVIHGN 600
            +     W  ++G   +HGN
Sbjct: 528 QRDV-VTWNVMIGGYSLHGN 546


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/682 (34%), Positives = 380/682 (55%), Gaps = 47/682 (6%)

Query: 27  KSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSN------VRILF-----DEMSERS 74
           K++   KQLH  I  +G        + LV A   +++       R  F     D  S+ +
Sbjct: 36  KTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDA 95

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
            F+ N++++ Y+  G   +++ +++ ML LG   P++YT+P V+  CT +A    GI +H
Sbjct: 96  LFMLNSLIRGYSSAGLGREAILLYVRMLVLG-VTPNHYTFPFVLSGCTKIAAFCEGIQVH 154

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           G V+  G + D F+ NCLI  Y   G +    KVF+ M E +VVSW +LI GY +    K
Sbjct: 155 GSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPK 214

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           EA+ +F  M+++G+ P   ++V V+ AC  L++++MG  +   +    L  N    NALV
Sbjct: 215 EAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALV 274

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           DMY+KCG+++ A+ +FD   +R++V + ++++ YA  G  R AL +   M  +G RP+ +
Sbjct: 275 DMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRV 334

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T+ S +SA + L  L  G+  H + I+  LE    +   +IDMY KC   +++ +VF   
Sbjct: 335 TMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLM 394

Query: 375 SKKKTVPWNAILAGCVHNG-------------------------------LARKAVELFR 403
           S K  V WN++ AG + NG                               L   A+ELFR
Sbjct: 395 SNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFR 454

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
           +M  E ++ +  T+  +  A   L   + A  +H Y+ + G    + ++T L+D++++CG
Sbjct: 455 EMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCG 514

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
             +SA ++F+++   ++D+  W+  I    M G+GE A  LF +M+  GV+P+ V F   
Sbjct: 515 DPQSAMQVFNKM--TERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQV 572

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           L ACSHGG +++GL +F+ M E+H    + +HY C+VDLLGRAG L EA+DLI++MP++P
Sbjct: 573 LTACSHGGQVEQGLHIFSLM-EDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEP 631

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643
              VWG+LL AC +H NVE+   AA+ + EL P+  G +VLLS +Y++  +W D   VR 
Sbjct: 632 NDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRL 691

Query: 644 VMDEKGLRKAPAHSLIEVRNIL 665
            + EKG+RK P  S ++V  ++
Sbjct: 692 NLREKGVRKVPGSSSVQVNGVI 713


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/607 (35%), Positives = 355/607 (58%), Gaps = 5/607 (0%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +  +   R +F+EM  R    +N+++  Y  NG  +++L+++     LG   PD+YT   
Sbjct: 222 FNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVV-PDSYTMSS 280

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           V++AC  L   + G  +HG +   G   D  V N L++MY  F  +   R++FD M    
Sbjct: 281 VLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRD 340

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
            VSWNT+I GY +    +E++ +F  M+    +PD  ++ S+L ACG+L ++E G+ +H+
Sbjct: 341 AVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHD 399

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            +       +  A N L++MY KCG++  ++ VF  M  +D V+W SMIN Y  NG    
Sbjct: 400 YMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDE 459

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A+ LF++M+ + V+P+S+T   LLS  + L  L  G+ LH    K      ++V   L+D
Sbjct: 460 AMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVD 518

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MYAKC  +  S +VF     +  + WN I+A CVH+      + +  +M  E V P+ AT
Sbjct: 519 MYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMAT 578

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           + S+LP  ++LA  +Q   IH  + + G  S V V   LI++YSKCGSL ++ ++F    
Sbjct: 579 MLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFK--L 636

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           +K KD+V W+ +I+  GM+G G+ AV  F EM  +G+ P+ V F + + ACSH GL++EG
Sbjct: 637 MKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEG 696

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
           L+ F+ M ++++   R +HY C+VDLL R+  LD+A D I +MPLKP  ++WGALL AC 
Sbjct: 697 LNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACR 756

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           + G+ E+ +  ++ + EL P++ G YVL+S +Y+A+ +W    ++R  +  +GL+K P  
Sbjct: 757 MSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGC 816

Query: 657 SLIEVRN 663
           S +E++N
Sbjct: 817 SWMEIQN 823



 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 199/605 (32%), Positives = 308/605 (50%), Gaps = 30/605 (4%)

Query: 25  ATKSIAGTKQLH---AFIITSGPLFTHLRSS-LVRAYGH----VSNVRILFDEMSERSSF 76
           A  S A T QLH   + IIT G   + + S+ L+  Y H     S+  +        + +
Sbjct: 81  ALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVY 140

Query: 77  LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGR 136
            +N++++    NG   ++L ++    R+    PD YT+P VI AC  L   ++  ++H R
Sbjct: 141 XWNSIIRALTHNGLFSEALSLYSETQRI-RLQPDTYTFPSVINACAGLLDFEMAKSIHDR 199

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEA 196
           VL  GF  D ++GN LI MY  F ++  ARKVF+ M    VVSWN+LISGY  N Y  EA
Sbjct: 200 VLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEA 259

Query: 197 LVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
           L ++      GV PD  ++ SVL ACG L  +E G +IH L+    + K++   N L+ M
Sbjct: 260 LEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSM 319

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM--QFEGVRPNSL 314
           Y K   + + R +FD+M  RD V+W +MI GY+  G    ++ LF  M  QF   +P+ L
Sbjct: 320 YCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQF---KPDLL 376

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           TI S+L AC  L  L+ G+ +H + I    EC+      LI+MYAKC  +  S +VF+  
Sbjct: 377 TITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGM 436

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
             K +V WN+++   + NG   +A++LF+ M  + V+P+  T   LL     L DL    
Sbjct: 437 KCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLLSMSTQLGDLXLGK 495

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            +HC L + GF S + VS  L+D+Y+KCG +  + K+F    +K +DI+ W+ IIA    
Sbjct: 496 ELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFEN--MKARDIITWNTIIASCVH 553

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD----LFNFMLENHQTC 550
                  + +   M   GV P+  T  S L  CS      +G +    +F   LE+    
Sbjct: 554 SEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPV 613

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
                   ++++  + G L  ++ + + M  K     W AL+ AC ++G    G+ A + 
Sbjct: 614 GNV-----LIEMYSKCGSLRNSFQVFKLMKTKDV-VTWTALISACGMYGE---GKKAVRA 664

Query: 611 LFELE 615
             E+E
Sbjct: 665 FGEME 669


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/651 (35%), Positives = 373/651 (57%), Gaps = 8/651 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERS 74
           LV+   A K+  G + L   + + G      + SSL++AY   G +     LFD + ++ 
Sbjct: 140 LVKACVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKD 199

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
             ++N ++  YA+ GAS   +K F  ++R+ + +P+  T+  V+  C       LG+ LH
Sbjct: 200 CVIWNVMLNGYAKCGASDSVIKGF-SLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLH 258

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           G V+++G D +  + N L++MY   G    A K+F  M     V+WN +ISGY ++   +
Sbjct: 259 GLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLME 318

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           E+L+ F  M+ SGV PD  +  S+LP+    + +E  R IH  +    +  +I   +AL+
Sbjct: 319 ESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALI 378

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           D Y KC  V+ A+ +F + +  DVV +T+MI+GY  NG   +AL +F+ +    + PN +
Sbjct: 379 DAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEI 438

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T+ S+L     L  LK GR LH + IK+  +    +  A+IDMYAKC  + L++++F R 
Sbjct: 439 TLVSILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRL 498

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
           SK+  V WN+++  C  +     A+++FRQM V  +  +  ++++ L A A L       
Sbjct: 499 SKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGK 558

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            IH ++I++     V   + LID+Y+KCG+L++A  +F    +K+K+IV W+ IIA YG 
Sbjct: 559 AIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDT--MKEKNIVSWNSIIAAYGN 616

Query: 495 HGHGETAVSLFKEMVQ-SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
           HG  + ++ LF EMV+ SG +P+++TF   +  C H G +DEG+  F  M +++    + 
Sbjct: 617 HGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQ 676

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
           +HY C+VDL GRAGRL EAY+ +++MP  P   VWG LLGA  +H NVEL +VA+  L +
Sbjct: 677 EHYACVVDLFGRAGRLSEAYETVKSMPFPPDAGVWGTLLGASRLHKNVELAKVASSRLMD 736

Query: 614 LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
           L+P N G YVL+S  ++    W+    VR +M E+ ++K P +S IE+  I
Sbjct: 737 LDPWNSGYYVLISNAHANTGEWESVTKVRSLMKEREVQKIPGYSWIEINKI 787



 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 175/603 (29%), Positives = 308/603 (51%), Gaps = 14/603 (2%)

Query: 6   HHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIIT---SGPLFTHLRS-SLVRAYGHVS 61
             TLP+   L   L+Q  +    +   KQ+HAF+I    SG  +T  R   +    G  S
Sbjct: 27  EETLPRRLSL---LLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFS 83

Query: 62  NVRILFDEMSERSSFL--YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           N   +F  +  R S +  +N+++  + + G  + +L  +  ML  G  +PD  T+P ++K
Sbjct: 84  NCGKMFYRLDSRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFG-VSPDVSTFPCLVK 142

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           AC  L   K    L   V   G D + FV + LI  Y+ +G++  A K+FD + +   V 
Sbjct: 143 ACVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVI 202

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WN +++GY K   +   +  F  M    + P+  +   VL  C     I++G  +H LV 
Sbjct: 203 WNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVV 262

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
              L    +  N+L+ MY KCG  ++A  +F  MS  D VTW  MI+GY  +G +  +L 
Sbjct: 263 VSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLI 322

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
            F  M   GV P+++T  SLL + S    L+  R +H + ++ ++  ++ + +ALID Y 
Sbjct: 323 FFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYF 382

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           KC  V ++ ++F++ +    V + A+++G +HNGL   A+E+FR ++   + PN+ TL S
Sbjct: 383 KCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVS 442

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           +LP    L  L+    +H ++I+ GF +   +   +ID+Y+KCG +  A++IF    +  
Sbjct: 443 ILPVIGGLLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGR--LSK 500

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
           +DIV W+ +I       +   A+ +F++M  SG+  + V+ ++AL AC++      G  +
Sbjct: 501 RDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAI 560

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
             FM++ H         + ++D+  + G L  A ++  TM  K   + W +++ A   HG
Sbjct: 561 HGFMIK-HSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVS-WNSIIAAYGNHG 618

Query: 600 NVE 602
            ++
Sbjct: 619 KLK 621


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/653 (36%), Positives = 361/653 (55%), Gaps = 14/653 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTH-----LRSSLVRAY---GHVSNVRILFDEM 70
           ++Q  +  +S+ G K+ H F++ +  L        L   LV  Y   G + N R +FDEM
Sbjct: 97  VLQLCSEVRSLEGGKRAH-FLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEM 155

Query: 71  SERSSF-LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
            + S   ++  +M  YA+ G   + + +F  M   G   PD YT   V+K    L   + 
Sbjct: 156 PQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCG-VRPDAYTISCVLKCIAGLGSIED 214

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  +HG +   GF     VGN L+A Y      K A  VFD M    V+SWN++ISG   
Sbjct: 215 GEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTS 274

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N    +A+ +F  M   G E D A+++SVLPAC  L  + +GR++H            + 
Sbjct: 275 NGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSL 334

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
            N L+DMY  C        +F  M +++VV+WT+MI  Y   G      GLFQ M  EG 
Sbjct: 335 ANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGT 394

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
           RP+   I S L A +    LK G+S+H + I+  +E  + V  AL++MY KC  ++ +  
Sbjct: 395 RPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKL 454

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           +F     K  + WN ++ G   N LA +A  LF +ML+++  PN  T+  +LPA A L+ 
Sbjct: 455 IFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQL-RPNAVTMTCILPAAASLSS 513

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L++   +H Y +R G+L    V+  LID+Y KCG+L  A ++F  +   +K+++ W++++
Sbjct: 514 LERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRL--SNKNLISWTIMV 571

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           AGYGMHG G  A++LF++M  SG+ P+  +F++ L+ACSH GL DEG   F+ M + H+ 
Sbjct: 572 AGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKI 631

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
             R  HYTC+VDLL   G L EAY+ I +MP++P  ++W +LL  C IH NV+L E  A+
Sbjct: 632 EPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAE 691

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
            +FELEPEN G YVLL+ +Y+   RW+    +++ +  +GLR+    S IE +
Sbjct: 692 RVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAK 744



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 149/445 (33%), Positives = 233/445 (52%), Gaps = 7/445 (1%)

Query: 104 LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT--GFD-MDTFVGNCLIAMYMNFG 160
           LG    D+ +Y  V++ C+++   + G   H  V  +  G D MD  +G  L+ MY+  G
Sbjct: 84  LGSDGVDDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCG 143

Query: 161 EVKAARKVFDAMWEHSVVS-WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVL 219
           +++ AR+VFD M + S V  W  L+SGY K    +E +++F  M   GV PD  ++  VL
Sbjct: 144 DLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVL 203

Query: 220 PACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVV 279
                L  IE G ++H L+     G   A  NAL+  Y K     +A LVFD M  RDV+
Sbjct: 204 KCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVI 263

Query: 280 TWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWT 339
           +W SMI+G   NG    A+ LF  M  EG   +S T+ S+L AC+ L+ L  GR +H ++
Sbjct: 264 SWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYS 323

Query: 340 IKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAV 399
           +K     +  +   L+DMY+ C+  + + ++F    +K  V W A++      GL  K  
Sbjct: 324 VKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVA 383

Query: 400 ELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459
            LF++M +E   P+   + S L A+A    L+   ++H Y IR G   V+ V+  L+++Y
Sbjct: 384 GLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMY 443

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
            KCG++E A  IF    +  KD++ W+ +I GY  +     A SLF EM+   ++PN VT
Sbjct: 444 VKCGNMEEAKLIFD--GVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVT 500

Query: 520 FTSALHACSHGGLLDEGLDLFNFML 544
            T  L A +    L+ G ++  + L
Sbjct: 501 MTCILPAAASLSSLERGREMHAYAL 525


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 244/644 (37%), Positives = 366/644 (56%), Gaps = 18/644 (2%)

Query: 28  SIAGTKQLHAFIITSGPLFT-HLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMK 83
           ++   K LHA ++ S  +    + + LV  Y ++ NV   R  FD +  R  + +N ++ 
Sbjct: 66  NLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMIS 125

Query: 84  MYAQNGASHDSLKMF-LGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
            Y + G S + ++ F L ML  G   PD  T+P V+KAC ++     G  +H   L  GF
Sbjct: 126 GYGRAGYSSEVIRCFSLFMLSSG-LQPDYRTFPSVLKACRNVT---DGNKIHCLALKFGF 181

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
             D +V   LI +Y  +G V  AR +FD M    + SWN +ISGY ++  AKEAL + D 
Sbjct: 182 MWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDG 241

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           +       D  +VVS+L AC    +   G  IH       L   +   N L+D+Y + GS
Sbjct: 242 LRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGS 297

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           + + + VFDRM  RD+++W S+I  Y LN     A+ LFQ M+   ++P+ LT+ SL S 
Sbjct: 298 LKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASI 357

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECE-VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
            S L  ++  RS+  +T+++    E + +  A++ MYAK  LV  +  VF     K  + 
Sbjct: 358 LSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVIS 417

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVE--VVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           WN I++G   NG A +A+E++  M  E   +  N  T  S+LPA +    L+Q M +H  
Sbjct: 418 WNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGR 477

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           L++ G    V V T L D+Y KCG L+ A  +F +IP  +   V W+ +IA +G HGHGE
Sbjct: 478 LLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNS--VPWNTLIACHGFHGHGE 535

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
            AV LFKEM+  GV+P+ +TF + L ACSH GL+DEG   F  M  ++       HY C+
Sbjct: 536 KAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCM 595

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENP 619
           VDL GRAG+L+ A + I++MPL+P  ++WGALL AC +HGNV+LG++A++ LFE+EPE+ 
Sbjct: 596 VDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHV 655

Query: 620 GNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           G +VLLS +Y++  +W+  + +R +   KGLRK P  S +EV N
Sbjct: 656 GYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDN 699



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 167/363 (46%), Gaps = 16/363 (4%)

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
           Y   ++  + +H  +      +N+     LV++Y   G+V  AR  FD +  RDV  W  
Sbjct: 63  YCTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNL 122

Query: 284 MINGYALNGDVRNALGLFQL-MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           MI+GY   G     +  F L M   G++P+  T  S+L AC +   +  G  +H   +K 
Sbjct: 123 MISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRN---VTDGNKIHCLALKF 179

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVEL- 401
               +V V  +LI +Y +   V  +  +F     +    WNA+++G   +G A++A+ L 
Sbjct: 180 GFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLS 239

Query: 402 --FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459
              R M       +  T+ SLL A     D  + + IH Y I++G  S + VS  LID+Y
Sbjct: 240 DGLRAM-------DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLY 292

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
           ++ GSL+   K+F  + +  +D++ W+ II  Y ++     A+ LF+EM  S +QP+ +T
Sbjct: 293 AEFGSLKDCQKVFDRMYV--RDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLT 350

Query: 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
             S     S  G +     +  F L              +V +  + G +D A  +   +
Sbjct: 351 LISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL 410

Query: 580 PLK 582
           P K
Sbjct: 411 PNK 413


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/559 (40%), Positives = 331/559 (59%), Gaps = 8/559 (1%)

Query: 107 YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAA 165
           + PD +T+P +I+A    A       LH   L  G      F    L+  Y+ FG +  A
Sbjct: 66  FRPDGFTFPSLIRAAPSNAS---AAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEA 122

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
            KVFD M E  V +WN ++SG  +NA A EA+ +F  M+  GV  D  +V SVLP C  L
Sbjct: 123 YKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLL 182

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
            +  +  ++H       L K +   NAL+D+Y K G + EA+ VF  M  RD+VTW S+I
Sbjct: 183 GDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSII 242

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           +G    G    AL +FQ M+  GV P+ LT+ SL SA +     +  +SLH + +++  +
Sbjct: 243 SGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWD 302

Query: 346 CE-VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
            + +I   A++DMYAK + ++ + ++F     + +V WN ++ G + NGLA +AVE +  
Sbjct: 303 VDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGH 362

Query: 405 MLV-EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
           M   E ++    T  S+LPAY+ L  LQQ M +H   I+ G    V V T LID+Y+KCG
Sbjct: 363 MQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCG 422

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            L  A  +F ++P +      W+ II+G G+HGHG  A++LF  M Q G++P+ VTF S 
Sbjct: 423 KLAEAMLLFEKMPRRSTG--PWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSL 480

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           L ACSH GL+D+G   F+ M   +     A HY C+ D+LGRAG+LDEA++ I+ MP+KP
Sbjct: 481 LAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKP 540

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643
             AVWGALLGAC IHGNVE+G+VA++ LFEL+PEN G YVL+S +Y+ V +W   + VR 
Sbjct: 541 DSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRS 600

Query: 644 VMDEKGLRKAPAHSLIEVR 662
           ++  + L+K P  S IEV+
Sbjct: 601 LVRRQNLQKTPGWSSIEVK 619



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 157/488 (32%), Positives = 245/488 (50%), Gaps = 20/488 (4%)

Query: 25  ATKSIAGTKQLHAFIITSG----PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFL 77
           A  S A   QLHA  +  G     +FT    SLV AY   G +S    +FDEMSER    
Sbjct: 79  AAPSNASAAQLHACALRLGLVRPSVFT--SGSLVHAYLRFGRISEAYKVFDEMSERDVPA 136

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N ++    +N  + +++ +F  M+  G    D  T   V+  C  L  + L + +H   
Sbjct: 137 WNAMLSGLCRNARAAEAVGLFGRMVGEGVAG-DTVTVSSVLPMCVLLGDQVLALVMHVYA 195

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           +  G D + FV N LI +Y   G ++ A+ VF  M    +V+WN++ISG  +      AL
Sbjct: 196 VKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAAL 255

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG---KNIAAWNALV 254
            +F  M  SGV PD  ++VS+  A     +    + +H  V   R G    +I A NA+V
Sbjct: 256 KMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVM--RRGWDVDDIIAGNAIV 313

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ-FEGVRPNS 313
           DMY K  ++  A+ +FD M  +D V+W ++I GY  NG    A+  +  MQ  EG++   
Sbjct: 314 DMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQ 373

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            T  S+L A S L  L++G  +HA +IK  L  +V V T LID+YAKC  +  +  +F +
Sbjct: 374 GTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEK 433

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--YAILADLQ 431
             ++ T PWNAI++G   +G   +A+ LF +M  E ++P+  T  SLL A  +A L D  
Sbjct: 434 MPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQG 493

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           ++       + Y  + + +    + D+  + G L+ A      +PIK  D  VW  ++  
Sbjct: 494 RSF-FDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIK-PDSAVWGALLGA 551

Query: 492 YGMHGHGE 499
             +HG+ E
Sbjct: 552 CRIHGNVE 559


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/588 (37%), Positives = 352/588 (59%), Gaps = 7/588 (1%)

Query: 77  LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGR 136
           L+N +M    +N    + L++F  +L      PD +TYP V+KAC+ L     G  +H  
Sbjct: 264 LWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTH 323

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEA 196
           V+ +GF MD  V +  + MY      + A K+FD M E  V SWN +IS Y+++   ++A
Sbjct: 324 VIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKA 383

Query: 197 LVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVD 255
           L +F+ M  SG +PD  ++ +V+ +C  L ++E G+ IH ELV  G       + +ALVD
Sbjct: 384 LELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVS-SALVD 442

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           MY KCG +  A+ VF+++  ++VV+W SMI GY+L GD ++ + LF+ M  EG+RP   T
Sbjct: 443 MYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTT 502

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
           + S+L ACS    L+ G+ +H + I+  +E ++ V ++LID+Y KC  +  +  VF    
Sbjct: 503 LSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP 562

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
           K   V WN +++G V  G   +A+ +F  M    V+P+  T  S+LPA + LA L++   
Sbjct: 563 KTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKE 622

Query: 436 IHCYLIRYGFLSVVEVSTG-LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
           IH ++I    L + EV  G L+D+Y+KCG+++ A  IF+++P  ++D V W+ +IA YG 
Sbjct: 623 IHNFIIESK-LEINEVVMGALLDMYAKCGAVDEALHIFNQLP--ERDFVSWTSMIAAYGS 679

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           HG    A+ LF++M QS  +P++VTF + L ACSH GL+DEG   FN M+  +      +
Sbjct: 680 HGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVE 739

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMP-LKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
           HY+C++DLLGR GRL EAY++++  P ++    +   L  AC +H  ++LGE   + L E
Sbjct: 740 HYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIE 799

Query: 614 LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            +P++P  Y++LS +Y++V++W +   VR  + E GL+K P  S IEV
Sbjct: 800 KDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEV 847



 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 149/474 (31%), Positives = 263/474 (55%), Gaps = 6/474 (1%)

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH-SVVSWNTLISGY 187
           LG  +H +++  G   +  +   LI +Y +    ++A+ VF  +     +  WN L++  
Sbjct: 213 LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAAC 272

Query: 188 FKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
            KN    E L VF  +L    ++PD  +  SVL AC  L  +  G+M+H  V       +
Sbjct: 273 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMD 332

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           +   ++ V MY KC    +A  +FD M ERDV +W ++I+ Y  +G    AL LF+ M+ 
Sbjct: 333 VVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKV 392

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
            G +P+S+T+ +++S+C+ L  L+RG+ +H   ++     +  V +AL+DMY KC  +++
Sbjct: 393 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM 452

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           + +VF +  +K  V WN+++AG    G ++  +ELFR+M  E + P   TL+S+L A + 
Sbjct: 453 AKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSR 512

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
             +LQ    IH Y+IR    + + V++ LID+Y KCG++ SA  +F  +P    ++V W+
Sbjct: 513 SVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP--KTNVVSWN 570

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
           V+I+GY   G    A+ +F +M ++GV+P+ +TFTS L ACS   +L++G ++ NF++E+
Sbjct: 571 VMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIES 630

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
               +       ++D+  + G +DEA  +   +P +     W +++ A   HG 
Sbjct: 631 KLEINEV-VMGALLDMYAKCGAVDEALHIFNQLPER-DFVSWTSMIAAYGSHGQ 682



 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/469 (31%), Positives = 255/469 (54%), Gaps = 8/469 (1%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAYGHVS---NVRILFDEMSERSSFLYNTVMKMYAQN 88
           K +H  +I SG  +   + SS V  Y   +   +   LFDEM ER    +N V+  Y Q+
Sbjct: 318 KMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQD 377

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G    +L++F  M ++  + PD+ T   VI +C  L   + G  +H  ++ +GF +D FV
Sbjct: 378 GQPEKALELFEEM-KVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFV 436

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            + L+ MY   G ++ A++VF+ +   +VVSWN++I+GY     +K  + +F  M + G+
Sbjct: 437 SSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGI 496

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P   ++ S+L AC     +++G+ IH  +   R+  +I   ++L+D+Y KCG++  A  
Sbjct: 497 RPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAEN 556

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VF  M + +VV+W  MI+GY   G    AL +F  M+  GV+P+++T  S+L ACS L  
Sbjct: 557 VFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAV 616

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L++G+ +H + I+  LE   +V  AL+DMYAKC  V  +  +F +  ++  V W +++A 
Sbjct: 617 LEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAA 676

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--YAILADLQQAMNIHCYLIRYGFL 446
              +G A +A++LF +M     +P+  T  ++L A  +A L D +     +  +  YGF 
Sbjct: 677 YGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVD-EGCYYFNQMIAEYGFK 735

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
             VE  + LID+  + G L  A++I    P   +D+ + S + +   +H
Sbjct: 736 PAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLH 784


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/588 (37%), Positives = 352/588 (59%), Gaps = 7/588 (1%)

Query: 77  LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGR 136
           L+N +M    +N    + L++F  +L      PD +TYP V+KAC+ L     G  +H  
Sbjct: 72  LWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTH 131

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEA 196
           V+ +GF MD  V +  + MY      + A K+FD M E  V SWN +IS Y+++   ++A
Sbjct: 132 VIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKA 191

Query: 197 LVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVD 255
           L +F+ M  SG +PD  ++ +V+ +C  L ++E G+ IH ELV  G       + +ALVD
Sbjct: 192 LELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVS-SALVD 250

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           MY KCG +  A+ VF+++  ++VV+W SMI GY+L GD ++ + LF+ M  EG+RP   T
Sbjct: 251 MYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTT 310

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
           + S+L ACS    L+ G+ +H + I+  +E ++ V ++LID+Y KC  +  +  VF    
Sbjct: 311 LSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMP 370

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
           K   V WN +++G V  G   +A+ +F  M    V+P+  T  S+LPA + LA L++   
Sbjct: 371 KTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKE 430

Query: 436 IHCYLIRYGFLSVVEVSTG-LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
           IH ++I    L + EV  G L+D+Y+KCG+++ A  IF+++P  ++D V W+ +IA YG 
Sbjct: 431 IHNFIIESK-LEINEVVMGALLDMYAKCGAVDEALHIFNQLP--ERDFVSWTSMIAAYGS 487

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           HG    A+ LF++M QS  +P++VTF + L ACSH GL+DEG   FN M+  +      +
Sbjct: 488 HGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVE 547

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMP-LKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
           HY+C++DLLGR GRL EAY++++  P ++    +   L  AC +H  ++LGE   + L E
Sbjct: 548 HYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIE 607

Query: 614 LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            +P++P  Y++LS +Y++V++W +   VR  + E GL+K P  S IEV
Sbjct: 608 KDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEV 655



 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 152/486 (31%), Positives = 269/486 (55%), Gaps = 6/486 (1%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH- 175
           ++K C D  + K G  +H +++  G   +  +   LI +Y +    ++A+ VF  +    
Sbjct: 9   LLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPL 68

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMI 234
            +  WN L++   KN    E L VF  +L    ++PD  +  SVL AC  L  +  G+M+
Sbjct: 69  DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMV 128

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H  V       ++   ++ V MY KC    +A  +FD M ERDV +W ++I+ Y  +G  
Sbjct: 129 HTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQP 188

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             AL LF+ M+  G +P+S+T+ +++S+C+ L  L+RG+ +H   ++     +  V +AL
Sbjct: 189 EKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSAL 248

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           +DMY KC  ++++ +VF +  +K  V WN+++AG    G ++  +ELFR+M  E + P  
Sbjct: 249 VDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTL 308

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
            TL+S+L A +   +LQ    IH Y+IR    + + V++ LID+Y KCG++ SA  +F  
Sbjct: 309 TTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQN 368

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
           +P    ++V W+V+I+GY   G    A+ +F +M ++GV+P+ +TFTS L ACS   +L+
Sbjct: 369 MP--KTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLE 426

Query: 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           +G ++ NF++E+    +       ++D+  + G +DEA  +   +P +     W +++ A
Sbjct: 427 KGKEIHNFIIESKLEINEV-VMGALLDMYAKCGAVDEALHIFNQLPER-DFVSWTSMIAA 484

Query: 595 CVIHGN 600
              HG 
Sbjct: 485 YGSHGQ 490



 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 148/469 (31%), Positives = 255/469 (54%), Gaps = 8/469 (1%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAYGHVS---NVRILFDEMSERSSFLYNTVMKMYAQN 88
           K +H  +I SG  +   + SS V  Y   +   +   LFDEM ER    +N V+  Y Q+
Sbjct: 126 KMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQD 185

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G    +L++F  M ++  + PD+ T   VI +C  L   + G  +H  ++ +GF +D FV
Sbjct: 186 GQPEKALELFEEM-KVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFV 244

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            + L+ MY   G ++ A++VF+ +   +VVSWN++I+GY     +K  + +F  M + G+
Sbjct: 245 SSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGI 304

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P   ++ S+L AC     +++G+ IH  +   R+  +I   ++L+D+Y KCG++  A  
Sbjct: 305 RPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAEN 364

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VF  M + +VV+W  MI+GY   G    AL +F  M+  GV+P+++T  S+L ACS L  
Sbjct: 365 VFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAV 424

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L++G+ +H + I+  LE   +V  AL+DMYAKC  V  +  +F +  ++  V W +++A 
Sbjct: 425 LEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAA 484

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--YAILADLQQAMNIHCYLIRYGFL 446
              +G A +A++LF +M     +P+  T  ++L A  +A L D +     +  +  YGF 
Sbjct: 485 YGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVD-EGCYYFNQMIAEYGFK 543

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
             VE  + LID+  + G L  A++I    P   +D+ + S + +   +H
Sbjct: 544 PAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACHLH 592



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 116/394 (29%), Positives = 208/394 (52%), Gaps = 10/394 (2%)

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D   ++S+L  C   K ++ G++IH+ +    L  NI    +L+++Y  C     A+LVF
Sbjct: 2   DTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVF 61

Query: 271 DRMSER-DVVTWTSMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYY 328
             +    D+  W  ++     N      L +F +L+ F  ++P++ T  S+L ACS L  
Sbjct: 62  QTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGR 121

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           +  G+ +H   IK     +V+V ++ + MYAKCN+ + + ++F    ++    WN +++ 
Sbjct: 122 VGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISC 181

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
              +G   KA+ELF +M V   +P+  TL +++ + A L DL++   IH  L+R GF   
Sbjct: 182 YYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALD 241

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             VS+ L+D+Y KCG LE A ++F +  I+ K++V W+ +IAGY + G  ++ + LF+ M
Sbjct: 242 GFVSSALVDMYGKCGCLEMAKEVFEQ--IQRKNVVSWNSMIAGYSLKGDSKSCIELFRRM 299

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRA 566
            + G++P   T +S L ACS    L  G  +  +++ N      AD +  + ++DL  + 
Sbjct: 300 DEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNR---VEADIFVNSSLIDLYFKC 356

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           G +  A ++ + MP K     W  ++   V  G+
Sbjct: 357 GNIGSAENVFQNMP-KTNVVSWNVMISGYVKVGS 389


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/636 (35%), Positives = 363/636 (57%), Gaps = 10/636 (1%)

Query: 34  QLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---RILFDE--MSERSSFLYNTVMKMYAQ 87
           ++H   +  G   F  + ++L+  YG   ++   R+LFD   M +  +  +N+++  +  
Sbjct: 166 EIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVT 225

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
            G   ++L +F  M  +G    + YT+   ++   D ++ KLG+ +HG  L +    D +
Sbjct: 226 EGKCLEALSLFRRMQEVG-VASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVY 284

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           V N LIAMY   G ++ A +VF +M     VSWNTL+SG  +N   ++AL  F  M  S 
Sbjct: 285 VANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSA 344

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
            +PD  SV++++ A G    +  G+ +H       L  N+   N L+DMY KC  V    
Sbjct: 345 QKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMG 404

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
             F+ M E+D+++WT++I GYA N     A+ LF+ +Q +G+  + + IGS+L ACS L 
Sbjct: 405 YAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLK 464

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
                R +H +  K++L  +++++ A++++Y +      + + F     K  V W +++ 
Sbjct: 465 SRNFIREIHGYVFKRDL-ADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMIT 523

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
            CVHNGL  +A+ELF  +    ++P+   + S L A A L+ L++   IH +LIR GF  
Sbjct: 524 CCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFL 583

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
              +++ L+D+Y+ CG++E++ K+F  +  K +D+++W+ +I   GMHG G  A++LFK+
Sbjct: 584 EGPIASSLVDMYACCGTVENSRKMFHSV--KQRDLILWTSMINANGMHGCGNEAIALFKK 641

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M    V P+ +TF + L+ACSH GL+ EG   F  M   +Q     +HY C+VDLL R+ 
Sbjct: 642 MTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSN 701

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
            L+EAY  +R+MP+KP+  VW ALLGAC IH N ELGE+AAK L + + +N G Y L+S 
Sbjct: 702 SLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISN 761

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +++A  RW D E VR  M   GL+K P  S IEV N
Sbjct: 762 IFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDN 797



 Score =  251 bits (642), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 189/655 (28%), Positives = 316/655 (48%), Gaps = 47/655 (7%)

Query: 25  ATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTV 81
           A K++   +QLHA ++ S  L   L + L+  Y   G + +   +FDEM+ER+ F +N +
Sbjct: 58  AVKALPQGQQLHARLLKS-HLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAM 116

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           M  +  +G   ++++++  M  LG    D  T+P V+KAC  L   +LG  +HG  +  G
Sbjct: 117 MGAFVSSGKYLEAIELYKEMRVLG-VAIDACTFPSVLKACGALGESRLGAEIHGVAVKCG 175

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDA--MWEHSVVSWNTLISGYFKNAYAKEALVV 199
           F    FV N LIAMY   G++  AR +FD   M +   VSWN++IS +       EAL +
Sbjct: 176 FGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSL 235

Query: 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVK 259
           F  M + GV  +  + V+ L        +++G  IH          ++   NAL+ MY K
Sbjct: 236 FRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAK 295

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
           CG + +A  VF  M  RD V+W ++++G   N   R+AL  F+ MQ    +P+ +++ +L
Sbjct: 296 CGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNL 355

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           ++A      L  G+ +HA+ I+  L+  + +   LIDMYAKC  VK     F    +K  
Sbjct: 356 IAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDL 415

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           + W  I+AG   N    +A+ LFR++ V+ ++ +   + S+L A + L        IH Y
Sbjct: 416 ISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGY 475

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           + +   L+ + +   ++++Y + G  + A + F    I+ KDIV W+ +I     +G   
Sbjct: 476 VFKRD-LADIMLQNAIVNVYGEVGHRDYARRAFES--IRSKDIVSWTSMITCCVHNGLPV 532

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM------LENHQTCSRA 553
            A+ LF  + Q+ +QP+ +   SAL A ++   L +G ++  F+      LE     S  
Sbjct: 533 EALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLV 592

Query: 554 DHYTC------------------------IVDLLGRAGRLDEAYDLIRTMP---LKPTHA 586
           D Y C                        +++  G  G  +EA  L + M    + P H 
Sbjct: 593 DMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHI 652

Query: 587 VWGALLGACVIHGNVELGE---VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDA 638
            + ALL AC   G +  G+      K+ ++LEP  P +Y  +  L S     ++A
Sbjct: 653 TFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPW-PEHYACMVDLLSRSNSLEEA 706



 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 167/566 (29%), Positives = 276/566 (48%), Gaps = 34/566 (6%)

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
           + + +++  C  +     G  LH R+L +   +  F+   L+ MY   G +K A KVFD 
Sbjct: 47  HAHSLLLDLCVAVKALPQGQQLHARLLKS--HLSAFLATKLLHMYEKCGSLKDAVKVFDE 104

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M E ++ +WN ++  +  +    EA+ ++  M   GV  D  +  SVL ACG L E  +G
Sbjct: 105 MTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLG 164

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFD--RMSERDVVTWTSMINGYA 289
             IH +      G+ +   NAL+ MY KCG +  AR++FD   M + D V+W S+I+ + 
Sbjct: 165 AEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHV 224

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
             G    AL LF+ MQ  GV  N+ T  + L       ++K G  +H   +K N   +V 
Sbjct: 225 TEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVY 284

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           V  ALI MYAKC  ++ + +VFA    +  V WN +L+G V N L R A+  FR M    
Sbjct: 285 VANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSA 344

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
            +P+  ++ +L+ A     +L     +H Y IR G  S +++   LID+Y+KC  ++  H
Sbjct: 345 QKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVK--H 402

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
             ++   + +KD++ W+ IIAGY  +     A++LF+++   G+  + +   S L ACS 
Sbjct: 403 MGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACS- 461

Query: 530 GGLLDEGLDLFNFMLENHQTCSRAD-----HYTCIVDLLGRAGRLD---EAYDLIRTMPL 581
                 GL   NF+ E H    + D         IV++ G  G  D    A++ IR+  +
Sbjct: 462 ------GLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDI 515

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLLSKLYSA--VRRWKD 637
                 W +++  CV +G   L   A +  + L+  N  P +  ++S L +   +   K 
Sbjct: 516 ----VSWTSMITCCVHNG---LPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKK 568

Query: 638 AENVRDVMDEKG--LRKAPAHSLIEV 661
            + +   +  KG  L    A SL+++
Sbjct: 569 GKEIHGFLIRKGFFLEGPIASSLVDM 594


>gi|449436034|ref|XP_004135799.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/628 (35%), Positives = 355/628 (56%), Gaps = 7/628 (1%)

Query: 39  IITSGPLF--THLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHD 93
           II + P++    L + LV AY   G + N R +FDE+ +  + L N ++  Y QN   +D
Sbjct: 79  IIITNPIYGDQFLVAKLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYND 138

Query: 94  SLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLI 153
            +++ L M+       D+YT    +KAC  L   ++G+ + G  +  G     F+G+ ++
Sbjct: 139 CIEL-LKMMSRCHLEFDSYTCNFALKACMFLLDYEMGMEVIGLAVCKGLAGGRFLGSSIL 197

Query: 154 AMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCA 213
              +  G++  A+  F  M E  VV WN +I G+ +    +E   +F  ML + +EP   
Sbjct: 198 NFLVKTGDIMCAQFFFHQMVEKDVVCWNVMIGGFMQEGLFREGYNLFLDMLYNKIEPSAV 257

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           +++S++ +CG ++ +  G+ +H  V G  + ++      L+DMY K G V  AR +F+ M
Sbjct: 258 TMISLIQSCGEMRNLTFGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENM 317

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
             R++V+W  MI+GY  NG +   L LFQ +  + V  +S T+ SL+  CS    L  G+
Sbjct: 318 PSRNLVSWNVMISGYVQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGK 377

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            LH +  ++ L+  +++ TA++D+YAKC  +  +  VF R   K  + W A+L G   NG
Sbjct: 378 ILHGFIYRRGLDLNLVLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNG 437

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
            AR A++LF QM  E V  N  TL SL+    +L  L++  ++H  L R+ F S V V T
Sbjct: 438 HARDALKLFDQMQNERVTFNALTLVSLVYCCTLLGLLREGRSVHATLTRFHFASEVVVMT 497

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            LID+Y+KC  + SA  +F +  +  KD+++++ +I+GYGMHG G  A+ ++  M + G+
Sbjct: 498 ALIDMYAKCSKINSAEMVF-KYGLTPKDVILYNSMISGYGMHGLGHKALCVYHRMNREGL 556

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
           QPNE TF S L ACSH GL++EG+ LF  M+++H T      Y CIVDLL RAGRL +A 
Sbjct: 557 QPNESTFVSLLSACSHSGLVEEGIALFQNMVKDHNTTPTDKLYACIVDLLSRAGRLRQAE 616

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633
           +LI  MP  PT  +   LL  C++H ++ELG   A  L  LE  NP  Y+ LS +Y+   
Sbjct: 617 ELINQMPFTPTSGILETLLNGCLLHKDIELGVKLADRLLSLESRNPSIYITLSNIYAKAS 676

Query: 634 RWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           RW   + VR +M E+ ++K P +S IEV
Sbjct: 677 RWDSVKYVRGLMMEQEIKKIPGYSSIEV 704



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 143/305 (46%), Gaps = 9/305 (2%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMS 71
           V+ L+Q  + T  + G K LH FI   G  L   L +++V  Y   G ++    +F+ M 
Sbjct: 360 VVSLIQLCSRTADLDGGKILHGFIYRRGLDLNLVLPTAIVDLYAKCGSLAYASSVFERMK 419

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
            ++   +  ++   AQNG + D+LK+F   ++      +  T   ++  CT L   + G 
Sbjct: 420 NKNVISWTAMLVGLAQNGHARDALKLF-DQMQNERVTFNALTLVSLVYCCTLLGLLREGR 478

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD-AMWEHSVVSWNTLISGYFKN 190
           ++H  +    F  +  V   LI MY    ++ +A  VF   +    V+ +N++ISGY  +
Sbjct: 479 SVHATLTRFHFASEVVVMTALIDMYAKCSKINSAEMVFKYGLTPKDVILYNSMISGYGMH 538

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAA 249
               +AL V+  M + G++P+ ++ VS+L AC +   +E G  +   +V           
Sbjct: 539 GLGHKALCVYHRMNREGLQPNESTFVSLLSACSHSGLVEEGIALFQNMVKDHNTTPTDKL 598

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVV-TWTSMINGYALNGDVRNALGLF-QLMQFE 307
           +  +VD+  + G + +A  + ++M          +++NG  L+ D+   + L  +L+  E
Sbjct: 599 YACIVDLLSRAGRLRQAEELINQMPFTPTSGILETLLNGCLLHKDIELGVKLADRLLSLE 658

Query: 308 GVRPN 312
              P+
Sbjct: 659 SRNPS 663


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/556 (39%), Positives = 330/556 (59%), Gaps = 8/556 (1%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKV 168
           D +T+P +++A            LH   L  G    D F    L+  Y+ FG V+ A + 
Sbjct: 70  DAFTFPPLLRAAQGPG---TAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRA 126

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           FD M    V +WN ++SG  +NA A EA+ +F  M+  GV  D  +V SVLP C  L + 
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDR 186

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
            +   +H       L   +   NA++D+Y K G + E R VFD MS RD+VTW S+I+G+
Sbjct: 187 ALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGH 246

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC-E 347
              G V +A+ +F  M+  GV P+ LT+ SL SA +    +  GRS+H + +++  +  +
Sbjct: 247 EQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGD 306

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           +I   A++DMYAK + ++ + ++F     +  V WN ++ G + NGLA +A+ ++  M  
Sbjct: 307 IIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQK 366

Query: 408 -EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
            E ++P   T  S+LPAY+ L  LQQ   +H   I+ G    V V T +ID+Y+KCG L+
Sbjct: 367 HEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLD 426

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
            A  +F + P +      W+ +I+G G+HGHG  A+SLF +M Q G+ P+ VTF S L A
Sbjct: 427 EAMLLFEQTPRRSTG--PWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAA 484

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           CSH GL+D+G + FN M   +     A HY C+VD+ GRAG+LD+A+D IR MP+KP  A
Sbjct: 485 CSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSA 544

Query: 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646
           +WGALLGAC IHGNVE+G+VA++ LFEL+P+N G YVL+S +Y+ V +W   + VR ++ 
Sbjct: 545 IWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVR 604

Query: 647 EKGLRKAPAHSLIEVR 662
            + L+K P  S IEV+
Sbjct: 605 RQNLQKTPGWSSIEVK 620



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/351 (32%), Positives = 185/351 (52%), Gaps = 27/351 (7%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYT---Y 114
           G +  VR +FD MS R    +N+++  + Q G    +++MF GM R    +PD  T    
Sbjct: 219 GMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGM-RDSGVSPDVLTLLSL 277

Query: 115 PIVIKACTDLAWRKLGIALHGRVLITGFDM-DTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
              I  C D+     G ++H  ++  G+D+ D   GN ++ MY    +++AA+++FD+M 
Sbjct: 278 ASAIAQCGDICG---GRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMP 334

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGR 232
               VSWNTLI+GY +N  A EA+ V+D M K  G++P   + VSVLPA  +L  ++ G 
Sbjct: 335 VRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGT 394

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            +H L     L  ++     ++D+Y KCG ++EA L+F++   R    W ++I+G  ++G
Sbjct: 395 RMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHG 454

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH-----AWTIK---QNL 344
               AL LF  MQ EG+ P+ +T  SLL+ACS    + +GR+       A+ IK   ++ 
Sbjct: 455 HGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHY 514

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTS--KKKTVPWNAILAGCVHNG 393
            C       ++DM+ +   +  +F  F R    K  +  W A+L  C  +G
Sbjct: 515 AC-------MVDMFGRAGQLDDAFD-FIRNMPIKPDSAIWGALLGACRIHG 557



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 139/286 (48%), Gaps = 7/286 (2%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHL--RSSLVRAYGHVSNVRI---LFDEM 70
           ++ L    A    I G + +H +++  G     +   +++V  Y  +S +     +FD M
Sbjct: 274 LLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSM 333

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
             R +  +NT++  Y QNG + +++ ++  M +     P   T+  V+ A + L   + G
Sbjct: 334 PVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQG 393

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
             +H   + TG ++D +VG C+I +Y   G++  A  +F+     S   WN +ISG   +
Sbjct: 394 TRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVH 453

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA- 249
            +  +AL +F  M + G+ PD  + VS+L AC +   ++ GR    ++      K IA  
Sbjct: 454 GHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKH 513

Query: 250 WNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDV 294
           +  +VDM+ + G +++A      M  + D   W +++    ++G+V
Sbjct: 514 YACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNV 559


>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/648 (35%), Positives = 357/648 (55%), Gaps = 8/648 (1%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRI---LFDEMSE 72
           ++ L    +  + +   K +H +++    +F  + +SL+  Y     V++   +FD+M  
Sbjct: 232 ILNLAPAVSRLEDVDSCKSIHGYVVRRC-VFGVVSNSLIDMYSKCGEVKLAHQIFDQMWV 290

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           +    + T+M  Y  +G   + L++   M R      +  +    + A T+    + G  
Sbjct: 291 KDDISWATMMAGYVHHGCYFEVLQLLDEMKR-KHIKMNKISVVNSVLAATETRDLEKGKE 349

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H   L  G   D  V   +++MY   GE+K A++ F ++    +V W+  +S   +  Y
Sbjct: 350 VHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGY 409

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
             EAL +F  M   G++PD   + S++ AC  +    +G+M+H  V    +G +I+    
Sbjct: 410 PGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATT 469

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           LV MY +C S   A  +F+RM  +DVV W ++ING+   GD R AL +F  +Q  GV+P+
Sbjct: 470 LVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPD 529

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           S T+ SLLSAC+ L  L  G   H   IK  +E E+ V+ ALIDMYAKC  +  +  +F 
Sbjct: 530 SGTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFH 589

Query: 373 RTSK-KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
                K  V WN ++AG +HNG A +A+  F QM +E V PN  T  ++LPA + L+ L+
Sbjct: 590 LNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILR 649

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           +AM  H  +IR GF+S   +   LID+Y+K G L  + K F E+  ++K  + W+ +++G
Sbjct: 650 EAMAFHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEM--ENKGTISWNAMLSG 707

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           Y MHG GE A++LF  M ++ V  + V++ S L AC H GL+ EG ++F  M E H    
Sbjct: 708 YAMHGQGEVALALFSLMQETHVPVDSVSYISVLSACRHAGLIQEGRNIFQSMTEKHNLEP 767

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
             +HY C+VDLLG AG  DE   LI  MP +P   VWGALLGAC +H NV+LGE+A   L
Sbjct: 768 SMEHYACMVDLLGCAGLFDEVLCLIDKMPTEPDAQVWGALLGACKMHSNVKLGEIALHHL 827

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
            +LEP N  +Y++LS +Y+   RW DA   R  M + GL+K P +S +
Sbjct: 828 LKLEPRNAVHYIVLSDIYAQCGRWIDARRTRSNMTDHGLKKNPGYSWV 875



 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 183/599 (30%), Positives = 302/599 (50%), Gaps = 20/599 (3%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           GH+ N R +FD+M  +    +N ++   +Q+    ++L++F  M       PD+ +   +
Sbjct: 176 GHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNL 235

Query: 118 IKACTDLAWRKLGIALHGRVL---ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
             A + L       ++HG V+   + G      V N LI MY   GEVK A ++FD MW 
Sbjct: 236 APAVSRLEDVDSCKSIHGYVVRRCVFGV-----VSNSLIDMYSKCGEVKLAHQIFDQMWV 290

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
              +SW T+++GY  +    E L + D M +  ++ +  SVV+ + A    +++E G+ +
Sbjct: 291 KDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEV 350

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H       +  +I     +V MY KCG + +A+  F  +  RD+V W++ ++     G  
Sbjct: 351 HNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYP 410

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             AL +FQ MQ EG++P+   + SL+SAC+ +   + G+ +H + IK ++  ++ V T L
Sbjct: 411 GEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTL 470

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           + MY +C     +  +F R   K  V WN ++ G    G  R A+E+F ++ +  V+P+ 
Sbjct: 471 VSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDS 530

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
            T+ SLL A A+L DL   +  H  +I+ G  S + V   LID+Y+KCGSL +A  +F  
Sbjct: 531 GTMVSLLSACALLDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLF-H 589

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
           +    KD V W+V+IAGY  +G    A+S F +M    V+PN VTF + L A S+  +L 
Sbjct: 590 LNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILR 649

Query: 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           E +  F+  +      S       ++D+  ++G+L  +      M  K T + W A+L  
Sbjct: 650 EAM-AFHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTIS-WNAMLSG 707

Query: 595 CVIHGNVELGEVAAKWLFELEPEN--PGNYVLLSKLYSAVRR---WKDAENVRDVMDEK 648
             +HG    GEVA   LF L  E   P + V    + SA R     ++  N+   M EK
Sbjct: 708 YAMHGQ---GEVALA-LFSLMQETHVPVDSVSYISVLSACRHAGLIQEGRNIFQSMTEK 762



 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 144/483 (29%), Positives = 264/483 (54%), Gaps = 17/483 (3%)

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           + ++  S  L+N++++ Y++     +++K +  M  +G   PD YT+  V+KACT     
Sbjct: 85  NSITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMG-LEPDKYTFTFVLKACTGALDF 143

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
             G+A+H  +     + D F+G  L+ MY   G +  ARKVFD M    V SWN +ISG 
Sbjct: 144 HEGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGL 203

Query: 188 FKNAYAKEALVVFDWM-LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
            +++   EAL +F  M ++ GVEPD  S++++ PA   L++++  + IH  V    +   
Sbjct: 204 SQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFGV 263

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           ++  N+L+DMY KCG V  A  +FD+M  +D ++W +M+ GY  +G     L L   M+ 
Sbjct: 264 VS--NSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKR 321

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
           + ++ N +++ + + A +    L++G+ +H + ++  +  +++V T ++ MYAKC  +K 
Sbjct: 322 KHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKK 381

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           + + F     +  V W+A L+  V  G   +A+ +F++M  E ++P+   L+SL+ A A 
Sbjct: 382 AKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAE 441

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           ++  +    +HCY+I+    S + V+T L+ +Y++C S   A  +F+ +    KD+V W+
Sbjct: 442 ISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHY--KDVVAWN 499

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGGLLDE 535
            +I G+   G    A+ +F  +  SGVQP+  T  S L AC+           HG ++  
Sbjct: 500 TLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKN 559

Query: 536 GLD 538
           G++
Sbjct: 560 GIE 562



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 178/338 (52%), Gaps = 7/338 (2%)

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           V +  L  + ++   ++ W S+I  Y+     + A+  +Q M + G+ P+  T   +L A
Sbjct: 77  VQQCTLAPNSITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKA 136

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           C+       G ++H     + LEC+V + T L+DMY K   +  + +VF +   K    W
Sbjct: 137 CTGALDFHEGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASW 196

Query: 383 NAILAGCVHNGLARKAVELFRQM-LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           NA+++G   +    +A+E+F++M + E VEP+  ++ +L PA + L D+    +IH Y++
Sbjct: 197 NAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVV 256

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           R     V  VS  LID+YSKCG ++ AH+IF ++ +KD   + W+ ++AGY  HG     
Sbjct: 257 RRCVFGV--VSNSLIDMYSKCGEVKLAHQIFDQMWVKDD--ISWATMMAGYVHHGCYFEV 312

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561
           + L  EM +  ++ N+++  +++ A +    L++G ++ N+ L+   T S     T IV 
Sbjct: 313 LQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLGMT-SDIVVATPIVS 371

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           +  + G L +A +   ++  +    VW A L A V  G
Sbjct: 372 MYAKCGELKKAKEFFLSLEGRDL-VVWSAFLSALVQAG 408


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/638 (36%), Positives = 355/638 (55%), Gaps = 17/638 (2%)

Query: 33  KQLHAFIITSGPLFT-HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           KQLHA ++ SG   +  L + L+  Y   G + + R+ FD++  +  + +N+++  YA+ 
Sbjct: 60  KQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARI 119

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G  H ++  F   L       D+YT+P VI+AC +L     G  +H  VL  GF+ D ++
Sbjct: 120 GHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNL---DDGRKVHCLVLKLGFECDVYI 176

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
               I  Y  FG V  A  +FD M    + +WN +ISG++ N    EAL VFD M    V
Sbjct: 177 AASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSV 236

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
             D  ++ S+LP C  L +I  G +IH       L  ++   NAL++MY K G +  A  
Sbjct: 237 SMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAET 296

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +F++M  RD+V+W S++  +  N     ALG++  M   GV P+ LT+ SL S  + L  
Sbjct: 297 IFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGN 356

Query: 329 LKRGRSLHAWTIKQNLEC----EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
               RS+H +  ++   C    ++ +  A+IDMYAK   +  + +VF     K  + WN+
Sbjct: 357 FLSSRSIHGFVTRR---CWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNS 413

Query: 385 ILAGCVHNGLARKAVELFRQM-LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           ++ G   NGLA +A++++  M       PN  T  S+L A++ L  L+Q M  H  LI+ 
Sbjct: 414 LITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKN 473

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
                + VST L+D+Y KCG L  A  +F E+P +    V W+ II+ +G+HG+G  AV 
Sbjct: 474 FLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSS--VSWNAIISCHGLHGYGLKAVK 531

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563
           LFKEM   GV+P+ +TF S L ACSH GL+DEG   F  M E +       HY C+VDL 
Sbjct: 532 LFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLF 591

Query: 564 GRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623
           GRAG L++A++ ++ MP++P  +VWGALLGAC IH NVEL    +  L ++E EN G YV
Sbjct: 592 GRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYV 651

Query: 624 LLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           LLS +Y+ +  W+  + VR +  ++GL+K P  S IEV
Sbjct: 652 LLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEV 689



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/370 (26%), Positives = 178/370 (48%), Gaps = 7/370 (1%)

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
           Y  ++ + + +H L+      ++I     L++ Y   G +  ARL FD++  +DV TW S
Sbjct: 52  YCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNS 111

Query: 284 MINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           MI+ YA  G    A+  F + +    ++ +  T   ++ AC +   L  GR +H   +K 
Sbjct: 112 MISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGN---LDDGRKVHCLVLKL 168

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
             EC+V +  + I  Y++   V L+  +F     +    WNA+++G   NG   +A+E+F
Sbjct: 169 GFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVF 228

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
            +M  + V  +  T++SLLP    L D+   + IH Y I+ G    + V   LI++Y+K 
Sbjct: 229 DEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKF 288

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G L SA  IF+++ +  +DIV W+ ++A +  +     A+ ++ +M   GV P+ +T  S
Sbjct: 289 GELRSAETIFNQMKV--RDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVS 346

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
                +  G       +  F+               I+D+  + G +D A  +   +P+K
Sbjct: 347 LASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVK 406

Query: 583 PTHAVWGALL 592
              + W +L+
Sbjct: 407 DVIS-WNSLI 415


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/645 (34%), Positives = 352/645 (54%), Gaps = 12/645 (1%)

Query: 23  YAATKSIAGTKQLHAFIITSG-----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFL 77
           +  + SI+   Q HA I+  G      L T L   L    G +   R +F  +     FL
Sbjct: 27  FKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRL-SDLGAIYYARDIFLSVQRPDVFL 85

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N +M+ ++ N + H SL +F  + +  +  P++ TY   I A +     + G  +HG+ 
Sbjct: 86  FNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQA 145

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           ++ G D +  +G+ ++ MY  F  V+ ARKVFD M E   + WNT+ISGY KN    E++
Sbjct: 146 IVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESI 205

Query: 198 VVF-DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
            VF D + +S    D  +++ +LPA   L+E+ +G  IH L        +       + +
Sbjct: 206 QVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISL 265

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y KCG +  A  +F      D+V + +MI+GY  NG+   +L LF+ +   G +  S T+
Sbjct: 266 YSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTL 325

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
            SL+     L  +    ++H +++K N      V TAL  +Y+K N ++ + ++F  + +
Sbjct: 326 VSLVPVSGHLMLI---YAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPE 382

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           K    WNA+++G   NGL   A+ LFR+M      PN  T+  +L A A L  L     +
Sbjct: 383 KSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWV 442

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H  +    F S + VST LI +Y+KCGS+  A ++F  +P K++  V W+ +I+GYG+HG
Sbjct: 443 HDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNE--VTWNTMISGYGLHG 500

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
           HG+ A+++F EM+ SG+ P  VTF   L+ACSH GL+ EG ++FN M+  +       HY
Sbjct: 501 HGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHY 560

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
            C+VD+LGRAG L  A   I  MP++P  +VW  LLGAC IH +  L    ++ LFEL+P
Sbjct: 561 ACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDP 620

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +N G +VLLS ++SA R +  A  VR    ++ L KAP ++LIE+
Sbjct: 621 DNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEI 665


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/618 (37%), Positives = 347/618 (56%), Gaps = 7/618 (1%)

Query: 50  RSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGE 106
           R+ L+  Y   G +++ R + D      ++ Y  ++      G+  D++ +   M R   
Sbjct: 58  RTKLLSCYAALGDLASARGVLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCP 117

Query: 107 YNPD-NYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
                +    + +KAC   A  + G  LH  V+  G   D FV N L+ MY   G+++ A
Sbjct: 118 AAAQADVVLSLALKACVRSADFRYGRRLHCDVVKAG-GADGFVMNSLVDMYAKAGDLENA 176

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           RKVFD + E +VVSW +++SG  +N  A+E LV+F+ M +  V P   ++VSVL AC  L
Sbjct: 177 RKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAML 236

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
             +  GR IH  V    L  N     +L+DMY KC  V +AR VFD +   D+V WT+MI
Sbjct: 237 GGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMI 296

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
            GY  N    +AL LF   +F  + PNS+TI +++SA + L +L  GRS+HA  +K    
Sbjct: 297 VGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTM 356

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
              +V  AL+DMYAKC  +  +  +F R   K  V WN+++AG   NG+A +++ LF +M
Sbjct: 357 ESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRM 416

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
            ++ + P+  ++ + L A   LADL      H Y I+Y F+S + V+T L+++YSKC  L
Sbjct: 417 RMQGISPDAISVVNALSACVCLADLHIGKGFHTYAIKYAFMSNIYVNTALLNLYSKCADL 476

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
            SA ++F++  + D++ V WS +I GYGM G    ++ LF EM++  + PNEV FTS L 
Sbjct: 477 PSAQRVFND--MTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILS 534

Query: 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           ACSH G++  G + F+ M  +        HY C+VD++ RAG L+EA + I+ MP+K   
Sbjct: 535 ACSHTGMVTAGKEYFDSMARHFNITPSMKHYACMVDVMARAGNLEEALEFIQNMPIKAGI 594

Query: 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645
           +VWG+ L  C +H  +E GE A K +  L PE P  YVL+S LY++  RW  ++ +R  M
Sbjct: 595 SVWGSFLHGCKLHSRLEFGEEAIKKMAALHPETPDFYVLMSNLYTSYGRWDKSQTIRRWM 654

Query: 646 DEKGLRKAPAHSLIEVRN 663
            E+GL K P  S +   N
Sbjct: 655 QEQGLVKLPGCSSVGHEN 672



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 162/331 (48%), Gaps = 10/331 (3%)

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH--ELVAGGRLGKNIAAWNALVDMYVKC 260
           + ++    D +++V +LPACG L+ +   R +H   L+    L + I A   L+  Y   
Sbjct: 12  LARASAPRDASALVLLLPACGTLRSL---RALHGRLLLLTSGLLRGIRARTKLLSCYAAL 68

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE--GVRPNSLTIGS 318
           G +  AR V D     D   +  M+      G   +A+ L + M+          + +  
Sbjct: 69  GDLASARGVLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPAAAQADVVLSL 128

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
            L AC      + GR LH   +K     +  V  +L+DMYAK   ++ + +VF R  ++ 
Sbjct: 129 ALKACVRSADFRYGRRLHCDVVKAG-GADGFVMNSLVDMYAKAGDLENARKVFDRVPERN 187

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
            V W ++L+G + NG+A + + LF +M  + V P++ T+ S+L A A+L  L Q   IH 
Sbjct: 188 VVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHG 247

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
            +I+YG  +   +S  L+D+Y+KC  +E A ++F E+     DIV+W+ +I GY  +   
Sbjct: 248 SVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEF--VDIVLWTAMIVGYTQNKRP 305

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
             A+ LF       + PN VT  + + A + 
Sbjct: 306 LDALQLFLHKKFVSIVPNSVTIATVISASAQ 336


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/658 (35%), Positives = 375/658 (56%), Gaps = 14/658 (2%)

Query: 13  THLVIKLVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY--GHV-SNVRIL 66
           T  ++ L++    +KS+   K +H  ++T G    +F  L  +L+  Y   H+  + + +
Sbjct: 3   TRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIF--LCKNLINLYLSCHLYDHAKCV 60

Query: 67  FDEMSERSSF-LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           FD M       L+N +M  Y +N    ++L++F  +L      PD+YTYP V+KAC  L 
Sbjct: 61  FDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLY 120

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
              LG  +H  ++ TG  MD  VG+ L+ MY      + A  +F+ M E  V  WNT+IS
Sbjct: 121 KYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVIS 180

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE-LVAGGRLG 244
            Y+++   KEAL  F  M + G EP+  ++ + + +C  L ++  G  IHE L+  G L 
Sbjct: 181 CYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLL 240

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            +  + +ALVDMY KCG +  A  VF++M ++ VV W SMI+GY L GD  + + LF+ M
Sbjct: 241 DSFIS-SALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRM 299

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
             EGV+P   T+ SL+  CS    L  G+ +H +TI+  ++ +V + ++L+D+Y KC  V
Sbjct: 300 YNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKV 359

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
           +L+  +F    K K V WN +++G V  G   +A+ LF +M    VEP+  T  S+L A 
Sbjct: 360 ELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTAC 419

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           + LA L++   IH  +I     +   V   L+D+Y+KCG+++ A  +F  +P   +D+V 
Sbjct: 420 SQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP--KRDLVS 477

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+ +I  YG HG    A+ LF EM+QS ++P+ VTF + L AC H GL+DEG   FN M+
Sbjct: 478 WTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMV 537

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP-LKPTHAVWGALLGACVIHGNVEL 603
             +    R +HY+C++DLLGRAGRL EAY++++  P ++    +   L  AC +H N++L
Sbjct: 538 NVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDL 597

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           G   A+ L + +P++   Y+LLS +Y++  +W +   VR  M E GL+K P  S IE+
Sbjct: 598 GAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEI 655



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 119/395 (30%), Positives = 208/395 (52%), Gaps = 10/395 (2%)

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D   ++ +L AC   K ++ G++IH+ V    L  +I     L+++Y+ C   + A+ VF
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVF 61

Query: 271 DRMSER-DVVTWTSMINGYALNGDVRNALGLFQ-LMQFEGVRPNSLTIGSLLSACSSLYY 328
           D M    ++  W  ++ GY  N     AL LF+ L+ +  ++P+S T  S+L AC  LY 
Sbjct: 62  DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYK 121

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
              G+ +H   +K  L  +++V ++L+ MYAKCN  + +  +F    +K    WN +++ 
Sbjct: 122 YVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISC 181

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
              +G  ++A+E F  M     EPN  T+ + + + A L DL + M IH  LI  GFL  
Sbjct: 182 YYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLD 241

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             +S+ L+D+Y KCG LE A ++F ++P   K +V W+ +I+GYG+ G   + + LFK M
Sbjct: 242 SFISSALVDMYGKCGHLEMAIEVFEQMP--KKTVVAWNSMISGYGLKGDSISCIQLFKRM 299

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRA 566
              GV+P   T +S +  CS    L EG  +  + + N     ++D +  + ++DL  + 
Sbjct: 300 YNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNR---IQSDVFINSSLMDLYFKC 356

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
           G+++ A ++ + +P K     W  ++   V  G +
Sbjct: 357 GKVELAENIFKLIP-KSKVVSWNVMISGYVAEGKL 390


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/636 (36%), Positives = 359/636 (56%), Gaps = 18/636 (2%)

Query: 32  TKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGAS 91
           T+QLH   I +    ++ R  L     + SN  I         SFL  +    Y +N   
Sbjct: 59  TQQLHGHFIKTSSNCSY-RVPLAALESYSSNAAI--------HSFLITS----YIKNNCP 105

Query: 92  HDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNC 151
            D+ K++   +R  +   DN+  P V+KAC  +    LG  +HG V+  GF  D FV N 
Sbjct: 106 ADAAKIY-AYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNA 164

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           LI MY   G +  AR +FD +    VVSW+T+I  Y ++    EAL +   M    V+P 
Sbjct: 165 LIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPS 224

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELVA-GGRLGKN-IAAWNALVDMYVKCGSVNEARLV 269
              ++S+      L ++++G+ +H  V   G+ GK+ +    AL+DMYVKC ++  AR V
Sbjct: 225 EIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRV 284

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           FD +S+  +++WT+MI  Y    ++   + LF  M  EG+ PN +T+ SL+  C +   L
Sbjct: 285 FDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGAL 344

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           + G+ LHA+T++      +++ TA IDMY KC  V+ +  VF     K  + W+A+++  
Sbjct: 345 ELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSY 404

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
             N    +A ++F  M    + PN+ T+ SLL   A    L+    IH Y+ + G    +
Sbjct: 405 AQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDM 464

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            + T  +D+Y+ CG +++AH++F+E    D+DI +W+ +I+G+ MHGHGE A+ LF+EM 
Sbjct: 465 ILKTSFVDMYANCGDIDTAHRLFAEA--TDRDISMWNAMISGFAMHGHGEAALELFEEME 522

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
             GV PN++TF  ALHACSH GLL EG  LF+ M+       + +HY C+VDLLGRAG L
Sbjct: 523 ALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLL 582

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629
           DEA++LI++MP++P  AV+G+ L AC +H N++LGE AAK    LEP   G  VL+S +Y
Sbjct: 583 DEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIY 642

Query: 630 SAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           ++  RW D   +R  M ++G+ K P  S IEV  +L
Sbjct: 643 ASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLL 678


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 238/662 (35%), Positives = 372/662 (56%), Gaps = 16/662 (2%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGP-----LFTHLRSSLVRAYGHVSNVRI 65
           K   L++KL++   +  SI    QLH+  +  G      + T L     R Y  + +   
Sbjct: 2   KRRDLLVKLLETCCSKISIT---QLHSQCLKVGLALDSFVVTKLNVLYAR-YASLCHAHK 57

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR--LGEYNPDNYTYPIVIKACTD 123
           LF+E   ++ +L+N +++ Y   G   ++L +F  M    + E  PDNYT  I +K+C+ 
Sbjct: 58  LFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSG 117

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
           L   +LG  +HG  L    D D FVG+ LI +Y   G++  A KVF    +  VV W ++
Sbjct: 118 LQKLELGKMIHG-FLKKKIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSI 176

Query: 184 ISGYFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           I+GY +N   + AL  F  M+    V PD  ++VS   AC  L +  +GR +H  V    
Sbjct: 177 ITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRG 236

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
               +   N+++++Y K GS+  A  +F  M  +D+++W+SM+  YA NG   NAL LF 
Sbjct: 237 FDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFN 296

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            M  + +  N +T+ S L AC+S   L+ G+ +H   +    E ++ V TAL+DMY KC 
Sbjct: 297 EMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCF 356

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
             + + ++F R  KK  V W  + +G    G+A K++ +F  ML     P+   L  +L 
Sbjct: 357 SPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILA 416

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A + L  +QQA+ +H ++ + GF +   +   LI++Y+KC S+++A+K+F    ++  D+
Sbjct: 417 ASSELGIVQQALCLHAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKVFK--GLRHTDV 474

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMV-QSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           V WS IIA YG HG GE A+ L  +M   S V+PN+VTF S L ACSH GL++EG+ +F+
Sbjct: 475 VTWSSIIAAYGFHGQGEEALKLSHQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFH 534

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            M+  +Q     +HY  +VDLLGR G LD+A D+I  MP++    VWGALLGAC IH N+
Sbjct: 535 VMVNEYQLMPNIEHYGIMVDLLGRMGELDKALDMINNMPMQAGPHVWGALLGACRIHQNI 594

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           ++GE+AA  LF L+P + G Y LLS +Y   + W DA  +R ++ E  L+K    S++E+
Sbjct: 595 KIGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRLKKIVGQSMVEI 654

Query: 662 RN 663
           +N
Sbjct: 655 KN 656


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/647 (35%), Positives = 362/647 (55%), Gaps = 21/647 (3%)

Query: 33  KQLHAFIITSGPLF-----------THLRSSLVRAY---GHVSNVRILFDEMSERSSF-L 77
           K +H + + SG L+             L S LV  Y   G +++ R +FD MS + +  +
Sbjct: 325 KAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHV 384

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N +M  YA+ G   +SL +F+ M  LG   PD +    ++K  T L+  + G+  HG +
Sbjct: 385 WNLIMGGYAKVGEFEESLSLFVQMHELG-IAPDEHAISCLLKCITCLSCARDGLVAHGYI 443

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           +  GF     V N LI+ Y     +  A  VF+ M     +SWN++ISG   N    EA+
Sbjct: 444 VKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAI 503

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-VAGGRLGKNIAAWNALVDM 256
            +F  M   G E D  +++SVLPAC   +    GR++H   V  G +G+   A NAL+DM
Sbjct: 504 ELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLA-NALLDM 562

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y  C        +F  M +++VV+WT+MI  Y   G      GL Q M  +G+RP+   +
Sbjct: 563 YSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAV 622

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
            S L A +    LK+G+S+H +TI+  +E  + V  AL++MY KC  V+ +  +F R + 
Sbjct: 623 TSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTN 682

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           K  + WN ++ G   N    ++  LF  ML++   PN  T+  +LPA A ++ L++   I
Sbjct: 683 KDVISWNTLIGGYSRNNFPNESFSLFSDMLLQF-RPNAVTMTCILPAAASISSLERGREI 741

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H Y +R GFL     S  L+D+Y KCG+L  A  +F  +    K+++ W+++IAGYGMHG
Sbjct: 742 HAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRL--TKKNLISWTIMIAGYGMHG 799

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
            G+ A++LF++M  SG++P+  +F++ L+AC H GL  EG   F  M + ++   +  HY
Sbjct: 800 FGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHY 859

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
           TCIVDLL R G L EA + I +MP++P  ++W +LL  C IH NV+L E  A  +F+LEP
Sbjct: 860 TCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEP 919

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           EN G YVLL+ +Y+   RW+  + +++ +  +GLR+   +S IEVR+
Sbjct: 920 ENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRS 966



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 149/499 (29%), Positives = 254/499 (50%), Gaps = 15/499 (3%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G + +   +FD M  R +  +N+++     NG    ++ +F  M   G     + T   V
Sbjct: 253 GRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGT-EISSVTVLSV 311

Query: 118 IKACTDLAWRKLGIALHGRV----LITGFDM------DTFVGNCLIAMYMNFGEVKAARK 167
           + AC  L +  +G A+HG      L+ G D       D  +G+ L+ MY+  G++ +AR+
Sbjct: 312 LPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARR 371

Query: 168 VFDAMWEHSVVS-WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           VFDAM     V  WN ++ GY K    +E+L +F  M + G+ PD  ++  +L     L 
Sbjct: 372 VFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLS 431

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
               G + H  +     G   A  NAL+  Y K   + +A LVF+RM  +D ++W S+I+
Sbjct: 432 CARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVIS 491

Query: 287 GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346
           G + NG    A+ LF  M  +G   +S+T+ S+L AC+   Y   GR +H +++K  L  
Sbjct: 492 GCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIG 551

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
           E  +  AL+DMY+ C+  + + Q+F    +K  V W A++   +  GL  K   L ++M+
Sbjct: 552 ETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMV 611

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
           ++ + P+   + S L A+A    L+Q  ++H Y IR G   ++ V+  L+++Y KC ++E
Sbjct: 612 LDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVE 671

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
            A  IF    + +KD++ W+ +I GY  +     + SLF +M+    +PN VT T  L A
Sbjct: 672 EARLIFDR--VTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPA 728

Query: 527 CSHGGLLDEGLDLFNFMLE 545
            +    L+ G ++  + L 
Sbjct: 729 AASISSLERGREIHAYALR 747



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 154/533 (28%), Positives = 244/533 (45%), Gaps = 55/533 (10%)

Query: 100 GMLRL--GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDM------DTFVGNC 151
           G LRL   +   D  +Y +V++ C +   R L  A     LI            + +G  
Sbjct: 84  GALRLLGSDGGVDVRSYCMVVQLCGEE--RSLEAAKRAHALIRASSAAATGGKGSVLGKR 141

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHS--VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           L+  Y+  G++  AR VFD M   +  V  W +L+S Y K    +EA+ +F  M   GV 
Sbjct: 142 LVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVS 201

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PD  +V  VL     L  +  G +IH L+    LG+  A  NAL+ +Y +CG + +A  V
Sbjct: 202 PDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARV 261

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           FD M  RD ++W SMI G   NG    A+ LF  M  +G   +S+T+ S+L AC+ L Y 
Sbjct: 262 FDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYG 321

Query: 330 KRGRSLHAWTIKQNLEC----------EVIVETALIDMYAKCNLVKLSFQVF-ARTSKKK 378
             G+++H +++K  L            +  + + L+ MY KC  +  + +VF A +SK  
Sbjct: 322 LIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGN 381

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
              WN I+ G    G   +++ LF QM    + P++  ++ LL     L+  +  +  H 
Sbjct: 382 VHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHG 441

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           Y+++ GF +   V   LI  Y+K   +  A  +F+ +P   +D + W+ +I+G   +G  
Sbjct: 442 YIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMP--RQDTISWNSVISGCSSNGLN 499

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGGLLDEGL----DLFNFM 543
             A+ LF  M   G + + VT  S L AC+           HG  +  GL     L N +
Sbjct: 500 SEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANAL 559

Query: 544 LENHQTCSRADHYTCIVDLLG---------------RAGRLDEAYDLIRTMPL 581
           L+ +  CS       I   +G               RAG  D+   L++ M L
Sbjct: 560 LDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVL 612


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/609 (35%), Positives = 346/609 (56%), Gaps = 4/609 (0%)

Query: 56  AYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
           A G +      F  ++   +FL+N +++ +A      D+L  +  ML  G   PD +T+P
Sbjct: 66  AAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGA-RPDRFTFP 124

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           +V+K C        G A H  V+  G   D +  N L+A+Y   G V  A +VFD M   
Sbjct: 125 VVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPAR 184

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMI 234
            +VSWNT++ GY  N     AL  F  M  +  V  D   V++ L AC     + +GR I
Sbjct: 185 DIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALALGREI 244

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H       L +++    +LVDMY KCG+V  A  VF +M  R VVTW  MI GYALN   
Sbjct: 245 HGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERP 304

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
            +A   F  M+ +G +   +T  +LL+AC+       GRS+HA+ ++++    V++ETAL
Sbjct: 305 VDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETAL 364

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           ++MY K   V+ S ++F + + K  V WN ++A  ++  + ++A+ LF ++L + + P+ 
Sbjct: 365 LEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDY 424

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
            T+ +++PA+ +L  ++Q   +H Y+++ G+     +   ++ +Y++CG++ ++ +IF +
Sbjct: 425 FTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDK 484

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
           +P   KD++ W+ II GY +HG G+ A+ +F EM  SG++PNE TF S L ACS  GL  
Sbjct: 485 MP--GKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSVSGLEA 542

Query: 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           EG   FN M + +    + +HY C+ DLLGRAG L E    I  MP+ PT  +WG+LL A
Sbjct: 543 EGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFIENMPIAPTSRIWGSLLTA 602

Query: 595 CVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP 654
                ++++ E AA+ +F+LE  N G YV+LS +Y+   RW+D E +R +M EKGLR+  
Sbjct: 603 SRNKNDIDIAEYAAERIFQLEHNNTGCYVVLSSMYADAGRWEDVERIRSLMKEKGLRRTE 662

Query: 655 AHSLIEVRN 663
           A SL+E+ N
Sbjct: 663 ARSLVELNN 671



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 135/465 (29%), Positives = 223/465 (47%), Gaps = 8/465 (1%)

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           LI  ++  G +  A   F  +        N +I G+       +AL  +  ML +G  PD
Sbjct: 60  LILSHVAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPD 119

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFD 271
             +   VL  C     +  GR  H  V    LG ++   N+LV +Y K G V +A  VFD
Sbjct: 120 RFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFD 179

Query: 272 RMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLK 330
            M  RD+V+W +M++GY  NG    AL  F+ M     V  +S+ + + L+AC     L 
Sbjct: 180 GMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALA 239

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
            GR +H + I+  LE +V V T+L+DMY KC  V  +  VFA+   +  V WN ++ G  
Sbjct: 240 LGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYA 299

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
            N     A + F QM V+  +    T  +LL A A         ++H Y++R  FL  V 
Sbjct: 300 LNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHVV 359

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           + T L+++Y K G +ES+ KIF +  I DK +V W+ +IA Y      + A++LF E++ 
Sbjct: 360 LETALLEMYGKVGKVESSEKIFGQ--ITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLN 417

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
             + P+  T T+ + A    G + +   + +++++     S       ++ +  R G + 
Sbjct: 418 QPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLI-MNAVMHMYARCGNIV 476

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
            + ++   MP K   + W  ++    IHG    G++A +   E++
Sbjct: 477 ASREIFDKMPGKDVIS-WNTIIIGYAIHGQ---GKIALEMFDEMK 517



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 123/492 (25%), Positives = 224/492 (45%), Gaps = 12/492 (2%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GH 59
           P   T P    +V+K   +  A   +   +  HA +I  G     +  +SLV  Y   G 
Sbjct: 118 PDRFTFP----VVLKCCARAGA---LGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGL 170

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           V +   +FD M  R    +NT++  Y  NG    +L  F  M    +   D+      + 
Sbjct: 171 VGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALA 230

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           AC   +   LG  +HG  +  G + D  VG  L+ MY   G V  A  VF  M   +VV+
Sbjct: 231 ACCLESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVT 290

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WN +I GY  N    +A   F  M   G + +  + +++L AC   +    GR +H  V 
Sbjct: 291 WNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVV 350

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
                 ++    AL++MY K G V  +  +F +++++ +V+W +MI  Y      + A+ 
Sbjct: 351 RRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIA 410

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           LF  +  + + P+  T+ +++ A   L  +++ + +H++ +K       ++  A++ MYA
Sbjct: 411 LFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYA 470

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           +C  +  S ++F +   K  + WN I+ G   +G  + A+E+F +M    +EPN++T  S
Sbjct: 471 RCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVS 530

Query: 420 LLPAYAILA-DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           +L A ++   + +     +     YG +  +E    + D+  + G L    +    +PI 
Sbjct: 531 VLTACSVSGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFIENMPIA 590

Query: 479 DKDIVVWSVIIA 490
               +  S++ A
Sbjct: 591 PTSRIWGSLLTA 602



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 164/344 (47%), Gaps = 5/344 (1%)

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           +L+  +V  G ++EA   F  ++         MI G+A      +AL  ++ M   G RP
Sbjct: 59  SLILSHVAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARP 118

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +  T   +L  C+    L  GR+ HA  IK  L  +V    +L+ +YAK  LV  + +VF
Sbjct: 119 DRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVF 178

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT-LNSLLPAYAILADL 430
                +  V WN ++ G V NG+   A+  FR+M   +   +D+  + + L A  + + L
Sbjct: 179 DGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESAL 238

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
                IH Y IR+G    V+V T L+D+Y KCG++  A  +F+++P+  + +V W+ +I 
Sbjct: 239 ALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPL--RTVVTWNCMIG 296

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           GY ++     A   F +M   G Q   VT  + L AC+       G  +  +++  H   
Sbjct: 297 GYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRH-FL 355

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
                 T ++++ G+ G+++ +  +   +  K T   W  ++ A
Sbjct: 356 PHVVLETALLEMYGKVGKVESSEKIFGQITDK-TLVSWNNMIAA 398


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/633 (35%), Positives = 361/633 (57%), Gaps = 11/633 (1%)

Query: 34  QLHAFIITSGPLF-----THLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           Q HA  I +G  F     T L   L   +    + R LF  + +   FL+N +++ ++ N
Sbjct: 30  QTHAQFILNGYRFDLATLTKLTQKLFD-FSATRHARALFFSVPKPDIFLFNVLVRGFSLN 88

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
            +   S+ ++  + R    +PDN+TY   + AC++    K  + LH   +I G+  + FV
Sbjct: 89  DSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSN---DKHLMLLHAHSIIDGYGSNVFV 145

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           G+ L+ +Y  F  V  ARKVFD M E   V WNT+I+G  KN    +++ +F  M+  GV
Sbjct: 146 GSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGV 205

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
             D ++V +VLPA   L+E+++G  I  L      G        L+ +Y KCG VN ARL
Sbjct: 206 RVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARL 265

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +F R++  D++ + +MI+G+  NG    ++ LF+ + F G R +S TI  L+   S   +
Sbjct: 266 LFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGH 325

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L    S+H + +K  +     V TA   +Y K N + L+  +F  + +K  V WNA+++G
Sbjct: 326 LHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISG 385

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
              NG    A+ LF++M+     PN  T+ ++L A A L  L     +H  +        
Sbjct: 386 YTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPN 445

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           + VST L+D+Y+KCG++  A ++F  +   +K+ V W+ +I GYG+HG+G  A+ L+ EM
Sbjct: 446 IYVSTALVDMYAKCGNISEAWQLFDSM--SEKNTVTWNTMIFGYGLHGYGHEALKLYNEM 503

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
           +  G  P+ VTF S L+ACSH GL+ EG ++F+ M+  ++     +HY C+VD+LGR+G+
Sbjct: 504 LHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQ 563

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           L++A + I+ MP++P  AVWG LLGAC+IH + ++  +A++ LFEL+P + G YVLLS +
Sbjct: 564 LEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNI 623

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           YS  R +  A ++R V+ ++ L K+P  +LIEV
Sbjct: 624 YSVERNFPKAASIRQVVKKRKLAKSPGCTLIEV 656


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/660 (35%), Positives = 375/660 (56%), Gaps = 14/660 (2%)

Query: 13  THLVIKLVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY--GHV-SNVRIL 66
           T  ++ L++    +KS+   K +H  ++T G    +F  L  +L+  Y   H+  + + +
Sbjct: 3   TRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIF--LCKTLINQYLSCHLYDHAKCV 60

Query: 67  FDEMSERSSF-LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           FD M       L+N +M  Y +N    ++L++F  +L      PD+YTYP V KAC  L 
Sbjct: 61  FDNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLH 120

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
              LG  +H  ++ TG  MD  VG+ L+ MY      + A  +F+ M E  V  WNT+IS
Sbjct: 121 RYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVIS 180

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE-LVAGGRLG 244
            Y+++   K+AL  F  M + G EP+  ++ + + +C  L ++  G  IHE L+  G L 
Sbjct: 181 CYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLL 240

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            +  + +ALVDMY KCG +  A  +F++M ++ VV W SMI+GY L GD+ + + LF+ M
Sbjct: 241 DSFIS-SALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRM 299

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
             EGV+P   T+ SL+  CS    L  G+ +H +TI+  ++ +V V ++L+D+Y KC  V
Sbjct: 300 YNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKV 359

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
           +L+ ++F    K K V WN +++G V  G   +A+ LF +M    VE +  T  S+L A 
Sbjct: 360 ELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTAC 419

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           + LA L++   IH  +I     +   V   L+D+Y+KCG+++ A  +F  +P   +D+V 
Sbjct: 420 SQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP--KRDLVS 477

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+ +I  YG HGH   A+ LF EM+QS V+P+ V F + L AC H GL+DEG   FN M+
Sbjct: 478 WTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMI 537

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP-LKPTHAVWGALLGACVIHGNVEL 603
             +    R +HY+C++DLLGRAGRL EAY++++  P ++    +   L  AC +H N++L
Sbjct: 538 NVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDL 597

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           G   A+ L + +P++   Y+LLS +Y++  +W +   VR  M E GL+K P  S IE+  
Sbjct: 598 GAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQ 657



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 202/395 (51%), Gaps = 10/395 (2%)

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D   ++ +L AC   K ++ G++IH+ V    L  +I     L++ Y+ C   + A+ VF
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVF 61

Query: 271 DRMSER-DVVTWTSMINGYALNGDVRNALGLFQ-LMQFEGVRPNSLTIGSLLSACSSLYY 328
           D M    ++  W  ++ GY  N     AL LF+ L+ +  ++P+S T  S+  AC  L+ 
Sbjct: 62  DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHR 121

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
              G+ +H   IK  L  +++V ++L+ MY KCN  + +  +F    +K    WN +++ 
Sbjct: 122 YVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISC 181

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
              +G  + A+E F  M     EPN  T+ + + + A L DL + M IH  LI  GFL  
Sbjct: 182 YYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLD 241

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             +S+ L+D+Y KCG LE A +IF ++P   K +V W+ +I+GYG+ G   + + LFK M
Sbjct: 242 SFISSALVDMYGKCGHLEMAIEIFEQMP--KKTVVAWNSMISGYGLKGDIISCIQLFKRM 299

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRA 566
              GV+P   T +S +  CS    L EG  +  + + N     + D +  + ++DL  + 
Sbjct: 300 YNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNR---IQPDVFVNSSLMDLYFKC 356

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
           G+++ A  + + +P K     W  ++   V  G +
Sbjct: 357 GKVELAEKIFKLIP-KSKVVSWNVMISGYVAEGKL 390


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/639 (34%), Positives = 352/639 (55%), Gaps = 7/639 (1%)

Query: 33  KQLHAFII----TSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +QLH FI+    +S     +   +L   +G++     +F +M  R    YN+++   AQ 
Sbjct: 233 EQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQR 292

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G S  +L++F  M +L    PD  T   ++ AC  +     G  LH  V+  G   D  +
Sbjct: 293 GFSDRALQLFEKM-QLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLII 351

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
              L+ +Y+   +++ A + F      +VV WN ++  Y +     E+  +F  M   G+
Sbjct: 352 EGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGL 411

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P+  +  S+L  C  L  +++G  IH  V       N+   + L+DMY K G ++ AR 
Sbjct: 412 MPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARG 471

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +  R+ E DVV+WT+MI GY  +     AL LFQ M+ +G+R +++   S +SAC+ +  
Sbjct: 472 ILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQA 531

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L +G+ +HA +       ++ +  AL+ +YA+C   + ++  F +   K  + WNA+++G
Sbjct: 532 LNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISG 591

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
              +G   +A+++F QM    VE N  T  S + A A  A+++Q   IH  +I+ G+ S 
Sbjct: 592 FAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSE 651

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
            E S  LI +YSKCGS+E A + F E+P  +K++V W+ +I GY  HG+G  AVSLF+EM
Sbjct: 652 TEASNVLITLYSKCGSIEDAKREFFEMP--EKNVVSWNAMITGYSQHGYGSEAVSLFEEM 709

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
            Q G+ PN VTF   L ACSH GL++EGL  F  M + H    + +HY C+VDLLGRA  
Sbjct: 710 KQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAAL 769

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           L  A + I  MP++P   +W  LL AC +H N+E+GE AA+ L ELEPE+   YVLLS +
Sbjct: 770 LCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNM 829

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           Y+   +W   +  R +M ++G++K P  S IEV+N + A
Sbjct: 830 YAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHA 868



 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 165/572 (28%), Positives = 286/572 (50%), Gaps = 9/572 (1%)

Query: 32  TKQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           T+Q+HA II  G    PL  +    L    GHV   +++F+ +  + S  +  ++   +Q
Sbjct: 131 TEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQ 190

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NG   +++ +F  M +     P  Y +  V+ ACT +   KLG  LHG ++  G   +TF
Sbjct: 191 NGREDEAILLFCQMHK-SAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETF 249

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           V N L+ +Y  +G + AA ++F  M     +S+N+LISG  +  ++  AL +F+ M    
Sbjct: 250 VCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDC 309

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           ++PDC +V S+L AC  +     G+ +H  V    +  ++    +L+D+YVKC  +  A 
Sbjct: 310 MKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAH 369

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
             F      +VV W  M+  Y   G++  +  +F  MQ EG+ PN  T  S+L  C+SL 
Sbjct: 370 EYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLG 429

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L  G  +H   IK   +  V V + LIDMYAK   +  +  +  R  ++  V W A++A
Sbjct: 430 ALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIA 489

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G   + L  +A++LF++M  + +  ++   +S + A A +  L Q   IH      G+  
Sbjct: 490 GYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSE 549

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            + +   L+ +Y++CG  + A+  F +I  KD   + W+ +I+G+   GH E A+ +F +
Sbjct: 550 DLSIGNALVSLYARCGRAQDAYLAFEKIDAKDN--ISWNALISGFAQSGHCEEALQVFSQ 607

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M Q+GV+ N  TF SA+ A ++   + +G  +   M++     S  +    ++ L  + G
Sbjct: 608 MNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYD-SETEASNVLITLYSKCG 666

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            +++A      MP K     W A++     HG
Sbjct: 667 SIEDAKREFFEMPEKNV-VSWNAMITGYSQHG 697



 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 176/584 (30%), Positives = 296/584 (50%), Gaps = 14/584 (2%)

Query: 26  TKSIAGTKQLHAFIITSGPLFTHLRSS----LVRAYGHVSNVRILFDEMSERSSFLYNTV 81
           + S+   K+LHA I  SG     +  S    +  A+G V N   LFD++   +   +N V
Sbjct: 23  SGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKV 82

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT-DLAWRKLGIALHGRVLIT 140
           +        +   L +F  M+      PD  T+  V++AC+   A  ++   +H +++  
Sbjct: 83  ISGLLAKKLASQVLGLFSLMIT-ENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHH 141

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           GF     V N LI +Y   G V  A+ VF+ ++    VSW  +ISG  +N    EA+++F
Sbjct: 142 GFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLF 201

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
             M KS V P      SVL AC  ++  ++G  +H  +    L       NALV +Y + 
Sbjct: 202 CQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRW 261

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           G++  A  +F +M  RD +++ S+I+G A  G    AL LF+ MQ + ++P+ +T+ SLL
Sbjct: 262 GNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLL 321

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           SAC+S+    +G+ LH++ IK  +  ++I+E +L+D+Y KC  ++ + + F  T  +  V
Sbjct: 322 SACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVV 381

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            WN +L      G   ++  +F QM +E + PN  T  S+L     L  L     IH  +
Sbjct: 382 LWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQV 441

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           I+ GF   V V + LID+Y+K G L++A  I     ++++D+V W+ +IAGY  H     
Sbjct: 442 IKSGFQFNVYVCSVLIDMYAKHGELDTARGILQR--LREEDVVSWTAMIAGYTQHDLFAE 499

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF--NFMLENHQTCSRADHYTC 558
           A+ LF+EM   G++ + + F+SA+ AC+    L++G  +   +++    +  S  +    
Sbjct: 500 ALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGN---A 556

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           +V L  R GR  +AY     +  K   + W AL+      G+ E
Sbjct: 557 LVSLYARCGRAQDAYLAFEKIDAKDNIS-WNALISGFAQSGHCE 599



 Score =  244 bits (624), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 145/488 (29%), Positives = 260/488 (53%), Gaps = 12/488 (2%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           LH R+  +GFD +  +G+ LI +Y+  GEV  A K+FD +   +V  WN +ISG      
Sbjct: 32  LHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKL 91

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPAC-GYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
           A + L +F  M+   V PD ++  SVL AC G     ++   IH  +     G +    N
Sbjct: 92  ASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCN 151

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            L+D+Y K G V+ A+LVF+R+  +D V+W +MI+G + NG    A+ LF  M    V P
Sbjct: 152 PLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIP 211

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
                 S+LSAC+ +   K G  LH + +K  L  E  V  AL+ +Y++   +  + Q+F
Sbjct: 212 TPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIF 271

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
           ++  ++  + +N++++G    G + +A++LF +M ++ ++P+  T+ SLL A A +    
Sbjct: 272 SKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGY 331

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           +   +H Y+I+ G  S + +   L+D+Y KC  +E+AH+ F  +  + +++V+W+V++  
Sbjct: 332 KGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYF--LTTETENVVLWNVMLVA 389

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           YG  G+   +  +F +M   G+ PN+ T+ S L  C+  G LD G  +   ++   ++  
Sbjct: 390 YGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVI---KSGF 446

Query: 552 RADHYTC--IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
           + + Y C  ++D+  + G LD A  +++ +  +     W A++     H   +L   A K
Sbjct: 447 QFNVYVCSVLIDMYAKHGELDTARGILQRLREEDV-VSWTAMIAGYTQH---DLFAEALK 502

Query: 610 WLFELEPE 617
              E+E +
Sbjct: 503 LFQEMENQ 510



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 143/326 (43%), Gaps = 36/326 (11%)

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M+  G+R N  T   L   C +   L   + LHA   K   + E ++ + LID+Y     
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           V  + ++F          WN +++G +   LA + + LF  M+ E V P+++T  S+L A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 424 YA-ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
            +   A  Q    IH  +I +GF S   V   LID+YSK G ++ A  +F  + +KD   
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDS-- 178

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGG 531
           V W  +I+G   +G  + A+ LF +M +S V P    F+S L AC+           HG 
Sbjct: 179 VSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGF 238

Query: 532 LLDEGLDLFNF--------------MLENHQTCS---RADH--YTCIVDLLGRAGRLDEA 572
           ++  GL    F              ++   Q  S   R D   Y  ++  L + G  D A
Sbjct: 239 IVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRA 298

Query: 573 YDLIRTMPL---KPTHAVWGALLGAC 595
             L   M L   KP      +LL AC
Sbjct: 299 LQLFEKMQLDCMKPDCVTVASLLSAC 324



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 5/117 (4%)

Query: 20  VQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSS 75
           V   A T +I   KQ+HA +I +G    T   + L+  Y   G + + +  F EM E++ 
Sbjct: 624 VSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNV 683

Query: 76  FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
             +N ++  Y+Q+G   +++ +F  M +LG   P++ T+  V+ AC+ +     G++
Sbjct: 684 VSWNAMITGYSQHGYGSEAVSLFEEMKQLG-LMPNHVTFVGVLSACSHVGLVNEGLS 739


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/548 (39%), Positives = 319/548 (58%), Gaps = 38/548 (6%)

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF-DWMLKSGVEP 210
            I +Y N G+++ AR +FD + +  + +W  LIS   K+  + EA+  + D+  K+ VEP
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D   ++SV  AC  L+++   + +HE         ++   NAL+DMY KC     ARLVF
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVF 136

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
           + M  RDV++WTSM + Y   G +R ALG F+ M   G RPNS+T+ S+L AC+ L  LK
Sbjct: 137 EGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLK 196

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN------- 383
            GR +H + ++  +   V V +AL++MYA C  ++ +  VF   S++ TV WN       
Sbjct: 197 SGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYF 256

Query: 384 ----------------------------AILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
                                       A++ GC+ NG   KA+E+  +M     +PN  
Sbjct: 257 LNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQI 316

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           T+ S+LPA   L  L+    IH Y+ R+ F   +  +T L+ +Y+KCG LE + ++FS +
Sbjct: 317 TITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMM 376

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
               +D V W+ +I    MHG+GE A+ LF+EMV SGV+PN VTFT  L  CSH  L+DE
Sbjct: 377 --TKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDE 434

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           GL +F+ M  +H     ADH++C+VD+L RAGRL+EAY+ I+ MP++PT   WGALLG C
Sbjct: 435 GLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGC 494

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
            ++ NVELG +AA  LFE+E +NPGNYVLLS +  + + W +A   R +M ++G+ K P 
Sbjct: 495 RVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPG 554

Query: 656 HSLIEVRN 663
            S I+VRN
Sbjct: 555 CSWIQVRN 562



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 138/483 (28%), Positives = 228/483 (47%), Gaps = 40/483 (8%)

Query: 48  HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL 104
           HL    ++ Y   G +   R LFD++ +     +  ++    ++G S ++++ +      
Sbjct: 12  HLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHK 71

Query: 105 GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA 164
               PD      V KAC  L        +H   +  GF  D  +GN LI MY      + 
Sbjct: 72  NCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEG 131

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
           AR VF+ M    V+SW ++ S Y      +EAL  F  M  +G  P+  +V S+LPAC  
Sbjct: 132 ARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTD 191

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           LK+++ GR +H  V    +G N+   +ALV+MY  C S+ +A+LVFD MS RD V+W  +
Sbjct: 192 LKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVL 251

Query: 285 INGYALNGDVRNALGLFQLMQFEGV----------------------------------- 309
           I  Y LN +    L +F  M  EGV                                   
Sbjct: 252 ITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGF 311

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
           +PN +TI S+L AC++L  L+ G+ +H +  +     ++   TAL+ MYAKC  ++LS +
Sbjct: 312 KPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRR 371

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           VF+  +K+ TV WN ++     +G   +A+ LFR+M+   V PN  T   +L   +    
Sbjct: 372 VFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRL 431

Query: 430 LQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
           + + + I   + R +      +  + ++D+ S+ G LE A++   ++PI +     W  +
Sbjct: 432 VDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPI-EPTAGAWGAL 490

Query: 489 IAG 491
           + G
Sbjct: 491 LGG 493



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 153/360 (42%), Gaps = 54/360 (15%)

Query: 27  KSIAGTKQLHAFIITSG---PLFTHLRSSLVRAYGHVSNVR---ILFDEMSERSSFLYNT 80
           K +   +++H F++ +G    +F  + S+LV  Y    ++R   ++FD MS R +  +N 
Sbjct: 193 KDLKSGREVHGFVVRNGMGGNVF--VSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNV 250

Query: 81  VMKMY-----------------------------------AQNGASHDSLKMFLGMLRLG 105
           ++  Y                                    QNG +  +L++   M   G
Sbjct: 251 LITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSG 310

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
            + P+  T   V+ ACT+L   + G  +HG +    F  D      L+ MY   G+++ +
Sbjct: 311 -FKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELS 369

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           R+VF  M +   VSWNT+I     +   +EAL++F  M+ SGV P+  +   VL  C + 
Sbjct: 370 RRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHS 429

Query: 226 KEIEMGRMIHELVAGGR-LGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTS 283
           + ++ G +I + ++    +  +    + +VD+  + G + EA     +M  E     W +
Sbjct: 430 RLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGA 489

Query: 284 MINGYALNGDVR-NALGLFQLMQFEGVRP-------NSLTIGSLLSACSSLYYLKRGRSL 335
           ++ G  +  +V    +   +L + E   P       N L    L S  S    L R R +
Sbjct: 490 LLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGV 549


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/606 (36%), Positives = 355/606 (58%), Gaps = 10/606 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G   + R LF  + +   FL+N ++K ++ +  +  S+  +  +L+    +PDN+TY   
Sbjct: 54  GATRHARALFFSVPKPDIFLFNVLIKGFSFSPDA-SSISFYTHLLKNTTLSPDNFTYAFA 112

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           I A  D     LG+ LH   ++ GFD + FV + L+ +Y  F  V  ARKVFD M +   
Sbjct: 113 ISASPD---DNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDT 169

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V WNT+I+G  +N    +++ VF  M+  GV  D  +V +VLPA   ++E+++G  I  L
Sbjct: 170 VLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCL 229

Query: 238 VAGGRLGKNIAAW--NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
               +LG +   +    L+ ++ KC  V+ ARL+F  + + D+V++ ++I+G++ NG+  
Sbjct: 230 AL--KLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETE 287

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            A+  F+ +   G R +S T+  L+   S   +L     +  + +K     +  V TAL 
Sbjct: 288 CAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALT 347

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
            +Y++ N + L+ Q+F  +S+K    WNA+++G   +GL   A+ LF++M+     PN  
Sbjct: 348 TIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPV 407

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           T+ S+L A A L  L    ++H  +        + VST LID+Y+KCG++  A ++F   
Sbjct: 408 TITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFD-- 465

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
              +K+ V W+ +I GYG+HG+G+ A+ LF EM+  G QP+ VTF S L+ACSH GL+ E
Sbjct: 466 LTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVRE 525

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           G ++F+ M+  ++    A+HY C+VD+LGRAG+L++A + IR MP++P  AVWG LLGAC
Sbjct: 526 GDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGAC 585

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
           +IH +  L  VA++ LFEL+P N G YVLLS +YS  R +  A +VR+ + ++ L K P 
Sbjct: 586 MIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPG 645

Query: 656 HSLIEV 661
            +LIEV
Sbjct: 646 CTLIEV 651



 Score =  210 bits (534), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 144/468 (30%), Positives = 237/468 (50%), Gaps = 11/468 (2%)

Query: 35  LHAFIITSG---PLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQN 88
           LHA  +  G    LF  + S+LV  Y   S V   R +FD+M +R + L+NT++    +N
Sbjct: 125 LHAHAVVDGFDSNLF--VASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRN 182

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
               DS+++F  M+  G    D+ T   V+ A  ++   K+G+ +    L  GF  D +V
Sbjct: 183 CCYDDSVQVFKDMVAQG-VRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYV 241

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
              LI+++    +V  AR +F  + +  +VS+N LISG+  N   + A+  F  +L SG 
Sbjct: 242 LTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQ 301

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
               +++V ++P       + +   I             +   AL  +Y +   ++ AR 
Sbjct: 302 RVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQ 361

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +FD  SE+ V  W +MI+GYA +G    A+ LFQ M      PN +TI S+LSAC+ L  
Sbjct: 362 LFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGA 421

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L  G+S+H     +NLE  + V TALIDMYAKC  +  + Q+F  TS+K TV WN ++ G
Sbjct: 422 LSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFG 481

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI-HCYLIRYGFLS 447
              +G   +A++LF +ML    +P+  T  S+L A +    +++   I H  + +Y    
Sbjct: 482 YGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEP 541

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           + E    ++DI  + G LE A +   ++P+ +    VW  ++    +H
Sbjct: 542 LAEHYACMVDILGRAGQLEKALEFIRKMPV-EPGPAVWGTLLGACMIH 588


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/652 (35%), Positives = 363/652 (55%), Gaps = 11/652 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG--PLFTHLRSSLVRAYGHVSNVR---ILFDEMSER 73
           L+   +  +S+   K++H  ++ S   P  T L++ ++  YG   +++    +FD M ER
Sbjct: 69  LISACSYLRSLEHGKKIHDHMLKSKSHPDLT-LQNHILNMYGKCKSLKDAQKVFDAMPER 127

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           +   + +V+  Y+QNG   ++L+ +  ML+ G   PD +T+  +IKAC+ L    LG  L
Sbjct: 128 NVVSWTSVIAGYSQNGQGGNALEFYFQMLQSG-VMPDQFTFGSIIKACSSLGDIGLGRQL 186

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H  VL + F       N LI+MY     +  A  VF  M    ++SW ++I+G+ +  Y 
Sbjct: 187 HAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYE 246

Query: 194 KEALVVFDWMLKSGVE-PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            EAL  F  ML  GV  P+     SV  AC  L + E GR +H +     LG+++ A  +
Sbjct: 247 LEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCS 306

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L DMY KCG ++ AR+VF ++   D+V W ++I G+A  GD + A+  F  M+ +G+ P+
Sbjct: 307 LCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPD 366

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            +T+ SLL AC+S   L +G  +H +  K  L+ +V V   L+ MYAKC+ ++ +   F 
Sbjct: 367 EITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFE 426

Query: 373 RT-SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
                   V WNAIL  C+ +  A +   L + M +    P+  TL ++L A A    ++
Sbjct: 427 EMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIE 486

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               +HCY ++ G      V+ GLID+Y+KCGSL++AHKIF  +   + D+V WS +I G
Sbjct: 487 IGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMI--NPDVVSWSSLILG 544

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           Y   G+GE A+ LFK M +  V+PN VTF   L ACSH GL++EG  L+  M +      
Sbjct: 545 YAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAP 604

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
             +H +C+VDLL RAG L+EA   I  M   P   VW  LL AC  HGNV++G+ AA+ +
Sbjct: 605 TREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENI 664

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            +++P N   +VLL  +Y++   W+D   +R +M ++G+RK P  S IEV++
Sbjct: 665 LKIDPSNSAAHVLLCNIYASKGNWEDVARLRSLMKQRGVRKVPGQSWIEVKD 716



 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 166/481 (34%), Positives = 254/481 (52%), Gaps = 4/481 (0%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           TY  +I AC+ L   + G  +H  +L +    D  + N ++ MY     +K A+KVFDAM
Sbjct: 65  TYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAM 124

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
            E +VVSW ++I+GY +N     AL  +  ML+SGV PD  +  S++ AC  L +I +GR
Sbjct: 125 PERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGR 184

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            +H  V     G +I A NAL+ MY K   + +A  VF RM+ RD+++W SMI G++  G
Sbjct: 185 QLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLG 244

Query: 293 DVRNALGLFQLMQFEGVR-PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
               AL  F+ M  +GV  PN    GS+ SACSSL   + GR LH  +IK  L  +V   
Sbjct: 245 YELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAG 304

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
            +L DMYAKC L+  +  VF +  +   V WNAI+AG  + G A++A+  F QM  + + 
Sbjct: 305 CSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLI 364

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           P++ T+ SLL A    ++L Q M +H Y+ + G    V V   L+ +Y+KC  L  A   
Sbjct: 365 PDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFF 424

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F E+   + D+V W+ I+     H   E    L K M  S  +P+ +T T+ L A +   
Sbjct: 425 FEEMRC-NADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGASAETV 483

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
            ++ G  +  + L+    C  +     ++DL  + G L  A+ +  +M + P    W +L
Sbjct: 484 SIEIGNQVHCYALKTGLNCDTSV-TNGLIDLYAKCGSLKTAHKIFDSM-INPDVVSWSSL 541

Query: 592 L 592
           +
Sbjct: 542 I 542



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 136/429 (31%), Positives = 223/429 (51%), Gaps = 11/429 (2%)

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           S N  I+   K     EA+  F+++ K +G     ++   ++ AC YL+ +E G+ IH+ 
Sbjct: 29  SSNEYITSLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGKKIHDH 88

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +   +   ++   N +++MY KC S+ +A+ VFD M ER+VV+WTS+I GY+ NG   NA
Sbjct: 89  MLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNA 148

Query: 298 LGL-FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           L   FQ++Q  GV P+  T GS++ ACSSL  +  GR LHA  +K      +I + ALI 
Sbjct: 149 LEFYFQMLQ-SGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALIS 207

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE-VVEPNDA 415
           MY K NL+  +  VF+R + +  + W +++AG    G   +A+  F++ML + V  PN+ 
Sbjct: 208 MYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEF 267

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
              S+  A + L   +    +H   I++G    V     L D+Y+KCG L  A  +F + 
Sbjct: 268 IFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQ- 326

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
            I   D+V W+ IIAG+   G  + A++ F +M   G+ P+E+T  S L AC+    L +
Sbjct: 327 -IGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQ 385

Query: 536 GLDLFNFMLENHQTCSRADHYTC--IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
           G+ +  ++   ++     D   C  ++ +  +   L +A      M        W A+L 
Sbjct: 386 GMQVHGYI---NKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILT 442

Query: 594 ACVIHGNVE 602
           AC+ H   E
Sbjct: 443 ACMRHDQAE 451


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/664 (34%), Positives = 377/664 (56%), Gaps = 14/664 (2%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GH 59
           P  HTLP        +V+  AA  +++  + +H     +G     ++ S+L++ Y   G 
Sbjct: 139 PDAHTLPY-------VVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGL 191

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           + + R  FD M  R   L+N +M  Y + G    ++++F  M R+    P+  T    + 
Sbjct: 192 LRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNM-RVSGCEPNFATLACFLS 250

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
            C   A    G+ LH   +  G + +  V N L++MY     +  A ++F+ +    +V+
Sbjct: 251 VCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVT 310

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WN +ISG  +N    EAL +F  ML+SG  PD  ++VS+LPA   L  ++ G+ +H  + 
Sbjct: 311 WNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYII 370

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
              +  +    +ALVD+Y KC  V  AR ++D     DVV  +++I+GY LNG    AL 
Sbjct: 371 RNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQ 430

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           +F+ +  + ++PN++T+ S+L AC+S+  L  G+ +H + ++   E +  VE+AL+DMYA
Sbjct: 431 MFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYA 490

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           KC  + LS  +F++ S K  V WN++++    NG  ++A++LFRQM +E ++ N+ T++S
Sbjct: 491 KCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISS 550

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
            L A A L  +     IH  +I+    + +   + LID+Y+KCG++E A ++F  +P  D
Sbjct: 551 ALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMP--D 608

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
           K+ V W+ II+ YG HG  + +VS    M + G +P+ VTF + + AC+H GL++EGL L
Sbjct: 609 KNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQL 668

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           F  M + +    R +H+ C+VDL  R+GRLD+A   I  MP KP   +WGALL AC +H 
Sbjct: 669 FQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHR 728

Query: 600 NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           NVEL ++A++ LF+L+P N G YVL+S + +   RW     VR +M +  + K P +S +
Sbjct: 729 NVELADIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWV 788

Query: 660 EVRN 663
           +V N
Sbjct: 789 DVNN 792



 Score =  288 bits (736), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 177/582 (30%), Positives = 306/582 (52%), Gaps = 19/582 (3%)

Query: 34  QLHAFIITSGPLFTH----LRSSLVRAYGHVSNVR---ILFDEMSER---SSFLYNTVMK 83
           Q+HA  + SG L  H    L + L+  Y      R    +F  +      SS  +N +++
Sbjct: 53  QIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAGSSLPWNWLIR 112

Query: 84  MYAQNGASHDSLKMFLGM-LRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
            +   G    ++  ++ M       +PD +T P V+K+C  L    LG  +H     TG 
Sbjct: 113 GFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTARATGL 172

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
             D +VG+ LI MY + G ++ AR  FD M     V WN ++ GY K      A+ +F  
Sbjct: 173 ASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRN 232

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           M  SG EP+ A++   L  C    ++  G  +H L     L + +A  N L+ MY KC  
Sbjct: 233 MRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRC 292

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           +++A  +F+ +   D+VTW  MI+G   NG +  ALGLF  M   G RP+S+T+ SLL A
Sbjct: 293 LDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPA 352

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
            + L  LK+G+ +H + I+  +  +  + +AL+D+Y KC  V+ +  ++        V  
Sbjct: 353 LTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIG 412

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           + +++G V NG++ KA+++FR +L + ++PN  T+ S+LPA A ++ L     IH Y++R
Sbjct: 413 STVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLR 472

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
             +     V + L+D+Y+KCG L+ +H IFS++ +KD+  V W+ +I+ +  +G  + A+
Sbjct: 473 NAYEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDE--VTWNSMISSFSQNGEPQEAL 530

Query: 503 SLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIV 560
            LF++M   G++ N VT +SAL AC+    +  G ++   +++      +AD +  + ++
Sbjct: 531 DLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGP---IKADIFAESALI 587

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           D+  + G ++ A  +   MP K     W +++ A   HG V+
Sbjct: 588 DMYAKCGNMELALRVFEFMPDK-NEVSWNSIISAYGAHGLVK 628



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 145/486 (29%), Positives = 246/486 (50%), Gaps = 12/486 (2%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMD---TFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           +++ C       LG+ +H R +++G   +     +   L+ MY+     + A  VF A+ 
Sbjct: 38  LLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALP 97

Query: 174 EH---SVVSWNTLISGYFKNAYAKEALVVF--DWMLKSGVEPDCASVVSVLPACGYLKEI 228
                S + WN LI G+    +   A++ +   W   +   PD  ++  V+ +C  L  +
Sbjct: 98  RAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAV 157

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
            +GR++H       L  ++   +AL+ MY   G + +AR  FD M  RD V W  M++GY
Sbjct: 158 SLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGY 217

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
              GDV  A+ LF+ M+  G  PN  T+   LS C++   L  G  LH+  +K  LE EV
Sbjct: 218 IKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEV 277

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            V   L+ MYAKC  +  ++++F    +   V WN +++GCV NGL  +A+ LF  ML  
Sbjct: 278 AVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRS 337

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
              P+  TL SLLPA   L  L+Q   +H Y+IR        + + L+DIY KC  + +A
Sbjct: 338 GARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTA 397

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
             ++     +  D+V+ S +I+GY ++G  E A+ +F+ +++  ++PN VT  S L AC+
Sbjct: 398 RNLYDA--ARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACA 455

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
               L  G ++  ++L N     +    + ++D+  + GRLD ++ +   M LK     W
Sbjct: 456 SISALPLGQEIHGYVLRNAYE-GKCYVESALMDMYAKCGRLDLSHYIFSKMSLK-DEVTW 513

Query: 589 GALLGA 594
            +++ +
Sbjct: 514 NSMISS 519


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/612 (37%), Positives = 356/612 (58%), Gaps = 9/612 (1%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           SL   +G+  + R++FD++ E   +L+  +++ Y  N  S + +K++  +++ G +  D+
Sbjct: 84  SLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHG-FRYDD 142

Query: 112 YTYPIVIKACTDLAWRKLGIALHGR-VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD 170
             +   +KACT+L     G  +H + V +  FD     G  L+ MY   GE+K+A KVF+
Sbjct: 143 IVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNVVLTG--LLDMYAKCGEIKSAHKVFN 200

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
            +   +VV W ++I+GY KN   +E LV+F+ M ++ V  +  +  +++ AC  L  +  
Sbjct: 201 DITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQ 260

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
           G+  H  +    +  +     +L+DMYVKCG ++ AR VF+  S  D+V WT+MI GY  
Sbjct: 261 GKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTH 320

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           NG V  AL LFQ M+   ++PN +TI S+LS C  +  L+ GRS+H  +IK  +  +  V
Sbjct: 321 NGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIW-DTNV 379

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
             AL+ MYAKC   + +  VF   S+K  V WN+I++G   NG   +A+ LF +M  E V
Sbjct: 380 ANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESV 439

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL--SVVEVSTGLIDIYSKCGSLESA 468
            PN  T+ SL  A A L  L    ++H Y ++ GFL  S V V T L+D Y+KCG  +SA
Sbjct: 440 TPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSA 499

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
             IF    I++K+ + WS +I GYG  G    ++ LF+EM++   +PNE TFTS L AC 
Sbjct: 500 RLIFD--TIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACG 557

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           H G+++EG   F+ M +++       HYTC+VD+L RAG L++A D+I  MP++P    +
Sbjct: 558 HTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCF 617

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
           GA L  C +H   +LGE+  K + +L P++   YVL+S LY++  RW  A+ VR++M ++
Sbjct: 618 GAFLHGCGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQR 677

Query: 649 GLRKAPAHSLIE 660
           GL K   HS +E
Sbjct: 678 GLSKIAGHSTME 689



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 152/501 (30%), Positives = 241/501 (48%), Gaps = 12/501 (2%)

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           HG +   G   D  +   L+++Y  FG  K AR VFD + E     W  ++  Y  N  +
Sbjct: 64  HGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKES 123

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
            E + ++D ++K G   D       L AC  L++++ G+ IH  +       N+     L
Sbjct: 124 VEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVPSFDNV-VLTGL 182

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           +DMY KCG +  A  VF+ ++ R+VV WTSMI GY  N      L LF  M+   V  N 
Sbjct: 183 LDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNE 242

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            T G+L+ AC+ L  L +G+  H   +K  +E    + T+L+DMY KC  +  + +VF  
Sbjct: 243 YTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNE 302

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
            S    V W A++ G  HNG   +A+ LF++M    ++PN  T+ S+L    ++ +L+  
Sbjct: 303 HSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELG 362

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
            ++H   I+ G      V+  L+ +Y+KC     A  +F E+   +KDIV W+ II+G+ 
Sbjct: 363 RSVHGLSIKVGIWD-TNVANALVHMYAKCYQNRDAKYVF-EME-SEKDIVAWNSIISGFS 419

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
            +G    A+ LF  M    V PN VT  S   AC+  G L  G  L  + ++     S +
Sbjct: 420 QNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSS 479

Query: 554 DHY-TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
            H  T ++D   + G    A  +  T+  K T   W A++G     G+     + +  LF
Sbjct: 480 VHVGTALLDFYAKCGDPQSARLIFDTIEEKNT-ITWSAMIGGYGKQGDT----IGSLELF 534

Query: 613 E--LEPENPGNYVLLSKLYSA 631
           E  L+ +   N    + + SA
Sbjct: 535 EEMLKKQQKPNESTFTSILSA 555



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 155/300 (51%), Gaps = 3/300 (1%)

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           I+  R  H ++ G  L  +I+    LV +Y   G   +ARLVFD++ E D   W  M+  
Sbjct: 57  IDSLRQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRC 116

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y LN +    + L+ L+   G R + +     L AC+ L  L  G+ +H   +K     +
Sbjct: 117 YCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVKVP-SFD 175

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
            +V T L+DMYAKC  +K + +VF   + +  V W +++AG V N L  + + LF +M  
Sbjct: 176 NVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRE 235

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
             V  N+ T  +L+ A   L+ L Q    H  L++ G      + T L+D+Y KCG + +
Sbjct: 236 NNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISN 295

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A ++F+E      D+V+W+ +I GY  +G    A+SLF++M    ++PN VT  S L  C
Sbjct: 296 ARRVFNE--HSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGC 353


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/665 (34%), Positives = 370/665 (55%), Gaps = 7/665 (1%)

Query: 5   SHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAY---GHV 60
             H L       ++L+    +  ++   +++H   + +  LF  ++ + ++  Y   G +
Sbjct: 236 QQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSI 295

Query: 61  SNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKA 120
              R +FD+M  +S   +  ++  YA  G S  + ++F  M + G   P+  TY  V+ A
Sbjct: 296 HEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVV-PNRITYINVLNA 354

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
            +  A  K G  +H  +L  G + D  VG  L+ MY   G  K  R+VF+ +    +++W
Sbjct: 355 FSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAW 414

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
           NT+I G  +    +EA  ++  M + G+ P+  + V +L AC     +  GR IH  V  
Sbjct: 415 NTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVK 474

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
                +I+  NAL+ MY +CGS+ +ARL+F++M  +D+++WT+MI G A +G    AL +
Sbjct: 475 DGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAV 534

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
           FQ MQ  G++PN +T  S+L+ACSS   L  GR +H   I+  L  +  V   L++MY+ 
Sbjct: 535 FQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSM 594

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           C  VK + QVF R +++  V +NA++ G   + L ++A++LF ++  E ++P+  T  ++
Sbjct: 595 CGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINM 654

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L A A    L+ A  IH  +++ G+LS   +   L+  Y+KCGS   A  +F +  +  +
Sbjct: 655 LNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDK--MMKR 712

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
           +++ W+ II G   HG G+  + LF+ M   G++P+ VTF S L ACSH GLL+EG   F
Sbjct: 713 NVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYF 772

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             M  +       +HY C+VDLLGRAG+LDE   LI+TMP +    +WGALLGAC IHGN
Sbjct: 773 CSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGN 832

Query: 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           V + E AA+   +L+P+N   YV LS +Y+A   W  A  +R +M+++G+ K P  S IE
Sbjct: 833 VPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIE 892

Query: 661 VRNIL 665
           V + L
Sbjct: 893 VGDKL 897



 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 166/589 (28%), Positives = 302/589 (51%), Gaps = 11/589 (1%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLR-SSLVRAY---GHVSNVRILFDEM-- 70
           +K++++    K +   +++H  II    +      ++L+  Y   G +   R +++++  
Sbjct: 145 MKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNH 204

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
           +ER+   +N ++  Y Q G   ++LK+   M + G       T   ++ +C   +  + G
Sbjct: 205 TERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHG-LALGRATTMRLLSSCKSPSALECG 263

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
             +H   +      D  V NC++ MY   G +  AR+VFD M   SVVSW  +I GY   
Sbjct: 264 REIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADC 323

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
            +++ A  +F  M + GV P+  + ++VL A      ++ G+ +H  +       ++A  
Sbjct: 324 GHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVG 383

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
            ALV MY KCGS  + R VF+++  RD++ W +MI G A  G+   A  ++  MQ EG+ 
Sbjct: 384 TALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMM 443

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           PN +T   LL+AC +   L  GR +H+  +K     ++ V+ ALI MYA+C  +K +  +
Sbjct: 444 PNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLL 503

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F +  +K  + W A++ G   +GL  +A+ +F+ M    ++PN  T  S+L A +  A L
Sbjct: 504 FNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAAL 563

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
                IH  +I  G  +   V+  L+++YS CGS++ A ++F  +    +DIV ++ +I 
Sbjct: 564 DWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMT--QRDIVAYNAMIG 621

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           GY  H  G+ A+ LF  + + G++P++VT+ + L+AC++ G L+   ++ + +L++    
Sbjct: 622 GYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKD-GYL 680

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           S       +V    + G   +A  +   M +K     W A++G C  HG
Sbjct: 681 SDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVISWNAIIGGCAQHG 728



 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 164/506 (32%), Positives = 269/506 (53%), Gaps = 9/506 (1%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM- 172
           Y  ++K C ++     G  +H  ++     +D +  N LI MY+  G ++ AR+V++ + 
Sbjct: 144 YMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLN 203

Query: 173 -WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
             E +V SWN ++ GY +  Y +EAL +   M + G+    A+ + +L +C     +E G
Sbjct: 204 HTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECG 263

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           R IH      RL  ++   N +++MY KCGS++EAR VFD+M  + VV+WT +I GYA  
Sbjct: 264 REIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADC 323

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G    A  +FQ MQ EGV PN +T  ++L+A S    LK G+++H+  +    E ++ V 
Sbjct: 324 GHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVG 383

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
           TAL+ MYAKC   K   QVF +   +  + WN ++ G    G   +A E++ QM  E + 
Sbjct: 384 TALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMM 443

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           PN  T   LL A      L     IH  +++ GF+  + V   LI +Y++CGS++ A  +
Sbjct: 444 PNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLL 503

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F+++    KDI+ W+ +I G    G G  A+++F++M Q+G++PN VT+TS L+ACS   
Sbjct: 504 FNKMV--RKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPA 561

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
            LD G  +   ++E     + A     +V++    G + +A  +   M  +   A + A+
Sbjct: 562 ALDWGRRIHQQVIEA-GLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVA-YNAM 619

Query: 592 LGACVIHGNVELGEVAAKWLFELEPE 617
           +G    H    LG+ A K    L+ E
Sbjct: 620 IGGYAAH---NLGKEALKLFDRLQEE 642



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 131/476 (27%), Positives = 234/476 (49%), Gaps = 49/476 (10%)

Query: 221 ACGYLKEIEMGRMIHELVAGGRLGKNIAAW---------NALVDMYVKCGSVNEARLVFD 271
           +C Y+K ++    + +LVAG  + ++I            NAL++MY++CGS+ EAR V++
Sbjct: 141 SCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWN 200

Query: 272 RM--SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           ++  +ER V +W +M+ GY   G +  AL L + MQ  G+     T   LLS+C S   L
Sbjct: 201 KLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSAL 260

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           + GR +H   +K  L  +V V   +++MYAKC  +  + +VF +   K  V W  I+ G 
Sbjct: 261 ECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGY 320

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
              G +  A E+F++M  E V PN  T  ++L A++  A L+    +H +++  G  S +
Sbjct: 321 ADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDL 380

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            V T L+ +Y+KCGS +   ++F ++   ++D++ W+ +I G    G+ E A  ++ +M 
Sbjct: 381 AVGTALVKMYAKCGSYKDCRQVFEKLV--NRDLIAWNTMIGGLAEGGNWEEASEIYHQMQ 438

Query: 510 QSGVQPNEVTFTSALHACS-----------HGGLLDEGLDLFNFMLEN-----HQTCS-- 551
           + G+ PN++T+   L+AC            H  ++ +G  +F+  ++N     +  C   
Sbjct: 439 REGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGF-MFDISVQNALISMYARCGSI 497

Query: 552 -----------RAD--HYTCIVDLLGRAGRLDEAYDLIRTMP---LKPTHAVWGALLGAC 595
                      R D   +T ++  L ++G   EA  + + M    LKP    + ++L AC
Sbjct: 498 KDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNAC 557

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYV-LLSKLYSAVRRWKDAENVRDVMDEKGL 650
                ++ G    + + E       +    L  +YS     KDA  V D M ++ +
Sbjct: 558 SSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDI 613



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 160/332 (48%), Gaps = 7/332 (2%)

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A+ + Q +Q +G R NS     +L  C  +  L  GR +H   I+     +     ALI+
Sbjct: 125 AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALIN 184

Query: 357 MYAKCNLVKLSFQVFARTS-KKKTV-PWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           MY +C  ++ + QV+ + +  ++TV  WNA++ G V  G   +A++L R+M    +    
Sbjct: 185 MYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGR 244

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
           AT   LL +    + L+    IH   ++   L  V V+  ++++Y+KCGS+  A ++F +
Sbjct: 245 ATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDK 304

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
             ++ K +V W++II GY   GH E A  +F++M Q GV PN +T+ + L+A S    L 
Sbjct: 305 --METKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALK 362

Query: 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
            G  + + +L        A   T +V +  + G   +   +   +  +   A W  ++G 
Sbjct: 363 WGKTVHSHILNAGHESDLAVG-TALVKMYAKCGSYKDCRQVFEKLVNRDLIA-WNTMIGG 420

Query: 595 CVIHGN-VELGEVAAKWLFELEPENPGNYVLL 625
               GN  E  E+  +   E    N   YV+L
Sbjct: 421 LAEGGNWEEASEIYHQMQREGMMPNKITYVIL 452


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/607 (36%), Positives = 342/607 (56%), Gaps = 7/607 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G++   R++FD + E+S+  + T++    + G S+ SL++F  ++  G   PD Y    V
Sbjct: 197 GNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLME-GNVVPDGYILSTV 255

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + AC+ L + + G  +H  +L  G + D  + N LI  Y+  G V+AA K+FD M   ++
Sbjct: 256 LSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNI 315

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           +SW TL+SGY +N+  KEA+ +F  M K G++PD  +  S+L +C  L  +E G  +H  
Sbjct: 316 ISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAY 375

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG---DV 294
                LG +    N+L+DMY KC  + EAR VFD  +  DVV + +MI GY+  G   ++
Sbjct: 376 TIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWEL 435

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
            +AL +F  M+F  +RP+ LT  SLL A +SL  L   + +H    K  L  ++   +AL
Sbjct: 436 HDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSAL 495

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           I +Y+ C  +K S  VF     K  V WN++ +G V      +A+ LF ++ +    P++
Sbjct: 496 IAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDE 555

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
            T   ++ A   LA LQ     HC L++ G      ++  L+D+Y+KCGS E AHK F  
Sbjct: 556 FTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDS 615

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
                +D+V W+ +I+ Y  HG G  A+ + ++M+  G++PN +TF   L ACSH GL++
Sbjct: 616 AA--SRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVE 673

Query: 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           +GL  F  ML         +HY C+V LLGRAGRL+EA +LI  MP KP   VW +LL  
Sbjct: 674 DGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAAIVWRSLLSG 732

Query: 595 CVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP 654
           C   GNVEL E AA+     +P++ G++ LLS +Y++   W DA+ VR+ M  +G+ K P
Sbjct: 733 CAKAGNVELAEYAAEMAILSDPKDSGSFTLLSNIYASKGMWTDAKKVRERMKFEGVVKEP 792

Query: 655 AHSLIEV 661
             S IE+
Sbjct: 793 GRSWIEI 799



 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 197/675 (29%), Positives = 331/675 (49%), Gaps = 47/675 (6%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSER 73
           +L+Q  A    +     +H  II SG  L T+L + L+  Y   G +   R +F++M ER
Sbjct: 49  RLLQLRALDDPLLYHNVVHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPER 108

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL--AWRKLGI 131
           +   ++T++     +G   +SL +FL   R  + +P+ Y     I+AC+ L  + R +  
Sbjct: 109 NLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRWMVF 168

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            L   ++ + FD D +VG  LI  Y+  G +  AR VFDA+ E S V+W T+ISG  K  
Sbjct: 169 QLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMG 228

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
            +  +L +F  +++  V PD   + +VL AC  L  +E G+ IH  +      K+ +  N
Sbjct: 229 RSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMN 288

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            L+D YVKCG V  A  +FD M  +++++WT++++GY  N   + A+ LF  M   G++P
Sbjct: 289 VLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKP 348

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +     S+L++C+SL+ L+ G  +HA+TIK NL  +  V  +LIDMYAKC+ +  + +VF
Sbjct: 349 DMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVF 408

Query: 372 ARTSKKKTVPWNAILAGCVHNGLA---RKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
              +    V +NA++ G    G       A+ +F  M   ++ P+  T  SLL A A L 
Sbjct: 409 DIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLT 468

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            L  +  IH  + ++G    +   + LI +YS C  L+ +  +F E+ +  KD+V+W+ +
Sbjct: 469 SLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKV--KDLVIWNSM 526

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGGLLDEGL 537
            +GY      E A++LF E+  S  +P+E TF   + A             H  LL  GL
Sbjct: 527 FSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGL 586

Query: 538 D----LFNFMLENHQTCSRADH---------------YTCIVDLLGRAGRLDEAYDLIRT 578
           +    + N +L+ +  C   +                +  ++      G   +A  ++  
Sbjct: 587 ECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEK 646

Query: 579 M---PLKPTHAVWGALLGACVIHGNVE--LGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633
           M    ++P +  +  +L AC   G VE  L +      F +EPE   +YV +  L     
Sbjct: 647 MMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETE-HYVCMVSLLGRAG 705

Query: 634 RWKDAENVRDVMDEK 648
           R  +A  + + M  K
Sbjct: 706 RLNEARELIEKMPTK 720



 Score =  221 bits (564), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 139/481 (28%), Positives = 235/481 (48%), Gaps = 11/481 (2%)

Query: 29  IAGTKQLHAFIITSG-----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMK 83
           + G KQ+HA I+  G      L   L  S V+  G V     LFD M  ++   + T++ 
Sbjct: 265 LEGGKQIHAHILRYGHEKDASLMNVLIDSYVKC-GRVRAAHKLFDGMPNKNIISWTTLLS 323

Query: 84  MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD 143
            Y QN    +++++F  M + G   PD +    ++ +C  L   + G  +H   +     
Sbjct: 324 GYKQNSLHKEAMELFTSMPKFG-LKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLG 382

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE---ALVVF 200
            D++V N LI MY     +  ARKVFD      VV +N +I GY +     E   AL +F
Sbjct: 383 NDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIF 442

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
             M    + P   + VS+L A   L  + + + IH L+    L  +I A +AL+ +Y  C
Sbjct: 443 HDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNC 502

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
             + ++RLVFD M  +D+V W SM +GY    +   AL LF  +Q    RP+  T   ++
Sbjct: 503 YCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMV 562

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           +A  +L  L+ G+  H   +K+ LEC   +  AL+DMYAKC   + + + F   + +  V
Sbjct: 563 TAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVV 622

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            WN++++   ++G  RKA+++  +M+ E +EPN  T   +L A +    ++  +     +
Sbjct: 623 CWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELM 682

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           +R+G     E    ++ +  + G L  A ++  ++P K   I VW  +++G    G+ E 
Sbjct: 683 LRFGIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAAI-VWRSLLSGCAKAGNVEL 741

Query: 501 A 501
           A
Sbjct: 742 A 742


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/649 (35%), Positives = 364/649 (56%), Gaps = 8/649 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERS 74
           L+ Q++ T  +   K +HA II +     + L + L+R Y   G + + R +FD+ S   
Sbjct: 52  LLHQFSNT--LIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPE 109

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
           + + N ++  + +N   H  +     M+   +   ++YT    +KACTDL   ++G+ + 
Sbjct: 110 TAVCNAMIAGFLRN-QQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEII 168

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
              +  GF +  +VG+ ++   +  G +  A+KVFD M E  VV WN++I GY +     
Sbjct: 169 RAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFW 228

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           E++ +F  M+  G+ P   ++ ++L ACG     ++G   H  V    +G ++    +LV
Sbjct: 229 ESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLV 288

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           DMY   G    A LVFD M  R +++W +MI+GY  NG +  +  LF+ +   G   +S 
Sbjct: 289 DMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSG 348

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T+ SL+  CS    L+ GR LH+  I++ LE  +++ TA++DMY+KC  +K +  VF R 
Sbjct: 349 TLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRM 408

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
            KK  + W A+L G   NG A  A++LF QM  E V  N  TL SL+   A L  L +  
Sbjct: 409 GKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGR 468

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            +H + IR+G+     +++ LID+Y+KCG + SA K+F+      KD+++ + +I GYGM
Sbjct: 469 TVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNN-EFHLKDVILCNSMIMGYGM 527

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           HGHG  A+ ++  M++  ++PN+ TF S L ACSH GL++EG  LF+ M  +H    +  
Sbjct: 528 HGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHK 587

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HY C+VDL  RAGRL+EA +L++ MP +P+  V  ALL  C  H N  +G   A  L  L
Sbjct: 588 HYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISL 647

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +  N G YV+LS +Y+  R+W+    +R +M  +G++K P +SLIEV N
Sbjct: 648 DYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGN 696


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 259/692 (37%), Positives = 377/692 (54%), Gaps = 61/692 (8%)

Query: 28  SIAGTKQLHAFIITSGPLFTHLRSSLVRAY--GHVSNVRILFDEM---SERSSFLYNTVM 82
           S+A  K LH   I  G LF HL ++L+  Y   + +   IL  E    S  S F +N ++
Sbjct: 173 SLAHAKLLHQQSIMQGLLF-HLATNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLI 231

Query: 83  KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
           +     G+  D   ++  M  LG + PD+YT+P V KAC +L+   LG +LH  V  +GF
Sbjct: 232 RRALHLGSPRDVFTLYRQMKSLG-WTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGF 290

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV---VSWNTLISGYFKNAYAKEALVV 199
             + FV N +++MY   G ++ A  +FD +    +   VSWN+++S Y   + A  AL +
Sbjct: 291 ASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALAL 350

Query: 200 FDWML-KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           F  M  +  + PD  S+V++LPAC  L     GR +H       L  ++   NA+VDMY 
Sbjct: 351 FHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYA 410

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE----------- 307
           KCG + EA  VF RM  +DVV+W +M+ GY+  G + +AL LF+ M  E           
Sbjct: 411 KCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTA 470

Query: 308 ------------------------GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK-- 341
                                   G RPN +T+ SLLSAC S+  L  G+  H + IK  
Sbjct: 471 VITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFI 530

Query: 342 QNLEC------EVIVETALIDMYAKCNLVKLSFQVFARTSKKK--TVPWNAILAGCVHNG 393
            NL+       ++ V   LIDMYAKC   +++ ++F   S K    V W  ++ G   +G
Sbjct: 531 LNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHG 590

Query: 394 LARKAVELFRQM--LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV-VE 450
            A  A++LF  M  + + ++PND TL+  L A A LA L+    +H Y++R  + SV + 
Sbjct: 591 DANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLF 650

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           V+  LID+YSK G +++A  +F  +P   ++ V W+ ++ GYGMHG GE A+ +F EM +
Sbjct: 651 VANCLIDMYSKSGDVDTAQIVFDNMP--QRNAVSWTSLMTGYGMHGRGEDALRVFDEMRK 708

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
             + P+ +TF   L+ACSH G++D G++ FN M ++       +HY C+VDL GRAGRL 
Sbjct: 709 VPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLG 768

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630
           EA  LI  MP++PT  VW ALL AC +H NVELGE AA  L ELE  N G+Y LLS +Y+
Sbjct: 769 EAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYA 828

Query: 631 AVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
             RRWKD   +R  M   G++K P  S I+ R
Sbjct: 829 NARRWKDVARIRYTMKRTGIKKRPGCSWIQGR 860


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/660 (36%), Positives = 361/660 (54%), Gaps = 11/660 (1%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAY---GHVSNVR 64
           LP    L+ +L+   A   S+   + LHA ++  G L     R+ L+  Y   G +++ R
Sbjct: 19  LPHGGALLHRLLPACATLPSL---RALHARLLAHGLLRALRARTKLLSCYAALGDLASAR 75

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR-LGEYNPDNYTYPIVIKACTD 123
            + DE      + Y   +  +A  G   D+L +  GM R   E + D     + +KA   
Sbjct: 76  RVLDETPRPDPYTYRVALGWHAAAGRHADALALHRGMRRRCPEAHDDVVLLSLALKASVR 135

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
            A  + G  LH   +  G   D FV NCL+ MY   G+++ ARKVFD +   +VVSW ++
Sbjct: 136 SADFRYGRRLHCNAVKAG-GADGFVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSM 194

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243
           +SG  +N +A+E L +F+ M +  V P   ++ SVL AC  L  +  GR +H  V    +
Sbjct: 195 LSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGM 254

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
             N     A++DMYVKCG V +AR +FD +   D+V WT+MI GY  NG   +AL LF  
Sbjct: 255 VFNPFITAAVLDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSD 314

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
            +F  + PNS+TI ++LSA + L  L  GR +HA ++K  +    +V  AL+DMYAKC  
Sbjct: 315 KKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKLLVIENDVVMNALVDMYAKCKA 374

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           +  +  +F R S K  V WN+++AG V N +  +A+ LF QM V+   P+  ++ + L A
Sbjct: 375 LSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQGSSPDAISIVNALSA 434

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
              L DL      H Y ++  FLS V V+T L+++Y+KC  L SA ++FSE  + +++ V
Sbjct: 435 CVCLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNLYNKCADLPSAQRVFSE--MSERNSV 492

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W  +I GYGM G    ++ L  +M++  +QPNEV FTS L  CSH G++  G   F+ M
Sbjct: 493 TWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILSTCSHTGMVSVGKMCFDSM 552

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
            +         HY C+VD+L RAG L+EA + I+ MP+    ++WGA L  C +H  +E 
Sbjct: 553 AQYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMPADISIWGAFLHGCKLHSRLEF 612

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           GE A   +  L P+ P  YVL+S LY++  RW  +  +R +M E+GL K P  S + + N
Sbjct: 613 GEEAINRMMVLHPDKPDFYVLMSNLYTSYGRWDKSLAIRRLMQERGLVKLPGCSSVGLEN 672


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/651 (34%), Positives = 368/651 (56%), Gaps = 12/651 (1%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY---GHVSNVRILFDEM 70
           + ++   A  +++   ++L+  I+ +G    LF  + ++L+  +   G + +   +FD +
Sbjct: 215 VSMLNACADARNVDKGRELYNLILKAGWDTDLF--VGTALINMHIKCGDIGDATKVFDNL 272

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
             R    + +++   A++G    +  +F  M   G   PD   +  +++AC      + G
Sbjct: 273 PTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEG-VQPDKVAFVSLLRACNHPEALEQG 331

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
             +H R+   G+D + +VG  +++MY   G ++ A +VFD +   +VVSW  +I+G+ ++
Sbjct: 332 KKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQH 391

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
               EA + F+ M++SG+EP+  + +S+L AC     ++ G+ I + +     G +    
Sbjct: 392 GRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR 451

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
            AL+ MY KCGS+ +A  VF+++S+++VV W +MI  Y  +    NAL  FQ +  EG++
Sbjct: 452 TALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           PNS T  S+L+ C S   L+ G+ +H   +K  LE ++ V  AL+ M+  C  +  +  +
Sbjct: 512 PNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNL 571

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F    K+  V WN I+AG V +G  + A + F+ M    ++P+  T   LL A A    L
Sbjct: 572 FNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEAL 631

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
            +   +H  +    F   V V TGLI +Y+KCGS+E AH++F ++P   K++  W+ +IA
Sbjct: 632 TEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP--KKNVYSWTSMIA 689

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           GY  HG G+ A+ LF +M Q GV+P+ +TF  AL AC+H GL++EGL  F  M E     
Sbjct: 690 GYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIE 748

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
            R +HY C+VDL GRAG L+EA + I  M ++P   VWGALLGAC +H NVEL E AA+ 
Sbjct: 749 PRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQK 808

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
             EL+P + G +V+LS +Y+A   WK+   +R VM ++G+ K P  S IEV
Sbjct: 809 KLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEV 859



 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 186/605 (30%), Positives = 324/605 (53%), Gaps = 16/605 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAYGHVSNV---RILFDEMSE 72
           L+Q     K++   ++++  I  SG    +F  +R++L+  Y    N    + +FD+M E
Sbjct: 116 LLQLCIKFKNLGDGERIYNHIKKSGVQPDIF--MRNTLINMYAKCGNTISAKQIFDDMRE 173

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           +  + +N ++  Y Q+G   ++ K+   M++     PD  T+  ++ AC D      G  
Sbjct: 174 KDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQ-DSVKPDKRTFVSMLNACADARNVDKGRE 232

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           L+  +L  G+D D FVG  LI M++  G++  A KVFD +    +V+W ++I+G  ++  
Sbjct: 233 LYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGR 292

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            K+A  +F  M + GV+PD  + VS+L AC + + +E G+ +H  +        I    A
Sbjct: 293 FKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTA 352

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           ++ MY KCGS+ +A  VFD +  R+VV+WT+MI G+A +G +  A   F  M   G+ PN
Sbjct: 353 ILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPN 412

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            +T  S+L ACSS   LKRG+ +    I+     +  V TAL+ MYAKC  +K + +VF 
Sbjct: 413 RVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFE 472

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           + SK+  V WNA++   V +     A+  F+ +L E ++PN +T  S+L        L+ 
Sbjct: 473 KISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLEL 532

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              +H  +++ G  S + VS  L+ ++  CG L SA  +F+++P   +D+V W+ IIAG+
Sbjct: 533 GKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP--KRDLVSWNTIIAGF 590

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
             HG  + A   FK M +SG++P+++TFT  L+AC+    L EG  L   + E    C  
Sbjct: 591 VQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDV 650

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
               T ++ +  + G +++A+ +   +P K  ++ W +++     HG    G+ A +  +
Sbjct: 651 LVG-TGLISMYTKCGSIEDAHQVFHKLPKKNVYS-WTSMIAGYAQHGR---GKEALELFY 705

Query: 613 ELEPE 617
           +++ E
Sbjct: 706 QMQQE 710



 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 155/492 (31%), Positives = 263/492 (53%), Gaps = 4/492 (0%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           TY  +++ C        G  ++  +  +G   D F+ N LI MY   G   +A+++FD M
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDM 171

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
            E  V SWN L+ GY ++   +EA  + + M++  V+PD  + VS+L AC   + ++ GR
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGR 231

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            ++ L+       ++    AL++M++KCG + +A  VFD +  RD+VTWTSMI G A +G
Sbjct: 232 ELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHG 291

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
             + A  LFQ M+ EGV+P+ +   SLL AC+    L++G+ +HA   +   + E+ V T
Sbjct: 292 RFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGT 351

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           A++ MY KC  ++ + +VF     +  V W A++AG   +G   +A   F +M+   +EP
Sbjct: 352 AILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEP 411

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           N  T  S+L A +  + L++   I  ++I  G+ S   V T L+ +Y+KCGSL+ AH++F
Sbjct: 412 NRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVF 471

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
            +I    +++V W+ +I  Y  H   + A++ F+ +++ G++PN  TFTS L+ C     
Sbjct: 472 EKIS--KQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDS 529

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           L+ G    +F++      S       +V +    G L  A +L   MP K     W  ++
Sbjct: 530 LELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTII 587

Query: 593 GACVIHGNVELG 604
              V HG  ++ 
Sbjct: 588 AGFVQHGKNQVA 599



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 129/464 (27%), Positives = 233/464 (50%), Gaps = 23/464 (4%)

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
           R+L T F      G C++     F ++K  +K             N +++   K     E
Sbjct: 51  RMLTTSFSGRCPKGRCVV-----FADIKDTQKA------------NAVLNRLSKAGQFNE 93

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           A+ V + +  S ++    +  ++L  C   K +  G  I+  +    +  +I   N L++
Sbjct: 94  AMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLIN 153

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           MY KCG+   A+ +FD M E+DV +W  ++ GY  +G    A  L + M  + V+P+  T
Sbjct: 154 MYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRT 213

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
             S+L+AC+    + +GR L+   +K   + ++ V TALI+M+ KC  +  + +VF    
Sbjct: 214 FVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLP 273

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
            +  V W +++ G   +G  ++A  LF++M  E V+P+     SLL A      L+Q   
Sbjct: 274 TRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKK 333

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           +H  +   G+ + + V T ++ +Y+KCGS+E A ++F    +K +++V W+ +IAG+  H
Sbjct: 334 VHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFD--LVKGRNVVSWTAMIAGFAQH 391

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE-NHQTCSRAD 554
           G  + A   F +M++SG++PN VTF S L ACS    L  G  + + ++E  + +  R  
Sbjct: 392 GRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRV- 450

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
             T ++ +  + G L +A+ +   +  K     W A++ A V H
Sbjct: 451 -RTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQH 492


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/654 (35%), Positives = 361/654 (55%), Gaps = 12/654 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIIT--SGPLFTHLRS-----SLVRAYGHVSNVRILFDEMS 71
           L++   +  ++   + LHA ++T   G L   LR+     S   A G +++ R++FD   
Sbjct: 32  LLRLLPSCGTLPSLRVLHARLLTHTQGLLLGSLRARTKLLSCYAALGDLASARMVFDGTP 91

Query: 72  ERSSFLYNTVM--KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
              ++ Y  ++   + A+  A   +L   +   R      D++   + +KAC   A    
Sbjct: 92  RPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQDDFVLSLALKACIRSADYGY 151

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  LH   +  G   D FV N L+ MY   G+++ ARKVF+ +   +VVSW +++SG  +
Sbjct: 152 GTRLHCDAVKVG-GADGFVMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQ 210

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N +A + L++F+ M +  V P   ++ +V+ AC  L  +  GR +H  V    L  N   
Sbjct: 211 NGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSFI 270

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
             AL+DMYVKCG + +A+ VFD +S  D+V WT+MI GY  NG+  +AL LF   +F  +
Sbjct: 271 SAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANI 330

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
            PNS+TI ++LSA + L  L  GRS+H   +K  L    +V  AL+DMYAKC  V  + +
Sbjct: 331 VPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGLVEYTVVVNALVDMYAKCQAVSEANR 390

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           +F   S K  V WN++L+G   N +   A+ LF+QM ++   P+  ++   L A   L D
Sbjct: 391 IFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHALSASVCLGD 450

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L    + H Y +++ FLS + VST L+++Y+KCG L SA ++F E  + D++ V W  +I
Sbjct: 451 LLIGKSFHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRVFDE--MNDRNSVTWCAMI 508

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
            GYGM G    ++ LF EM++ GV PN+V FTS L  CSH G++      F+ M ++   
Sbjct: 509 GGYGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSILSTCSHTGMVTAAKRYFDSMAQHFNI 568

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
                HY C+VD+L RAG L+EA + I  MP++   +VWGA L  C +H  ++ GE A K
Sbjct: 569 TPSMKHYACMVDVLARAGNLEEALEFIDNMPMQADTSVWGAFLHGCELHSRLQFGEEAIK 628

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            +  L PE P  YVL+S LY++   W+ ++ +R  M EKGL K P +S I   N
Sbjct: 629 RMMVLHPERPDLYVLISNLYTSNGMWEKSQAIRRWMQEKGLVKLPGYSSIGREN 682


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/649 (35%), Positives = 358/649 (55%), Gaps = 7/649 (1%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSE 72
           +KL Q+    +  A  KQ+   II  G  L  +  ++L++ Y   G+V+  R +FD +  
Sbjct: 61  VKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVEN 120

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           ++   +N ++  YAQ G   ++  +F  M+  G   P   T+  V+ AC+  A    G  
Sbjct: 121 KTVVTWNALIAGYAQVGHVKEAFALFRQMVDEG-LEPSIITFLSVLDACSSPAGLNWGKE 179

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H +V+  GF  D  +G  L++MY+  G +  AR+VFD +    V ++N ++ GY K+  
Sbjct: 180 VHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGD 239

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            ++A  +F  M + G++P+  S +S+L  C   + +  G+ +H       L  +I    +
Sbjct: 240 WEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATS 299

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+ MY  CGS+  AR VFD M  RDVV+WT MI GYA NG++ +A GLF  MQ EG++P+
Sbjct: 300 LIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPD 359

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            +T   +++AC+    L   R +H+         +++V TAL+ MYAKC  +K + QVF 
Sbjct: 360 RITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFD 419

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
              ++  V W+A++   V NG   +A E F  M    +EP+  T  +LL A   L  L  
Sbjct: 420 AMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDV 479

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
            M I+   I+   +S V +   LI + +K GS+E A  IF    +  +D++ W+ +I GY
Sbjct: 480 GMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFD--TMVRRDVITWNAMIGGY 537

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
            +HG+   A+ LF  M++   +PN VTF   L ACS  G +DEG   F ++LE       
Sbjct: 538 SLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPT 597

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
              Y C+VDLLGRAG LDEA  LI++MP+KPT ++W +LL AC IHGN+++ E AA+   
Sbjct: 598 VKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCL 657

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            ++P +   YV LS +Y+A   W++   VR VM+ +G+RK    + IEV
Sbjct: 658 MIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEV 706



 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 172/538 (31%), Positives = 282/538 (52%), Gaps = 12/538 (2%)

Query: 101 MLRLGE--YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMN 158
           + RLGE   + D+ TY  + + CT+L    LG  +   ++  G  ++ +  N LI +Y  
Sbjct: 45  LQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSI 104

Query: 159 FGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSV 218
            G V  AR++FD++   +VV+WN LI+GY +  + KEA  +F  M+  G+EP   + +SV
Sbjct: 105 CGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSV 164

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
           L AC     +  G+ +H  V       +     ALV MYVK GS+++AR VFD +  RDV
Sbjct: 165 LDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDV 224

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
            T+  M+ GYA +GD   A  LF  MQ  G++PN ++  S+L  C +   L  G+++HA 
Sbjct: 225 STFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQ 284

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
            +   L  ++ V T+LI MY  C  ++ + +VF     +  V W  ++ G   NG    A
Sbjct: 285 CMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDA 344

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
             LF  M  E ++P+  T   ++ A AI A+L  A  IH  +   GF + + VST L+ +
Sbjct: 345 FGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHM 404

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           Y+KCG+++ A ++F  +P   +D+V WS +I  Y  +G+G  A   F  M +S ++P+ V
Sbjct: 405 YAKCGAIKDARQVFDAMP--RRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGV 462

Query: 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578
           T+ + L+AC H G LD G++++   ++     S       ++ +  + G ++ A  +  T
Sbjct: 463 TYINLLNACGHLGALDVGMEIYTQAIKA-DLVSHVPLGNALIIMNAKHGSVERARYIFDT 521

Query: 579 MPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE--LEPENPGNYVLLSKLYSAVRR 634
           M ++     W A++G   +HGN       A +LF+  L+     N V    + SA  R
Sbjct: 522 M-VRRDVITWNAMIGGYSLHGNAR----EALYLFDRMLKERFRPNSVTFVGVLSACSR 574


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/651 (34%), Positives = 367/651 (56%), Gaps = 12/651 (1%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY---GHVSNVRILFDEM 70
           + ++   A  +++   ++L+  I+ +G    LF  + ++L+  +   G + +   +FD +
Sbjct: 215 VSMLNACADARNVDKGRELYNLILKAGWDTDLF--VGTALINMHIKCGDIGDATKVFDNL 272

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
             R    + +++   A++G    +  +F  M   G   PD   +  +++AC      + G
Sbjct: 273 PTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEG-VQPDKVAFVSLLRACNHPEALEQG 331

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
             +H R+   G+D + +VG  +++MY   G ++ A +VFD +   +VVSW  +I+G+ ++
Sbjct: 332 KKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQH 391

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
               EA + F+ M++SG+EP+  + +S+L AC     ++ G+ I + +     G +    
Sbjct: 392 GRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR 451

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
            AL+ MY KCGS+ +A  VF+++S+++VV W +MI  Y  +    NAL  FQ +  EG++
Sbjct: 452 TALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           PNS T  S+L+ C S   L+ G+ +H   +K  LE ++ V  AL+ M+  C  +  +  +
Sbjct: 512 PNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNL 571

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F    K+  V WN I+AG V +G  + A + F+ M    ++P+  T   LL A A    L
Sbjct: 572 FNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEAL 631

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
            +   +H  +    F   V V TGLI +Y+KCGS+E AH++F ++P   K++  W+ +I 
Sbjct: 632 TEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP--KKNVYSWTSMIT 689

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           GY  HG G+ A+ LF +M Q GV+P+ +TF  AL AC+H GL++EGL  F  M E     
Sbjct: 690 GYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKE-FNIE 748

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
            R +HY C+VDL GRAG L+EA + I  M ++P   VWGALLGAC +H NVEL E AA+ 
Sbjct: 749 PRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQK 808

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
             EL+P + G +V+LS +Y+A   WK+   +R VM ++G+ K P  S IEV
Sbjct: 809 KLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEV 859



 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 178/570 (31%), Positives = 307/570 (53%), Gaps = 11/570 (1%)

Query: 51  SSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++L+  Y    N    + +FD+M E+  + +N ++  Y Q+G   ++ K+   M++    
Sbjct: 149 NTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQ-DSV 207

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PD  T+  ++ AC D      G  L+  +L  G+D D FVG  LI M++  G++  A K
Sbjct: 208 KPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATK 267

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VFD +    +V+W ++I+G  ++   K+A  +F  M + GV+PD  + VS+L AC + + 
Sbjct: 268 VFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEA 327

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +E G+ +H  +        I    A++ MY KCGS+ +A  VFD +  R+VV+WT+MI G
Sbjct: 328 LEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAG 387

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           +A +G +  A   F  M   G+ PN +T  S+L ACSS   LKRG+ +    I+     +
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSD 447

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
             V TAL+ MYAKC  +K + +VF + SK+  V WNA++   V +     A+  F+ +L 
Sbjct: 448 DRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLK 507

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           E ++PN +T  S+L        L+    +H  +++ G  S + VS  L+ ++  CG L S
Sbjct: 508 EGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMS 567

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A  +F+++P   +D+V W+ IIAG+  HG  + A   FK M +SG++P+++TFT  L+AC
Sbjct: 568 AKNLFNDMP--KRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNAC 625

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           +    L EG  L   + E    C      T ++ +  + G +++A+ +   +P K  ++ 
Sbjct: 626 ASPEALTEGRRLHALITEAAFDCDVLVG-TGLISMYTKCGSIEDAHQVFHKLPKKNVYS- 683

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPE 617
           W +++     HG    G+ A +  ++++ E
Sbjct: 684 WTSMITGYAQHGR---GKEALELFYQMQQE 710



 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 155/492 (31%), Positives = 263/492 (53%), Gaps = 4/492 (0%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           TY  +++ C        G  ++  +  +G   D F+ N LI MY   G   +A+++FD M
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDM 171

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
            E  V SWN L+ GY ++   +EA  + + M++  V+PD  + VS+L AC   + ++ GR
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGR 231

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            ++ L+       ++    AL++M++KCG + +A  VFD +  RD+VTWTSMI G A +G
Sbjct: 232 ELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHG 291

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
             + A  LFQ M+ EGV+P+ +   SLL AC+    L++G+ +HA   +   + E+ V T
Sbjct: 292 RFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGT 351

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           A++ MY KC  ++ + +VF     +  V W A++AG   +G   +A   F +M+   +EP
Sbjct: 352 AILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEP 411

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           N  T  S+L A +  + L++   I  ++I  G+ S   V T L+ +Y+KCGSL+ AH++F
Sbjct: 412 NRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVF 471

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
            +I    +++V W+ +I  Y  H   + A++ F+ +++ G++PN  TFTS L+ C     
Sbjct: 472 EKIS--KQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDS 529

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           L+ G    +F++      S       +V +    G L  A +L   MP K     W  ++
Sbjct: 530 LELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTII 587

Query: 593 GACVIHGNVELG 604
              V HG  ++ 
Sbjct: 588 AGFVQHGKNQVA 599



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 130/464 (28%), Positives = 234/464 (50%), Gaps = 23/464 (4%)

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
           R+L T F      G C++     F ++K  +K             N +++   K     E
Sbjct: 51  RMLTTSFSGRCPKGRCVV-----FADIKDTQKA------------NAVLNRLSKAGQFNE 93

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           A+ V + +  S ++    +  ++L  C   K +  G  I+  +    +  +I  WN L++
Sbjct: 94  AMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLIN 153

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           MY KCG+   A+ +FD M E+DV +W  ++ GY  +G    A  L + M  + V+P+  T
Sbjct: 154 MYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRT 213

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
             S+L+AC+    + +GR L+   +K   + ++ V TALI+M+ KC  +  + +VF    
Sbjct: 214 FVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLP 273

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
            +  V W +++ G   +G  ++A  LF++M  E V+P+     SLL A      L+Q   
Sbjct: 274 TRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKK 333

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           +H  +   G+ + + V T ++ +Y+KCGS+E A ++F    +K +++V W+ +IAG+  H
Sbjct: 334 VHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFD--LVKGRNVVSWTAMIAGFAQH 391

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE-NHQTCSRAD 554
           G  + A   F +M++SG++PN VTF S L ACS    L  G  + + ++E  + +  R  
Sbjct: 392 GRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRV- 450

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
             T ++ +  + G L +A+ +   +  K     W A++ A V H
Sbjct: 451 -RTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQH 492


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/590 (36%), Positives = 340/590 (57%), Gaps = 4/590 (0%)

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
           +FL+N +++ +A  G    +L  + GML  G   PD +T+P+V+K C  L     G A H
Sbjct: 72  AFLHNVMIRGFADAGLPAGALAAYRGMLEDGA-RPDRFTFPVVVKCCARLGGLDEGRAAH 130

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           G V+  G + D +  N L+A Y   G V+ A +VFD M    +V+WNT++ GY  N    
Sbjct: 131 GMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGS 190

Query: 195 EALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
            AL  F  M  +  V+ D   +++ L AC        G+ IH  V    L ++I    +L
Sbjct: 191 LALACFQEMHDALEVQHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSL 250

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           +DMY KCG V  AR VF  M  R VVTW  MI GYALN     A   F  M+ EG++   
Sbjct: 251 LDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEV 310

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
           +T  +LL+AC+       GRS+H + +++     V++ETAL++MY K   V+ S ++F +
Sbjct: 311 VTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGK 370

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
            + K  V WN ++A  ++  +  +A+ LF ++L + + P+  T+++++PA+ +L  L+  
Sbjct: 371 IANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHC 430

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             IH Y+I  G+     +   ++ +Y++ G + ++ +IF ++    KD++ W+ +I GY 
Sbjct: 431 RQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKM--VSKDVISWNTMIMGYA 488

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
           +HG G+TA+ +F EM  +G+QPNE TF S L ACS  GL+DEG   FN ML+ +    + 
Sbjct: 489 IHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQI 548

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
           +HY C+ DLLGR G L E    I +MP+ PT  VWG+LL A     ++++ E AA+ +F+
Sbjct: 549 EHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQ 608

Query: 614 LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           LE +N G Y++LS +Y+   RW+D E VR +M EKGLR+    SL+E+ +
Sbjct: 609 LEHDNTGCYIVLSSMYADAGRWEDVERVRLLMKEKGLRRTEPISLVELHS 658



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 208/445 (46%), Gaps = 5/445 (1%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           +SLV  Y   G V +   +FD M  R    +NT++  Y  NG    +L  F  M    E 
Sbjct: 146 NSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEV 205

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
             D+      + AC        G  +HG V+  G + D  VG  L+ MY   GEV  AR 
Sbjct: 206 QHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARS 265

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VF  M   +VV+WN +I GY  N    EA   F  M   G++ +  + +++L AC   + 
Sbjct: 266 VFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTES 325

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
              GR +H  V   +   ++    AL++MY K G V  +  +F +++ + +V+W +MI  
Sbjct: 326 SLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAA 385

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y        A+ LF  +  + + P+  T+ +++ A   L  L+  R +H++ I       
Sbjct: 386 YMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAEN 445

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
            ++  A++ MYA+   V  S ++F +   K  + WN ++ G   +G  + A+E+F +M  
Sbjct: 446 TLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKY 505

Query: 408 EVVEPNDATLNSLLPAYAILADLQQA-MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
             ++PN++T  S+L A ++   + +  M+ +  L  YG +  +E    + D+  + G L 
Sbjct: 506 NGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLR 565

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAG 491
              +    +PI D    VW  ++  
Sbjct: 566 EVLQFIESMPI-DPTSRVWGSLLTA 589



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 166/354 (46%), Gaps = 5/354 (1%)

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
           RL     +  +LV      G ++EA      +   D      MI G+A  G    AL  +
Sbjct: 36  RLPPKRGSSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAY 95

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
           + M  +G RP+  T   ++  C+ L  L  GR+ H   IK  LE +V    +L+  YAK 
Sbjct: 96  RGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKL 155

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV-VEPNDATLNSL 420
            LV+ + +VF     +  V WN ++ G V NGL   A+  F++M   + V+ +   + + 
Sbjct: 156 GLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAA 215

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L A  +     Q   IH Y+IR+G    ++V T L+D+Y KCG +  A  +F+ +P+  +
Sbjct: 216 LAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPL--R 273

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
            +V W+ +I GY ++   + A   F +M   G+Q   VT  + L AC+       G  + 
Sbjct: 274 TVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVH 333

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
            +++   Q        T ++++ G+ G+++ +  +   +  K T   W  ++ A
Sbjct: 334 GYVVRR-QFLPHVVLETALLEMYGKVGKVESSEKIFGKIANK-TLVSWNNMIAA 385


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/604 (36%), Positives = 349/604 (57%), Gaps = 18/604 (2%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G + N   +F++M+   +F++N +++ Y  NG   +++  +  M   G    DN+T+P V
Sbjct: 72  GLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEG-IRSDNFTFPFV 130

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           IKAC +L    +G  +HG+++  GFD+D +V N LI MY+  G ++ A KVFD M    +
Sbjct: 131 IKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDL 190

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSWN+++SGY  +     +L+ F  ML+ G + D   ++S L AC     +  G  IH  
Sbjct: 191 VSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQ 250

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V    L  +I    +L+DMY KCG V+ A  VF+R+  +++V W +MI G          
Sbjct: 251 VIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGG---------- 300

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
                + + + V P+ +T+ +LL +CS    L  G+S+H + I++     +++ETAL+DM
Sbjct: 301 -----MQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDM 355

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y KC  +KL+  VF + ++K  V WN ++A  V N   ++A+++F+ +L E ++P+  T+
Sbjct: 356 YGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITI 415

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            S+LPA A LA   +   IH Y+++ G  S   +S  ++ +Y+KCG L++A + F  +  
Sbjct: 416 ASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVC 475

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
           KD  +V W+ +I  Y +HG G T++  F EM   G +PN  TF S L ACS  GL+DEG 
Sbjct: 476 KD--VVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGW 533

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             FN M   +      +HY C++DLLGR G LDEA   I  MPL PT  +WG+LL A   
Sbjct: 534 GFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRN 593

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           H +V L E+AA+ +  L+ +N G YVLLS +Y+   RW+D + ++ +M E+GL K    S
Sbjct: 594 HNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCS 653

Query: 658 LIEV 661
           ++++
Sbjct: 654 MVDI 657



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 131/464 (28%), Positives = 232/464 (50%), Gaps = 30/464 (6%)

Query: 156 YMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASV 215
           ++  G +  A  +F+ M       WN +I GY  N   +EA+  +  M   G+  D  + 
Sbjct: 68  FVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTF 127

Query: 216 VSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE 275
             V+ ACG L  + +G+ +H  +       ++   N L+DMY+K G +  A  VFD M  
Sbjct: 128 PFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPV 187

Query: 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
           RD+V+W SM++GY ++GD  ++L  F+ M   G + +   + S L ACS  + L+ G  +
Sbjct: 188 RDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEI 247

Query: 336 HAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLA 395
           H   I+  LE +++V+T+LIDMY KC  V  + +VF R   K  V WNA++ G   +   
Sbjct: 248 HCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQED--- 304

Query: 396 RKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGL 455
                       + V P+  T+ +LLP+ +    L +  +IH + IR  FL  + + T L
Sbjct: 305 ------------DKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETAL 352

Query: 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP 515
           +D+Y KCG L+ A  +F++  + +K++V W+ ++A Y  +   + A+ +F+ ++   ++P
Sbjct: 353 VDMYGKCGELKLAEHVFNQ--MNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKP 410

Query: 516 NEVTFTSALHACSHGGLLDEGLDLFNFMLE----NHQTCSRADHYTCIVDLLGRAGRLDE 571
           + +T  S L A +      EG  + +++++    ++   S A     IV +  + G L  
Sbjct: 411 DAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNA-----IVYMYAKCGDLQT 465

Query: 572 AYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
           A +    M  K     W  ++ A  IHG    G  + ++  E+ 
Sbjct: 466 AREFFDGMVCKDV-VSWNTMIMAYAIHG---FGRTSIQFFSEMR 505


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/553 (39%), Positives = 319/553 (57%), Gaps = 4/553 (0%)

Query: 111 NYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD 170
           N+  P V+KAC  ++W +LG  +HG VL  G D D FVGN L+ MY     V+ AR VFD
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
            M E  VVSW+T+I    +N     AL +   M    V P   ++VS++        + M
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 231 GRMIHELVAGGRLGKN--IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
           G+ +H  V      ++  +    AL+DMY KCG +  AR +F+ ++++ VV+WT+MI G 
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 273

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
             +  +     LF  MQ E + PN +T+ SL+  C     L+ G+ LHA+ ++      +
Sbjct: 274 IRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSL 333

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            + TAL+DMY KC+ ++ +  +F  T  +  + W A+L+         +A  LF QM   
Sbjct: 334 ALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTS 393

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            V P   T+ SLL   A+   L     +H Y+ +        ++T L+D+Y+KCG + +A
Sbjct: 394 GVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAA 453

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            ++F  I    +DI +W+ II G+ MHG+GE A+ +F EM + GV+PN++TF   LHACS
Sbjct: 454 GRLF--IEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACS 511

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           H GL+ EG  LF  M+       + +HY C+VDLLGRAG LDEA+++I++MP+KP   VW
Sbjct: 512 HAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVW 571

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
           GAL+ AC +H N +LGE+AA  L E+EPEN G  VL+S +Y+A  RW DA  VR  M   
Sbjct: 572 GALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTV 631

Query: 649 GLRKAPAHSLIEV 661
           G++K P HS+IEV
Sbjct: 632 GMKKEPGHSVIEV 644



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 201/418 (48%), Gaps = 19/418 (4%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSG-------PLFTHLRSSLVRAYGHVSNVRILFD 68
           ++ +V  +A T ++   K +HA++I +        P  T L     +  GH+   R LF+
Sbjct: 198 MVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC-GHLGLARQLFN 256

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN--PDNYTYPIVIKACTDLAW 126
            +++++   +  ++    ++    +  K+F+   R+ E N  P+  T   +I  C     
Sbjct: 257 GLTQKTVVSWTAMIAGCIRSNRLEEGTKLFI---RMQEENIFPNEITMLSLIVECGFTGA 313

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
            +LG  LH  +L  GF +   +   L+ MY    +++ AR +FD+     V+ W  ++S 
Sbjct: 314 LQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSA 373

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
           Y +     +A  +FD M  SGV P   ++VS+L  C     +++G+ +H  +   R+  +
Sbjct: 374 YAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVD 433

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
                ALVDMY KCG +N A  +F     RD+  W ++I G+A++G    AL +F  M+ 
Sbjct: 434 CILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMER 493

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ-NLECEVIVETALIDMYAKCNLVK 365
           +GV+PN +T   LL ACS    +  G+ L    +    L  ++     ++D+  +  L+ 
Sbjct: 494 QGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLD 553

Query: 366 LSFQVFARTS-KKKTVPWNAILAGC-VHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
            + ++      K  T+ W A++A C +H     +  EL    L+E +EP +   N L+
Sbjct: 554 EAHEMIKSMPIKPNTIVWGALVAACRLHKN--PQLGELAATQLLE-IEPENCGYNVLM 608


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/647 (36%), Positives = 368/647 (56%), Gaps = 16/647 (2%)

Query: 23  YAATKSIAGTKQLHAFIITSGPLFTHLRSS-----LVRAYGHVSNVRILFDEMSERSSFL 77
           Y+   +I    ++HA+++  G L   L  S     L  ++G +   R++FD +       
Sbjct: 12  YSLCDNINTLMEMHAYLVVQG-LTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFLS 70

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +  +++ Y  N    D +  F   +R+     DN  +  V+KAC++      G  +H ++
Sbjct: 71  WKVIIRWYFLNSEFRDIVG-FYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQI 129

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           +  G + D+FV   L+ MY   GE++ +R VFD   + +V SW+++I+GY +N  A++ L
Sbjct: 130 VKFG-NPDSFVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDGL 188

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV--AGGRLGKNIAAWNALVD 255
           V+F+ M +  +E +  ++  ++ AC  L  +  G+ +H  +   G  LG  +    AL+D
Sbjct: 189 VLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLV--TALLD 246

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           +Y KCG V +AR VFD +   D+V+WT+MI GY  NG    AL LF   +   V PN +T
Sbjct: 247 LYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVT 306

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
           I S+ S+CS L  L  GRS+H  +IK     + IV  +L+D YAKC + + +  VF   S
Sbjct: 307 IASVFSSCSQLLNLNLGRSIHGLSIKLGSR-DPIVTNSLVDFYAKCQMNRDARYVFETIS 365

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
            +  V WN+I++    NG A +A+ELF QM +  V P+  TL S+L A A L  LQ   +
Sbjct: 366 DRDVVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSS 425

Query: 436 IHCYLIRYGFLSV-VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            H Y ++ G LS  V V T L+  Y+KCG  ESA  IF    +  K  V WS +I+GYG+
Sbjct: 426 FHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFD--GMDQKSTVTWSAMISGYGI 483

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
            G+G  ++S+F +M+++ ++PNE  FTS L ACSH G++ EG  LF  + +++       
Sbjct: 484 QGNGRGSLSIFGDMLKAELKPNEEIFTSILSACSHTGMIGEGWRLFTMICQDYNLVPSTK 543

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HYTC+VDLL RAGRL EA D I+ MP++P  +++GA L  C +H   +LGE+A K + EL
Sbjct: 544 HYTCMVDLLARAGRLKEALDFIQKMPVQPDVSLFGAFLHGCGLHSRFDLGELAIKRMLEL 603

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            P +   YVL+  LY++  RW   + VR++M ++GL K P  SL+E+
Sbjct: 604 HPGDACYYVLMCNLYASDARWSKVKQVRELMKQRGLMKTPGCSLMEM 650


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/653 (35%), Positives = 365/653 (55%), Gaps = 11/653 (1%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSG--PLFTHLRSSLVRAYGH---VSNVRILFDEMSE 72
            L+    + +S+   K++H  I+ S   P    L++ ++  YG    + + R  FD M  
Sbjct: 162 NLILACTSIRSLKYGKKIHDHILKSNCQPDLV-LQNHILNMYGKCGSLKDARKAFDTMQL 220

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           R+   +  ++  Y+QNG  +D++ M++ ML+ G Y PD  T+  +IKAC       LG  
Sbjct: 221 RNVVSWTIMISGYSQNGQENDAIIMYIQMLQSG-YFPDPLTFGSIIKACCIAGDIDLGRQ 279

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           LHG V+ +G+D      N LI+MY  FG++  A  VF  +    ++SW ++I+G+ +  Y
Sbjct: 280 LHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGY 339

Query: 193 AKEALVVFDWMLKSGV-EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
             EAL +F  M + G  +P+     SV  AC  L E E GR IH + A   LG+N+ A  
Sbjct: 340 EIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGC 399

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           +L DMY K G +  A   F ++   D+V+W ++I  ++ +GDV  A+  F  M   G+ P
Sbjct: 400 SLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMP 459

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           + +T  SLL AC S   + +G  +H++ IK  L+ E  V  +L+ MY KC+ +  +F VF
Sbjct: 460 DGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVF 519

Query: 372 ARTSKKKT-VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
              S+    V WNAIL+ C+ +  A +   LF+ ML    +P++ T+ ++L   A LA L
Sbjct: 520 KDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAELASL 579

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
           +    +HC+ ++ G +  V VS  LID+Y+KCGSL+ A  +F     ++ DIV WS +I 
Sbjct: 580 EVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDVFGST--QNPDIVSWSSLIV 637

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           GY   G G  A++LF+ M   GVQPNEVT+   L ACSH GL++EG   +N M       
Sbjct: 638 GYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSACSHIGLVEEGWHFYNTMEIELGIP 697

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
              +H +C+VDLL RAG L EA + I+ M   P   +W  LL +C  HGNV++ E AA+ 
Sbjct: 698 PTREHVSCMVDLLARAGCLYEAENFIKKMGFNPDITMWKTLLASCKTHGNVDIAERAAEN 757

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           + +L+P N    VLLS ++++V  WK+   +R++M + G++K P  S I V++
Sbjct: 758 ILKLDPSNSAALVLLSNIHASVGNWKEVARLRNLMKQMGVQKVPGQSWIAVKD 810



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 148/484 (30%), Positives = 241/484 (49%), Gaps = 4/484 (0%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           ++ TY  +I ACT +   K G  +H  +L +    D  + N ++ MY   G +K ARK F
Sbjct: 156 ESSTYGNLILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAF 215

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           D M   +VVSW  +ISGY +N    +A++++  ML+SG  PD  +  S++ AC    +I+
Sbjct: 216 DTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDID 275

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
           +GR +H  V       ++ A NAL+ MY + G +  A  VF  +S +D+++W SMI G+ 
Sbjct: 276 LGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGFT 335

Query: 290 LNGDVRNALGLFQLMQFEGV-RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
             G    AL LF+ M  +G  +PN    GS+ SAC SL   + GR +H    K  L   V
Sbjct: 336 QLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNV 395

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
               +L DMYAK   +  + + F +      V WNAI+A    +G   +A+  F QM+  
Sbjct: 396 FAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHT 455

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            + P+  T  SLL A      + Q   IH Y+I+ G      V   L+ +Y+KC +L  A
Sbjct: 456 GLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDA 515

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
             +F ++  ++ ++V W+ I++    H        LFK M+ S  +P+ +T T+ L  C+
Sbjct: 516 FNVFKDVS-ENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCA 574

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
               L+ G  +  F +++      +     ++D+  + G L  A D+  +    P    W
Sbjct: 575 ELASLEVGNQVHCFSVKSGLVVDVSVSNR-LIDMYAKCGSLKHARDVFGSTQ-NPDIVSW 632

Query: 589 GALL 592
            +L+
Sbjct: 633 SSLI 636



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 128/454 (28%), Positives = 229/454 (50%), Gaps = 8/454 (1%)

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           +S N+ I+   K  + +EAL  F++  K S ++ + ++  +++ AC  ++ ++ G+ IH+
Sbjct: 122 LSTNSYINLMCKQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIHD 181

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            +       ++   N +++MY KCGS+ +AR  FD M  R+VV+WT MI+GY+ NG   +
Sbjct: 182 HILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQEND 241

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A+ ++  M   G  P+ LT GS++ AC     +  GR LH   IK   +  +I + ALI 
Sbjct: 242 AIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALIS 301

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE-VVEPNDA 415
           MY +   +  +  VF   S K  + W +++ G    G   +A+ LFR M  +   +PN+ 
Sbjct: 302 MYTRFGQIVHASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEF 361

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
              S+  A   L + +    IH    ++G    V     L D+Y+K G L SA + F + 
Sbjct: 362 IFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRAFYQ- 420

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
            I+  D+V W+ IIA +   G    A+  F +M+ +G+ P+ +TF S L AC     +++
Sbjct: 421 -IESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQ 479

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           G  + +++++       A     ++ +  +   L +A+++ + +        W A+L AC
Sbjct: 480 GTQIHSYIIKIGLD-KEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSAC 538

Query: 596 VIHGNVELGEVAAKWLFELEPEN-PGNYVLLSKL 628
           + H   + GEV   +   L  EN P N  + + L
Sbjct: 539 LQHK--QAGEVFRLFKLMLFSENKPDNITITTIL 570


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 247/676 (36%), Positives = 359/676 (53%), Gaps = 38/676 (5%)

Query: 19   LVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAYGHVSNV---RILFDEMSE 72
            +++  AA   +   KQ+HA +   G   P    + +SLV  YG   ++   R +FD++ +
Sbjct: 336  VLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPD 395

Query: 73   RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL-AWRKLGI 131
            R    +N+++    +      SL +F  ML     +P ++T   V  AC+ +    +LG 
Sbjct: 396  RDHVSWNSMIATLCRFEEWELSLHLFRLMLS-ENVDPTSFTLVSVAHACSHVRGGVRLGK 454

Query: 132  ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
             +H   L  G D+ T+  N L+ MY   G V  A+ +F       +VSWNT+IS   +N 
Sbjct: 455  QVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQND 513

Query: 192  YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAW 250
              +EAL+    M+  GV PD  ++ SVLPAC  L+ + +GR IH   +  G L +N    
Sbjct: 514  RFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVG 573

Query: 251  NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG-V 309
             ALVDMY  C    + RLVFD +  R V  W +++ GYA N     AL LF  M  E   
Sbjct: 574  TALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEF 633

Query: 310  RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
             PN+ T  S+L AC           +H + +K+    +  V+ AL+DMY++   V++S  
Sbjct: 634  CPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKT 693

Query: 370  VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE------------------ 411
            +F R +K+  V WN ++ GC+  G    A+ L  +M     E                  
Sbjct: 694  IFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFK 753

Query: 412  PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
            PN  TL ++LP  A LA L +   IH Y ++      V V + L+D+Y+KCG L  A ++
Sbjct: 754  PNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRV 813

Query: 472  FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG------VQPNEVTFTSALH 525
            F ++PI++  ++ W+V+I  YGMHG GE A+ LF+ M   G      ++PNEVT+ +   
Sbjct: 814  FDQMPIRN--VITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFA 871

Query: 526  ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
            ACSH G++DEGL LF+ M  +H    R DHY C+VDLLGR+GR+ EAY+LI TMP     
Sbjct: 872  ACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNK 931

Query: 586  A-VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
               W +LLGAC IH +VE GE+AAK LF LEP    +YVL+S +YS+   W  A  VR  
Sbjct: 932  VDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKK 991

Query: 645  MDEKGLRKAPAHSLIE 660
            M E G+RK P  S IE
Sbjct: 992  MKEMGVRKEPGCSWIE 1007



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 160/527 (30%), Positives = 253/527 (48%), Gaps = 50/527 (9%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGF--DMDTFVGNCLIAMYMNFGEVKAARK 167
           DN+ +P V+KA   +    LG  +H  V   G        V N L+ MY   G++ AAR+
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQ 388

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VFD + +   VSWN++I+   +    + +L +F  ML   V+P   ++VSV  AC +++ 
Sbjct: 389 VFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVR- 447

Query: 228 IEMGRMIHELVAGGRLGKNIAAW------------NALVDMYVKCGSVNEARLVFDRMSE 275
                       G RLGK + A+            NALV MY + G VN+A+ +F     
Sbjct: 448 -----------GGVRLGKQVHAYTLRNGDLRTYTNNALVTMYARLGRVNDAKALFGVFDG 496

Query: 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
           +D+V+W ++I+  + N     AL    LM  +GVRP+ +T+ S+L ACS L  L+ GR +
Sbjct: 497 KDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREI 556

Query: 336 HAWTIKQ-NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
           H + ++  +L     V TAL+DMY  C   K    VF    ++    WNA+LAG   N  
Sbjct: 557 HCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEF 616

Query: 395 ARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
             +A+ LF +M+ E    PN  T  S+LPA            IH Y+++ GF     V  
Sbjct: 617 DDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQN 676

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ--- 510
            L+D+YS+ G +E +  IF    +  +DIV W+ +I G  + G  + A++L  EM +   
Sbjct: 677 ALMDMYSRMGRVEISKTIFGR--MNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQG 734

Query: 511 -------------SGV--QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
                         GV  +PN VT  + L  C+    L +G ++  + ++       A  
Sbjct: 735 EDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVG 794

Query: 556 YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
            + +VD+  + G L+ A  +   MP++     W  L+ A  +HG  E
Sbjct: 795 -SALVDMYAKCGCLNLASRVFDQMPIRNV-ITWNVLIMAYGMHGKGE 839



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/434 (28%), Positives = 212/434 (48%), Gaps = 14/434 (3%)

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
           S   W  L+     ++  ++A+  +  ML +   PD  +  +VL A   + ++ +G+ IH
Sbjct: 294 SPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIH 353

Query: 236 ELV--AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
             V   G     ++A  N+LV+MY KCG +  AR VFD + +RD V+W SMI       +
Sbjct: 354 AHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEE 413

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY-YLKRGRSLHAWTIKQNLECEVIVET 352
              +L LF+LM  E V P S T+ S+  ACS +   ++ G+ +HA+T++ N +       
Sbjct: 414 WELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLR-NGDLRTYTNN 472

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           AL+ MYA+   V  +  +F     K  V WN +++    N    +A+     M+V+ V P
Sbjct: 473 ALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRP 532

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYG-FLSVVEVSTGLIDIYSKCGSLESAHKI 471
           +  TL S+LPA + L  L+    IHCY +R G  +    V T L+D+Y  C   +    +
Sbjct: 533 DGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLV 592

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV-QSGVQPNEVTFTSALHACSHG 530
           F    +  + + VW+ ++AGY  +   + A+ LF EM+ +S   PN  TF S L AC   
Sbjct: 593 FDG--VVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRC 650

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
            +  +   +  ++++        D Y    ++D+  R GR++ +  +   M  K     W
Sbjct: 651 KVFSDKEGIHGYIVKRGFG---KDKYVQNALMDMYSRMGRVEISKTIFGRMN-KRDIVSW 706

Query: 589 GALLGACVIHGNVE 602
             ++  C++ G  +
Sbjct: 707 NTMITGCIVCGRYD 720


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/606 (35%), Positives = 350/606 (57%), Gaps = 3/606 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G + + R LF  + ER+   +N +   Y Q+    +++ +F  M+R G   P+ ++  I+
Sbjct: 131 GLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSG-IMPNEFSISII 189

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + AC  L    LG  +HG +L  G D+D F  N L+ MY   GE++ A  VF  +    V
Sbjct: 190 LNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDV 249

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSWN +I+G   +     AL++ D M  SG  P+  ++ S L AC  +   E+GR +H  
Sbjct: 250 VSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSS 309

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +       ++ A   LVDMY KC  +++AR  +D M ++D++ W ++I+GY+  GD  +A
Sbjct: 310 LIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDA 369

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + LF  M  E +  N  T+ ++L + +SL  +K  + +H  +IK  +  +  V  +L+D 
Sbjct: 370 VSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDT 429

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y KCN +  + ++F   + +  V + +++      G   +A++L+ QM    ++P+    
Sbjct: 430 YGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFIC 489

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +SLL A A L+  +Q   +H + I++GF+  +  S  L+++Y+KCGS+E A + FSEIP 
Sbjct: 490 SSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIP- 548

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            ++ IV WS +I GY  HGHG+ A+ LF +M++ GV PN +T  S L AC+H GL++EG 
Sbjct: 549 -NRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGK 607

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             F  M          +HY C++DLLGR+G+L+EA +L+ ++P +    VWGALLGA  I
Sbjct: 608 QYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARI 667

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           H N+ELG+ AAK LF+LEPE  G +VLL+ +Y++   W++   VR  M +  ++K P  S
Sbjct: 668 HKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMS 727

Query: 658 LIEVRN 663
            IE+++
Sbjct: 728 WIEIKD 733



 Score =  295 bits (754), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 191/611 (31%), Positives = 319/611 (52%), Gaps = 29/611 (4%)

Query: 34  QLHAFIITSGPLFTH---LRSSLVRAYGHVSN---VRILFDEMSERSSFLYNTVMKMYAQ 87
           +LHA +I  G  F+    LR+ LV  Y         R L DE SE     +++++  Y Q
Sbjct: 2   ELHAHLIKFG--FSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQ 59

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NG   ++L +F  M  LG    + +T+P V+KAC+      +G  +HG  ++TGF+ D F
Sbjct: 60  NGFVEEALLVFNEMCLLG-VKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGF 118

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           V N L+ MY   G +  +R++F  + E +VVSWN L S Y ++    EA+ +F  M++SG
Sbjct: 119 VANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSG 178

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           + P+  S+  +L AC  L+E ++GR IH L+    L  +  + NALVDMY K G +  A 
Sbjct: 179 IMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAV 238

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VF  ++  DVV+W ++I G  L+     AL L   M+  G RPN  T+ S L AC+++ 
Sbjct: 239 AVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMG 298

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
           + + GR LH+  IK +   ++     L+DMY+KC ++  + + +    KK  + WNA+++
Sbjct: 299 FKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALIS 358

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G    G    AV LF +M  E ++ N  TL+++L + A L  ++    IH   I+ G  S
Sbjct: 359 GYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYS 418

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
              V   L+D Y KC  ++ A KIF E     +D+V ++ +I  Y  +G GE A+ L+ +
Sbjct: 419 DFYVINSLLDTYGKCNHIDEASKIFEERTW--EDLVAYTSMITAYSQYGDGEEALKLYLQ 476

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDL------FNFMLENHQTCSRADHYTCIVD 561
           M  + ++P+    +S L+AC++    ++G  L      F FM +   + S       +V+
Sbjct: 477 MQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNS-------LVN 529

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN-PG 620
           +  + G +++A      +P +     W A++G    HG+   G+ A +   ++  +  P 
Sbjct: 530 MYAKCGSIEDADRAFSEIPNRGI-VSWSAMIGGYAQHGH---GKEALRLFNQMLRDGVPP 585

Query: 621 NYVLLSKLYSA 631
           N++ L  +  A
Sbjct: 586 NHITLVSVLCA 596



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 2/95 (2%)

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
           M +H +LI++GF     +   L+ +YSKC     A K+  E    + D+V WS +++GY 
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESS--ELDVVSWSSLLSGYV 58

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            +G  E A+ +F EM   GV+ NE TF S L ACS
Sbjct: 59  QNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACS 93


>gi|255565124|ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537116|gb|EEF38749.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 611

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/658 (35%), Positives = 362/658 (55%), Gaps = 60/658 (9%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG----PLFTHLRSSLVRAYG---HVSNVRILFDEMS 71
           ++Q  +  KS+   KQ+H  I  SG    P    + + L++ Y    H+ + + LFD+M 
Sbjct: 1   MLQLCSNLKSLHAGKQIHQQITVSGWGKDPF---MLTKLIQMYADCDHLFSAQRLFDKMP 57

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
           + + + +  +   Y ++G  +D      G ++  +  PDNY +P V++ACT L W + GI
Sbjct: 58  QPNVYAWTAIFGFYLRHGM-YDKCVQNYGFMKYSDVLPDNYVFPKVLRACTQLLWFEGGI 116

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H  V++ G + +  V N LI MY+  G  ++AR VF+ M E  + SWN++ISGY  N 
Sbjct: 117 WIHKDVIVCGCESNLQVCNSLIDMYVKCGNARSARLVFEEMEERDLFSWNSMISGYVSNG 176

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
            A  A+ + + M   G EPD                                   +  WN
Sbjct: 177 LADLAVELLNCMRLDGFEPD-----------------------------------VVTWN 201

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF-EGVR 310
            L+D Y + G  +EA  V  ++ + ++++WT++I+ Y+  G+   +L +FQ M   E V 
Sbjct: 202 TLMDAYCQMGRFDEAWEVLKQIEQPNIISWTTLISSYSKIGEHDMSLRVFQDMIIREVVS 261

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET----ALIDMYAKCNLVKL 366
           P+   + S+L +C  +  L+ G+ +H +  K  +E   +  +    AL+ MYAKC  ++ 
Sbjct: 262 PDLDCLCSVLVSCRHIGALRSGKEIHGYGTK--METNTVFYSSAGAALLTMYAKCGRIQD 319

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           +  VF    K   V WNA++ G V   L ++A+E FR+M    ++ +  T++++LP    
Sbjct: 320 AINVFELMDKSDIVTWNAMILGFVELDLGKQAIECFREMQRMDIKNDQTTISTILP---- 375

Query: 427 LADLQQAMNIHCYLIRYGFLS-VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
           + DLQ    IH Y+ +   LS VV V   +I +Y KCG + SA+ IF  +P  +KD+V W
Sbjct: 376 VCDLQYGNPIHAYVRKSITLSSVVTVWNAVIHMYCKCGCVRSAYTIFCSMP--NKDVVSW 433

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I G+GMHGHG+ A+ L KEM+ SG+ PN  TFTS L ACSH GL+DEG  LF  M E
Sbjct: 434 NTMIGGFGMHGHGQAALKLLKEMILSGIFPNSTTFTSVLSACSHSGLVDEGFRLFRSMTE 493

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
           ++    R +HY+CIVD+L RAG+  +A   I  MPL+P  ++WGALL AC  + N++ G 
Sbjct: 494 DYSITPRMEHYSCIVDMLARAGQFADAVTFIHKMPLEPDKSIWGALLAACRAYQNLDFGR 553

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +AA+ L  +EP+  G+YV LS +Y+   RW DA  VR  ++ KGL K    SLIE R+
Sbjct: 554 LAAEQLIRMEPKCAGHYVTLSNIYARAGRWDDAGRVRKEIEGKGLVKPSGQSLIETRD 611


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/619 (36%), Positives = 350/619 (56%), Gaps = 8/619 (1%)

Query: 48   HLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL 104
            ++ SSL+  Y     +   + +FD + ER+  L+N ++  YAQNG +   +K+F  M   
Sbjct: 385  YVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGC 444

Query: 105  GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA 164
            G + PD +TY  ++ AC  L   ++G  LH  ++   F+ + FV N L+ MY   G ++ 
Sbjct: 445  G-FWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEE 503

Query: 165  ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
            AR+ F+ +     VSWN +I GY +     EA  +F  M+  G+ PD  S+ S+L  C  
Sbjct: 504  ARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCAN 563

Query: 225  LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
            L+ +E G  +H  +    L   + A ++L+DMYVKCG++  AR VF  M  R VV+  ++
Sbjct: 564  LQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAI 623

Query: 285  INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
            I GYA N D+  A+ LFQ MQ EG+ P+ +T  SLL AC+  Y L  GR +H    K+ L
Sbjct: 624  IAGYAQN-DLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGL 682

Query: 345  ECE-VIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELF 402
              +   +  +L+ MY        +  +F+     K T+ W AI++G   NG + +A++L+
Sbjct: 683  LYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLY 742

Query: 403  RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
            ++M      P+ AT  S+L A +ILA L     IH  +   G  S     + ++D+Y+KC
Sbjct: 743  QEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKC 802

Query: 463  GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
            G ++S+ ++F E+  K+ D++ W+ +I G+  +G+ E A+ +F EM  + ++P++VTF  
Sbjct: 803  GDMKSSVQVFEEMGSKN-DVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLG 861

Query: 523  ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
             L ACSH G + EG ++F+ M+ +++   R DH  C++DLLGR G L EA + I  +  +
Sbjct: 862  VLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFE 921

Query: 583  PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642
            P   +W  LLGAC IHG+   G  AA+ L ELEPEN   YVLLS +Y+A   W +  +VR
Sbjct: 922  PNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDEVNSVR 981

Query: 643  DVMDEKGLRKAPAHSLIEV 661
              M EKGLRK P  S I V
Sbjct: 982  RAMREKGLRKLPGCSWIVV 1000



 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 197/671 (29%), Positives = 315/671 (46%), Gaps = 110/671 (16%)

Query: 49  LRSSLVRAYGHVSNVRIL---FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           L S++V  Y    NV      F+++ +R    +N+V+ MY++ G+    +  F G L+  
Sbjct: 118 LGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCF-GSLQNC 176

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF----------------------- 142
             +P+ +TY IV+ +C  L    LG  +H  V+  GF                       
Sbjct: 177 GVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDA 236

Query: 143 --------DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE-------------------- 174
                   D DT     +IA Y+  G  + A KVF+ M +                    
Sbjct: 237 RKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGL 296

Query: 175 ---------------HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVL 219
                           +VV+WN +ISG+ K     EA+  F  M K+GV+   +++ SVL
Sbjct: 297 GRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVL 356

Query: 220 PACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVV 279
            A   L+ +  G ++H       L  N+   ++L++MY KC  +  A+ VFD + ER++V
Sbjct: 357 SAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLV 416

Query: 280 TWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWT 339
            W +M+ GYA NG     + LF  M+  G  P+  T  S+LSAC+ L  L+ GR LH++ 
Sbjct: 417 LWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFI 476

Query: 340 IKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAV 399
           IK N E  + VE  L+DMYAKC  ++ + Q F     +  V WNAI+ G V      +A 
Sbjct: 477 IKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAF 536

Query: 400 ELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459
            +FR+M+++ + P++ +L S+L   A L  L+Q   +HC+L++ G  + +   + LID+Y
Sbjct: 537 NMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMY 596

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
            KCG++E+A  +FS +P   + +V  + IIAGY  +   E A+ LF+EM   G+ P+E+T
Sbjct: 597 VKCGAIEAARYVFSCMP--SRSVVSMNAIIAGYAQNDLVE-AIDLFQEMQNEGLNPSEIT 653

Query: 520 FTSALHACS----------------HGGLLDEGLDLFN----FMLENHQTCSRAD----- 554
           F S L AC+                  GLL +G D        M  N Q  + AD     
Sbjct: 654 FASLLDACTGPYKLNLGRQIHCLIQKRGLLYDG-DFLGVSLLVMYMNSQRKTDADILFSE 712

Query: 555 --------HYTCIVDLLGRAGRLDEAYDLIRTM---PLKPTHAVWGALLGACVIHGNVEL 603
                    +T I+    + G  +EA  L + M     +P  A + ++L AC I  ++  
Sbjct: 713 FQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGD 772

Query: 604 GEVAAKWLFEL 614
           G +    +F +
Sbjct: 773 GRMIHSLIFHV 783



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 226/449 (50%), Gaps = 41/449 (9%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H + L  GF     +G+ ++ +Y   G V+ A K F+ + +  +++WN+++S Y +   
Sbjct: 103 IHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGS 162

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            ++ +  F  +   GV P+  +   VL +C  L +I++G+ +H  V       N     +
Sbjct: 163 LEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGS 222

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+DMY KCGS+ +AR +FD + + D V+WT+MI GY   G    AL +F+ MQ  G+ P+
Sbjct: 223 LIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPD 282

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            +   ++++AC  L  L                               C+L       F 
Sbjct: 283 QVAFVTVITACVGLGRLDDA----------------------------CDL-------FV 307

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           +      V WN +++G V  G   +A++ F+ M    V+   +TL S+L A A L  L  
Sbjct: 308 QMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNY 367

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
            + +H   I+ G  S V V + LI++Y+KC  +E+A K+F    + ++++V+W+ ++ GY
Sbjct: 368 GLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFD--ALDERNLVLWNAMLGGY 425

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
             +G+    + LF EM   G  P+E T+TS L AC+    L+ G  L +F+++++   + 
Sbjct: 426 AQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNL 485

Query: 553 ADHYTCIVDLLGRAGRLDEA---YDLIRT 578
               T +VD+  + G L+EA   ++ IR 
Sbjct: 486 FVENT-LVDMYAKCGALEEARQQFEFIRN 513



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 158/326 (48%), Gaps = 13/326 (3%)

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           +  +++HA T+K     +  + +A++D+YAKC  V+ + + F +  K+  + WN++L+  
Sbjct: 98  RTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMY 157

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
              G   + +  F  +    V PN  T   +L + A L D+     +HC +I+ GF    
Sbjct: 158 SRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNS 217

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
                LID+YSKCGSL  A KIF    + D D V W+ +IAGY   G  E A+ +F++M 
Sbjct: 218 FCEGSLIDMYSKCGSLVDARKIFD--AVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQ 275

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           + G+ P++V F + + AC   G LD+  DLF  M   +        +  ++    + G  
Sbjct: 276 KLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVA-----WNVMISGHVKRGCD 330

Query: 570 DEAYDLIRTM---PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV--L 624
            EA D  + M    +K T +  G++L A      +  G +      + +  N   YV   
Sbjct: 331 IEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIK-QGLNSNVYVGSS 389

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGL 650
           L  +Y+   + + A+ V D +DE+ L
Sbjct: 390 LINMYAKCEKMEAAKKVFDALDERNL 415


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/611 (36%), Positives = 352/611 (57%), Gaps = 5/611 (0%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +G++ +   +F +MSER+ F +N ++  YA+ G   +++ ++  ML +G   PD YT+P 
Sbjct: 142 FGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPC 201

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           V++ C  +     G  +H  V+  G+++D  V N LI MY+  G+VK+AR +FD M    
Sbjct: 202 VLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRD 261

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           ++SWN +ISGYF+N    E L +F  M    V+PD  ++ SV+ AC  L +  +GR IH 
Sbjct: 262 IISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHA 321

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            V       +I+  N+L  MY+  GS  EA  +F RM  +D+V+WT+MI+GY  N     
Sbjct: 322 YVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDK 381

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A+  +++M  + V+P+ +T+ ++LSAC++L  L  G  LH   IK  L   VIV   LI+
Sbjct: 382 AIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLIN 441

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY+KC  +  +  +F    +K  + W +I+AG   N    +A+   RQM +  ++PN  T
Sbjct: 442 MYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKM-TLQPNAIT 500

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           L + L A A +  L     IH +++R G      +   L+D+Y +CG + +A   +S+  
Sbjct: 501 LTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTA---WSQFN 557

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
            + KD+  W++++ GY   G G   V LF  MV+S V+P+E+TF S L  CS   ++ +G
Sbjct: 558 SQKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQG 617

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
           L  F+ M E++       HY C+VDLLGRAG L EA+  I+ MP+ P  AVWGALL AC 
Sbjct: 618 LMYFSKM-EDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACR 676

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           IH  ++LGE++A+ +FEL+ ++ G Y+LL  LY+   +W++   VR +M E GL      
Sbjct: 677 IHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGC 736

Query: 657 SLIEVRNILTA 667
           S +EV+  + A
Sbjct: 737 SWVEVKGKVHA 747



 Score =  238 bits (606), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 160/508 (31%), Positives = 267/508 (52%), Gaps = 12/508 (2%)

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NG   +++K+   M  L     D   +  +++ C     ++ G  ++   L +   +   
Sbjct: 72  NGKLEEAMKLLNSMQEL-RVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVE 130

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML-KS 206
           +GN  +AM++ FG +  A  VF  M E ++ SWN L+ GY K  Y  EA+ ++  ML   
Sbjct: 131 LGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVG 190

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           GV+PD  +   VL  CG + ++  G+ +H  V       +I   NAL+ MYVKCG V  A
Sbjct: 191 GVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSA 250

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
           RL+FDRM  RD+++W +MI+GY  NG     L LF  M+   V P+ +T+ S++SAC  L
Sbjct: 251 RLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELL 310

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
              + GR +HA+ I      ++ V  +L  MY      + + ++F+R  +K  V W  ++
Sbjct: 311 GDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMI 370

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           +G  +N L  KA++ +R M  + V+P++ T+ ++L A A L DL   + +H   I+   +
Sbjct: 371 SGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLI 430

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           S V V+  LI++YSKC  ++ A  IF  IP   K+++ W+ IIAG  ++     A+   +
Sbjct: 431 SYVIVANNLINMYSKCKCIDKALDIFHNIP--RKNVISWTSIIAGLRLNNRCFEALIFLR 488

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLG 564
           +M  + +QPN +T T+AL AC+  G L  G ++   +L   +T    D +    ++D+  
Sbjct: 489 QMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVL---RTGVGLDDFLPNALLDMYV 544

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           R GR++ A+    +   K     W  LL
Sbjct: 545 RCGRMNTAWSQFNSQ--KKDVTSWNILL 570



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 117/404 (28%), Positives = 208/404 (51%), Gaps = 12/404 (2%)

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243
           + G   N   +EA+ + + M +  V  D    V+++  C + +  E G  ++ +      
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMS 125

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
              +   NA + M+V+ G++ +A  VF +MSER++ +W  ++ GYA  G    A+ L+  
Sbjct: 126 SLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHR 185

Query: 304 MQF-EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
           M +  GV+P+  T   +L  C  +  L RG+ +H   ++   E ++ V  ALI MY KC 
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCG 245

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            VK +  +F R  ++  + WNA+++G   NG+  + +ELF  M    V+P+  TL S++ 
Sbjct: 246 DVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVIS 305

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A  +L D +   +IH Y+I  GF   + V   L  +Y   GS   A K+FS   ++ KDI
Sbjct: 306 ACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSR--MERKDI 363

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
           V W+ +I+GY  +   + A+  ++ M Q  V+P+E+T  + L AC+  G LD G++L   
Sbjct: 364 VSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKL 423

Query: 543 MLENHQTCSRADHYTCI----VDLLGRAGRLDEAYDLIRTMPLK 582
            ++     +R   Y  +    +++  +   +D+A D+   +P K
Sbjct: 424 AIK-----ARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRK 462


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/590 (36%), Positives = 339/590 (57%), Gaps = 4/590 (0%)

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
           +FL+N +++ +A  G    +L  + GML  G   PD +T+P+V+K C  L     G A H
Sbjct: 72  AFLHNVMIRGFADAGLPAGALAAYRGMLEDGA-RPDRFTFPVVVKCCARLGGLDEGRAAH 130

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           G V+  G + D +  N L+A Y   G V+ A +VFD M    +V+WN ++ GY  N    
Sbjct: 131 GMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGS 190

Query: 195 EALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
            AL  F  M  +  V+ D   +++ L AC        G+ IH  V    L ++I    +L
Sbjct: 191 LALACFQEMHDALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSL 250

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           +DMY KCG V  AR VF  M  R VVTW  MI GYALN     A   F  M+ EG++   
Sbjct: 251 LDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEV 310

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
           +T  +LL+AC+       GRS+H + +++     V++ETAL++MY K   V+ S ++F +
Sbjct: 311 VTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGK 370

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
            + K  V WN ++A  ++  +  +A+ LF ++L + + P+  T+++++PA+ +L  L+  
Sbjct: 371 IANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHC 430

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             IH Y+I  G+     +   ++ +Y++ G + ++ +IF ++    KD++ W+ +I GY 
Sbjct: 431 RQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKM--VSKDVISWNTMIMGYA 488

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
           +HG G+TA+ +F EM  +G+QPNE TF S L ACS  GL+DEG   FN ML+ +    + 
Sbjct: 489 IHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQI 548

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
           +HY C+ DLLGR G L E    I +MP+ PT  VWG+LL A     ++++ E AA+ +F+
Sbjct: 549 EHYGCMTDLLGREGDLREVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQ 608

Query: 614 LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           LE +N G Y++LS +Y+   RW+D E VR +M EKGLR+    SL+E+ +
Sbjct: 609 LEHDNTGCYIVLSSMYADAGRWEDVERVRLLMKEKGLRRTEPISLVELHS 658



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/445 (26%), Positives = 207/445 (46%), Gaps = 5/445 (1%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           +SLV  Y   G V +   +FD M  R    +N ++  Y  NG    +L  F  M    E 
Sbjct: 146 NSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEV 205

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
             D+      + AC        G  +HG V+  G + D  VG  L+ MY   GEV  AR 
Sbjct: 206 QHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARS 265

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VF  M   +VV+WN +I GY  N    EA   F  M   G++ +  + +++L AC   + 
Sbjct: 266 VFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTES 325

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
              GR +H  V   +   ++    AL++MY K G V  +  +F +++ + +V+W +MI  
Sbjct: 326 SLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAA 385

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y        A+ LF  +  + + P+  T+ +++ A   L  L+  R +H++ I       
Sbjct: 386 YMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAEN 445

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
            ++  A++ MYA+   V  S ++F +   K  + WN ++ G   +G  + A+E+F +M  
Sbjct: 446 TLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKY 505

Query: 408 EVVEPNDATLNSLLPAYAILADLQQA-MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
             ++PN++T  S+L A ++   + +  M+ +  L  YG +  +E    + D+  + G L 
Sbjct: 506 NGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLR 565

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAG 491
              +    +PI D    VW  ++  
Sbjct: 566 EVLQFIESMPI-DPTSRVWGSLLTA 589



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 166/354 (46%), Gaps = 5/354 (1%)

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
           RL     +  +LV      G ++EA      +   D      MI G+A  G    AL  +
Sbjct: 36  RLPPKRGSSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAY 95

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
           + M  +G RP+  T   ++  C+ L  L  GR+ H   IK  LE +V    +L+  YAK 
Sbjct: 96  RGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKL 155

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV-VEPNDATLNSL 420
            LV+ + +VF     +  V WN ++ G V NGL   A+  F++M   + V+ +   + + 
Sbjct: 156 GLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAA 215

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L A  +     Q   IH Y+IR+G    ++V T L+D+Y KCG +  A  +F+ +P+  +
Sbjct: 216 LAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPL--R 273

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
            +V W+ +I GY ++   + A   F +M   G+Q   VT  + L AC+       G  + 
Sbjct: 274 TVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVH 333

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
            +++   Q        T ++++ G+ G+++ +  +   +  K T   W  ++ A
Sbjct: 334 GYVVRR-QFLPHVVLETALLEMYGKVGKVESSEKIFGKIANK-TLVSWNNMIAA 385



 Score = 39.7 bits (91), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 10/125 (8%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERS 74
           +V  +    S+   +Q+H++II  G    T + ++++  Y   G V   R +FD+M  + 
Sbjct: 417 VVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKD 476

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT-----DLAWRKL 129
              +NT++  YA +G    +L+MF  M +     P+  T+  V+ AC+     D  W   
Sbjct: 477 VISWNTMIMGYAIHGQGKTALEMFDEM-KYNGLQPNESTFVSVLTACSVSGLVDEGWMHF 535

Query: 130 GIALH 134
            + L 
Sbjct: 536 NLMLQ 540


>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Brachypodium distachyon]
          Length = 782

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/597 (36%), Positives = 340/597 (56%), Gaps = 13/597 (2%)

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
           S   +FL+N V++ +A  G    +L  +  ML  G   PD +T+P+V+K C  L   + G
Sbjct: 68  SSPDAFLHNVVIRGFADAGLPEAALAAYRAMLAAGA-RPDRFTFPVVVKCCARLGALEEG 126

Query: 131 IALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
            A H   +  G    + + GN L+A Y   G V  A +VFD M    +V+WN+++ GY  
Sbjct: 127 RAAHSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVS 186

Query: 190 NAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           N     AL  F  M +   V+ D   +++ L AC     +  GR +H  V    L +++ 
Sbjct: 187 NGLGALALDCFREMHEGLQVQHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQDVK 246

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
              +L+DMY KCG++  A  +F  M  R VVTW  MI GYALNG    A   F  M+ EG
Sbjct: 247 VGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEG 306

Query: 309 VRPNSLTIGSLLSAC----SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
            +   +T  +LL+AC    SSLY    GRS+H +  +      V++ETAL++MY+K   V
Sbjct: 307 HQVEVVTAINLLAACAQTESSLY----GRSVHGYVTRSQFLPHVVLETALLEMYSKVGKV 362

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
           K S  +F + + K  V WN ++A  ++  +  +A+ LF ++L + + P+  T+++++PA+
Sbjct: 363 KSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAF 422

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
            +L  L+Q   +H Y++R  +     V+  ++ +Y++CG + S+ KIF ++    KD++ 
Sbjct: 423 VLLGLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGDVVSSRKIFDKM--AGKDVIS 480

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+ II GY +HG G+ A+ +F EM  +G+QPNE TF S L ACS  G+ DEG   FN M 
Sbjct: 481 WNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLTACSVSGMADEGWIQFNLMQ 540

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
            ++    + +HY C+ DLLGRAG L E    I ++P+ PT  +WG+LL A     ++++ 
Sbjct: 541 RDYGIIPQIEHYGCMTDLLGRAGDLREVLKFIESIPITPTFRIWGSLLTASRNRNDIDIA 600

Query: 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           E AA+ +FELE +N G YV+LS +Y+   RW+D + +R  M EKGLR+  A S++E+
Sbjct: 601 EYAAERIFELEHDNTGCYVILSSMYADAGRWEDVQRIRSSMMEKGLRRTDARSIVEL 657



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/422 (26%), Positives = 202/422 (47%), Gaps = 3/422 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V++   +FD M  R    +N+++  Y  NG    +L  F  M    +   D       
Sbjct: 157 GMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMHEGLQVQHDGVGIIAA 216

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + AC   +    G  +H  V+  G + D  VG  L+ MY   G + +A  +F  M   +V
Sbjct: 217 LAACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTV 276

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V+WN +I GY  N   +EA   F  M   G + +  + +++L AC   +    GR +H  
Sbjct: 277 VTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGY 336

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V   +   ++    AL++MY K G V  +  +F +M+ + +V+W +MI  Y        A
Sbjct: 337 VTRSQFLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEA 396

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + LF  +  + + P+  T+ +++ A   L  L++ R +H++ ++ +     +V  A++ M
Sbjct: 397 ITLFLELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAVMHM 456

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YA+C  V  S ++F + + K  + WN I+ G   +G  + A+E+F +M    ++PN++T 
Sbjct: 457 YARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNESTF 516

Query: 418 NSLLPAYAI--LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
            S+L A ++  +AD +  +  +     YG +  +E    + D+  + G L    K    I
Sbjct: 517 VSVLTACSVSGMAD-EGWIQFNLMQRDYGIIPQIEHYGCMTDLLGRAGDLREVLKFIESI 575

Query: 476 PI 477
           PI
Sbjct: 576 PI 577



 Score = 40.0 bits (92), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 5/94 (5%)

Query: 33  KQLHAFIIT----SGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+H++I+        L T+    +    G V + R +FD+M+ +    +NT++  YA +
Sbjct: 432 RQMHSYIVRLDYGENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIH 491

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
           G    +L+MF  M   G   P+  T+  V+ AC+
Sbjct: 492 GQGKIALEMFSEMKSNG-LQPNESTFVSVLTACS 524


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/635 (35%), Positives = 356/635 (56%), Gaps = 11/635 (1%)

Query: 34  QLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           QL +F++ SG     ++ + L+  Y   G++   R++FD + E+S+  + T++    + G
Sbjct: 169 QLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMG 228

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
            S+ SL++F  ++      PD Y    V+ AC+ L + + G  +H  +L  G +MD  + 
Sbjct: 229 RSYVSLQLFYQLME-DNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLM 287

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N LI  Y+  G V AA K+F+ M   +++SW TL+SGY +NA  KEA+ +F  M K G++
Sbjct: 288 NVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLK 347

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PD  +  S+L +C  L  +  G  +H       LG +    N+L+DMY KC  + +AR V
Sbjct: 348 PDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKV 407

Query: 270 FDRMSERDVVTWTSMINGYALNG---DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
           FD  +  DVV + +MI GY+  G   ++  AL +F+ M+F  +RP+ LT  SLL A +SL
Sbjct: 408 FDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASL 467

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             L   + +H    K  L  ++   +ALID+Y+ C  +K S  VF     K  V WN++ 
Sbjct: 468 TSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMF 527

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           AG V      +A+ LF ++ +    P++ T  +++ A   LA +Q     HC L++ G  
Sbjct: 528 AGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLE 587

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
               ++  L+D+Y+KCGS E AHK F       +D+V W+ +I+ Y  HG G+ A+ + +
Sbjct: 588 CNPYITNALLDMYAKCGSPEDAHKAFDSAA--SRDVVCWNSVISSYANHGEGKKALQMLE 645

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           +M+  G++PN +TF   L ACSH GL+++GL  F  ML         +HY C+V LLGRA
Sbjct: 646 KMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRA 704

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           GRL++A +LI  MP KP   VW +LL  C   GNVEL E AA+     +P++ G++ +LS
Sbjct: 705 GRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLS 764

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            +Y++   W +A+ VR+ M  +G+ K P  S I +
Sbjct: 765 NIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGI 799



 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 200/675 (29%), Positives = 333/675 (49%), Gaps = 47/675 (6%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSER 73
           +L+Q  A+   +     +H  II  G  L T+L + L+  Y   G +   R +F++M ER
Sbjct: 49  RLLQLRASDDLLHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPER 108

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK--LGI 131
           +   ++T++     +G   +SL +FL   R  + +P+ Y     I+AC+ L  R   +  
Sbjct: 109 NLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVF 168

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            L   ++ +GFD D +VG  LI  Y+  G +  AR VFDA+ E S V+W T+ISG  K  
Sbjct: 169 QLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMG 228

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
            +  +L +F  +++  V PD   + +VL AC  L  +E G+ IH  +    L  + +  N
Sbjct: 229 RSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMN 288

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            L+D YVKCG V  A  +F+ M  +++++WT++++GY  N   + A+ LF  M   G++P
Sbjct: 289 VLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKP 348

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +     S+L++C+SL+ L  G  +HA+TIK NL  +  V  +LIDMYAKC+ +  + +VF
Sbjct: 349 DMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVF 408

Query: 372 ARTSKKKTVPWNAILAGCVHNGLA---RKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
              +    V +NA++ G    G      +A+ +FR M   ++ P+  T  SLL A A L 
Sbjct: 409 DIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLT 468

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            L  +  IH  + +YG    +   + LID+YS C  L+ +  +F E+ +  KD+V+W+ +
Sbjct: 469 SLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKV--KDLVIWNSM 526

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGGLLDEGL 537
            AGY      E A++LF E+  S  +P+E TF + + A             H  LL  GL
Sbjct: 527 FAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGL 586

Query: 538 D----LFNFMLENHQTCSRADH---------------YTCIVDLLGRAGRLDEAYDLIRT 578
           +    + N +L+ +  C   +                +  ++      G   +A  ++  
Sbjct: 587 ECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEK 646

Query: 579 M---PLKPTHAVWGALLGACVIHGNVE--LGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633
           M    ++P +  +  +L AC   G VE  L +      F +EPE   +YV +  L     
Sbjct: 647 MMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETE-HYVCMVSLLGRAG 705

Query: 634 RWKDAENVRDVMDEK 648
           R   A  + + M  K
Sbjct: 706 RLNKARELIEKMPTK 720



 Score =  221 bits (564), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 137/480 (28%), Positives = 237/480 (49%), Gaps = 9/480 (1%)

Query: 29  IAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKM 84
           + G KQ+HA I+  G  +   L + L+ +Y   G V     LF+ M  ++   + T++  
Sbjct: 265 LEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSG 324

Query: 85  YAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDM 144
           Y QN    +++++F  M + G   PD Y    ++ +C  L     G  +H   +      
Sbjct: 325 YKQNALHKEAMELFTSMSKFG-LKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGN 383

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA---KEALVVFD 201
           D++V N LI MY     +  ARKVFD      VV +N +I GY +        EAL +F 
Sbjct: 384 DSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFR 443

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
            M    + P   + VS+L A   L  + + + IH L+    L  +I A +AL+D+Y  C 
Sbjct: 444 DMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCY 503

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
            + ++RLVFD M  +D+V W SM  GY    +   AL LF  +Q    RP+  T  ++++
Sbjct: 504 CLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVT 563

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
           A  +L  ++ G+  H   +K+ LEC   +  AL+DMYAKC   + + + F   + +  V 
Sbjct: 564 AAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVC 623

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           WN++++   ++G  +KA+++  +M+ E +EPN  T   +L A +    ++  +     ++
Sbjct: 624 WNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELML 683

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           R+G     E    ++ +  + G L  A ++  ++P K   I VW  +++G    G+ E A
Sbjct: 684 RFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAI-VWRSLLSGCAKAGNVELA 742


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/537 (39%), Positives = 325/537 (60%), Gaps = 5/537 (0%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H R+L+ G     F+   LI    +FG++  AR+VFD +    +  WN +I GY +N +
Sbjct: 40  IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNH 99

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            ++AL+++  M  + V PD  +   +L AC  L  ++MGR +H  V       ++   N 
Sbjct: 100 FQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNG 159

Query: 253 LVDMYVKCGSVNEARLVFD--RMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           L+ +Y KC  +  AR VF+   + ER +V+WT++++ YA NG+   AL +F  M+   V+
Sbjct: 160 LIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVK 219

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           P+ + + S+L+A + L  LK+GRS+HA  +K  LE E  +  +L  MYAKC  V  +  +
Sbjct: 220 PDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKIL 279

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F +      + WNA+++G   NG AR+A+++F +M+ + V P+  ++ S + A A +  L
Sbjct: 280 FDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSL 339

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
           +QA +++ Y+ R  +   V +S+ LID+++KCGS+E A  +F      D+D+VVWS +I 
Sbjct: 340 EQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDR--TLDRDVVVWSAMIV 397

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           GYG+HG    A+SL++ M + GV PN+VTF   L AC+H G++ EG   FN M  +H+  
Sbjct: 398 GYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLM-ADHKIN 456

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
            +  HY C++DLLGRAG LD+AY++I+ MP++P   VWGALL AC  H +VELGE AA+ 
Sbjct: 457 PQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQ 516

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           LF ++P N G+YV LS LY+A R W     VR  M EKGL K    S +EVR  L A
Sbjct: 517 LFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEA 573



 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 267/476 (56%), Gaps = 8/476 (1%)

Query: 30  AGTKQLHAFIITSGPLFT-HLRSSLVRA---YGHVSNVRILFDEMSERSSFLYNTVMKMY 85
           A  KQ+HA ++  G  F+  L + L+ A   +G ++  R +FD++     F +N +++ Y
Sbjct: 35  AQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGY 94

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
           ++N    D+L M+  M +L   +PD++T+P ++KAC+ L+  ++G  +H +V   GFD D
Sbjct: 95  SRNNHFQDALLMYSNM-QLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDAD 153

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDA--MWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
            FV N LIA+Y     + +AR VF+   + E ++VSW  ++S Y +N    EAL +F  M
Sbjct: 154 VFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHM 213

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
            K  V+PD  ++VSVL A   L++++ GR IH  V    L        +L  MY KCG V
Sbjct: 214 RKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQV 273

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
             A+++FD+M   +++ W +MI+GYA NG  R A+ +F  M  + VRP++++I S +SAC
Sbjct: 274 ATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISAC 333

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
           + +  L++ RS++ +  + +   +V + +ALIDM+AKC  V+ +  VF RT  +  V W+
Sbjct: 334 AQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWS 393

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           A++ G   +G AR+A+ L+R M    V PND T   LL A      +++       +  +
Sbjct: 394 AMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMADH 453

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
                 +    +ID+  + G L+ A+++   +P++   + VW  +++    H H E
Sbjct: 454 KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQ-PGVTVWGALLSACKKHRHVE 508


>gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa]
 gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa]
          Length = 749

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/639 (36%), Positives = 379/639 (59%), Gaps = 12/639 (1%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAYGHVSNVRI---LFDEMSE-RSSFLYNTVMKMYAQ 87
           K LHA +I  G   FT + +S++  Y    +  I   +F+ M   R S  +N ++  +  
Sbjct: 67  KSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLD 126

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NGA    L  F    R+  + P+  T  +VI+AC  L  +  G+ LHG ++ +GF   + 
Sbjct: 127 NGALVAGLWWFTNA-RVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISS 185

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM-LKS 206
           V N L++MY++  +++ AR++FD M E  V++W+ +I GY +    +  L +F  M L  
Sbjct: 186 VQNSLLSMYVD-ADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVP 244

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           G+EPD   +VSVL AC   +++  GR++H LV       ++   N+L+DMY KC     A
Sbjct: 245 GIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSA 304

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
             VF+ +S+R+ V+W SM++G+ LN +   A  L   M+ E V  + +T+ ++L  C   
Sbjct: 305 FKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYF 364

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
            +    +S+H   I++  E   +V +ALID YAKC L++++++VFAR  ++  V W+ ++
Sbjct: 365 VHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMI 424

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           +G  H G   +A+ ++++M  ++V+PN  T+ +LL A ++ A+L+++   H   IR GF 
Sbjct: 425 SGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFA 484

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           S V V T ++D+YSKCG + ++ + F ++ +K+  IV WS +IA YGM+G    A++LF 
Sbjct: 485 SEVTVGTAVVDMYSKCGEILASRRAFDQLALKN--IVTWSAMIAAYGMNGLAHEALALFA 542

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           EM + G++PN VT  S L ACSHGGL++EGL LF  M++        +HY+C+VD+LGRA
Sbjct: 543 EMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRA 602

Query: 567 GRLDEAYDLIRTMP--LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
           G+LD A ++I+ MP  LK   ++WG+LL AC  +G  ELG+ A   + ELEP N   Y++
Sbjct: 603 GKLDTAIEVIKAMPHNLKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLV 662

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            S +Y+A   W DA  +R +  EKG++    +SL+ + N
Sbjct: 663 ASSMYAADGLWDDAARIRVLAKEKGVKVVAGYSLVHIDN 701



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 158/495 (31%), Positives = 257/495 (51%), Gaps = 12/495 (2%)

Query: 29  IAGTKQ----LHAFIITSGP-LFTHLRSSLVRAY--GHVSNVRILFDEMSERSSFLYNTV 81
           I GTK     LH ++I SG    + +++SL+  Y    +   R LFDEM E+    ++ +
Sbjct: 161 ILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVDADMECARELFDEMHEKDVIAWSVM 220

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           +  Y Q       L+MF  M+ +    PD      V+KAC        G  +HG V+  G
Sbjct: 221 IGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRG 280

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
           FD D FV N LI MY    +  +A KVF+ + + + VSWN+++SG+  N    EA  +  
Sbjct: 281 FDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLIS 340

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
            M K  VE D  ++V++L  C Y       + IH ++       N    +AL+D Y KC 
Sbjct: 341 SMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCY 400

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
            +  A  VF RM  RDVV+W++MI+G+A  G    A+ ++Q M  + V+PN +TI +LL 
Sbjct: 401 LIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLE 460

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
           ACS    LKR +  H   I+Q    EV V TA++DMY+KC  +  S + F + + K  V 
Sbjct: 461 ACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVT 520

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           W+A++A    NGLA +A+ LF +M    ++PN  T  S+L A +    +++ +++   ++
Sbjct: 521 WSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMV 580

Query: 442 R-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD-IVVWSVIIAG---YGMHG 496
           +  G     E  + ++D+  + G L++A ++   +P   K+   +W  +++    YG+  
Sbjct: 581 QELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPHNLKNGASIWGSLLSACRSYGLTE 640

Query: 497 HGETAVSLFKEMVQS 511
            G+ A+S   E+  S
Sbjct: 641 LGKEAISRVLELEPS 655



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 155/531 (29%), Positives = 263/531 (49%), Gaps = 30/531 (5%)

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           +K  + NG   + +  +  + + G    D   +P ++KA + L+ R  G +LH  ++  G
Sbjct: 19  IKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRH-GKSLHACLIKQG 77

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE-HSVVSWNTLISGYFKNAYAKEALVVF 200
           FD  T +GN ++  Y+  G+   A  VF++M      VSWN LI G+  N      L  F
Sbjct: 78  FDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWF 137

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
                +G EP+ +++V V+ AC  L     G ++H  +         +  N+L+ MYV  
Sbjct: 138 TNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVD- 196

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF-EGVRPNSLTIGSL 319
             +  AR +FD M E+DV+ W+ MI GY    + +  L +F+ M    G+ P+ + + S+
Sbjct: 197 ADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSV 256

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           L AC+S   +  GR +H   I +  +C++ VE +LIDMY+KC     +F+VF   S++  
Sbjct: 257 LKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNN 316

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           V WN++L+G V N    +A  L   M  E VE ++ TL ++L             +IHC 
Sbjct: 317 VSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCV 376

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           +IR G  +   V + LID Y+KC  +E A ++F+   ++ +D+V WS +I+G+   G  +
Sbjct: 377 MIRRGSEANELVLSALIDAYAKCYLIEIAWEVFAR--MRRRDVVSWSTMISGFAHCGKPD 434

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGGLLDEGLDLFNFMLENHQ 548
            A+++++EM +  V+PN +T  + L ACS           HG  + +G            
Sbjct: 435 EAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGF----------- 483

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
             S     T +VD+  + G +  +      + LK     W A++ A  ++G
Sbjct: 484 -ASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNI-VTWSAMIAAYGMNG 532



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 20/291 (6%)

Query: 280 TWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWT 339
            W   I   + NG  +  +  +  ++  G++   +++   +    S    + G+SLHA  
Sbjct: 14  NWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRHGKSLHACL 73

Query: 340 IKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK-TVPWNAILAGCVHNGLARKA 398
           IKQ  +    +  +++  Y +C    ++  VF    + + +V WN ++ G + NG     
Sbjct: 74  IKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAG 133

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
           +  F    V   EPN +T+  ++ A  IL      + +H YLI+ GF ++  V   L+ +
Sbjct: 134 LWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSM 193

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV-QSGVQPNE 517
           Y     +E A ++F E  + +KD++ WSV+I GY      +  + +F++MV   G++P+ 
Sbjct: 194 YVD-ADMECARELFDE--MHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDG 250

Query: 518 VTFTSALHACS-----------HGGLLDEGL--DLF--NFMLENHQTCSRA 553
           V   S L AC+           HG ++  G   DLF  N +++ +  C  A
Sbjct: 251 VVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDA 301


>gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa]
          Length = 749

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/639 (36%), Positives = 379/639 (59%), Gaps = 12/639 (1%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAYGHVSNVRI---LFDEMSE-RSSFLYNTVMKMYAQ 87
           K LHA +I  G   FT + +S++  Y    +  I   +F+ M   R S  +N ++  +  
Sbjct: 67  KSLHACLIKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLD 126

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NGA    L  F    R+  + P+  T  +VI+AC  L  +  G+ LHG ++ +GF   + 
Sbjct: 127 NGALVAGLWWFTNA-RVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISS 185

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM-LKS 206
           V N L++MY++  +++ AR++FD M E  V++W+ +I GY +    +  L +F  M L  
Sbjct: 186 VQNSLLSMYVD-ADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVP 244

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           G+EPD   +VSVL AC   +++  GR++H LV       ++   N+L+DMY KC     A
Sbjct: 245 GIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSA 304

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
             VF+ +S+R+ V+W SM++G+ LN +   A  L   M+ E V  + +T+ ++L  C   
Sbjct: 305 FKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYF 364

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
            +    +S+H   I++  E   +V +ALID YAKC L++++++VFAR  ++  V W+ ++
Sbjct: 365 VHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMI 424

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           +G  H G   +A+ ++++M  ++V+PN  T+ +LL A ++ A+L+++   H   IR GF 
Sbjct: 425 SGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFA 484

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           S V V T ++D+YSKCG + ++ + F ++ +K+  IV WS +IA YGM+G    A++LF 
Sbjct: 485 SEVTVGTAVVDMYSKCGEILASRRAFDQLALKN--IVTWSAMIAAYGMNGLAHEALALFA 542

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           EM + G++PN VT  S L ACSHGGL++EGL LF  M++        +HY+C+VD+LGRA
Sbjct: 543 EMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRA 602

Query: 567 GRLDEAYDLIRTMP--LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
           G+LD A ++I+ MP  LK   ++WG+LL AC  +G  ELG+ A   + ELEP N   Y++
Sbjct: 603 GKLDTAIEVIKAMPDNLKNGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLV 662

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            S +Y+A   W DA  +R +  EKG++    +SL+ + N
Sbjct: 663 ASSMYAADGLWDDAARIRVLAKEKGVKVVAGYSLVHIDN 701



 Score =  229 bits (583), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 158/495 (31%), Positives = 257/495 (51%), Gaps = 12/495 (2%)

Query: 29  IAGTKQ----LHAFIITSGP-LFTHLRSSLVRAY--GHVSNVRILFDEMSERSSFLYNTV 81
           I GTK     LH ++I SG    + +++SL+  Y    +   R LFDEM E+    ++ +
Sbjct: 161 ILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVDADMECARELFDEMHEKDVIAWSVM 220

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           +  Y Q       L+MF  M+ +    PD      V+KAC        G  +HG V+  G
Sbjct: 221 IGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDVCTGRLVHGLVIHRG 280

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
           FD D FV N LI MY    +  +A KVF+ + + + VSWN+++SG+  N    EA  +  
Sbjct: 281 FDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGFVLNENYSEAQSLIS 340

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
            M K  VE D  ++V++L  C Y       + IH ++       N    +AL+D Y KC 
Sbjct: 341 SMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCY 400

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
            +  A  VF RM  RDVV+W++MI+G+A  G    A+ ++Q M  + V+PN +TI +LL 
Sbjct: 401 LIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPNVITIINLLE 460

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
           ACS    LKR +  H   I+Q    EV V TA++DMY+KC  +  S + F + + K  V 
Sbjct: 461 ACSVTAELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVT 520

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           W+A++A    NGLA +A+ LF +M    ++PN  T  S+L A +    +++ +++   ++
Sbjct: 521 WSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSLFKSMV 580

Query: 442 R-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD-IVVWSVIIAG---YGMHG 496
           +  G     E  + ++D+  + G L++A ++   +P   K+   +W  +++    YG+  
Sbjct: 581 QELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPDNLKNGASIWGSLLSACRSYGLTE 640

Query: 497 HGETAVSLFKEMVQS 511
            G+ A+S   E+  S
Sbjct: 641 LGKEAISRVLELEPS 655



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 155/531 (29%), Positives = 263/531 (49%), Gaps = 30/531 (5%)

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           +K  + NG   + +  +  + + G    D   +P ++KA + L+ R  G +LH  ++  G
Sbjct: 19  IKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRH-GKSLHACLIKQG 77

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE-HSVVSWNTLISGYFKNAYAKEALVVF 200
           FD  T +GN ++  Y+  G+   A  VF++M      VSWN LI G+  N      L  F
Sbjct: 78  FDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWF 137

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
                +G EP+ +++V V+ AC  L     G ++H  +         +  N+L+ MYV  
Sbjct: 138 TNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVD- 196

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF-EGVRPNSLTIGSL 319
             +  AR +FD M E+DV+ W+ MI GY    + +  L +F+ M    G+ P+ + + S+
Sbjct: 197 ADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSV 256

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           L AC+S   +  GR +H   I +  +C++ VE +LIDMY+KC     +F+VF   S++  
Sbjct: 257 LKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNN 316

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           V WN++L+G V N    +A  L   M  E VE ++ TL ++L             +IHC 
Sbjct: 317 VSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCV 376

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           +IR G  +   V + LID Y+KC  +E A ++F+   ++ +D+V WS +I+G+   G  +
Sbjct: 377 MIRRGSEANELVLSALIDAYAKCYLIEIAWEVFAR--MRRRDVVSWSTMISGFAHCGKPD 434

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGGLLDEGLDLFNFMLENHQ 548
            A+++++EM +  V+PN +T  + L ACS           HG  + +G            
Sbjct: 435 EAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGF----------- 483

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
             S     T +VD+  + G +  +      + LK     W A++ A  ++G
Sbjct: 484 -ASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNI-VTWSAMIAAYGMNG 532



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 136/291 (46%), Gaps = 20/291 (6%)

Query: 280 TWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWT 339
            W   I   + NG  +  +  +  ++  G++   +++   +    S    + G+SLHA  
Sbjct: 14  NWILRIKESSANGKWQEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLSHRHGKSLHACL 73

Query: 340 IKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK-TVPWNAILAGCVHNGLARKA 398
           IKQ  +    +  +++  Y +C    ++  VF    + + +V WN ++ G + NG     
Sbjct: 74  IKQGFDSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAG 133

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
           +  F    V   EPN +T+  ++ A  IL      + +H YLI+ GF ++  V   L+ +
Sbjct: 134 LWWFTNARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSM 193

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV-QSGVQPNE 517
           Y     +E A ++F E  + +KD++ WSV+I GY      +  + +F++MV   G++P+ 
Sbjct: 194 YVD-ADMECARELFDE--MHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDG 250

Query: 518 VTFTSALHACS-----------HGGLLDEGL--DLF--NFMLENHQTCSRA 553
           V   S L AC+           HG ++  G   DLF  N +++ +  C  A
Sbjct: 251 VVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDA 301


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/651 (34%), Positives = 359/651 (55%), Gaps = 7/651 (1%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEM 70
           L+  +++    +K+++  +Q+H   +        ++ ++L+  Y   G +    ++F  +
Sbjct: 122 LLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHAL 181

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
             R+   +NTV+  YAQ G    +L++F  M   G   PD +     + AC+ L + + G
Sbjct: 182 PVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEG-VRPDRFVLASAVSACSALGFLEGG 240

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
             +HG    +  + DT V N LI +Y     + AARK+FD M   ++VSW T+ISGY +N
Sbjct: 241 RQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQN 300

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
           ++  EA+ +F  M ++G +PD  +  S+L +CG L  I  GR IH  V    L  +    
Sbjct: 301 SFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVK 360

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           NAL+DMY KC  + EAR VFD ++E D +++ +MI GY+ N D+  A+ +FQ M+F  +R
Sbjct: 361 NALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLR 420

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           P+ LT  SLL   SS   ++  + +H   IK     ++   +ALID+Y+KC+LV  +  V
Sbjct: 421 PSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTV 480

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F     K  V WN+++ G   N    +A++LF Q+L+  + PN+ T  +L+   + LA +
Sbjct: 481 FNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASM 540

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
                 H ++I+ G  +   VS  LID+Y+KCG ++    +F       +D++ W+ +I 
Sbjct: 541 FHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFESTC--GEDVICWNSMIT 598

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
            Y  HGH E A+ +F+ M ++ V+PN VTF   L AC+H G + EGL+ FN M  N+   
Sbjct: 599 TYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEGLNHFNSMKSNYDIE 658

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
              +HY  +V+L GR+G+L  A + I  MP+KP  AVW +LL AC + GN E+G  AA+ 
Sbjct: 659 PGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLSACHLFGNAEIGRYAAEM 718

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
               +P + G YVLLS +Y++   W D  N+R  MD  G  K    S IEV
Sbjct: 719 ALLADPTDSGPYVLLSNIYASKGLWADVHNLRQQMDSSGTVKETGCSWIEV 769



 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 179/592 (30%), Positives = 297/592 (50%), Gaps = 21/592 (3%)

Query: 49  LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           L + L+R Y   G + + R LFD M  R+   + +V+ MY Q+G    ++ +F+   +  
Sbjct: 55  LTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQKAS 114

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
              P+ +    V++ACT      LG  +HG  +    D + +VG  LI +Y   G +  A
Sbjct: 115 CEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEA 174

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
             VF A+   + V+WNT+I+GY +      AL +FD M   GV PD   + S + AC  L
Sbjct: 175 MLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSAL 234

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
             +E GR IH          + +  N L+D+Y KC  ++ AR +FD M  R++V+WT+MI
Sbjct: 235 GFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMI 294

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           +GY  N     A+ +F  M   G +P+     S+L++C SL  + +GR +HA  IK +LE
Sbjct: 295 SGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLE 354

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
            +  V+ ALIDMYAKC  +  +  VF   ++   + +NA++ G   N    +AV +F++M
Sbjct: 355 ADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRM 414

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
               + P+  T  SLL   +    ++ +  IH  +I+ G    +  ++ LID+YSKC  +
Sbjct: 415 RFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLV 474

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
             A  +F+ +    KD+V+W+ +I G+  +  GE A+ LF +++ SG+ PNE TF + + 
Sbjct: 475 NDAKTVFNMLHY--KDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVT 532

Query: 526 ACSHGGLLDEGLDLFNFML----ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581
             S    +  G     +++    +N    S A     ++D+  + G + E   L  +   
Sbjct: 533 VASTLASMFHGQQFHAWIIKAGVDNDPHVSNA-----LIDMYAKCGFIKEGRMLFESTCG 587

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFEL--EPENPGNYVLLSKLYSA 631
           +     W +++     HG+ E     A  +F L  E E   NYV    + SA
Sbjct: 588 EDV-ICWNSMITTYAQHGHAE----EALQVFRLMGEAEVEPNYVTFVGVLSA 634



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 136/453 (30%), Positives = 230/453 (50%), Gaps = 18/453 (3%)

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
           R+L  A+H R  + G   D F+ N L+  Y N G ++ AR +FD M   ++VSW ++IS 
Sbjct: 34  RRLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISM 93

Query: 187 YFKNAYAKEALVVFDWMLKSGVE-PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           Y ++     A+ +F    K+  E P+   + SVL AC   K + +G  +H +     L  
Sbjct: 94  YTQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDA 153

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           N+    AL+++Y K G ++EA LVF  +  R  VTW ++I GYA  G    AL LF  M 
Sbjct: 154 NVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMG 213

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            EGVRP+   + S +SACS+L +L+ GR +H +  +   E +  V   LID+Y KC+ + 
Sbjct: 214 IEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLS 273

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + ++F     +  V W  +++G + N    +A+ +F  M     +P+     S+L +  
Sbjct: 274 AARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCG 333

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            LA + Q   IH ++I+    +   V   LID+Y+KC  L  A  +F    + + D + +
Sbjct: 334 SLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFD--ALAEDDAISY 391

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGGLLD 534
           + +I GY  +     AV++F+ M    ++P+ +TF S L   S           HG ++ 
Sbjct: 392 NAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIK 451

Query: 535 EG--LDLF--NFMLENHQTCSRADHYTCIVDLL 563
            G  LDL+  + +++ +  CS  +    + ++L
Sbjct: 452 SGTSLDLYAASALIDVYSKCSLVNDAKTVFNML 484


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 241/644 (37%), Positives = 361/644 (56%), Gaps = 19/644 (2%)

Query: 28  SIAGTKQLHAFIITSGPLFT-HLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMK 83
           ++   K LHA ++ S  +    + + LV  Y ++ NV   R  FD +  R  + +N ++ 
Sbjct: 66  NLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMIS 125

Query: 84  MYAQNGASHDSLKMF-LGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
            Y + G S + ++ F L ML  G   PD  T+P V+KAC  +     G  +H   L  GF
Sbjct: 126 GYGRAGNSSEVIRCFSLFMLSSG-LTPDYRTFPSVLKACRTVI---DGNKIHCLALKFGF 181

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
             D +V   LI +Y  +  V  AR +FD M    + SWN +ISGY ++  AKEAL     
Sbjct: 182 MWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALT---- 237

Query: 203 MLKSGVEP-DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
            L +G+   D  +VVS+L AC    +   G  IH       L   +   N L+D+Y + G
Sbjct: 238 -LSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFG 296

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
            + + + VFDRM  RD+++W S+I  Y LN     A+ LFQ M+   ++P+ LT+ SL S
Sbjct: 297 RLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLAS 356

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECE-VIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
             S L  ++  RS+  +T+++    E + +  A++ MYAK  LV  +  VF        +
Sbjct: 357 ILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVI 416

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVE-VVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
            WN I++G   NG A +A+E++  M  E  +  N  T  S+LPA +    L+Q M +H  
Sbjct: 417 SWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGR 476

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           L++ G    V V T L D+Y KCG LE A  +F +IP  +   V W+ +IA +G HGHGE
Sbjct: 477 LLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNS--VPWNTLIACHGFHGHGE 534

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
            AV LFKEM+  GV+P+ +TF + L ACSH GL+DEG   F  M  ++       HY C+
Sbjct: 535 KAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCM 594

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENP 619
           VD+ GRAG+L+ A   I++M L+P  ++WGALL AC +HGNV+LG++A++ LFE+EPE+ 
Sbjct: 595 VDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHV 654

Query: 620 GNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           G +VLLS +Y++  +W+  + +R +   KGLRK P  S +EV N
Sbjct: 655 GYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDN 698



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 98/361 (27%), Positives = 167/361 (46%), Gaps = 16/361 (4%)

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
           Y   ++  + +H  +   +  +N+     LV++Y   G+V  AR  FD +  RDV  W  
Sbjct: 63  YCTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNL 122

Query: 284 MINGYALNGDVRNALGLFQL-MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           MI+GY   G+    +  F L M   G+ P+  T  S+L AC ++     G  +H   +K 
Sbjct: 123 MISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVI---DGNKIHCLALKF 179

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVEL- 401
               +V V  +LI +Y++   V  +  +F     +    WNA+++G   +G A++A+ L 
Sbjct: 180 GFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLS 239

Query: 402 --FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459
              R M       +  T+ SLL A     D  + + IH Y I++G  S + VS  LID+Y
Sbjct: 240 NGLRAM-------DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLY 292

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
           ++ G L    K+F  + +  +D++ W+ II  Y ++     A+SLF+EM  S +QP+ +T
Sbjct: 293 AEFGRLRDCQKVFDRMYV--RDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLT 350

Query: 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
             S     S  G +     +  F L              +V +  + G +D A  +   +
Sbjct: 351 LISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL 410

Query: 580 P 580
           P
Sbjct: 411 P 411


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/661 (35%), Positives = 365/661 (55%), Gaps = 9/661 (1%)

Query: 5   SHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVR----AYGHV 60
           SH +    T++   L+Q        A  K LH  II  G       ++++      Y  +
Sbjct: 36  SHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSL 95

Query: 61  SNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG-EYNPDNYTYPIVIK 119
            +   LFDEM +R++  + T+++ Y+Q     +++ +F  +   G E NP  + +  V+K
Sbjct: 96  PDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNP--FVFSTVLK 153

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
                 W KLG ++H  V   GFD D FVG  LI  Y   G  + AR+VFDA+    +VS
Sbjct: 154 LLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVS 213

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           W  +++ Y +N   +E+L +F  M   G +P+  +  SVL AC  L+   +G+ +H    
Sbjct: 214 WTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAF 273

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
                + +     L+D+Y+K G V++A  VF+ M + DV+ W+ MI  YA +     A+ 
Sbjct: 274 KTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIE 333

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           +F  M+   V PN  T+ SLL AC+SL  L+ G  +H   +K  L+  V V  AL+DMYA
Sbjct: 334 MFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYA 393

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           KC  ++ S Q+F+ +     V WN ++ G V  G   KA+ LF+ ML   V+  + T +S
Sbjct: 394 KCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSS 453

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           +L A A +A L+    IH   ++  +     V   LID+Y+KCG+++ A  +F    +++
Sbjct: 454 VLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFD--MLRE 511

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
            D V W+ +I+GY +HG    A+  F+ M+++  +P++VTF   L ACS+ GLLD G   
Sbjct: 512 HDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAY 571

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           F  M+E +     A+HYTC+V LLGR+G LD+A  L+  +P +P+  VW ALL ACVIH 
Sbjct: 572 FKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHN 631

Query: 600 NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           +VELG ++A+ + E+EPE+   +VLLS +Y+  RRW +  ++R  M  KG+RK P  S I
Sbjct: 632 DVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWI 691

Query: 660 E 660
           E
Sbjct: 692 E 692


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/645 (35%), Positives = 364/645 (56%), Gaps = 16/645 (2%)

Query: 24  AATKSIAGTKQLHAFIITSGPLFTH---LRSSLVRAYGHVSNV---RILFDEMSERSSFL 77
           +A  S+   +++HA II +  +      L+++LV  YG   +V   R +FD +  R +  
Sbjct: 155 SAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVS 214

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           + +++  YA NG   ++L ++  M   G   PD+ T+   + ACT L     G A+H R+
Sbjct: 215 WTSMISSYANNGFCDEALDLYQQMDADG-IQPDSITFTSALLACTKLVD---GKAIHARI 270

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           + +  + D FVG+ LI MY   G+V +AR+ F+ +    VV W +L++ Y +  + +EAL
Sbjct: 271 VSSNMESD-FVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREAL 329

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
            ++  M   GV  D  + V+ L AC  L  ++ G+ IH  V      +++    AL+ MY
Sbjct: 330 DLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGF-QSLVVHTALLTMY 388

Query: 258 VKCGSVNEARLVFDRMSE-RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
            KCG ++ AR VF+R+ + R+V  WT+MI+ YA  G  + AL L+  M  EG RPN  T 
Sbjct: 389 AKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTF 448

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
            ++L+ACSS   L+ G  +H       L   V V+ AL+ MYAKC  ++L+   F  + +
Sbjct: 449 SNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLELAKSAFEASGR 508

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           K  V WNA++     +GL R+A++L++ M  + V P++ T+ S L A AI   LQ    I
Sbjct: 509 KDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREI 568

Query: 437 HCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           H  +++   F S + V T L+++Y +CG LE+A  +F ++    +D++ W+ + + Y   
Sbjct: 569 HSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMFEDMG--QRDVLSWTAMTSAYAQQ 626

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
           GH +  + L+ EMV  G++PNE+TFTS L  CSH GLL  G++ F  M   H+     +H
Sbjct: 627 GHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQSEHEVVPIREH 686

Query: 556 YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
           + C+VDLLGR+GRL +A  L+ +MP +P    W  +LG+C  H + +  + AA+ + EL+
Sbjct: 687 FLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTAKRAARRVKELD 746

Query: 616 PENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           PEN   Y LLS +++A    ++A  V+  M E GL+K P  SLIE
Sbjct: 747 PENTSLYSLLSSIFTAAGLPQEALEVQLSMKEMGLKKPPGQSLIE 791



 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 185/593 (31%), Positives = 306/593 (51%), Gaps = 17/593 (2%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAYGHVSNV---RILFDEMSE- 72
           +L+QQ     S+A  K +H  ++ +G      L + L++ YG+   +   R  F   +  
Sbjct: 47  ELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFASI 106

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           ++   YN ++  Y +NG  + +L+++  M   G   PD  TY IV+ +C+ +   +    
Sbjct: 107 KAVACYNQMLSAYGKNGLWNRALELYHRMCEEGP-EPDKITYFIVLGSCSAVGSLREARE 165

Query: 133 LHGRVLITG--FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           +H  ++        +  + N L+ MY   G V+ ARKVFD +     VSW ++IS Y  N
Sbjct: 166 IHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANN 225

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
            +  EAL ++  M   G++PD  +  S L AC  L +   G+ IH  +    +  +    
Sbjct: 226 GFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVD---GKAIHARIVSSNMESDFVG- 281

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           +AL++MY +CG V+ AR  F+++  + VV WTS++  Y      R AL L+  M  EGV 
Sbjct: 282 SALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVH 341

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
            + +T  + L AC+SL  LK G+++H+   +   +  ++V TAL+ MYAKC  +  +  V
Sbjct: 342 ADGVTYVTALGACASLGALKEGKAIHSRVFECGFQ-SLVVHTALLTMYAKCGELDAARAV 400

Query: 371 FARTSKKKTV-PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           F R  +K+ V  W A+++     G  ++A+EL+ QM+ E   PN+ T +++L A +   D
Sbjct: 401 FNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGD 460

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L+  M IH ++      S V V   L+ +Y+KCGSLE A   F       KD+V W+ +I
Sbjct: 461 LEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLELAKSAFE--ASGRKDLVSWNAMI 518

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
             Y  HG G  A+ L++ M   GV P+EVT  S+L AC+  G L  G ++ + +L+N   
Sbjct: 519 GAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSF 578

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
            S     T +V++ GR GRL+ A  +   M  +   + W A+  A    G+ +
Sbjct: 579 RSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLS-WTAMTSAYAQQGHAD 630



 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 170/489 (34%), Positives = 261/489 (53%), Gaps = 11/489 (2%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           Y  +++ C  L     G  +H  +L TG   + F+GN LI MY N GE+  AR  F    
Sbjct: 45  YDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFA 104

Query: 174 E-HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
              +V  +N ++S Y KN     AL ++  M + G EPD  +   VL +C  +  +   R
Sbjct: 105 SIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAR 164

Query: 233 MIHELV--AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
            IH  +  A   +  N++  NALV+MY KCGSV EAR VFD +  RD V+WTSMI+ YA 
Sbjct: 165 EIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYAN 224

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           NG    AL L+Q M  +G++P+S+T  S L AC+ L     G+++HA  +  N+E +  V
Sbjct: 225 NGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLV---DGKAIHARIVSSNMESD-FV 280

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
            +ALI+MYA+C  V  + Q F +   K  V W +++   V     R+A++L+ +M  E V
Sbjct: 281 GSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGV 340

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
             +  T  + L A A L  L++   IH  +   GF S+V V T L+ +Y+KCG L++A  
Sbjct: 341 HADGVTYVTALGACASLGALKEGKAIHSRVFECGFQSLV-VHTALLTMYAKCGELDAARA 399

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           +F+ +  K +++  W+ +I+ Y   GH + A+ L+ +MV  G +PNE TF++ L ACS  
Sbjct: 400 VFNRVRQK-RNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSS 458

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           G L+ G+ +    +EN +  S       +V +  + G L+ A         K     W A
Sbjct: 459 GDLEAGMKIHGH-VENSELASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDL-VSWNA 516

Query: 591 LLGACVIHG 599
           ++GA   HG
Sbjct: 517 MIGAYAQHG 525


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/537 (39%), Positives = 325/537 (60%), Gaps = 5/537 (0%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H R+L+ G     F+   LI    +FG++  AR+VFD +    +  WN +I GY +N +
Sbjct: 40  IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNH 99

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            ++AL+++  M  + V PD  +   +L AC  L  ++MGR +H  V       ++   N 
Sbjct: 100 FQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNG 159

Query: 253 LVDMYVKCGSVNEARLVFD--RMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           L+ +Y KC  +  AR VF+   + ER +V+WT++++ YA NG+   AL +F  M+   V+
Sbjct: 160 LIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVK 219

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           P+ + + S+L+A + L  LK+GRS+HA  +K  LE E  +  +L  MYAKC  V  +  +
Sbjct: 220 PDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKIL 279

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F +      + WNA+++G   NG AR+A+++F +M+ + V P+  ++ S + A A +  L
Sbjct: 280 FDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSL 339

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
           +QA +++ Y+ R  +   V +S+ LID+++KCGS+E A  +F      D+D+VVWS +I 
Sbjct: 340 EQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDR--TLDRDVVVWSAMIV 397

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           GYG+HG    A+SL++ M + GV PN+VTF   L AC+H G++ EG   FN M  +H+  
Sbjct: 398 GYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRM-ADHKIN 456

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
            +  HY C++DLLGRAG LD+AY++I+ MP++P   VWGALL AC  H +VELGE AA+ 
Sbjct: 457 PQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQ 516

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           LF ++P N G+YV LS LY+A R W     VR  M EKGL K    S +EVR  L A
Sbjct: 517 LFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEA 573



 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 267/476 (56%), Gaps = 8/476 (1%)

Query: 30  AGTKQLHAFIITSGPLFT-HLRSSLVRA---YGHVSNVRILFDEMSERSSFLYNTVMKMY 85
           A  KQ+HA ++  G  F+  L + L+ A   +G ++  R +FD++     F +N +++ Y
Sbjct: 35  AQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGY 94

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
           ++N    D+L M+  M +L   +PD++T+P ++KAC+ L+  ++G  +H +V   GFD D
Sbjct: 95  SRNNHFQDALLMYSNM-QLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDAD 153

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDA--MWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
            FV N LIA+Y     + +AR VF+   + E ++VSW  ++S Y +N    EAL +F  M
Sbjct: 154 VFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQM 213

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
            K  V+PD  ++VSVL A   L++++ GR IH  V    L        +L  MY KCG V
Sbjct: 214 RKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQV 273

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
             A+++FD+M   +++ W +MI+GYA NG  R A+ +F  M  + VRP++++I S +SAC
Sbjct: 274 ATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISAC 333

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
           + +  L++ RS++ +  + +   +V + +ALIDM+AKC  V+ +  VF RT  +  V W+
Sbjct: 334 AQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWS 393

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           A++ G   +G AR+A+ L+R M    V PND T   LL A      +++       +  +
Sbjct: 394 AMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADH 453

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
                 +    +ID+  + G L+ A+++   +P++   + VW  +++    H H E
Sbjct: 454 KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQ-PGVTVWGALLSACKKHRHVE 508


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/571 (39%), Positives = 326/571 (57%), Gaps = 4/571 (0%)

Query: 94  SLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLI 153
           +L  F+ M   G   P   T+  ++K C        G A+H ++   G D +      L 
Sbjct: 43  ALAAFVAMSSAGA-PPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALA 101

Query: 154 AMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL-VVFDWMLKSGVEPDC 212
            MY        AR+VFD M     V+WN L++GY +N  A+ A+ +V     + G  PD 
Sbjct: 102 NMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDS 161

Query: 213 ASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR 272
            ++VSVLPAC   + +   R  H       L + +    A++D Y KCG +  AR+VFD 
Sbjct: 162 ITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDW 221

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
           M  ++ V+W +MI+GYA NGD R AL LF  M  EGV    +++ + L AC  L  L  G
Sbjct: 222 MPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEG 281

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
             +H   ++  L+  V V  ALI MY+KC  V L+  VF    ++  V WNA++ GC  N
Sbjct: 282 MRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQN 341

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
           G +  AV LF +M +E V+P+  TL S++PA A ++D  QA  IH Y IR      V V 
Sbjct: 342 GCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVL 401

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
           T LID+Y+KCG +  A  +F+    +++ ++ W+ +I GYG HG G+ AV LF+EM   G
Sbjct: 402 TALIDMYAKCGRVNIARILFNSA--RERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIG 459

Query: 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572
           + PNE TF S L ACSH GL+DEG + F  M E++      +HY  +VDLLGRAG+LDEA
Sbjct: 460 IVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEA 519

Query: 573 YDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAV 632
           +  I+ MP+ P  +V+GA+LGAC +H NVEL E +A+ +FEL P+    +VLL+ +Y+  
Sbjct: 520 WAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANA 579

Query: 633 RRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
             WKD   VR  M++ GL+K P  S+I+++N
Sbjct: 580 SMWKDVARVRTAMEKNGLQKTPGWSIIQLKN 610



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 152/510 (29%), Positives = 260/510 (50%), Gaps = 6/510 (1%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSS-LVRAYGHV---SNVRI 65
           P        L++  AA   +A  + +HA +   G     L ++ L   Y      ++ R 
Sbjct: 56  PPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARR 115

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD M  R    +N ++  YA+NG +  +++M + M       PD+ T   V+ AC +  
Sbjct: 116 VFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANAR 175

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
                   H   + +G +    V   ++  Y   G+++AAR VFD M   + VSWN +I 
Sbjct: 176 ALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMID 235

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY +N  ++EAL +F+ M++ GV+    SV++ L ACG L  ++ G  +HEL+    L  
Sbjct: 236 GYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDS 295

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           N++  NAL+ MY KC  V+ A  VFD +  R  V+W +MI G A NG   +A+ LF  MQ
Sbjct: 296 NVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQ 355

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            E V+P+S T+ S++ A + +    + R +H ++I+ +L+ +V V TALIDMYAKC  V 
Sbjct: 356 LENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVN 415

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
           ++  +F    ++  + WNA++ G   +G  + AVELF +M    + PN+ T  S+L A +
Sbjct: 416 IARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACS 475

Query: 426 ILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
               + +       +   YG    +E    ++D+  + G L+ A     ++P+ D  + V
Sbjct: 476 HAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPM-DPGLSV 534

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           +  ++    +H + E A    +++ + G Q
Sbjct: 535 YGAMLGACKLHKNVELAEESAQKIFELGPQ 564



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 171/345 (49%), Gaps = 10/345 (2%)

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           +   A   D+  AL  F  M   G  P   T  SLL  C++   L  GR++HA    + +
Sbjct: 31  LRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGI 90

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
           + E +  TAL +MYAKC     + +VF R   +  V WNA++AG   NGLAR A+E+  +
Sbjct: 91  DSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVR 150

Query: 405 MLVEVVE-PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
           M  E  E P+  TL S+LPA A    L      H + IR G   +V V+T ++D Y KCG
Sbjct: 151 MQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCG 210

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            + +A  +F  +P K+   V W+ +I GY  +G    A++LF  MV+ GV   +V+  +A
Sbjct: 211 DIRAARVVFDWMPTKNS--VSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAA 268

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           L AC   G LDEG+ +   ++      S       ++ +  +  R+D A  +   +  + 
Sbjct: 269 LQACGELGCLDEGMRVHELLVRIGLD-SNVSVMNALITMYSKCKRVDLASHVFDELD-RR 326

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLLS 626
           T   W A++  C  +G     E A +    ++ EN  P ++ L+S
Sbjct: 327 TQVSWNAMILGCAQNG---CSEDAVRLFTRMQLENVKPDSFTLVS 368


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 242/664 (36%), Positives = 363/664 (54%), Gaps = 37/664 (5%)

Query: 33  KQLHAFIIT--SGPLFTHLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           +Q+HA  +    G     + ++LV  YG    + +V  +FD +++R    +N+ +    +
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCR 171

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR---KLGIALHGRVLITGFDM 144
                 +L+ F  M ++      ++T   V  AC++L      +LG  LHG  L  G D 
Sbjct: 172 FEKWEQALEAFRAM-QMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQ 229

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
            TF  N L+AMY   G V  ++ +F++  +  +VSWNT+IS + ++    EAL  F  M+
Sbjct: 230 KTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMV 289

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV-AGGRLGKNIAAWNALVDMYVKCGSV 263
             GVE D  ++ SVLPAC +L+ +++G+ IH  V     L +N    +ALVDMY  C  V
Sbjct: 290 LEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQV 349

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSA 322
              R VFD +  R +  W +MI+GYA NG    AL LF ++++  G+ PN+ T+ S++ A
Sbjct: 350 ESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPA 409

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           C          S+H + +K   + +  V+ AL+DMY++   + +S  +F     +  V W
Sbjct: 410 CVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSW 469

Query: 383 NAILAGCVHNGLARKAVELFRQM-----------------LVEVVEPNDATLNSLLPAYA 425
           N ++ G V +G    A+ L  +M                      +PN  TL ++LP  A
Sbjct: 470 NTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCA 529

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            LA + +   IH Y IR    S + V + L+D+Y+KCG L  + ++F+E+P  +K+++ W
Sbjct: 530 ALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMP--NKNVITW 587

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSG-----VQPNEVTFTSALHACSHGGLLDEGLDLF 540
           +V+I   GMHG GE A+ LFK MV         +PNEVTF +   ACSH GL+ EGL+LF
Sbjct: 588 NVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLF 647

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH-AVWGALLGACVIHG 599
             M  +H     +DHY C+VDLLGRAG+L+EAY+L+ TMP +      W +LLGAC IH 
Sbjct: 648 YRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQ 707

Query: 600 NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           NVELGEVAAK L  LEP    +YVLLS +YS+   W  A  VR  M + G++K P  S I
Sbjct: 708 NVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWI 767

Query: 660 EVRN 663
           E R+
Sbjct: 768 EFRD 771



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 154/518 (29%), Positives = 258/518 (49%), Gaps = 30/518 (5%)

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF-VGNCLIAMYMNFGEVKAARK 167
           PDN+ +P V+KA + L   K G  +H   +  G+   +  V N L+ MY   G +    K
Sbjct: 90  PDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCK 149

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC---GY 224
           VFD + +   VSWN+ I+   +    ++AL  F  M    +E    ++VSV  AC   G 
Sbjct: 150 VFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGV 209

Query: 225 LKEIEMGRMIHELVAGGRLG-KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
           +  + +G+ +H      R+G +     NAL+ MY K G V++++ +F+   +RD+V+W +
Sbjct: 210 MHGLRLGKQLHGYSL--RVGDQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNT 267

Query: 284 MINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN 343
           MI+ ++ +     AL  F+LM  EGV  + +TI S+L ACS L  L  G+ +HA+ ++ N
Sbjct: 268 MISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNN 327

Query: 344 LECE-VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
              E   V +AL+DMY  C  V+   +VF     ++   WNA+++G   NGL  KA+ LF
Sbjct: 328 DLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILF 387

Query: 403 RQML-VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
            +M+ V  + PN  T+ S++PA           +IH Y ++ GF     V   L+D+YS+
Sbjct: 388 IEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSR 447

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ----------- 510
            G ++ +  IF  + ++D+  V W+ +I GY + G    A+ L  EM +           
Sbjct: 448 MGKMDISETIFDSMEVRDR--VSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDD 505

Query: 511 ------SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
                    +PN +T  + L  C+    + +G ++  + + N    S     + +VD+  
Sbjct: 506 NDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRN-MLASDITVGSALVDMYA 564

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           + G L+ +  +   MP K     W  L+ AC +HG  E
Sbjct: 565 KCGCLNLSRRVFNEMPNKNV-ITWNVLIMACGMHGKGE 601



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/432 (28%), Positives = 213/432 (49%), Gaps = 15/432 (3%)

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
           S  SW   +    ++   +EA+  +  M  SG  PD  +  +VL A   L++++ G  IH
Sbjct: 56  STASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIH 115

Query: 236 -ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
              V  G    ++   N LV+MY KCG + +   VFDR+++RD V+W S I         
Sbjct: 116 AAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKW 175

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSL---YYLKRGRSLHAWTIKQNLECEVIVE 351
             AL  F+ MQ E +  +S T+ S+  ACS+L   + L+ G+ LH ++++   + +    
Sbjct: 176 EQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQ-KTFTN 234

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
            AL+ MYAK   V  S  +F     +  V WN +++    +    +A+  FR M++E VE
Sbjct: 235 NALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVE 294

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYG-FLSVVEVSTGLIDIYSKCGSLESAHK 470
            +  T+ S+LPA + L  L     IH Y++R    +    V + L+D+Y  C  +ES  +
Sbjct: 295 LDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRR 354

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ-SGVQPNEVTFTSALHACSH 529
           +F    I  + I +W+ +I+GY  +G  E A+ LF EM++ +G+ PN  T  S + AC H
Sbjct: 355 VFDH--ILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVH 412

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
                    +  + +   +   + D Y    ++D+  R G++D +  +  +M ++     
Sbjct: 413 CEAFSNKESIHGYAV---KLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVR-DRVS 468

Query: 588 WGALLGACVIHG 599
           W  ++   V+ G
Sbjct: 469 WNTMITGYVLSG 480



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 139/291 (47%), Gaps = 7/291 (2%)

Query: 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
           R   +W   +     + D R A+  +  M   G RP++    ++L A S L  LK G  +
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQI 114

Query: 336 HAWTIKQNL-ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
           HA  +K       V V   L++MY KC  +    +VF R + +  V WN+ +A       
Sbjct: 115 HAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEK 174

Query: 395 ARKAVELFRQMLVEVVEPNDATLNSLLPAYA---ILADLQQAMNIHCYLIRYGFLSVVEV 451
             +A+E FR M +E +E +  TL S+  A +   ++  L+    +H Y +R G       
Sbjct: 175 WEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTF-T 233

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
           +  L+ +Y+K G ++ +  +F      D+D+V W+ +I+ +        A++ F+ MV  
Sbjct: 234 NNALMAMYAKLGRVDDSKALFES--FVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLE 291

Query: 512 GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDL 562
           GV+ + VT  S L ACSH   LD G ++  ++L N+     +   + +VD+
Sbjct: 292 GVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDM 342


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/571 (39%), Positives = 326/571 (57%), Gaps = 4/571 (0%)

Query: 94  SLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLI 153
           +L  F+ M   G   P   T+  ++K C        G A+H ++   G D +      L 
Sbjct: 43  ALAAFVAMSSAGA-PPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALA 101

Query: 154 AMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL-VVFDWMLKSGVEPDC 212
            MY        AR+VFD M     V+WN L++GY +N  A+ A+ +V     + G  PD 
Sbjct: 102 NMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDS 161

Query: 213 ASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR 272
            ++VSVLPAC   + +   R  H       L + +    A++D Y KCG +  AR+VFD 
Sbjct: 162 ITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDW 221

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
           M  ++ V+W +MI+GYA NGD R AL LF  M  EGV    +++ + L AC  L  L  G
Sbjct: 222 MPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEG 281

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
             +H   ++  L+  V V  ALI MY+KC  V L+  VF    ++  V WNA++ GC  N
Sbjct: 282 MRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQN 341

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
           G +  AV LF +M +E V+P+  TL S++PA A ++D  QA  IH Y IR      V V 
Sbjct: 342 GCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVL 401

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
           T LID+Y+KCG +  A  +F+    +++ ++ W+ +I GYG HG G+ AV LF+EM   G
Sbjct: 402 TALIDMYAKCGRVNIARILFNSA--RERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIG 459

Query: 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572
           + PNE TF S L ACSH GL+DEG + F  M E++      +HY  +VDLLGRAG+LDEA
Sbjct: 460 IVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEA 519

Query: 573 YDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAV 632
           +  I+ MP+ P  +V+GA+LGAC +H NVEL E +A+ +FEL P+    +VLL+ +Y+  
Sbjct: 520 WAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANA 579

Query: 633 RRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
             WKD   VR  M++ GL+K P  S+I+++N
Sbjct: 580 SMWKDVARVRTAMEKNGLQKTPGWSIIQLKN 610



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 152/510 (29%), Positives = 260/510 (50%), Gaps = 6/510 (1%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSS-LVRAYGHV---SNVRI 65
           P        L++  AA   +A  + +HA +   G     L ++ L   Y      ++ R 
Sbjct: 56  PPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARR 115

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD M  R    +N ++  YA+NG +  +++M + M       PD+ T   V+ AC +  
Sbjct: 116 VFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANAR 175

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
                   H   + +G +    V   ++  Y   G+++AAR VFD M   + VSWN +I 
Sbjct: 176 ALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMID 235

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY +N  ++EAL +F+ M++ GV+    SV++ L ACG L  ++ G  +HEL+    L  
Sbjct: 236 GYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDS 295

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           N++  NAL+ MY KC  V+ A  VFD +  R  V+W +MI G A NG   +A+ LF  MQ
Sbjct: 296 NVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQ 355

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            E V+P+S T+ S++ A + +    + R +H ++I+ +L+ +V V TALIDMYAKC  V 
Sbjct: 356 LENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVN 415

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
           ++  +F    ++  + WNA++ G   +G  + AVELF +M    + PN+ T  S+L A +
Sbjct: 416 IARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACS 475

Query: 426 ILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
               + +       +   YG    +E    ++D+  + G L+ A     ++P+ D  + V
Sbjct: 476 HAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPM-DPGLSV 534

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           +  ++    +H + E A    +++ + G Q
Sbjct: 535 YGAMLGACKLHKNVELAEESAQKIFELGPQ 564



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/337 (32%), Positives = 169/337 (50%), Gaps = 10/337 (2%)

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
           D+  AL  F  M   G  P   T  SLL  C++   L  GR++HA    + ++ E +  T
Sbjct: 39  DLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAAT 98

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE- 411
           AL +MYAKC     + +VF R   +  V WNA++AG   NGLAR A+E+  +M  E  E 
Sbjct: 99  ALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGER 158

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           P+  TL S+LPA A    L      H + IR G   +V V+T ++D Y KCG + +A  +
Sbjct: 159 PDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVV 218

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F  +P K+   V W+ +I GY  +G    A++LF  MV+ GV   +V+  +AL AC   G
Sbjct: 219 FDWMPTKNS--VSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELG 276

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
            LDEG+ +   ++      S       ++ +  +  R+D A  +   +  + T   W A+
Sbjct: 277 CLDEGMRVHELLVRIGLD-SNVSVMNALITMYSKCKRVDLASHVFDELD-RRTQVSWNAM 334

Query: 592 LGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLLS 626
           +  C  +G     E A +    ++ EN  P ++ L+S
Sbjct: 335 ILGCAQNG---CSEDAVRLFTRMQLENVKPDSFTLVS 368


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/669 (34%), Positives = 366/669 (54%), Gaps = 23/669 (3%)

Query: 6   HHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG------PLFTHLRSSLVRAY-- 57
            H+LP   H  +    +  +  ++   + LHA ++  G      P  +   S LV  Y  
Sbjct: 22  QHSLP--IHFTVTSFHRLKSPPNLHEARTLHALLLVLGFFQPTCPHSSSFASQLVNVYVN 79

Query: 58  -GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
            G + +  + F  +  +    +N +++     G    ++  +  ML+ G   PDNYTYP+
Sbjct: 80  FGSLQHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHG-VTPDNYTYPL 138

Query: 117 VIKACTDLAWRKLGI----ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           V+KAC+ L   +LG      +HG+        + +V   +I M+   G V+ AR++F+ M
Sbjct: 139 VLKACSSLHALQLGRWVHETMHGKT-----KANVYVQCAVIDMFAKCGSVEDARRMFEEM 193

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
            +  + SW  LI G   N    EAL++F  M   G+ PD   V S+LPACG L+ +++G 
Sbjct: 194 PDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGM 253

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            +           ++   NA++DMY KCG   EA  VF  M   DVV+W+++I GY+ N 
Sbjct: 254 ALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNC 313

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
             + +  L+  M   G+  N++   S+L A   L  LK+G+ +H + +K+ L  +V+V +
Sbjct: 314 LYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGLMSDVVVGS 373

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           ALI MYA C  +K +  +F  TS K  + WN+++ G    G    A   FR++      P
Sbjct: 374 ALIVMYANCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRP 433

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           N  T+ S+LP    +  L+Q   IH Y+ + G    V V   LID+YSKCG LE   K+F
Sbjct: 434 NFITVVSILPICTQMGALRQGKEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVF 493

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
            ++ +  +++  ++ +I+  G HG GE  ++ +++M + G +PN+VTF S L ACSH GL
Sbjct: 494 KQMMV--RNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGL 551

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           LD G  L+N M+ ++      +HY+C+VDL+GRAG LD AY  I  MP+ P   V+G+LL
Sbjct: 552 LDRGWLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRMPMTPDANVFGSLL 611

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
           GAC +H  VEL E+ A+ + +L+ ++ G+YVLLS LY++ +RW+D   VR ++ +KGL K
Sbjct: 612 GACRLHNKVELTELLAERILQLKADDSGHYVLLSNLYASGKRWEDMSKVRSMIKDKGLEK 671

Query: 653 APAHSLIEV 661
            P  S I+V
Sbjct: 672 KPGSSWIQV 680


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 249/717 (34%), Positives = 383/717 (53%), Gaps = 67/717 (9%)

Query: 8   TLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVR 64
           T P T  L+  L Q     K++   K  H  I   G  FT + S  V AY   G  +   
Sbjct: 26  TSPPTIPLISLLRQ----CKTLINAKLAHQQIFVHG--FTEMFSYAVGAYIECGASAEAV 79

Query: 65  ILFDEM--SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
            L   +  S  + F +N +++   + G   D+L  +  M RLG + PD+YT+P V+KAC 
Sbjct: 80  SLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLG-WLPDHYTFPFVLKACG 138

Query: 123 DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE---HSVVS 179
           ++   + G ++H  V   G   + F+ N ++AMY   G +  A ++FD + E     +VS
Sbjct: 139 EIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVS 198

Query: 180 WNTLISGYFKNAYAKEALVVFDWM---LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           WN++++ Y +   ++ AL +   M       + PD  ++V++LPAC  +  ++ G+ +H 
Sbjct: 199 WNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHG 258

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
                 L  ++   NALV MY KC  +NEA  VF+ + ++DVV+W +M+ GY+  G   +
Sbjct: 259 FSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDS 318

Query: 297 ALGLFQLMQFE-----------------------------------GVRPNSLTIGSLLS 321
           AL LF++MQ E                                   G+ PN +T+ SLLS
Sbjct: 319 ALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLS 378

Query: 322 ACSSLYYLKRGRSLHAWTIKQNL-------ECEVIVETALIDMYAKCNLVKLSFQVF--A 372
            C+S+  L  G+  HA+ IK  L       E +++V   LIDMYAKC   +++  +F   
Sbjct: 379 GCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSI 438

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE--VVEPNDATLNSLLPAYAILADL 430
               K  V W  ++ G   +G A  A++LF Q+  +   ++PN  TL+  L A A L +L
Sbjct: 439 EGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGEL 498

Query: 431 QQAMNIHCYLIRYGFLS-VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           +    +H Y +R    S V+ V   LID+YSK G +++A  +F  + +++  +V W+ ++
Sbjct: 499 RLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRN--VVSWTSLM 556

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
            GYGMHG GE A+ LF +M + G   + +TF   L+ACSH G++D+G+  F+ M++    
Sbjct: 557 TGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGI 616

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
              A+HY C+VDLLGRAGRL+EA +LI+ M ++PT  VW ALL A  IH N+ELGE AA 
Sbjct: 617 TPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAAS 676

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILT 666
            L EL  EN G+Y LLS LY+  RRWKD   +R +M   G+RK P  S I+ +   T
Sbjct: 677 KLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTT 733


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/654 (35%), Positives = 359/654 (54%), Gaps = 12/654 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIIT--SGPLFTHLRS-----SLVRAYGHVSNVRILFDEMS 71
           L++   +  ++   + LHA ++T   G L   LR+     S   A G +++ R++FD   
Sbjct: 65  LLRLLPSCGTLLSLRVLHARLLTHPQGLLLGSLRARTKLLSCYAALGDLASARMVFDGTP 124

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGE--YNPDNYTYPIVIKACTDLAWRKL 129
              ++ Y  ++    Q     D++ +   M R        D++   + +KAC   A    
Sbjct: 125 RPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCPEAQDDFVLSLALKACIRSAEYSY 184

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G +LH   +  G   D FV N L+ MY    +++ ARKVF+ + + +VVSW ++ISG  +
Sbjct: 185 GRSLHCDAIKVG-GADGFVMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTSMISGCVQ 243

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N +A + L++F+ M +  V P   ++ +V+ AC  L  +  GR +H  V    L  N   
Sbjct: 244 NGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQGLMSNSFI 303

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
             AL+DMYVKCG ++ AR VFD +S  D+V WT+MI GY  NG+  +AL LF   +F  +
Sbjct: 304 SAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKRFANI 363

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
            PNS+T  ++LSA + L  L  G+S+H   +K  L    +V  AL+DMYAKC  V  + +
Sbjct: 364 APNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADR 423

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           +F R S K  V WN++++G   N +   A+ LF+QM ++   P+  ++ + L A   L D
Sbjct: 424 IFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNALSASVCLGD 483

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L    +IH Y +++ F+S + V T L+++Y+KCG L SA ++F E  + D++ V W  +I
Sbjct: 484 LLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFDE--MNDRNSVTWCAMI 541

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
            GYGM G    ++ LF EM++ GV PN++ FTS L  CSH G++  G   F+ M ++   
Sbjct: 542 GGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCSHSGMVTAGKRYFDSMAQHFNI 601

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
                HY C+VD+L RAG L++A + I  MP++   +VWGA L  C +H  ++  E A K
Sbjct: 602 TPSMKHYACMVDVLARAGNLEDALEFIDNMPMQADTSVWGAFLHGCELHSRLQFAEEAIK 661

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            +  L PE P  YVL+S LY++   W  +  +R  M EKGL K P  S +   N
Sbjct: 662 RMMVLHPERPDLYVLISNLYTSNGMWDKSLAIRRWMQEKGLVKLPGCSSVGHEN 715


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/614 (36%), Positives = 346/614 (56%), Gaps = 6/614 (0%)

Query: 49  LRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN 108
           L S  VR +G V N   +F  M ER  F +N ++  Y + G   ++L ++  +L  G   
Sbjct: 75  LLSMFVR-FGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAG-IR 132

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           PD YT+P V+++C        G  +H  V+   FDMD  V N LI MY+  G+V +AR +
Sbjct: 133 PDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARML 192

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           FD M     +SWN +ISGYF+N    E L +F  M +  ++PD  ++ SV+ AC  L + 
Sbjct: 193 FDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDE 252

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
            +G  +H  V       NI+ +N+L+ MY+  G   EA  VF  M  RDVV+WT++I+G 
Sbjct: 253 RLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGC 312

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
             N     AL  ++ M+  G  P+ +TI S+LSAC+SL  L  G  LH    +      V
Sbjct: 313 VDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYV 372

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
           +V  +LIDMY+KC  ++ + ++F +   K  + W +++ G   N    +A+  FR+M+++
Sbjct: 373 VVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILK 432

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
             +PN  TL S L A A +  L     IH + ++ G      +   ++D+Y +CG + +A
Sbjct: 433 -SKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTA 491

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
               ++  + +KD+  W++++ GY   G G   + LFK MV+S + P++VTF S L ACS
Sbjct: 492 ---LNQFNLNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACS 548

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
             G++ EGL+ F  M  N+       HY C+VDLLGRAG+L+EA++ I  MP+KP  A+W
Sbjct: 549 RSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIW 608

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
           GALL AC IH +V LGE+AA+ +F+ + E+ G Y+LL  LY+   +W +   VR  M E+
Sbjct: 609 GALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEE 668

Query: 649 GLRKAPAHSLIEVR 662
           GL   P  S +EV+
Sbjct: 669 GLIVDPGCSWVEVK 682



 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 148/429 (34%), Positives = 232/429 (54%), Gaps = 8/429 (1%)

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           +GN L++M++ FG+V  A  VF  M E  + SWN L+ GY K  +  EAL ++  +L +G
Sbjct: 71  LGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAG 130

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           + PD  +  SVL +C    ++  GR +H  V       ++   NAL+ MYVKCG V  AR
Sbjct: 131 IRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSAR 190

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           ++FD+M  RD ++W +MI+GY  N +    L LF  M+   + P+ +T+ S++SAC  L 
Sbjct: 191 MLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLG 250

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
             + G  LH++ ++   +  + V  +LI MY      K +  VF+    +  V W  I++
Sbjct: 251 DERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIIS 310

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           GCV N L  KA+E ++ M +    P++ T+ S+L A A L  L   M +H    R G + 
Sbjct: 311 GCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHIL 370

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            V V+  LID+YSKC  +E A +IF +IP  DKD++ W+ +I G  ++     A+  F++
Sbjct: 371 YVVVANSLIDMYSKCKRIEKALEIFHQIP--DKDVISWTSVINGLRINNRCFEALIFFRK 428

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGR 565
           M+    +PN VT  SAL AC+  G L  G ++    L+        D +    I+DL  R
Sbjct: 429 MILKS-KPNSVTLISALSACARVGALMCGKEIHAHALKAGMG---FDGFLPNAILDLYVR 484

Query: 566 AGRLDEAYD 574
            GR+  A +
Sbjct: 485 CGRMRTALN 493


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/561 (39%), Positives = 329/561 (58%), Gaps = 8/561 (1%)

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARK 167
           PD++T+P +++A    A       LH   L  G    + F    L+  Y+ FG V  A +
Sbjct: 67  PDSFTFPPLVRAAPGPA---SAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYR 123

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VFD M E  V +WN ++SG  +N  A +A+ +   M+  GV  D  ++ SVLP C  L +
Sbjct: 124 VFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGD 183

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
             +  ++H       L   +   NAL+D+Y K G + EA  VF  M+ RD+VTW S+I+ 
Sbjct: 184 RALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISA 243

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC- 346
               G V  A+ LF  M   GV P+ LT+ SL SA +        +S+H +  ++  +  
Sbjct: 244 NEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVG 303

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
           ++I   A++DMYAK + +  + +VF     +  V WN ++ G + NGLA +A+ ++  M 
Sbjct: 304 DIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMH 363

Query: 407 V-EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
             E ++P   T  S+LPAY+ L  LQQ M +H   I+ G    V V+T LID+Y+KCG L
Sbjct: 364 NHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKL 423

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
             A  +F  +P +      W+ IIAG G+HGHG  A+SLF +M Q  ++P+ VTF S L 
Sbjct: 424 VEAMFLFEHMPRRSTG--PWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLA 481

Query: 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           ACSH GL+D+G   F+ M   +     A HYTC+VD+LGRAG+LDEA++ I++MP+KP  
Sbjct: 482 ACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDS 541

Query: 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645
           AVWGALLGAC IHGNVE+G+VA++ LFEL+PEN G YVL+S +Y+ + +W   + VR ++
Sbjct: 542 AVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLV 601

Query: 646 DEKGLRKAPAHSLIEVRNILT 666
             + L+K P  S +EV+  ++
Sbjct: 602 RRQNLQKTPGWSSMEVKGSVS 622


>gi|356557599|ref|XP_003547103.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31070,
           mitochondrial-like [Glycine max]
          Length = 601

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/581 (36%), Positives = 336/581 (57%), Gaps = 5/581 (0%)

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           +K +   G  H +L++F   L L  ++  ++  P VIKA +       G  LH   L TG
Sbjct: 23  IKSFLSKGLYHQTLQLF-SELHLCGHSSISFFLPSVIKASSSAQCHTFGTQLHCLALKTG 81

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
              +T V N +I MY  F +V +AR+VFD M     ++WN+LI+GY  N Y +EAL   +
Sbjct: 82  SHSETVVSNSIITMYFKFSDVGSARQVFDTMPHRDPITWNSLINGYLHNGYLEEALEALN 141

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA-GGRLGKNIAAWNALVDMYVKC 260
            +   G+ P    + SV+  CG     ++GR IH LV    R+G+++    ALVD Y +C
Sbjct: 142 DVYLLGLVPKPELLASVVSMCGRRMGSKIGRQIHALVVVNERIGQSMFLSTALVDFYFRC 201

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           G    A  VFD M  ++VV+WT+MI+G   + D   A   F+ MQ EGV PN +T  +LL
Sbjct: 202 GDSLMALRVFDGMEVKNVVSWTTMISGCIAHQDYDEAFACFRAMQAEGVCPNRVTSIALL 261

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC-NLVKLSFQVFARTSKKKT 379
           SAC+   ++K G+ +H +  +   E      +AL++MY +C   + L+  +F  +S +  
Sbjct: 262 SACAEPGFVKHGKEIHGYAFRHGFESCPSFSSALVNMYCQCGEPMHLAELIFEGSSFRDV 321

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           V W++I+      G + KA++LF +M  E +EPN  TL +++ A   L+ L+    +H Y
Sbjct: 322 VLWSSIIGSFSRRGDSFKALKLFNKMRTEEIEPNYVTLLAVISACTNLSSLKHGCGLHGY 381

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           + ++GF   + V   LI++Y+KCG L  + K+F E+P  ++D V WS +I+ YG+HG GE
Sbjct: 382 IFKFGFCFSISVGNALINMYAKCGCLNGSRKMFLEMP--NRDNVTWSSLISAYGLHGCGE 439

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
            A+ +F EM + GV+P+ +TF + L AC+H GL+ EG  +F  +  + +     +HY C+
Sbjct: 440 QALQIFYEMNERGVKPDAITFLAVLSACNHAGLVAEGQRIFKQVRADCEIPLTIEHYACL 499

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENP 619
           VDLLGR+G+L+ A ++ RTMP+KP+  +W +L+ AC +HG +++ E+ A  L   EP N 
Sbjct: 500 VDLLGRSGKLEYALEIRRTMPMKPSARIWSSLVSACKLHGRLDIAEMLAPQLIRSEPNNA 559

Query: 620 GNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           GNY LL+ +Y+    W D E VR+ M  + L+K    S IE
Sbjct: 560 GNYTLLNTIYAEHGHWLDTEQVREAMKLQKLKKCYGFSRIE 600



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 147/516 (28%), Positives = 253/516 (49%), Gaps = 25/516 (4%)

Query: 34  QLHAFIITSGPLF-THLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNG 89
           QLH   + +G    T + +S++  Y   S+V   R +FD M  R    +N+++  Y  NG
Sbjct: 72  QLHCLALKTGSHSETVVSNSIITMYFKFSDVGSARQVFDTMPHRDPITWNSLINGYLHNG 131

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG-FDMDTFV 148
              ++L+    +  LG   P       V+  C      K+G  +H  V++        F+
Sbjct: 132 YLEEALEALNDVYLLG-LVPKPELLASVVSMCGRRMGSKIGRQIHALVVVNERIGQSMFL 190

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
              L+  Y   G+   A +VFD M   +VVSW T+ISG   +    EA   F  M   GV
Sbjct: 191 STALVDFYFRCGDSLMALRVFDGMEVKNVVSWTTMISGCIAHQDYDEAFACFRAMQAEGV 250

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS-VNEAR 267
            P+  + +++L AC     ++ G+ IH            +  +ALV+MY +CG  ++ A 
Sbjct: 251 CPNRVTSIALLSACAEPGFVKHGKEIHGYAFRHGFESCPSFSSALVNMYCQCGEPMHLAE 310

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           L+F+  S RDVV W+S+I  ++  GD   AL LF  M+ E + PN +T+ +++SAC++L 
Sbjct: 311 LIFEGSSFRDVVLWSSIIGSFSRRGDSFKALKLFNKMRTEEIEPNYVTLLAVISACTNLS 370

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            LK G  LH +  K      + V  ALI+MYAKC  +  S ++F     +  V W+++++
Sbjct: 371 SLKHGCGLHGYIFKFGFCFSISVGNALINMYAKCGCLNGSRKMFLEMPNRDNVTWSSLIS 430

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA---YAILADLQ---QAMNIHCYLI 441
               +G   +A+++F +M    V+P+  T  ++L A     ++A+ Q   + +   C + 
Sbjct: 431 AYGLHGCGEQALQIFYEMNERGVKPDAITFLAVLSACNHAGLVAEGQRIFKQVRADCEIP 490

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
                  +E    L+D+  + G LE A +I   +P+K     +WS +++   +HG  + A
Sbjct: 491 L-----TIEHYACLVDLLGRSGKLEYALEIRRTMPMK-PSARIWSSLVSACKLHGRLDIA 544

Query: 502 VSLFKEMVQSGVQPNEV---TFTSALHACSHGGLLD 534
             L  ++++S  +PN     T  + ++A  HG  LD
Sbjct: 545 EMLAPQLIRS--EPNNAGNYTLLNTIYA-EHGHWLD 577



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 155/359 (43%), Gaps = 22/359 (6%)

Query: 282 TSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
           ++ I  +   G     L LF  +   G    S  + S++ A SS      G  LH   +K
Sbjct: 20  SNQIKSFLSKGLYHQTLQLFSELHLCGHSSISFFLPSVIKASSSAQCHTFGTQLHCLALK 79

Query: 342 QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVEL 401
                E +V  ++I MY K + V  + QVF     +  + WN+++ G +HNG   +A+E 
Sbjct: 80  TGSHSETVVSNSIITMYFKFSDVGSARQVFDTMPHRDPITWNSLINGYLHNGYLEEALEA 139

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI---RYGFLSVVEVSTGLIDI 458
              + +  + P    L S++         +    IH  ++   R G    + +ST L+D 
Sbjct: 140 LNDVYLLGLVPKPELLASVVSMCGRRMGSKIGRQIHALVVVNERIG--QSMFLSTALVDF 197

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           Y +CG    A ++F  + +  K++V W+ +I+G   H   + A + F+ M   GV PN V
Sbjct: 198 YFRCGDSLMALRVFDGMEV--KNVVSWTTMISGCIAHQDYDEAFACFRAMQAEGVCPNRV 255

Query: 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578
           T  + L AC+  G +  G ++  +    H   S     + +V++  + G      +LI  
Sbjct: 256 TSIALLSACAEPGFVKHGKEIHGYAFR-HGFESCPSFSSALVNMYCQCGEPMHLAELIFE 314

Query: 579 MPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF------ELEPENPGNYVLLSKLYSA 631
                   +W +++G+    G+       A  LF      E+EP    NYV L  + SA
Sbjct: 315 GSSFRDVVLWSSIIGSFSRRGD----SFKALKLFNKMRTEEIEP----NYVTLLAVISA 365


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/720 (32%), Positives = 384/720 (53%), Gaps = 89/720 (12%)

Query: 27  KSIAGTKQLHAFIITSG--------------PLFTH-------LRSSLVRAY---GHVSN 62
           +S+   +Q+H  II  G              PL +H       L + +V +Y   G  S+
Sbjct: 42  RSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTGVVASYLACGATSD 101

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
              + + +    +  +N +++ + + G    ++ +   MLR G   PD++T P  +KAC 
Sbjct: 102 ALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGT-KPDHFTLPYALKACG 160

Query: 123 DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH---SVVS 179
           +L   + G A HG +   GF+ + FV N L+AMY   G ++ A  VFD +       V+S
Sbjct: 161 ELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVIS 220

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLK------SGVEPDCASVVSVLPACGYLKEIEMGRM 233
           WN++++ + K +  + AL +F  M        +    D  S+V++LPAC  LK +   + 
Sbjct: 221 WNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQTKE 280

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG- 292
           IH          +    NAL+D Y KCGS+ +A  VF+ M  +DVV+W +M+ GY  +G 
Sbjct: 281 IHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGK 340

Query: 293 ------------------DV----------------RNALGLFQLMQFEGVRPNSLTIGS 318
                             DV                + AL  FQ M   G  PNS+TI S
Sbjct: 341 FGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIIS 400

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNL------------ECEVIVETALIDMYAKCNLVKL 366
           LLSAC+SL  L +G   HA+++K+ L              +++V  ALIDMY+KC   K 
Sbjct: 401 LLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKA 460

Query: 367 SFQVFARTSKKK--TVPWNAILAGCVHNGLARKAVELFRQMLVE--VVEPNDATLNSLLP 422
           +  +F    +++   V W  ++ G    G +  A++LF +M+ +   V PN  T++ +L 
Sbjct: 461 ARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILM 520

Query: 423 AYAILADLQQAMNIHCYLIRYGFL--SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           A A L+ L+    IH Y+ R+     SV  V+  LID+YSKCG +++A  +F  +P +++
Sbjct: 521 ACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNE 580

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
             V W+ +++GYGMHG G+ A+ +F +M ++G  P++++F   L+ACSH G++D+GLD F
Sbjct: 581 --VSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYF 638

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           + M  ++   + A HY C++DLL R+GRLD+A+  I+ MP++P+ A+W ALL AC +H N
Sbjct: 639 DIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSN 698

Query: 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           VEL E A   L  ++ EN G+Y L+S +Y+  RRWKD   +R +M + G++K P  S ++
Sbjct: 699 VELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQ 758


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/664 (34%), Positives = 373/664 (56%), Gaps = 14/664 (2%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GH 59
           P  HTLP        +V+  AA  +++  + +H      G     ++ S+LV+ Y   G 
Sbjct: 139 PDAHTLPY-------VVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGL 191

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           + N R  FD + ER   L+N +M    + G    ++++F  M R     P+  T    + 
Sbjct: 192 LGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNM-RASGCEPNFATLACFLS 250

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
            C   A    G  LH   +  G + +  V N L+AMY     +  A ++F+ M +  +V+
Sbjct: 251 VCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVT 310

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WN +ISG  +N    EA  +F  M +SG  PD  ++VS+LPA   L  ++ G+ +H  + 
Sbjct: 311 WNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIV 370

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
              +  ++   +ALVD+Y KC  V  A+ ++D     DVV  ++MI+GY LNG    AL 
Sbjct: 371 RNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQ 430

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           +F+ +  + ++PN++TI S+L  C+S+  L  G+ +H + ++   E +  VE+AL+DMYA
Sbjct: 431 MFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYA 490

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           KC  + LS  +F + S+K  V WN++++    NG  ++A++LFRQM +E ++ N+ T+++
Sbjct: 491 KCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISA 550

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
            L A A L  +     IH   I+    + +   + LID+Y+KCG+LE A ++F  +P  D
Sbjct: 551 ALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMP--D 608

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
           K+ V W+ II+ YG HG  + +VSL   M + G +P+ VTF + + AC+H GL++EG+ L
Sbjct: 609 KNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQL 668

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           F  M + +    R +H+ C+VDL  R+G+LD+A   I  MP KP   +WGALL AC +H 
Sbjct: 669 FQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRVHR 728

Query: 600 NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           NVEL ++A++ LF+L+P N G YVL+S + +   RW     VR +M +  + K P +S +
Sbjct: 729 NVELADIASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWV 788

Query: 660 EVRN 663
           +V N
Sbjct: 789 DVNN 792



 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 181/620 (29%), Positives = 302/620 (48%), Gaps = 56/620 (9%)

Query: 34  QLHAFIITSGPLFTHLRSSL----------VRAYGHVSNVRILFDEMSERSSFLYNTVMK 83
           Q+HA  + SG L  H   +L           R +     V       +  SS  +N +++
Sbjct: 53  QIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIR 112

Query: 84  MYAQNGASHDSLKMFLGML-RLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
            +   G  H ++  ++ M       +PD +T P V+K+C  L    LG  +H      G 
Sbjct: 113 GFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGL 172

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
             D +VG+ L+ MY + G +  AR  FD + E   V WN ++ G  K      A+ +F  
Sbjct: 173 ANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRN 232

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           M  SG EP+ A++   L  C    ++  G  +H L     L   +A  N L+ MY KC  
Sbjct: 233 MRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQC 292

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           +++A  +F+ M + D+VTW  MI+G   NG    A GLF  MQ  G RP+S+T+ SLL A
Sbjct: 293 LDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPA 352

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
            + L  LK+G+ +H + ++  +  +V + +AL+D+Y KC  V+++  ++        V  
Sbjct: 353 LTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIG 412

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           + +++G V NG++ +A+++FR +L + ++PN  T+ S+LP  A +A L     IH Y++R
Sbjct: 413 STMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLR 472

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
             +     V + L+D+Y+KCG L+ +H IF  + +  KD V W+ +I+ +  +G  + A+
Sbjct: 473 NAYERKCYVESALMDMYAKCGRLDLSHYIF--LKMSQKDEVTWNSMISSFSQNGKPQEAL 530

Query: 503 SLFKEMVQSGVQPNEVTFTSALHACS-----------HG--------------------- 530
            LF++M   G++ N +T ++AL AC+           HG                     
Sbjct: 531 DLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMY 590

Query: 531 ---GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP---LKPT 584
              G L+  L +F FM + ++       +  I+   G  G + E+  L+  M     KP 
Sbjct: 591 AKCGNLELALRVFEFMPDKNEV-----SWNSIISAYGAHGLVKESVSLLHGMQEEGYKPD 645

Query: 585 HAVWGALLGACVIHGNVELG 604
           H  + AL+ AC   G VE G
Sbjct: 646 HVTFLALISACAHAGLVEEG 665



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 146/496 (29%), Positives = 243/496 (48%), Gaps = 16/496 (3%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMD---TFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           V++ C       LG+ +H R +++G   D     +   L+ MY+     + A  VF A+ 
Sbjct: 38  VLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALP 97

Query: 174 EHSVVS---WNTLISGYFKNAYAKEALVVF--DWMLKSGVEPDCASVVSVLPACGYLKEI 228
             +  S   WN LI G+        A++ +   W   +   PD  ++  V+ +C  L  +
Sbjct: 98  RAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAM 157

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
            +GR++H       L  ++   +ALV MY   G +  AR  FD + ERD V W  M++G 
Sbjct: 158 SLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGC 217

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
              GDV  A+ LF+ M+  G  PN  T+   LS C++   L  G  LH+  +K  LE EV
Sbjct: 218 IKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEV 277

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            V   L+ MYAKC  +  ++++F    +   V WN +++GCV NGL  +A  LF  M   
Sbjct: 278 AVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRS 337

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
              P+  TL SLLPA   L  L+Q   +H Y++R      V + + L+DIY KC  +  A
Sbjct: 338 GARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMA 397

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
             ++     +  D+V+ S +I+GY ++G  E A+ +F+ +++  ++PN VT  S L  C+
Sbjct: 398 QNLYDA--ARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCA 455

Query: 529 HGGLLDEGLDLFNFMLEN--HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
               L  G  +  ++L N   + C      + ++D+  + GRLD ++ +   M  K    
Sbjct: 456 SMAALPLGQQIHGYVLRNAYERKCYVE---SALMDMYAKCGRLDLSHYIFLKMSQK-DEV 511

Query: 587 VWGALLGACVIHGNVE 602
            W +++ +   +G  +
Sbjct: 512 TWNSMISSFSQNGKPQ 527


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/645 (34%), Positives = 348/645 (53%), Gaps = 12/645 (1%)

Query: 23  YAATKSIAGTKQLHAFIITSG-----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFL 77
           +  + SI+   Q HA II  G      L T L   L    G +   R +F  +     FL
Sbjct: 27  FKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRL-SDLGAIYYARDIFLSVQRPDVFL 85

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N +M+ ++ N + H SL +F  + +  +  P++ TY   I A +     + G  +HG+ 
Sbjct: 86  FNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQA 145

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           ++ G D +  +G+ ++ MY  F  V+ ARKVFD M E   + WNT+ISGY KN    E++
Sbjct: 146 VVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESI 205

Query: 198 VVF-DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
            VF D + +S    D  +++ +LPA   L+E+ +G  IH L        +       + +
Sbjct: 206 QVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISL 265

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y KCG +     +F    + D+V + +MI+GY  NG+   +L LF+ +   G R  S T+
Sbjct: 266 YSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTL 325

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
            SL+     L  +    ++H + +K N      V TAL  +Y+K N ++ + ++F  + +
Sbjct: 326 VSLVPVSGHLMLI---YAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPE 382

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           K    WNA+++G   NGL   A+ LFR+M      PN  T+  +L A A L  L     +
Sbjct: 383 KSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWV 442

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H  +    F S + VST LI +Y+KCGS+  A ++F  +  K++  V W+ +I+GYG+HG
Sbjct: 443 HDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNE--VTWNTMISGYGLHG 500

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
            G+ A+++F EM+ SG+ P  VTF   L+ACSH GL+ EG ++FN M+  +       HY
Sbjct: 501 QGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHY 560

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
            C+VD+LGRAG L  A   I  M ++P  +VW  LLGAC IH +  L    ++ LFEL+P
Sbjct: 561 ACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDP 620

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +N G +VLLS ++SA R +  A  VR    ++ L KAP ++LIE+
Sbjct: 621 DNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEI 665


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/661 (34%), Positives = 363/661 (54%), Gaps = 10/661 (1%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRI 65
           P   H    LV+   +    +     H  +I  G    +++ +SL+  Y   GH  + R 
Sbjct: 45  PPDAHTFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARK 104

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD M +R+   + T++  Y + G    +  M+  M R G   P + T   ++    +L 
Sbjct: 105 VFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQG-IQPSSVTMLGLLSGVLELV 163

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             +    LH  V+  GF  D  + N ++ +Y   G V+ A+ +F+ M    V+SWN+L+S
Sbjct: 164 HLQ---CLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVS 220

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY +    +E L +   M   G+EPD  +  S++ A     ++ +G+M+H  +    L +
Sbjct: 221 GYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQ 280

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           +     +L+ MY+KCG+VN A  +F+ M  +DV++WT+MI+G   N     A+ +F+ M 
Sbjct: 281 DSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRML 340

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
              V P++ TI S+L+AC+ L     G S+H + ++Q ++ ++  + +L+ MYAKC  ++
Sbjct: 341 KSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLE 400

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            S  VF R S++  V WNAI++G   NG   KA+ LF +M      P+  T+ SLL A A
Sbjct: 401 QSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACA 460

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            +  L Q   IH ++ +      + + T L+D+YSKCG L SA K F  +P   +D+V W
Sbjct: 461 SIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMP--QQDLVSW 518

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           S IIAGYG HG GETA+ ++ + + +G+QPN V + S L ACSH GL+D+GL  F+ M +
Sbjct: 519 SSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTK 578

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
           +     R +H  CIVDLL RAGR++EAY   + M  KP+  V G LL AC   GNVELG+
Sbjct: 579 DFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGD 638

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           + A+ +  L+P N GNYV L+  Y++++RW     V   M    L+K P  S IE+   +
Sbjct: 639 IVAREIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTI 698

Query: 666 T 666
           T
Sbjct: 699 T 699



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 210/423 (49%), Gaps = 7/423 (1%)

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           S+N +I+         + L+ +  ML +   PD  +  S++ AC  L     G   H+ V
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
                  +     +L++ Y K G    AR VFD M +R+VV WT+MI  Y   G+   A 
Sbjct: 75  IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
            ++ +M+ +G++P+S+T+  LLS    L +L+    LHA  I+     +V +  +++++Y
Sbjct: 135 SMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQ---CLHACVIQYGFGSDVALANSMLNVY 191

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
            KC  V+ +  +F     +  + WN++++G    G  R+ ++L  +M  + +EP+  T  
Sbjct: 192 CKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFG 251

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           SL+ A A+ + L     +H +++R G      + T LI +Y KCG++ SA +IF    + 
Sbjct: 252 SLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEG--MM 309

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
            KD++ W+ +I+G   +   + AV++F+ M++S V P+  T  S L AC+  G    G  
Sbjct: 310 HKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTS 369

Query: 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
           +  ++L            + +V +  + G L+++  +   M  +     W A++     +
Sbjct: 370 VHGYILRQRIKLDIPSQNS-LVTMYAKCGHLEQSCSVFDRMSRRDI-VSWNAIVSGHAQN 427

Query: 599 GNV 601
           G++
Sbjct: 428 GHL 430



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 109/258 (42%), Gaps = 32/258 (12%)

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
           T  +NAI+      G     +  +  ML     P+  T  SL+ A   L      ++ H 
Sbjct: 13  TKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQ 72

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
            +I  G+ S   ++T LI+ YSK G  +SA K+F    + D+++V W+ +I  Y   G  
Sbjct: 73  RVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDT--MDDRNVVPWTTMIGCYTRAGEH 130

Query: 499 ETAVSLFKEMVQSGVQPNEVTF------------TSALHACSHGGLLDEGLDLFNFMLEN 546
           + A S++  M + G+QP+ VT                LHAC         + L N ML  
Sbjct: 131 DVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNV 190

Query: 547 HQTCSRADHYTCIVDLL---------------GRAGRLDEAYDLI---RTMPLKPTHAVW 588
           +  C R +    + +L+                + G + E   L+   +T  ++P    +
Sbjct: 191 YCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTF 250

Query: 589 GALLGACVIHGNVELGEV 606
           G+L+ A  +   + +G++
Sbjct: 251 GSLVSAAAMQSKLGVGKM 268


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/676 (34%), Positives = 365/676 (53%), Gaps = 70/676 (10%)

Query: 27  KSIAGTKQLHAFIITSGPL-----------FTHLRSSLVRAYGHVSNVRILFDEMSERSS 75
           +++   +Q+HA     G L           F     +L  AYG       LFD M  R S
Sbjct: 92  RNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYG-------LFDGMCVRDS 144

Query: 76  FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHG 135
             ++ ++  +A+ G   +    F  ++R G   PDNYT P VI+AC DL  + L +AL  
Sbjct: 145 VSWSVMVGGFAKVGDYINCFGTFRELIRCGA-RPDNYTLPFVIRACRDL--KNLQMAL-- 199

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
                            + MY+   E++ AR +FD M E  +V+W  +I GY +   A E
Sbjct: 200 -----------------VDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANE 242

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           +LV+F+ M + GV PD  ++V+V+ AC  L  +   R+I + +   +   ++    A++D
Sbjct: 243 SLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMID 302

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           MY KCG V  AR +FDRM E++V++W++MI  Y  +G  R AL LF++M   G+ P+ +T
Sbjct: 303 MYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKIT 362

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
           + SLL AC +   L + R +HA      +   +IV   L+  Y+    +  ++ +F    
Sbjct: 363 LASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMC 422

Query: 376 KKKTVPWNAILAG---------CVHN-------------------GLARKAVELFRQMLV 407
            + +V W+ ++ G         C                      G A +++ LF +M  
Sbjct: 423 VRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMRE 482

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           E V P+   + +++ A A L  + +A  I  Y+ R  F   V + T +ID+++KCG +ES
Sbjct: 483 EGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVES 542

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A +IF  +  ++K+++ WS +IA YG HG G  A+ LF  M++SG+ PN++T  S L+AC
Sbjct: 543 AREIFDRM--EEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYAC 600

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           SH GL++EGL  F+ M E++   +   HYTC+VDLLGRAGRLDEA  LI +M ++    +
Sbjct: 601 SHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGL 660

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           WGA LGAC  H +V L E AA  L EL+P+NPG+Y+LLS +Y+   RW+D    RD+M +
Sbjct: 661 WGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQ 720

Query: 648 KGLRKAPAHSLIEVRN 663
           + L+K P  + IEV N
Sbjct: 721 RRLKKIPGWTWIEVDN 736



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 128/287 (44%), Gaps = 37/287 (12%)

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           +SA  +   L + R +HA      +   ++V   LI  Y+    +  ++ +F     + +
Sbjct: 85  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 144

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           V W+ ++ G    G        FR+++     P++ TL  ++ A   L +LQ A      
Sbjct: 145 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMA------ 198

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
                          L+D+Y KC  +E A  +F +  ++++D+V W+V+I GY   G   
Sbjct: 199 ---------------LVDMYVKCREIEDARFLFDK--MQERDLVTWTVMIGGYAECGKAN 241

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGG------LLDEGLDLFNFMLENHQTCSRA 553
            ++ LF++M + GV P++V   + + AC+  G      ++D+ +    F L+        
Sbjct: 242 ESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLD-------V 294

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
              T ++D+  + G ++ A ++   M  K   + W A++ A   HG 
Sbjct: 295 ILGTAMIDMYAKCGCVESAREIFDRMEEKNVIS-WSAMIAAYGYHGQ 340


>gi|225438700|ref|XP_002277701.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
          Length = 1008

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/609 (35%), Positives = 350/609 (57%), Gaps = 7/609 (1%)

Query: 52   SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
            S+    G +++   +F +M  R+   +N+++  Y  NG    S+  F  M   G ++PD 
Sbjct: 400  SMYAKLGDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAFCDMQFEG-FDPDA 458

Query: 112  YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
             +   ++ AC+ L    LG A H       FD +  + N L+A Y + G++ ++ K+F  
Sbjct: 459  ISIVNILSACSKLEAILLGKAAHAFSFRKEFDSNLNISNALLAFYSDCGKLSSSFKLFQK 518

Query: 172  MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
            M   + +SWNTLISG   N   K+A+ +   M +  +E D  +++S++P C   + +  G
Sbjct: 519  MPLRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPICRVAENLIQG 578

Query: 232  RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
              +H          +++  NAL+ MY  CG +N  + +F+ M  R +V+W ++I GY  +
Sbjct: 579  MTLHGYAIKTGFACDVSLVNALISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFH 638

Query: 292  GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
                  +  F  M  EG +PN +T+ +LL +C +L    +G+S+HA+ ++  +  E  + 
Sbjct: 639  YLQNEVMASFCQMIREGQKPNYVTLLNLLPSCRTLL---QGKSIHAFAVRTGVIVETPII 695

Query: 352  TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
            T+LI MYA+   +     +F    K+    WNAI++  V    A+++V  F ++L   VE
Sbjct: 696  TSLISMYARFENINSFIFLFEMGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLHARVE 755

Query: 412  PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
            P+  T  SL+ A   L+ L  + ++  Y+I+ GF   + +S  LID++++CG++  A KI
Sbjct: 756  PDYITFLSLISACVQLSSLNLSNSVMAYVIQKGFDKHIVISNALIDLFARCGNISIAKKI 815

Query: 472  FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
            F  +    KD V WS +I GYG+HG  E A++L  +M  SG++P+ +T+ S L ACSHGG
Sbjct: 816  FEGL--SSKDAVSWSTMINGYGLHGDSEAALALLSQMRLSGMKPDGITYASVLSACSHGG 873

Query: 532  LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
             +D+G  +FN M+E      R +HY C+VDLLGR G+L+EAYD +  +P KP+ ++  +L
Sbjct: 874  FIDQGWMIFNSMVE-EGVPRRMEHYACMVDLLGRTGQLNEAYDFVEKLPCKPSVSLLESL 932

Query: 592  LGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651
            LGAC+IHGNV+LGE  +  LFEL+P+N G+YV+L  +Y+A  RW DA  VR  M+E+ LR
Sbjct: 933  LGACIIHGNVKLGEKISSLLFELDPKNSGSYVMLYNIYAAAGRWMDANRVRSDMEERQLR 992

Query: 652  KAPAHSLIE 660
            K P  SL+E
Sbjct: 993  KIPGFSLVE 1001



 Score =  292 bits (748), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 153/482 (31%), Positives = 268/482 (55%), Gaps = 6/482 (1%)

Query: 49  LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           ++++LV  Y   G +   R++ D++S+     +N ++  Y+ NG   +  ++   +  +G
Sbjct: 192 IQTALVDFYAKTGRMVKARLVLDKISQPDLVTWNALISGYSLNGFDKEVFEVLRQINEMG 251

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
              P+  T+  +I  CT +    +G ++HG V+ +GF  D F+   LI+MY   G +  A
Sbjct: 252 -LKPNVSTFASIIPLCTRMKCLDIGKSIHGFVVKSGFSSDEFLTPALISMYAGGGNLFIA 310

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           R +FD+  E +VV WN++IS Y +N  + EA  +F  MLK+ ++P+  + VS++P C   
Sbjct: 311 RDLFDSAAEKNVVIWNSMISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENS 370

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
                G+ +H  V   RL   ++   AL+ MY K G +N A  +F +M  R++++W SMI
Sbjct: 371 ANFWYGKSLHAHVMKYRLDSQLSVATALLSMYAKLGDLNSADFIFYQMPRRNLLSWNSMI 430

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           +GY  NG    ++  F  MQFEG  P++++I ++LSACS L  +  G++ HA++ ++  +
Sbjct: 431 SGYGHNGLWEASMDAFCDMQFEGFDPDAISIVNILSACSKLEAILLGKAAHAFSFRKEFD 490

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
             + +  AL+  Y+ C  +  SF++F +   +  + WN +++GCVHNG  +KAV L  +M
Sbjct: 491 SNLNISNALLAFYSDCGKLSSSFKLFQKMPLRNAISWNTLISGCVHNGDTKKAVALLHKM 550

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
             E +E +  TL S++P   +  +L Q M +H Y I+ GF   V +   LI +Y  CG +
Sbjct: 551 QQEKMELDLVTLISIIPICRVAENLIQGMTLHGYAIKTGFACDVSLVNALISMYFNCGDI 610

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
            +   +F  +P   + IV W+ +I GY  H      ++ F +M++ G +PN VT  + L 
Sbjct: 611 NAGKFLFEVMPW--RSIVSWNALITGYRFHYLQNEVMASFCQMIREGQKPNYVTLLNLLP 668

Query: 526 AC 527
           +C
Sbjct: 669 SC 670



 Score =  254 bits (648), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 162/567 (28%), Positives = 283/567 (49%), Gaps = 7/567 (1%)

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           F+ + + S FL N +++    +G   D L ++L    LG    D++T+P VIKACT L  
Sbjct: 112 FEAIEKPSVFLQNLMIRRLCDHGLFEDVLCVYLKCRVLG-CPSDDFTFPFVIKACTALGA 170

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
             +   +H  VL T F+ +  +   L+  Y   G +  AR V D + +  +V+WN LISG
Sbjct: 171 VWIAEGVHCIVLRTSFEENLVIQTALVDFYAKTGRMVKARLVLDKISQPDLVTWNALISG 230

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
           Y  N + KE   V   + + G++P+ ++  S++P C  +K +++G+ IH  V       +
Sbjct: 231 YSLNGFDKEVFEVLRQINEMGLKPNVSTFASIIPLCTRMKCLDIGKSIHGFVVKSGFSSD 290

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
                AL+ MY   G++  AR +FD  +E++VV W SMI+ YA N     A  +FQ M  
Sbjct: 291 EFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSMISAYAQNQKSSEAFKMFQQMLK 350

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
             ++PN +T  S++  C +      G+SLHA  +K  L+ ++ V TAL+ MYAK   +  
Sbjct: 351 ANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVMKYRLDSQLSVATALLSMYAKLGDLNS 410

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           +  +F +  ++  + WN++++G  HNGL   +++ F  M  E  +P+  ++ ++L A + 
Sbjct: 411 ADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAFCDMQFEGFDPDAISIVNILSACSK 470

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           L  +      H +  R  F S + +S  L+  YS CG L S+ K+F ++P+++   + W+
Sbjct: 471 LEAILLGKAAHAFSFRKEFDSNLNISNALLAFYSDCGKLSSSFKLFQKMPLRNA--ISWN 528

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            +I+G   +G  + AV+L  +M Q  ++ + VT  S +  C     L +G+ L  + ++ 
Sbjct: 529 TLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPICRVAENLIQGMTLHGYAIKT 588

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
              C        ++ +    G ++    L   MP +   + W AL+     H      EV
Sbjct: 589 GFACD-VSLVNALISMYFNCGDINAGKFLFEVMPWRSIVS-WNALITGYRFH--YLQNEV 644

Query: 607 AAKWLFELEPENPGNYVLLSKLYSAVR 633
            A +   +      NYV L  L  + R
Sbjct: 645 MASFCQMIREGQKPNYVTLLNLLPSCR 671



 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 165/580 (28%), Positives = 293/580 (50%), Gaps = 24/580 (4%)

Query: 33  KQLHAFIITSGPLFTH---LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYA 86
           K +H F++ SG  F+    L  +L+  Y   G++   R LFD  +E++  ++N+++  YA
Sbjct: 276 KSIHGFVVKSG--FSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSMISAYA 333

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           QN  S ++ KMF  ML+     P+  T+  +I  C + A    G +LH  V+    D   
Sbjct: 334 QNQKSSEAFKMFQQMLK-ANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVMKYRLDSQL 392

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
            V   L++MY   G++ +A  +F  M   +++SWN++ISGY  N   + ++  F  M   
Sbjct: 393 SVATALLSMYAKLGDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAFCDMQFE 452

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           G +PD  S+V++L AC  L+ I +G+  H          N+   NAL+  Y  CG ++ +
Sbjct: 453 GFDPDAISIVNILSACSKLEAILLGKAAHAFSFRKEFDSNLNISNALLAFYSDCGKLSSS 512

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
             +F +M  R+ ++W ++I+G   NGD + A+ L   MQ E +  + +T+ S++  C   
Sbjct: 513 FKLFQKMPLRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPICRVA 572

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             L +G +LH + IK    C+V +  ALI MY  C  +     +F     +  V WNA++
Sbjct: 573 ENLIQGMTLHGYAIKTGFACDVSLVNALISMYFNCGDINAGKFLFEVMPWRSIVSWNALI 632

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
            G   + L  + +  F QM+ E  +PN  TL +LLP+      L Q  +IH + +R G +
Sbjct: 633 TGYRFHYLQNEVMASFCQMIREGQKPNYVTLLNLLPS---CRTLLQGKSIHAFAVRTGVI 689

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
               + T LI +Y++  ++ S   +F E+  K+ DI +W+ I++ Y    + + +V+ F 
Sbjct: 690 VETPIITSLISMYARFENINSFIFLF-EMGGKE-DIALWNAIMSVYVQTKNAKESVTFFC 747

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE----NHQTCSRADHYTCIVDL 562
           E++ + V+P+ +TF S + AC     L+    +  ++++     H   S A     ++DL
Sbjct: 748 ELLHARVEPDYITFLSLISACVQLSSLNLSNSVMAYVIQKGFDKHIVISNA-----LIDL 802

Query: 563 LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
             R G +  A  +   +  K   + W  ++    +HG+ E
Sbjct: 803 FARCGNISIAKKIFEGLSSKDAVS-WSTMINGYGLHGDSE 841



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 138/523 (26%), Positives = 257/523 (49%), Gaps = 25/523 (4%)

Query: 83  KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA-WRKLGIALHGRVLITG 141
           K + +N + H+S             NP   ++  +   C ++   + LG  L  R L+  
Sbjct: 41  KQFIKNTSKHNS------------SNPKVTSFLRLFDLCRNIENLKPLGSVLIVRDLMR- 87

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
              D +V    I    + G  + A   F+A+ + SV   N +I     +   ++ L V+ 
Sbjct: 88  ---DEYVVAEFIISCFHLGAPELALSAFEAIEKPSVFLQNLMIRRLCDHGLFEDVLCVYL 144

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
                G   D  +   V+ AC  L  + +   +H +V      +N+    ALVD Y K G
Sbjct: 145 KCRVLGCPSDDFTFPFVIKACTALGAVWIAEGVHCIVLRTSFEENLVIQTALVDFYAKTG 204

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
            + +ARLV D++S+ D+VTW ++I+GY+LNG  +    + + +   G++PN  T  S++ 
Sbjct: 205 RMVKARLVLDKISQPDLVTWNALISGYSLNGFDKEVFEVLRQINEMGLKPNVSTFASIIP 264

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
            C+ +  L  G+S+H + +K     +  +  ALI MYA    + ++  +F   ++K  V 
Sbjct: 265 LCTRMKCLDIGKSIHGFVVKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVI 324

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           WN++++    N  + +A ++F+QML   ++PN  T  S++P     A+     ++H +++
Sbjct: 325 WNSMISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVM 384

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           +Y   S + V+T L+ +Y+K G L SA  IF ++P   ++++ W+ +I+GYG +G  E +
Sbjct: 385 KYRLDSQLSVATALLSMYAKLGDLNSADFIFYQMP--RRNLLSWNSMISGYGHNGLWEAS 442

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACS--HGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
           +  F +M   G  P+ ++  + L ACS     LL +    F+F  E     S  +    +
Sbjct: 443 MDAFCDMQFEGFDPDAISIVNILSACSKLEAILLGKAAHAFSFRKEFD---SNLNISNAL 499

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           +      G+L  ++ L + MPL+   + W  L+  CV +G+ +
Sbjct: 500 LAFYSDCGKLSSSFKLFQKMPLRNAIS-WNTLISGCVHNGDTK 541



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 199/396 (50%), Gaps = 10/396 (2%)

Query: 35  LHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           LH + I +G      L ++L+  Y   G ++  + LF+ M  RS   +N ++  Y  +  
Sbjct: 581 LHGYAIKTGFACDVSLVNALISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYL 640

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
            ++ +  F  M+R G+  P+  T   ++ +C  L     G ++H   + TG  ++T +  
Sbjct: 641 QNEVMASFCQMIREGQ-KPNYVTLLNLLPSCRTLLQ---GKSIHAFAVRTGVIVETPIIT 696

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            LI+MY  F  + +   +F+   +  +  WN ++S Y +   AKE++  F  +L + VEP
Sbjct: 697 SLISMYARFENINSFIFLFEMGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLHARVEP 756

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D  + +S++ AC  L  + +   +   V      K+I   NAL+D++ +CG+++ A+ +F
Sbjct: 757 DYITFLSLISACVQLSSLNLSNSVMAYVIQKGFDKHIVISNALIDLFARCGNISIAKKIF 816

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
           + +S +D V+W++MINGY L+GD   AL L   M+  G++P+ +T  S+LSACS   ++ 
Sbjct: 817 EGLSSKDAVSWSTMINGYGLHGDSEAALALLSQMRLSGMKPDGITYASVLSACSHGGFID 876

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP-WNAILAGC 389
           +G  +    +++ +   +     ++D+  +   +  ++    +   K +V    ++L  C
Sbjct: 877 QGWMIFNSMVEEGVPRRMEHYACMVDLLGRTGQLNEAYDFVEKLPCKPSVSLLESLLGAC 936

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
           + +G  +   E    +L E+   N  +   L   YA
Sbjct: 937 IIHGNVKLG-EKISSLLFELDPKNSGSYVMLYNIYA 971


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/661 (34%), Positives = 363/661 (54%), Gaps = 10/661 (1%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRI 65
           P   H    LV+   +    +     H  +I  G    +++ +SL+  Y   GH  + R 
Sbjct: 45  PPDAHTFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARK 104

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD M +R+   + T++  Y + G    +  M+  M R G   P + T   ++    +L 
Sbjct: 105 VFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQG-IQPSSVTMLGLLSGVLELV 163

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             +    LH  V+  GF  D  + N ++ +Y   G V+ A+ +F+ M    V+SWN+L+S
Sbjct: 164 HLQ---CLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVS 220

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY +    +E L +   M   G+EPD  +  S++ A     ++ +G+M+H  +    L +
Sbjct: 221 GYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQ 280

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           +     +L+ MY+KCG+VN A  +F+ M  +DV++WT+MI+G   N     A+ +F+ M 
Sbjct: 281 DSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRML 340

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
              V P++ TI S+L+AC+ L     G S+H + ++Q ++ ++  + +L+ MYAKC  ++
Sbjct: 341 KSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLDIPSQNSLVTMYAKCGHLE 400

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            S  VF R S++  V WNAI++G   NG   KA+ LF +M      P+  T+ SLL A A
Sbjct: 401 QSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACA 460

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            +  L Q   IH ++ +      + + T L+D+YSKCG L SA K F  +P   +D+V W
Sbjct: 461 SIGALHQGKWIHNFVTKSCLGPCILIDTALVDMYSKCGDLGSAQKCFDRMP--QQDLVSW 518

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           S IIAGYG HG GETA+ ++ + + +G+QPN V + S L ACSH GL+D+GL  F+ M +
Sbjct: 519 SSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACSHNGLVDQGLSFFHSMTK 578

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
           +     R +H  CIVDLL RAGR++EAY   + M  KP+  V G LL AC   GNVELG+
Sbjct: 579 DFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVLGILLDACRTTGNVELGD 638

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           + A+ +  L+P N GNYV L+  Y++++RW     V   M    L+K P  S IE+   +
Sbjct: 639 IVAREIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSLHLKKLPGWSFIELHGTI 698

Query: 666 T 666
           T
Sbjct: 699 T 699



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 210/423 (49%), Gaps = 7/423 (1%)

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           S+N +I+         + L+ +  ML +   PD  +  S++ AC  L     G   H+ V
Sbjct: 15  SYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRV 74

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
                  +     +L++ Y K G    AR VFD M +R+VV WT+MI  Y   G+   A 
Sbjct: 75  IVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAF 134

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
            ++ +M+ +G++P+S+T+  LLS    L +L+    LHA  I+     +V +  +++++Y
Sbjct: 135 SMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQ---CLHACVIQYGFGSDVALANSMLNVY 191

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
            KC  V+ +  +F     +  + WN++++G    G  R+ ++L  +M  + +EP+  T  
Sbjct: 192 CKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFG 251

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           SL+ A A+ + L     +H +++R G      + T LI +Y KCG++ SA +IF    + 
Sbjct: 252 SLVSAAAMQSKLGVGKMVHGHILRAGLEQDSHIETSLIGMYLKCGNVNSAFRIFEG--MM 309

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
            KD++ W+ +I+G   +   + AV++F+ M++S V P+  T  S L AC+  G    G  
Sbjct: 310 HKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTS 369

Query: 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
           +  ++L            + +V +  + G L+++  +   M  +     W A++     +
Sbjct: 370 VHGYILRQRIKLDIPSQNS-LVTMYAKCGHLEQSCSVFDRMSRRDI-VSWNAIVSGHAQN 427

Query: 599 GNV 601
           G++
Sbjct: 428 GHL 430



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 109/258 (42%), Gaps = 32/258 (12%)

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
           T  +NAI+      G     +  +  ML     P+  T  SL+ A   L      ++ H 
Sbjct: 13  TKSYNAIINRLSTAGAFCDVLLTYSSMLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQ 72

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
            +I  G+ S   ++T LI+ YSK G  +SA K+F    + D+++V W+ +I  Y   G  
Sbjct: 73  RVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDT--MDDRNVVPWTTMIGCYTRAGEH 130

Query: 499 ETAVSLFKEMVQSGVQPNEVTF------------TSALHACSHGGLLDEGLDLFNFMLEN 546
           + A S++  M + G+QP+ VT                LHAC         + L N ML  
Sbjct: 131 DVAFSMYNIMRRQGIQPSSVTMLGLLSGVLELVHLQCLHACVIQYGFGSDVALANSMLNV 190

Query: 547 HQTCSRADHYTCIVDLL---------------GRAGRLDEAYDLI---RTMPLKPTHAVW 588
           +  C R +    + +L+                + G + E   L+   +T  ++P    +
Sbjct: 191 YCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTF 250

Query: 589 GALLGACVIHGNVELGEV 606
           G+L+ A  +   + +G++
Sbjct: 251 GSLVSAAAMQSKLGVGKM 268


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/642 (34%), Positives = 359/642 (55%), Gaps = 7/642 (1%)

Query: 26  TKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTV 81
           TK +   KQ+H  ++ +G      + +SLV  Y   G   + R LFD + +RS   +N +
Sbjct: 23  TKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNAL 82

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
              Y  +    +++ +F  M+ L    P+ ++   +I  CT L     G  +HG ++  G
Sbjct: 83  FSCYVHSDMHGEAVSLFHDMV-LSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLG 141

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
           +D D F  N L+ MY   G ++ A  VFD + +  +VSWN +I+G   + Y   AL +  
Sbjct: 142 YDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLR 201

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
            M KSG+ P+  ++ S L AC  +   E+GR +H  +    +G +      L+DMY KC 
Sbjct: 202 EMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCN 261

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
           S+++ARLVF  M ERD++ W ++I+G++ N +   A  LF LM  EG+  N  T+ ++L 
Sbjct: 262 SMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLK 321

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
           + ++L      R +HA ++K   E +  V  +LID Y KC  V+ + +VF  +     V 
Sbjct: 322 SIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVL 381

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           + +++     +G   +A+ L+ +M    ++P+    +SLL A A L+  +Q   +H +++
Sbjct: 382 FTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHIL 441

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           ++GF+S +     L+++Y+KCGS+E A   FS IP+  + IV WS +I G   HG+G+ A
Sbjct: 442 KFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPV--RGIVSWSAMIGGLAQHGYGKEA 499

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561
           + LFK+M++ GV PN +T  S L AC+H GL+ E    FN M          +HY C++D
Sbjct: 500 LQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMID 559

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGN 621
           LLGRAG+L+ A +L+  MP +    VWGALLGA  IH N++LGE AA+ L  LEPE  G 
Sbjct: 560 LLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGT 619

Query: 622 YVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +VLL+ +Y++V  W     VR +M +  ++K P  S +EV++
Sbjct: 620 HVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKD 661



 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 165/498 (33%), Positives = 263/498 (52%), Gaps = 20/498 (4%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           + + +P V+KACT      LG  +HG V++TGFD D FV N L+ +Y   G    AR +F
Sbjct: 9   NEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLF 68

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           DA+ + SVVSWN L S Y  +    EA+ +F  M+ SG+ P+  S+ S++  C  L++  
Sbjct: 69  DAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSV 128

Query: 230 MGRMIHELVAGGRLGKNIAAW--NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
            GR IH  +   +LG +  A+  NALVDMY K G + +A  VFD +++ D+V+W ++I G
Sbjct: 129 QGRKIHGYLI--KLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAG 186

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
             L+     AL L + M   G+ PN  T+ S L AC+ +   + GR LH+  IK ++  +
Sbjct: 187 CVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSD 246

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
             +   LIDMY+KCN +  +  VF    ++  + WNA+++G   N    +A  LF  M  
Sbjct: 247 SFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHT 306

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           E +  N  TL+++L + A L        IH   ++ GF     V   LID Y KCG +E 
Sbjct: 307 EGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVED 366

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A ++F E PI   D+V+++ ++  Y   G GE A+ L+ EM   G++P+    +S L+AC
Sbjct: 367 ATRVFEESPI--VDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNAC 424

Query: 528 SHGGLLDEGLDL------FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581
           +     ++G  +      F FM +     S       +V++  + G +++A      +P+
Sbjct: 425 ASLSAYEQGKQVHVHILKFGFMSDIFAGNS-------LVNMYAKCGSIEDASCAFSRIPV 477

Query: 582 KPTHAVWGALLGACVIHG 599
           +     W A++G    HG
Sbjct: 478 RGI-VSWSAMIGGLAQHG 494



 Score =  198 bits (504), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 129/432 (29%), Positives = 217/432 (50%), Gaps = 35/432 (8%)

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           G++ +  +  SVL AC   K++ +G+ +H +V       +    N+LV +Y KCG   +A
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
           R +FD + +R VV+W ++ + Y  +     A+ LF  M   G+RPN  ++ S+++ C+ L
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGL 124

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
               +GR +H + IK   + +     AL+DMYAK  +++ +  VF   +K   V WNAI+
Sbjct: 125 EDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAII 184

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           AGCV +    +A+EL R+M    + PN  TL+S L A A +A  +    +H  LI+    
Sbjct: 185 AGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMG 244

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           S   +  GLID+YSKC S++ A  +F  +P  ++D++ W+ +I+G+  +   E A SLF 
Sbjct: 245 SDSFLGVGLIDMYSKCNSMDDARLVFKLMP--ERDMIAWNAVISGHSQNEEDEEAASLFP 302

Query: 507 EMVQSGVQPNEVTFTSALHACS-----------HGGLLDEGLDLFNF----MLENHQTC- 550
            M   G+  N+ T ++ L + +           H   L  G +  N+    +++ +  C 
Sbjct: 303 LMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCG 362

Query: 551 -----SRADHYTCIVDLL---------GRAGRLDEAYDLIRTMP---LKPTHAVWGALLG 593
                +R    + IVDL+          + G+ +EA  L   M    +KP   V  +LL 
Sbjct: 363 HVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLN 422

Query: 594 ACVIHGNVELGE 605
           AC      E G+
Sbjct: 423 ACASLSAYEQGK 434



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 164/332 (49%), Gaps = 12/332 (3%)

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M   G++ N     S+L AC+    L  G+ +H   +    + +  V  +L+ +YAKC  
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
              +  +F     +  V WNA+ +  VH+ +  +AV LF  M++  + PN+ +L+S++  
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
              L D  Q   IH YLI+ G+ S    +  L+D+Y+K G LE A  +F EI     DIV
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIA--KPDIV 178

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ IIAG  +H +   A+ L +EM +SG+ PN  T +SAL AC+   L + G  L + +
Sbjct: 179 SWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSL 238

Query: 544 LENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
           ++       +D +    ++D+  +   +D+A  + + MP +   A W A++     H   
Sbjct: 239 IKMDMG---SDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIA-WNAVISG---HSQN 291

Query: 602 ELGEVAAKWLFELEPENPG-NYVLLSKLYSAV 632
           E  E AA     +  E  G N   LS +  ++
Sbjct: 292 EEDEEAASLFPLMHTEGIGFNQTTLSTVLKSI 323


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/611 (36%), Positives = 349/611 (57%), Gaps = 5/611 (0%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +G++ +   +F +MSER+ F +N ++  YA+ G   +++ ++  ML +G   PD YT+P 
Sbjct: 142 FGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPDVYTFPC 201

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           V++ C  +     G  +H  V+  G+++D  V N LI MY+  G+VK+AR +FD M    
Sbjct: 202 VLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRD 261

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           ++SWN +ISGYF+N    E L +F  M    V+PD  ++ SV+ AC  L +  +GR IH 
Sbjct: 262 IISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHA 321

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            V       +I+  N+L  MY+  GS  EA  +F RM  +D+V+WT+MI+GY  N     
Sbjct: 322 YVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEK 381

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A+  +++M  + V+P+ +T+ ++LSAC++L  L  G  LH   IK  L   VIV   LI+
Sbjct: 382 AIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLIN 441

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY+KC  +  +  +F    +K  + W +I+AG   N    +A+  FRQM +  ++PN  T
Sbjct: 442 MYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQMKM-TLQPNAIT 500

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           L + L A A +  L     IH +++R G      +   L+D+Y +CG +  A   F+   
Sbjct: 501 LTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFNS-- 558

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
            + KD+  W++++ GY   G G   V LF  MV++ V+P+E+TF S L  C    ++ +G
Sbjct: 559 -QKKDVSSWNILLTGYSERGQGSVVVELFDRMVKARVRPDEITFISLLCGCGKSQMVRQG 617

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
           L  F+ M E +       HY C+VDLLGRAG L EA+  I+ MP+ P  AVWGALL AC 
Sbjct: 618 LMYFSKM-EEYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACR 676

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           IH N++LGE++A+ +FEL+  + G Y+LL  LY+   +W++   VR +M E GL      
Sbjct: 677 IHHNIDLGELSAQRIFELDKGSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGC 736

Query: 657 SLIEVRNILTA 667
           S +EV+  + A
Sbjct: 737 SWVEVKGKVHA 747



 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 162/508 (31%), Positives = 268/508 (52%), Gaps = 12/508 (2%)

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NG   +++K+   M  L     D   +  +++ C      + G  ++   L +   +   
Sbjct: 72  NGKLEEAMKLLNSMQEL-RVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMNSLSVE 130

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML-KS 206
           +GN  +AM++ FG +  A  VF  M E ++ SWN L+ GY K  Y  EA+ ++  ML   
Sbjct: 131 LGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVG 190

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           GV+PD  +   VL  CG + ++  GR +H  V       +I   NAL+ MYVKCG V  A
Sbjct: 191 GVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSA 250

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
           RL+FDRM  RD+++W +MI+GY  NG     L LF  M+   V P+ +T+ S++SAC  L
Sbjct: 251 RLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELL 310

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
              + GR +HA+ I      ++ V  +L  MY      + + ++F+R   K  V W  ++
Sbjct: 311 GDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMI 370

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           +G  +N L  KA++ +R M  + V+P++ T+ ++L A A L DL   + +H   I+   +
Sbjct: 371 SGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLI 430

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           S V V+  LI++YSKC  ++ A  IF  IP   K+++ W+ IIAG  ++     A+  F+
Sbjct: 431 SYVIVANNLINMYSKCKCIDKALDIFHNIP--RKNVISWTSIIAGLRLNNRCFEALIFFR 488

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLG 564
           +M  + +QPN +T T+AL AC+  G L  G ++   +L   +T    D +    ++D+  
Sbjct: 489 QMKMT-LQPNAITLTAALAACARIGALMCGKEIHAHVL---RTGVGLDDFLPNALLDMYV 544

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           R GR++ A++   +   K   + W  LL
Sbjct: 545 RCGRMNIAWNQFNSQ--KKDVSSWNILL 570



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 118/404 (29%), Positives = 208/404 (51%), Gaps = 12/404 (2%)

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243
           + G   N   +EA+ + + M +  V  D    V+++  C + +  E G  ++ +      
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMN 125

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
             ++   NA + M+V+ G++ +A  VF +MSER++ +W  ++ GYA  G    A+ L+  
Sbjct: 126 SLSVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHR 185

Query: 304 MQF-EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
           M +  GV+P+  T   +L  C  +  L RGR +H   ++   E ++ V  ALI MY KC 
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCG 245

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            VK +  +F R  ++  + WNA+++G   NG+  + ++LF  M    V+P+  TL S++ 
Sbjct: 246 DVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVIS 305

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A  +L D +   +IH Y+I  GF   + V   L  +Y   GS   A K+FS +    KDI
Sbjct: 306 ACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDC--KDI 363

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
           V W+ +I+GY  +   E A+  ++ M Q  V+P+E+T  + L AC+  G LD G++L   
Sbjct: 364 VSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKL 423

Query: 543 MLENHQTCSRADHYTCI----VDLLGRAGRLDEAYDLIRTMPLK 582
            ++     +R   Y  +    +++  +   +D+A D+   +P K
Sbjct: 424 AIK-----ARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRK 462


>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 597

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/551 (38%), Positives = 328/551 (59%), Gaps = 3/551 (0%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           Y  +++ C +    K G  +H  ++  GFD +  +   LI  Y+ FGE   ARKVFD M 
Sbjct: 40  YMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMP 99

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
           E +VVSW   ISGY KN + ++AL+VF  M ++GV  +  +  SVL AC  L+ +E G  
Sbjct: 100 ERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQ 159

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           IH  +   R   N+   +ALVD++ KCG++ +AR +F+ MSERDVV+W ++I GYA    
Sbjct: 160 IHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYAAQDF 219

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
             ++  +F  M  EGV P+  T+GS+L A S    L +   +H   I+      + +  +
Sbjct: 220 NDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQIHGIIIQLGFGSHIDLNGS 279

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN-GLARKAVELFRQMLVEVVEP 412
           LID YAK   +K +  ++    KK  + + AI+ G       +R+A++LF+ M    +E 
Sbjct: 280 LIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKDMQHIFMEI 339

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           +D T  ++L   A +A L     IH   I+Y     V     L+D+Y+K G +E A + F
Sbjct: 340 DDVTFCTMLNVCADIASLSIGRQIHALAIKYKPSYDVATGNALVDMYAKSGEIEDATRAF 399

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
            E+  K+K+++ W+ +I GYG HG+G  A++L+K+M   G++PN++TF S L ACSH GL
Sbjct: 400 YEM--KEKNVISWTSLITGYGKHGYGHEAIALYKKMEYEGLKPNDITFLSLLFACSHSGL 457

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
             EG + FN M+  +    RA+HY+C++DL  R G+L+EAY++I  M +KP  ++WGA+L
Sbjct: 458 TGEGWECFNNMITKYNILPRAEHYSCMIDLFARGGQLEEAYNMICKMNIKPNSSLWGAIL 517

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
           GAC I+G++ LGEVAA  L  ++PEN  NYV+L+ +Y+A   W  A  +R++M+ + L+K
Sbjct: 518 GACSIYGHMSLGEVAATHLLRMDPENSANYVVLAGIYAASGSWDKACRMRNLMEYRSLKK 577

Query: 653 APAHSLIEVRN 663
            P +S+I+  N
Sbjct: 578 IPGYSIIQSTN 588



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 151/515 (29%), Positives = 260/515 (50%), Gaps = 21/515 (4%)

Query: 6   HHTL--PKTTHL----VIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY- 57
           HH+   P+ THL     +K++Q    T+ +     +H+ II +G     HL + L+  Y 
Sbjct: 24  HHSPCEPELTHLSSSLYMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYV 83

Query: 58  --GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
             G   N R +FD M ER+   +   +  YA+NG   D+L +F  M R G    + +TY 
Sbjct: 84  KFGETINARKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAG-VRANQFTYG 142

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
            V++ACT L   + G+ +HG +    F  + FV + L+ ++   G ++ AR +F+ M E 
Sbjct: 143 SVLRACTGLRCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSER 202

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
            VVSWN +I GY    +  ++  +F  M+  GV PDC ++ SVL A      +     IH
Sbjct: 203 DVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQIH 262

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV- 294
            ++     G +I    +L+D Y K   +  A  ++  M ++DV+++T+++ GYA      
Sbjct: 263 GIIIQLGFGSHIDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYS 322

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
           R AL LF+ MQ   +  + +T  ++L+ C+ +  L  GR +HA  IK     +V    AL
Sbjct: 323 REALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLSIGRQIHALAIKYKPSYDVATGNAL 382

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           +DMYAK   ++ + + F    +K  + W +++ G   +G   +A+ L+++M  E ++PND
Sbjct: 383 VDMYAKSGEIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYEGLKPND 442

Query: 415 ATLNSLLPAYAILADLQQAMNIHCY---LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
            T  SLL  +A            C+   + +Y  L   E  + +ID++++ G LE A+ +
Sbjct: 443 ITFLSLL--FACSHSGLTGEGWECFNNMITKYNILPRAEHYSCMIDLFARGGQLEEAYNM 500

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGH---GETAVS 503
             ++ IK     +W  I+    ++GH   GE A +
Sbjct: 501 ICKMNIKPNS-SLWGAILGACSIYGHMSLGEVAAT 534


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/720 (32%), Positives = 385/720 (53%), Gaps = 89/720 (12%)

Query: 27  KSIAGTKQLHAFIITSG--------------PLFTH-------LRSSLVRAY---GHVSN 62
           +S+   +Q+H  II  G              PL +H       L + +V +Y   G   +
Sbjct: 42  RSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTGVVASYLACGATKD 101

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
              + + ++   +  +N +++ + + G    ++ +   MLR G   PD++T P  +KAC 
Sbjct: 102 ALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGT-KPDHFTLPYALKACG 160

Query: 123 DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH---SVVS 179
           +L     G ALHG +   GF+ + FV N L+AMY   G ++ A  VFD +       V+S
Sbjct: 161 ELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVIS 220

Query: 180 WNTLISGYFKNAYAKEALVVFDWM------LKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
           WN++++ + K +  + AL +F  M        +    D  S+V++LPAC  LK +   + 
Sbjct: 221 WNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKE 280

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           IH          +    NAL+D Y KCGS+N+A  VF+ M  +DVV+W +M+ GY  +G+
Sbjct: 281 IHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGN 340

Query: 294 V-----------------------------------RNALGLFQLMQFEGVRPNSLTIGS 318
                                               + AL  FQ M  +G  PNS+TI S
Sbjct: 341 FGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIIS 400

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNL------------ECEVIVETALIDMYAKCNLVKL 366
           LLSAC+SL  L +G  +HA+++K+ L              +++V  ALIDMY+KC   K 
Sbjct: 401 LLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKA 460

Query: 367 SFQVFARTSKKK--TVPWNAILAGCVHNGLARKAVELFRQMLVE--VVEPNDATLNSLLP 422
           +  +F    +++   V W  ++ G    G +  A+++F +M+ +   V PN  T++ +L 
Sbjct: 461 ARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILM 520

Query: 423 AYAILADLQQAMNIHCYLIRYGFL--SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           A A LA L+    IH Y+ R+     SV  V+  LID+YSKCG +++A  +F  +P +++
Sbjct: 521 ACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNE 580

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
             V W+ +++GYGMHG G+ A+ +F +M ++G  P++++F   L+ACSH G++D+GL+ F
Sbjct: 581 --VSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYF 638

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           + M  ++   + A+HY C++DLL R GRLD+A+  I+ MP++P+  +W ALL AC +H N
Sbjct: 639 DIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSN 698

Query: 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           VEL E A   L  ++ EN G+Y L+S +Y+  RRWKD   +R +M + G++K P  S ++
Sbjct: 699 VELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQ 758


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/554 (40%), Positives = 314/554 (56%), Gaps = 5/554 (0%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           T+  ++K C   A    G A+H ++   G   ++     L  MY        AR+VFD M
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 173 WEHSVVSWNTLISGYFKNAYAKEAL--VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
                V+WN +++GY +N     A+  VV     + G  PD  ++VSVLPAC   + +  
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
            R +H       L + +    A++D Y KCG+V  AR VFD M  R+ V+W +MI+GYA 
Sbjct: 138 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYAD 197

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           NG+   A+ LF  M  EGV     ++ + L AC  L YL   R +H   ++  L   V V
Sbjct: 198 NGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSV 257

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKT-VPWNAILAGCVHNGLARKAVELFRQMLVEV 409
             ALI  YAKC    L+ QVF     KKT + WNA++ G   N     A  LF +M +E 
Sbjct: 258 TNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLEN 317

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           V P+  TL S++PA A ++D  QA  IH Y IR+     V V T LID+YSKCG +  A 
Sbjct: 318 VRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIAR 377

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
           ++F     +D+ ++ W+ +I GYG HG G+ AV LF+EM  +G  PNE TF S L ACSH
Sbjct: 378 RLFDSA--RDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSH 435

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
            GL+DEG   F  M +++      +HY  +VDLLGRAG+LDEA+  I+ MP++P  +V+G
Sbjct: 436 AGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYG 495

Query: 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
           A+LGAC +H NVEL E +A+ +FEL PE    +VLL+ +Y+    WKD   VR  M++KG
Sbjct: 496 AMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKG 555

Query: 650 LRKAPAHSLIEVRN 663
           L+K P  S+I+++N
Sbjct: 556 LQKTPGWSIIQLKN 569



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 149/490 (30%), Positives = 243/490 (49%), Gaps = 8/490 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSS-LVRAY---GHVSNVRILFDEMSERS 74
           L++  AA   +A  + +HA +   G     + S+ L   Y      ++ R +FD M  R 
Sbjct: 22  LLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRMPSRD 81

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGML-RLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
              +N V+  YA+NG    +++  + M    G   PD+ T   V+ AC D         +
Sbjct: 82  RVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACREV 141

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H   L  G D    V   ++  Y   G V+AAR VFD M   + VSWN +I GY  N  A
Sbjct: 142 HAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNA 201

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
            EA+ +F  M++ GV+   ASV++ L ACG L  ++  R +HEL+    L  N++  NAL
Sbjct: 202 TEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNAL 261

Query: 254 VDMYVKCGSVNEARLVFDRMSERDV-VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           +  Y KC   + A  VF+ +  +   ++W +MI G+  N    +A  LF  MQ E VRP+
Sbjct: 262 ITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPD 321

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           S T+ S++ A + +    + R +H ++I+  L+ +V V TALIDMY+KC  V ++ ++F 
Sbjct: 322 SFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFD 381

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
               +  + WNA++ G   +G  + AVELF +M      PN+ T  S+L A +    + +
Sbjct: 382 SARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDE 441

Query: 433 AMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
                  + + YG    +E    ++D+  + G L+ A      +PI +  I V+  ++  
Sbjct: 442 GQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPI-EPGISVYGAMLGA 500

Query: 492 YGMHGHGETA 501
             +H + E A
Sbjct: 501 CKLHKNVELA 510



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 135/436 (30%), Positives = 214/436 (49%), Gaps = 36/436 (8%)

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           P   +  ++L  C    ++  GR +H +L A G   ++IA+  AL +MY KC    +AR 
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIAS-TALANMYFKCRRPADARR 72

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE--GVRPNSLTIGSLLSACSSL 326
           VFDRM  RD V W +++ GYA NG   +A+     MQ E  G RP+S+T+ S+L AC+  
Sbjct: 73  VFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADA 132

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             L   R +HA+ ++  L+  V V TA++D Y KC  V+ +  VF     + +V WNA++
Sbjct: 133 RALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMI 192

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
            G   NG A +A+ LF +M+ E V+  DA++ + L A   L  L +   +H  L+R G  
Sbjct: 193 DGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLS 252

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           S V V+  LI  Y+KC   + A ++F+E+  K K  + W+ +I G+  +   E A  LF 
Sbjct: 253 SNVSVTNALITTYAKCKRADLAAQVFNELGNK-KTRISWNAMILGFTQNECPEDAERLFA 311

Query: 507 EMVQSGVQPNEVTFTSALHACS-----------HGGLLDEGLDLFNFMLENHQTCSRADH 555
            M    V+P+  T  S + A +           HG  +   LD   ++L           
Sbjct: 312 RMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVL----------- 360

Query: 556 YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV-WGALLGACVIHGNVELGEVAAKWLFEL 614
            T ++D+  + GR+  A  L  +   +  H + W A++     HG    G+ A +   E+
Sbjct: 361 -TALIDMYSKCGRVSIARRLFDSA--RDRHVITWNAMIHGYGSHG---FGQAAVELFEEM 414

Query: 615 EPEN--PGNYVLLSKL 628
           +     P     LS L
Sbjct: 415 KGTGSLPNETTFLSVL 430



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 176/342 (51%), Gaps = 7/342 (2%)

Query: 1   MNGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY-- 57
           M G      P +  LV  ++   A  +++   +++HAF + +G     ++ ++++ AY  
Sbjct: 108 MQGEEGGERPDSVTLV-SVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCK 166

Query: 58  -GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
            G V   R +FD M  R+S  +N ++  YA NG + +++ +F  M++ G  +  + +   
Sbjct: 167 CGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEG-VDVTDASVLA 225

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW-EH 175
            ++AC +L +      +H  ++  G   +  V N LI  Y        A +VF+ +  + 
Sbjct: 226 ALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKK 285

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
           + +SWN +I G+ +N   ++A  +F  M    V PD  ++VSV+PA   + +    R IH
Sbjct: 286 TRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIH 345

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
                 +L +++    AL+DMY KCG V+ AR +FD   +R V+TW +MI+GY  +G  +
Sbjct: 346 GYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQ 405

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
            A+ LF+ M+  G  PN  T  S+L+ACS    +  G+   A
Sbjct: 406 AAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFA 447


>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 944

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/648 (34%), Positives = 351/648 (54%), Gaps = 8/648 (1%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVRILFDEMSE 72
           ++ L    +    +   K +H +++    +   + +SL+  Y   G V + + +FD M  
Sbjct: 203 ILNLAPAVSRLGDVGCCKSIHGYVVRRS-ICGVVSNSLIDMYCKCGDVHSAQRVFDRMGV 261

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           R    + T+M  Y +NG   + L++ L  +R G    +       +    ++   + G  
Sbjct: 262 RDDVSWATMMAGYVKNGCYFEGLQL-LHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKE 320

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           ++   L  G   D  V   ++ MY   GE+K AR++F ++    +V+W+  +S   +  Y
Sbjct: 321 IYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVETGY 380

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            +E L +F  M   G++PD A +  ++  C  +  I +G+++H       +  +I+    
Sbjct: 381 PREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAIKADMESDISMVTT 440

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           LV MY++      A  +F+RM  +D+V W ++ING+   GD   AL +F  +Q  G+ P+
Sbjct: 441 LVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPD 500

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           S T+  L SAC+ +  L  G  LH    K   E ++ V+ AL+DMYAKC  +    ++F 
Sbjct: 501 SGTMVGLFSACAIMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVERLFL 560

Query: 373 RTSK-KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
            T   K  V WN ++AG +HNG + +A+  FR+M +E V PN  T  ++LPA + L+ L+
Sbjct: 561 LTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSILR 620

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           +AM  H  +IR GFLS   +   LID+Y+KCG L  + K F E+  ++KD + W+ +++ 
Sbjct: 621 EAMAFHTCIIRMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEM--ENKDTISWNAMLSA 678

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           Y MHG GE AV+LF  M +S V+ + V++ S L AC H GL+ EG D+F  M E H    
Sbjct: 679 YAMHGQGELAVALFSVMQESNVRVDSVSYISVLSACRHSGLIQEGWDIFASMCEKHHVEP 738

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
             +HY C+VDLLG AG  DE   L+  M  +P   VWGALL AC IH NV LGEVA   L
Sbjct: 739 SMEHYACMVDLLGCAGLFDEVLSLLNKMTTEPDARVWGALLAACKIHSNVTLGEVAVHHL 798

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
            +LEP NP ++V+LS +Y+   RW DA   R  ++  GL+K P +S +
Sbjct: 799 LKLEPRNPVHHVVLSDIYAQCGRWNDARRTRSHINNHGLKKIPGYSWV 846



 Score =  248 bits (632), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 166/556 (29%), Positives = 280/556 (50%), Gaps = 24/556 (4%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G + N R +FD+M  +    +N ++   +Q+    ++L+MF  M   G +  D  +   +
Sbjct: 148 GCLDNARNVFDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQMEG-FEVDKVSILNL 206

Query: 118 IKACTDLAWRKLGIALHGRVL---ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
             A + L       ++HG V+   I G      V N LI MY   G+V +A++VFD M  
Sbjct: 207 APAVSRLGDVGCCKSIHGYVVRRSICGV-----VSNSLIDMYCKCGDVHSAQRVFDRMGV 261

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
              VSW T+++GY KN    E L +   M +  V+ +  +VV+ L     ++++E G+ I
Sbjct: 262 RDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKEI 321

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           +       L  +I     +V MY KCG + +AR +F  +  RD+V W++ ++     G  
Sbjct: 322 YNYALQMGLMSDIVVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVETGYP 381

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
           R  L +FQ+MQ+EG++P+   +  L+S C+ +  +  G+ +H + IK ++E ++ + T L
Sbjct: 382 REVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAIKADMESDISMVTTL 441

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           + MY +  L   +  +F R   K  V WN ++ G    G    A+E+F ++ +  + P+ 
Sbjct: 442 VSMYIRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPDS 501

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
            T+  L  A AI+ DL     +H  + + GF S + V   L+D+Y+KCGSL S  ++F  
Sbjct: 502 GTMVGLFSACAIMDDLDLGTCLHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVERLFL- 560

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
           +    KD V W+V+IAGY  +G+   A+S F+ M    V+PN VTF + L A S+  +L 
Sbjct: 561 LTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSILR 620

Query: 535 EGLDLFNFMLENHQTCSRADHYTC------IVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           E +         H    R    +C      ++D+  + G+L  +      M  K T + W
Sbjct: 621 EAMAF-------HTCIIRMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEMENKDTIS-W 672

Query: 589 GALLGACVIHGNVELG 604
            A+L A  +HG  EL 
Sbjct: 673 NAMLSAYAMHGQGELA 688



 Score =  238 bits (607), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 141/483 (29%), Positives = 250/483 (51%), Gaps = 16/483 (3%)

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           F ++   S  LYN+ +K Y++    H ++ ++  +L++G   PD +T+  V+KACT    
Sbjct: 56  FLQIKNPSLILYNSFIKAYSKFHHFHKAINLYHTILKIG-LKPDKFTFNFVLKACTSALD 114

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
              G+ ++  ++  G + D ++G  LI M+   G +  AR VFD M     V WN +ISG
Sbjct: 115 FHEGVNIYKDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISG 174

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
             ++    EAL +F  M   G E D  S++++ PA   L ++   + IH  V    +   
Sbjct: 175 LSQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSICGV 234

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           ++  N+L+DMY KCG V+ A+ VFDRM  RD V+W +M+ GY  NG     L L   M+ 
Sbjct: 235 VS--NSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRR 292

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
             V+ N + + + L   + +  L++G+ ++ + ++  L  +++V T ++ MYAKC  +K 
Sbjct: 293 GNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKK 352

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           + ++F     +  V W+A L+  V  G  R+ + +F+ M  E ++P+ A L+ L+     
Sbjct: 353 ARELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTE 412

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           ++++     +HCY I+    S + + T L+ +Y +      A  +F+ + I  KDIVVW+
Sbjct: 413 ISNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQI--KDIVVWN 470

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGGLLDE 535
            +I G+  +G    A+ +F  +  SG+ P+  T      AC+           HGG+   
Sbjct: 471 TLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEKS 530

Query: 536 GLD 538
           G +
Sbjct: 531 GFE 533



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 219/429 (51%), Gaps = 6/429 (1%)

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
           S++ +N+ I  Y K  +  +A+ ++  +LK G++PD  +   VL AC    +   G  I+
Sbjct: 63  SLILYNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDFHEGVNIY 122

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
           + +    L  ++    +L+DM+ K G ++ AR VFD+M  +D V W +MI+G + + +  
Sbjct: 123 KDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGLSQSLNPC 182

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            AL +F  MQ EG   + ++I +L  A S L  +   +S+H + +++++ C V V  +LI
Sbjct: 183 EALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSI-CGV-VSNSLI 240

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           DMY KC  V  + +VF R   +  V W  ++AG V NG   + ++L  +M    V+ N  
Sbjct: 241 DMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKV 300

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
            + + L   A + DL++   I+ Y ++ G +S + V+T ++ +Y+KCG L+ A ++F  +
Sbjct: 301 AVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARELF--L 358

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
            ++ +D+V WS  ++     G+    +S+F+ M   G++P++   +  +  C+    +  
Sbjct: 359 SLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISNIGL 418

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           G  +  + ++     S     T +V +  R      A  L   M +K    VW  L+   
Sbjct: 419 GKIMHCYAIKADME-SDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDI-VVWNTLINGF 476

Query: 596 VIHGNVELG 604
             +G+  L 
Sbjct: 477 TKYGDPHLA 485



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 168/330 (50%), Gaps = 6/330 (1%)

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F ++    ++ + S I  Y+       A+ L+  +   G++P+  T   +L AC+S    
Sbjct: 56  FLQIKNPSLILYNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDF 115

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
             G +++   +   LEC+V + T+LIDM+ K   +  +  VF +   K  V WNA+++G 
Sbjct: 116 HEGVNIYKDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGL 175

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
             +    +A+E+F +M +E  E +  ++ +L PA + L D+    +IH Y++R     V 
Sbjct: 176 SQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPAVSRLGDVGCCKSIHGYVVRRSICGV- 234

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            VS  LID+Y KCG + SA ++F  + ++D   V W+ ++AGY  +G     + L  +M 
Sbjct: 235 -VSNSLIDMYCKCGDVHSAQRVFDRMGVRDD--VSWATMMAGYVKNGCYFEGLQLLHKMR 291

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           +  V+ N+V   +AL   +    L++G +++N+ L+     S     T IV +  + G L
Sbjct: 292 RGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQ-MGLMSDIVVATPIVCMYAKCGEL 350

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            +A +L  ++  +   A W A L A V  G
Sbjct: 351 KKARELFLSLEGRDLVA-WSAFLSALVETG 379


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/681 (33%), Positives = 371/681 (54%), Gaps = 45/681 (6%)

Query: 27  KSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILF-----------DEMSERSS 75
           K++   KQLH  ++  G L     S+L +       +  L            D+ +  S 
Sbjct: 36  KTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGNMASL 95

Query: 76  FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHG 135
           F+YN +++ YA  G    ++ +++ ML +G   PD YT+P ++ AC+ +     G+ +HG
Sbjct: 96  FMYNCLIRGYASAGLGDQAILLYVQMLVMG-IVPDKYTFPFLLSACSKILALSEGVQVHG 154

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
            VL  G + D FV N LI  Y   G+V   RK+FD M E +VVSW +LI+GY     +KE
Sbjct: 155 AVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKE 214

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           A+ +F  M ++GVEP+  ++V V+ AC  LK++E+G+ +   ++   +  +    NALVD
Sbjct: 215 AVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVD 274

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           MY+KCG +  AR +FD  + +++V + ++++ Y  +    + L +   M  +G RP+ +T
Sbjct: 275 MYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVT 334

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
           + S ++AC+ L  L  G+S HA+ ++  LE    +  A+IDMY KC   + + +VF    
Sbjct: 335 MLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMP 394

Query: 376 KKKTVPWNAILAGCVHNG-------------------------------LARKAVELFRQ 404
            K  V WN+++AG V +G                               +  +A+ELFR+
Sbjct: 395 NKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFRE 454

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           M  + +  +  T+  +  A   L  L  A  +  Y+ +      +++ T L+D++S+CG 
Sbjct: 455 MQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGD 514

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
             SA  +F  +  + +D+  W+  I    M G+ E A+ LF EM++  V+P++V F + L
Sbjct: 515 PSSAMHVFKRM--EKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALL 572

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            ACSHGG +D+G  LF  M + H       HY C+VDLLGRAG L+EA DLI++MP++P 
Sbjct: 573 TACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPN 632

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
             VWG+LL AC  H NVEL   AA+ L +L PE  G +VLLS +Y++  +W D   VR  
Sbjct: 633 DVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQ 692

Query: 645 MDEKGLRKAPAHSLIEVRNIL 665
           M EKG++K P  S IEV+ ++
Sbjct: 693 MKEKGVQKVPGSSSIEVQGLI 713


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/645 (35%), Positives = 358/645 (55%), Gaps = 20/645 (3%)

Query: 33  KQLHAFIITSGPLF----------THLRSSLVRAY---GHVSNVRILFDEMSERSSF-LY 78
           K +H + + SG L+            L S LV  Y   G + + R +FD M  + +  ++
Sbjct: 319 KVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVW 378

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
           N +M  YA+     +SL +F  M  LG   PD +    ++K  T L+  + G+  HG ++
Sbjct: 379 NLIMGGYAKAAEFEESLLLFEQMHELG-ITPDEHALSCLLKCITCLSCARDGLVAHGYLV 437

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
             GF     V N LI+ Y     +  A  VFD M     +SWN++ISG   N    EA+ 
Sbjct: 438 KLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIE 497

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-VAGGRLGKNIAAWNALVDMY 257
           +F  M   G E D  +++SVLPAC       +GR++H   V  G +G+   A NAL+DMY
Sbjct: 498 LFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLA-NALLDMY 556

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
             C   +    +F  M++++VV+WT+MI  Y   G      GL Q M  +G++P+   + 
Sbjct: 557 SNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVT 616

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           S+L   +    LK+G+S+H + I+  +E  + V  AL++MY  C  ++ +  VF   + K
Sbjct: 617 SVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNK 676

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             + WN ++ G   N  A ++  LF  ML++  +PN  T+  +LPA A ++ L++   IH
Sbjct: 677 DIISWNTLIGGYSRNNFANESFSLFSDMLLQF-KPNTVTMTCILPAVASISSLERGREIH 735

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            Y +R GFL     S  L+D+Y KCG+L  A  +F  +    K+++ W+++IAGYGMHG 
Sbjct: 736 AYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRL--TKKNLISWTIMIAGYGMHGC 793

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
           G+ AV+LF++M  SGV+P+  +F++ L+AC H GL  EG   FN M + ++   +  HYT
Sbjct: 794 GKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYT 853

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617
           CIVDLL   G L EA++ I +MP++P  ++W +LL  C IH +V+L E  A  +F+LEPE
Sbjct: 854 CIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPE 913

Query: 618 NPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           N G YVLL+ +Y+   RW+  + +++ +  +GLR+    S IEVR
Sbjct: 914 NTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVR 958



 Score =  255 bits (652), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 168/545 (30%), Positives = 268/545 (49%), Gaps = 20/545 (3%)

Query: 19  LVQQYAATKSIAGTKQLHAFII--TSGPLFTHLRSSLVRAY---GHVSNVRILFDEMSER 73
           +VQ     +S+   ++ HA +   T G + + L   LV AY   G +   R++FDEM  R
Sbjct: 100 VVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPR 159

Query: 74  SS--FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
            +   ++ ++M  YA+ G   + + +F  M   G  +PD +    V+K    L     G 
Sbjct: 160 VADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCG-VSPDAHAVSCVLKCIASLGSITEGE 218

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +HG +   G      V N LIA+Y   G ++ A +VFD+M     +SWN+ ISGYF N 
Sbjct: 219 VIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNG 278

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL-------- 243
           +   A+ +F  M   G E    +V+SVLPAC  L    +G+++H       L        
Sbjct: 279 WHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQ 338

Query: 244 -GKNIAAWNALVDMYVKCGSVNEARLVFDRM-SERDVVTWTSMINGYALNGDVRNALGLF 301
            G + A  + LV MYVKCG +  AR VFD M S+ +V  W  ++ GYA   +   +L LF
Sbjct: 339 SGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLF 398

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
           + M   G+ P+   +  LL   + L   + G   H + +K     +  V  ALI  YAK 
Sbjct: 399 EQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKS 458

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
           N++  +  VF R   + T+ WN++++GC  NGL  +A+ELF +M ++  E +  TL S+L
Sbjct: 459 NMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVL 518

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
           PA A          +H Y ++ G +    ++  L+D+YS C    S ++IF  +    K+
Sbjct: 519 PACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMA--QKN 576

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           +V W+ +I  Y   G  +    L +EMV  G++P+    TS LH  +    L +G  +  
Sbjct: 577 VVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHG 636

Query: 542 FMLEN 546
           + + N
Sbjct: 637 YAIRN 641



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 150/514 (29%), Positives = 239/514 (46%), Gaps = 49/514 (9%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLI---TGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           +Y  V++ C +   R L  A     L+   TG  + + +G  L+  Y+  G++  AR VF
Sbjct: 96  SYCAVVQLCGEE--RSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVF 153

Query: 170 DAMWEH--SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           D M      V  W +L+S Y K    +E + +F  M   GV PD  +V  VL     L  
Sbjct: 154 DEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGS 213

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           I  G +IH L+    LG+  A  NAL+ +Y +CG + +A  VFD M  RD ++W S I+G
Sbjct: 214 ITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISG 273

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL--E 345
           Y  NG    A+ LF  M  EG   +S+T+ S+L AC+ L +   G+ +H +++K  L  +
Sbjct: 274 YFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWD 333

Query: 346 CEVI-------VETALIDMYAKCNLVKLSFQVF-ARTSKKKTVPWNAILAGCVHNGLARK 397
            E +       + + L+ MY KC  +  + +VF A  SK     WN I+ G        +
Sbjct: 334 LESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEE 393

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
           ++ LF QM    + P++  L+ LL     L+  +  +  H YL++ GF +   V   LI 
Sbjct: 394 SLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALIS 453

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
            Y+K   +++A  +F  +P   +D + W+ +I+G   +G    A+ LF  M   G + + 
Sbjct: 454 FYAKSNMIDNAVLVFDRMP--HQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDS 511

Query: 518 VTFTSALHACS-----------HGGLLDEGL----DLFNFMLENHQTCS----------- 551
            T  S L AC+           HG  +  GL     L N +L+ +  CS           
Sbjct: 512 TTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRN 571

Query: 552 ----RADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581
                   +T ++    RAG  D+   L++ M L
Sbjct: 572 MAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVL 605


>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 243/720 (33%), Positives = 378/720 (52%), Gaps = 79/720 (10%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSGPLFT---HLRSSLVRAYGHVSNVRI---LFDEMS 71
           +L+Q     +++   +Q+HA I+ +G  F    ++ + LV  Y       +   LF  + 
Sbjct: 84  ELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLR 143

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
            R+ F +  ++ +  + G S D+L  F+ M   G + PDN+  P V+KAC  L    LG 
Sbjct: 144 VRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVF-PDNFVLPNVLKACGSLQLIGLGK 202

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +HG VL  GF    FV + L+ MY   G ++ ARKVFD+M E +VV+WN++I GY +N 
Sbjct: 203 GVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNG 262

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
             +EA+ VF  M   G+EP   +V S L A   L  +  G+  H +     L  +    +
Sbjct: 263 LNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGS 322

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           ++++ Y K G + +A LVF RM E+DVVTW  +I+ Y  +  V  AL +  LM+ E +R 
Sbjct: 323 SIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRF 382

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM-------------- 357
           +S+T+ S+LSA +    +K G+  H + I++NLE +V+V  ++IDM              
Sbjct: 383 DSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVF 442

Query: 358 -----------------YAKCNL----VKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR 396
                            YA+  L    +KL +Q+   +     + WN+++ G + NG   
Sbjct: 443 DSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVN 502

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYA----------ILADLQQA------------- 433
           +A ++F QM     +PN  T  +L+   A              +Q+A             
Sbjct: 503 EAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVL 562

Query: 434 ------------MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
                         IH ++ R+ F   V V+T L+D+Y+KCGS++ A K+F  +    K+
Sbjct: 563 LACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMM--SSKE 620

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           + +++ +I+ Y +HG    A++LFK + + G++P+ +TFTS L ACSH GL++EGL+LF 
Sbjct: 621 LPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFA 680

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            M+  H      +HY C+V LL R G LDEA  LI TMP +P   + G+LL AC  H  +
Sbjct: 681 DMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEI 740

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           ELGE  +K LF+LEP N GNYV LS  Y+A  RW +  N+RD+M  +GLRK P  S I+ 
Sbjct: 741 ELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQT 800



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 156/330 (47%), Gaps = 28/330 (8%)

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN- 343
           I+    +G ++ ++ L   M+FE  +      G LL  C     L  G+ +HA  +K   
Sbjct: 51  ISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGD 110

Query: 344 -LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
                  VET L+  YAKC+  +++ ++F R   +    W AI+      G +  A+  F
Sbjct: 111 FFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGF 170

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
            +M    V P++  L ++L A   L  +     +H Y+++ GF + V VS+ L+D+Y KC
Sbjct: 171 IEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKC 230

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G LE A K+F  +   +K++V W+ +I GY  +G  + A+ +F +M   G++P  VT  S
Sbjct: 231 GVLEDARKVFDSMV--EKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVAS 288

Query: 523 ALHACSHGGLLDEG-----------LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571
            L A ++   L EG           LDL N +             + I++   + G +++
Sbjct: 289 FLSASANLDALIEGKQGHAIAILNSLDLDNIL------------GSSIINFYSKVGLIED 336

Query: 572 AYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
           A +L+ +  L+     W  L+ + V H  V
Sbjct: 337 A-ELVFSRMLEKDVVTWNLLISSYVQHHQV 365


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 237/617 (38%), Positives = 348/617 (56%), Gaps = 5/617 (0%)

Query: 51  SSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPD 110
           S LVR +G   +   +F +M ER  F +N ++  Y + G   ++L ++  M+  G   PD
Sbjct: 137 SMLVR-FGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAG-VRPD 194

Query: 111 NYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD 170
            YT+P V+++C  +   ++G  +H  VL  GF  +  V N L+ MY   G+V AARKVFD
Sbjct: 195 VYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFD 254

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
           +M     +SWN +I+G+F+N      L +F  ML+  V+P+  ++ SV  A G L +I  
Sbjct: 255 SMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITF 314

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
            + +H L        ++A  N+L+ MY   G + +AR VF RM  RD ++WT+MI+GY  
Sbjct: 315 AKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEK 374

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           NG    AL ++ LM+   V P+ +TI S L+AC+ L  L  G  LH     +     V+V
Sbjct: 375 NGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVV 434

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
             AL++MYAK   +  + +VF    +K  V W++++AG   N    +A+  FR ML + V
Sbjct: 435 TNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLAD-V 493

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           +PN  T  + L A A    L+    IH +++R G      +   LID+Y KCG    A  
Sbjct: 494 KPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWA 553

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
            F       KD+V W+++IAG+  HG+GETA+S F +MV+ G  P+EVTF + L ACS G
Sbjct: 554 QFC--AHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSRG 611

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           G++ EG +LF+ M + +       HY C+VDLL R G+L EAY+ I  MP+ P  AVWGA
Sbjct: 612 GMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVWGA 671

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LL  C IH +VELGE+AAK++ ELEP + G +VLL  LY+    W     VR  M EKGL
Sbjct: 672 LLNGCRIHRHVELGELAAKYVLELEPNDAGYHVLLCDLYADAGIWDKLARVRKTMREKGL 731

Query: 651 RKAPAHSLIEVRNILTA 667
                 S +EV+ ++ A
Sbjct: 732 DHDSGCSWVEVKGVVHA 748



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 165/520 (31%), Positives = 258/520 (49%), Gaps = 21/520 (4%)

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK-----LGIALHGRVLITGFDMD 145
           SH  L   L +L      PD   Y  + + C    WR+     L    H       F + 
Sbjct: 74  SHGQLAQALWLLESSAEPPDEDAYVALFRLCE---WRRAVEPGLRACAHADDRHAWFGLR 130

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
             +GN +++M + FGE   A +VF  M E  V SWN ++ GY K    +EAL ++  M+ 
Sbjct: 131 --LGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMW 188

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
           +GV PD  +   VL +CG + +  MGR +H  V      + +   NAL+ MY KCG V  
Sbjct: 189 AGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVA 248

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           AR VFD M+  D ++W +MI G+  NG+    L LF  M  + V+PN +TI S+  A   
Sbjct: 249 ARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGL 308

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           L  +   + +H   +K+    +V    +LI MYA   ++  +  VF+R   +  + W A+
Sbjct: 309 LSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAM 368

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           ++G   NG   KA+E++  M V  V P+D T+ S L A A L  L   + +H      GF
Sbjct: 369 ISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGF 428

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
           +S V V+  L+++Y+K   ++ A ++F  +P  +KD+V WS +IAG+  +     A+  F
Sbjct: 429 MSYVVVTNALLEMYAKSKRIDKAIEVFKCMP--EKDVVSWSSMIAGFCFNHRNFEALYYF 486

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA-DHY--TCIVDL 562
           + M+ + V+PN VTF +AL AC+  G L  G ++   +L     C  A + Y    ++DL
Sbjct: 487 RHML-ADVKPNSVTFIAALAACAATGALRSGKEIHAHVLR----CGIAYEGYLPNALIDL 541

Query: 563 LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
             + G+   A+        K     W  ++   V HGN E
Sbjct: 542 YVKCGQTGYAWAQFCAHGAKDV-VSWNIMIAGFVAHGNGE 580


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/617 (38%), Positives = 348/617 (56%), Gaps = 5/617 (0%)

Query: 51  SSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPD 110
           S LVR +G   +   +F +M ER  F +N ++  Y ++G   ++L ++  M+  G   PD
Sbjct: 131 SMLVR-FGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMWAG-VRPD 188

Query: 111 NYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD 170
            YT+P V+++C  +   ++G  +H  VL  GF  +  V N L+ MY   G+V AARKVFD
Sbjct: 189 VYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMAARKVFD 248

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
           +M     +SWN +I+G+F+N      L +F  ML   V+P+  ++ SV  A G L ++  
Sbjct: 249 SMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTF 308

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
            + +H L        ++A  N+L+ MY   G + +AR VF RM  RD +TWT+MI+GY  
Sbjct: 309 AKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEK 368

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           NG    AL ++ LM+   V P+ +TI S L+AC+ L  L  G  LH     +     ++V
Sbjct: 369 NGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVV 428

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
             A+++MYAK   +  + +VF    +K  V W++++AG   N    +A+  FR ML + V
Sbjct: 429 TNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHMLAD-V 487

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           +PN  T  + L A A    L+    IH +++R G      +   LID+Y KCG    A  
Sbjct: 488 KPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWA 547

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
            F       KD+V W+++IAG+  HGHG+TA+S F +MV+ G  P+EVTF + L ACS G
Sbjct: 548 QFC--AHGAKDVVSWNIMIAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRG 605

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           G++ EG +LF+ M E +       HY C+VDLL RAG+L EAY+ I  MP+ P  AVWGA
Sbjct: 606 GMVSEGWELFHSMTEKYSIVPNLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGA 665

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LL  C IH +VELGE+AAK++  LEP + G +VLL  LY+    W     VR  M EKGL
Sbjct: 666 LLNGCRIHRHVELGELAAKYVLALEPNDAGYHVLLCDLYADACLWDKLARVRKTMREKGL 725

Query: 651 RKAPAHSLIEVRNILTA 667
                 S +EV+ ++ A
Sbjct: 726 DHDSGCSWVEVKGVVHA 742



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 141/435 (32%), Positives = 224/435 (51%), Gaps = 13/435 (2%)

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK-----LGIALHGRVLITGFDMD 145
           SH  L   L +L      PD   Y  + + C    WR+     L    H       F + 
Sbjct: 68  SHGQLAQALWLLESSAEPPDEDAYVALFRLCE---WRRAVEPGLRACAHADDRHAWFGLR 124

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
             +GN +++M + FGE   A +VF  M E  V SWN ++ GY K+    EAL ++  M+ 
Sbjct: 125 --LGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMW 182

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
           +GV PD  +   VL +CG + +  MGR +H  V     G+ +   NAL+ MY KCG V  
Sbjct: 183 AGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVMA 242

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           AR VFD M+  D ++W +MI G+  NG+    L LF  M  + V+PN +TI S+  A   
Sbjct: 243 ARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGL 302

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           L  +   + +H   +K+    +V    +LI MYA   +++ +  VF+R   +  + W A+
Sbjct: 303 LSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAM 362

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           ++G   NG   KA+E++  M V  V P+D T+ S L A A L  L   + +H      GF
Sbjct: 363 ISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGF 422

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
           +S + V+  ++++Y+K   ++ A ++F    + +KD+V WS +IAG+  +     A+  F
Sbjct: 423 ISYIVVTNAILEMYAKSKRIDKAIEVFK--CMHEKDVVSWSSMIAGFCFNHRNFEALYYF 480

Query: 506 KEMVQSGVQPNEVTF 520
           + M+ + V+PN VTF
Sbjct: 481 RHML-ADVKPNSVTF 494


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/707 (32%), Positives = 380/707 (53%), Gaps = 52/707 (7%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAAT------KSIAGTKQLHAFIITSG----PL-FTHLRSS 52
           P+   LP    L I    + + T      K++   KQLH+ I  +G    PL  T+L SS
Sbjct: 15  PTSVALPNQNELKILTKHRSSPTGSFKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISS 74

Query: 53  LVR-------AYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
                      Y   +    + D     + ++++++++ ++  G  + ++ +F  ++ +G
Sbjct: 75  CTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMG 134

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
              PDN+T+P V+ ACT  A    G  +HG ++  GF+ D FV N LI  Y   GE+   
Sbjct: 135 AV-PDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCM 193

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           R+VFD M E +VVSW +LI GY K    KEA+ +F  M++ G+ P+  ++V V+ AC  L
Sbjct: 194 RRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKL 253

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           +++++G  +   +    L  N    NALVDMY+KCG++++AR +FD   ++++V + +++
Sbjct: 254 QDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIM 313

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           + Y   G  R  L +   M   G RP+ +T+ S +SACS L  +  G+  H + ++  LE
Sbjct: 314 SNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLE 373

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG------------ 393
               V  A+I+MY KC   +++ +VF R   K  V WN+++AG V NG            
Sbjct: 374 GWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAM 433

Query: 394 -------------------LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
                              + ++A+ELFR M  E +  +  T+  +  A   L  L  A 
Sbjct: 434 PDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAK 493

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            IH Y+ +      + + T L+D++++CG  +SA ++F+++    +D+  W+  I    M
Sbjct: 494 WIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMV--KRDVSAWTAAIGAMAM 551

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
            G+G  A+ LF EM+Q G++P+ V F + L A SHGGL+++G  +F  M + +    +A 
Sbjct: 552 EGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAV 611

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HY C+VDLLGRAG L EA  LI +M ++P   +WG+LL AC +H NV++   AA+ + EL
Sbjct: 612 HYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISEL 671

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +PE  G +VLLS +Y++  RW D   VR  + EKG  K P  S IE+
Sbjct: 672 DPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEI 718


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/617 (37%), Positives = 349/617 (56%), Gaps = 5/617 (0%)

Query: 51  SSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPD 110
           S LVR +G + +   +F +M ER  F +N ++  Y + G   ++L ++  ML  G   PD
Sbjct: 139 SMLVR-FGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG-MRPD 196

Query: 111 NYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD 170
            YT+P V++ C  +   ++G  +H  VL  GF  +  V N L+ MY   G++ AARKVFD
Sbjct: 197 VYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFD 256

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
            M     +SWN +I+G+F+N   +  L +F  ML++ V+P+  ++ SV  A G L E+  
Sbjct: 257 GMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGF 316

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
            + +H          ++A  N+L+ MY   G + +A  +F RM  +D ++WT+MI+GY  
Sbjct: 317 AKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEK 376

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           NG    AL ++ LM+   V P+ +TI S L+AC+ L  L  G  LH     +     V+V
Sbjct: 377 NGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVV 436

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
             AL++MYAK   +  + +VF   ++K  V W++++AG   N  + +A+  FR ML   V
Sbjct: 437 ANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGH-V 495

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           +PN  T  + L A A    L+    IH Y++R G  S   V   L+D+Y KCG    A  
Sbjct: 496 KPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWA 555

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
            FS     +KD+V W+++++G+  HG G+ A+SLF +MV+ G  P+EVTF + L ACS  
Sbjct: 556 QFSV--HSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRA 613

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           G++ +G +LF+ M E         HY C+VDLL R G+L EAY+LI  MP+KP  AVWGA
Sbjct: 614 GMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGA 673

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LL  C IH +VELGE+AAK + ELEP +   +VLL  LY+   +W     VR  M EKGL
Sbjct: 674 LLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGL 733

Query: 651 RKAPAHSLIEVRNILTA 667
            +    S +EV+ +  A
Sbjct: 734 EQDNGCSWVEVKGVTHA 750



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 160/520 (30%), Positives = 254/520 (48%), Gaps = 14/520 (2%)

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL---GIALHGRVLITGFDMDTF 147
           SH  L   L +L      PD   Y  + + C    WR+    G+    R           
Sbjct: 76  SHGQLAQALWLLESSPEPPDEGAYVALFRLCE---WRRAVDAGMRACARADAEHPSFGLR 132

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           +GN +++M + FGE+  A +VF  M E  V SWN ++ GY K  + +EAL ++  ML +G
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG 192

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           + PD  +   VL  CG + +  MGR +H  V     G  +   NALV MY KCG +  AR
Sbjct: 193 MRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAAR 252

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VFD M+  D ++W +MI G+  N +    L LF  M    V+PN +TI S+  A   L 
Sbjct: 253 KVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLS 312

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            +   + +H + +K+    +V    +LI MY     +  + ++F+R   K  + W A+++
Sbjct: 313 EVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMIS 372

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G   NG   KA+E++  M +  V P+D T+ S L A A L  L   + +H      GF+ 
Sbjct: 373 GYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIR 432

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            V V+  L+++Y+K   ++ A ++F    + +KD+V WS +IAG+  +     A+  F+ 
Sbjct: 433 YVVVANALLEMYAKSKHIDKAIEVFKF--MAEKDVVSWSSMIAGFCFNHRSFEALYYFRY 490

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M+   V+PN VTF +AL AC+  G L  G ++  ++L      S       ++DL  + G
Sbjct: 491 ML-GHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRC-GIGSEGYVPNALLDLYVKCG 548

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVA 607
           +   A+        K     W  +L   V HG   LG++A
Sbjct: 549 QTSYAWAQFSVHSEKDV-VSWNIMLSGFVAHG---LGDIA 584



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 58/284 (20%), Positives = 114/284 (40%), Gaps = 60/284 (21%)

Query: 7   HTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSN 62
           H  P +   +  L    AAT ++   K++HA+++  G     ++ ++L+  Y   G  S 
Sbjct: 494 HVKPNSVTFIAAL-SACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSY 552

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
               F   SE+    +N ++  +  +G    +L +F  M+ +GE+ PD  T+  ++ AC+
Sbjct: 553 AWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEH-PDEVTFVALLCACS 611

Query: 123 DLAWRKLGIALHGRVLITGFDMDT----FVGN-----CLIAMYMNFGEVKAARKVFDAMW 173
                + G+ + G  L   F M T     V N     C++ +    G++  A  + + M 
Sbjct: 612 -----RAGMVIQGWEL---FHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRM- 662

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
                                             ++PD A   ++L  C   + +E+G +
Sbjct: 663 ---------------------------------PIKPDAAVWGALLNGCRIHRHVELGEL 689

Query: 234 IHELVAGGRLGKNIAAWNALV-DMYVKCGSVNEARLVFDRMSER 276
             +++    L  N  A++ L+ D+Y   G   +   V   M E+
Sbjct: 690 AAKVIL--ELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREK 731


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/617 (37%), Positives = 347/617 (56%), Gaps = 5/617 (0%)

Query: 51  SSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPD 110
           S LVR +G   +   +F +M ER  F +N ++  Y + G   ++L ++  ML  G   PD
Sbjct: 137 SMLVR-FGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGA-RPD 194

Query: 111 NYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD 170
            YT+P V+++C  +    +G  +H  VL  G  ++  V N L+ MY   G+V+AARKVFD
Sbjct: 195 VYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFD 254

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
            M     +SWN +I+G+F+N   +  L +F  ML+  VEP+  ++ SV  A G L +++ 
Sbjct: 255 GMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDF 314

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
            + IH L        ++A  N+L+ MY   G + EA  VF RM  RD ++WT+MI+GY  
Sbjct: 315 AKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEK 374

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           NG    AL ++ LM+   V P+ +T+ S L+AC+SL  L  G  LH     +     ++V
Sbjct: 375 NGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVV 434

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
             AL++MYAK  +++ + +VF     K  + W++++AG   N    +A+  FR ML +V 
Sbjct: 435 ANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHMLADV- 493

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           +PN  T  + L A A    L+    IH +++R G  S   V   L+D+Y KCG    A  
Sbjct: 494 KPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWA 553

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
            F       KD+V W++++AG+  HGHG+ A+S F EM+++G  P+EVTF + L  CS  
Sbjct: 554 QFGAH--GTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRA 611

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           G++ +G +LF+ M E +       HY C+VDLL R GRL E Y+ I  MP+ P  AVWGA
Sbjct: 612 GMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGA 671

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LL  C IH N+ELGE+AAK + ELEP + G +VLLS LY+    W +   VR  M  KGL
Sbjct: 672 LLNGCRIHRNIELGELAAKIVLELEPNDAGYHVLLSDLYADAGMWAEVSKVRKTMRVKGL 731

Query: 651 RKAPAHSLIEVRNILTA 667
                 S +EV+  + A
Sbjct: 732 EHDYGCSWVEVKGAIHA 748



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 175/550 (31%), Positives = 269/550 (48%), Gaps = 20/550 (3%)

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDM--DTF- 147
           +H  L+  L +L      PD   Y  +   C    WR+   A HG       D    TF 
Sbjct: 74  AHGELQQALWLLESSPEPPDEDAYVALFHLCE---WRR--AAEHGLRACGHADAAHGTFG 128

Query: 148 --VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
             +GN +++M + FGE   A KVF  M E  V SWN ++ GY K  + +EAL ++  ML 
Sbjct: 129 LRLGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLW 188

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
           +G  PD  +   VL +CG + ++ MGR +H  V    LG  +   NALV MY KCG V  
Sbjct: 189 AGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEA 248

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           AR VFD MS  D ++W +MI G+  N +    L LF  M  + V PN +TI S+  A   
Sbjct: 249 ARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGL 308

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           L  L   + +HA  +K+    +V    +LI MY+    +  +  VF+R   +  + W A+
Sbjct: 309 LSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAM 368

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           ++G   NG   KA+E++  M V  V P+D T+ S L A A L  L   + +H      GF
Sbjct: 369 ISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGF 428

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
           +  + V+  L+++Y+K   +E A ++F  +P  DKD++ WS +IAG+  +     A+  F
Sbjct: 429 IRYIVVANALVEMYAKSKIIEKAIEVFKYMP--DKDVISWSSMIAGFCFNHKNFEALYYF 486

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
           + M+ + V+PN VTF +AL AC+  G L  G ++   +L      S       ++DL  +
Sbjct: 487 RHML-ADVKPNSVTFIAALAACAATGSLRCGKEIHAHVL-RQGIASEGYVPNALLDLYVK 544

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL--EPENPGNYV 623
            G+   A+        K     W  +L   V HG+   G++A  +  E+    E+P    
Sbjct: 545 CGQTGYAWAQFGAHGTKDV-VSWNIMLAGFVAHGH---GDIALSFFNEMLETGEHPDEVT 600

Query: 624 LLSKLYSAVR 633
            ++ L    R
Sbjct: 601 FVALLCGCSR 610


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/617 (37%), Positives = 349/617 (56%), Gaps = 5/617 (0%)

Query: 51  SSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPD 110
           S LVR +G + +   +F +M ER  F +N ++  Y + G   ++L ++  ML  G   PD
Sbjct: 139 SMLVR-FGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG-MRPD 196

Query: 111 NYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD 170
            YT+P V++ C  +   ++G  +H  VL  GF  +  V N L+ MY   G++ AARKVFD
Sbjct: 197 VYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKVFD 256

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
            M     +SWN +I+G+F+N   +  L +F  ML++ V+P+  ++ SV  A G L E+  
Sbjct: 257 GMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGF 316

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
            + +H          ++A  N+L+ MY   G + +A  +F RM  +D ++WT+MI+GY  
Sbjct: 317 AKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEK 376

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           NG    AL ++ LM+   V P+ +TI S L+AC+ L  L  G  LH     +     V+V
Sbjct: 377 NGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVV 436

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
             AL++MYAK   +  + +VF   ++K  V W++++AG   N  + +A+  FR ML   V
Sbjct: 437 ANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYMLGH-V 495

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           +PN  T  + L A A    L+    IH Y++R G  S   V   L+D+Y KCG    A  
Sbjct: 496 KPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWA 555

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
            FS     +KD+V W+++++G+  HG G+ A+SLF +MV+ G  P+EVTF + L ACS  
Sbjct: 556 QFSV--HSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRA 613

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           G++ +G +LF+ M E         HY C+VDLL R G+L EAY+LI  MP+KP  AVWGA
Sbjct: 614 GMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGA 673

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LL  C IH +VELGE+AAK + ELEP +   +VLL  LY+   +W     VR  M EKGL
Sbjct: 674 LLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGL 733

Query: 651 RKAPAHSLIEVRNILTA 667
            +    S +EV+ +  A
Sbjct: 734 EQDNGCSWVEVKGVTHA 750



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 160/520 (30%), Positives = 254/520 (48%), Gaps = 14/520 (2%)

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL---GIALHGRVLITGFDMDTF 147
           SH  L   L +L      PD   Y  + + C    WR+    G+    R           
Sbjct: 76  SHGQLAQALWLLESSPEPPDEGAYVALFRLCE---WRRAVDAGMRACARADAEHPSFGLR 132

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           +GN +++M + FGE+  A +VF  M E  V SWN ++ GY K  + +EAL ++  ML +G
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG 192

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           + PD  +   VL  CG + +  MGR +H  V     G  +   NALV MY KCG +  AR
Sbjct: 193 MRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAAR 252

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VFD M+  D ++W +MI G+  N +    L LF  M    V+PN +TI S+  A   L 
Sbjct: 253 KVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLS 312

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            +   + +H + +K+    +V    +LI MY     +  + ++F+R   K  + W A+++
Sbjct: 313 EVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMIS 372

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G   NG   KA+E++  M +  V P+D T+ S L A A L  L   + +H      GF+ 
Sbjct: 373 GYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIR 432

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            V V+  L+++Y+K   ++ A ++F    + +KD+V WS +IAG+  +     A+  F+ 
Sbjct: 433 YVVVANALLEMYAKSKHIDKAIEVFKF--MAEKDVVSWSSMIAGFCFNHRSFEALYYFRY 490

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M+   V+PN VTF +AL AC+  G L  G ++  ++L      S       ++DL  + G
Sbjct: 491 ML-GHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRC-GIGSEGYVPNALLDLYVKCG 548

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVA 607
           +   A+        K     W  +L   V HG   LG++A
Sbjct: 549 QTSYAWAQFSVHSEKDV-VSWNIMLSGFVAHG---LGDIA 584



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 58/284 (20%), Positives = 114/284 (40%), Gaps = 60/284 (21%)

Query: 7   HTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSN 62
           H  P +   +  L    AAT ++   K++HA+++  G     ++ ++L+  Y   G  S 
Sbjct: 494 HVKPNSVTFIAAL-SACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSY 552

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
               F   SE+    +N ++  +  +G    +L +F  M+ +GE+ PD  T+  ++ AC+
Sbjct: 553 AWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEH-PDEVTFVALLCACS 611

Query: 123 DLAWRKLGIALHGRVLITGFDMDT----FVGN-----CLIAMYMNFGEVKAARKVFDAMW 173
                + G+ + G  L   F M T     V N     C++ +    G++  A  + + M 
Sbjct: 612 -----RAGMVIQGWEL---FHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRM- 662

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
                                             ++PD A   ++L  C   + +E+G +
Sbjct: 663 ---------------------------------PIKPDAAVWGALLNGCRIHRHVELGEL 689

Query: 234 IHELVAGGRLGKNIAAWNALV-DMYVKCGSVNEARLVFDRMSER 276
             +++    L  N  A++ L+ D+Y   G   +   V   M E+
Sbjct: 690 AAKVIL--ELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREK 731


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/661 (34%), Positives = 356/661 (53%), Gaps = 9/661 (1%)

Query: 9    LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVR 64
            + +TT+L +  +   + +K++   + +H+ I   G      + +SL+  Y   G +   R
Sbjct: 383  MNRTTYLSV--LNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRAR 440

Query: 65   ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
             LF+ M +R    +N ++  YA+     +++K++  M   G   P   T+  ++ ACT+ 
Sbjct: 441  ELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEG-VKPGRVTFLHLLSACTNS 499

Query: 125  AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
            +    G  +H  +L +G   +  + N L+ MY   G +  A+ VF+      ++SWN++I
Sbjct: 500  SAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMI 559

Query: 185  SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
            +G+ ++   + A  +F  M K G+EPD  +  SVL  C   + +E+GR IH L+    L 
Sbjct: 560  AGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQ 619

Query: 245  KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
             ++   NAL++MY++CGS+ +A  VF  +  R+V++WT+MI G+A  G+ R A  LF  M
Sbjct: 620  LDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQM 679

Query: 305  QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
            Q +G +P   T  S+L AC S   L  G+ + A  +    E +  V  ALI  Y+K   +
Sbjct: 680  QNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSM 739

Query: 365  KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
              + +VF +   +  + WN ++AG   NGL   A++   QM  + V  N  +  S+L A 
Sbjct: 740  TDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNAC 799

Query: 425  AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
            +  + L++   +H  +++      V V   LI +Y+KCGSLE A ++F      +K++V 
Sbjct: 800  SSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNF--TEKNVVT 857

Query: 485  WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
            W+ +I  Y  HG    A+  F  M + G++P+  TFTS L AC+H GL+ EG  +F+ + 
Sbjct: 858  WNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLE 917

Query: 545  ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
              H      +HY C+V LLGRAGR  EA  LI  MP  P  AVW  LLGAC IHGNV L 
Sbjct: 918  SQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALA 977

Query: 605  EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
            E AA    +L   NP  YVLLS +Y+A  RW D   +R VM+ +G+RK P  S IEV NI
Sbjct: 978  EHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNI 1037

Query: 665  L 665
            +
Sbjct: 1038 I 1038



 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 177/601 (29%), Positives = 302/601 (50%), Gaps = 13/601 (2%)

Query: 5   SHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-----PLFTHLRSSLVRAYGH 59
           S   +P      I L+  +     +   K++H   +  G      + T L +  VR  G 
Sbjct: 276 SSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRC-GD 334

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           V+  +   +  ++R   +YN ++   AQ+G   ++ + +  M   G    +  TY  V+ 
Sbjct: 335 VAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVV-MNRTTYLSVLN 393

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           AC+       G  +H  +   G   D  +GN LI+MY   G++  AR++F+ M +  ++S
Sbjct: 394 ACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLIS 453

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WN +I+GY +     EA+ ++  M   GV+P   + + +L AC        G+MIHE + 
Sbjct: 454 WNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDIL 513

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
              +  N    NAL++MY +CGS+ EA+ VF+    RD+++W SMI G+A +G    A  
Sbjct: 514 RSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYK 573

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           LF  M+ EG+ P+ +T  S+L  C +   L+ GR +H   I+  L+ +V +  ALI+MY 
Sbjct: 574 LFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYI 633

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           +C  ++ +++VF     +  + W A++ G    G  RKA ELF QM  +  +P  +T +S
Sbjct: 634 RCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSS 693

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           +L A    A L +   +  +++  G+     V   LI  YSK GS+  A K+F ++P  +
Sbjct: 694 ILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMP--N 751

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
           +DI+ W+ +IAGY  +G G TA+    +M + GV  N+ +F S L+ACS    L+EG  +
Sbjct: 752 RDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRV 811

Query: 540 FNFMLENH-QTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
              +++   Q   R      ++ +  + G L+EA ++      K     W A++ A   H
Sbjct: 812 HAEIVKRKMQGDVRVG--AALISMYAKCGSLEEAQEVFDNFTEKNV-VTWNAMINAYAQH 868

Query: 599 G 599
           G
Sbjct: 869 G 869



 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 165/587 (28%), Positives = 299/587 (50%), Gaps = 9/587 (1%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSG--P--LFTHLRSSLVRAYGHVSNVRILFDEMSE 72
           + LVQ     +S+A  K++HA ++ +G  P    ++L  ++      VS+   +F +M  
Sbjct: 86  VDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPR 145

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           R    +N+++  YAQ G    + ++F  M   G + P   TY  ++ AC   A  + G  
Sbjct: 146 RDVISWNSLISCYAQQGFKKKAFQLFEEMQTAG-FIPSKITYISILTACCSPAELEYGKK 204

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H +++  G+  D  V N L+ MY    ++ +AR+VF  ++   VVS+NT++  Y + AY
Sbjct: 205 IHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAY 264

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            +E + +F  M   G+ PD  + +++L A      ++ G+ IH+L     L  +I    A
Sbjct: 265 VEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTA 324

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L  M+V+CG V  A+   +  ++RDVV + ++I   A +G    A   +  M+ +GV  N
Sbjct: 325 LATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMN 384

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
             T  S+L+ACS+   L  G  +H+   +     +V +  +LI MYA+C  +  + ++F 
Sbjct: 385 RTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFN 444

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
              K+  + WNAI+AG        +A++L++QM  E V+P   T   LL A    +    
Sbjct: 445 TMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSD 504

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              IH  ++R G  S   ++  L+++Y +CGS+  A  +F     + +DI+ W+ +IAG+
Sbjct: 505 GKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFE--GTRARDIISWNSMIAGH 562

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
             HG  E A  LF EM + G++P+++TF S L  C +   L+ G  +   ++E+      
Sbjct: 563 AQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLD- 621

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            +    ++++  R G L +AY++  ++  +   + W A++G     G
Sbjct: 622 VNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMS-WTAMIGGFADQG 667



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 192/387 (49%), Gaps = 4/387 (1%)

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
            E + A+ V ++  C   + +   + IH  +    +G +I   N L++MYVKC SV++A 
Sbjct: 78  TETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAH 137

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VF +M  RDV++W S+I+ YA  G  + A  LF+ MQ  G  P+ +T  S+L+AC S  
Sbjct: 138 QVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPA 197

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L+ G+ +H+  I+   + +  V+ +L++MY KC  +  + QVF+   ++  V +N +L 
Sbjct: 198 ELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLG 257

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
                    + + LF QM  E + P+  T  +LL A+   + L +   IH   +  G  S
Sbjct: 258 LYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNS 317

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            + V T L  ++ +CG +  A +        D+D+VV++ +IA    HGH E A   + +
Sbjct: 318 DIRVGTALATMFVRCGDVAGAKQALE--AFADRDVVVYNALIAALAQHGHYEEAFEQYYQ 375

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M   GV  N  T+ S L+ACS    L  G +L +  +      S       ++ +  R G
Sbjct: 376 MRSDGVVMNRTTYLSVLNACSTSKALGAG-ELIHSHISEVGHSSDVQIGNSLISMYARCG 434

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGA 594
            L  A +L  TMP K     W A++  
Sbjct: 435 DLPRARELFNTMP-KRDLISWNAIIAG 460


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/661 (34%), Positives = 352/661 (53%), Gaps = 9/661 (1%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVR 64
           L +TT+L I  +   + +K++   K +H+ I   G      + ++L+  Y   G +   R
Sbjct: 328 LNRTTYLSI--LNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKAR 385

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
            LF  M +R    +N ++  YA+     ++++++  M   G   P   T+  ++ AC + 
Sbjct: 386 ELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEG-VKPGRVTFLHLLSACANS 444

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
           +    G  +H  +L +G   +  + N L+ MY   G +  A+ VF+      V+SWN++I
Sbjct: 445 SAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMI 504

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           +G+ ++   + A  +F  M    +EPD  +  SVL  C   + +E+G+ IH  +    L 
Sbjct: 505 AGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQ 564

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            ++   NAL++MY++CGS+ +AR VF  +  RDV++WT+MI G A  G+   A+ LF  M
Sbjct: 565 LDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQM 624

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
           Q EG RP   T  S+L  C+S   L  G+ + A+ +    E +  V  ALI  Y+K   +
Sbjct: 625 QNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSM 684

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
             + +VF +   +  V WN I+AG   NGL + AVE   QM  + V PN  +  SLL A 
Sbjct: 685 TDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNAC 744

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           +  + L++   +H  +++      V V   LI +Y+KCGS   A ++F  I   +K++V 
Sbjct: 745 SSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNII--EKNVVT 802

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+ +I  Y  HG    A+  F  M + G++P+  TFTS L AC+H GL+ EG  +F+ M 
Sbjct: 803 WNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSME 862

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
             +      +HY C+V LLGRA R  EA  LI  MP  P  AVW  LLGAC IHGN+ L 
Sbjct: 863 SEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALA 922

Query: 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
           E AA    +L   NP  Y+LLS +Y+A  RW D   +R VM+ +G+RK P  S IEV NI
Sbjct: 923 EHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNI 982

Query: 665 L 665
           +
Sbjct: 983 I 983



 Score =  288 bits (736), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 177/589 (30%), Positives = 298/589 (50%), Gaps = 13/589 (2%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSG-----PLFTHLRSSLVRAYGHVSNVRILFDEMS 71
           I L+  +     +   K++H   +  G      + T L +  VR  G V + +  F   +
Sbjct: 233 INLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRC-GDVDSAKQAFKGTA 291

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
           +R   +YN ++   AQ+G + ++ + +  M   G    +  TY  ++ AC+     + G 
Sbjct: 292 DRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDG-VALNRTTYLSILNACSTSKALEAGK 350

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H  +   G   D  +GN LI+MY   G++  AR++F  M +  ++SWN +I+GY +  
Sbjct: 351 LIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARRE 410

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
              EA+ ++  M   GV+P   + + +L AC        G+MIHE +    +  N    N
Sbjct: 411 DRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLAN 470

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           AL++MY +CGS+ EA+ VF+    RDV++W SMI G+A +G    A  LFQ MQ E + P
Sbjct: 471 ALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEP 530

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +++T  S+LS C +   L+ G+ +H    +  L+ +V +  ALI+MY +C  ++ +  VF
Sbjct: 531 DNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVF 590

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
                +  + W A++ GC   G   KA+ELF QM  E   P  +T +S+L      A L 
Sbjct: 591 HSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLD 650

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           +   +  Y++  G+     V   LI  YSK GS+  A ++F ++P   +DIV W+ IIAG
Sbjct: 651 EGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMP--SRDIVSWNKIIAG 708

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH-QTC 550
           Y  +G G+TAV    +M +  V PN+ +F S L+ACS    L+EG  +   +++   Q  
Sbjct: 709 YAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGD 768

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            R      ++ +  + G   EA ++   + ++     W A++ A   HG
Sbjct: 769 VRVG--AALISMYAKCGSQGEAQEVFDNI-IEKNVVTWNAMINAYAQHG 814



 Score =  274 bits (701), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 175/621 (28%), Positives = 309/621 (49%), Gaps = 12/621 (1%)

Query: 5   SHHTLPKTTHLV--IKLVQQYAATKSIAGTKQLHAFIITS--GP--LFTHLRSSLVRAYG 58
           +H   P  T     + L+Q     + +   K++HA ++ +  GP    ++L  ++     
Sbjct: 17  THQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCR 76

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
            V +   +F EM  R    +N+++  YAQ G    + ++F  M   G + P+  TY  ++
Sbjct: 77  SVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAG-FIPNKITYISIL 135

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
            AC   A  + G  +H +++  G+  D  V N L++MY   G++  AR+VF  +    VV
Sbjct: 136 TACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVV 195

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           S+NT++  Y + AY KE L +F  M   G+ PD  + +++L A      ++ G+ IH+L 
Sbjct: 196 SYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLT 255

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               L  +I    ALV M V+CG V+ A+  F   ++RDVV + ++I   A +G    A 
Sbjct: 256 VEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAF 315

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
             +  M+ +GV  N  T  S+L+ACS+   L+ G+ +H+   +     +V +  ALI MY
Sbjct: 316 EQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMY 375

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
           A+C  +  + ++F    K+  + WNAI+AG        +A+ L++QM  E V+P   T  
Sbjct: 376 ARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFL 435

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
            LL A A  +       IH  ++R G  S   ++  L+++Y +CGSL  A  +F     +
Sbjct: 436 HLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFE--GTQ 493

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
            +D++ W+ +IAG+  HG  ETA  LF+EM    ++P+ +TF S L  C +   L+ G  
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553

Query: 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
           +   + E+       +    ++++  R G L +A ++  ++  +   + W A++G C   
Sbjct: 554 IHGRITESGLQLD-VNLGNALINMYIRCGSLQDARNVFHSLQHRDVMS-WTAMIGGCADQ 611

Query: 599 GNVELGEVAAKWLFELEPENP 619
           G  ++  +   W  + E   P
Sbjct: 612 GE-DMKAIELFWQMQNEGFRP 631


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 232/669 (34%), Positives = 363/669 (54%), Gaps = 15/669 (2%)

Query: 2   NGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG--PLFTHLRSSLVRAYGH 59
           N  SH      T LV+      A  +S+   K++H  ++ S   P    L++ ++  YG 
Sbjct: 152 NSNSHFEPSTYTSLVLAC----ANFRSLDYAKKIHDHVLKSNYQPSII-LQNHMINMYGK 206

Query: 60  ---VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
              + + R +FD M   +   + +++  Y+QNG ++D++ M++ M R G++ PD  T+  
Sbjct: 207 CGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQF-PDQLTFGS 265

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           VIKAC       LG  LH  V+ + F       N LI+MY NFG+++ A  VF  +    
Sbjct: 266 VIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKD 325

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGV-EPDCASVVSVLPACGYLKEIEMGRMIH 235
           ++SW T+I+GY +  Y  EAL +F  +L+ G  +P+     SV  AC  L E+E G+ +H
Sbjct: 326 LISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVH 385

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
            +     L +N+ A  +L DMY K G +  A++ F ++   D+V+W ++I  +A NGD  
Sbjct: 386 GMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDAN 445

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            A+  F+ M   G+ P+S+T  SLL  C S   L +GR +H++ +K   + E+ V  +L+
Sbjct: 446 EAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDKEITVCNSLL 505

Query: 356 DMYAKCNLVKLSFQVFARTSKKKT-VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
            MY KC+ +  +  VF   S+    V WNAIL+ C+      +   L+++M     +P+ 
Sbjct: 506 TMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDS 565

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
            T+ +LL   A L  L     +HCY I+ G +  V V  GLID+Y+KCGSL+ A  +F  
Sbjct: 566 ITITTLLGTCAELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARDVFDS 625

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
              ++ DIV WS +I GY   G G  A++LF+ M   GVQPNEVT+  AL ACSH GL++
Sbjct: 626 T--QNLDIVSWSSLIVGYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGALSACSHIGLVE 683

Query: 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           EG  L+  M   H      +H++CIVDLL RAG L EA   I+   L      W  LL A
Sbjct: 684 EGWRLYKSMETEHGIPPTREHFSCIVDLLARAGCLHEAETFIQKSGLDADITAWKTLLAA 743

Query: 595 CVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP 654
           C  H NV++ E  A  + +L+P N    V+L  ++++   W++   +R +M + G++K P
Sbjct: 744 CKTHNNVDIAERGAGNILKLDPSNSAAMVMLCNIHASAGNWEEVAKLRKLMKQMGVQKVP 803

Query: 655 AHSLIEVRN 663
             S IEV++
Sbjct: 804 GQSWIEVKD 812



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 127/425 (29%), Positives = 214/425 (50%), Gaps = 19/425 (4%)

Query: 181 NTLISGYFKNAYAKEALVVFDWMLK---SGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           N+ I    K  + KEAL  FD+ LK   S  EP  ++  S++ AC   + ++  + IH+ 
Sbjct: 127 NSYIIFLCKQHHYKEALEAFDFHLKNSNSHFEP--STYTSLVLACANFRSLDYAKKIHDH 184

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V       +I   N +++MY KCGS+ +AR VFD M   +VV+WTSMI+GY+ NG   +A
Sbjct: 185 VLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDA 244

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + ++  M   G  P+ LT GS++ AC     +  GR LHA  IK      +  + ALI M
Sbjct: 245 IIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGRQLHAHVIKSWFGHHLTSQNALISM 304

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE-VVEPNDAT 416
           Y     ++ +  VF R   K  + W  ++ G +  G   +A+ LFR +L +   +PN+  
Sbjct: 305 YTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLGYRVEALYLFRDLLRQGTYQPNEFI 364

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
             S+  A + L +L+    +H   +++G    V     L D+Y+K G L SA   F +  
Sbjct: 365 FGSVFSACSSLLELEYGKQVHGMCVKFGLRRNVFAGCSLCDMYAKFGFLPSAKMAFCQ-- 422

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           IK+ DIV W+ IIA +  +G    A+  F++M+  G+ P+ +T+ S L  C     L++G
Sbjct: 423 IKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQG 482

Query: 537 LDLFNFML-----ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
             + ++++     +    C+       ++ +  +   L +A ++ R +        W A+
Sbjct: 483 RQIHSYIVKIGFDKEITVCNS------LLTMYTKCSHLHDALNVFRDISRNANLVSWNAI 536

Query: 592 LGACV 596
           L AC+
Sbjct: 537 LSACL 541


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/640 (34%), Positives = 351/640 (54%), Gaps = 9/640 (1%)

Query: 33  KQLHAFIITSGP-LFTHLRSSLVRAYGHVSN---VRILFDEMSERSSFLYNTVMKMYAQN 88
           +QLHA +   G  L T++ ++LV  Y  + N      +F +M  +    +N+++   AQ 
Sbjct: 233 EQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQ 292

Query: 89  GASHDSLKMFLGMLRLGEY-NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           G S  +L++F  M R  +Y  PD  T   ++ AC        G  LH  V+  G   D  
Sbjct: 293 GFSDGALELFTKMKR--DYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMI 350

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           V   L+ +Y+N  ++K A ++F      +VV WN ++  + K     E+  +F  M   G
Sbjct: 351 VEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKG 410

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           + P+  +  S+L  C  +  +++G  IH  V       N+   + L+DMY K G ++ A 
Sbjct: 411 LIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAH 470

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           ++   ++E DVV+WT++I+GYA +     AL  F+ M   G++ +++   S +SAC+ + 
Sbjct: 471 VILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQ 530

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L +GR +HA +       ++ +  AL+ +YA+C  +K ++  F +   K ++ WN +++
Sbjct: 531 ALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLIS 590

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G   +G    A+++F QM    +E +  T  S + A A +A+++Q   IH  +I+ GF S
Sbjct: 591 GFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDS 650

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            +EVS  LI  Y+KCGS+E A + F E+P  +K+ V W+ +I GY  HG+G  AV+LF++
Sbjct: 651 DIEVSNALITFYAKCGSIEDARREFCEMP--EKNDVSWNAMITGYSQHGYGNEAVNLFEK 708

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M Q G  PN VTF   L ACSH GL+ +GL  F  M + H    +  HY C+VDL+ RAG
Sbjct: 709 MKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAG 768

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
            L  A   I  MP++P   +W  LL AC +H NVE+GE AA+ L ELEPE+   YVLLS 
Sbjct: 769 FLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSN 828

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           +Y+   +W   +  R +M  +G++K P  S IEV+N + A
Sbjct: 829 MYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHA 868



 Score =  241 bits (616), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 148/571 (25%), Positives = 278/571 (48%), Gaps = 9/571 (1%)

Query: 33  KQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+HA II  G    P+ ++    L    G + + R +FD +  + S  +  ++  ++QN
Sbjct: 132 EQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQN 191

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   +++ +F  M   G + P  Y +  V+  CT +    +G  LH  V   G  ++T+V
Sbjct: 192 GYEEEAIHLFCEMHTAGIF-PTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYV 250

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+ +Y       +A KVF  M     VS+N+LISG  +  ++  AL +F  M +  +
Sbjct: 251 CNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYL 310

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +PDC +V S+L AC     +  G  +H  V    +  ++    AL+D+YV C  +  A  
Sbjct: 311 KPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHE 370

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +F      +VV W  M+  +    ++  +  +F+ MQ +G+ PN  T  S+L  C+S+  
Sbjct: 371 MFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGA 430

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L  G  +H   IK   +  V V + LIDMYAK   +  +  +    ++   V W A+++G
Sbjct: 431 LDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISG 490

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
              + L  +A++ F++ML   ++ ++   +S + A A +  L Q   IH      G+   
Sbjct: 491 YAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSED 550

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           + +   L+ +Y++CG ++ A+  F +I  KD   + W+ +I+G+   G+ E A+ +F +M
Sbjct: 551 LSIGNALVSLYARCGRIKEAYLEFEKIDAKDS--ISWNGLISGFAQSGYCEDALKVFAQM 608

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
            ++ ++ +  TF SA+ A ++   + +G  +   +++     S  +    ++    + G 
Sbjct: 609 NRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFD-SDIEVSNALITFYAKCGS 667

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           +++A      MP K     W A++     HG
Sbjct: 668 IEDARREFCEMPEK-NDVSWNAMITGYSQHG 697



 Score =  233 bits (593), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 141/470 (30%), Positives = 246/470 (52%), Gaps = 11/470 (2%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           LHG++L  GF  ++ + N L+ +Y   G++    KVF+ M   SV SW+ +ISG+ +   
Sbjct: 32  LHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKM 91

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPAC-GYLKEIEMGRMIH-ELVAGGRLGKNIAAW 250
           +   L +F  M++  V P   S  SVL AC G+   I     IH  ++  G L   I + 
Sbjct: 92  SNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIIS- 150

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           N L+ +Y K G +  AR VFD +  +D V+W +MI+G++ NG    A+ LF  M   G+ 
Sbjct: 151 NPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIF 210

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           P      S+LS C+ +     G  LHA   K     E  V  AL+ +Y++      + +V
Sbjct: 211 PTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKV 270

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F++   K  V +N++++G    G +  A+ELF +M  + ++P+  T+ SLL A A    L
Sbjct: 271 FSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGAL 330

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
            +   +H Y+I+ G  S + V   L+D+Y  C  +++AH++F  +  + +++V+W+V++ 
Sbjct: 331 CKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMF--LTAQTENVVLWNVMLV 388

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
            +G   +   +  +F++M   G+ PN+ T+ S L  C+  G LD G  +   ++   +T 
Sbjct: 389 AFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVI---KTG 445

Query: 551 SRADHYTC--IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
            + + Y C  ++D+  + G+LD A+ ++RT+        W AL+     H
Sbjct: 446 FQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDV-VSWTALISGYAQH 494



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 193/437 (44%), Gaps = 36/437 (8%)

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           M   G+  +C + + +L  C     +   + +H  +     G      N LVD+Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           ++    VF+ M  R V +W  +I+G+         L LF  M  E V P  ++  S+L A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 323 CSSLYY-LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
           CS     ++    +HA  I   L C  I+   LI +YAK  L+  + +VF     K +V 
Sbjct: 121 CSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVS 180

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           W A+++G   NG   +A+ LF +M    + P     +S+L     +        +H  + 
Sbjct: 181 WVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVF 240

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           +YG      V   L+ +YS+  +  SA K+FS+  ++ KD V ++ +I+G    G  + A
Sbjct: 241 KYGSSLETYVCNALVTLYSRMPNFVSAEKVFSK--MQSKDEVSFNSLISGLAQQGFSDGA 298

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF---------------MLEN 546
           + LF +M +  ++P+ VT  S L AC+  G L +G  L ++               +L+ 
Sbjct: 299 LELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDL 358

Query: 547 HQTCS--RADH-------------YTCIVDLLGRAGRLDEAYDLIRTMPLK---PTHAVW 588
           +  CS  +  H             +  ++   G+   L E++ + R M +K   P    +
Sbjct: 359 YVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTY 418

Query: 589 GALLGACVIHGNVELGE 605
            ++L  C   G ++LGE
Sbjct: 419 PSILRTCTSVGALDLGE 435


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/599 (35%), Positives = 345/599 (57%), Gaps = 9/599 (1%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LFDEM++  +FL+N ++K +   G   ++++ +  M+  G    D +TYP VIK+   ++
Sbjct: 86  LFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAG-VKADTFTYPFVIKSVAGIS 144

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             + G  +H  V+  GF  D +V N LI++YM  G    A KVF+ M E  +VSWN++IS
Sbjct: 145 SLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMIS 204

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY        +L++F  MLK G +PD  S +S L AC ++   +MG+ IH      R+  
Sbjct: 205 GYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIET 264

Query: 246 -NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            ++    +++DMY K G V+ A  +F+ M +R++V W  MI  YA NG V +A   FQ M
Sbjct: 265 GDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKM 324

Query: 305 QFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
             + G++P+ +T  +LL A + L     GR++H + +++     +++ETALIDMY +C  
Sbjct: 325 SEQNGLQPDVITSINLLPASAIL----EGRTIHGYAMRRGFLPHMVLETALIDMYGECGQ 380

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           +K +  +F R ++K  + WN+I+A  V NG    A+ELF+++    + P+  T+ S+LPA
Sbjct: 381 LKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPA 440

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
           YA    L +   IH Y+++  + S   +   L+ +Y+ CG LE A K F+ I +KD  +V
Sbjct: 441 YAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKD--VV 498

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ II  Y +HG G  +V LF EM+ S V PN+ TF S L ACS  G++DEG + F  M
Sbjct: 499 SWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESM 558

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
              +      +HY C++DL+GR G    A   +  MP  PT  +WG+LL A   H ++ +
Sbjct: 559 KREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITI 618

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
            E AA+ +F++E +N G YVLL  +Y+   RW+D   ++ +M+ KG+ +  + S +E +
Sbjct: 619 AEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAK 677



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/466 (29%), Positives = 240/466 (51%), Gaps = 12/466 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAY---GHVSNVRILFDEMSERS 74
           +++  A   S+   K++HA +I  G +   ++ +SL+  Y   G   +   +F+EM ER 
Sbjct: 136 VIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERD 195

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
              +N+++  Y   G    SL +F  ML+ G + PD ++    + AC+ +   K+G  +H
Sbjct: 196 IVSWNSMISGYLALGDGFSSLMLFKEMLKCG-FKPDRFSTMSALGACSHVYSPKMGKEIH 254

Query: 135 GRVLITGFDM-DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
              + +  +  D  V   ++ MY  +GEV  A ++F+ M + ++V+WN +I  Y +N   
Sbjct: 255 CHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRV 314

Query: 194 KEALVVFDWML-KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            +A + F  M  ++G++PD  + +++LPA   L+    GR IH          ++    A
Sbjct: 315 TDAFLCFQKMSEQNGLQPDVITSINLLPASAILE----GRTIHGYAMRRGFLPHMVLETA 370

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+DMY +CG +  A ++FDRM+E++V++W S+I  Y  NG   +AL LFQ +    + P+
Sbjct: 371 LIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPD 430

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           S TI S+L A +    L  GR +HA+ +K       I+  +L+ MYA C  ++ + + F 
Sbjct: 431 STTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFN 490

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
               K  V WN+I+     +G  R +V LF +M+   V PN +T  SLL A +I   + +
Sbjct: 491 HILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDE 550

Query: 433 AMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
                  + R YG    +E    ++D+  + G+  +A +   E+P 
Sbjct: 551 GWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPF 596



 Score =  212 bits (539), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 137/450 (30%), Positives = 237/450 (52%), Gaps = 14/450 (3%)

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
           A ++FD M +     WN +I G+       EA+  +  M+ +GV+ D  +   V+ +   
Sbjct: 83  ALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAG 142

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           +  +E G+ IH +V       ++   N+L+ +Y+K G   +A  VF+ M ERD+V+W SM
Sbjct: 143 ISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSM 202

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           I+GY   GD  ++L LF+ M   G +P+  +  S L ACS +Y  K G+ +H   ++  +
Sbjct: 203 ISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRI 262

Query: 345 EC-EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
           E  +V+V T+++DMY+K   V  + ++F    ++  V WN ++     NG    A   F+
Sbjct: 263 ETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQ 322

Query: 404 QMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
           +M  +  ++P+  T  +LLPA AIL    +   IH Y +R GFL  + + T LID+Y +C
Sbjct: 323 KMSEQNGLQPDVITSINLLPASAIL----EGRTIHGYAMRRGFLPHMVLETALIDMYGEC 378

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G L+SA  IF  +   +K+++ W+ IIA Y  +G   +A+ LF+E+  S + P+  T  S
Sbjct: 379 GQLKSAEVIFDRMA--EKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIAS 436

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
            L A +    L EG ++  +++++ +  S       +V +    G L++A      + LK
Sbjct: 437 ILPAYAESLSLSEGREIHAYIVKS-RYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLK 495

Query: 583 PTHAVWGALLGACVIHGNVELGEVAAKWLF 612
                W +++ A  +HG    G ++  WLF
Sbjct: 496 DV-VSWNSIIMAYAVHG---FGRISV-WLF 520



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 170/346 (49%), Gaps = 24/346 (6%)

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           + +A  +FD M++ D   W  MI G+   G    A+  +  M F GV+ ++ T   ++ +
Sbjct: 80  MEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKS 139

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
            + +  L+ G+ +HA  IK     +V V  +LI +Y K      + +VF    ++  V W
Sbjct: 140 VAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSW 199

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           N++++G +  G    ++ LF++ML    +P+  +  S L A + +   +    IHC+ +R
Sbjct: 200 NSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVR 259

Query: 443 YGFLS-VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
               +  V V T ++D+YSK G +  A +IF+   +  ++IV W+V+I  Y  +G    A
Sbjct: 260 SRIETGDVMVMTSILDMYSKYGEVSYAERIFN--GMIQRNIVAWNVMIGCYARNGRVTDA 317

Query: 502 VSLFKEMV-QSGVQPNEVTFTSALHACS-------HGGLLDEGLDLFNFMLENHQTCSRA 553
              F++M  Q+G+QP+ +T  + L A +       HG  +  G  L + +LE        
Sbjct: 318 FLCFQKMSEQNGLQPDVITSINLLPASAILEGRTIHGYAMRRGF-LPHMVLE-------- 368

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
              T ++D+ G  G+L  A  +   M  K   + W +++ A V +G
Sbjct: 369 ---TALIDMYGECGQLKSAEVIFDRMAEKNVIS-WNSIIAAYVQNG 410



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 124/244 (50%), Gaps = 3/244 (1%)

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           +A   L++ + Q+F   +K     WN ++ G    GL  +AV+ + +M+   V+ +  T 
Sbjct: 74  FADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTY 133

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
             ++ + A ++ L++   IH  +I+ GF+S V V   LI +Y K G    A K+F E+P 
Sbjct: 134 PFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMP- 192

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            ++DIV W+ +I+GY   G G +++ LFKEM++ G +P+  +  SAL ACSH      G 
Sbjct: 193 -ERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGK 251

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
           ++    + +          T I+D+  + G +  A  +   M ++     W  ++G    
Sbjct: 252 EIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGM-IQRNIVAWNVMIGCYAR 310

Query: 598 HGNV 601
           +G V
Sbjct: 311 NGRV 314



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 138/285 (48%), Gaps = 8/285 (2%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPL-FTHLRSSLVRAYGHVSNVR---ILFDEMS 71
           VI  +    A+  + G + +H + +  G L    L ++L+  YG    ++   ++FD M+
Sbjct: 334 VITSINLLPASAILEG-RTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMA 392

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
           E++   +N+++  Y QNG ++ +L++F  +       PD+ T   ++ A  +      G 
Sbjct: 393 EKNVISWNSIIAAYVQNGKNYSALELFQELWD-SSLVPDSTTIASILPAYAESLSLSEGR 451

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H  ++ + +  +T + N L+ MY   G+++ ARK F+ +    VVSWN++I  Y  + 
Sbjct: 452 EIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHG 511

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAAW 250
           + + ++ +F  M+ S V P+ ++  S+L AC     ++ G      +     +   I  +
Sbjct: 512 FGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHY 571

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVV-TWTSMINGYALNGDV 294
             ++D+  + G+ + A+   + M        W S++N    + D+
Sbjct: 572 GCMLDLIGRTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDI 616


>gi|359480813|ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Vitis vinifera]
          Length = 634

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/650 (35%), Positives = 367/650 (56%), Gaps = 53/650 (8%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTH--LRSSLVRAY---GHVSNVRILFDEMSER 73
           L+Q  + +K++   KQLH  II  G L  H  + + LV+ Y   G + + + LFD++S+ 
Sbjct: 29  LLQLCSNSKALHQGKQLHQHIILCG-LDHHPFMLTKLVQMYADCGDLGSAQALFDKLSQP 87

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           + F +  ++  Y++NG S + ++ +  M +L    PD Y +P V +AC  L W ++GI +
Sbjct: 88  NVFAWTAILGFYSRNGLSDECVRTYSEM-KLKGVLPDKYVFPKVFRACGQLLWLEVGIQV 146

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H  V+I G + D  V N LI MY   G+V + R+VFD M E  V+SWN++ISGY  N + 
Sbjct: 147 HKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGYVCNGFL 206

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
           + ++ +   M   G EPD                                   +  WN +
Sbjct: 207 EFSVELLASMRIRGFEPD-----------------------------------MVTWNTV 231

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR-PN 312
           +D Y + G  +EA  +F+++ E ++++ T++++GY+  G+   +LG+F+ M    V  P+
Sbjct: 232 MDAYCRMGLCDEAWEIFEQIKEPNIISLTTLVSGYSRIGNHEKSLGIFREMMSRRVAFPD 291

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET---ALIDMYAKCNLVKLSFQ 369
             ++ S+L +C  L  L  G+ +H + I+ +++     ++   AL+ MY KC  ++ +  
Sbjct: 292 LDSLSSVLVSCRHLGALVCGQEIHGYGIR-SVDSSSFYKSAGAALLTMYVKCKRIQDALN 350

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           VF    +   V WNA++ G V   +   A+E F +M    +  N  T++++LPA     D
Sbjct: 351 VFELMDRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQITISTVLPA----CD 406

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L+    +H Y+ +  F SV+ V   LI +YSKCG + +A+ IFS +    +D+V W+ +I
Sbjct: 407 LKSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMI--SRDLVSWNTMI 464

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
            G+GMHG G+ A+ L ++M  S V PN VTFTSAL ACSH GL+DEG++LF+ M  +   
Sbjct: 465 GGFGMHGLGQFALQLLRDMSHSDVCPNSVTFTSALSACSHSGLVDEGMELFHTMTRDFGF 524

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
               +H++C+VDLL RA RL++A   I  MPLKP+  +W ALL AC    NV + ++AA+
Sbjct: 525 TPGMEHFSCVVDLLARADRLEDAVGFIEKMPLKPSKHIWSALLAACRAQQNVSVAKLAAE 584

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
            LF+LEPE+ GNYV LS +Y+   RW DA  VR +M+++GL K   +S I
Sbjct: 585 QLFQLEPEHAGNYVTLSNIYARAGRWDDAVAVRKLMEDRGLVKPSGYSWI 634



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 161/344 (46%), Gaps = 16/344 (4%)

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +S  +  LL  CS+   L +G+ LH   I   L+    + T L+ MYA C  +  +  +F
Sbjct: 22  SSFQLNHLLQLCSNSKALHQGKQLHQHIILCGLDHHPFMLTKLVQMYADCGDLGSAQALF 81

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
            + S+     W AIL     NGL+ + V  + +M ++ V P+      +  A   L  L+
Sbjct: 82  DKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACGQLLWLE 141

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
             + +H  ++  G    ++V   LID+YSK G + S  ++F E+   ++D++ W+ +I+G
Sbjct: 142 VGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMV--ERDVLSWNSMISG 199

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           Y  +G  E +V L   M   G +P+ VT+ + + A    GL DE  ++F  + E +    
Sbjct: 200 YVCNGFLEFSVELLASMRIRGFEPDMVTWNTVMDAYCRMGLCDEAWEIFEQIKEPNII-- 257

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLK----PTHAVWGALLGACVIHGNVELG-EV 606
                T +V    R G  +++  + R M  +    P      ++L +C   G +  G E+
Sbjct: 258 ---SLTTLVSGYSRIGNHEKSLGIFREMMSRRVAFPDLDSLSSVLVSCRHLGALVCGQEI 314

Query: 607 AAKWLFELEPEN---PGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
               +  ++  +        LL+ +Y   +R +DA NV ++MD 
Sbjct: 315 HGYGIRSVDSSSFYKSAGAALLT-MYVKCKRIQDALNVFELMDR 357


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/670 (35%), Positives = 370/670 (55%), Gaps = 38/670 (5%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVS---NVRILFD 68
           T  LV  L++   + KS +  +QLHA ++          S L+  Y H++   +   LF+
Sbjct: 7   TEALVNSLLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRLFN 66

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
            +    +  + +V++ Y  +G  H SL  F+GML  G Y PD+  +P V+KAC  L    
Sbjct: 67  TLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLY-PDHNVFPSVLKACAMLMDLN 125

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK-------AARKVFDAMWEH--SVVS 179
           LG +LHG ++  G D D + GN L+ MY     +K        A +V D M E   SV +
Sbjct: 126 LGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRT 185

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSV--LPACGYLKEIEMGRMIHEL 237
            + L+    +     EA   F++ +        A V+ +   P   Y +E+E   +    
Sbjct: 186 ASVLVGNQGRKVSDIEA---FNYDVSCRSREFEAQVLEIDYKPRSEY-REMEACNL---- 237

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
              G+  K+I+             SV+  R +F+ M E+D+V+W ++I G A NG     
Sbjct: 238 ---GQQIKDIS----------HSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGET 284

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L + + M    ++P+S T+ S+L   +    + +G+ +H  +I+Q L+ EV V ++LIDM
Sbjct: 285 LTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDM 344

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAKC  V  S++VF   +++  + WN+I+AGCV NGL  + ++ FRQML+  ++P   + 
Sbjct: 345 YAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSF 404

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +S++PA A L  L     +H Y+ R GF   + +++ L+D+Y+KCG++ +A +IF  + +
Sbjct: 405 SSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRL 464

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
           +D  +V W+ +I G  +HGH   A+ LF++M   G++PN V F + L ACSH GL+DE  
Sbjct: 465 RD--MVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAW 522

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             FN M  +       +HY  + DLLGRAGRL+EAYD I  MP+ PT +VW  LL AC +
Sbjct: 523 KYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRV 582

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           H NV++ E  A  + E++P+N G Y+LL+ +YSA RRWK+A   R  +   G+RK PA S
Sbjct: 583 HKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACS 642

Query: 658 LIEVRNILTA 667
            IEVRN + A
Sbjct: 643 WIEVRNKVYA 652


>gi|357436395|ref|XP_003588473.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477521|gb|AES58724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 827

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 242/769 (31%), Positives = 392/769 (50%), Gaps = 120/769 (15%)

Query: 7   HTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH--LRSSLVRAYGHVSNVR 64
           HT P T+     ++Q   ++ S+   KQLH+  I +G  + H  +++ L++ Y   S+  
Sbjct: 28  HTPPLTSTTYSTILQ---SSNSLTLGKQLHSHSIKTG-FYNHNFVQTKLLQMYSINSSFE 83

Query: 65  I---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGML--RLGEYNPDNYTYPIVIK 119
               +FD+M+ ++   +  V++++   G  +    +F   L   LGE   D + +P+V+ 
Sbjct: 84  DAWHMFDKMTLKNLHSWTAVLRLHLNMGLFYKGFMLFEEFLCDGLGE-KLDFFVFPVVLN 142

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
            C  L   +LG  +HG VL  GF  + +VGN LI MY   G +  A+KV + M +   VS
Sbjct: 143 ICCGLGDLELGRQVHGMVLKHGFVTNVYVGNALIDMYGKCGSLDEAKKVLEGMTQKDCVS 202

Query: 180 WNTLIS-----------------------------------GYFKNAYAKEALVVFDWML 204
           WN++I+                                   G+  NAY  E++ +F  M+
Sbjct: 203 WNSIITACVANGVVYEALDLLENMLLSELEPNVVTWSAVIGGFSSNAYDVESVELFARMV 262

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
            +GV PD  ++ SVLPAC  +K + +G+ +H  +    L  N    NALV MY +CG + 
Sbjct: 263 GAGVAPDARTLASVLPACSRMKWLFVGKELHGYIVRHELFSNGFVANALVGMYRRCGDMK 322

Query: 265 EARLVFDRMS-----------------------------------ERDVVTWTSMINGYA 289
            A  +F + +                                   ERD ++W  MI+G+ 
Sbjct: 323 SAFKIFSKFARKCAASYNTMIVGYLENGNVGKAKELFYQMEQEGVERDRISWNCMISGHV 382

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            N    +AL LF+ +  EG+ P+S T+GS+L+  + +  +++G+ +H+  I + L+    
Sbjct: 383 DNFMFDDALMLFRDLLMEGIEPDSFTLGSILTGFADMTCIRQGKEIHSIAIVKGLQSNSF 442

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA------------------------- 384
           V  AL++MY KCN +  +   F   S++ T  WNA                         
Sbjct: 443 VGGALVEMYCKCNDIIAAQMAFDEISERDTSTWNALISGYARCNQIGKIRELVERMKSDG 502

Query: 385 ----------ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
                     ILAG V N     A++LF +M V  + P+  T+  +L A + LA + +  
Sbjct: 503 FEPNVYTWNSILAGLVENKQYDLAMQLFNEMQVSSLRPDIYTVGIILAACSKLATIHRGK 562

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            +H Y IR G+ S   +   L+D+Y+KCGS++  ++++++I   + ++V  + ++  Y M
Sbjct: 563 QVHAYSIRAGYDSDAHIGATLVDMYAKCGSIKHCYQVYNKI--SNPNLVCHNAMLTAYAM 620

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           HGHGE  + +F+ M+ S V+P+ VTF S L +C H G +  G + F +++E +       
Sbjct: 621 HGHGEEGIVIFRRMLDSRVRPDHVTFLSVLSSCVHAGSIKIGYECF-YLMETYNITPTLK 679

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HYTC+VDLL RAG+LDEAY LI+ MP++     W ALLG C IH  V LGE+AA+ L EL
Sbjct: 680 HYTCMVDLLSRAGKLDEAYQLIKNMPMEADSVTWSALLGGCFIHKEVALGEIAAEKLIEL 739

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           EP N GNYVLL+ LY++  RW D    R++M++KG++K+P  S IE R+
Sbjct: 740 EPSNTGNYVLLANLYASAGRWHDLAKTRELMNDKGMQKSPGCSWIEDRD 788


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/656 (35%), Positives = 372/656 (56%), Gaps = 16/656 (2%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGP-----LFTHLRSSLVRA--YGHVSNVRILFD 68
           +I L++    +KS+   K LH  ++T G      +  +L S  V    + +  NV  + +
Sbjct: 6   LIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFDVIE 65

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
              E S  L N +M  Y +N    ++L +F  ++      PD+YTYP V+KAC  L    
Sbjct: 66  NPFEIS--LCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRVV 123

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
           LG  +H  ++  G  +D  VG+ L+ MY    E + A K+FD M +  V  WNT+IS Y+
Sbjct: 124 LGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISCYY 183

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELV-AGGRLGKN 246
           ++   +EAL  F  M + G EPD  ++ + + +C  L +++ GR IH ELV +G R+   
Sbjct: 184 QSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSF 243

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           ++A  ALVDMY KCG +  A  VF++M  + VV W SMINGY   GD  + + LF+ M  
Sbjct: 244 VSA--ALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYS 301

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
           EGV+P   T+ S L ACS    L  G+ +H + I+  ++ ++ + ++L+D+Y KC  V+ 
Sbjct: 302 EGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVES 361

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           +  +F    K  TV WN +++G V  G    A+ LF +M    VEP+  T  S+L A + 
Sbjct: 362 AETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQ 421

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           LA L++   IH  ++     +   V   L+D+Y+KCG++E A  +F  +P  ++D+V W+
Sbjct: 422 LAALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLP--ERDLVSWT 479

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            +I  YG HG    A+ LF EM+QS V+P+ VTF + L ACSH GL+D+GL  FN M+  
Sbjct: 480 SMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINV 539

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP-LKPTHAVWGALLGACVIHGNVELGE 605
           +    R +HY+C++ LLGRAGRL EAY+++++ P +     +   L  AC +H N++LG 
Sbjct: 540 YGIIPRIEHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGV 599

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
             A+ L + +P++   Y++LS +Y++  +W +   VR  M + GL+K P  S IE+
Sbjct: 600 EIAENLIDKDPDDSSTYIILSNMYASFGKWDEVRMVRSKMKDLGLKKNPGCSWIEI 655



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 203/395 (51%), Gaps = 10/395 (2%)

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D   ++ +L A    K ++ G+++H+ V    L  ++     L+ +YV C   + A+ VF
Sbjct: 2   DARKLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVF 61

Query: 271 DRMSER-DVVTWTSMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYY 328
           D +    ++     ++ GY  N     ALGLF +LM +  ++P+S T  S+L AC  L  
Sbjct: 62  DVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRR 121

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           +  G+ +H   +K+ L  +++V ++L+ MYAKCN  + + ++F     K    WN +++ 
Sbjct: 122 VVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISC 181

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
              +G   +A+  F  M     EP+  T+ + + + A L DL +   IH  L+  GF   
Sbjct: 182 YYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMD 241

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             VS  L+D+Y KCG LE A ++F ++P  +K +V W+ +I GYG  G G + + LFK M
Sbjct: 242 SFVSAALVDMYGKCGQLEMAIEVFEQMP--NKTVVAWNSMINGYGFKGDGISCIQLFKRM 299

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRA 566
              GV+P   T TS L ACS    L EG  +  +++ N     + D +  + ++DL  + 
Sbjct: 300 YSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNR---IQPDIFLNSSLMDLYFKC 356

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
           G+++ A  + + MP K T   W  ++   V  G +
Sbjct: 357 GKVESAETIFKLMP-KTTTVSWNVMISGYVTEGKL 390


>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 243/719 (33%), Positives = 378/719 (52%), Gaps = 79/719 (10%)

Query: 18   KLVQQYAATKSIAGTKQLHAFIITSGPLFT---HLRSSLVRAYGHVSNVRI---LFDEMS 71
            +L+Q     +++   +Q+HA I+ +G  F    ++ + LV  Y       +   LF  + 
Sbjct: 1179 ELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLR 1238

Query: 72   ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
             R+ F +  ++ +  + G S D+L  F+ M   G + PDN+  P V+KAC  L    LG 
Sbjct: 1239 VRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVF-PDNFVLPNVLKACGSLQLIGLGK 1297

Query: 132  ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
             +HG VL  GF    FV + L+ MY   G ++ ARKVFD+M E +VV+WN++I GY +N 
Sbjct: 1298 GVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNG 1357

Query: 192  YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
              +EA+ VF  M   G+EP   +V S L A   L  +  G+  H +     L  +    +
Sbjct: 1358 LNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILGS 1417

Query: 252  ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            ++++ Y K G + +A LVF RM E+DVVTW  +I+ Y  +  V  AL +  LM+ E +R 
Sbjct: 1418 SIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLRF 1477

Query: 312  NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM-------------- 357
            +S+T+ S+LSA +    +K G+  H + I++NLE +V+V  ++IDM              
Sbjct: 1478 DSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVF 1537

Query: 358  -----------------YAKCNL----VKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR 396
                             YA+  L    +KL +Q+   +     + WN+++ G + NG   
Sbjct: 1538 DSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNGQVN 1597

Query: 397  KAVELFRQMLVEVVEPNDATLNSLLPAYA----------ILADLQQA------------- 433
            +A ++F QM     +PN  T  +L+   A              +Q+A             
Sbjct: 1598 EAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITSVL 1657

Query: 434  ------------MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
                          IH ++ R+ F   V V+T L+D+Y+KCGS++ A K+F  +    K+
Sbjct: 1658 LACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMM--SSKE 1715

Query: 482  IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
            + +++ +I+ Y +HG    A++LFK + + G++P+ +TFTS L ACSH GL++EGL+LF 
Sbjct: 1716 LPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFA 1775

Query: 542  FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
             M+  H      +HY C+V LL R G LDEA  LI TMP +P   + G+LL AC  H  +
Sbjct: 1776 DMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEI 1835

Query: 602  ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
            ELGE  +K LF+LEP N GNYV LS  Y+A  RW +  N+RD+M  +GLRK P  S I+
Sbjct: 1836 ELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQ 1894



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 154/324 (47%), Gaps = 28/324 (8%)

Query: 291  NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN--LECEV 348
            +G ++ ++ L   M+FE  +      G LL  C     L  G+ +HA  +K         
Sbjct: 1152 DGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARILKNGDFFAKNE 1211

Query: 349  IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
             VET L+  YAKC+  +++ ++F R   +    W AI+      G +  A+  F +M   
Sbjct: 1212 YVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSEDALLGFIEMQEN 1271

Query: 409  VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
             V P++  L ++L A   L  +     +H Y+++ GF + V VS+ L+D+Y KCG LE A
Sbjct: 1272 GVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDA 1331

Query: 469  HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
             K+F    + +K++V W+ +I GY  +G  + A+ +F +M   G++P  VT  S L A +
Sbjct: 1332 RKVFDS--MVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVTVASFLSASA 1389

Query: 529  HGGLLDEG-----------LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIR 577
            +   L EG           LDL N +             + I++   + G +++A +L+ 
Sbjct: 1390 NLDALIEGKQGHAIAILNSLDLDNIL------------GSSIINFYSKVGLIEDA-ELVF 1436

Query: 578  TMPLKPTHAVWGALLGACVIHGNV 601
            +  L+     W  L+ + V H  V
Sbjct: 1437 SRMLEKDVVTWNLLISSYVQHHQV 1460


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/535 (40%), Positives = 316/535 (59%), Gaps = 3/535 (0%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           ++ ++L+TG     F+   L+    N GEV  ARK+FD   +  V  WN ++  Y ++ +
Sbjct: 94  IYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGF 153

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
              A+ ++  M  + V PD  S   VL AC  L  +EMGR +H  +       ++   N 
Sbjct: 154 FGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNG 213

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           LV +Y KCG +  A  VF R+ +R +V+WTS+I+GYA NG    AL +F  M+   VRP+
Sbjct: 214 LVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPD 273

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            + + S+L A + +  L+ G+S+H   IK  LECE  +  +L  +YAKC  V ++   F 
Sbjct: 274 WIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFN 333

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           +      + WNA+++G V NG A +A+ELFR M  + + P+  T+ S + A A +  L+ 
Sbjct: 334 QVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLEL 393

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
           A  +  Y+    F + V V+T LID Y+KCGS++ A  +F  IP  DKD+VVWS ++ GY
Sbjct: 394 ARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIP--DKDVVVWSAMMVGY 451

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
           G+HG G  ++ LF  M Q+GV PN+VTF   L AC + GL++EG DLF+ M  ++    R
Sbjct: 452 GLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRM-RDYGIEPR 510

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
             HY C+VDLLGRAG LD AY+ +  MP++P  +VWGALL AC IH +V LGE AA+ LF
Sbjct: 511 HQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLF 570

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
            L+P N G+YV LS LY++   W     VR +M EKGL K   +S+IE+   L A
Sbjct: 571 SLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQA 625



 Score =  258 bits (660), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 143/440 (32%), Positives = 244/440 (55%), Gaps = 2/440 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G VS  R LFD+  +   FL+N +++ Y+++G    +++M+  M ++   +PD +++P V
Sbjct: 121 GEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARM-QVACVSPDGFSFPCV 179

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +KAC+ L   ++G  +HG++   GF+ D FV N L+A+Y   GE+  A  VF  + + ++
Sbjct: 180 LKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTI 239

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSW ++ISGY +N    EAL +F  M K+ V PD  ++VSVL A   ++++E G+ IH  
Sbjct: 240 VSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGC 299

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V    L        +L  +Y KCG V  ARL F+++    ++ W +MI+GY  NG    A
Sbjct: 300 VIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEA 359

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + LF+LM+ + +RP+S+T+ S ++AC+ +  L+  R +  +        +VIV T+LID 
Sbjct: 360 IELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDT 419

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAKC  V ++  VF R   K  V W+A++ G   +G  R+++ LF  M    V PND T 
Sbjct: 420 YAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTF 479

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
             LL A      +++  ++   +  YG     +    ++D+  + G L+ A+     +PI
Sbjct: 480 VGLLTACKNSGLVEEGWDLFHRMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPI 539

Query: 478 KDKDIVVWSVIIAGYGMHGH 497
            +  + VW  +++   +H H
Sbjct: 540 -EPGVSVWGALLSACKIHRH 558



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 105/358 (29%), Positives = 182/358 (50%), Gaps = 12/358 (3%)

Query: 43  GPLFTH-------LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASH 92
           G +F H       +++ LV  Y   G +     +F  + +R+   + +++  YAQNG   
Sbjct: 197 GQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPI 256

Query: 93  DSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCL 152
           ++L++F  M R     PD      V++A TD+   + G ++HG V+  G + +  +   L
Sbjct: 257 EALRIFSEM-RKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISL 315

Query: 153 IAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDC 212
            ++Y   G V  AR  F+ +   S++ WN +ISGY KN YA+EA+ +F  M    + PD 
Sbjct: 316 TSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDS 375

Query: 213 ASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR 272
            +V S + AC  +  +E+ R + E ++      ++    +L+D Y KCGSV+ AR VFDR
Sbjct: 376 ITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDR 435

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
           + ++DVV W++M+ GY L+G  R ++ LF  M+  GV PN +T   LL+AC +   ++ G
Sbjct: 436 IPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEG 495

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP-WNAILAGC 389
             L        +E        ++D+  +   +  ++        +  V  W A+L+ C
Sbjct: 496 WDLFHRMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSAC 553


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/535 (40%), Positives = 327/535 (61%), Gaps = 3/535 (0%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H +++++G     F+    +    N GE+  ARKVFD   E SV  WN +I GY  + +
Sbjct: 90  IHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNF 149

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
             +A+ ++  M  SGV PD  ++  VL AC  +  +E+G+ +H  +       ++   N 
Sbjct: 150 FGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNG 209

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           LV +Y KCG V +AR+VF+ + +R++V+WTSMI+GY  NG    AL +F  M+   V+P+
Sbjct: 210 LVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPD 269

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            + + S+L A + +  L++G+S+H   +K  LE E  +  +L  MYAKC  V ++   F 
Sbjct: 270 WIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFD 329

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           +      + WNA+++G   NG   +AV LF++M+ + +  +  T+ S + A A +  L  
Sbjct: 330 QMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDL 389

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
           A  +  Y+ +  + + V V+T LID+++KCGS++ A ++F      DKD+VVWS +I GY
Sbjct: 390 AKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDR--TLDKDVVVWSAMIVGY 447

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
           G+HG G+ A+ LF  M Q+GV PN+VTF   L AC+H GL++EG +LF+ M + +   +R
Sbjct: 448 GLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSM-KYYGIEAR 506

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
             HY C+VDLLGR+G L+EAYD I TMP++P  +VWGALLGAC I+ +V LGE AA+ LF
Sbjct: 507 HQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLF 566

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
            L+P N G+YV LS LY++ R W     VR +M EKGL K   +SLIE+   L A
Sbjct: 567 SLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQA 621



 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 158/468 (33%), Positives = 256/468 (54%), Gaps = 6/468 (1%)

Query: 34  QLHAFIITSGPLFT-HLRSSLVRA---YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           Q+HA ++ SG + +  L +  V A    G +   R +FDE  E S FL+N +++ Y+ + 
Sbjct: 89  QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHN 148

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              D+++M+  M   G  NPD +T P V+KAC+ +   ++G  +HG++   GF+ D FV 
Sbjct: 149 FFGDAIEMYSRMQASG-VNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQ 207

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N L+A+Y   G V+ AR VF+ + + ++VSW ++ISGY +N    EAL +F  M +  V+
Sbjct: 208 NGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVK 267

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PD  ++VSVL A   ++++E G+ IH  V    L        +L  MY KCG V  AR  
Sbjct: 268 PDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSF 327

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           FD+M   +V+ W +MI+GYA NG    A+GLFQ M  + +R +S+T+ S + AC+ +  L
Sbjct: 328 FDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSL 387

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
              + +  +  K     +V V TALIDM+AKC  V L+ +VF RT  K  V W+A++ G 
Sbjct: 388 DLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGY 447

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
             +G  + A++LF  M    V PND T   LL A      +++   +   +  YG  +  
Sbjct: 448 GLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKYYGIEARH 507

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
           +    ++D+  + G L  A+   + +PI +  + VW  ++    ++ H
Sbjct: 508 QHYACVVDLLGRSGHLNEAYDFITTMPI-EPGVSVWGALLGACKIYRH 554


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/664 (34%), Positives = 371/664 (55%), Gaps = 14/664 (2%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GH 59
           P  HTLP        +V+  AA  ++   + +H      G     ++ S+L++ Y   G 
Sbjct: 145 PDGHTLPY-------VVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGL 197

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           +   R +FD M ER   L+N +M  Y + G    ++ +F  ++R    +P+  T    + 
Sbjct: 198 LDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFR-VMRASGCDPNFATLACFLS 256

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
            C   A    G+ LH   +  G + +  V N L++MY     ++ A ++F  M    +V+
Sbjct: 257 VCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVT 316

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WN +ISG  +N    +AL +F  M KSG++PD  ++ S+LPA   L   + G+ IH  + 
Sbjct: 317 WNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIV 376

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
                 ++   +ALVD+Y KC  V  A+ VFD     DVV  ++MI+GY LN     A+ 
Sbjct: 377 RNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVK 436

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           +F+ +   G++PN++ + S L AC+S+  ++ G+ LH + +K   E    VE+AL+DMY+
Sbjct: 437 MFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYS 496

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           KC  + LS  +F++ S K  V WN++++    NG   +A++LFRQM++E V+ N+ T++S
Sbjct: 497 KCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISS 556

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           +L A A L  +     IH  +I+    + +   + LID+Y KCG+LE A ++F  +P  +
Sbjct: 557 ILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMP--E 614

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
           K+ V W+ II+ YG HG  + +V L   M + G + + VTF + + AC+H G + EGL L
Sbjct: 615 KNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRL 674

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           F  M E +    + +H +C+VDL  RAG+LD+A   I  MP KP   +WGALL AC +H 
Sbjct: 675 FRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHR 734

Query: 600 NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           NVEL E+A++ LF+L+P N G YVL+S + +   RW     +R +M +K ++K P +S +
Sbjct: 735 NVELAEIASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRRLMKDKKVQKIPGYSWV 794

Query: 660 EVRN 663
           +V N
Sbjct: 795 DVNN 798



 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 153/505 (30%), Positives = 255/505 (50%), Gaps = 14/505 (2%)

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNC-----LIAMYMNFGEV 162
           +P  Y    +++ C   +   LG+ +H R + +G       G       L+ MY+     
Sbjct: 33  SPCAYRLLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRF 92

Query: 163 KAARKVFDAMWEHSV---VSWNTLISGYFKNAYAKEALVVF--DWMLKSGVEPDCASVVS 217
           + A  VF ++   +    + WN LI G+    + + A++ +   W   S   PD  ++  
Sbjct: 93  RDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPY 152

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           V+ +C  L  + +GR++H       L +++   +AL+ MY   G ++ AR VFD M ERD
Sbjct: 153 VVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERD 212

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
            V W  M++GY   GDV +A+GLF++M+  G  PN  T+   LS C++   L  G  LH 
Sbjct: 213 CVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHT 272

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
             +K  LE EV V   L+ MYAKC  ++ ++++F    +   V WN +++GCV NGL   
Sbjct: 273 LAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDD 332

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
           A+ LF  M    ++P+  TL SLLPA   L   +Q   IH Y++R      V + + L+D
Sbjct: 333 ALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVD 392

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
           IY KC  +  A  +F     K  D+V+ S +I+GY ++   E AV +F+ ++  G++PN 
Sbjct: 393 IYFKCRDVRMAQNVFDA--TKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNA 450

Query: 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIR 577
           V   S L AC+    +  G +L  ++L+N     R    + ++D+  + GRLD ++ +  
Sbjct: 451 VMVASTLPACASMAAMRIGQELHGYVLKNAYE-GRCYVESALMDMYSKCGRLDLSHYMFS 509

Query: 578 TMPLKPTHAVWGALLGACVIHGNVE 602
            M  K     W +++ +   +G  E
Sbjct: 510 KMSAK-DEVTWNSMISSFAQNGEPE 533


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/535 (39%), Positives = 322/535 (60%), Gaps = 5/535 (0%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H R+L+ G     F+   LI    ++G++  AR+VFD +    V  WN +I GY +N +
Sbjct: 40  IHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNH 99

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            ++AL+++  M  + V PD  +   +L ACG L  ++MGR +H  V       ++   N 
Sbjct: 100 FQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNG 159

Query: 253 LVDMYVKCGSVNEARLVFD--RMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           L+ +Y KC  +  AR VF+   + ER +V+WT++++ YA NG+   AL +F  M+   V+
Sbjct: 160 LIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVK 219

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           P+ + + S+L+A + L  L++GRS+HA  +K  LE E  +  +L  MYAKC  V  +  +
Sbjct: 220 PDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKIL 279

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F +      + WNA+++G   NG A+ A++LF +M+ + V P+  ++ S + A A +  L
Sbjct: 280 FDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSL 339

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
           +QA  +  Y+ R  +   V +S+ LID+++KCGS+E A  +F      D+D+VVWS +I 
Sbjct: 340 EQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDR--TLDRDVVVWSAMIV 397

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           GYG+HG    A+SL++ M + GV PN+VTF   L AC+H G++ EG   FN M  +H+  
Sbjct: 398 GYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRM-ADHKIN 456

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
            +  HY CI+DLLGRAG LD+AY++I+ MP++P   VWGALL AC  H +VELG+ AA+ 
Sbjct: 457 PQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQ 516

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           LF ++P N G+YV LS LY+A R W     VR  M EKGL K    S +EVR  L
Sbjct: 517 LFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRL 571



 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 155/476 (32%), Positives = 266/476 (55%), Gaps = 8/476 (1%)

Query: 30  AGTKQLHAFIITSGPLFT-HLRSSLVRA---YGHVSNVRILFDEMSERSSFLYNTVMKMY 85
           A  +Q+HA ++  G  F+  L + L+ A   YG ++  R +FD++     F +N +++ Y
Sbjct: 35  AQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGY 94

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
           ++N    D+L M+  M +L   +PD++T+P ++KAC  L+  ++G  +H +V   GF+ D
Sbjct: 95  SRNNHFQDALLMYSKM-QLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEAD 153

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDA--MWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
            FV N LIA+Y     +  AR VF+   + E ++VSW  ++S Y +N    EAL +F  M
Sbjct: 154 VFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQM 213

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
            K  V+PDC ++VSVL A   L+++E GR IH  V    L        +L  MY KCG V
Sbjct: 214 RKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQV 273

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
             A+++FD+M   +++ W +MI+GYA NG  ++A+ LF  M  + VRP++++I S +SAC
Sbjct: 274 ATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISAC 333

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
           + +  L++ R +  +  + +   +V + +ALIDM+AKC  V+ +  VF RT  +  V W+
Sbjct: 334 AQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWS 393

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           A++ G   +G AR+A+ L+R M  + V PND T   LL A      +++       +  +
Sbjct: 394 AMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADH 453

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
                 +    +ID+  + G L+ A+++   +P++   + VW  +++    H H E
Sbjct: 454 KINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQ-PGVTVWGALLSACKKHRHVE 508



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 103/204 (50%)

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           R +HA  +   L+    + T LI   +    +  + QVF    + +  PWNAI+ G   N
Sbjct: 38  RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRN 97

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
              + A+ ++ +M +  V P+  T   LL A   L+ LQ    +H  + R GF + V V 
Sbjct: 98  NHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQ 157

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
            GLI +Y+KC  L  A  +F  +P+ ++ IV W+ I++ Y  +G    A+ +F +M +  
Sbjct: 158 NGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMD 217

Query: 513 VQPNEVTFTSALHACSHGGLLDEG 536
           V+P+ V   S L+A +    L++G
Sbjct: 218 VKPDCVALVSVLNAFTCLQDLEQG 241


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/634 (35%), Positives = 350/634 (55%), Gaps = 8/634 (1%)

Query: 34  QLHAFIITSGPLF-THLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           Q+H  ++  G +   ++ +SL+  Y     + + R+LFD +  ++SF + T++  Y++ G
Sbjct: 162 QIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQG 221

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
            S  SLK+F   ++ G   PD Y    V+ AC  L + + G  +H  VL +G  MD  + 
Sbjct: 222 RSQVSLKLF-DQMKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMV 280

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N  I  Y    +V+  RK+FD M + +VVSW T+I+G  +N++ ++AL +F  M + G  
Sbjct: 281 NGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWN 340

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PD     SVL +CG L  +E GR +H       +  +    N L+DMY KC S+ +AR V
Sbjct: 341 PDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKV 400

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F+ M+  D+V++ +MI GY+    +  AL LF+ M+     P  L   SLL   +SLY+L
Sbjct: 401 FNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHL 460

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           +    +H   IK  +  +    +ALID+Y+KC+ V  +  VF     K  V W A+ +G 
Sbjct: 461 ELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGY 520

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
                  ++++L++ + +  ++PN+ T  +++ A + +A L+     H  +I+ GF    
Sbjct: 521 TQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDP 580

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            V+  L+D+Y+K GS+E AHK F  I    KD   W+ +IA Y  HG  E A+ +F++M+
Sbjct: 581 FVANTLVDMYAKSGSIEEAHKAF--ISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMI 638

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
             G++PN VTF   L ACSH GLLD G D F+ M          +HY C+V LLGRAG+L
Sbjct: 639 MEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSM-SQFGIEPGIEHYVCMVSLLGRAGKL 697

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629
            EA + I  MP+K    VW +LL AC + GNVELG  AA+      P + G+YVLLS ++
Sbjct: 698 YEAKEFIEKMPIKQAAVVWRSLLSACRVSGNVELGTYAAEMAISCNPADSGSYVLLSNIF 757

Query: 630 SAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           ++   W +   +R+ MD  G+ K P  S IEV N
Sbjct: 758 ASKGMWVNVRRLREKMDISGVVKEPGCSWIEVNN 791



 Score =  294 bits (753), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 195/615 (31%), Positives = 322/615 (52%), Gaps = 25/615 (4%)

Query: 29  IAGTKQLHAFIITSGPLFTH---LRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVM 82
           I   K++H+ I+  G    H   L ++L+ AY     V++   LFD MS ++   +++++
Sbjct: 54  IPCCKKIHSKIVVFG-FHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMV 112

Query: 83  KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
            MY  +    ++L +F+  +R     P+ Y    V++ACT        + +HG V+  G+
Sbjct: 113 SMYTHHSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGY 172

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
             D +V   LI  Y     +  AR +FD +   +  +W T+I+GY K   ++ +L +FD 
Sbjct: 173 VQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQ 232

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           M +  V PD   + SVL AC  LK +E G+ IH  V    +  +++  N  +D Y KC  
Sbjct: 233 MKEGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHK 292

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           V   R +FDRM +++VV+WT++I G   N   R+AL LF  M   G  P++    S+L++
Sbjct: 293 VQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNS 352

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           C SL  L++GR +HA+ IK N++ +  V+  LIDMYAKC+ +  + +VF   +    V +
Sbjct: 353 CGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSY 412

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           NA++ G        +A++LFR+M + +  P      SLL   A L  L+ +  IH  +I+
Sbjct: 413 NAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIK 472

Query: 443 YGFLSVVEVS-TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           YG +S+ E + + LID+YSKC  +  A  +F E  I+DKDIVVW+ + +GY      E +
Sbjct: 473 YG-VSLDEFAGSALIDVYSKCSRVGDARLVFEE--IQDKDIVVWTAMFSGYTQQSENEES 529

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC--I 559
           + L+K +  S ++PNE TF + + A S+   L  G    N ++   +     D +    +
Sbjct: 530 LKLYKCLQMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVI---KMGFDDDPFVANTL 586

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE---LEP 616
           VD+  ++G ++EA+    +   K T A W +++     HG  E     A  +FE   +E 
Sbjct: 587 VDMYAKSGSIEEAHKAFISTNWKDT-ACWNSMIATYAQHGEAE----KALQVFEDMIMEG 641

Query: 617 ENPGNYVLLSKLYSA 631
             P NYV    + SA
Sbjct: 642 LKP-NYVTFVGVLSA 655



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 141/477 (29%), Positives = 244/477 (51%), Gaps = 6/477 (1%)

Query: 27  KSIAGTKQLHAFIITSGPLF-THLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVM 82
           K + G KQ+H +++ SG +    + +  +  Y     V   R LFD M +++   + TV+
Sbjct: 256 KFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVI 315

Query: 83  KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
               QN    D+L +F+ M R+G +NPD +    V+ +C  L   + G  +H   +    
Sbjct: 316 AGCMQNSFHRDALDLFVEMARMG-WNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNI 374

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
           D D FV N LI MY     +  ARKVF+ M    +VS+N +I GY +     EAL +F  
Sbjct: 375 DNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFRE 434

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           M  S   P     VS+L     L  +E+   IH L+    +  +  A +AL+D+Y KC  
Sbjct: 435 MRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSR 494

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           V +ARLVF+ + ++D+V WT+M +GY    +   +L L++ +Q   ++PN  T  ++++A
Sbjct: 495 VGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITA 554

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
            S++  L+ G+  H   IK   + +  V   L+DMYAK   ++ + + F  T+ K T  W
Sbjct: 555 ASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKAFISTNWKDTACW 614

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           N+++A    +G A KA+++F  M++E ++PN  T   +L A +    L    +    + +
Sbjct: 615 NSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLLDLGFDHFDSMSQ 674

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           +G    +E    ++ +  + G L  A +   ++PIK +  VVW  +++   + G+ E
Sbjct: 675 FGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIK-QAAVVWRSLLSACRVSGNVE 730


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/636 (34%), Positives = 355/636 (55%), Gaps = 8/636 (1%)

Query: 33  KQLHAFIITSGPLFT-HLRSSLVRAY---GHVSNVRILFDEMSERSSFL-YNTVMKMYAQ 87
           KQ+H++I+ +   F   L ++L+  Y   G  +  R LF ++ +RS+ + +N ++  + +
Sbjct: 159 KQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGE 218

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NG   +SL+ +L + +       + ++   + AC    +   G  +H   +  GF+ D +
Sbjct: 219 NGLWENSLEYYL-LAKTENVKVVSSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPY 277

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           V   L+ MY     +++A KVF+ + +  +  WN LIS Y  N YA +AL ++  M    
Sbjct: 278 VHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCT 337

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           V  D  ++++VL +       ++GR+IH  +    L  +I   +AL+ MY K G  N A 
Sbjct: 338 VLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYAN 397

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +F  M ERDVV W S+I+G+  N   + AL  F+ M+ + V+P+S  + S++SAC+ L 
Sbjct: 398 SIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLE 457

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            +  G ++H + IK  L+ +V V ++L+DMY+K    + +  +F+    K  V WN+I++
Sbjct: 458 KVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIIS 517

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
               N L   ++ LF Q+L   + P+  +  S+L A + +A L +  ++H YL+R     
Sbjct: 518 CYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPF 577

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            ++V   LID+Y KCG L+ A  IF    I +K++V W+ +I GYG HG    A+ LF E
Sbjct: 578 DLQVENTLIDMYIKCGLLKYAQHIFER--ISEKNLVAWNSMIGGYGSHGECSKAIELFDE 635

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M  SG++P++VTF S L +C+H GL++EGL LF  M        R +HY  IVDL GRAG
Sbjct: 636 MRSSGIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAG 695

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
            L +AY  ++ MP++P  ++W +LL +C IH N+ELGE+ A  L  +EP    NYV L  
Sbjct: 696 CLGDAYSFVKNMPVEPDRSIWLSLLCSCKIHLNLELGEMVANKLLNMEPSKGSNYVQLLN 755

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           LY     W    N+R  M EKGL+K P  S IEVRN
Sbjct: 756 LYGEAELWDRTANLRASMKEKGLKKTPGCSWIEVRN 791



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 139/517 (26%), Positives = 254/517 (49%), Gaps = 38/517 (7%)

Query: 96  KMFLGMLRLGEYNP---DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCL 152
           + ++  L+L   +P     +TYP ++KAC  L+  + G  +H  ++ TG   D ++ + L
Sbjct: 35  RQYIEALKLYTKSPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSL 94

Query: 153 IAMYMNFGEVKAARKVFDAMWE-----HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           I +Y+  G    A KVFD + +       V  WN++I GYF+    +E +V F  M  SG
Sbjct: 95  INIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSG 154

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
            +                     G+ IH  +    L  +     AL+D Y KCG   EAR
Sbjct: 155 YKE--------------------GKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEAR 194

Query: 268 LVFDRMSER-DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
            +F ++ +R ++V W  MI G+  NG   N+L  + L + E V+  S +    LSAC   
Sbjct: 195 YLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQG 254

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
            ++  G+ +H   IK   E +  V T+L+ MY KC +++ + +VF     K+   WNA++
Sbjct: 255 EFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALI 314

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           +  V NG A  A+ +++QM +  V  +  T+ ++L + ++         IH  +++    
Sbjct: 315 SAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQ 374

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           S + + + L+ +YSK G    A+ IFS   +K++D+V W  +I+G+  +   + A+  F+
Sbjct: 375 SSITIQSALLTMYSKFGDSNYANSIFS--TMKERDVVAWGSVISGFCQNRKYKEALDFFR 432

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLG 564
            M    V+P+     S + AC+    +D G  +  F++++     + D +  + ++D+  
Sbjct: 433 AMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGL---QLDVFVASSLLDMYS 489

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
           + G  + A ++   MPLK   A W +++ +C    N+
Sbjct: 490 KFGFPERAGNIFSDMPLKNLVA-WNSII-SCYCRNNL 524


>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 690

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/658 (35%), Positives = 366/658 (55%), Gaps = 20/658 (3%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRS------SLVRAY----GHVSNVRI 65
           ++ L+++   TKS+   K +H  I+T G     LRS      SL+  Y     H S  R+
Sbjct: 6   LLSLLRECTNTKSLRQAKLVHQRILTVG-----LRSDVVLCKSLINVYFACKDHCS-ARL 59

Query: 66  LFDEMSERSS-FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           +F+ +  RS  +++N+++  Y++N   HD+LK+F  +L      PD++TYP VIKA   L
Sbjct: 60  VFENIDIRSDVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGAL 119

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
               LG  +H  V+ +G   D  V + L+ MY  F   + + +VFD M E  V SWNT+I
Sbjct: 120 GREFLGRMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVI 179

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           S +++   A++AL +F  M +S  EP+  S+   + AC  L  +E G+ IH         
Sbjct: 180 SSFYQRGDAEKALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFE 239

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            +    +ALVDMY +C  +  AR VF +M  + +V W SMI GY   GD ++ + L   M
Sbjct: 240 LDEYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRM 299

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
             EG RP+  T+ S+L ACS    L  G+ +H + I+  ++ ++ +  +LID+Y KC  V
Sbjct: 300 IIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEV 359

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
           KL+  VF +T K     WN +++G V  G   KAV+++ QM+   V+P+  T  S+L   
Sbjct: 360 KLAETVFLKTQKDVVESWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTC 419

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           + LA L++   IH  +      +   + + L+D+YSKCG+++ A +IF+ IP   KD+V 
Sbjct: 420 SQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNVKEASRIFNSIP--KKDVVS 477

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+V+I+ YG HG    A+  F EM + GV+P+ VTF + L AC H GL+DEG+  F+ M 
Sbjct: 478 WTVMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAVLSACGHAGLIDEGVKYFSQMR 537

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA-VWGALLGACVIHGNVEL 603
             +   +  + Y+C++D+LGRAGRL EAY +++  P    +A +   L  AC +H +  L
Sbjct: 538 SKYGIEASIEQYSCLIDILGRAGRLLEAYGILQQKPETRDNAELLSTLFCACCLHRDHLL 597

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           G   AK L E  P++   Y +L  LY++   W  A+ VR  M E G+RK P  S IE+
Sbjct: 598 GYTIAKLLVEKYPDDASTYTVLFNLYASGESWDAAKRVRLKMKEVGMRKKPGCSWIEM 655



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 112/397 (28%), Positives = 199/397 (50%), Gaps = 16/397 (4%)

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           + + ++S+L  C   K +   +++H+ +    L  ++    +L+++Y  C     ARLVF
Sbjct: 2   ESSKLLSLLRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHCSARLVF 61

Query: 271 DRMSER-DVVTWTSMINGYALNGDVRNALGLFQ-LMQFEGVRPNSLTIGSLLSACSSLYY 328
           + +  R DV  W S+++GY+ N    + L +F+ L+      P+S T  +++ A  +L  
Sbjct: 62  ENIDIRSDVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGR 121

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
              GR +H   +K    C+V+V ++L+ MYAK NL + S QVF    ++    WN +++ 
Sbjct: 122 EFLGRMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISS 181

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
               G A KA+ELF +M     EPN  ++   + A + L  L++   IH   ++  F   
Sbjct: 182 FYQRGDAEKALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELD 241

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             V++ L+D+Y +C  LE A ++F +  ++ K +V W+ +I GY   G  ++ V L   M
Sbjct: 242 EYVNSALVDMYGRCDFLEMAREVFQQ--MRRKSLVAWNSMIRGYVARGDSKSCVELLNRM 299

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRA 566
           +  G +P++ T TS L ACS    L  G  +  +++   ++   AD Y    ++DL  + 
Sbjct: 300 IIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVI---RSVVDADIYINCSLIDLYFKC 356

Query: 567 GRLDEAYDLIRTMPLKPTHAV---WGALLGACVIHGN 600
           G +     L  T+ LK    V   W  ++   V  GN
Sbjct: 357 GEV----KLAETVFLKTQKDVVESWNVMISGYVSVGN 389


>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/597 (37%), Positives = 341/597 (57%), Gaps = 8/597 (1%)

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
            RS + +N +++    NG    +L ++  M   G +  +N TYP+++KAC +L   + G 
Sbjct: 8   RRSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHG-NNLTYPLLLKACANLPSIQHGT 66

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            LHG VL  GF  DTFV   L+ MY     V +AR+VFD M + SVVSWN ++S Y + +
Sbjct: 67  MLHGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRS 126

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE---MGRMIHE-LVAGGRLGKNI 247
              +AL +   M   G EP  ++ VS+L     L   E   +G+ IH  L+  G +   +
Sbjct: 127 SMDQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEV 186

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
           +  N+L+ MYV+   ++EAR VFD M E+ +++WT+MI GY   G    A GLF  MQ +
Sbjct: 187 SLANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQ 246

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
            V  + +   +L+S C  +  L    S+H+  +K     +  VE  LI MYAKC  +  +
Sbjct: 247 SVGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSA 306

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
            ++F    +K  + W +++AG VH G   +A++LFR+M+   + PN ATL +++ A A L
Sbjct: 307 RRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACADL 366

Query: 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
             L     I  Y+   G  S  +V T LI +YSKCGS+  A ++F  +   DKD+ VW+ 
Sbjct: 367 GSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERV--TDKDLTVWTS 424

Query: 488 IIAGYGMHGHGETAVSLFKEMVQS-GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
           +I  Y +HG G  A+SLF +M  + G+ P+ + +TS   ACSH GL++EGL  F  M ++
Sbjct: 425 MINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLKYFKSMQKD 484

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
                  +H TC++DLLGR G+LD A + I+ MP      VWG LL AC IHGNVELGE+
Sbjct: 485 FGITPTVEHCTCLIDLLGRVGQLDLALNAIQGMPPDVQAQVWGPLLSACRIHGNVELGEL 544

Query: 607 AAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           A   L +  P + G+YVL++ LY+++ +WK+A  +R+ MD KGL K    S +EV +
Sbjct: 545 ATVRLLDSSPGSSGSYVLMANLYTSLGKWKEAHMMRNSMDGKGLVKESGWSQVEVTD 601



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 141/491 (28%), Positives = 249/491 (50%), Gaps = 12/491 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYG---HVSNVRILFDEMSERS 74
           L++  A   SI     LH  ++  G    T ++++LV  Y    HV++ R +FDEM +RS
Sbjct: 52  LLKACANLPSIQHGTMLHGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRS 111

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL---AWRKLGI 131
              +N ++  Y++  +   +L +   M  LG + P   T+  ++   ++L    +  LG 
Sbjct: 112 VVSWNAMVSAYSRRSSMDQALSLLKEMWVLG-FEPTASTFVSILSGYSNLDSFEFHLLGK 170

Query: 132 ALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           ++H  ++  G   ++  + N L+ MY+ F  +  ARKVFD M E S++SW T+I GY K 
Sbjct: 171 SIHCCLIKLGIVYLEVSLANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKI 230

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
            +A EA  +F  M    V  D    ++++  C  ++++ +   +H LV      +     
Sbjct: 231 GHAVEAYGLFYQMQHQSVGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVE 290

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           N L+ MY KCG++  AR +FD + E+ +++WTSMI GY   G    AL LF+ M    +R
Sbjct: 291 NLLITMYAKCGNLTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIR 350

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           PN  T+ +++SAC+ L  L  G+ +  +     LE +  V+T+LI MY+KC  +  + +V
Sbjct: 351 PNGATLATVVSACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREV 410

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV-EVVEPNDATLNSLLPAYAILAD 429
           F R + K    W +++     +G+  +A+ LF +M   E + P+     S+  A +    
Sbjct: 411 FERVTDKDLTVWTSMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGL 470

Query: 430 LQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
           +++ +     + + +G    VE  T LID+  + G L+ A      +P  D    VW  +
Sbjct: 471 VEEGLKYFKSMQKDFGITPTVEHCTCLIDLLGRVGQLDLALNAIQGMP-PDVQAQVWGPL 529

Query: 489 IAGYGMHGHGE 499
           ++   +HG+ E
Sbjct: 530 LSACRIHGNVE 540



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 127/431 (29%), Positives = 214/431 (49%), Gaps = 8/431 (1%)

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
           +  S+ +WN +I     N +  + L ++  M  SGV  +  +   +L AC  L  I+ G 
Sbjct: 7   FRRSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGT 66

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
           M+H  V       +     ALVDMY KC  V  AR VFD M +R VV+W +M++ Y+   
Sbjct: 67  MLHGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRS 126

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK---RGRSLHAWTIKQNL-ECEV 348
            +  AL L + M   G  P + T  S+LS  S+L   +    G+S+H   IK  +   EV
Sbjct: 127 SMDQALSLLKEMWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEV 186

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            +  +L+ MY +  L+  + +VF    +K  + W  ++ G V  G A +A  LF QM  +
Sbjct: 187 SLANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQ 246

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            V  +     +L+     + DL  A ++H  +++ G      V   LI +Y+KCG+L SA
Sbjct: 247 SVGIDFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDPVENLLITMYAKCGNLTSA 306

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            +IF    I +K ++ W+ +IAGY   GH   A+ LF+ M+++ ++PN  T  + + AC+
Sbjct: 307 RRIFD--LIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACA 364

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
             G L  G ++  ++  N    S     T ++ +  + G + +A ++   +  K    VW
Sbjct: 365 DLGSLSIGQEIEEYIFLNGLE-SDQQVQTSLIHMYSKCGSIVKAREVFERVTDKDL-TVW 422

Query: 589 GALLGACVIHG 599
            +++ +  IHG
Sbjct: 423 TSMINSYAIHG 433


>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
 gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/660 (35%), Positives = 365/660 (55%), Gaps = 10/660 (1%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY----GHVSNVRI 65
           +++ L+  L +   +TKS+   K +H  I+T G      L  SL+  Y     H S  R 
Sbjct: 2   ESSKLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCS-ARH 60

Query: 66  LFDEMSERSS-FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           +F+    RS  +++N++M  Y++N   HD+L++F  +L      PD++T+P VIKA   L
Sbjct: 61  VFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGAL 120

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
               LG  +H  V+ +G+  D  V + L+ MY  F   + + +VFD M E  V SWNT+I
Sbjct: 121 GREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVI 180

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           S ++++  A++AL +F  M  SG EP+  S+   + AC  L  +E G+ IH         
Sbjct: 181 SCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFE 240

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            +    +ALVDMY KC  +  AR VF +M  + +V W SMI GY   GD ++ + +   M
Sbjct: 241 LDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRM 300

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
             EG RP+  T+ S+L ACS    L  G+ +H + I+  +  ++ V  +LID+Y KC   
Sbjct: 301 IIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEA 360

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
            L+  VF++T K     WN +++  +  G   KAVE++ QM+   V+P+  T  S+LPA 
Sbjct: 361 NLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPAC 420

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           + LA L++   IH  +      +   + + L+D+YSKCG+ + A +IF+ IP   KD+V 
Sbjct: 421 SQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIP--KKDVVS 478

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+V+I+ YG HG    A+  F EM + G++P+ VT  + L AC H GL+DEGL  F+ M 
Sbjct: 479 WTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMR 538

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA-VWGALLGACVIHGNVEL 603
             +      +HY+C++D+LGRAGRL EAY++I+  P    +A +   L  AC +H    L
Sbjct: 539 SKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSL 598

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           G+  A+ L E  P++   Y++L  LY++   W  A  VR  M E GLRK P  S IE+ +
Sbjct: 599 GDRIARLLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSD 658


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/652 (33%), Positives = 360/652 (55%), Gaps = 11/652 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG--PLFTHLRSSLVRAYGHVSNV---RILFDEMSER 73
           L+   ++ +S+   +++H  ++T    P    L++ ++  YG   ++   R +FD M  +
Sbjct: 104 LINACSSLRSLEHGRKIHRHMLTCNYQPDMI-LQNHILSMYGKCGSLKEARNMFDSMPLK 162

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           +   + +++  Y++ G   +++ +++ MLR G   PD++T+  ++K+C+ L   KL   L
Sbjct: 163 NVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHI-PDHFTFGSIVKSCSGLDDFKLARQL 221

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H  VL + F  D    N LI+MY  F ++  A  VF  +    ++SW ++I+G+ +  Y 
Sbjct: 222 HAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYE 281

Query: 194 KEALVVFDWMLKSGV-EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            EAL  F  ML   V +P+     S   AC  L E + GR IH L     LG ++ A  +
Sbjct: 282 LEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCS 341

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L DMY KCG +  AR VF  + + D+V W ++I G+A   + + +   F  M+  G+ PN
Sbjct: 342 LCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPN 401

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            +T+ SLL ACS    L  G  +H++ +K     ++ V  +L+ MY+KC+ +  + QVF 
Sbjct: 402 DVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFE 461

Query: 373 RT-SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
              +K   V WN +L  C+    A + + L + M    ++P+  TL ++L +   +A  +
Sbjct: 462 DIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYE 521

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               IHC++++ G    + VS  LI++Y+KCGSLE A K+F  I   + DI+ WS +I G
Sbjct: 522 VGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSI--GNPDIISWSSLIVG 579

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           Y   G G+ A  LF+ M   GV+PNE+TF   L ACSH G+++EGL L+  M E+++   
Sbjct: 580 YAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISP 639

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
             +H +C+VDLL RAG LD A D IR MP  P   VW  LL AC +HGN+E+G+ AA+ +
Sbjct: 640 TKEHCSCMVDLLARAGCLDVAEDFIRQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENV 699

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            +++P N    V+L  ++++   WKD   +R  M    + K P  S IE+++
Sbjct: 700 LKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKD 751



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 166/546 (30%), Positives = 264/546 (48%), Gaps = 35/546 (6%)

Query: 93  DSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCL 152
           ++LK F    +       + TY  +I AC+ L   + G  +H  +L   +  D  + N +
Sbjct: 80  EALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHI 139

Query: 153 IAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDC 212
           ++MY   G +K AR +FD+M   +VVSW ++ISGY +      A+ ++  ML+SG  PD 
Sbjct: 140 LSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDH 199

Query: 213 ASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR 272
            +  S++ +C  L + ++ R +H  V     G ++ A NAL+ MY K   + +A  VF R
Sbjct: 200 FTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSR 259

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV-RPNSLTIGSLLSACSSLYYLKR 331
           +  +D+++W SMI G++  G    AL  F+ M  + V +PN    GS  SACS L     
Sbjct: 260 IIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDC 319

Query: 332 GRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVH 391
           GR +H   IK  L  ++    +L DMYAKC  ++ +  VF    K   V WNAI+AG   
Sbjct: 320 GRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFAS 379

Query: 392 NGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEV 451
              A+++   F QM    + PND T+ SLL A +    L   + +H Y+++ GF   + V
Sbjct: 380 VSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPV 439

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
              L+ +YSKC +L  A ++F +I  K  DIV W+ ++            + L K M  S
Sbjct: 440 CNSLLSMYSKCSNLNDALQVFEDIGNK-ADIVSWNTLLTACLQQNQAGEVLRLTKLMFAS 498

Query: 512 GVQPNEVTFTSALHACS-----------HGGLLDEGLDL----FNFMLENHQTCSRADHY 556
            ++P+ VT T+ L +             H  ++  GL+L     N ++  +  C   +  
Sbjct: 499 RIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECA 558

Query: 557 TCIVDLLG---------------RAGRLDEAYDLIRTMP---LKPTHAVWGALLGACVIH 598
             + D +G               +AG   EA++L RTM    +KP    +  +L AC   
Sbjct: 559 RKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHI 618

Query: 599 GNVELG 604
           G VE G
Sbjct: 619 GMVEEG 624


>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like, partial [Brachypodium distachyon]
          Length = 735

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 232/639 (36%), Positives = 357/639 (55%), Gaps = 11/639 (1%)

Query: 34  QLHAFIITSGPLFTHLRSSLVRAY----GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           +LHA  + SG L      + + A+    GH  + R +FDEM  R    +N+++  +  N 
Sbjct: 97  ELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLANK 156

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPI-VIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
              D+ +  L M+R G   P N    + V+ AC        G+ +HG VL TG D    +
Sbjct: 157 MFDDARQALLSMMRSGV--PVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNL 214

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           GN L+ MY  FG V+A+ KVF+ M E + VSWN+ I  +       + L +F  M + G 
Sbjct: 215 GNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGF 274

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P   ++ S+LPA   L   ++GR +H       +  +I   N+LVDMY K GS+ +A  
Sbjct: 275 MPGSITLSSLLPALVELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACA 334

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VF+++  R+VV+W +MI     NG    A GL   MQ +G  PNS+T+ +LL ACS +  
Sbjct: 335 VFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMAS 394

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           LK G+ +HAW+I+  L  ++ +  ALIDMYAKC  ++L+  +F   S+K  V +N ++ G
Sbjct: 395 LKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIF-DLSEKDDVSYNTLILG 453

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
              +  + +++ LF+Q+    +E +  +    L A   L+  +Q   IH  L+R    + 
Sbjct: 454 YSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRLLSNH 513

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             ++  L+ +Y+K G L++A KIF+ I  K+KD+  W+ +I GYGMHG  + A  LF  M
Sbjct: 514 PFLANTLLGLYTKGGMLDTASKIFNRI--KEKDVASWNNMIMGYGMHGQIDAAFHLFDLM 571

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
              GV  + V++ + L  CSHGGL++ G   F+ ML  +    +  HY C+VDLLGR+G+
Sbjct: 572 KDHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLAQNLEPQQM-HYACMVDLLGRSGQ 630

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           L E+ ++I  MP      VWGALLGAC IHGN+EL + AA  LFEL+PE+ G Y +L  +
Sbjct: 631 LTESVEIILDMPFHANSDVWGALLGACRIHGNIELAQYAADHLFELKPEHSGYYSVLRNM 690

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           Y+   RW +A  +R +M  + ++K PA+S ++  N L A
Sbjct: 691 YAEAGRWNEAHKIRTLMKSRKVQKNPAYSWVQSGNKLQA 729



 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 186/556 (33%), Positives = 288/556 (51%), Gaps = 20/556 (3%)

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL--G 130
           RS+FL+N++ +  +      ++L ++  MLR G  +PD+ T+P  + A    A      G
Sbjct: 37  RSAFLWNSLSRALSSASLPTEALLVYNHMLRSG-VSPDDRTFPFALHAAAAAAQAHPAKG 95

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           + LH   L +G   D F GN L+A Y   G    AR+VFD M    VVSWN+L+S +  N
Sbjct: 96  LELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLAN 155

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
               +A      M++SGV  + AS+VSV+PACG  +E   G  +H LV    L   +   
Sbjct: 156 KMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVNLG 215

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           NALVDMY K G V  +  VF+ M ER+ V+W S I  +   G   + L LF+ M   G  
Sbjct: 216 NALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFM 275

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           P S+T+ SLL A   L Y   GR +H ++IK+ +E ++ V  +L+DMYAK   ++ +  V
Sbjct: 276 PGSITLSSLLPALVELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAV 335

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F +   +  V WNA++A  V NG   +A  L  +M  +   PN  TL +LLPA + +A L
Sbjct: 336 FEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASL 395

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
           +    IH + IR G +  + +S  LID+Y+KCG L  A  IF    + +KD V ++ +I 
Sbjct: 396 KTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFD---LSEKDDVSYNTLIL 452

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD----LFNFMLEN 546
           GY        +++LFK++   G++ + ++F  AL AC++     +G +    L   +L N
Sbjct: 453 GYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRRLLSN 512

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
           H   +       ++ L  + G LD A  +   +  K   A W  ++    +HG ++    
Sbjct: 513 HPFLA-----NTLLGLYTKGGMLDTASKIFNRIKEKDV-ASWNNMIMGYGMHGQID---- 562

Query: 607 AAKWLFELEPENPGNY 622
           AA  LF+L  ++   Y
Sbjct: 563 AAFHLFDLMKDHGVTY 578


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/676 (34%), Positives = 362/676 (53%), Gaps = 17/676 (2%)

Query: 4   PSHHTLPKT-THLVIK----LVQQYAATKSIAGTKQLHAFIITSGPLFTH---LRSSLVR 55
           P+   + KT +HL I+    L++     + +   K +H F++ S     H   L + +  
Sbjct: 54  PNSVKVDKTDSHLQIQPLVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAH 113

Query: 56  AYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNY 112
           AY   S++     LFD+MS+R++F +  ++   A+NG   D  + F  M   G + PD +
Sbjct: 114 AYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIF-PDQF 172

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
            Y  +++ C  L   +LG  +H +++I GF   TFV   L+ MY    E++ + KVF+ M
Sbjct: 173 AYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTM 232

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
            E +VVSWN +I+G+  N    +A  +F  M+  GV PD  + + V  A G L+++   +
Sbjct: 233 TEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAK 292

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR--MSERDVVTWTSMINGYAL 290
            +        +  N     AL+DM  KCGS+ EAR +F+   ++ R    W +MI+GY  
Sbjct: 293 EVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLR 352

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE-VI 349
           +G    AL LF  M    +  +  T  S+ +A ++L  L  G+ +HA  IK  LE   V 
Sbjct: 353 SGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVS 412

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           +  A+ + YAKC  ++   +VF R   +  + W +++          KA+E+F  M  E 
Sbjct: 413 ISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEG 472

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           + PN  T +S+L + A L  L+    +H  + + G      + + L+D+Y+KCG L  A 
Sbjct: 473 IAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAK 532

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
           K+F+ I   + D V W+ IIAG+  HG  + A+ LF+ MVQ GV+PN VTF   L ACSH
Sbjct: 533 KVFNRIS--NADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSH 590

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
           GGL++EGL  F  M + +      +HY CIVDLL R G L++A + I  MP++P   VW 
Sbjct: 591 GGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQ 650

Query: 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
            LLGAC +HGNVELGE+AA+ +   + EN   YVLLS  Y     +KD  ++R VM E+G
Sbjct: 651 TLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHVMKEQG 710

Query: 650 LRKAPAHSLIEVRNIL 665
           ++K P  S I V   L
Sbjct: 711 VKKEPGCSWISVNGTL 726


>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
 gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/531 (39%), Positives = 312/531 (58%), Gaps = 3/531 (0%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  +H      G D D  V   ++ MY   GEV  A+++F  +    +V+W+ +I+ + +
Sbjct: 7   GTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQ 66

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           + Y +EAL +F  M   G++ +   ++S LPAC  +  +++G+ +H       +  +I+ 
Sbjct: 67  SGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDLDISV 126

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
             ALV MY KCG    A  +F+RM  +DVVTW +MINGYA  G+   AL +F  +Q   +
Sbjct: 127 GTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQLSEL 186

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
            PNS T+  LL A + L  L +G  +H   IK   E E  V+TALIDMYAKC  +  +  
Sbjct: 187 NPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEF 246

Query: 370 VFARTS-KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           +F RT  +K  V WN ++AG +H+G A  A   F QM +E ++PN  T+ ++LPA A L+
Sbjct: 247 LFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLS 306

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            L+  M +H Y+IR GF S   V   LID+Y+KCG L+ + KIF E+  K+KD V W+V+
Sbjct: 307 ALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEM--KNKDTVSWNVM 364

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           +AGY +HG G  A+ LF  M  S ++ +  +F + L AC H GL+ EG  +F+ M + HQ
Sbjct: 365 LAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGEGRKIFDSMSKQHQ 424

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAA 608
                +HY C+ DLLGRAG  +E  DLI++MP++P   VWGALLGA  +H NV+L E A 
Sbjct: 425 LEPDLEHYACMADLLGRAGLFNEVLDLIKSMPMEPDAGVWGALLGASTMHSNVQLAEFAL 484

Query: 609 KWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
             L +LE +N  +Y  LS  Y+   RW D  N R  + + GLRK+P +S +
Sbjct: 485 HHLDKLEHKNLTHYAALSNTYARSGRWADVGNTRSKITKTGLRKSPGYSWV 535



 Score =  234 bits (598), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 129/375 (34%), Positives = 203/375 (54%), Gaps = 3/375 (0%)

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           ++ +  G  IH+      +  ++A    ++ MY +CG V+ A+ +F  +  RD+V W+++
Sbjct: 1   MRALGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAI 60

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           I  +  +G  + AL LF+ MQ EG++ N + + S L AC+ +  LK G+S+H   +K N+
Sbjct: 61  IAAFVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANV 120

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
           + ++ V TAL+ MYAKC    L+  +F R   K  V WNA++ G    G    A+E+F +
Sbjct: 121 DLDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHK 180

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           + +  + PN  T+  LLPA+A+L DL Q   IH  +I+ GF S   V T LID+Y+KCGS
Sbjct: 181 LQLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGS 240

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           L  A  +F     + KD V W+V+IAGY   GH   A S F +M    +QPN VT  + L
Sbjct: 241 LSGAEFLFHRTGCR-KDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVL 299

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            A +H   L  G+ L  +++      S+     C++D+  + G LD +  +   M  K T
Sbjct: 300 PAVAHLSALRAGMTLHAYVIRMGFQ-SKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDT 358

Query: 585 HAVWGALLGACVIHG 599
              W  +L    +HG
Sbjct: 359 -VSWNVMLAGYAVHG 372



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/446 (28%), Positives = 213/446 (47%), Gaps = 4/446 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V   + LF E+  R    ++ ++  + Q+G   ++L +F  M   G    +       
Sbjct: 37  GEVDTAKQLFQEIKGRDLVAWSAIIAAFVQSGYPQEALSLFRSMQNEG-LQANKVILLSS 95

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + AC +++  KLG ++H   +    D+D  VG  L++MY   G    A  +F+ M    V
Sbjct: 96  LPACAEVSSLKLGKSMHCCAVKANVDLDISVGTALVSMYAKCGFFALALTLFNRMPCKDV 155

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V+WN +I+GY +      AL +F  +  S + P+  ++V +LPA   L +++ G  IH  
Sbjct: 156 VTWNAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGK 215

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER-DVVTWTSMINGYALNGDVRN 296
           +             AL+DMY KCGS++ A  +F R   R D V+W  MI GY  +G   +
Sbjct: 216 IIKCGFESECHVKTALIDMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAID 275

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A   F  M+ E ++PN +TI ++L A + L  L+ G +LHA+ I+   + +  V   LID
Sbjct: 276 AFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGMTLHAYVIRMGFQSKTPVGNCLID 335

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MYAKC  +  S ++F     K TV WN +LAG   +G    A+ELF +M    +  +  +
Sbjct: 336 MYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSFS 395

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSV-VEVSTGLIDIYSKCGSLESAHKIFSEI 475
             ++L A      + +   I   + +   L   +E    + D+  + G       +   +
Sbjct: 396 FINVLSACRHAGLIGEGRKIFDSMSKQHQLEPDLEHYACMADLLGRAGLFNEVLDLIKSM 455

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETA 501
           P+ + D  VW  ++    MH + + A
Sbjct: 456 PM-EPDAGVWGALLGASTMHSNVQLA 480



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 147/325 (45%), Gaps = 14/325 (4%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMS 71
           ++ L+  +A    +     +H  II  G     H++++L+  Y   G +S    LF    
Sbjct: 193 MVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSLSGAEFLFHRTG 252

Query: 72  ERSSFL-YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
            R   + +N ++  Y  +G + D+   F  M +L    P+  T   V+ A   L+  + G
Sbjct: 253 CRKDEVSWNVMIAGYMHSGHAIDAFSAFCQM-KLENIQPNIVTIVTVLPAVAHLSALRAG 311

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           + LH  V+  GF   T VGNCLI MY   G +  + K+F  M     VSWN +++GY  +
Sbjct: 312 MTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVH 371

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG-RLGKNIAA 249
                A+ +F  M  S +  D  S ++VL AC +   I  GR I + ++   +L  ++  
Sbjct: 372 GRGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGEGRKIFDSMSKQHQLEPDLEH 431

Query: 250 WNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
           +  + D+  + G  NE   +   M  E D   W +++    ++ +V+  L  F L   + 
Sbjct: 432 YACMADLLGRAGLFNEVLDLIKSMPMEPDAGVWGALLGASTMHSNVQ--LAEFALHHLDK 489

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGR 333
           +   +LT  + LS      Y + GR
Sbjct: 490 LEHKNLTHYAALSN----TYARSGR 510


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/645 (35%), Positives = 365/645 (56%), Gaps = 17/645 (2%)

Query: 28  SIAGT--KQLHAFIITSGPLFTHLR--SSLVRAY---GHVSNVRILFDEMSERSSFLYNT 80
           S  GT  +Q+H   +  G L  HL   +SLV  Y   G+V + R +FDEM +R    +N+
Sbjct: 115 SFNGTVGEQVHCQCVKCG-LVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNS 173

Query: 81  VMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT 140
           ++  Y+ N  +    ++F  ++++  Y PD YT   VI A  +     +G+ +H  V+  
Sbjct: 174 LLTGYSWNRFNDQVWELFC-LMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKL 232

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           GF+ +  V N LI+M    G ++ AR VFD M     VSWN++I+G+  N    EA   F
Sbjct: 233 GFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETF 292

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           + M  +G +P  A+  SV+ +C  LKE+ + R++H       L  N     AL+    KC
Sbjct: 293 NNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKC 352

Query: 261 GSVNEARLVFDRM-SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
             +++A  +F  M   + VV+WT+MI+GY  NGD   A+ LF LM+ EGV+PN  T  ++
Sbjct: 353 KEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTI 412

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           L+   +++       +HA  IK N E    V TAL+D + K   +  + +VF     K  
Sbjct: 413 LTVQHAVFI----SEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDV 468

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA-YAILADLQQAMNIHC 438
           + W+A+LAG    G   +A ++F Q+  E ++PN+ T  S++ A  A  A ++Q    H 
Sbjct: 469 IAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHA 528

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           Y I+    + + VS+ L+ +Y+K G++ESAH+IF     K++D+V W+ +I+GY  HG  
Sbjct: 529 YAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQ--KERDLVSWNSMISGYAQHGQA 586

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
           + A+ +F+EM +  ++ + +TF   + AC+H GL+ +G + FN M+ +H      +HY+C
Sbjct: 587 KKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSC 646

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
           ++DL  RAG L +A D+I  MP  P   VW  +L A  +H N+ELG++AA+ +  LEP++
Sbjct: 647 MIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQH 706

Query: 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
              YVLLS +Y+A   W +  NVR +MD++ ++K P +S IEV+N
Sbjct: 707 SAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKN 751



 Score =  261 bits (667), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 162/545 (29%), Positives = 270/545 (49%), Gaps = 23/545 (4%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LFD+   R    +N ++  Y++   + ++L +F+ + R G  +PD+YT   V+  C    
Sbjct: 58  LFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSG-LSPDSYTMSCVLSVCAGSF 116

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
              +G  +H + +  G      VGN L+ MY   G V+  R+VFD M +  VVSWN+L++
Sbjct: 117 NGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLT 176

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY  N +  +   +F  M   G  PD  +V +V+ A      + +G  IH LV       
Sbjct: 177 GYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFET 236

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
                N+L+ M  K G + +AR+VFD M  +D V+W SMI G+ +NG    A   F  MQ
Sbjct: 237 ERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQ 296

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
             G +P   T  S++ +C+SL  L   R LH  T+K  L     V TAL+    KC  + 
Sbjct: 297 LAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEID 356

Query: 366 LSFQVFARTSK-KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
            +F +F+     +  V W A+++G + NG   +AV LF  M  E V+PN  T       Y
Sbjct: 357 DAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFT-------Y 409

Query: 425 AILADLQQAM---NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
           + +  +Q A+    IH  +I+  +     V T L+D + K G++  A K+F    I+ KD
Sbjct: 410 STILTVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFE--LIETKD 467

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH-GGLLDEGLDLF 540
           ++ WS ++AGY   G  E A  +F ++ + G++PNE TF S ++AC+     +++G    
Sbjct: 468 VIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFH 527

Query: 541 NFMLE---NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
            + ++   N+  C  +     +V L  + G ++ A+++ +    +     W +++     
Sbjct: 528 AYAIKLRLNNALCVSSS----LVTLYAKRGNIESAHEIFKRQKERDL-VSWNSMISGYAQ 582

Query: 598 HGNVE 602
           HG  +
Sbjct: 583 HGQAK 587



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 137/466 (29%), Positives = 230/466 (49%), Gaps = 12/466 (2%)

Query: 163 KAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC 222
           + A+++FD      +   N L+  Y +    +EAL +F  + +SG+ PD  ++  VL  C
Sbjct: 53  RFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVC 112

Query: 223 GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
                  +G  +H       L  +++  N+LVDMY K G+V + R VFD M +RDVV+W 
Sbjct: 113 AGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWN 172

Query: 283 SMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           S++ GY+ N        LF LMQ EG RP+  T+ ++++A ++   +  G  +HA  +K 
Sbjct: 173 SLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKL 232

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
             E E +V  +LI M +K  +++ +  VF     K +V WN+++AG V NG   +A E F
Sbjct: 233 GFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETF 292

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
             M +   +P  AT  S++ + A L +L     +HC  ++ G  +   V T L+   +KC
Sbjct: 293 NNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKC 352

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
             ++ A  +FS +    + +V W+ +I+GY  +G  + AV+LF  M + GV+PN  T+++
Sbjct: 353 KEIDDAFSLFSLMH-GVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYST 411

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
            L    H   + E       +  N++  S     T ++D   + G + +A  +   +  K
Sbjct: 412 IL-TVQHAVFISE--IHAEVIKTNYEKSSSVG--TALLDAFVKIGNISDAVKVFELIETK 466

Query: 583 PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE--NPGNYVLLS 626
              A W A+L      G     E AAK   +L  E   P  +   S
Sbjct: 467 DVIA-WSAMLAGYAQAGET---EEAAKIFHQLTREGIKPNEFTFCS 508


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/611 (35%), Positives = 341/611 (55%), Gaps = 3/611 (0%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +G +S    +F EM       +NT++  +AQ G    +L++F  M RL  + PD  T   
Sbjct: 191 FGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEM-RLSGWTPDCVTIAS 249

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           ++ AC  +     G  LH  +L  G   D  +   L+ +Y+  G +  A ++F +    +
Sbjct: 250 LLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTN 309

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           VV WN ++  Y + +   ++  +F  M+ +GV P+  +   +L  C Y  EI +G  IH 
Sbjct: 310 VVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHL 369

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
           L        ++     L+DMY K G +++AR + + +  +DVV+WTSMI GY  +   + 
Sbjct: 370 LSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKE 429

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           AL  F+ MQ  G+ P+++ + S +SAC+ +  +++G+ +H+         +V +  AL++
Sbjct: 430 ALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVN 489

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           +YA+C   K +F +F     K  + WN +++G   +GL  +A+E+F +M    V+ N  T
Sbjct: 490 LYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFT 549

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
             S + A A LAD++Q   IH  +I+ G  S  EV+  LI +Y KCGS+E A   F E+ 
Sbjct: 550 FVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEM- 608

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
             +++ V W+ II     HG G  A+ LF +M Q G++PN+VTF   L ACSH GL++EG
Sbjct: 609 -SERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEG 667

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
           L  F  M   H    R DHY C+VD+LGRAG+LD A   +  MP+     VW  LL AC 
Sbjct: 668 LGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACR 727

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           +H N+E+GE+AAK+L ELEP +  +YVLLS  Y+   +W   ++VR +M ++G+RK P  
Sbjct: 728 VHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGR 787

Query: 657 SLIEVRNILTA 667
           S IEV+N++ A
Sbjct: 788 SWIEVKNVVHA 798



 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 163/569 (28%), Positives = 286/569 (50%), Gaps = 9/569 (1%)

Query: 35  LHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           +HA  IT G     +  +L   L    G V   R +F+++S R +  +  ++  YA+NG 
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             +++ ++  M   G   P  Y    V+ ACT  A  + G  +H +V   G   +T VGN
Sbjct: 124 GEEAVGLYHQMHCSGVV-PTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGN 182

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            LIA+Y+ FG +  A +VF  M     V++NTLIS + +    + AL +F+ M  SG  P
Sbjct: 183 ALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTP 242

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           DC ++ S+L AC  + ++  G+ +H  +    +  +     +L+D+YVKCG + EA  +F
Sbjct: 243 DCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIF 302

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
                 +VV W  M+  Y    D+  +  LF  M   GVRPN  T   LL  C+    + 
Sbjct: 303 KSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEIN 362

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
            G  +H  +IK   E ++ V   LIDMY+K   +  + ++      K  V W +++AG V
Sbjct: 363 LGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYV 422

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
            +   ++A+E F+ M +  + P++  L S + A A +  ++Q   IH  +   G+ + V 
Sbjct: 423 QHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVS 482

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           +   L+++Y++CG  + A  +F  I  KDK  + W+ +++G+   G  E A+ +F +M Q
Sbjct: 483 IWNALVNLYARCGRSKEAFSLFEAIEHKDK--ITWNGMVSGFAQSGLYEEALEVFIKMYQ 540

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
           +GV+ N  TF S++ A ++   + +G  +   +++   T S  +    ++ L G+ G ++
Sbjct: 541 AGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCT-SETEVANALISLYGKCGSIE 599

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           +A      M  +  H  W  ++ +C  HG
Sbjct: 600 DAKMQFFEMSER-NHVSWNTIITSCSQHG 627



 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 146/502 (29%), Positives = 253/502 (50%), Gaps = 12/502 (2%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSG--PLFTHLRSSLVRAY---GHVSNVRILFDEM 70
           +  L+   A+   +   KQLH++++ +G  P +  +  SL+  Y   G +     +F   
Sbjct: 247 IASLLAACASIGDLNKGKQLHSYLLKAGMSPDYI-IEGSLLDLYVKCGVIVEALEIFKSG 305

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
              +  L+N ++  Y Q      S  +F  M+  G   P+ +TYP +++ CT      LG
Sbjct: 306 DRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAG-VRPNEFTYPCLLRTCTYAGEINLG 364

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
             +H   + TGF+ D +V   LI MY  +G +  AR++ + +    VVSW ++I+GY ++
Sbjct: 365 EQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQH 424

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
            + KEAL  F  M   G+ PD   + S + AC  +K +  G+ IH  V       +++ W
Sbjct: 425 EFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIW 484

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           NALV++Y +CG   EA  +F+ +  +D +TW  M++G+A +G    AL +F  M   GV+
Sbjct: 485 NALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVK 544

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
            N  T  S +SA ++L  +K+G+ +HA  IK     E  V  ALI +Y KC  ++ +   
Sbjct: 545 YNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQ 604

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F   S++  V WN I+  C  +G   +A++LF QM  E ++PND T   +L A + +  +
Sbjct: 605 FFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLV 664

Query: 431 QQAMN-IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           ++ +         +G     +    ++DI  + G L+ A K   E+P+   + +VW  ++
Sbjct: 665 EEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPV-SANAMVWRTLL 723

Query: 490 AGYGMHGH---GETAVSLFKEM 508
           +   +H +   GE A     E+
Sbjct: 724 SACRVHKNIEIGELAAKYLLEL 745



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/460 (29%), Positives = 229/460 (49%), Gaps = 23/460 (5%)

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC------GYL 225
           M   +  S N  ++G+  +   ++ L +F   ++      C  + SV  AC      G +
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVR-----QCRGLGSVDFACALRECRGSV 55

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           K   +  +IH       LG++  A N L+D+Y K G V  AR VF+++S RD V+W +M+
Sbjct: 56  KHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAML 115

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           +GYA NG    A+GL+  M   GV P    + S+LSAC+     ++GR +HA   KQ   
Sbjct: 116 SGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSC 175

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
            E +V  ALI +Y +   + L+ +VF+       V +N +++     G    A+E+F +M
Sbjct: 176 SETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEM 235

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
            +    P+  T+ SLL A A + DL +   +H YL++ G      +   L+D+Y KCG +
Sbjct: 236 RLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVI 295

Query: 466 ESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
             A +IF      D+ ++V+W++++  YG       +  LF +MV +GV+PNE T+   L
Sbjct: 296 VEALEIFKS---GDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLL 352

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC--IVDLLGRAGRLDEAYDLIRTMPLK 582
             C++ G ++ G  +    L + +T   +D Y    ++D+  + G LD+A  ++  +  K
Sbjct: 353 RTCTYAGEINLGEQIH---LLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAK 409

Query: 583 PTHAVWGALLGACVIHGNVE--LGEVAAKWLFELEPENPG 620
                W +++   V H   +  L       LF + P+N G
Sbjct: 410 DV-VSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIG 448


>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 233/654 (35%), Positives = 361/654 (55%), Gaps = 12/654 (1%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSG--PLFTHLRSSLVRAYGH---VSNVRILFDEMS 71
           + L+      +S+   K++H  I+ S   P    L++ ++  YG    + + R  FD M 
Sbjct: 84  VNLILACTNVRSLKYGKRIHDHILKSNCQPDLV-LQNHILNMYGKCGSLKDARKAFDTMQ 142

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
            RS   +  ++  Y+QNG  +D++ M++ MLR G Y PD  T+  +IKAC       LG 
Sbjct: 143 LRSVVSWTIMISGYSQNGQENDAIIMYIQMLRSG-YFPDQLTFGSIIKACCIAGDIDLGG 201

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            LHG V+ +G+D      N LI+MY  FG++  A  VF  +    ++SW ++I+G+ +  
Sbjct: 202 QLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDVFTMISTKDLISWASMITGFTQLG 261

Query: 192 YAKEALVVFDWMLKSGV-EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
           Y  EAL +F  M + GV +P+     SV  AC  L + E GR I  + A   LG+N+ A 
Sbjct: 262 YEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGMCAKFGLGRNVFAG 321

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
            +L DMY K G +  A+  F ++   D+V+W ++I   A N DV  A+  F  M   G+ 
Sbjct: 322 CSLCDMYAKFGFLPSAKRAFYQIESPDLVSWNAIIAALA-NSDVNEAIYFFCQMIHMGLM 380

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           P+ +T  +LL AC S   L +G  +H++ IK  L+    V  +L+ MY KC+ +  +F V
Sbjct: 381 PDDITFLNLLCACGSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNV 440

Query: 371 FARTSKKKT-VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           F   S+    V WNAIL+ C  +    +A  LF+ ML    +P++ T+ ++L   A L  
Sbjct: 441 FKDISENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAELVS 500

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L+    +HC+ ++ G +  V VS  LID+Y+KCG L+ A  +F     ++ DIV WS +I
Sbjct: 501 LEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGLLKHARYVFDST--QNPDIVSWSSLI 558

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
            GY   G G+ A++LF+ M   GVQPNEVT+   L ACSH GL++EG  L+N M      
Sbjct: 559 VGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSACSHIGLVEEGWHLYNTMEIELGI 618

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
               +H +C+VDLL RAG L EA + I+     P   +W  LL +C  HGNV++ E AA+
Sbjct: 619 PPTREHVSCMVDLLARAGCLYEAENFIKKTGFDPDITMWKTLLASCKTHGNVDIAERAAE 678

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            + +L+P N    VLLS ++++   WK+   +R++M + G++K P  S IEV++
Sbjct: 679 NILKLDPSNSAALVLLSNIHASAGNWKEVARLRNLMKQMGVQKVPGQSWIEVKD 732



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 181/609 (29%), Positives = 285/609 (46%), Gaps = 45/609 (7%)

Query: 30  AGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           +GTK   A  I  G  +  ++S    AYG   +      E+S       N+ + +  +  
Sbjct: 8   SGTKTRQA-PIHIGSCWNRIQS--CDAYGESYDTNYHGGELST------NSYINLMCKQQ 58

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              ++L  F   L+      +  TY  +I ACT++   K G  +H  +L +    D  + 
Sbjct: 59  HYREALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLKYGKRIHDHILKSNCQPDLVLQ 118

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N ++ MY   G +K ARK FD M   SVVSW  +ISGY +N    +A++++  ML+SG  
Sbjct: 119 NHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQMLRSGYF 178

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PD  +  S++ AC    +I++G  +H  V       ++ A NAL+ MY K G +  A  V
Sbjct: 179 PDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDV 238

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV-RPNSLTIGSLLSACSSLYY 328
           F  +S +D+++W SMI G+   G    AL LF+ M  +GV +PN    GS+ SAC SL  
Sbjct: 239 FTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSLLK 298

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
            + GR +     K  L   V    +L DMYAK   +  + + F +      V WNAI+A 
Sbjct: 299 PEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWNAIIAA 358

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            + N    +A+  F QM+   + P+D T  +LL A      L Q M IH Y+I+ G   V
Sbjct: 359 -LANSDVNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIHSYIIKMGLDKV 417

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             V   L+ +Y+KC +L  A  +F +I  ++ ++V W+ I++    H     A  LFK M
Sbjct: 418 AAVCNSLLTMYTKCSNLHDAFNVFKDIS-ENGNLVSWNAILSACSQHKQPGEAFRLFKLM 476

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEG---------------LDLFNFMLENHQTCSRA 553
           + S  +P+ +T T+ L  C+    L+ G               + + N +++ +  C   
Sbjct: 477 LFSENKPDNITITTILGTCAELVSLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGLL 536

Query: 554 DHYTCIVD-------------LLGRA--GRLDEAYDLIRTMP---LKPTHAVWGALLGAC 595
            H   + D             ++G A  G   EA +L R M    ++P    +  +L AC
Sbjct: 537 KHARYVFDSTQNPDIVSWSSLIVGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSAC 596

Query: 596 VIHGNVELG 604
              G VE G
Sbjct: 597 SHIGLVEEG 605


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/661 (34%), Positives = 355/661 (53%), Gaps = 9/661 (1%)

Query: 8   TLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVR--- 64
           TLP        L+Q Y   +S+   K LHA II S     ++ +SLV  Y     +R   
Sbjct: 2   TLPSNRSFFTALLQ-YTHNRSLQKGKALHAQIIKSSSSCVYIANSLVNLYAKCQRLREAK 60

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDS--LKMFLGMLRLGEYNPDNYTYPIVIKACT 122
            +F+ +  +    +N ++  Y+Q+G S  S  +++F  M R     P+ +T+  V  A +
Sbjct: 61  FVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRM-RAENTAPNAHTFAGVFTAAS 119

Query: 123 DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT 182
            L     G   H   +      D FVG+ L+ MY   G    ARKVFD M E + VSW T
Sbjct: 120 TLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWAT 179

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           +ISGY     A EAL +F  M +     +     SVL A    + +  G+ IH +     
Sbjct: 180 MISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNG 239

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
           L   ++  NALV MY KCGS+++A   F+  S+++ +TW++MI GYA +GD   AL LF 
Sbjct: 240 LLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFS 299

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            M   G+RP+  T   +++ACS L     G+ +H + +K   E ++ V TAL+DMYAKC+
Sbjct: 300 SMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCS 359

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            +  + + F    +   V W +++ G V NG    A+ L+ +M +E + PN+ T+ S+L 
Sbjct: 360 SIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLK 419

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A + LA L+Q   IH   ++YGF   V + + L  +Y+KCG L+    +F  +P   +D+
Sbjct: 420 ACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPA--RDV 477

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
           + W+ +I+G   +G G+ A+ LF+EM   G +P+ VTF + L ACSH GL++ G   F  
Sbjct: 478 ISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRM 537

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           M +      R +HY C+VD+L RAG+L EA +   +  +     +W  +LGAC  + N E
Sbjct: 538 MFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYE 597

Query: 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           LG  A + L EL  +    YVLLS +YSA+ RW+D E VR +M  +G+ K P  S IE++
Sbjct: 598 LGAYAGEKLMELGSQESSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEPGCSWIELK 657

Query: 663 N 663
           +
Sbjct: 658 S 658


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/632 (35%), Positives = 356/632 (56%), Gaps = 11/632 (1%)

Query: 34  QLHAFIITSGPLFTHLRSSLVRAY----GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           +LHA  +  G L      + + A+    G   + R +FDEM ER    +N+++  +  NG
Sbjct: 140 ELHASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNG 199

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPI-VIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
             HD+ +  + M+R G   P N    + V+ AC      K G+++H   +  G +    +
Sbjct: 200 MFHDARRALVSMMRSG--FPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNL 257

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+ MY  FG+V+A+ +VFD M E + VSWN+ I  +    +  + L +F  M +  V
Sbjct: 258 ANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNV 317

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P   ++ S+LPA   L   ++GR +H       +  +I   N+LVDMY K GS+ +A  
Sbjct: 318 MPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKAST 377

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +F++M +R+VV+W +MI     NG    A  L   MQ  G  PNS+T+ ++L AC+ +  
Sbjct: 378 IFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMAS 437

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           LK G+ +HAW+I++ L  ++ +  ALIDMY+KC  + L+  +F R S+K  V +N ++ G
Sbjct: 438 LKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFER-SEKDDVSYNTLILG 496

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
              +    +++ LF+QM    ++ +  +    L A   L+  +    IHC L+R      
Sbjct: 497 YSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGH 556

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             +S  L+D+Y+K G L +A KIF++I    KD+  W+ +I GYGMHG  + A  LF+ M
Sbjct: 557 PFLSNSLLDLYTKGGMLVTASKIFNKI--TKKDVASWNTMILGYGMHGQIDIAFELFELM 614

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
              G+  + V++ + L ACSHGGL+D+G   F+ M+  +    +  HY C+VDLLGRAG+
Sbjct: 615 KGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQM-HYACMVDLLGRAGQ 673

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           L +  ++IR MP      VWGALLGAC IHGN+EL + AA+ LFEL+PE+ G Y L+  +
Sbjct: 674 LSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINM 733

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           Y+   RW +A  +R +M  + ++K PA+S ++
Sbjct: 734 YAETGRWNEANKIRKLMKSRKVQKNPAYSWVQ 765



 Score =  274 bits (701), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 193/595 (32%), Positives = 300/595 (50%), Gaps = 27/595 (4%)

Query: 33  KQLHAFIITSGPLFTHL--RSSLVRAYGHVSNV---RILFDE--MSERSSFLYNTVMKMY 85
           ++ HA  + SG L T L    +L+ +Y  +S++   R++     +  RS+FL+N++ +  
Sbjct: 33  RRAHAASLVSGALATSLPLAGALLLSYAALSDLASARLVLRHHPLRLRSAFLWNSLSRAL 92

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW--RKLGIALHGRVLITGFD 143
           +      ++L+++  MLR     PD+ T+P  + A           G+ LH   L  G  
Sbjct: 93  SSASLPSEALRVYNLMLR-SAVRPDDRTFPFALHAAAAAVASAEDKGLELHASALRRGHL 151

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
            D F GN L+A Y   G+   AR+VFD M E  VVSWN+L+S +  N    +A      M
Sbjct: 152 ADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSM 211

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
           ++SG   + AS+VSV+PACG  +E + G  IH L     L   +   NALVDMY K G V
Sbjct: 212 MRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDV 271

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
             +  VFD M E++ V+W S I  +   G   + L +F+ M    V P S+T+ SLL A 
Sbjct: 272 EASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPAL 331

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
             L     GR +H ++IK+ ++ ++ V  +L+DMYAK   ++ +  +F +   +  V WN
Sbjct: 332 VELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWN 391

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           A++A  V NG   +A  L   M      PN  TL ++LPA A +A L+    IH + IR 
Sbjct: 392 AMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRR 451

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
           G +  + +S  LID+YSKCG L  A  IF      +KD V ++ +I GY        ++ 
Sbjct: 452 GLMFDLFISNALIDMYSKCGQLSLARNIFER---SEKDDVSYNTLILGYSQSPWCFESLL 508

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD----LFNFMLENHQTCSRADHYTCI 559
           LFK+M   G+  + V+F  AL AC++  +   G +    L   +L  H   S +     +
Sbjct: 509 LFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSNS-----L 563

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           +DL  + G L  A  +   +  K   A W  ++    +HG +++    A  LFEL
Sbjct: 564 LDLYTKGGMLVTASKIFNKITKKDV-ASWNTMILGYGMHGQIDI----AFELFEL 613


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 230/660 (34%), Positives = 354/660 (53%), Gaps = 20/660 (3%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSG-------PLFTHLRSSLVRAYGHVSNVRI--- 65
           +I +++  A   SI   K +H  ++ S         LF H        Y   S  R    
Sbjct: 67  LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHA----AHVYSKCSEFRAACG 122

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FDEM +R+ F +  ++    ++G   D  K F  ML  G   PD + Y  +I++C  L 
Sbjct: 123 VFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGIL-PDKFAYSAIIQSCIGLD 181

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             +LG  +H ++++ GF    FV   L+ MY   G ++ +  VF+ M EH+ VSWN +IS
Sbjct: 182 SLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMIS 241

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           G   N    EA  +F  M      P+  ++VSV  A G L ++ MG+ +    +   +  
Sbjct: 242 GCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEG 301

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT--WTSMINGYALNGDVRNALGLFQL 303
           N+    AL+DMY KCGS+++AR VFD       V   W +MI+GY+ +G  + AL L+  
Sbjct: 302 NVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQ 361

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI-VETALIDMYAKCN 362
           M   G+  +  T  S+ +A ++   L+ GR +H   +K  L+  V+ V  A+ D Y+KC 
Sbjct: 362 MCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCG 421

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            ++   +VF R  ++  V W  ++     + L  +A+  F  M  E   PN  T +S+L 
Sbjct: 422 FLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLI 481

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           + A L  L+    +H  L + G  +   + + LID+Y+KCGS+  A K+F +I   + DI
Sbjct: 482 SCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKI--SNPDI 539

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
           V W+ II+GY  HG  E A+ LF+ M  SG++ N VT    L ACSHGG+++EGL  F  
Sbjct: 540 VSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQ 599

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           M + +      +HY CI+DLLGR GRLD+A + IR MP++P   VW  LLG C +HGNVE
Sbjct: 600 MEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVE 659

Query: 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           LGE+AA+ +  + PE    YVLLS  Y     ++D  ++R+VM ++G++K P +S I V+
Sbjct: 660 LGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVK 719


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/661 (34%), Positives = 358/661 (54%), Gaps = 16/661 (2%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILF 67
            ++  + ++   A+  ++   K++H+  + +G  L   + ++LV  Y   G + + R++F
Sbjct: 319 NSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVF 378

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKA-----CT 122
           D M+ER  F +  ++   AQ+G   ++  +FL M R G   P+  TY  ++ A      +
Sbjct: 379 DGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCL-PNLTTYLSILNASAIASTS 437

Query: 123 DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT 182
            L W K+   +H      GF  D  +GN LI MY   G +  AR VFD M +  V+SWN 
Sbjct: 438 ALEWVKV---VHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNA 494

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           ++ G  +N    EA  VF  M + G+ PD  + +S+L   G    +E    +H+      
Sbjct: 495 MMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETG 554

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
           L  +    +A + MY++CGS+++ARL+FD++S R V TW +MI G A     R AL LF 
Sbjct: 555 LISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFL 614

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            MQ EG  P++ T  ++LSA      L+  + +H+      L  ++ V  AL+  Y+KC 
Sbjct: 615 QMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCG 673

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            VK + QVF    ++    W  ++ G   +G    A   F QML E + P+  T  S+L 
Sbjct: 674 NVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILS 733

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A A    L+    +H + +  G +S + V   L+ +Y+KCGS++ A  +F ++   ++D+
Sbjct: 734 ACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMV--ERDV 791

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
             W+V+I G   HG G  A+  F +M   G +PN  ++ + L ACSH GL+DEG   F  
Sbjct: 792 FSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLS 851

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           M +++      +HYTC+VDLLGRAG L+EA   I  MP++P  A WGALLGACV +GN+E
Sbjct: 852 MTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLE 911

Query: 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           + E AAK   +L+P++   YVLLS +Y+A  +W+    VR +M  KG+RK P  S IEV 
Sbjct: 912 MAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVD 971

Query: 663 N 663
           N
Sbjct: 972 N 972



 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 157/516 (30%), Positives = 265/516 (51%), Gaps = 9/516 (1%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSE 72
           + ++Q+    + I   KQ+H  II SG     ++ + L+R Y   G +   R +FD++ +
Sbjct: 122 VNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLK 181

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           ++ +++ T++  YA+ G + D+++++  M R     P+  TY  ++KAC      K G  
Sbjct: 182 KNIYIWTTMIGGYAEYGHAEDAMRVYDKM-RQECGQPNEITYLSILKACCCPVNLKWGKK 240

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H  ++ +GF  D  V   L+ MY+  G ++ A+ +FD M E +V+SW  +I G      
Sbjct: 241 IHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGR 300

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            +EA  +F  M + G  P+  + VS+L A      +E  + +H       L  ++   NA
Sbjct: 301 GQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNA 360

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           LV MY K GS+++AR+VFD M+ERD+ +WT MI G A +G  + A  LF  MQ  G  PN
Sbjct: 361 LVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPN 420

Query: 313 SLTIGSLL--SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
             T  S+L  SA +S   L+  + +H    +     ++ +  ALI MYAKC  +  +  V
Sbjct: 421 LTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLV 480

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F     +  + WNA++ G   NG   +A  +F QM  E + P+  T  SLL  +     L
Sbjct: 481 FDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDAL 540

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
           +    +H + +  G +S   V +  I +Y +CGS++ A  +F ++ +  + +  W+ +I 
Sbjct: 541 EWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSV--RHVTTWNAMIG 598

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
           G      G  A+SLF +M + G  P+  TF + L A
Sbjct: 599 GAAQQRCGREALSLFLQMQREGFIPDATTFINILSA 634



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 146/493 (29%), Positives = 262/493 (53%), Gaps = 18/493 (3%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           D+++Y  +++ C       L   +H  ++ +G + + +V N L+ +Y+  G ++ AR+VF
Sbjct: 117 DSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVF 176

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           D + + ++  W T+I GY +  +A++A+ V+D M +   +P+  + +S+L AC     ++
Sbjct: 177 DKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLK 236

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
            G+ IH  +       ++    ALV+MYVKCGS+ +A+L+FD+M ER+V++WT MI G A
Sbjct: 237 WGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLA 296

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
             G  + A  LF  MQ EG  PNS T  S+L+A +S   L+  + +H+  +   L  ++ 
Sbjct: 297 HYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLR 356

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           V  AL+ MYAK   +  +  VF   +++    W  ++ G   +G  ++A  LF QM    
Sbjct: 357 VGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNG 416

Query: 410 VEPNDATLNSLLPAYAILAD--LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
             PN  T  S+L A AI +   L+    +H +    GF+S + +   LI +Y+KCGS++ 
Sbjct: 417 CLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDD 476

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A  +F  +   D+D++ W+ ++ G   +G G  A ++F +M Q G+ P+  T+ S L+  
Sbjct: 477 ARLVFDGMC--DRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN-- 532

Query: 528 SHGGLLDEGLDLFNFMLENH----QTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPL 581
           +HG       D   ++ E H    +T   +D    +  + +  R G +D+A  L   + +
Sbjct: 533 THG-----STDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSV 587

Query: 582 KPTHAVWGALLGA 594
           +     W A++G 
Sbjct: 588 RHV-TTWNAMIGG 599



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 185/334 (55%), Gaps = 2/334 (0%)

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
           AK+A+ +    ++ G+  D  S V++L  C   ++I + + +H  +    + +N+   N 
Sbjct: 99  AKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANK 158

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+ +Y++CG +  AR VFD++ ++++  WT+MI GYA  G   +A+ ++  M+ E  +PN
Sbjct: 159 LLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPN 218

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            +T  S+L AC     LK G+ +HA  I+   + +V VETAL++MY KC  ++ +  +F 
Sbjct: 219 EITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFD 278

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           +  ++  + W  ++ G  H G  ++A  LF QM  E   PN  T  S+L A A    L+ 
Sbjct: 279 KMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEW 338

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              +H + +  G    + V   L+ +Y+K GS++ A  +F    + ++DI  W+V+I G 
Sbjct: 339 VKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFD--GMTERDIFSWTVMIGGL 396

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
             HG G+ A SLF +M ++G  PN  T+ S L+A
Sbjct: 397 AQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNA 430


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/661 (34%), Positives = 361/661 (54%), Gaps = 16/661 (2%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILF 67
            ++  + ++   A+  ++   K++H+  + +G  L   + ++LV  Y   G + + R++F
Sbjct: 130 NSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVF 189

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT----- 122
           D M ER  F +  ++   AQ+G   ++  +FL M R G   P+  TY  ++ A       
Sbjct: 190 DGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMER-GGCLPNLTTYLSILNASAITSTG 248

Query: 123 DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT 182
            L W K    +H      GF  D  VGN LI MY   G +  AR VFD M +  V+SWN 
Sbjct: 249 ALEWVK---EVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNA 305

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           +I G  +N    EA  +F  M + G  PD  + +S+L         E  + +H+      
Sbjct: 306 MIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVG 365

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
           L  ++   +A V MY++CGS+++A+L+FD+++ R+V TW +MI G A     R AL LF 
Sbjct: 366 LVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFL 425

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            M+ EG  P++ T  ++LSA      L+  + +H++ I   L  ++ V  AL+ MYAKC 
Sbjct: 426 QMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCG 484

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
               + QVF    ++    W  +++G   +G   +A  LF QML E + P+  T  S+L 
Sbjct: 485 NTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILS 544

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A A    L+    +H + +  G +S + V   L+ +Y+KCGS++ A ++F ++   ++D+
Sbjct: 545 ACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDML--ERDV 602

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
             W+V+I G   HG G  A+ LF +M   G +PN  +F + L ACSH GL+DEG   F  
Sbjct: 603 YSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLS 662

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           + +++      +HYTC+VDLLGRAG+L+EA   I  MP++P  A WGALLGACV +GN+E
Sbjct: 663 LTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLE 722

Query: 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           + E AAK   +L+P++   YVLLS +Y+A   W+    VR +M  +G+RK P  S IEV 
Sbjct: 723 MAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVD 782

Query: 663 N 663
           N
Sbjct: 783 N 783



 Score =  270 bits (689), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 182/619 (29%), Positives = 300/619 (48%), Gaps = 49/619 (7%)

Query: 28  SIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMK 83
           S+   K++HA II SG      + ++LV  Y   G + + +++FD+M ER+   +  ++ 
Sbjct: 45  SLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIG 104

Query: 84  MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD---LAWRKLGIALHGRVLIT 140
             A  G   ++   FL M R G + P++YTY  ++ A      L W K    +H   +  
Sbjct: 105 GLAHYGRGQEAFHRFLQMQREG-FIPNSYTYVSILNANASAGALEWVK---EVHSHAVNA 160

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           G  +D  VGN L+ MY   G +  AR VFD M E  + SW  +I G  ++   +EA  +F
Sbjct: 161 GLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLF 220

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKE--IEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
             M + G  P+  + +S+L A        +E  + +H+         ++   NAL+ MY 
Sbjct: 221 LQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYA 280

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           KCGS+++ARLVFD M +RDV++W +MI G A NG    A  +F  MQ EG  P+S T  S
Sbjct: 281 KCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLS 340

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           LL+   S    +  + +H   ++  L  ++ V +A + MY +C  +  +  +F + + + 
Sbjct: 341 LLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRN 400

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
              WNA++ G       R+A+ LF QM  E   P+  T  ++L A      L+    +H 
Sbjct: 401 VTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHS 460

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           Y I  G +  + V   L+ +Y+KCG+   A ++F ++   ++++  W+V+I+G   HG G
Sbjct: 461 YAIDAGLVD-LRVGNALVHMYAKCGNTMYAKQVFDDMV--ERNVTTWTVMISGLAQHGCG 517

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD---------------EGLDLFNFM 543
             A SLF +M++ G+ P+  T+ S L AC+  G L+                 L + N +
Sbjct: 518 HEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNAL 577

Query: 544 LENHQTCSRADH---------------YTCIVDLLGRAGRLDEAYDLIRTMPL---KPTH 585
           +  +  C   D                +T ++  L + GR  +A DL   M L   KP  
Sbjct: 578 VHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNG 637

Query: 586 AVWGALLGACVIHGNVELG 604
             + A+L AC   G V+ G
Sbjct: 638 YSFVAVLSACSHAGLVDEG 656



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 141/444 (31%), Positives = 224/444 (50%), Gaps = 5/444 (1%)

Query: 85  YAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDM 144
           YA+ G + D++K++  M R G   P+  TY  ++KAC      K G  +H  ++ +GF  
Sbjct: 5   YAEYGYAEDAMKVYSQMRREGG-QPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQS 63

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           D  V   L+ MY+  G +  A+ +FD M E +V+SW  +I G       +EA   F  M 
Sbjct: 64  DVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQ 123

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
           + G  P+  + VS+L A      +E  + +H       L  ++   NALV MY K GS++
Sbjct: 124 REGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSID 183

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL--SA 322
           +AR+VFD M ERD+ +WT MI G A +G  + A  LF  M+  G  PN  T  S+L  SA
Sbjct: 184 DARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASA 243

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
            +S   L+  + +H    K     ++ V  ALI MYAKC  +  +  VF     +  + W
Sbjct: 244 ITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISW 303

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           NA++ G   NG   +A  +F +M  E   P+  T  SLL  +      +    +H + + 
Sbjct: 304 NAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVE 363

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
            G +S + V +  + +Y +CGS++ A  IF ++ +  +++  W+ +I G      G  A+
Sbjct: 364 VGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAV--RNVTTWNAMIGGVAQQKCGREAL 421

Query: 503 SLFKEMVQSGVQPNEVTFTSALHA 526
           SLF +M + G  P+  TF + L A
Sbjct: 422 SLFLQMRREGFFPDATTFVNILSA 445



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 115/345 (33%), Positives = 190/345 (55%), Gaps = 4/345 (1%)

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           +I GY +  YA++A+ V+  M + G +P+  + +S+L AC     ++ G+ IH  +    
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
              ++    ALV+MYVKCGS+++A+L+FD+M ER+V++WT MI G A  G  + A   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            MQ EG  PNS T  S+L+A +S   L+  + +H+  +   L  ++ V  AL+ MYAK  
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            +  +  VF    ++    W  ++ G   +G  ++A  LF QM      PN  T  S+L 
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 423 AYAILAD--LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           A AI +   L+    +H +  + GF+S + V   LI +Y+KCGS++ A  +F  +   D+
Sbjct: 241 ASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMC--DR 298

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
           D++ W+ +I G   +G G  A ++F +M Q G  P+  T+ S L+
Sbjct: 299 DVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLN 343


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 228/629 (36%), Positives = 350/629 (55%), Gaps = 22/629 (3%)

Query: 56  AYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG--ASHDSLKMFLGMLRLGEYNPDNYT 113
           A GH+S    LFD++       YN +++ Y+ +   A+ D L ++  MLR     P+NYT
Sbjct: 69  ASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLR-HRVAPNNYT 127

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           +P  +KAC+ LA    G A+H   +  G   D FV   L+ MY+    +  A  +F  M 
Sbjct: 128 FPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMP 187

Query: 174 EHSVVSWNTLISGYFKNAYAKEAL--VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
              +V+WN +++GY  +     A+  ++   M    + P+ +++V++LP       +  G
Sbjct: 188 ARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQG 247

Query: 232 RMIHELV----------AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTW 281
             +H             +  +L   +    AL+DMY KCGS+  AR VFD M  R+ VTW
Sbjct: 248 TSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTW 307

Query: 282 TSMINGYALNGDVRNALGLFQLMQFEGV---RPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           +++I G+ L   +  A  LF+ M  +G+    P S  I S L AC+SL +L+ G  LHA 
Sbjct: 308 SALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRACASLDHLRMGEQLHAL 365

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
             K  +  ++    +L+ MYAK  L+  +  +F   + K TV ++A+++G V NG A +A
Sbjct: 366 LAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEA 425

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
             +F++M    VEP+ AT+ SL+PA + LA LQ     H  +I  G  S   +   LID+
Sbjct: 426 FLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDM 485

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           Y+KCG ++ + ++F+ +P   +DIV W+ +IAGYG+HG G+ A +LF EM   G  P+ V
Sbjct: 486 YAKCGRIDLSRQVFNMMP--SRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGV 543

Query: 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578
           TF   L ACSH GL+ EG   F+ M   +    R +HY C+VDLL R G LDEAY+ I++
Sbjct: 544 TFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQS 603

Query: 579 MPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDA 638
           MPL+    VW ALLGAC ++ N++LG+  ++ + EL PE  GN+VLLS +YSA  R+ +A
Sbjct: 604 MPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEA 663

Query: 639 ENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
             VR +   +G +K+P  S IE+   L A
Sbjct: 664 AEVRIIQKVQGFKKSPGCSWIEINGSLHA 692



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 130/262 (49%), Gaps = 9/262 (3%)

Query: 33  KQLHAFIITSGPLFTHLRS--SLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           +QLHA +  SG +   L +  SL+  Y   G +     LFDEM+ + +  Y+ ++  Y Q
Sbjct: 360 EQLHALLAKSG-VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQ 418

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NG + ++  +F  M +     PD  T   +I AC+ LA  + G   HG V+I G   +T 
Sbjct: 419 NGRAEEAFLVFKKM-QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS 477

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           + N LI MY   G +  +R+VF+ M    +VSWNT+I+GY  +   KEA  +F  M   G
Sbjct: 478 ICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLG 537

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRM-IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
             PD  + + +L AC +   +  G+   H +  G  L   +  +  +VD+  + G ++EA
Sbjct: 538 FPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEA 597

Query: 267 RLVFDRMSER-DVVTWTSMING 287
                 M  R DV  W +++  
Sbjct: 598 YEFIQSMPLRADVRVWVALLGA 619


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/639 (33%), Positives = 351/639 (54%), Gaps = 7/639 (1%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAYGHVSN---VRILFDEMSERSSFLYNTVMKMYAQN 88
           +QLH  ++  G  L T++ ++LV  Y  + N      +F+ M +R    YN+++   +Q 
Sbjct: 291 EQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQ 350

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G S  +L++F  M  L    PD  T   ++ AC+ +    +G   H   +  G   D  +
Sbjct: 351 GYSDKALELFKKMC-LDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIIL 409

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
              L+ +Y+   ++K A + F +    +VV WN ++  Y       E+  +F  M   G+
Sbjct: 410 EGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGI 469

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           EP+  +  S+L  C  L+ +++G  IH  V       N+   + L+DMY K G ++ A  
Sbjct: 470 EPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALK 529

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +F R+ E+DVV+WT+MI GYA +     AL LF+ MQ +G+  +++   S +SAC+ +  
Sbjct: 530 IFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQA 589

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L +G+ +HA         ++ V  AL+ +YA+C  V+ ++  F +   K  + WN++++G
Sbjct: 590 LNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISG 649

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
              +G   +A+ LF QM     E N  T    + A A +A+++    IH  +I+ G  S 
Sbjct: 650 FAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSE 709

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
            EVS  LI +Y+KCG+++ A + F E+P  +K+ + W+ ++ GY  HGHG  A+SLF++M
Sbjct: 710 TEVSNVLITLYAKCGNIDDAERQFFEMP--EKNEISWNAMLTGYSQHGHGFKALSLFEDM 767

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
            Q GV PN VTF   L ACSH GL+DEG+  F  M E H    + +HY C+VDLLGR+G 
Sbjct: 768 KQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGL 827

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           L  A   +  MP++P   V   LL AC++H N+++GE AA  L ELEP++   YVLLS +
Sbjct: 828 LSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNM 887

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           Y+   +W   +  R +M ++G++K P  S IEV N + A
Sbjct: 888 YAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHA 926



 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 171/574 (29%), Positives = 291/574 (50%), Gaps = 13/574 (2%)

Query: 33  KQLHAFIITSG---PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYA 86
           +++HA  IT G    LF  + + L+  Y   G +++ + +FD + +R S  +  ++   +
Sbjct: 190 EKIHARTITHGYENSLF--VCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLS 247

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           Q+G   +++ +F  M   G Y P  Y +  V+ ACT + + K+G  LHG VL  GF ++T
Sbjct: 248 QSGCEEEAVLLFCQMHTSGVY-PTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLET 306

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
           +V N L+ +Y   G    A +VF+AM +   VS+N+LISG  +  Y+ +AL +F  M   
Sbjct: 307 YVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLD 366

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
            ++PDC +V S+L AC  +  + +G+  H       +  +I    AL+D+YVKC  +  A
Sbjct: 367 CLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTA 426

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
              F      +VV W  M+  Y L  ++  +  +F  MQ EG+ PN  T  S+L  CSSL
Sbjct: 427 HEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSL 486

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             +  G  +H   +K   +  V V + LIDMYAK   +  + ++F R  +K  V W A++
Sbjct: 487 RAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMI 546

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           AG   +    +A+ LF++M  + +  ++    S + A A +  L Q   IH      G+ 
Sbjct: 547 AGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYS 606

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
             + V   L+ +Y++CG +  A+  F +I  KD   + W+ +I+G+   GH E A+SLF 
Sbjct: 607 DDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDN--ISWNSLISGFAQSGHCEEALSLFS 664

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           +M ++G + N  TF  A+ A ++   +  G  +   +++     S  +    ++ L  + 
Sbjct: 665 QMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHD-SETEVSNVLITLYAKC 723

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           G +D+A      MP K     W A+L     HG+
Sbjct: 724 GNIDDAERQFFEMPEK-NEISWNAMLTGYSQHGH 756



 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 177/556 (31%), Positives = 292/556 (52%), Gaps = 22/556 (3%)

Query: 56  AYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
           A+G +     +FDEM  R    +N V+  +     +   L +F  ML+  +  PD  TY 
Sbjct: 115 AFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQ-EKVKPDERTYA 173

Query: 116 IVIKAC--TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
            V++ C   D+ +  +   +H R +  G++   FV N LI +Y   G + +A+KVFD + 
Sbjct: 174 GVLRGCGGGDVPFHCVE-KIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQ 232

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
           +   VSW  ++SG  ++   +EA+++F  M  SGV P      SVL AC  ++  ++G  
Sbjct: 233 KRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQ 292

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           +H LV            NALV +Y + G+   A  VF+ M +RD V++ S+I+G +  G 
Sbjct: 293 LHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGY 352

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              AL LF+ M  + ++P+ +T+ SLLSACSS+  L  G+  H++ IK  +  ++I+E A
Sbjct: 353 SDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGA 412

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA--GCVHNGLARKAVELFRQMLVEVVE 411
           L+D+Y KC+ +K + + F  T  +  V WN +L   G + N    ++ ++F QM +E +E
Sbjct: 413 LLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDN--LNESFKIFTQMQMEGIE 470

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           PN  T  S+L   + L  +     IH  +++ GF   V VS+ LID+Y+K G L+ A KI
Sbjct: 471 PNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKI 530

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F    +K+KD+V W+ +IAGY  H     A++LFKEM   G+  + + F SA+ AC+   
Sbjct: 531 FRR--LKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQ 588

Query: 532 LLDEGLDLFNFMLENHQTC--SRADHYT---CIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
            L++G  +      + Q C    +D  +    +V L  R G++ +AY     +     + 
Sbjct: 589 ALNQGQQI------HAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKI-FSKDNI 641

Query: 587 VWGALLGACVIHGNVE 602
            W +L+      G+ E
Sbjct: 642 SWNSLISGFAQSGHCE 657



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 148/548 (27%), Positives = 267/548 (48%), Gaps = 14/548 (2%)

Query: 54  VRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYT 113
           ++ +  V ++   F +  E     +NT +     N     +   FL ++       ++ T
Sbjct: 16  IKQFRPVVSIFFFFQKFLE-----HNTALSYAYSNDEGEANGINFLHLMEERGVRANSQT 70

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           Y  ++  C    W   G  LHG++L  GF  +  +   L+ +Y+ FG++  A  VFD M 
Sbjct: 71  YLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMP 130

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK-EIEMGR 232
              +  WN ++  +     A   L +F  ML+  V+PD  +   VL  CG          
Sbjct: 131 VRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVE 190

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            IH          ++   N L+D+Y K G +N A+ VFD + +RD V+W +M++G + +G
Sbjct: 191 KIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSG 250

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
               A+ LF  M   GV P      S+LSAC+ + + K G  LH   +KQ    E  V  
Sbjct: 251 CEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCN 310

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           AL+ +Y++      + QVF    ++  V +N++++G    G + KA+ELF++M ++ ++P
Sbjct: 311 ALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKP 370

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           +  T+ SLL A + +  L      H Y I+ G  S + +   L+D+Y KC  +++AH+ F
Sbjct: 371 DCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFF 430

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
             +  + +++V+W+V++  YG+  +   +  +F +M   G++PN+ T+ S L  CS    
Sbjct: 431 --LSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRA 488

Query: 533 LDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           +D G  +   +L   +T  + + Y  + ++D+  + G+LD A  + R +  K     W A
Sbjct: 489 VDLGEQIHTQVL---KTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDV-VSWTA 544

Query: 591 LLGACVIH 598
           ++     H
Sbjct: 545 MIAGYAQH 552


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/652 (33%), Positives = 360/652 (55%), Gaps = 11/652 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG--PLFTHLRSSLVRAYGHVSNV---RILFDEMSER 73
           L+   ++ +S+   +++H  ++T    P    L++ ++  YG   ++   R +FD M  +
Sbjct: 104 LINACSSLRSLEHGRKIHRHMLTCNYQPDMI-LQNHILSMYGKCGSLKEARNMFDSMPLK 162

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           +   + +++  Y++ G   +++ +++ MLR G   PD++T+  ++K+C+ L   KL   L
Sbjct: 163 NVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHI-PDHFTFGSIVKSCSGLDDFKLARQL 221

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H  VL + F  D    N LI+MY  F ++  A  VF  +    ++SW ++I+G+ +  Y 
Sbjct: 222 HAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLGYE 281

Query: 194 KEALVVFDWMLKSGV-EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            EAL  F  ML   V +P+     S   AC  L E + GR IH L     LG ++ A  +
Sbjct: 282 LEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCS 341

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L DMY KCG +  AR VF  + + D+V W ++I G+A   + + +   F  M+  G+ PN
Sbjct: 342 LCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPN 401

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            +T+ SLL ACS    L  G  +H++ +K     ++ V  +L+ MY+KC+ +  + QVF 
Sbjct: 402 DVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSNLNDALQVFE 461

Query: 373 RT-SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
              +K   V WN +L  C+    A + + L + M    ++P+  TL ++L +   +A  +
Sbjct: 462 DIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYE 521

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               IHC++++ G    + VS  LI++Y+KCGSLE A K+F  I   + DI+ WS +I G
Sbjct: 522 VGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSI--GNPDIISWSSLIVG 579

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           Y   G G+ A  LF+ M   GV+PNE+TF   L ACSH G+++EGL L+  M E+++   
Sbjct: 580 YAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDYRISP 639

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
             +H +C+VDLL RAG LD A D I+ MP  P   VW  LL AC +HGN+E+G+ AA+ +
Sbjct: 640 TKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDVVVWKTLLAACKVHGNLEVGKRAAENV 699

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            +++P N    V+L  ++++   WKD   +R  M    + K P  S IE+++
Sbjct: 700 LKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIKD 751



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 166/546 (30%), Positives = 264/546 (48%), Gaps = 35/546 (6%)

Query: 93  DSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCL 152
           ++LK F    +       + TY  +I AC+ L   + G  +H  +L   +  D  + N +
Sbjct: 80  EALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHI 139

Query: 153 IAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDC 212
           ++MY   G +K AR +FD+M   +VVSW ++ISGY +      A+ ++  ML+SG  PD 
Sbjct: 140 LSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDH 199

Query: 213 ASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR 272
            +  S++ +C  L + ++ R +H  V     G ++ A NAL+ MY K   + +A  VF R
Sbjct: 200 FTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSR 259

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV-RPNSLTIGSLLSACSSLYYLKR 331
           +  +D+++W SMI G++  G    AL  F+ M  + V +PN    GS  SACS L     
Sbjct: 260 IIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDC 319

Query: 332 GRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVH 391
           GR +H   IK  L  ++    +L DMYAKC  ++ +  VF    K   V WNAI+AG   
Sbjct: 320 GRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFAS 379

Query: 392 NGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEV 451
              A+++   F QM    + PND T+ SLL A +    L   + +H Y+++ GF   + V
Sbjct: 380 VSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPV 439

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
              L+ +YSKC +L  A ++F +I  K  DIV W+ ++            + L K M  S
Sbjct: 440 CNSLLSMYSKCSNLNDALQVFEDIGNK-ADIVSWNTLLTACLQQNQAGEVLRLTKLMFAS 498

Query: 512 GVQPNEVTFTSALHACS-----------HGGLLDEGLDL----FNFMLENHQTCSRADHY 556
            ++P+ VT T+ L +             H  ++  GL+L     N ++  +  C   +  
Sbjct: 499 RIKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECA 558

Query: 557 TCIVDLLG---------------RAGRLDEAYDLIRTMP---LKPTHAVWGALLGACVIH 598
             + D +G               +AG   EA++L RTM    +KP    +  +L AC   
Sbjct: 559 RKMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHI 618

Query: 599 GNVELG 604
           G VE G
Sbjct: 619 GMVEEG 624


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 234/676 (34%), Positives = 362/676 (53%), Gaps = 17/676 (2%)

Query: 4   PSHHTLPKT-THLVIK----LVQQYAATKSIAGTKQLHAFIITSGPLFTH---LRSSLVR 55
           P+   + KT +HL I+    L++     + +   K +H F++ S     H   L + +  
Sbjct: 54  PNSVKVDKTDSHLQIQPLVDLLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAH 113

Query: 56  AYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNY 112
           AY   S++     LFD+MS+R++F +  ++   A+NG   D  + F  M   G + PD +
Sbjct: 114 AYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIF-PDQF 172

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
            Y  +++ C  L   +LG  +H +++I GF   TFV   L+ MY    E++ + KVF+ M
Sbjct: 173 AYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVFNTM 232

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
            E +VVSWN +I+G+  N    +A  +F  M+  GV PD  + + V  A G L+++   +
Sbjct: 233 TEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAK 292

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR--MSERDVVTWTSMINGYAL 290
            +        +  N     AL+DM  KCGS+ EAR +F+   ++ R    W +MI+GY  
Sbjct: 293 EVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLR 352

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE-VI 349
           +G    AL LF  M    +  +  T  S+ +A ++L  L  G+ +HA  IK  LE   V 
Sbjct: 353 SGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVS 412

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           +  A+ + YAKC  ++   +VF R   +  + W +++          KA+E+F  M  E 
Sbjct: 413 ISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEG 472

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           + PN  T +S+L + A L  L+    +H  + + G      + + L+D+Y+KCG L  A 
Sbjct: 473 IAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAK 532

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
           K+F+ I   + D V W+ IIAG+  HG  + A+ LF+ MVQ GV+PN VTF   L ACSH
Sbjct: 533 KVFNRIS--NADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSH 590

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
           GGL++EGL  F  M + +      +HY CIVDLL R G L++A + I  MP++P   VW 
Sbjct: 591 GGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQ 650

Query: 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
            LLGAC +HGNVELGE+AA+ +   + EN   YVLLS  Y     +KD  ++R +M E+G
Sbjct: 651 TLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLSLRHLMKEQG 710

Query: 650 LRKAPAHSLIEVRNIL 665
           ++K P  S I V   L
Sbjct: 711 VKKEPGCSWISVNGTL 726


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/660 (34%), Positives = 354/660 (53%), Gaps = 20/660 (3%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSG-------PLFTHLRSSLVRAYGHVSNVRI--- 65
           +I +++  A   SI   K +H  ++ S         LF H        Y   S  R    
Sbjct: 121 LIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHA----AHVYSKCSEFRAACG 176

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FDEM +R+ F +  ++    ++G   D  K F  ML  G   PD + Y  +I++C  L 
Sbjct: 177 VFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGIL-PDKFAYSAIIQSCIGLD 235

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             +LG  +H ++++ GF    FV   L+ MY   G ++ +  VF+ M EH+ VSWN +IS
Sbjct: 236 SLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMIS 295

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           G   N    EA  +F  M      P+  ++VSV  A G L ++ MG+ +    +   +  
Sbjct: 296 GCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEG 355

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT--WTSMINGYALNGDVRNALGLFQL 303
           N+    AL+DMY KCGS+++AR VFD       V   W +MI+GY+ +G  + AL L+  
Sbjct: 356 NVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQ 415

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI-VETALIDMYAKCN 362
           M   G+  +  T  S+ +A ++   L+ GR +H   +K  L+  V+ V  A+ D Y+KC 
Sbjct: 416 MCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCG 475

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            ++   +VF R  ++  V W  ++     + L  +A+  F  M  E   PN  T +S+L 
Sbjct: 476 FLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLI 535

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           + A L  L+    +H  L + G  +   + + LID+Y+KCGS+  A K+F +I   + DI
Sbjct: 536 SCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKIS--NPDI 593

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
           V W+ II+GY  HG  E A+ LF+ M  SG++ N VT    L ACSHGG+++EGL  F  
Sbjct: 594 VSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQ 653

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           M + +      +HY CI+DLLGR GRLD+A + IR MP++P   VW  LLG C +HGNVE
Sbjct: 654 MEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVE 713

Query: 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           LGE+AA+ +  + PE    YVLLS  Y     ++D  ++R+VM ++G++K P +S I V+
Sbjct: 714 LGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVK 773


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 228/629 (36%), Positives = 350/629 (55%), Gaps = 22/629 (3%)

Query: 56  AYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG--ASHDSLKMFLGMLRLGEYNPDNYT 113
           A GH+S    LFD++       YN +++ Y+ +   A+ D L ++  MLR     P+NYT
Sbjct: 69  ASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLR-HRVAPNNYT 127

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           +P  +KAC+ LA    G A+H   +  G   D FV   L+ MY+    +  A  +F  M 
Sbjct: 128 FPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMP 187

Query: 174 EHSVVSWNTLISGYFKNAYAKEAL--VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
              +V+WN +++GY  +     A+  ++   M    + P+ +++V++LP       +  G
Sbjct: 188 ARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQG 247

Query: 232 RMIHELV----------AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTW 281
             +H             +  +L   +    AL+DMY KCGS+  AR VFD M  R+ VTW
Sbjct: 248 TSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTW 307

Query: 282 TSMINGYALNGDVRNALGLFQLMQFEGV---RPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           +++I G+ L   +  A  LF+ M  +G+    P S  I S L AC+SL +L+ G  LHA 
Sbjct: 308 SALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRACASLDHLRMGEQLHAL 365

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
             K  +  ++    +L+ MYAK  L+  +  +F   + K TV ++A+++G V NG A +A
Sbjct: 366 LAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEA 425

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
             +F++M    VEP+ AT+ SL+PA + LA LQ     H  +I  G  S   +   LID+
Sbjct: 426 FLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDM 485

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           Y+KCG ++ + ++F+ +P   +DIV W+ +IAGYG+HG G+ A +LF EM   G  P+ V
Sbjct: 486 YAKCGRIDLSRQVFNMMP--SRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGV 543

Query: 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578
           TF   L ACSH GL+ EG   F+ M   +    R +HY C+VDLL R G LDEAY+ I++
Sbjct: 544 TFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQS 603

Query: 579 MPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDA 638
           MPL+    VW ALLGAC ++ N++LG+  ++ + EL PE  GN+VLLS +YSA  R+ +A
Sbjct: 604 MPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEA 663

Query: 639 ENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
             VR +   +G +K+P  S IE+   L A
Sbjct: 664 AEVRIIQKVQGFKKSPGCSWIEINGSLHA 692



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 130/262 (49%), Gaps = 9/262 (3%)

Query: 33  KQLHAFIITSGPLFTHLRS--SLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           +QLHA +  SG +   L +  SL+  Y   G +     LFDEM+ + +  Y+ ++  Y Q
Sbjct: 360 EQLHALLAKSG-VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQ 418

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NG + ++  +F  M +     PD  T   +I AC+ LA  + G   HG V+I G   +T 
Sbjct: 419 NGRAEEAFLVFKKM-QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS 477

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           + N LI MY   G +  +R+VF+ M    +VSWNT+I+GY  +   KEA  +F  M   G
Sbjct: 478 ICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLG 537

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRM-IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
             PD  + + +L AC +   +  G+   H +  G  L   +  +  +VD+  + G ++EA
Sbjct: 538 FPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEA 597

Query: 267 RLVFDRMSER-DVVTWTSMING 287
                 M  R DV  W +++  
Sbjct: 598 YEFIQSMPLRADVRVWVALLGA 619


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/561 (38%), Positives = 329/561 (58%), Gaps = 11/561 (1%)

Query: 114 YPIVIKAC-------TDLAWRKLGIALHGRVL-ITGFDMDTFVGNCLIAMYMNFGEVKAA 165
           YP+    C       T+    K G  LH  ++  +  + +T++   L A Y   G +  A
Sbjct: 55  YPLTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQA 114

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
             +FD +   +   WN +I GY  N    ++LV++  ML  G   D  +   VL ACG L
Sbjct: 115 EVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDL 174

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
             +E+GR +H  V    L  +I   N+L+ MY K G +  AR+VFDRM+ERD+ +W +MI
Sbjct: 175 LLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMI 234

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL- 344
           +GYA N D   A  +F LM   G+  +  T+  LLSAC+ L  +K G+ +H + ++ ++ 
Sbjct: 235 SGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIG 294

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
                   +LI+MY  CN +  + ++F R   K TV WN+++ G   NG A +++ LFR+
Sbjct: 295 NYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRR 354

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           M ++   P+  T  ++L A   +A L+  M+IH YL++ GF +   V T L+D+YSKCGS
Sbjct: 355 MALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGS 414

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           L  + ++F E+P  DK +V WS ++AGYG+HG G  A+S+   M  + V P+   FTS L
Sbjct: 415 LACSRRVFDEMP--DKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSIL 472

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            ACSH GL+ EG ++F  M + +       HY+C+VDLLGRAG LDEAY +IRTM +KPT
Sbjct: 473 SACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPT 532

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
             +W ALL A  +H N++L E++A+ +F++ P+   +Y+ LS +Y+A +RW D E VR +
Sbjct: 533 SDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAM 592

Query: 645 MDEKGLRKAPAHSLIEVRNIL 665
           +  KGL+K+P  S IE+ N++
Sbjct: 593 VRRKGLKKSPGCSFIELDNMV 613



 Score =  302 bits (774), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 173/502 (34%), Positives = 278/502 (55%), Gaps = 27/502 (5%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPL--FTHLRSSLVRAY---GHVSNVR 64
           P T+     L+Q +  TKS    +QLHA +I+   L   T+L + L   Y   G +S   
Sbjct: 56  PLTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAE 115

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           ++FD +  ++SFL+N +++ YA NG    SL ++  ML  G+   DN+TYP V+KAC DL
Sbjct: 116 VIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQ-RADNFTYPFVLKACGDL 174

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
              ++G  +H  V++ G + D +VGN L+AMY  FG++  AR VFD M E  + SWNT+I
Sbjct: 175 LLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMI 234

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           SGY KNA +  A +VFD M K+G+  DC +++ +L AC  LK ++ G++IH       +G
Sbjct: 235 SGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIG 294

Query: 245 K-NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
             N    N+L++MY  C  + +AR +F+R+  +D V+W SMI GYA NGD   +L LF+ 
Sbjct: 295 NYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRR 354

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M  +G  P+ +T  ++L AC  +  L+ G S+H++ +K+  +   IV TAL+DMY+KC  
Sbjct: 355 MALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGS 414

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           +  S +VF     K  V W+A++AG   +G  R+A+ +   M    V P++    S+L A
Sbjct: 415 LACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSA 474

Query: 424 YA----------ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
            +          I   +++  N+   L  Y         + ++D+  + G L+ A+ I  
Sbjct: 475 CSHAGLVVEGKEIFYKMEKEYNVKPALSHY---------SCMVDLLGRAGHLDEAYVIIR 525

Query: 474 EIPIKDKDIVVWSVIIAGYGMH 495
            + IK     +W+ ++    +H
Sbjct: 526 TMEIKPTSD-IWAALLTASRLH 546


>gi|255559826|ref|XP_002520932.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539898|gb|EEF41477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 757

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 234/666 (35%), Positives = 376/666 (56%), Gaps = 14/666 (2%)

Query: 3   GPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFII-TSGPLFTHLRSSLVRAY---G 58
           G SHH L  T   +   V +  +  S    K LHA +I T+   FT + +S++  Y   G
Sbjct: 57  GISHHLLDVT---LFPPVLKACSYLSYIDGKCLHACLIKTAFDSFTSIGNSILNFYIKCG 113

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
            +     +FD M  R S  +N ++      GA  + L  F+   R+  + P+  T  +++
Sbjct: 114 ELDTAVSVFDSMRSRDSVSWNVLIHGCLDYGALVEGLWQFINA-RVAGFEPNISTLVLLV 172

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
           +AC  L  ++ G+ LHG ++ +G      V N  + MY +  ++  AR +FD M E  V+
Sbjct: 173 QACRSLRAKQEGLQLHGYLIQSGLWASWSVQNSFLCMYADV-DMDCARILFDEMPEKDVI 231

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           SW+ +I GY +    +  L +F  ML  S + PD   +VSVL AC     I MGR++H L
Sbjct: 232 SWSAMIGGYVQYLEDQIGLQIFQKMLSTSRITPDGVILVSVLKACANSVNITMGRLVHGL 291

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                L  ++   N+L+DMY KC     A  VF  M  R+ V+W S+++G  LN     A
Sbjct: 292 TICRGLDSDLFVKNSLIDMYSKCKDAGSAFEVFSEMPRRNNVSWNSLLSGLILNKKYSEA 351

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L L   M+ EG+  + +T+ + L  C    +    +++H  TI++  E   IV  +LID 
Sbjct: 352 LLLVYSMRTEGIEADEVTLVNCLQICKYFAHPYHCKAVHCATIRRGCESNEIVLNSLIDA 411

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAKCNL++L+++VF+RT ++  V W+ ++AG  H G   +A+ +F++M   +  PN  T+
Sbjct: 412 YAKCNLIELAWEVFSRTRRRDVVLWSTMIAGFAHCGKPDEAIAVFQKMNEGIEVPNAVTI 471

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            +LL A ++ A+L+++M  H   IR G  + V V T ++D+YSKCG +E++ K F++IP 
Sbjct: 472 INLLQACSVSAELKRSMWAHGAAIRRGLAAEVAVGTAIVDMYSKCGEIEASRKAFNQIP- 530

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
             K+I+ WS +IA YGM+G    A++L  +M    ++PN +T+ S L ACSHGGL++ GL
Sbjct: 531 -QKNIITWSTMIAAYGMNGLAHEALALLAQMKSHEIKPNALTYLSVLTACSHGGLVEMGL 589

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP--LKPTHAVWGALLGAC 595
            +F  M+++H      +HY+C+VD+L RAG+LD+A +LIR MP   +   +VWGALL AC
Sbjct: 590 SVFKSMIQDHGVDPEFEHYSCMVDMLSRAGKLDDAMELIRMMPETFRAGASVWGALLSAC 649

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
             + +  LGE A   + ELEP N   Y+L S +Y++   W +A  ++ +  E+G+R    
Sbjct: 650 RTYRSSTLGEKAVYQVLELEPLNLAGYLLASSMYASDGLWDNAARMKLLARERGVRAVAG 709

Query: 656 HSLIEV 661
           +S++ V
Sbjct: 710 YSIVHV 715


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/564 (37%), Positives = 332/564 (58%), Gaps = 10/564 (1%)

Query: 105 GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG-EVK 163
           GE +     Y  +++ CT +     G+ +H  V+ +G + D FVGN L+ +Y   G +  
Sbjct: 112 GEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFP 171

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
             RKVFD ++   V+SW ++ISGY +      +L +F  ML  GVEP+  ++ +V+ AC 
Sbjct: 172 ETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACS 231

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
            L ++++GR+ H +V G     N    +AL+DM+ +  ++++AR +FD + E D + WTS
Sbjct: 232 ELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTS 291

Query: 284 MINGYALNGDVRNALGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           +I+    N     AL  F  MQ + G+ P+  T G++L+AC +L  LK+G+ +HA  I  
Sbjct: 292 IISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITT 351

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
                V+VE++L+DMY KC  V  S ++F R   K +V W+A+L G   NG  +  +++F
Sbjct: 352 GFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIF 411

Query: 403 RQMLVEVVEPNDA-TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
           R+M     E  D     ++L   A LA ++Q   +HC  IR G    V V + L+D+Y+K
Sbjct: 412 RKM-----EKVDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAK 466

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
           CG +E A  IF ++P+++  ++ W+ +I G+  +G GE A+ +F +MV+ G++P+ ++F 
Sbjct: 467 CGCIEYAQTIFDQMPVRN--LITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFI 524

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581
             L ACSH GL+DEG + F  M +++      +HY+C+VDLLGRAG L+EA  LI T   
Sbjct: 525 GILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDF 584

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENV 641
           +   ++W ALLGAC    N E+ E  AK + ELEP+   +YVLL+ +Y AV RW DA  +
Sbjct: 585 RDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRI 644

Query: 642 RDVMDEKGLRKAPAHSLIEVRNIL 665
           R +M ++G+ K P  S IE +N L
Sbjct: 645 RRLMKDRGVNKMPGKSWIETKNNL 668



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 191/367 (52%), Gaps = 24/367 (6%)

Query: 51  SSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           S+L+  +G    + + R LFDE+ E  +  + +++    +N    ++L+ F  M R    
Sbjct: 259 SALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGM 318

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PD +T+  V+ AC +L   K G  +H +V+ TGF  +  V + L+ MY   G V  +++
Sbjct: 319 CPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQR 378

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +FD M   + VSW+ L+ GY +N   K  + +F  M K     D     ++L  C  L  
Sbjct: 379 IFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKV----DLYCFGTILRTCAGLAA 434

Query: 228 IEMGRMIH--ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           +  G+ +H   +  GG   +++   +ALVD+Y KCG +  A+ +FD+M  R+++TW SMI
Sbjct: 435 VRQGKEVHCQYIRKGG--WRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMI 492

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
            G+A NG    AL +F  M  EG++P+ ++   +L ACS    +  GR  +  ++ ++  
Sbjct: 493 GGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGRE-YFISMTKDYG 551

Query: 346 CEVIVE--TALIDMYAKCNLVKLSFQVFARTS--KKKTVPWNAILAGC-------VHNGL 394
            +V +E  + ++D+  +  L++ + ++   TS  +  +  W A+L  C       +   +
Sbjct: 552 IKVGIEHYSCMVDLLGRAGLLEEA-EILIETSDFRDDSSLWAALLGACTTCTNYEIAERI 610

Query: 395 ARKAVEL 401
           A++ +EL
Sbjct: 611 AKRVMEL 617



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 157/314 (50%), Gaps = 6/314 (1%)

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           +G++  AL L + +    +    +   SLL  C+ +     G  +HA  IK  LE +  V
Sbjct: 96  SGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFV 155

Query: 351 ETALIDMYAKCNL-VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
             +L+ +Y K       + +VF     K  + W ++++G V  G    ++ELF +ML   
Sbjct: 156 GNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYG 215

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           VEPN  TL++++ A + L DL+     H  ++  GF S   +++ LID++ +  +L+ A 
Sbjct: 216 VEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDAR 275

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS-GVQPNEVTFTSALHACS 528
           ++F E  + + D + W+ II+    +   + A+  F  M +  G+ P+  TF + L AC 
Sbjct: 276 QLFDE--LLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACG 333

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           + G L +G ++   ++     C      + +VD+ G+ G + E+  +   MP+K + + W
Sbjct: 334 NLGRLKQGKEVHAKVITTG-FCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVS-W 391

Query: 589 GALLGACVIHGNVE 602
            ALLG    +G+ +
Sbjct: 392 SALLGGYCQNGDFK 405


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/633 (34%), Positives = 356/633 (56%), Gaps = 9/633 (1%)

Query: 35  LHAFIITSG-PLFTHLRSSLVRAYGHVS---NVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           +HA  I  G     ++ SSL+  YG      + R +FD +S+++  ++N ++ +Y+QNG 
Sbjct: 239 VHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGF 298

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             + +++FL M+  G  +PD +TY  ++  C    + ++G  LH  ++   F  + FV N
Sbjct: 299 LSNVMELFLDMISCG-IHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNN 357

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            LI MY   G +K A K F+ M     +SWN +I GY +      A  +F  M+  G+ P
Sbjct: 358 ALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVP 417

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D  S+ S+L ACG +K +E G+  H L     L  N+ A ++L+DMY KCG + +A   +
Sbjct: 418 DEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTY 477

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
             M ER VV+  ++I GYAL  + + ++ L   MQ  G++P+ +T  SL+  C     + 
Sbjct: 478 SSMPERSVVSVNALIAGYALK-NTKESINLLHEMQILGLKPSEITFASLIDVCKGSAKVI 536

Query: 331 RGRSLHAWTIKQNLEC-EVIVETALIDMYAKCNLVKLSFQVFAR-TSKKKTVPWNAILAG 388
            G  +H   +K+ L C    + T+L+ MY     +  +  +F+  +S K  V W A+++G
Sbjct: 537 LGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTALISG 596

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            + N  +  A+ L+R+M    + P+ AT  ++L A A+L+ L     IH  +   GF   
Sbjct: 597 HIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLD 656

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
              S+ L+D+Y+KCG ++S+ ++F E+  K KD++ W+ +I G+  +G+ + A+ +F EM
Sbjct: 657 ELTSSALVDMYAKCGDVKSSVQVFEELATK-KDVISWNSMIVGFAKNGYAKCALKVFDEM 715

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
            QS + P++VTF   L ACSH G + EG  +F+ M+  +    R DHY C+VDLLGR G 
Sbjct: 716 TQSCITPDDVTFLGVLTACSHAGWVYEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGF 775

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           L EA + I  + ++P   +W  LLGAC IHG+ + G+ AAK L ELEP++   YVLLS +
Sbjct: 776 LKEAEEFIDKLEVEPNAMIWANLLGACRIHGDEKRGQRAAKKLIELEPQSSSPYVLLSNM 835

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           Y+A   W +A ++R  M +K ++K P  S I V
Sbjct: 836 YAASGNWDEARSLRRTMIKKDIQKIPGCSWIVV 868



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 144/540 (26%), Positives = 274/540 (50%), Gaps = 11/540 (2%)

Query: 58  GHVSNVRILFDEMSE--RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
           G + +   LF +M    R+   +N ++  +A+     ++L  F  M + G       T  
Sbjct: 163 GKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHG-VKSSRSTLA 221

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
            V+ A   LA    G+ +H   +  GF+   +V + LI MY        AR+VFDA+ + 
Sbjct: 222 SVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQK 281

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
           +++ WN ++  Y +N +    + +F  M+  G+ PD  +  S+L  C   + +E+GR +H
Sbjct: 282 NMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLH 341

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
             +   R   N+   NAL+DMY K G++ EA   F+ M+ RD ++W ++I GY       
Sbjct: 342 SAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEA 401

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            A  LF+ M  +G+ P+ +++ S+LSAC ++  L+ G+  H  ++K  LE  +   ++LI
Sbjct: 402 GAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLI 461

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           DMY+KC  +K + + ++   ++  V  NA++AG       ++++ L  +M +  ++P++ 
Sbjct: 462 DMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALKN-TKESINLLHEMQILGLKPSEI 520

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE-VSTGLIDIYSKCGSLESAHKIFSE 474
           T  SL+      A +   + IHC +++ G L   E + T L+ +Y     L  A+ +FSE
Sbjct: 521 TFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSE 580

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
                K IV+W+ +I+G+  +   + A++L++EM  + + P++ TF + L AC+    L 
Sbjct: 581 FS-SLKSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALLSSLH 639

Query: 535 EGLDLFNFMLENHQTCSRADHYT--CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           +G ++ + +     T    D  T   +VD+  + G +  +  +   +  K     W +++
Sbjct: 640 DGREIHSLIF---HTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMI 696



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 142/465 (30%), Positives = 245/465 (52%), Gaps = 8/465 (1%)

Query: 156 YMNFGEVKAARKVFDAMWE--HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCA 213
           Y++ G++  A ++F  M     +VV+WN +ISG+ K A+ +EAL  F  M K GV+   +
Sbjct: 159 YISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRS 218

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           ++ SVL A   L  +  G ++H          +I   ++L++MY KC   ++AR VFD +
Sbjct: 219 TLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAI 278

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
           S+++++ W +M+  Y+ NG + N + LF  M   G+ P+  T  S+LS C+   YL+ GR
Sbjct: 279 SQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGR 338

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            LH+  IK+     + V  ALIDMYAK   +K + + F   + +  + WNAI+ G V   
Sbjct: 339 QLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEE 398

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
           +   A  LFR+M+++ + P++ +L S+L A   +  L+     HC  ++ G  + +   +
Sbjct: 399 VEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGS 458

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            LID+YSKCG ++ AHK +S +P  ++ +V  + +IAGY +    E+ ++L  EM   G+
Sbjct: 459 SLIDMYSKCGDIKDAHKTYSSMP--ERSVVSVNALIAGYALKNTKES-INLLHEMQILGL 515

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
           +P+E+TF S +  C     +  GL +   +++    C      T ++ +   + RL +A 
Sbjct: 516 KPSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADAN 575

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
            L        +  +W AL+     H   E  +VA     E+   N
Sbjct: 576 ILFSEFSSLKSIVMWTALISG---HIQNECSDVALNLYREMRDNN 617



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 153/512 (29%), Positives = 242/512 (47%), Gaps = 52/512 (10%)

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
           +S   L+ +   +  G ++PD +T+ + + AC  L    LG A+H  V+ +G +  +F  
Sbjct: 27  SSERVLQFYASFMNSG-HSPDQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSFCQ 85

Query: 150 NCLIAMYMNFGEVKAARKVF-DAMWEH-SVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
             LI +Y     +  AR +F  A + H   VSW  LISGY +     EAL +FD M  S 
Sbjct: 86  GALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSA 145

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           V PD  ++V+VL A                                   Y+  G +++A 
Sbjct: 146 V-PDQVALVTVLNA-----------------------------------YISLGKLDDAC 169

Query: 268 LVFDRM--SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
            +F +M    R+VV W  MI+G+A       AL  F  M   GV+ +  T+ S+LSA +S
Sbjct: 170 QLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIAS 229

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           L  L  G  +HA  IKQ  E  + V ++LI+MY KC +   + QVF   S+K  + WNA+
Sbjct: 230 LAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAM 289

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           L     NG     +ELF  M+   + P++ T  S+L   A    L+    +H  +I+  F
Sbjct: 290 LGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRF 349

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
            S + V+  LID+Y+K G+L+ A K F  +  +D   + W+ II GY        A SLF
Sbjct: 350 TSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDH--ISWNAIIVGYVQEEVEAGAFSLF 407

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL----FNFMLENHQTCSRADHYTCIVD 561
           + M+  G+ P+EV+  S L AC +  +L+ G           LE +     +     ++D
Sbjct: 408 RRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSS-----LID 462

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
           +  + G + +A+    +MP +   +V   + G
Sbjct: 463 MYSKCGDIKDAHKTYSSMPERSVVSVNALIAG 494



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/418 (26%), Positives = 190/418 (45%), Gaps = 41/418 (9%)

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V  WN  + G  K+  ++  L  +   + SG  PD  +    L AC  L+ + +GR +H 
Sbjct: 13  VRQWNWRVQGT-KHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHS 71

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR--MSERDVVTWTSMINGYALNGDV 294
            V    L        AL+ +Y KC S+  AR +F          V+WT++I+GY   G  
Sbjct: 72  CVIKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLP 131

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             AL +F  M+   V P+ + + ++L+A     Y+  G+   A  + Q +   +      
Sbjct: 132 HEALHIFDKMRNSAV-PDQVALVTVLNA-----YISLGKLDDACQLFQQMPIPI------ 179

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
                                 +  V WN +++G        +A+  F QM    V+ + 
Sbjct: 180 ----------------------RNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSR 217

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
           +TL S+L A A LA L   + +H + I+ GF S + V++ LI++Y KC   + A ++F  
Sbjct: 218 STLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFD- 276

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
             I  K+++VW+ ++  Y  +G     + LF +M+  G+ P+E T+TS L  C+    L+
Sbjct: 277 -AISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLE 335

Query: 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
            G  L + +++   T S       ++D+  +AG L EA      M  +  H  W A++
Sbjct: 336 VGRQLHSAIIKKRFT-SNLFVNNALIDMYAKAGALKEAGKHFEHMTYRD-HISWNAII 391


>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Brachypodium distachyon]
          Length = 678

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/645 (35%), Positives = 345/645 (53%), Gaps = 10/645 (1%)

Query: 25  ATKSIAGTKQLHAFIITSGPLFTHLRS-----SLVRAYGHVSNVRILFDEMSERSSFLYN 79
           A  ++   + LHA ++  G L   LR+     S   A G +++ R + DE     ++ Y 
Sbjct: 37  ACTTLPSLRALHARLLAHG-LLRGLRAHTKLLSCYAALGDLASARRVLDETPHPDAYTYK 95

Query: 80  TVMKMYAQNGASHDSLKMFLGMLR-LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
             +  +A  G   +++ +   M R       D     + +KA    A    G  LH  V+
Sbjct: 96  VALGWHAAAGRHAEAVAVHRDMRRRCPAEQEDVVVLSLALKAAVRSADFGYGRRLHCDVV 155

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
             G   D FV N L+ MY   G++K ARKVFD + + +VVSW +++SG  +N  AKE LV
Sbjct: 156 KAGGG-DLFVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLV 214

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           +F+ M +  + P   ++ SVL AC  L  +  GR+IH  V    L  N     A++DMYV
Sbjct: 215 LFNEMRQESILPSEYTMASVLMACTMLGSLHQGRLIHGSVMKHGLVSNHFITAAMLDMYV 274

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           KCG   +AR VFD +S  D+V WT+MI GY  NG   +AL LF   +F  + PNS+TI +
Sbjct: 275 KCGEAEDARQVFDELSFVDLVLWTTMIVGYTQNGSPLDALLLFVDDKFMRIVPNSVTIAT 334

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           +LSA + L  L  GRS+H  ++K       +V  AL+DMYAKC  +  +  +F R   K 
Sbjct: 335 VLSASAQLRNLSLGRSIHGISVKLGAVENDVVMNALVDMYAKCKALSDAKGIFGRVLNKD 394

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
            V WN+++AG   N +   A+ LF  M V+   P+  ++ + L A   L DL      H 
Sbjct: 395 VVTWNSLIAGYAENDMGSDALMLFSHMRVQGSLPDAISVVNALSACVCLGDLLIGKCFHT 454

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           Y +++ F+S + V+T L+++Y+KC  L SA ++FSE  + D++ V W  +I GYGM G  
Sbjct: 455 YAVKHAFMSNIYVNTALLNLYNKCADLPSAQRVFSE--MNDRNTVTWGAMIGGYGMQGDS 512

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
             ++ LF EM++  +QPNE  FTS L  CSH G++  G   F  M           HY C
Sbjct: 513 AGSIDLFNEMLKDNIQPNEAVFTSILSTCSHTGMVTVGKKCFESMAHYFNITPSMKHYAC 572

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
           +VD+L RAG L+EA + I+ MP++   ++W A L  C +H  +E  E A   +  L P+ 
Sbjct: 573 MVDVLARAGNLEEALEFIQKMPMQADTSIWQAFLHGCKLHSRLEFAEEAVNRMMVLHPDT 632

Query: 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           P   V++S LY++  RW  +  +R +M E+GL K P  S + + N
Sbjct: 633 PDFCVMMSNLYTSYGRWDKSLAIRKLMKERGLVKLPGCSSVGLEN 677


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/563 (37%), Positives = 333/563 (59%), Gaps = 8/563 (1%)

Query: 105 GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG-EVK 163
           GE +     Y  +++ CT +     G+ +H  V+ +G + D FVGN L+ +Y   G +  
Sbjct: 53  GEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFP 112

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
             RKVFD ++   V+SW ++ISGY +      +L +F  ML  GVEP+  ++ +V+ AC 
Sbjct: 113 ETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACS 172

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
            L ++++GR+ H +V G     N    +AL+DM+ +  ++++AR +FD + E D + WTS
Sbjct: 173 ELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTS 232

Query: 284 MINGYALNGDVRNALGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           +I+    N     AL  F  MQ + G+ P+  T G++L+AC +L  LK+G+ +HA  I  
Sbjct: 233 IISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITT 292

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
                V+VE++L+DMY KC  V  S ++F R   K +V W+A+L G   NG  +  +++F
Sbjct: 293 GFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIF 352

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
           R+M  E V+       ++L   A LA ++Q   +HC  IR G    V V + L+D+Y+KC
Sbjct: 353 RKM--EKVDL--YCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKC 408

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G +E A  IF ++P+++  ++ W+ +I G+  +G GE A+ +F +MV+ G++P+ ++F  
Sbjct: 409 GCIEYAQTIFDQMPVRN--LITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIG 466

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
            L ACSH GL+DEG + F  M +++      +HY+C+VDLLGRAG L+EA  LI T   +
Sbjct: 467 ILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFR 526

Query: 583 PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642
              ++W ALLGAC    N E+ E  AK + ELEP+   +YVLL+ +Y AV RW DA  +R
Sbjct: 527 DDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIR 586

Query: 643 DVMDEKGLRKAPAHSLIEVRNIL 665
            +M ++G+ K P  S IE +N L
Sbjct: 587 RLMKDRGVNKMPGKSWIETKNNL 609



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 191/367 (52%), Gaps = 24/367 (6%)

Query: 51  SSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           S+L+  +G    + + R LFDE+ E  +  + +++    +N    ++L+ F  M R    
Sbjct: 200 SALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGM 259

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PD +T+  V+ AC +L   K G  +H +V+ TGF  +  V + L+ MY   G V  +++
Sbjct: 260 CPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQR 319

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +FD M   + VSW+ L+ GY +N   K  + +F  M K     D     ++L  C  L  
Sbjct: 320 IFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKV----DLYCFGTILRTCAGLAA 375

Query: 228 IEMGRMIH--ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           +  G+ +H   +  GG   +++   +ALVD+Y KCG +  A+ +FD+M  R+++TW SMI
Sbjct: 376 VRQGKEVHCQYIRKGGW--RDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMI 433

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
            G+A NG    AL +F  M  EG++P+ ++   +L ACS    +  GR  +  ++ ++  
Sbjct: 434 GGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGRE-YFISMTKDYG 492

Query: 346 CEVIVE--TALIDMYAKCNLVKLSFQVFARTS--KKKTVPWNAILAGC-------VHNGL 394
            +V +E  + ++D+  +  L++ + ++   TS  +  +  W A+L  C       +   +
Sbjct: 493 IKVGIEHYSCMVDLLGRAGLLEEA-EILIETSDFRDDSSLWAALLGACTTCTNYEIAERI 551

Query: 395 ARKAVEL 401
           A++ +EL
Sbjct: 552 AKRVMEL 558



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 157/314 (50%), Gaps = 6/314 (1%)

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           +G++  AL L + +    +    +   SLL  C+ +     G  +HA  IK  LE +  V
Sbjct: 37  SGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFV 96

Query: 351 ETALIDMYAKCNL-VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
             +L+ +Y K       + +VF     K  + W ++++G V  G    ++ELF +ML   
Sbjct: 97  GNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYG 156

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           VEPN  TL++++ A + L DL+     H  ++  GF S   +++ LID++ +  +L+ A 
Sbjct: 157 VEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDAR 216

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS-GVQPNEVTFTSALHACS 528
           ++F E+   + D + W+ II+    +   + A+  F  M +  G+ P+  TF + L AC 
Sbjct: 217 QLFDELL--EPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACG 274

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           + G L +G ++   ++     C      + +VD+ G+ G + E+  +   MP+K + + W
Sbjct: 275 NLGRLKQGKEVHAKVITTG-FCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVS-W 332

Query: 589 GALLGACVIHGNVE 602
            ALLG    +G+ +
Sbjct: 333 SALLGGYCQNGDFK 346


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/587 (35%), Positives = 334/587 (56%), Gaps = 5/587 (0%)

Query: 77  LYNTVMKMYAQNGASHDSLKMFLGMLRLGEY-NPDNYTYPIVIKACTDLAWRKLGIALHG 135
           L+N ++  Y  N    ++L++F   L    Y  PD YTYP+V+KAC  L     G  +H 
Sbjct: 72  LWNALLSAYTNNFRFVEALQLF-DQLNCNSYVRPDFYTYPVVLKACGGLGRVIYGRRIHN 130

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
            +L TG   D FVG+ L+ MY    +   A K+FD   +  V  WN +IS YFK+  A+ 
Sbjct: 131 HLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYFKDGKAEM 190

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           AL  FD M + G EP+  +   V+ +C  L  +E G+ +H  +   R+  +    +ALVD
Sbjct: 191 ALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLDAFVLSALVD 250

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           MY KCG +  A+ VF+++  ++ +TW +MI GY+L GD R+ + L   M  EG +P  +T
Sbjct: 251 MYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMT 310

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
           + S++ A S    L+ G+ +H + ++  ++ ++ ++ +LID Y KC  V  +  +F   S
Sbjct: 311 LTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTIS 370

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
           K + V WN +++G V  G   +A+ ++  M    V+P+  T +S L A + LA L +   
Sbjct: 371 KNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQLAALDKGRE 430

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           +H  +I +   +   V   L+D+Y+KCG ++ A K+F ++P   +D+V W+ +I  YG H
Sbjct: 431 LHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLP--KRDLVSWTSMIFAYGSH 488

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
           G    A+ LF EM +  V+ + VTF + L ACSH GL+DEG   FN M+  +      +H
Sbjct: 489 GQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEH 548

Query: 556 YTCIVDLLGRAGRLDEAYDLI-RTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           Y+C++DLLGRAGRL EAY+++ R+   +    +   L  AC++H N  LG    K L E+
Sbjct: 549 YSCLIDLLGRAGRLHEAYEILQRSKETRSDIGLLSTLFSACLLHNNFVLGIQIGKMLIEV 608

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +P++P  Y+LLS +Y++V +W +   VR  M E GL+K+P  S IE+
Sbjct: 609 DPDDPSTYILLSNMYASVNKWDEVRKVRRKMKELGLKKSPGCSWIEI 655



 Score =  245 bits (625), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 154/493 (31%), Positives = 251/493 (50%), Gaps = 6/493 (1%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           D  T    ++ CT     K G  +H R+   GF  +  +   LI  Y +  +  +A  VF
Sbjct: 2   DYVTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVF 61

Query: 170 DAM-WEHSVVSWNTLISGYFKNAYAKEALVVFDWM-LKSGVEPDCASVVSVLPACGYLKE 227
                   V  WN L+S Y  N    EAL +FD +   S V PD  +   VL ACG L  
Sbjct: 62  QTNDCPLDVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGR 121

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +  GR IH  +    L  ++   ++L++MY KC    +A  +FD   +RDV  W ++I+ 
Sbjct: 122 VIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISC 181

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y  +G    AL  F  M+  G  PNS+T   ++S+C+ L  L+RG+ +H   I++ +  +
Sbjct: 182 YFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERRILLD 241

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
             V +AL+DMY KC  ++++ +VF +  +K  + WNA++ G    G +R  +EL  +M  
Sbjct: 242 AFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMND 301

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           E  +P   TL S++ A +    L+    IH Y++R      + +   LID Y KCG + S
Sbjct: 302 EGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSS 361

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A  IF    I   ++V W+V+I+G+ M G+   A+ ++  M +  V+P+ +TF+S L AC
Sbjct: 362 AETIFR--TISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSAC 419

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           S    LD+G +L ++ + NH+  +       ++D+  + G +DEA  L   +P K     
Sbjct: 420 SQLAALDKGREL-HYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLP-KRDLVS 477

Query: 588 WGALLGACVIHGN 600
           W +++ A   HG 
Sbjct: 478 WTSMIFAYGSHGQ 490


>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 803

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/600 (35%), Positives = 347/600 (57%), Gaps = 9/600 (1%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LFDEM++  +F++N ++K +   G   ++L+++  M+  G    D++TYP VIK+ T ++
Sbjct: 82  LFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSG-VKADSFTYPFVIKSVTGIS 140

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             + G  +H  V+   F  D +V N LI++YM  G    A KVF+ M E  +VSWN++IS
Sbjct: 141 SLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPERDIVSWNSMIS 200

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY        +L++F  MLK G +PD  S +S L AC ++    MG+ +H      R+  
Sbjct: 201 GYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHAVRSRIET 260

Query: 246 -NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            ++    +++DMY K G V+ A  +F  + +R++V W  +I  YA N  V +A   FQ M
Sbjct: 261 GDVMVMTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDAFLCFQKM 320

Query: 305 QFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
             + G++P+ +T+ +LL AC+ L     GR++H + +++     ++++TALIDMY +   
Sbjct: 321 SEQNGLQPDVITLINLLPACAIL----EGRTIHGYAMRRGFLPHIVLDTALIDMYGEWGQ 376

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           +K +  +F R ++K  + WN+I+A  V NG    A+ELF+++    + P+  T+ S+LPA
Sbjct: 377 LKSAEVIFDRIAEKNLISWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIASILPA 436

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
           YA    L +   IH Y+++  + S   +   L+ +Y+ CG LE A K F+ + +KD  +V
Sbjct: 437 YAESLSLSEGRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKD--VV 494

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ II  Y +HG G  +V LF EM+ S V PN+ TF S L ACS  G++DEG + F  M
Sbjct: 495 SWNSIIMAYAVHGFGRISVCLFSEMIASKVDPNKSTFASLLAACSISGMVDEGWEYFESM 554

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
              +      +HY  ++DL+GR G    A   IR MP  PT  +WG+LL A   H ++ +
Sbjct: 555 KREYGIDPGIEHYGYMLDLIGRTGNFSSAKRFIREMPFLPTARIWGSLLNASRNHNDITV 614

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            E AA+ +F++E +N G YVLL  +Y+  RRW+D   ++ +M+ KG+ +  + S +E ++
Sbjct: 615 AEFAAEQIFKMEHDNTGCYVLLLNMYAEARRWEDVNRIKLLMESKGISRTSSRSTVEAKS 674



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 135/446 (30%), Positives = 232/446 (52%), Gaps = 10/446 (2%)

Query: 156 YMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASV 215
           + + G ++ A ++FD M +     WN +I G+       EAL ++  M+ SGV+ D  + 
Sbjct: 70  FADSGLMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVKADSFTY 129

Query: 216 VSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE 275
             V+ +   +  +E G+ IH +V   R   ++   N+L+ +Y+K G   +A  VF+ M E
Sbjct: 130 PFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVFEEMPE 189

Query: 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
           RD+V+W SMI+GY    D   +L LF+ M   G +P+  +  S L ACS +Y    G+ L
Sbjct: 190 RDIVSWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPNMGKEL 249

Query: 336 HAWTIKQNLEC-EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
           H   ++  +E  +V+V T+++DMY+K   V  + ++F    ++  V WN ++     N  
Sbjct: 250 HCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSR 309

Query: 395 ARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
              A   F++M  +  ++P+  TL +LLPA AIL    +   IH Y +R GFL  + + T
Sbjct: 310 VTDAFLCFQKMSEQNGLQPDVITLINLLPACAIL----EGRTIHGYAMRRGFLPHIVLDT 365

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            LID+Y + G L+SA  IF  I   +K+++ W+ IIA Y  +G   +A+ LF+++  S +
Sbjct: 366 ALIDMYGEWGQLKSAEVIFDRIA--EKNLISWNSIIAAYVQNGKNYSALELFQKLWDSSL 423

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
            P+  T  S L A +    L EG  +  +++++    S       +V +    G L++A 
Sbjct: 424 LPDSTTIASILPAYAESLSLSEGRQIHAYIVKSRYG-SNTIILNSLVHMYAMCGDLEDAR 482

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHG 599
                + LK     W +++ A  +HG
Sbjct: 483 KCFNHVLLKDV-VSWNSIIMAYAVHG 507



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/268 (33%), Positives = 138/268 (51%), Gaps = 4/268 (1%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           YG VS    +F  + +R+   +N ++  YA+N    D+   F  M       PD  T   
Sbjct: 276 YGEVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDAFLCFQKMSEQNGLQPDVITLIN 335

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           ++ AC  L     G  +HG  +  GF     +   LI MY  +G++K+A  +FD + E +
Sbjct: 336 LLPACAILE----GRTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKN 391

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           ++SWN++I+ Y +N     AL +F  +  S + PD  ++ S+LPA      +  GR IH 
Sbjct: 392 LISWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIASILPAYAESLSLSEGRQIHA 451

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            +   R G N    N+LV MY  CG + +AR  F+ +  +DVV+W S+I  YA++G  R 
Sbjct: 452 YIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAYAVHGFGRI 511

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACS 324
           ++ LF  M    V PN  T  SLL+ACS
Sbjct: 512 SVCLFSEMIASKVDPNKSTFASLLAACS 539



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 138/285 (48%), Gaps = 8/285 (2%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPL-FTHLRSSLVRAYG---HVSNVRILFDEMS 71
           VI L+    A   + G + +H + +  G L    L ++L+  YG    + +  ++FD ++
Sbjct: 330 VITLINLLPACAILEG-RTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIA 388

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
           E++   +N+++  Y QNG ++ +L++F  +       PD+ T   ++ A  +      G 
Sbjct: 389 EKNLISWNSIIAAYVQNGKNYSALELFQKLWD-SSLLPDSTTIASILPAYAESLSLSEGR 447

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H  ++ + +  +T + N L+ MY   G+++ ARK F+ +    VVSWN++I  Y  + 
Sbjct: 448 QIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAYAVHG 507

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAAW 250
           + + ++ +F  M+ S V+P+ ++  S+L AC     ++ G      +     +   I  +
Sbjct: 508 FGRISVCLFSEMIASKVDPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHY 567

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVV-TWTSMINGYALNGDV 294
             ++D+  + G+ + A+     M        W S++N    + D+
Sbjct: 568 GYMLDLIGRTGNFSSAKRFIREMPFLPTARIWGSLLNASRNHNDI 612


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/589 (37%), Positives = 352/589 (59%), Gaps = 7/589 (1%)

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           ++FL+NT+++ Y+  G     L+++  M+R+G   PD++T+P V+KAC D    + G  +
Sbjct: 6   TAFLWNTLIRGYSIAGVG-GGLEVYNQMVRIG-VRPDDHTFPFVLKACADAFEVRKGREV 63

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           HG V+  GF+ D FVGN L++ Y N G ++ A +VFD M E  +VSWNT+I  +  N + 
Sbjct: 64  HGSVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWH 123

Query: 194 -KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            ++AL +F  M+  G++P+  ++ S LP    L+  + GR +H       L  +I   N+
Sbjct: 124 YRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANS 183

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+DMY K G   EA  VF ++  ++VV+W +MI  +A N     A+GL + MQ  G  PN
Sbjct: 184 LIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPN 243

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           S+T  ++L AC+ +  ++ G+ +HA +I      ++ V  AL DMYAK   +KL+  VF 
Sbjct: 244 SVTFTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARNVF- 302

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
            TS +  V +N ++ G        +++ LF +M +  ++ ++ +    L A A L  ++Q
Sbjct: 303 DTSLRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQ 362

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              IH +L+R  F   + V+  L+D Y+KCG +  A  IF  +   +KD+  W+ +I GY
Sbjct: 363 GKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRM--TNKDVASWNTMILGY 420

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
           GM G  +TA+ LF+ M +  V+ + V+F + L ACSHGGLL++G   F+  L+       
Sbjct: 421 GMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFD-ELKARGIEPT 479

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
             HY C+VDLLGRAG ++EA +LI+ +P+ P   +WGALLGAC I+GN+EL   AA+ LF
Sbjct: 480 QMHYACMVDLLGRAGLMEEAAELIKGLPIVPDANIWGALLGACRIYGNLELAAWAAEHLF 539

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           EL+PE+ G Y LLS +Y+   RW +A  +R++M  +G++K+P  S +++
Sbjct: 540 ELKPEHSGYYTLLSNMYAETGRWDEANRIRELMKSRGVKKSPGCSWVQI 588



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 136/503 (27%), Positives = 242/503 (48%), Gaps = 15/503 (2%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSN 62
           P  HT P     V+K     A    +   +++H  ++  G      + ++L+  YG+   
Sbjct: 39  PDDHTFP----FVLKAC---ADAFEVRKGREVHGSVVKLGFESDVFVGNTLLSFYGNCGG 91

Query: 63  VRI---LFDEMSERSSFLYNTVMKMYAQNGASH-DSLKMFLGMLRLGEYNPDNYTYPIVI 118
           +R    +FDEM E+    +NT++ +++ NG  + D+L MF  M+  G   P++ T    +
Sbjct: 92  LRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDALDMFRLMIDEG-LKPNSITISSFL 150

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
               +L + K G  +HG  +  G + D F+ N LI MY   G    A  VF  +   +VV
Sbjct: 151 PVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVV 210

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           SWN +I+ + +N +   A+ +   M   G  P+  +  +VLPAC  +  +  G+ IH   
Sbjct: 211 SWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPGKEIHARS 270

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
                  ++   NAL DMY K G +  AR VFD  S RD V++  +I G++   D   +L
Sbjct: 271 IHMGCAFDLFVSNALTDMYAKSGHLKLARNVFD-TSLRDEVSYNILIVGHSQTSDCSESL 329

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
            LF  MQ  G++ ++++    LSAC++L  +K+G+ +H + +++     + V  +L+D Y
Sbjct: 330 SLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFY 389

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
            KC  + L+  +F R + K    WN ++ G    G    A++LF  M  + VE +  +  
Sbjct: 390 TKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSFI 449

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           ++L A +    L++       L   G          ++D+  + G +E A ++   +PI 
Sbjct: 450 AVLSACSHGGLLEKGRKYFDELKARGIEPTQMHYACMVDLLGRAGLMEEAAELIKGLPIV 509

Query: 479 DKDIVVWSVIIAGYGMHGHGETA 501
             D  +W  ++    ++G+ E A
Sbjct: 510 -PDANIWGALLGACRIYGNLELA 531


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/597 (36%), Positives = 336/597 (56%), Gaps = 5/597 (0%)

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG-EYNPDNYTYPIVIKACTD 123
           ++FDEM ER++  + T++  YAQ+    ++ ++F  +   G E NP  + +  V+K    
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNP--FVFTTVLKLLVS 58

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
           + W +LG  +HG VL  G+  +TF+G  LI  Y   G V  AR+VFD +    +VSW  +
Sbjct: 59  MEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGM 118

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243
           I+ Y +N    EAL  F  M  +G +P+  +   VL AC  L+  + G+ +H  V     
Sbjct: 119 IASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNY 178

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
            +++     L+++Y +CG  ++A   F  M + DV+ W+ MI+ +A +G    AL +F  
Sbjct: 179 ERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQ 238

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M+   V PN  T  S+L A + +  L   +++H   +K  L  +V V  AL+  YAKC  
Sbjct: 239 MRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGC 298

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           ++ S ++F   S +  V WN I+   V  G   +A+ LF  ML   V+  + T +S+L A
Sbjct: 299 IEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRA 358

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
            A LA L+  + +HC   +  +   V V   LID+Y+KCGS++ A  +F  + ++DK  V
Sbjct: 359 CATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDK--V 416

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ II GY MHG G  A+ +F  M ++  +P+E+TF   L ACS+ G LDEG   F  M
Sbjct: 417 SWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSM 476

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
            +++      +HYTC+V L+GR+G LD+A   I  +P +P+  +W ALLGACVIH +VEL
Sbjct: 477 KQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVEL 536

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           G ++A+ + ELEP +  ++VLLS +Y+  RRW +   VR  M  KG++K P  S IE
Sbjct: 537 GRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIE 593



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 142/506 (28%), Positives = 257/506 (50%), Gaps = 14/506 (2%)

Query: 1   MNGPSHHTLPKTTHLVIKLV--QQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY 57
           ++G  H   P     V+KL+   ++A    I     +H  ++  G    T + ++L+ AY
Sbjct: 37  LHGEGHELNPFVFTTVLKLLVSMEWAELGRI-----VHGCVLKVGYGSNTFIGTALIDAY 91

Query: 58  ---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTY 114
              G VS  R +FDE+S +    +  ++  YA+N    ++L+ F   +R+  + P+N+T+
Sbjct: 92  SVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALE-FFSQMRVAGFKPNNFTF 150

Query: 115 PIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
             V+KAC  L     G  +H  VL T ++ D +VG  L+ +Y   G+   A + F  M +
Sbjct: 151 AGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPK 210

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
           + V+ W+ +IS + ++  +++AL +F  M ++ V P+  +  SVL A   ++ +++ + I
Sbjct: 211 NDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTI 270

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H       L  ++   NAL+  Y KCG + ++  +F+ +S+R+ V+W ++I  Y   GD 
Sbjct: 271 HGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDG 330

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             AL LF  M    V+   +T  S+L AC++L  L+ G  +H  T K     +V V  AL
Sbjct: 331 ERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNAL 390

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           IDMYAKC  +K +  +F     +  V WNAI+ G   +GL  +A+++F  M     +P++
Sbjct: 391 IDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDE 450

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
            T   +L A +    L +       + + YG    +E  T ++ +  + G+L+ A K   
Sbjct: 451 LTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIE 510

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGE 499
           +IP  +  +++W  ++    +H   E
Sbjct: 511 DIPF-EPSVMIWRALLGACVIHNDVE 535


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/637 (35%), Positives = 350/637 (54%), Gaps = 12/637 (1%)

Query: 34  QLHAFIITSG---PLFTHLRSSLVRAYG---HVSNVRILFDEMS-ERSSFLYNTVMKMYA 86
           QLHA  + +G    +F  + ++LV  YG    V   R++FDE   ER++  +N +M  Y 
Sbjct: 121 QLHALAMATGLGGDIF--VANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYV 178

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           +N     ++K+F G +  G   P+ + +  V+ ACT     + G  +H  V+ TG+D D 
Sbjct: 179 KNDRCSHAVKVF-GEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDV 237

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
           F  N L+ MY   G+++ A  VF  + E  VVSWN  ISG   + + + AL +   M  S
Sbjct: 238 FTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSS 297

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           G+ P+  ++ S+L AC       +GR IH  +       +      LVDMY K G +++A
Sbjct: 298 GLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDA 357

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
           + VFD + +RD+V W ++I+G +       AL LF  M+ EG   N  T+ ++L + +SL
Sbjct: 358 KKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASL 417

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             +   R +HA   K     +  V   LID Y KC+ +  +++VF +      + + +++
Sbjct: 418 EAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMI 477

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
                      A++LF +ML + ++P+   L+SLL A A L+  +Q   +H +LI+  F+
Sbjct: 478 TALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFM 537

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           S V     L+  Y+KCGS+E A   FS +P  +K +V WS +I G   HGHG+ A+ +F 
Sbjct: 538 SDVFAGNALVYTYAKCGSIEDADLAFSGLP--EKGVVSWSAMIGGLAQHGHGKRALDVFH 595

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
            MV   + PN +T TS L AC+H GL+DE    FN M E        +HY C++DLLGRA
Sbjct: 596 RMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRA 655

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           G+LD+A +L+ +MP +   AVWGALL A  +H + ELG +AA+ LF LEPE  G +VLL+
Sbjct: 656 GKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLLA 715

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
             Y++   W D   VR +M +  ++K PA S +E+++
Sbjct: 716 NTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKD 752



 Score =  301 bits (772), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 189/586 (32%), Positives = 301/586 (51%), Gaps = 13/586 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHV---SNVRILFDEMSERSS 75
           L+ +YAAT+S+     +HA ++ SG LF   R+ L+  Y       + R +FDE+ +   
Sbjct: 10  LLTRYAATQSLLQGAHIHAHLLKSG-LFAVFRNHLLSFYSKCRLPGSARRVFDEIPDPCH 68

Query: 76  FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHG 135
             +++++  Y+ N    D+L  F  M R      + +  P+V+K   D  +   G  LH 
Sbjct: 69  VSWSSLVTAYSNNAMPRDALGAFRSM-RSCSVRCNEFVLPVVLKCAPDAGF---GTQLHA 124

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD-AMWEHSVVSWNTLISGYFKNAYAK 194
             + TG   D FV N L+AMY  FG V  AR VFD A  E + VSWN L+S Y KN    
Sbjct: 125 LAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCS 184

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
            A+ VF  M+  GV+P+      V+ AC   +++E GR +H +V      K++   NALV
Sbjct: 185 HAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALV 244

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           DMY K G +  A +VF ++ E DVV+W + I+G  L+G  ++AL L   M+  G+ PN  
Sbjct: 245 DMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVF 304

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T+ S+L AC+       GR +H + +K N + +  +   L+DMYAK  L+  + +VF   
Sbjct: 305 TLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWI 364

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
            ++  V WNA+++GC H     +A+ LF +M  E  + N  TL ++L + A L  +    
Sbjct: 365 PQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTR 424

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            +H    + GFLS   V  GLID Y KC  L  A+++F +      DI+ ++ +I     
Sbjct: 425 QVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEK--HGSYDIIAFTSMITALSQ 482

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
             HGE A+ LF EM++ G+ P+    +S L+AC+     ++G  +   +++  Q  S   
Sbjct: 483 CDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR-QFMSDVF 541

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
               +V    + G +++A      +P K     W A++G    HG+
Sbjct: 542 AGNALVYTYAKCGSIEDADLAFSGLPEKGV-VSWSAMIGGLAQHGH 586



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 131/288 (45%), Gaps = 12/288 (4%)

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           TIG LL+  ++   L +G  +HA  +K  L    +    L+  Y+KC L   + +VF   
Sbjct: 6   TIGPLLTRYAATQSLLQGAHIHAHLLKSGL--FAVFRNHLLSFYSKCRLPGSARRVFDEI 63

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
                V W++++    +N + R A+  FR M    V  N+  L  +L       D     
Sbjct: 64  PDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKC---APDAGFGT 120

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            +H   +  G    + V+  L+ +Y   G ++ A  +F E    +++ V W+ +++ Y  
Sbjct: 121 QLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGC-ERNTVSWNGLMSAYVK 179

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           +     AV +F EMV  GVQPNE  F+  ++AC+    L+ G  +   ++   +T    D
Sbjct: 180 NDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVI---RTGYDKD 236

Query: 555 HYT--CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
            +T   +VD+  + G +  A  +   +P       W A +  CV+HG+
Sbjct: 237 VFTANALVDMYSKLGDIRMAAVVFGKVPETDV-VSWNAFISGCVLHGH 283


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/606 (35%), Positives = 352/606 (58%), Gaps = 8/606 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +S  R +FDEM  R    +N+++  Y+ +G   ++L+++   LR     PD++T   V
Sbjct: 155 GLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIY-HELRNSWIVPDSFTVSSV 213

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + A  +L   K G  LHG  L +G +  + V N L+AMY+ F     AR+VFD M     
Sbjct: 214 LPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDS 273

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE- 236
           V++NT+I GY K    +E++ +F   L    +PD  +V SVL ACG+L+++ + + I+  
Sbjct: 274 VTYNTMICGYLKLEMVEESVKMFLENLDQ-FKPDILTVTSVLCACGHLRDLSLAKYIYNY 332

Query: 237 -LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
            L AG  L   +   N L+D+Y KCG +  AR VF+ M  +D V+W S+I+GY  +GD+ 
Sbjct: 333 MLRAGFVLESTVK--NILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLM 390

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            A+ LF++M     + + +T   L+S  + L  LK G+ LH+  IK  +  ++ V  ALI
Sbjct: 391 EAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALI 450

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           DMYAKC  V  S ++F       TV WN +++ CV  G     +++  QM    V P+ A
Sbjct: 451 DMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMA 510

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           T    LP  A LA  +    IHC L+R+G+ S +++   LI++YSKCG LES+ ++F   
Sbjct: 511 TFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFER- 569

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
            +  +D+V W+ +I  YGM+G GE A+  F +M +SG+ P+ V F + ++ACSH GL+++
Sbjct: 570 -MSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEK 628

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           GL  F  M  +++     +HY C+VDLL R+ ++ +A + I+ MP++P  ++W ++L AC
Sbjct: 629 GLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLRAC 688

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
              G++E  E  ++ + EL P++PG  +L S  Y+A+R+W     +R  + +K ++K P 
Sbjct: 689 RTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSVRDKHIKKNPG 748

Query: 656 HSLIEV 661
           +S IE+
Sbjct: 749 YSWIEI 754



 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 177/618 (28%), Positives = 315/618 (50%), Gaps = 24/618 (3%)

Query: 24  AATKSIAGTKQLHAFIITSGPLFTHLRS-SLVRAYGH----VSNVRILFDEMSERSSFLY 78
           +++ ++   +++HA +I+ G   +   S  L+  Y H     S++ +       ++ +++
Sbjct: 15  SSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIW 74

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
           N++++ +++NG    +L+ F G LR  + +PD YT+P VIKAC  L   ++G  ++ ++L
Sbjct: 75  NSIIRAFSKNGWFPKALE-FYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQIL 133

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
             GF+ D +VGN L+ MY   G +  AR+VFD M    +VSWN+LISGY  + Y +EAL 
Sbjct: 134 EMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALE 193

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           ++  +  S + PD  +V SVLPA   L  ++ G+ +H       +       N L+ MY+
Sbjct: 194 IYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYL 253

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           K     +AR VFD M  RD VT+ +MI GY     V  ++ +F L   +  +P+ LT+ S
Sbjct: 254 KFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMF-LENLDQFKPDILTVTS 312

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           +L AC  L  L   + ++ + ++     E  V+  LID+YAKC  +  +  VF     K 
Sbjct: 313 VLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKD 372

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
           TV WN+I++G + +G   +A++LF+ M++   + +  T   L+     LADL+    +H 
Sbjct: 373 TVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHS 432

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
             I+ G    + VS  LID+Y+KCG +  + KIF+ +     D V W+ +I+     G  
Sbjct: 433 NGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGT--LDTVTWNTVISACVRFGDF 490

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD----LFNFMLENHQTCSRAD 554
            T + +  +M ++ V P+  TF   L  C+       G +    L  F  E+      A 
Sbjct: 491 ATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNA- 549

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
               ++++  + G L+ ++ +   M  +     W  ++ A  ++G    GE A +   ++
Sbjct: 550 ----LIEMYSKCGCLESSFRVFERMSRRDV-VTWTGMIYAYGMYGE---GEKALESFVDM 601

Query: 615 EPEN--PGNYVLLSKLYS 630
           E     P + V ++ +Y+
Sbjct: 602 EKSGIVPDSVVFIALIYA 619



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 124/238 (52%), Gaps = 6/238 (2%)

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
           R +S  I   LS+ S+L  L+R   +HA  I   L+        LID Y+       S  
Sbjct: 4   RVSSAFISRALSSSSNLNELRR---IHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLS 60

Query: 370 VFARTSKKKTV-PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           VF R S  K V  WN+I+     NG   KA+E + ++    V P+  T  S++ A A L 
Sbjct: 61  VFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLF 120

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
           D +    ++  ++  GF S + V   L+D+YS+ G L  A ++F E+P+  +D+V W+ +
Sbjct: 121 DAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPV--RDLVSWNSL 178

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
           I+GY  HG+ E A+ ++ E+  S + P+  T +S L A ++  ++ +G  L  F L++
Sbjct: 179 ISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKS 236


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 234/679 (34%), Positives = 370/679 (54%), Gaps = 33/679 (4%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-----PLFTHLRSSLVRAYG 58
           P ++  P        L++  A  + +   KQ+HA +   G         +   +L R  G
Sbjct: 8   PDNYAFPA-------LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
               V  +FD +SER+   +N+++           +L+ F  ML      P ++T   V+
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD-ENVEPSSFTLVSVV 119

Query: 119 KACTDLAWRK---LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
            AC++L   +   +G  +H   L  G ++++F+ N L+AMY   G++ +++ +  +    
Sbjct: 120 TACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGR 178

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
            +V+WNT++S   +N    EAL     M+  GVEPD  ++ SVLPAC +L+ +  G+ +H
Sbjct: 179 DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELH 238

Query: 236 EL-VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
              +  G L +N    +ALVDMY  C  V   R VFD M +R +  W +MI GY+ N   
Sbjct: 239 AYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHD 298

Query: 295 RNALGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
           + AL LF  M+   G+  NS T+  ++ AC       R  ++H + +K+ L+ +  V+  
Sbjct: 299 KEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNT 358

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM--LVEVV- 410
           L+DMY++   + ++ ++F +   +  V WN ++ G V +     A+ L  +M  L   V 
Sbjct: 359 LMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVS 418

Query: 411 --------EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
                   +PN  TL ++LP+ A L+ L +   IH Y I+    + V V + L+D+Y+KC
Sbjct: 419 KGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKC 478

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G L+ + K+F +IP   K+++ W+VII  YGMHG+G+ A+ L + M+  GV+PNEVTF S
Sbjct: 479 GCLQMSRKVFDQIP--QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFIS 536

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
              ACSH G++DEGL +F  M  ++     +DHY C+VDLLGRAGR+ EAY L+  MP  
Sbjct: 537 VFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRD 596

Query: 583 PTHA-VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENV 641
              A  W +LLGA  IH N+E+GE+AA+ L +LEP    +YVLL+ +YS+   W  A  V
Sbjct: 597 FNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEV 656

Query: 642 RDVMDEKGLRKAPAHSLIE 660
           R  M E+G+RK P  S IE
Sbjct: 657 RRNMKEQGVRKEPGCSWIE 675



 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 164/518 (31%), Positives = 262/518 (50%), Gaps = 25/518 (4%)

Query: 101 MLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF-VGNCLIAMYMNF 159
           M+ LG   PDNY +P ++KA  DL   +LG  +H  V   G+ +D+  V N L+ +Y   
Sbjct: 1   MIVLG-IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKC 59

Query: 160 GEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVL 219
           G+  A  KVFD + E + VSWN+LIS        + AL  F  ML   VEP   ++VSV+
Sbjct: 60  GDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVV 119

Query: 220 PACGYLKEIE---MGRMIHELVAGGRLGK-NIAAWNALVDMYVKCGSVNEARLVFDRMSE 275
            AC  L   E   MG+ +H    G R G+ N    N LV MY K G +  ++++      
Sbjct: 120 TACSNLPMPEGLMMGKQVH--AYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGG 177

Query: 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
           RD+VTW ++++    N  +  AL   + M  EGV P+  TI S+L ACS L  L+ G+ L
Sbjct: 178 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 237

Query: 336 HAWTIKQ-NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
           HA+ +K  +L+    V +AL+DMY  C  V    +VF     +K   WNA++AG   N  
Sbjct: 238 HAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEH 297

Query: 395 ARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
            ++A+ LF  M     +  N  T+  ++PA        +   IH ++++ G      V  
Sbjct: 298 DKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQN 357

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM----- 508
            L+D+YS+ G ++ A +IF +  ++D+D+V W+ +I GY    H E A+ L  +M     
Sbjct: 358 TLMDMYSRLGKIDIAMRIFGK--MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLER 415

Query: 509 -VQSG-----VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDL 562
            V  G     ++PN +T  + L +C+    L +G ++  + ++N+     A   + +VD+
Sbjct: 416 KVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG-SALVDM 474

Query: 563 LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             + G L  +  +   +P K     W  ++ A  +HGN
Sbjct: 475 YAKCGCLQMSRKVFDQIPQKNV-ITWNVIIMAYGMHGN 511


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 234/679 (34%), Positives = 370/679 (54%), Gaps = 33/679 (4%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-----PLFTHLRSSLVRAYG 58
           P ++  P        L++  A  + +   KQ+HA +   G         +   +L R  G
Sbjct: 95  PDNYAFPA-------LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 147

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
               V  +FD +SER+   +N+++           +L+ F  ML      P ++T   V+
Sbjct: 148 DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD-ENVEPSSFTLVSVV 206

Query: 119 KACTDLAWRK---LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
            AC++L   +   +G  +H   L  G ++++F+ N L+AMY   G++ +++ +  +    
Sbjct: 207 TACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGR 265

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
            +V+WNT++S   +N    EAL     M+  GVEPD  ++ SVLPAC +L+ +  G+ +H
Sbjct: 266 DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELH 325

Query: 236 EL-VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
              +  G L +N    +ALVDMY  C  V   R VFD M +R +  W +MI GY+ N   
Sbjct: 326 AYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHD 385

Query: 295 RNALGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
           + AL LF  M+   G+  NS T+  ++ AC       R  ++H + +K+ L+ +  V+  
Sbjct: 386 KEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNT 445

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM--LVEVV- 410
           L+DMY++   + ++ ++F +   +  V WN ++ G V +     A+ L  +M  L   V 
Sbjct: 446 LMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVS 505

Query: 411 --------EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
                   +PN  TL ++LP+ A L+ L +   IH Y I+    + V V + L+D+Y+KC
Sbjct: 506 KGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKC 565

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G L+ + K+F +IP   K+++ W+VII  YGMHG+G+ A+ L + M+  GV+PNEVTF S
Sbjct: 566 GCLQMSRKVFDQIP--QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFIS 623

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
              ACSH G++DEGL +F  M  ++     +DHY C+VDLLGRAGR+ EAY L+  MP  
Sbjct: 624 VFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRD 683

Query: 583 PTHA-VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENV 641
              A  W +LLGA  IH N+E+GE+AA+ L +LEP    +YVLL+ +YS+   W  A  V
Sbjct: 684 FNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEV 743

Query: 642 RDVMDEKGLRKAPAHSLIE 660
           R  M E+G+RK P  S IE
Sbjct: 744 RRNMKEQGVRKEPGCSWIE 762



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 164/521 (31%), Positives = 264/521 (50%), Gaps = 25/521 (4%)

Query: 98  FLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF-VGNCLIAMY 156
           ++ M+ LG   PDNY +P ++KA  DL   +LG  +H  V   G+ +D+  V N L+ +Y
Sbjct: 85  YVDMIVLG-IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLY 143

Query: 157 MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVV 216
              G+  A  KVFD + E + VSWN+LIS        + AL  F  ML   VEP   ++V
Sbjct: 144 RKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLV 203

Query: 217 SVLPACGYLKEIE---MGRMIHELVAGGRLGK-NIAAWNALVDMYVKCGSVNEARLVFDR 272
           SV+ AC  L   E   MG+ +H    G R G+ N    N LV MY K G +  ++++   
Sbjct: 204 SVVTACSNLPMPEGLMMGKQVH--AYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGS 261

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
              RD+VTW ++++    N  +  AL   + M  EGV P+  TI S+L ACS L  L+ G
Sbjct: 262 FGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 321

Query: 333 RSLHAWTIKQ-NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVH 391
           + LHA+ +K  +L+    V +AL+DMY  C  V    +VF     +K   WNA++AG   
Sbjct: 322 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQ 381

Query: 392 NGLARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
           N   ++A+ LF  M     +  N  T+  ++PA        +   IH ++++ G      
Sbjct: 382 NEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRF 441

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM-- 508
           V   L+D+YS+ G ++ A +IF +  ++D+D+V W+ +I GY    H E A+ L  +M  
Sbjct: 442 VQNTLMDMYSRLGKIDIAMRIFGK--MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQN 499

Query: 509 ----VQSG-----VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
               V  G     ++PN +T  + L +C+    L +G ++  + ++N+     A   + +
Sbjct: 500 LERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG-SAL 558

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           VD+  + G L  +  +   +P K     W  ++ A  +HGN
Sbjct: 559 VDMYAKCGCLQMSRKVFDQIPQKNV-ITWNVIIMAYGMHGN 598



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 81/149 (54%), Gaps = 3/149 (2%)

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           W  +L   V + L R+AV  +  M+V  ++P++    +LL A A L D++    IH ++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 442 RYGF-LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           ++G+ +  V V+  L+++Y KCG   + +K+F    I +++ V W+ +I+        E 
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDR--ISERNQVSWNSLISSLCSFEKWEM 182

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSH 529
           A+  F+ M+   V+P+  T  S + ACS+
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTACSN 211


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 234/679 (34%), Positives = 370/679 (54%), Gaps = 33/679 (4%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-----PLFTHLRSSLVRAYG 58
           P ++  P        L++  A  + +   KQ+HA +   G         +   +L R  G
Sbjct: 95  PDNYAFPA-------LLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 147

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
               V  +FD +SER+   +N+++           +L+ F  ML      P ++T   V+
Sbjct: 148 DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD-ENVEPSSFTLVSVV 206

Query: 119 KACTDLAWRK---LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
            AC++L   +   +G  +H   L  G ++++F+ N L+AMY   G++ +++ +  +    
Sbjct: 207 TACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGR 265

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
            +V+WNT++S   +N    EAL     M+  GVEPD  ++ SVLPAC +L+ +  G+ +H
Sbjct: 266 DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELH 325

Query: 236 EL-VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
              +  G L +N    +ALVDMY  C  V   R VFD M +R +  W +MI GY+ N   
Sbjct: 326 AYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHD 385

Query: 295 RNALGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
           + AL LF  M+   G+  NS T+  ++ AC       R  ++H + +K+ L+ +  V+  
Sbjct: 386 KEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNT 445

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM--LVEVV- 410
           L+DMY++   + ++ ++F +   +  V WN ++ G V +     A+ L  +M  L   V 
Sbjct: 446 LMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVS 505

Query: 411 --------EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
                   +PN  TL ++LP+ A L+ L +   IH Y I+    + V V + L+D+Y+KC
Sbjct: 506 KGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKC 565

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G L+ + K+F +IP   K+++ W+VII  YGMHG+G+ A+ L + M+  GV+PNEVTF S
Sbjct: 566 GCLQMSRKVFDQIP--QKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFIS 623

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
              ACSH G++DEGL +F  M  ++     +DHY C+VDLLGRAGR+ EAY L+  MP  
Sbjct: 624 VFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRD 683

Query: 583 PTHA-VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENV 641
              A  W +LLGA  IH N+E+GE+AA+ L +LEP    +YVLL+ +YS+   W  A  V
Sbjct: 684 FNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEV 743

Query: 642 RDVMDEKGLRKAPAHSLIE 660
           R  M E+G+RK P  S IE
Sbjct: 744 RRNMKEQGVRKEPGCSWIE 762



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 164/521 (31%), Positives = 264/521 (50%), Gaps = 25/521 (4%)

Query: 98  FLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF-VGNCLIAMY 156
           ++ M+ LG   PDNY +P ++KA  DL   +LG  +H  V   G+ +D+  V N L+ +Y
Sbjct: 85  YVDMIVLG-IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLY 143

Query: 157 MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVV 216
              G+  A  KVFD + E + VSWN+LIS        + AL  F  ML   VEP   ++V
Sbjct: 144 RKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLV 203

Query: 217 SVLPACGYLKEIE---MGRMIHELVAGGRLGK-NIAAWNALVDMYVKCGSVNEARLVFDR 272
           SV+ AC  L   E   MG+ +H    G R G+ N    N LV MY K G +  ++++   
Sbjct: 204 SVVTACSNLPMPEGLMMGKQVH--AYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGS 261

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
              RD+VTW ++++    N  +  AL   + M  EGV P+  TI S+L ACS L  L+ G
Sbjct: 262 FGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTG 321

Query: 333 RSLHAWTIKQ-NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVH 391
           + LHA+ +K  +L+    V +AL+DMY  C  V    +VF     +K   WNA++AG   
Sbjct: 322 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQ 381

Query: 392 NGLARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
           N   ++A+ LF  M     +  N  T+  ++PA        +   IH ++++ G      
Sbjct: 382 NEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRF 441

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM-- 508
           V   L+D+YS+ G ++ A +IF +  ++D+D+V W+ +I GY    H E A+ L  +M  
Sbjct: 442 VQNTLMDMYSRLGKIDIAMRIFGK--MEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQN 499

Query: 509 ----VQSG-----VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
               V  G     ++PN +T  + L +C+    L +G ++  + ++N+     A   + +
Sbjct: 500 LERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG-SAL 558

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           VD+  + G L  +  +   +P K     W  ++ A  +HGN
Sbjct: 559 VDMYAKCGCLQMSRKVFDQIPQKNV-ITWNVIIMAYGMHGN 598



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 81/149 (54%), Gaps = 3/149 (2%)

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           W  +L   V + L R+AV  +  M+V  ++P++    +LL A A L D++    IH ++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 442 RYGF-LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           ++G+ +  V V+  L+++Y KCG   + +K+F    I +++ V W+ +I+        E 
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDR--ISERNQVSWNSLISSLCSFEKWEM 182

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSH 529
           A+  F+ M+   V+P+  T  S + ACS+
Sbjct: 183 ALEAFRCMLDENVEPSSFTLVSVVTACSN 211


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/617 (35%), Positives = 340/617 (55%), Gaps = 8/617 (1%)

Query: 56  AYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
           A G ++  R +FD +    +  YN +++ Y+  G  H ++ ++  ML      P+ YT+P
Sbjct: 45  ARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYF-RVPPNKYTFP 103

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
            V+KAC+ LA    G  +H      G   D FV   LI +Y+       A  VF  M   
Sbjct: 104 FVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMR 163

Query: 176 SVVSWNTLISGYFKNAYAKEALV-VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
            VV+WN +++GY  +     A+  + D   + G+ P+ +++VS+LP       +  G  +
Sbjct: 164 DVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSV 223

Query: 235 HELVAGGRLGKN---IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           H       L +N   +    AL+DMY KC  +  A  VF  M+ R+ VTW+++I G+ L 
Sbjct: 224 HAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLC 283

Query: 292 GDVRNALGLFQLMQFEGVRPNSLT-IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
             +  A  LF+ M  EG+   S T + S L  C+SL  L+ G  LHA   K  +  ++  
Sbjct: 284 DRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTA 343

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
             +L+ MYAK  L+  +  +F   + K T+ + A+L+G V NG A +A  +F++M    V
Sbjct: 344 GNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNV 403

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           +P+ AT+ SL+PA + LA LQ     H  +I  G      +   LID+Y+KCG ++ + +
Sbjct: 404 QPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQ 463

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           +F ++P +D  IV W+ +IAGYG+HG G+ A +LF  M   G +P++VTF   + ACSH 
Sbjct: 464 VFDKMPARD--IVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHS 521

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           GL+ EG   F+ M   +    R +HY C+VDLL R G LDEAY  I++MPLK    VWGA
Sbjct: 522 GLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGA 581

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LLGAC IH N++LG+  ++ + +L PE  GN+VLLS ++SA  R+ +A  VR +   KG 
Sbjct: 582 LLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGF 641

Query: 651 RKAPAHSLIEVRNILTA 667
           +K+P  S IE+   L A
Sbjct: 642 KKSPGCSWIEINGSLHA 658



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 191/386 (49%), Gaps = 22/386 (5%)

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           L+    G + HE+       K+   W   ++ ++  G +  AR VFDR+   D   + ++
Sbjct: 18  LRRPPSGSISHEV-------KDNKEWQQELEQHIARGQLALARQVFDRIPAPDARAYNAL 70

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           I  Y+  G    A+ L++ M +  V PN  T   +L ACS+L  L  GR++HA      L
Sbjct: 71  IRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGL 130

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
             ++ V TALID+Y +C     +  VFA+   +  V WNA+LAG  ++G+   A+     
Sbjct: 131 HTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLD 190

Query: 405 MLVE-VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE----VSTGLIDIY 459
           M     + PN +TL SLLP  A    L Q  ++H Y +R  +L   E    + T L+D+Y
Sbjct: 191 MQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLR-AYLDQNEEQVLIGTALLDMY 249

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ-PNEV 518
           +KC  L  A ++F  + ++++  V WS +I G+ +      A +LFK+M+  G+   +  
Sbjct: 250 AKCKHLVYACRVFHGMTVRNE--VTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSAT 307

Query: 519 TFTSALHACSHGGLLDEGLDLFNFMLEN--HQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
           +  SAL  C+    L  G  L   + ++  H   +  +    ++ +  +AG ++EA  L 
Sbjct: 308 SVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGN---SLLSMYAKAGLINEATMLF 364

Query: 577 RTMPLKPTHAVWGALLGACVIHGNVE 602
             + +K T + +GALL   V +G  E
Sbjct: 365 DEIAIKDTIS-YGALLSGYVQNGKAE 389



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 136/272 (50%), Gaps = 17/272 (6%)

Query: 34  QLHAFIITSGPLFTHLRS--SLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           QLHA +  SG +   L +  SL+  Y   G ++   +LFDE++ + +  Y  ++  Y QN
Sbjct: 327 QLHALLAKSG-IHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQN 385

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G + ++  +F  M +     PD  T   +I AC+ LA  + G   HG V+I G  ++T +
Sbjct: 386 GKAEEAFLVFKKM-QACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSI 444

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N LI MY   G +  +R+VFD M    +VSWNT+I+GY  +   KEA  +F  M   G 
Sbjct: 445 CNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGF 504

Query: 209 EPDCASVVSVLPACGYLKEIEMGR-----MIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
           EPD  + + ++ AC +   +  G+     M H+     R+   I     +VD+  + G +
Sbjct: 505 EPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYI----CMVDLLARGGFL 560

Query: 264 NEARLVFDRMS-ERDVVTWTSMINGYALNGDV 294
           +EA      M  + DV  W +++    ++ ++
Sbjct: 561 DEAYQFIQSMPLKADVRVWGALLGACRIHKNI 592


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/622 (34%), Positives = 349/622 (56%), Gaps = 12/622 (1%)

Query: 53  LVRAYGHVSNVRI---LFDEMSERSS--FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           LV  Y   S ++I   +FD+M  R     L+N +++ YA NG   +++ ++  ML  G  
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYG-I 115

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            P+ +T+P V+KAC+ L     G  +H  +     + + +V   L+  Y   G +  A++
Sbjct: 116 TPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKE 175

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VFD M +  VV+WN++ISG+  +  + + +      +++ V P+ +++V VLPA   +  
Sbjct: 176 VFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNS 235

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMIN 286
           +  G+ IH          ++     ++D+Y KC  ++ AR +FD M   ++ VTW++M+ 
Sbjct: 236 LRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVG 295

Query: 287 GYALNGDVRNALGLF-QLMQFEG--VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN 343
            Y +   +R AL LF QL+  +   +  +++T+ +++  C++L  L  G  LH + IK  
Sbjct: 296 AYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSG 355

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
              +++V   L+ MYAKC ++  + + F     +  V + AI++G V NG + + + +F 
Sbjct: 356 FVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFL 415

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
           +M +  + P  ATL S+LPA A LA L      HCY I  GF +   +   LID+Y+KCG
Sbjct: 416 EMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCG 475

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            +++A K+F  +    + IV W+ +I  YG+HG G  A+ LF  M   G++P++VTF   
Sbjct: 476 KIDTARKVFDRM--HKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICL 533

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           + ACSH GL+ EG   FN M ++     R +HY C+VDLL RAG   E +  I  MPL+P
Sbjct: 534 ISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEP 593

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643
              VWGALL AC ++ NVELGE  +K + +L PE+ GN+VLLS +YSAV RW DA  VR 
Sbjct: 594 DVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRF 653

Query: 644 VMDEKGLRKAPAHSLIEVRNIL 665
              E+G  K+P  S IE+  ++
Sbjct: 654 TQKEQGFEKSPGCSWIEISGVV 675



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/475 (26%), Positives = 238/475 (50%), Gaps = 14/475 (2%)

Query: 48  HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL 104
           ++ ++LV  Y   G + + + +FD+M +R    +N+++  ++ +  S+D +   L  ++ 
Sbjct: 155 YVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQ- 213

Query: 105 GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA 164
            + +P++ T   V+ A   +   + G  +HG  +  GF  D  VG  ++ +Y     +  
Sbjct: 214 NDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDY 273

Query: 165 ARKVFDAMW-EHSVVSWNTLISGYFKNAYAKEALVVFD--WMLKSGVEPDCA-SVVSVLP 220
           AR++FD M    + V+W+ ++  Y    + +EAL +F    MLK  V    A ++ +V+ 
Sbjct: 274 ARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIR 333

Query: 221 ACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT 280
            C  L ++  G  +H          ++   N L+ MY KCG +N A   F+ M  RD V+
Sbjct: 334 VCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVS 393

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           +T++I+GY  NG+    L +F  MQ  G+ P   T+ S+L AC+ L  L  G   H + I
Sbjct: 394 FTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAI 453

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
                 + ++  ALIDMYAKC  +  + +VF R  K+  V WN ++     +G+  +A+ 
Sbjct: 454 ICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALL 513

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYA---ILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
           LF  M  E ++P+D T   L+ A +   ++A+ +   N       +G +  +E    ++D
Sbjct: 514 LFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQ--DFGIIPRMEHYACMVD 571

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
           + S+ G  +  H    ++P+ + D+ VW  +++   ++ + E    + K++ + G
Sbjct: 572 LLSRAGLFKEVHSFIEKMPL-EPDVRVWGALLSACRVYKNVELGEGVSKKIQKLG 625



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/400 (29%), Positives = 195/400 (48%), Gaps = 17/400 (4%)

Query: 218 VLPACGYLKEIEMGRMIHELVAG-------GRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           +L +C   K +  G++IH+ +           L      +  LVD+Y+ C  +  AR VF
Sbjct: 15  LLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKIARHVF 74

Query: 271 DRMSER--DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           D+M  R  +VV W  +I  YA NG    A+ L+  M   G+ PN  T   +L ACS+L  
Sbjct: 75  DKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACSALKE 134

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
              GR +H    +  LE  V V TAL+D YAKC  +  + +VF +  K+  V WN++++G
Sbjct: 135 ASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISG 194

Query: 389 -CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
             +H G   +   L  QM  + V PN +T+  +LPA A +  L+    IH + +R GF+ 
Sbjct: 195 FSLHEGSYDEVARLLVQMQND-VSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVG 253

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            V V TG++D+Y KC  ++ A +IF  + I  K+ V WS ++  Y +      A+ LF +
Sbjct: 254 DVVVGTGILDVYGKCQCIDYARRIFDMMGIV-KNEVTWSAMVGAYVVCDFMREALELFCQ 312

Query: 508 MV---QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           ++      +  + VT  + +  C++   L  G  L  + +++          T ++ +  
Sbjct: 313 LLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNT-LLSMYA 371

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
           + G ++ A      M L+     + A++   V +GN E G
Sbjct: 372 KCGIINGAMRFFNEMDLRDA-VSFTAIISGYVQNGNSEEG 410



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 144/293 (49%), Gaps = 9/293 (3%)

Query: 35  LHAFIITSGPLFT-HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           LH + I SG +    + ++L+  Y   G ++     F+EM  R +  +  ++  Y QNG 
Sbjct: 347 LHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGN 406

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
           S + L+MFL M +L   NP+  T   V+ AC  LA    G   H   +I GF  DT + N
Sbjct: 407 SEEGLRMFLEM-QLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICN 465

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            LI MY   G++  ARKVFD M +  +VSWNT+I  Y  +    EAL++FD M   G++P
Sbjct: 466 ALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKP 525

Query: 211 DCASVVSVLPACGYLKEIEMGRM-IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           D  + + ++ AC +   +  G+   + +     +   +  +  +VD+  + G   E    
Sbjct: 526 DDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSF 585

Query: 270 FDRMS-ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
            ++M  E DV  W ++++   +  +V    G+ + +Q  G  P S     LLS
Sbjct: 586 IEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLG--PESTGNFVLLS 636


>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 871

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 235/670 (35%), Positives = 373/670 (55%), Gaps = 25/670 (3%)

Query: 4   PSHH---TLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHV 60
           P++H    LP T HL           K     K LHA +I SG        SL  ++G +
Sbjct: 32  PNNHLPVPLPPTIHLS-------RICKHPTTVKTLHASLIISGHPPDTTLISLYASFGFL 84

Query: 61  SNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR--LGEYNPDNYTYPIVI 118
            + R LF  +   +   +  +++ +  N   H  +  F  + R  LG +N D   + I++
Sbjct: 85  RHARTLFHRLPSPTHHSFKLIIRWHFLNDV-HSHVVSFYNLARTTLGSFN-DLVVFSILL 142

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
           K  + L    L   LH  +L +    D+FV   L+  Y   G+++ ARKVFD + + SVV
Sbjct: 143 KTASQLRDIVLTTKLHCNILKSN-AADSFVLTSLVDAYSKCGKLRDARKVFDEIPDRSVV 201

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           SW ++I  Y +N  A+E L++F+ M +  ++ +  +V S++ AC  L  +  G+ +H  V
Sbjct: 202 SWTSMIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGCLHQGKWVHGYV 261

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER------DVVTWTSMINGYALNG 292
               +  N     +L++MYVKCG + +AR VFD  S        D+V WT+MI GY   G
Sbjct: 262 IKNGIEINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRG 321

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
             + AL LF   ++  + PNS+T+ SLLSAC+ L  +  G+ LH   +K  L+ +  +  
Sbjct: 322 YPQAALELFTDKKWYRILPNSVTLASLLSACAQLENIVMGKLLHVLVVKYGLD-DTSLRN 380

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           +L+DMYAKC L+  +  VFA T  K  V WN++++G   +G A +A++LF +M +E   P
Sbjct: 381 SLVDMYAKCGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRMESFLP 440

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV-VEVSTGLIDIYSKCGSLESAHKI 471
           +  T+  +L A A +   Q  +++H + ++YG +S  + V T L++ Y+KCG   SA  +
Sbjct: 441 DAVTVVGVLSACASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDATSARMV 500

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F  +   +K+ V W+ +I G GM G G  +++LF++M++  + PNEV FT+ L ACSH G
Sbjct: 501 FDGM--GEKNAVTWAAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAACSHSG 558

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
           +++EGL +F+FM +         HY C+VDLL RAG L EA D I  MP++P   V+GA 
Sbjct: 559 MVEEGLMIFDFMCKELNFVPSMKHYACMVDLLARAGNLQEALDFIDKMPVQPGVGVFGAF 618

Query: 592 LGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651
           L  C +H N + GEVA + + EL P+    YVL+S LY++  RW   + VR+++ ++GL 
Sbjct: 619 LHGCGLHSNFDFGEVAIRRMLELHPDQACYYVLISNLYASDGRWGMVKEVREMIKQRGLN 678

Query: 652 KAPAHSLIEV 661
           K P  SL+E+
Sbjct: 679 KVPGVSLVEM 688



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 119/533 (22%), Positives = 218/533 (40%), Gaps = 59/533 (11%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVRI 65
           LP +  L   L+   A  ++I   K LH  ++  G   T LR+SLV  Y   G + +   
Sbjct: 339 LPNSVTLA-SLLSACAQLENIVMGKLLHVLVVKYGLDDTSLRNSLVDMYAKCGLIPDAHY 397

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F    ++    +N+V+  YAQ+G+++++L +F   +R+  + PD  T   V+ AC  + 
Sbjct: 398 VFATTVDKDVVSWNSVISGYAQSGSAYEALDLF-NRMRMESFLPDAVTVVGVLSACASVG 456

Query: 126 WRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
             ++G++LHG  L  G      +VG  L+  Y   G+  +AR VFD M E + V+W  +I
Sbjct: 457 AHQIGLSLHGFALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGMGEKNAVTWAAMI 516

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG-RL 243
            G         +L +F  MLK  + P+     ++L AC +   +E G MI + +      
Sbjct: 517 GGCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAACSHSGMVEEGLMIFDFMCKELNF 576

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
             ++  +  +VD+  + G++ EA    D+M  +          G  + G   +  GL   
Sbjct: 577 VPSMKHYACMVDLLARAGNLQEALDFIDKMPVQP---------GVGVFGAFLHGCGLHSN 627

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
             F  V                   ++R   LH      +  C  ++ + L     +  +
Sbjct: 628 FDFGEVA------------------IRRMLELHP-----DQACYYVLISNLYASDGRWGM 664

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE--LFRQMLVEVVEPNDATLNSLL 421
           VK   ++  +    K VP  +++   V+N      ++  L+  + +    P    L+ +L
Sbjct: 665 VKEVREMIKQRGLNK-VPGVSLVEMDVNNTTHVNVLQSHLYITLFLRFFTPTFHPLSQIL 723

Query: 422 PAYAILAD----LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           P           L   + IH ++ ++G      ++T LI  Y     L   H++ +    
Sbjct: 724 PTSKTSLQGHLSLPHLLQIHAHIFQFGAHQHNLIATRLIGHYISQIDLCVFHQLHNPNNF 783

Query: 478 KDKDIV-------------VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
              DI+              W  +I GY   G  E    + ++ +  G+   E
Sbjct: 784 PFNDIIRFLAQKAYFLFVICWISLITGYAQSGQSEVLHVMIRQNIDDGMSARE 836


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/615 (36%), Positives = 338/615 (54%), Gaps = 8/615 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G ++  R +FD +    +  YN +++ Y+  G  H ++ ++  MLR     P+ YT+P V
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRF-RVAPNKYTFPFV 106

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +KAC+ L   + G  +H      G   D FV   LI +Y+       AR VF  M    V
Sbjct: 107 LKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDV 166

Query: 178 VSWNTLISGYFKNAYAKEALV-VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V+WN +++GY  +     A+  + D     G+ P+ +++VS+LP       +  G  IH 
Sbjct: 167 VAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHA 226

Query: 237 LVAGGRLGKN---IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
                 L +N   +    AL+DMY KC  +  A  VF  M  R+ VTW+++I G+ L   
Sbjct: 227 YCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDR 286

Query: 294 VRNALGLFQLMQFEGVRPNSLT-IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
           +  A  LF+ M  EG+   S T + S L  C+SL  L  G  LHA   K  +  ++    
Sbjct: 287 MTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASN 346

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           +L+ MYAK  L+  +   F   + K T+ + A+L+GCV NG A +A  +F++M    +EP
Sbjct: 347 SLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEP 406

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           + AT+ SL+PA + LA LQ     H  +I  G      +   LID+Y+KCG ++ + ++F
Sbjct: 407 DIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVF 466

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
            ++P +D  +V W+ +IAGYG+HG G+ A +LF  M   G  P++VTF   + ACSH GL
Sbjct: 467 DKMPARD--VVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGL 524

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           + EG   F+ M   +    R +HY C+VDLL R G LDEAY  I++MPLK    VWGALL
Sbjct: 525 VTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALL 584

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
           GAC IH N++LG+  ++ + +L PE  GN+VLLS ++SA  R+ +A  VR +   KG +K
Sbjct: 585 GACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKK 644

Query: 653 APAHSLIEVRNILTA 667
           +P +S IE+   L A
Sbjct: 645 SPGYSWIEINGSLHA 659



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/458 (29%), Positives = 228/458 (49%), Gaps = 21/458 (4%)

Query: 153 IAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDC 212
           +  +++ G++  AR+VFD +      ++N LI  Y        A+ ++  ML+  V P+ 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 213 ASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR 272
            +   VL AC  L ++  GR IH   A   L  ++    AL+D+Y++C     AR VF +
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 273 MSERDVVTWTSMINGYALNGDVRNALG-LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKR 331
           M  RDVV W +M+ GYA +G   +A+  L  +    G+RPN+ T+ SLL   +    L +
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 332 GRSLHAWTIKQNLEC---EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           G S+HA+ ++  LE    +V++ TAL+DMYAKC  +  + +VF     +  V W+A++ G
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGG 280

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDAT-LNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
            V      +A  LF+ MLVE +    AT + S L   A LADL     +H  + + G  +
Sbjct: 281 FVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHA 340

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            +  S  L+ +Y+K G +  A   F EI +  KD + +  +++G   +G  E A  +FK+
Sbjct: 341 DLTASNSLLSMYAKAGLINEATMFFDEIAV--KDTISYGALLSGCVQNGKAEEAFLVFKK 398

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEG------LDLFNFMLENHQTCSRADHYTCIVD 561
           M    ++P+  T  S + ACSH   L  G      + +    LE    C+       ++D
Sbjct: 399 MQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALET-SICN------SLID 451

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           +  + G++D +  +   MP +     W  ++    IHG
Sbjct: 452 MYAKCGKIDLSRQVFDKMPARDV-VSWNTMIAGYGIHG 488



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 183/365 (50%), Gaps = 13/365 (3%)

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
           K+   W   ++ ++  G +  AR VFDR+   D   + ++I  Y+  G    A+ L++ M
Sbjct: 32  KDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSM 91

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
               V PN  T   +L ACS+L  L+ GR++HA      L  ++ V TALID+Y +C   
Sbjct: 92  LRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARF 151

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE-VVEPNDATLNSLLPA 423
             +  VFA+   +  V WNA+LAG  ++G+   A+     M     + PN +TL SLLP 
Sbjct: 152 GPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPL 211

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVE---VSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
            A    L Q  +IH Y +R       E   + T L+D+Y+KC  L  A ++F  +P+++ 
Sbjct: 212 LAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND 271

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ-PNEVTFTSALHACSHGGLLDEGLDL 539
             V WS +I G+ +      A +LFK+M+  G+   +  +  SAL  C+    L  G  L
Sbjct: 272 --VTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQL 329

Query: 540 FNFMLEN--HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
              + ++  H   + ++    ++ +  +AG ++EA      + +K T + +GALL  CV 
Sbjct: 330 HALIAKSGIHADLTASN---SLLSMYAKAGLINEATMFFDEIAVKDTIS-YGALLSGCVQ 385

Query: 598 HGNVE 602
           +G  E
Sbjct: 386 NGKAE 390



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 134/272 (49%), Gaps = 17/272 (6%)

Query: 34  QLHAFIITSGPLFTHLRSS--LVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           QLHA I  SG +   L +S  L+  Y   G ++   + FDE++ + +  Y  ++    QN
Sbjct: 328 QLHALIAKSG-IHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQN 386

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G + ++  +F  M +     PD  T   +I AC+ LA  + G   HG V+I G  ++T +
Sbjct: 387 GKAEEAFLVFKKM-QACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSI 445

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N LI MY   G++  +R+VFD M    VVSWNT+I+GY  +   KEA  +F  M   G 
Sbjct: 446 CNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGF 505

Query: 209 EPDCASVVSVLPACGYLKEIEMGR-----MIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
            PD  + + ++ AC +   +  G+     M H+     R+   I     +VD+  + G +
Sbjct: 506 APDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYI----CMVDLLARGGLL 561

Query: 264 NEARLVFDRMS-ERDVVTWTSMINGYALNGDV 294
           +EA      M  + DV  W +++    ++ ++
Sbjct: 562 DEAYQFIQSMPLKADVRVWGALLGACRIHKNI 593


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 228/655 (34%), Positives = 361/655 (55%), Gaps = 13/655 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAY---GHVSNVRILFDEMSERS 74
           L++ +     +   +Q+H  ++  G L    + +SL+  Y   G V +   +F++M E  
Sbjct: 115 LIKAFGGLCDVYKGRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVD 174

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGML-RLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
              +NT++  + ++     SL  F  M+   G Y P+       I +C+ L     G  +
Sbjct: 175 LVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIY-PNRVACVSSILSCSSLQSLTHGREI 233

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE-----HSVVSWNTLISGYF 188
           HG V+ +G D++ ++ + LI MYM  G +K A  +F+++ +      + V WN +ISGY 
Sbjct: 234 HGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYV 293

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
            N    +AL++F  M+  G++PD +++VS+   C    +I  G+ IH L+    L  NI 
Sbjct: 294 SNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIR 353

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
              AL+DMY+KCG +     +F R    +++ W+++I+  A +G    AL LF   + E 
Sbjct: 354 VETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMED 413

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
              +S  + ++L ACSSL     G  +H    K     +V V +AL+D+YAKC  +  S 
Sbjct: 414 GLADSGILVAVLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSK 473

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           +VF R S+K  V WNA+++G   +  A +A++ FR M +E + PN  T+  +L   A L+
Sbjct: 474 KVFLRLSQKDLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAHLS 533

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            +     +H YLIR G  S V VS  LI  Y+KCG + S+   F ++P  +++ V W+ I
Sbjct: 534 VMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSLYTFEKMP--ERNDVSWNSI 591

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           I G GMH   +  + LF +MV SG++P+ VTFT+ L ACSH G +DEG   F  M+E+  
Sbjct: 592 ILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVEDFN 651

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAA 608
              + + YTC+VDLLGRAG L++AYDLI  MP  P   +WG+LLG+C  HG+  L E+ A
Sbjct: 652 LKPQLEQYTCMVDLLGRAGHLNQAYDLIMAMPCTPDDRIWGSLLGSCKNHGDEILAEIVA 711

Query: 609 KWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
             +F+L P + G  VLL+ LY  + + ++   VR  + + GL+K P  S IEV N
Sbjct: 712 NHIFKLVPSSVGYRVLLANLYENLGKGREGSKVRSEIKDMGLKKKPGCSWIEVDN 766


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/520 (40%), Positives = 316/520 (60%), Gaps = 8/520 (1%)

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
           F M  F+  CL     +FG+V  A K F  + E  ++ WN +I GY +       + ++ 
Sbjct: 20  FLMIKFINACL-----HFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYM 74

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
            M  S V P+C + + VL ACG      +G+ IH        G N+   N+LV MY K G
Sbjct: 75  DMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFG 134

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
            ++ AR+VFD++ +R VV+WTS+I+GY  NGD   AL +F+ M+   V+P+ + + S+++
Sbjct: 135 QISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMT 194

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
           A +++  L +G+S+H    K  LE E  +  +L  MYAK  LV+++   F R  K   + 
Sbjct: 195 AYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLIL 254

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           WNA+++G  +NG   +A++LFR+M+ + +  +  T+ S + A A +  L+ A  +  Y+ 
Sbjct: 255 WNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYIS 314

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           +  +     V+TGLID+Y+KCGS+  A  +F  +   DKD+V+WSV+I GYG+HGHG+ A
Sbjct: 315 KSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVA--DKDVVLWSVMIMGYGLHGHGQEA 372

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561
           + L+ EM Q+GV PN+ TF   L AC + GL+ EG +LF+ M  +H       HY+C+VD
Sbjct: 373 ICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM-PDHGIEPHHQHYSCVVD 431

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGN 621
           LLGRAG L++AYD I +MP+KP  +VWGALL AC IH  V LGE+AA+ LF L+P N G+
Sbjct: 432 LLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGH 491

Query: 622 YVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           YV LS LY++   W    NVR +M +KGL K   HS IE+
Sbjct: 492 YVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEI 531



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 138/439 (31%), Positives = 233/439 (53%), Gaps = 2/439 (0%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +G V+     F E+SE    L+N ++K Y Q       ++M++ M ++ + +P+ +T+  
Sbjct: 32  FGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDM-QISQVHPNCFTFLY 90

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           V+KAC   +   +G  +HG+    GF  + FV N L++MY  FG++  AR VFD + + +
Sbjct: 91  VLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRT 150

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           VVSW ++ISGY +N    EAL VF  M +  V+PD  ++VSV+ A   ++++  G+ IH 
Sbjct: 151 VVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHG 210

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
           LV    L        +L  MY K G V  AR  F+RM + +++ W +MI+GYA NG    
Sbjct: 211 LVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEE 270

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A+ LF+ M  + +R +S+T+ S + A + +  L+  R L  +  K     +  V T LID
Sbjct: 271 AIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLID 330

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MYAKC  + L+  VF R + K  V W+ ++ G   +G  ++A+ L+ +M    V PND T
Sbjct: 331 MYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGT 390

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
              LL A      +++   +   +  +G     +  + ++D+  + G L  A+     +P
Sbjct: 391 FIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMP 450

Query: 477 IKDKDIVVWSVIIAGYGMH 495
           IK   + VW  +++   +H
Sbjct: 451 IK-PGVSVWGALLSACKIH 468



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 170/339 (50%), Gaps = 2/339 (0%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           S+   +G +S  RI+FD++ +R+   + +++  Y QNG   ++L +F  M R     PD 
Sbjct: 128 SMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEM-RQCNVKPDW 186

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
                V+ A T++     G ++HG V   G + +  +   L  MY   G V+ AR  F+ 
Sbjct: 187 IALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNR 246

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M + +++ WN +ISGY  N Y +EA+ +F  M+   +  D  ++ S + A   +  +E+ 
Sbjct: 247 MEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELA 306

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           R +   ++      +      L+DMY KCGS+  AR VFDR++++DVV W+ MI GY L+
Sbjct: 307 RWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLH 366

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G  + A+ L+  M+  GV PN  T   LL+AC +   +K G  L        +E      
Sbjct: 367 GHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHY 426

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVP-WNAILAGC 389
           + ++D+  +   +  ++        K  V  W A+L+ C
Sbjct: 427 SCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSAC 465


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/533 (37%), Positives = 311/533 (58%), Gaps = 3/533 (0%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G+ +HG ++  GF     V N LI+ Y     ++ A  VFD M +  ++SWN++I G   
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N    +A+ +F  M   G E D  +++SV+PAC       +G ++H       L    + 
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
            NAL+DMY  C        +F  M +++VV+WT+MI  Y   G      GLFQ M  EG+
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGI 182

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
           RP+   I S L A +    LK G+S+H + I+  +E  + V  AL++MY KC  ++ +  
Sbjct: 183 RPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARF 242

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           +F   +KK T+ WN ++ G   + LA +A  LF +ML+++  PN  T+  +LPA A L+ 
Sbjct: 243 IFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQL-RPNAVTMACILPAAASLSS 301

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L++   +H Y +R G+L    V+  L+D+Y KCG+L  A ++F    + +K+++ W+++I
Sbjct: 302 LERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFD--MLTNKNLISWTIMI 359

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           AGYGMHG G  A++LF++M  SG+QP+  +F++ L+ACSH GL DEG   FN M   H+ 
Sbjct: 360 AGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRI 419

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
             +  HY C+VDLL   G L EAY+ I TMP++P  ++W +LL  C IH NV+L E  A+
Sbjct: 420 EPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAE 479

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
            +FELEPEN G YVLL+ +Y+   RW+    +++ +  +GLR+    S IEVR
Sbjct: 480 MVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVR 532



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 231/446 (51%), Gaps = 22/446 (4%)

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           + +  ++FDEM +R    +N+++   A NG    ++++F+ M   G+   D+ T   V+ 
Sbjct: 35  IEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQ-ELDSTTLLSVMP 93

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           AC    +  +G  +HG  + TG   +T +GN L+ MY N  + ++  K+F  M + +VVS
Sbjct: 94  ACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVS 153

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           W  +I+ Y +  +  +   +F  M   G+ PD  ++ S L A    + ++ G+ +H    
Sbjct: 154 WTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAI 213

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
              + + +   NAL++MYVKCG + EAR +FD ++++D ++W ++I GY+ +     A  
Sbjct: 214 RNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFT 273

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           LF  M  + +RPN++T+  +L A +SL  L+RGR +HA+ +++    +  V  AL+DMY 
Sbjct: 274 LFNEMLLQ-LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYV 332

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           KC  + L+ ++F   + K  + W  ++AG   +G  R A+ LF QM    ++P+  + ++
Sbjct: 333 KCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSA 392

Query: 420 LLPA----------YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           +L A          +     ++    I   L  Y           ++D+    G+L+ A+
Sbjct: 393 ILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYAC---------MVDLLCHTGNLKEAY 443

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMH 495
           +    +PI + D  +W  ++ G  +H
Sbjct: 444 EFIETMPI-EPDSSIWVSLLRGCRIH 468



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 146/287 (50%), Gaps = 10/287 (3%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSG-----PLFTHLRSSLVRAYGHVSNVRILFDEM 70
           +   +  +A  +S+   K +H + I +G     P+   L    V+  G++   R +FD +
Sbjct: 189 ITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKC-GYMEEARFIFDHV 247

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
           +++ +  +NT++  Y+++  ++++  +F  ML   +  P+  T   ++ A   L+  + G
Sbjct: 248 TKKDTISWNTLIGGYSRSNLANEAFTLFNEMLL--QLRPNAVTMACILPAAASLSSLERG 305

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
             +H   +  G+  D FV N L+ MY+  G +  AR++FD +   +++SW  +I+GY  +
Sbjct: 306 REMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMH 365

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAA 249
              ++A+ +F+ M  SG++PD  S  ++L AC +    + G R  + +    R+   +  
Sbjct: 366 GRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKH 425

Query: 250 WNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVR 295
           +  +VD+    G++ EA    + M  E D   W S++ G  ++ +V+
Sbjct: 426 YACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVK 472


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/644 (33%), Positives = 357/644 (55%), Gaps = 12/644 (1%)

Query: 24  AATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFL 77
           A  K++    +L + I+ +G    LF  + ++L+  +   G V +   +F+ +  R    
Sbjct: 216 ADAKNVDKGGELFSLILNAGWDTDLF--VGTALINMHIKCGGVDDALKVFNNLPRRDLIT 273

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           + +++   A++     +  +F  M   G   PD   +  ++KAC      + G  +H R+
Sbjct: 274 WTSMITGLARHRQFKQACNLFQVMEEEG-VQPDKVAFVSLLKACNHPEALEQGKRVHARM 332

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
              G D + +VG  L++MY   G ++ A +VF+ +   +VVSW  +I+G+ ++   +EA 
Sbjct: 333 KEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAF 392

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
           + F+ M++SG+EP+  + +S+L AC     ++ GR IH+ +       +     AL+ MY
Sbjct: 393 LFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMY 452

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
            KCGS+ +AR VF+R+S+++VV W +MI  Y  +    NA+  FQ +  EG++P+S T  
Sbjct: 453 AKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFT 512

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           S+L+ C S   L+ G+ + +  I+   E ++ +  AL+ M+  C  +  +  +F    ++
Sbjct: 513 SILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPER 572

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V WN I+AG V +G  + A + F+ M    V+P+  T   LL A A    L +   +H
Sbjct: 573 DLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLH 632

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
             +        V V TGLI +Y+KCGS++ AH +F  +P   K++  W+ +I GY  HG 
Sbjct: 633 ALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLP--KKNVYSWTSMITGYAQHGR 690

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
           G+ A+ LF +M Q GV+P+ +TF  AL AC+H GL+ EGL  F  M ++     R +HY 
Sbjct: 691 GKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESM-KDFNIEPRMEHYG 749

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617
           C+VDL GRAG L EA + I  M +KP   +WGALLGAC +H +VEL E  A+   EL+P 
Sbjct: 750 CMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPN 809

Query: 618 NPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           + G YV+LS +Y+A   WK+   +R VM ++G+ K P  S IEV
Sbjct: 810 DDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEV 853



 Score =  312 bits (800), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 180/566 (31%), Positives = 304/566 (53%), Gaps = 8/566 (1%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           S+    G+ ++ + +FDEM ++  + +N ++  Y Q+    ++ ++   M++ G   PD 
Sbjct: 147 SMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDG-VKPDK 205

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
           YT+  ++ AC D      G  L   +L  G+D D FVG  LI M++  G V  A KVF+ 
Sbjct: 206 YTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNN 265

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           +    +++W ++I+G  ++   K+A  +F  M + GV+PD  + VS+L AC + + +E G
Sbjct: 266 LPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQG 325

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           + +H  +    L   I    AL+ MY KCGS+ +A  VF+ +  R+VV+WT+MI G+A +
Sbjct: 326 KRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQH 385

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G +  A   F  M   G+ PN +T  S+L ACS    LK+GR +H   IK     +  V 
Sbjct: 386 GRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR 445

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
           TAL+ MYAKC  +  +  VF R SK+  V WNA++   V +     AV  F+ +L E ++
Sbjct: 446 TALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIK 505

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           P+ +T  S+L        L+    +   +IR GF S + +   L+ ++  CG L SA  +
Sbjct: 506 PDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNL 565

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F+++P  ++D+V W+ IIAG+  HG  + A   FK M +SGV+P+++TFT  L+AC+   
Sbjct: 566 FNDMP--ERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPE 623

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
            L EG  L   + E    C      T ++ +  + G +D+A+ +   +P K  ++ W ++
Sbjct: 624 ALTEGRRLHALITEAALDCDVVVG-TGLISMYTKCGSIDDAHLVFHNLPKKNVYS-WTSM 681

Query: 592 LGACVIHGNVELGEVAAKWLFELEPE 617
           +     HG    G+ A +   +++ E
Sbjct: 682 ITGYAQHGR---GKEALELFCQMQQE 704



 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 152/489 (31%), Positives = 262/489 (53%), Gaps = 8/489 (1%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           TY  +++ C        G  +H  +  +    D F+ N LI+MY   G   +A+++FD M
Sbjct: 106 TYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEM 165

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
            +  V SWN L+ GY ++   +EA  + + M++ GV+PD  + V +L AC   K ++ G 
Sbjct: 166 PDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGG 225

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            +  L+       ++    AL++M++KCG V++A  VF+ +  RD++TWTSMI G A + 
Sbjct: 226 ELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHR 285

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
             + A  LFQ+M+ EGV+P+ +   SLL AC+    L++G+ +HA   +  L+ E+ V T
Sbjct: 286 QFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGT 345

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           AL+ MY KC  ++ + +VF     +  V W A++AG   +G   +A   F +M+   +EP
Sbjct: 346 ALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEP 405

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           N  T  S+L A +  + L+Q   IH  +I+ G+++   V T L+ +Y+KCGSL  A  +F
Sbjct: 406 NRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVF 465

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
               I  +++V W+ +I  Y  H   + AV+ F+ +++ G++P+  TFTS L+ C     
Sbjct: 466 ER--ISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDA 523

Query: 533 LDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           L+ G  + + ++   +    +D +    +V +    G L  A +L   MP +     W  
Sbjct: 524 LELGKWVQSLII---RAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDL-VSWNT 579

Query: 591 LLGACVIHG 599
           ++   V HG
Sbjct: 580 IIAGFVQHG 588



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 169/369 (45%), Gaps = 14/369 (3%)

Query: 282 TSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
            + +N  +  G +  A+ +   +    ++ +  T  SLL  C     L  G  +H     
Sbjct: 73  NAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKF 132

Query: 342 QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVEL 401
             ++ ++ +   LI MYAKC     + Q+F     K    WN +L G V +    +A  L
Sbjct: 133 SKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRL 192

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
             QM+ + V+P+  T   +L A A   ++ +   +   ++  G+ + + V T LI+++ K
Sbjct: 193 HEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIK 252

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
           CG ++ A K+F+ +P   +D++ W+ +I G   H   + A +LF+ M + GVQP++V F 
Sbjct: 253 CGGVDDALKVFNNLP--RRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFV 310

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTM 579
           S L AC+H   L++G  +   M E        + Y  T ++ +  + G +++A ++   +
Sbjct: 311 SLLKACNHPEALEQGKRVHARMKE---VGLDTEIYVGTALLSMYTKCGSMEDALEVFNLV 367

Query: 580 PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE--LEPENPGNYVLLSKLYSAVRRWKD 637
             +     W A++     HG +E   +    + E  +EP    N V    +  A  R   
Sbjct: 368 KGRNV-VSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEP----NRVTFMSILGACSRPSA 422

Query: 638 AENVRDVMD 646
            +  R + D
Sbjct: 423 LKQGRQIHD 431


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/634 (35%), Positives = 355/634 (55%), Gaps = 8/634 (1%)

Query: 34  QLHAFIITSGPLF-THLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           QLH F++  G +   ++ +SL+  Y   G+V   R++FD +  +++  +  ++  YA+ G
Sbjct: 175 QLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLG 234

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
            S  SLK+F   +R G+  PD Y    V+ AC+ L + + G  +HG VL  GFDMD  V 
Sbjct: 235 RSEVSLKLF-NQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVV 293

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N +I  Y+   +VK  RK+F+ + +  VVSW T+I+G  +N++  +A+ +F  M++ G +
Sbjct: 294 NGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWK 353

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PD     SVL +CG L+ ++ GR +H       +  +    N L+DMY KC S+  AR V
Sbjct: 354 PDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKV 413

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           FD ++  +VV++ +MI GY+    +  AL LF+ M+     P  LT  SLL   SSL+ L
Sbjct: 414 FDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLL 473

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           +    +H   IK  +  +    +ALID+Y+KC+ V  +  VF     +  V WNA+ +G 
Sbjct: 474 ELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGY 533

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
                  ++++L++ + +  ++PN+ T  +++ A + +A L+     H  +I+ G     
Sbjct: 534 SQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDP 593

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            V+  L+D+Y+KCGS+E +HK FS      +DI  W+ +I+ Y  HG    A+ +F+ M+
Sbjct: 594 FVTNSLVDMYAKCGSIEESHKAFSST--NQRDIACWNSMISTYAQHGDAAKALEVFERMI 651

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
             GV+PN VTF   L ACSH GLLD G   F  M          DHY C+V LLGRAG++
Sbjct: 652 MEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESM-SKFGIEPGIDHYACMVSLLGRAGKI 710

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629
            EA + ++ MP+KP   VW +LL AC + G+VELG  AA+     +P + G+Y+LLS ++
Sbjct: 711 YEAKEFVKKMPIKPAAVVWRSLLSACRVSGHVELGTYAAEMAISCDPADSGSYILLSNIF 770

Query: 630 SAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           ++   W     VR+ MD   + K P  S IEV N
Sbjct: 771 ASKGMWASVRMVREKMDMSRVVKEPGWSWIEVNN 804



 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 193/611 (31%), Positives = 325/611 (53%), Gaps = 25/611 (4%)

Query: 33  KQLHAFIITSGPLFTH---LRSSLVRAYGHV---SNVRILFDEMSERSSFLYNTVMKMYA 86
           K++HA I+  G    H   L ++L+ AY  +   S+ + LFD M  R+   +++++ MY 
Sbjct: 71  KKIHAHIVVLG-FHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYT 129

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           Q+G S ++L +F   +R     P+ Y    V++ACT L      + LHG V+  GF  D 
Sbjct: 130 QHGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDV 189

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
           +VG  LI  Y   G V  AR +FD +   + V+W  +I+GY K   ++ +L +F+ M + 
Sbjct: 190 YVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREG 249

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
            V PD   + SVL AC  L+ +E G+ IH  V       +++  N ++D Y+KC  V   
Sbjct: 250 DVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTG 309

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
           R +F+R+ ++DVV+WT+MI G   N    +A+ LF  M  +G +P++    S+L++C SL
Sbjct: 310 RKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSL 369

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             L++GR +HA+ IK N++ +  V+  LIDMYAKC+ +  + +VF   +    V +NA++
Sbjct: 370 QALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMI 429

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
            G        +A++LFR+M + +  P   T  SLL   + L  L+ +  IHC +I++G  
Sbjct: 430 EGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVS 489

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
                 + LID+YSKC  +  A  +F E  I D+DIVVW+ + +GY      E ++ L+K
Sbjct: 490 LDSFAGSALIDVYSKCSCVGDARLVFEE--IYDRDIVVWNAMFSGYSQQLENEESLKLYK 547

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM----LENHQTCSRADHYTCIVDL 562
           ++  S ++PNE TF + + A S+   L  G    N +    L++    + +     +VD+
Sbjct: 548 DLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNS-----LVDM 602

Query: 563 LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG-EVAAKWLFE-LEPENPG 620
             + G ++E++    +   +   A W +++     HG+     EV  + + E ++P    
Sbjct: 603 YAKCGSIEESHKAFSSTNQRDI-ACWNSMISTYAQHGDAAKALEVFERMIMEGVKP---- 657

Query: 621 NYVLLSKLYSA 631
           NYV    L SA
Sbjct: 658 NYVTFVGLLSA 668



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 184/375 (49%), Gaps = 6/375 (1%)

Query: 24  AATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH---VSNVRILFDEMSERSSFLYN 79
            + +++   +Q+HA+ I         +++ L+  Y     ++N R +FD ++  +   YN
Sbjct: 367 GSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYN 426

Query: 80  TVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLI 139
            +++ Y++     ++L +F  M RL    P   T+  ++   + L   +L   +H  ++ 
Sbjct: 427 AMIEGYSRQDKLVEALDLFREM-RLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIK 485

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
            G  +D+F G+ LI +Y     V  AR VF+ +++  +V WN + SGY +    +E+L +
Sbjct: 486 FGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKL 545

Query: 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVK 259
           +  +  S ++P+  +  +V+ A   +  +  G+  H  V    L  +    N+LVDMY K
Sbjct: 546 YKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAK 605

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
           CGS+ E+   F   ++RD+  W SMI+ YA +GD   AL +F+ M  EGV+PN +T   L
Sbjct: 606 CGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGL 665

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKK 378
           LSACS    L  G        K  +E  +     ++ +  +   +  + +   +   K  
Sbjct: 666 LSACSHAGLLDLGFHHFESMSKFGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKMPIKPA 725

Query: 379 TVPWNAILAGCVHNG 393
            V W ++L+ C  +G
Sbjct: 726 AVVWRSLLSACRVSG 740


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/619 (35%), Positives = 338/619 (54%), Gaps = 19/619 (3%)

Query: 56  AYGHVSNVRILFDEM----SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
            +G V   R +FDE      ER++  +NT++  Y +N  S D++ +F  M+  GE  P+ 
Sbjct: 147 GFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGE-RPNE 205

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
           + +  V+ ACT     + G  +HG V+ TG++ D F  N L+ MY   G+++ A  VF+ 
Sbjct: 206 FGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEK 265

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M    VVSWN  ISG   + +   AL +   M  SG+ P+  ++ SVL AC       +G
Sbjct: 266 MPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLG 325

Query: 232 RMIHELVAGGRLGKNIAAWN-----ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
           R IH     G + K +A ++      LVDMY K G +++AR VFD M  RD++ W ++I+
Sbjct: 326 RQIH-----GFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALIS 380

Query: 287 GYALNGDVRNALGLFQLMQFEGVR--PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           G + +G     L LF  M+ EG+    N  T+ S+L + +S   +   R +HA   K  L
Sbjct: 381 GCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGL 440

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
             +  V   LID Y KC  +  + +VF  +     +    ++           A++LF Q
Sbjct: 441 LSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQ 500

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           ML + +EP+   L+SLL A   L+  +Q   +H +LI+  F S V     L+  Y+KCGS
Sbjct: 501 MLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGS 560

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           +E A   FS +P  ++ IV WS +I G   HGHG+ A+ LF  M+  GV PN +T TS L
Sbjct: 561 IEDADMAFSGLP--ERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVL 618

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            AC+H GL+D+    F  M E        +HY C++D+LGRAG+L++A +L+  MP +  
Sbjct: 619 SACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQAN 678

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
            AVWGALLGA  +H + ELG +AA+ LF LEPE  G +VLL+  Y++   W +   VR +
Sbjct: 679 AAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKL 738

Query: 645 MDEKGLRKAPAHSLIEVRN 663
           M +  ++K PA S +E+++
Sbjct: 739 MKDSNVKKEPAMSWVEIKD 757



 Score =  278 bits (710), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 186/632 (29%), Positives = 311/632 (49%), Gaps = 24/632 (3%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHV---SNVRILF 67
           +T   +   + ++  ++S+     LH+ ++ SG L     + L+  Y      S  R +F
Sbjct: 2   RTPETIGSALARFGTSRSLFAGAHLHSHLLKSG-LLAGFSNHLLTLYSRCRLPSAARAVF 60

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN-YTYPIVIKACTDLAW 126
           DE+ +     +++++  Y+ NG   D+L  F  M   G   P N +  P+V+K   D+  
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMR--GRGVPCNEFALPVVLKCAPDV-- 116

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM----WEHSVVSWNT 182
            + G  +H   + T    D FV N L+A+Y  FG V  AR++FD       E + VSWNT
Sbjct: 117 -RFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNT 175

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           +IS Y KN  + +A+ VF  M+ SG  P+      V+ AC   +++E GR +H  V    
Sbjct: 176 MISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTG 235

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
             K++   NALVDMY K G +  A  VF++M   DVV+W + I+G   +G    AL L  
Sbjct: 236 YEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLL 295

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            M+  G+ PN  T+ S+L AC+       GR +H + +K   + +  V   L+DMYAK  
Sbjct: 296 QMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHG 355

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE--VVEPNDATLNSL 420
            +  + +VF    ++  + WNA+++GC H+G   + + LF +M  E   ++ N  TL S+
Sbjct: 356 FLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASV 415

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L + A    +     +H    + G LS   V  GLID Y KCG L+ A K+F E   +  
Sbjct: 416 LKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKE--SRSD 473

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
           DI+  + ++       HGE A+ LF +M++ G++P+    +S L+AC+     ++G  + 
Sbjct: 474 DIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVH 533

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             +++  Q  S       +V    + G +++A      +P +     W A++G    HG+
Sbjct: 534 AHLIKR-QFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGI-VSWSAMIGGLAQHGH 591

Query: 601 VELGEVAAKWLFELEPENPG-NYVLLSKLYSA 631
              G+ A      +  E    N++ L+ + SA
Sbjct: 592 ---GKRALDLFHRMLDEGVAPNHITLTSVLSA 620


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/653 (34%), Positives = 357/653 (54%), Gaps = 9/653 (1%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAYGH---VSNVRILFDEMSE 72
           I L+   ++++S+A  +++H  I+ S   + T L + ++  YG    + + R +FD M E
Sbjct: 71  ISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPE 130

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           R+   Y +V+  Y+QNG   ++++++L ML+  +  PD + +  +IKAC   +   LG  
Sbjct: 131 RNLVSYTSVITGYSQNGQGAEAIRLYLKMLQ-EDLVPDQFAFGSIIKACASSSDVGLGKQ 189

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           LH +V+           N LIAMY+ F ++  A +VF  +    ++SW+++I+G+ +  +
Sbjct: 190 LHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGF 249

Query: 193 AKEALVVFDWMLKSGV-EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
             EAL     ML  GV  P+     S L AC  L   + G  IH L     L  N  A  
Sbjct: 250 EFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGC 309

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           +L DMY +CG +N AR VFD++   D  +W  +I G A NG    A+ +F  M+  G  P
Sbjct: 310 SLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIP 369

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +++++ SLL A +    L +G  +H++ IK     ++ V  +L+ MY  C+ +   F +F
Sbjct: 370 DAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLF 429

Query: 372 AR-TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
               +   +V WN IL  C+ +    + + LF+ MLV   EP+  T+ +LL     ++ L
Sbjct: 430 EDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSL 489

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
           +    +HCY ++ G      +  GLID+Y+KCGSL  A +IF  +   ++D+V WS +I 
Sbjct: 490 KLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSM--DNRDVVSWSTLIV 547

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           GY   G GE A+ LFKEM  +G++PN VTF   L ACSH GL++EGL L+  M   H   
Sbjct: 548 GYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGIS 607

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
              +H +C+VDLL RAGRL+EA   I  M L+P   VW  LL AC   GNV L + AA+ 
Sbjct: 608 PTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAEN 667

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           + +++P N   +VLL  ++++   W++A  +R  M +  ++K P  S IE+ +
Sbjct: 668 ILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIED 720



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 142/470 (30%), Positives = 238/470 (50%), Gaps = 7/470 (1%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           TY  +I AC+       G  +H  +L +    DT + N +++MY   G ++ AR+VFD M
Sbjct: 69  TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFM 128

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
            E ++VS+ ++I+GY +N    EA+ ++  ML+  + PD  +  S++ AC    ++ +G+
Sbjct: 129 PERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGK 188

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            +H  V       ++ A NAL+ MYV+   +++A  VF  +  +D+++W+S+I G++  G
Sbjct: 189 QLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLG 248

Query: 293 DVRNALG-LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
               AL  L +++ F    PN    GS L ACSSL     G  +H   IK  L    I  
Sbjct: 249 FEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAG 308

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
            +L DMYA+C  +  + +VF +  +  T  WN I+AG  +NG A +AV +F QM      
Sbjct: 309 CSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFI 368

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           P+  +L SLL A      L Q M IH Y+I++GFL+ + V   L+ +Y+ C  L     +
Sbjct: 369 PDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNL 428

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F +    + D V W+ I+     H      + LFK M+ S  +P+ +T  + L  C    
Sbjct: 429 FEDFR-NNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEIS 487

Query: 532 LLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTM 579
            L  G  +  + L   +T    + +    ++D+  + G L +A  +  +M
Sbjct: 488 SLKLGSQVHCYSL---KTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSM 534


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/520 (40%), Positives = 316/520 (60%), Gaps = 8/520 (1%)

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
           F M  F+  CL     +FG+V  A K F  + E  ++ WN +I GY +       + ++ 
Sbjct: 35  FLMIKFINACL-----HFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYM 89

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
            M  S V P+C + + VL ACG      +G+ IH        G N+   N+LV MY K G
Sbjct: 90  DMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFG 149

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
            ++ AR+VFD++ +R VV+WTS+I+GY  NGD   AL +F+ M+   V+P+ + + S+++
Sbjct: 150 QISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMT 209

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
           A +++  L +G+S+H    K  LE E  +  +L  MYAK  LV+++   F R  K   + 
Sbjct: 210 AYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLIL 269

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           WNA+++G  +NG   +A++LFR+M+ + +  +  T+ S + A A +  L+ A  +  Y+ 
Sbjct: 270 WNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYIS 329

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           +  +     V+TGLID+Y+KCGS+  A  +F  +   DKD+V+WSV+I GYG+HGHG+ A
Sbjct: 330 KSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVA--DKDVVLWSVMIMGYGLHGHGQEA 387

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561
           + L+ EM Q+GV PN+ TF   L AC + GL+ EG +LF+ M  +H       HY+C+VD
Sbjct: 388 ICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM-PDHGIEPHHQHYSCVVD 446

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGN 621
           LLGRAG L++AYD I +MP+KP  +VWGALL AC IH  V LGE+AA+ LF L+P N G+
Sbjct: 447 LLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGH 506

Query: 622 YVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           YV LS LY++   W    NVR +M +KGL K   HS IE+
Sbjct: 507 YVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEI 546



 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 138/439 (31%), Positives = 233/439 (53%), Gaps = 2/439 (0%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +G V+     F E+SE    L+N ++K Y Q       ++M++ M ++ + +P+ +T+  
Sbjct: 47  FGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDM-QISQVHPNCFTFLY 105

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           V+KAC   +   +G  +HG+    GF  + FV N L++MY  FG++  AR VFD + + +
Sbjct: 106 VLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRT 165

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           VVSW ++ISGY +N    EAL VF  M +  V+PD  ++VSV+ A   ++++  G+ IH 
Sbjct: 166 VVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHG 225

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
           LV    L        +L  MY K G V  AR  F+RM + +++ W +MI+GYA NG    
Sbjct: 226 LVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEE 285

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A+ LF+ M  + +R +S+T+ S + A + +  L+  R L  +  K     +  V T LID
Sbjct: 286 AIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLID 345

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MYAKC  + L+  VF R + K  V W+ ++ G   +G  ++A+ L+ +M    V PND T
Sbjct: 346 MYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGT 405

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
              LL A      +++   +   +  +G     +  + ++D+  + G L  A+     +P
Sbjct: 406 FIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMP 465

Query: 477 IKDKDIVVWSVIIAGYGMH 495
           IK   + VW  +++   +H
Sbjct: 466 IK-PGVSVWGALLSACKIH 483



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 170/339 (50%), Gaps = 2/339 (0%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           S+   +G +S  RI+FD++ +R+   + +++  Y QNG   ++L +F  M R     PD 
Sbjct: 143 SMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEM-RQCNVKPDW 201

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
                V+ A T++     G ++HG V   G + +  +   L  MY   G V+ AR  F+ 
Sbjct: 202 IALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNR 261

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M + +++ WN +ISGY  N Y +EA+ +F  M+   +  D  ++ S + A   +  +E+ 
Sbjct: 262 MEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELA 321

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           R +   ++      +      L+DMY KCGS+  AR VFDR++++DVV W+ MI GY L+
Sbjct: 322 RWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLH 381

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G  + A+ L+  M+  GV PN  T   LL+AC +   +K G  L        +E      
Sbjct: 382 GHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHY 441

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVP-WNAILAGC 389
           + ++D+  +   +  ++        K  V  W A+L+ C
Sbjct: 442 SCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSAC 480


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 231/639 (36%), Positives = 357/639 (55%), Gaps = 14/639 (2%)

Query: 33   KQLHAFIITSGPLF---THLRSSLVRAYGHVSNVR---ILFDEMSERSSFL-YNTVMKMY 85
            +Q+H +II +  +F    +L ++L+  Y   S       LF ++  RS+ + +N ++  +
Sbjct: 567  RQIHGYIIRN--MFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGF 624

Query: 86   AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
             +NG    SL+++  + +       + ++     AC+       G  +H  V+   F  D
Sbjct: 625  VENGMWEKSLELY-SLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDD 683

Query: 146  TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
             +V   L+ MY   G V+ A+KVFD + +  V   N +IS +  N  A +AL +++ M K
Sbjct: 684  PYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKM-K 742

Query: 206  SGVEP-DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
            +G  P D  ++ S+L  C  +   + GR +H  V    +  N+A  +AL+ MY KCGS  
Sbjct: 743  AGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTE 802

Query: 265  EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
            +A  VF  M ERDVV W SMI G+  N   ++AL LF+ M+ EGV+ +S  + S++SA  
Sbjct: 803  DADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGL 862

Query: 325  SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
             L  ++ G  +H + IK+ LE +V V  +L+DMY+K    + +  VF+    K  V WN+
Sbjct: 863  GLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNS 922

Query: 385  ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
            +++    NGL   ++ L  Q+L      +  ++ ++L A + +A L +   +H Y IR  
Sbjct: 923  MISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQ 982

Query: 445  FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
              S ++V   LID+Y KCG L+ A  IF  +P   +++V W+ +IAGYG HG+ E AV L
Sbjct: 983  IPSDLQVENALIDMYVKCGCLKYAQLIFENMP--RRNLVTWNSMIAGYGSHGNCEEAVRL 1040

Query: 505  FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
            FKEM +S   P+EVTF + + +CSH G+++EGL+LF  M   +    R +HY  +VDLLG
Sbjct: 1041 FKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLG 1100

Query: 565  RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
            RAGRLD+AY  IR MP+    +VW  LL AC  H N+ELGE+ A  L ++EP    NYV 
Sbjct: 1101 RAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVP 1160

Query: 625  LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            L  LY  V  W  A N+R  M  +GL+K+P  S IEV+N
Sbjct: 1161 LLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKN 1199



 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 174/607 (28%), Positives = 304/607 (50%), Gaps = 15/607 (2%)

Query: 6    HHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVS 61
            H  L         L++  A+  ++   + +HA I+T G     ++ +SL+  Y   G + 
Sbjct: 434  HSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLG 493

Query: 62   NVRILFDEMSE-RSS----FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
            +   +FD+MSE R S     ++N V+  Y + G   + L  F  M  LG   PD Y+  I
Sbjct: 494  SALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELG-IRPDGYSLSI 552

Query: 117  VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
            V+  C  L+W   G  +HG ++   F+ D ++   LI MY +      A  +F  +   S
Sbjct: 553  VLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRS 612

Query: 177  -VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
             +V+WN +I G+ +N   +++L ++        +   AS      AC + + ++ GR +H
Sbjct: 613  NIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVH 672

Query: 236  ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
              V       +     +L+ MY K GSV +A+ VFD++ +++V    +MI+ +  NG   
Sbjct: 673  CDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAY 732

Query: 296  NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            +ALGL+  M+      +S TI SLLS CS +     GR++HA  IK++++  V +++AL+
Sbjct: 733  DALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALL 792

Query: 356  DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
             MY KC   + +  VF    ++  V W +++AG   N   + A++LFR M  E V+ +  
Sbjct: 793  TMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSD 852

Query: 416  TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
             + S++ A   L +++    IH + I+ G  S V V+  L+D+YSK G  ESA  +FS +
Sbjct: 853  VMTSVISAGLGLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSM 912

Query: 476  PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
            P  +K++V W+ +I+ Y  +G  E +++L  +++Q G   + V+ T+ L A S    L +
Sbjct: 913  P--NKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLK 970

Query: 536  GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
            G  L  + +   Q  S       ++D+  + G L  A  +   MP +     W +++   
Sbjct: 971  GKTLHAYQIR-LQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRR-NLVTWNSMIAGY 1028

Query: 596  VIHGNVE 602
              HGN E
Sbjct: 1029 GSHGNCE 1035



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 150/320 (46%), Gaps = 16/320 (5%)

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           I      G    AL L        +     T  SLL  C+SL  L  GR++HA  +   L
Sbjct: 413 IKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGL 472

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK-TVP----WNAILAGCVHNGLARKAV 399
           + +  + T+LI+MY KC L+  + QVF + S+ + + P    WN ++ G    G   + +
Sbjct: 473 QSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGL 532

Query: 400 ELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459
             F +M    + P+  +L+ +L     L+       IH Y+IR  F     + T LI +Y
Sbjct: 533 AQFCRMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIRNMFEGDPYLETALIGMY 592

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
           S C     A  +F ++  +  +IV W+V+I G+  +G  E ++ L+        +    +
Sbjct: 593 SSCSRPMEAWSLFGKLENRS-NIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSAS 651

Query: 520 FTSALHACSHGGLLDEGLDLFNFMLE-NHQTCSRADHYTC--IVDLLGRAGRLDEA---Y 573
           FT A  ACSHG +LD G  +   +++ N Q     D Y C  ++ +  ++G +++A   +
Sbjct: 652 FTGAFTACSHGEVLDFGRQVHCDVIKMNFQD----DPYVCTSLLTMYAKSGSVEDAKKVF 707

Query: 574 DLIRTMPLKPTHAVWGALLG 593
           D +    ++  +A+  A +G
Sbjct: 708 DQVLDKEVELRNAMISAFIG 727


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/615 (36%), Positives = 338/615 (54%), Gaps = 8/615 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G ++  R +FD +    +  YN +++ Y+  G  H ++ ++  MLR     P+ YT+P V
Sbjct: 48  GQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRF-RVAPNKYTFPFV 106

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +KAC+ L   + G  +H      G   D FV   LI +Y+       AR VF  M    V
Sbjct: 107 LKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDV 166

Query: 178 VSWNTLISGYFKNAYAKEALV-VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V+WN +++GY  +     A+  + D     G+ P+ +++VS+LP       +  G  IH 
Sbjct: 167 VAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHA 226

Query: 237 LVAGGRLGKN---IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
                 L +N   +    AL+DMY KC  +  A  VF  M  R+ VTW+++I G+ L   
Sbjct: 227 YCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDR 286

Query: 294 VRNALGLFQLMQFEGVRPNSLT-IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
           +  A  LF+ M  EG+   S T + S L  C+SL  L  G  LHA   K  +  ++    
Sbjct: 287 MTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASN 346

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           +L+ MYAK  L+  +   F   + K T+ + A+L+GCV NG A +A  +F++M    +EP
Sbjct: 347 SLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEP 406

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           + AT+ SL+PA + LA LQ     H  +I  G      +   LID+Y+KCG ++ + ++F
Sbjct: 407 DIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVF 466

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
            ++P +D  +V W+ +IAGYG+HG G+ A +LF  M   G  P++VTF   + ACSH GL
Sbjct: 467 DKMPARD--VVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGL 524

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           + EG   F+ M   +    R +HY C+VDLL R G LDEAY  I++MPLK    VWGALL
Sbjct: 525 VTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALL 584

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
           GAC IH N++LG+  ++ + +L PE  GN+VLLS ++SA  R+ +A  VR +   KG +K
Sbjct: 585 GACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKK 644

Query: 653 APAHSLIEVRNILTA 667
           +P +S IE+   L A
Sbjct: 645 SPGYSWIEINGSLHA 659



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 137/458 (29%), Positives = 228/458 (49%), Gaps = 21/458 (4%)

Query: 153 IAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDC 212
           +  +++ G++  AR+VFD +      ++N LI  Y        A+ ++  ML+  V P+ 
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 213 ASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR 272
            +   VL AC  L ++  GR IH   A   L  ++    AL+D+Y++C     AR VF +
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 273 MSERDVVTWTSMINGYALNGDVRNALG-LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKR 331
           M  RDVV W +M+ GYA +G   +A+  L  +    G+RPN+ T+ SLL   +    L +
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 332 GRSLHAWTIKQNLEC---EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           G S+HA+ ++  LE    +V++ TAL+DMYAKC  +  + +VF     +  V W+A++ G
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGG 280

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDAT-LNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
            V      +A  LF+ MLVE +    AT + S L   A LADL     +H  + + G  +
Sbjct: 281 FVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHA 340

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            +  S  L+ +Y+K G +  A   F EI +  KD + +  +++G   +G  E A  +FK+
Sbjct: 341 DLTASNSLLSMYAKAGLINEATMFFDEIAV--KDTISYGALLSGCVQNGKAEEAFLVFKK 398

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEG------LDLFNFMLENHQTCSRADHYTCIVD 561
           M    ++P+  T  S + ACSH   L  G      + +    LE    C+       ++D
Sbjct: 399 MQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALET-SICN------SLID 451

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           +  + G++D +  +   MP +     W  ++    IHG
Sbjct: 452 MYAKCGKIDLSRQVFDKMPARDV-VSWNTMIAGYGIHG 488



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/365 (30%), Positives = 183/365 (50%), Gaps = 13/365 (3%)

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
           K+   W   ++ ++  G +  AR VFDR+   D   + ++I  Y+  G    A+ L++ M
Sbjct: 32  KDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSM 91

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
               V PN  T   +L ACS+L  L+ GR++HA      L  ++ V TALID+Y +C   
Sbjct: 92  LRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARF 151

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE-VVEPNDATLNSLLPA 423
             +  VFA+   +  V WNA+LAG  ++G+   A+     M     + PN +TL SLLP 
Sbjct: 152 GPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPL 211

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVE---VSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
            A    L Q  +IH Y +R       E   + T L+D+Y+KC  L  A ++F  +P+++ 
Sbjct: 212 LAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRND 271

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ-PNEVTFTSALHACSHGGLLDEGLDL 539
             V WS +I G+ +      A +LFK+M+  G+   +  +  SAL  C+    L  G  L
Sbjct: 272 --VTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQL 329

Query: 540 FNFMLEN--HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
              + ++  H   + ++    ++ +  +AG ++EA      + +K T + +GALL  CV 
Sbjct: 330 HALIAKSGIHADLTASN---SLLSMYAKAGLINEATMFFDEIAVKDTIS-YGALLSGCVQ 385

Query: 598 HGNVE 602
           +G  E
Sbjct: 386 NGKAE 390



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 134/272 (49%), Gaps = 17/272 (6%)

Query: 34  QLHAFIITSGPLFTHLRSS--LVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           QLHA I  SG +   L +S  L+  Y   G ++   + FDE++ + +  Y  ++    QN
Sbjct: 328 QLHALIAKSG-IHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQN 386

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G + ++  +F  M +     PD  T   +I AC+ LA  + G   HG V+I G  ++T +
Sbjct: 387 GKAEEAFLVFKKM-QACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSI 445

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N LI MY   G++  +R+VFD M    VVSWNT+I+GY  +   KEA  +F  M   G 
Sbjct: 446 CNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGF 505

Query: 209 EPDCASVVSVLPACGYLKEIEMGR-----MIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
            PD  + + ++ AC +   +  G+     M H+     R+   I     +VD+  + G +
Sbjct: 506 APDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYI----CMVDLLARGGLL 561

Query: 264 NEARLVFDRMS-ERDVVTWTSMINGYALNGDV 294
           +EA      M  + DV  W +++    ++ ++
Sbjct: 562 DEAYQFIQSMPLKADVRVWGALLGACRIHKNI 593


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/624 (34%), Positives = 348/624 (55%), Gaps = 6/624 (0%)

Query: 47  THLRSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR 103
           T + ++L+  Y    + R+   +F +M    S  +NT++  +AQ G    +L +F  M +
Sbjct: 178 TFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEM-Q 236

Query: 104 LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163
           L   +PD+ T   ++ AC+ +   + G  LH  +L  G  +D  +   L+ +Y+  G+++
Sbjct: 237 LSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIE 296

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
            A ++FD+    +VV WN ++  Y +     ++  +F  ML +GV P+  +   +L  C 
Sbjct: 297 EALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCT 356

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
           +  EI +G  IH L        ++     L+DMY K G +++A+ + D + E+DVV+WTS
Sbjct: 357 HTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTS 416

Query: 284 MINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN 343
           MI GY  +   + AL  F+ MQ  G+ P+++ + S +SAC+ +  + +G  +HA      
Sbjct: 417 MIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSG 476

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
              +V +   L+ +YA+C + K +F  F     K+ + WN +++G   +GL  +A+++F 
Sbjct: 477 YSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFM 536

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
           +M     + N  T  S + A A LAD++Q   IH  +I+ G+ S  E+S  LI +Y KCG
Sbjct: 537 KMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCG 596

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
           S+E A   F E+  +++  V W+ II     HG G  A+ LF +M Q G++P++VTF   
Sbjct: 597 SIEDAKMDFFEMTKRNE--VSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGV 654

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           L ACSH GL++EGL  F  M   H    R DHY C+VD+LGRAG+LD A   +  MP+  
Sbjct: 655 LTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPA 714

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643
              VW  LL AC +H N+E+GE AAK L ELEP +  +YVLLS  Y+   +W   + +R 
Sbjct: 715 DSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRK 774

Query: 644 VMDEKGLRKAPAHSLIEVRNILTA 667
           +M ++G+RK P  S IEV+N++ A
Sbjct: 775 IMKDRGVRKEPGRSWIEVKNVVHA 798



 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 162/570 (28%), Positives = 286/570 (50%), Gaps = 9/570 (1%)

Query: 34  QLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           ++HA  I  G     +  +L   L    G V   R +F+E+S R +  +  V+  YAQNG
Sbjct: 63  EIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNG 122

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              ++++++  M R G   P  Y    ++ ACT     +LG  +H +V   GF  +TFVG
Sbjct: 123 LGEEAVRLYREMHRSGVV-PTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVG 181

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N LI++Y+     + A +VF  M     V++NTLISG+ +  +   AL +FD M  SG+ 
Sbjct: 182 NALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLS 241

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PD  ++ S+L AC  + ++  G+ +H  +    +  +     +L+D+YVK G + EA  +
Sbjct: 242 PDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQI 301

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           FD     +VV W  M+  Y    D+  +  +F  M   GVRPN  T   +L  C+    +
Sbjct: 302 FDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEI 361

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
             G  +H+ TIK   + ++ V   LIDMY+K   +  + ++     +K  V W +++AG 
Sbjct: 362 GLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGY 421

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
           V +   ++A+E F++M    + P++  L S + A A +  + Q   IH  +   G+ + V
Sbjct: 422 VQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADV 481

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            +  GL+ +Y++CG  + A   F    I+ K+ + W+ +I+G+   G  E A+ +F +M 
Sbjct: 482 SIWNGLVYLYARCGISKEAFSSFE--AIEHKEGITWNGLISGFAQSGLYEEALKVFMKMD 539

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           Q+G + N  TF S++ A ++   + +G  +   +++   T S  +    ++ L G+ G +
Sbjct: 540 QAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYT-SETEISNALISLYGKCGSI 598

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           ++A      M  K     W  ++  C  HG
Sbjct: 599 EDAKMDFFEMT-KRNEVSWNTIITCCSQHG 627


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 231/639 (36%), Positives = 357/639 (55%), Gaps = 14/639 (2%)

Query: 33  KQLHAFIITSGPLFT---HLRSSLVRAYGHVS---NVRILFDEMSERSSFL-YNTVMKMY 85
           +Q+H +II +  +F    +L ++L+  Y   S       LF ++  RS+ + +N ++  +
Sbjct: 162 RQIHGYIIRN--MFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGF 219

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
            +NG    SL+++  + +       + ++     AC+       G  +H  V+   F  D
Sbjct: 220 VENGMWEKSLELY-SLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDD 278

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
            +V   L+ MY   G V+ A+KVFD + +  V   N +IS +  N  A +AL +++ M K
Sbjct: 279 PYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKM-K 337

Query: 206 SGVEP-DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
           +G  P D  ++ S+L  C  +   + GR +H  V    +  N+A  +AL+ MY KCGS  
Sbjct: 338 AGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTE 397

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
           +A  VF  M ERDVV W SMI G+  N   ++AL LF+ M+ EGV+ +S  + S++SA  
Sbjct: 398 DADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGL 457

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
            L  ++ G  +H + IK+ LE +V V  +L+DMY+K    + +  VF+    K  V WN+
Sbjct: 458 GLENVELGHLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNS 517

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           +++    NGL   ++ L  Q+L      +  ++ ++L A + +A L +   +H Y IR  
Sbjct: 518 MISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQ 577

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
             S ++V   LID+Y KCG L+ A  IF  +P   +++V W+ +IAGYG HG+ E AV L
Sbjct: 578 IPSDLQVENALIDMYVKCGCLKYAQLIFENMP--RRNLVTWNSMIAGYGSHGNCEEAVRL 635

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           FKEM +S   P+EVTF + + +CSH G+++EGL+LF  M   +    R +HY  +VDLLG
Sbjct: 636 FKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLG 695

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
           RAGRLD+AY  IR MP+    +VW  LL AC  H N+ELGE+ A  L ++EP    NYV 
Sbjct: 696 RAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRNMELGELVADNLLKMEPARGSNYVP 755

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           L  LY  V  W  A N+R  M  +GL+K+P  S IEV+N
Sbjct: 756 LLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIEVKN 794



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 137/509 (26%), Positives = 230/509 (45%), Gaps = 51/509 (10%)

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
           +T+P ++K C  L+    G  +H  ++  G   D ++   LI MY+  G + +A +VFD 
Sbjct: 56  FTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDK 115

Query: 172 MWEH-----SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           M E       +  WN +I GYFK  + +E L  F  M +                   L 
Sbjct: 116 MSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQE-------------------LS 156

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER-DVVTWTSMI 285
               GR IH  +       +     AL+ MY  C    EA  +F ++  R ++V W  MI
Sbjct: 157 WYMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMI 216

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
            G+  NG    +L L+ L + E  +  S +     +ACS    L  GR +H   IK N +
Sbjct: 217 GGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQ 276

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
            +  V T+L+ MYAK   V+ + +VF +   K+    NA+++  + NG A  A+ L+ +M
Sbjct: 277 DDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKM 336

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
                  +  T++SLL   +++        +H  +I+    S V + + L+ +Y KCGS 
Sbjct: 337 KAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGST 396

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
           E A  +F    +K++D+V W  +IAG+  +   + A+ LF+ M + GV+ +    TS + 
Sbjct: 397 EDADSVF--YTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVIS 454

Query: 526 A-----------CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYD 574
           A             HG  +  GL+   F+      CS       +VD+  + G  + A  
Sbjct: 455 AGLGLENVELGHLIHGFAIKRGLESDVFV-----ACS-------LVDMYSKFGFAESAEM 502

Query: 575 LIRTMPLKPTHAVWGALLGACVIHGNVEL 603
           +  +MP K   A W +++     +G  E+
Sbjct: 503 VFSSMPNKNLVA-WNSMISCYSWNGLPEM 530



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 193/438 (44%), Gaps = 30/438 (6%)

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
           +RK +         S N+ I    +     +AL +      S +     +  S+L  C  
Sbjct: 8   SRKFYSLRQTEVSPSINSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCAS 67

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER-----DVV 279
           L  +  GR IH  +    L  +     +L++MYVKCG +  A  VFD+MSE      D+ 
Sbjct: 68  LSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDIT 127

Query: 280 TWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWT 339
            W  +I+GY   G     L  F  MQ                    L +   GR +H + 
Sbjct: 128 VWNPVIDGYFKYGHFEEGLAQFCRMQ-------------------ELSWYMAGRQIHGYI 168

Query: 340 IKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR-TSKKKTVPWNAILAGCVHNGLARKA 398
           I+   E +  +ETALI MY+ C+    ++ +F +  ++   V WN ++ G V NG+  K+
Sbjct: 169 IRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKS 228

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
           +EL+     E  +   A+      A +    L     +HC +I+  F     V T L+ +
Sbjct: 229 LELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTM 288

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           Y+K GS+E A K+F +  + DK++ + + +I+ +  +G    A+ L+ +M       +  
Sbjct: 289 YAKSGSVEDAKKVFDQ--VLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSF 346

Query: 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578
           T +S L  CS  G  D G  +   +++     + A   + ++ +  + G  ++A  +  T
Sbjct: 347 TISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQ-SALLTMYYKCGSTEDADSVFYT 405

Query: 579 MPLKPTHAVWGALL-GAC 595
           M  +   A WG+++ G C
Sbjct: 406 MKERDVVA-WGSMIAGFC 422



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 27/222 (12%)

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           N+ +   V  G   +A+EL  +     +     T  SLL   A L++L     IH  ++ 
Sbjct: 24  NSKIKALVQQGKYSQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVT 83

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIF---SEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            G  S   ++T LI++Y KCG L SA ++F   SE      DI VW+ +I GY  +GH E
Sbjct: 84  MGLQSDPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFE 143

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--T 557
             ++ F  M        E+++  A            G  +  +++ N       D Y  T
Sbjct: 144 EGLAQFCRM-------QELSWYMA------------GRQIHGYIIRNM---FEGDPYLET 181

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            ++ +     R  EA+ L   +  +     W  ++G  V +G
Sbjct: 182 ALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENG 223


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/656 (34%), Positives = 360/656 (54%), Gaps = 14/656 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAY---GHVSNVRILFDEMSERS 74
           L++ +     +   KQ+H  ++  G L    +++SL+  Y   G   N   +F+ M ER 
Sbjct: 45  LIKAFGGLYDVNKGKQIHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERD 104

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRL--GEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           S  +NT++  + Q+G    SL MF  M++   G Y+ +       + +C  +     G+ 
Sbjct: 105 SVSWNTMISGFCQSGDYVKSLVMFRRMVKECGGSYH-NRVACLAALSSCASIKCLTHGLE 163

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS-----WNTLISGY 187
           +HG ++  G D D F+ + LI MYM  G++K A  VF+ + ++ +V      WN +I GY
Sbjct: 164 IHGFLVKKGVDSDEFLVSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGY 223

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
             N     AL +F  ML+ G+ PD ++VV VL  C  L ++ +G+ IH L+ G  L  ++
Sbjct: 224 VSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDV 283

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
               AL++MY KCG    +  +F R    ++V W S++   A NG    AL  F     +
Sbjct: 284 RVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLD 343

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
              P+ + + + L ACS L    RG ++H + IK   + +V V  AL+D Y KC  ++ +
Sbjct: 344 CGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYA 403

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
            QVF   S +  V WNA+++G   N  A +A++ FR M  + ++PN  T+  +L     L
Sbjct: 404 QQVFYGLSTRDLVSWNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHL 463

Query: 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
           + +     +HCYL+R+ F +   V+  LI  Y+KCG + S+  +F ++P++++  V W+ 
Sbjct: 464 SVMILCKEVHCYLLRHWFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNE--VTWNS 521

Query: 488 IIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH 547
           I+ G+GMHG  +   + F++M ++ ++P+  TFTS L +CSH G +D G   FN M+E++
Sbjct: 522 ILLGFGMHGRTDEMFATFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDY 581

Query: 548 QTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVA 607
               R + YTC+VDLLGRAG L++AYDLI +MP  P   +WG+LL +C  HGN +L EV 
Sbjct: 582 NLEPRVEQYTCMVDLLGRAGNLNQAYDLIMSMPCSPDDRIWGSLLASCKNHGNTKLAEVV 641

Query: 608 AKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           A  +FEL+  + G  VLL+ LY       +   VR  + + GL+K P  S IEV N
Sbjct: 642 ANHIFELDASSVGYRVLLANLYEDSGNLNEVFRVRTDIKQMGLKKQPGCSWIEVDN 697



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 161/566 (28%), Positives = 272/566 (48%), Gaps = 42/566 (7%)

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
           N ++K   ++G   D+++++L  +  G    +   +P +IKA   L     G  +HG +L
Sbjct: 7   NRMIKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQIHGHLL 66

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
             GF  D FV N L+ MY   G    A  +F+ M E   VSWNT+ISG+ ++    ++LV
Sbjct: 67  KFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLV 126

Query: 199 VFDWMLKS--GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
           +F  M+K   G   +  + ++ L +C  +K +  G  IH  +    +  +    +AL++M
Sbjct: 127 MFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEM 186

Query: 257 YVKCGSVNEARLVFDRMSE-----RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           Y+KCG +  A  VF+R+ +     R++  W  MI GY  N  +  AL LF  M   G+ P
Sbjct: 187 YMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISP 246

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +S T+  +L  CS L  L  G+ +H   +   L+ +V V TAL++MY KC   + S Q+F
Sbjct: 247 DSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIF 306

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
            R+     V W +++  C  NG   +A+E F + +++   P+   L + L A + L+   
Sbjct: 307 KRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKP 366

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           + M IH + I+ GF S V V   L+D Y KCG +E A ++F    +  +D+V W+ +I+G
Sbjct: 367 RGMAIHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVF--YGLSTRDLVSWNALISG 424

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL---------------DEG 536
           +  +   + A+  F++M    ++PN VT    L  C+H  ++               +  
Sbjct: 425 FAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRHWFETN 484

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLL---------------GRAGRLDEAYDLIRTMP- 580
             + N ++  +  C        + + L               G  GR DE +     M  
Sbjct: 485 ALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFATFEKMKE 544

Query: 581 --LKPTHAVWGALLGACVIHGNVELG 604
             +KP H  + +LL +C   G V+ G
Sbjct: 545 ANIKPDHGTFTSLLSSCSHSGKVDAG 570


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/648 (34%), Positives = 359/648 (55%), Gaps = 8/648 (1%)

Query: 22  QYAATKSIAGTKQLHAFII--TSGPLFTHLRSSLVRAYG---HVSNVRILFDEMSERSSF 76
           Q+   KS+   + LHA II   S     +L +SL+  Y    H+   +++FD +  +   
Sbjct: 16  QFTHQKSLQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVI 75

Query: 77  LYNTVMKMYAQNGASHDSLKM-FLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHG 135
            +N ++  Y+Q G +  S  M     +R     P+ +T+  +  A ++L+    G   H 
Sbjct: 76  SWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHA 135

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
             +      D FVG+ L+ MY   G +  AR+VFD M E + V+W T+ISGY     A E
Sbjct: 136 VAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGE 195

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           A  VF+ M +   + +  +  SVL A    + ++ G+ IH L     L   ++  NALV 
Sbjct: 196 AFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVT 255

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           MY KCGS++++  VF+  ++++ +TW++MI GYA +GD   AL LF  M F G+ P+  T
Sbjct: 256 MYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFT 315

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
           +  +L+ACS    ++ G+ +H + +K   E ++ + TAL+DMYAK  + + + + F    
Sbjct: 316 LVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQ 375

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
           +   V W +++AG V NG    A+ L+ +M +E + PN+ T+ S+L A + LA   Q   
Sbjct: 376 QPDLVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQ 435

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           IH   I+YG    V + + L  +Y+KCG+LE  + +F  +P  ++DI+ W+ +I+G   +
Sbjct: 436 IHARTIKYGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMP--ERDIISWNAMISGLSQN 493

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
           G+G+ A+ LF+EM Q   +P++VTF + L ACSH GL+D G   F  M +      + +H
Sbjct: 494 GYGKEALELFEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEH 553

Query: 556 YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
           Y C+VD+L RAG+L EA + I +  +     +W  LLGAC  + N ELG  A + L EL 
Sbjct: 554 YACMVDVLSRAGKLYEAKEFIESTTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELG 613

Query: 616 PENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            +    YVLLS +Y+A+ R +D E VR +M  +G+ K P  S IE+++
Sbjct: 614 SQESSAYVLLSGIYTALGRPEDVERVRSMMKVRGVSKEPGCSWIELKS 661



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK--QNLECEVIVETALIDMYAKCNLVKL 366
           + P +L+  + L   +    L++GR+LHA  IK   +  C + +  +LI+ YAKC  +  
Sbjct: 3   LHPQNLSSFNSLVQFTHQKSLQKGRALHAQIIKLASSSSC-IYLANSLINFYAKCCHLPK 61

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKA--VELFRQMLVEVVEPNDATLNSLLPAY 424
           +  VF R   K  + WN ++ G    G    +  +ELF++M  + + PN  T + +  A 
Sbjct: 62  AKLVFDRIHNKDVISWNCLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAA 121

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           + L+ +      H   I+      V V + L+++Y K G L  A ++F  +P  +++ V 
Sbjct: 122 SNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMP--ERNEVT 179

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           W+ +I+GY +      A  +F+ M +     NE  FTS L A +    +D G
Sbjct: 180 WATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSG 231


>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/616 (34%), Positives = 337/616 (54%), Gaps = 10/616 (1%)

Query: 56  AYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
           A G + + +        R +FL+N V++  A +     +       +      PD +T+P
Sbjct: 54  AAGRMDDAQEALAAAGSRDAFLHNVVIRGLA-DAGLPGAALAAYAAMLAAGARPDRFTFP 112

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDM-DTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
           +V+K C  L     G A H   +  G    D + GN L+A Y   G V  A +VFD M  
Sbjct: 113 VVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAERVFDGMPA 172

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRM 233
             VV+WN+++ GY  N     ALV F  M ++  V+ D   +++ L AC     +  GR 
Sbjct: 173 RDVVTWNSMVDGYVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAACCLESALMQGRE 232

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           +H  V    +  ++    +++DMY KCG +  A  VF  M  R VVTW  MI GYALN  
Sbjct: 233 VHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCMIGGYALNER 292

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              A   F  M+ EG +   +T  +LL+AC+       GRS+H +  ++     V++ETA
Sbjct: 293 PEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQFLPHVVLETA 352

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           L++MY+K   VK S +VF + + K  V WN ++A  ++  +  +A+ LF  +L + + P+
Sbjct: 353 LLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFLDLLNQPLYPD 412

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
             T+++++PA+ +L  L+Q   +H Y+IR G+     +   ++ +Y++CG + S+ +IF 
Sbjct: 413 YFTMSAVVPAFVLLGLLRQCRQMHSYIIRLGYGENTLIMNAIMHMYARCGDVLSSREIFD 472

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
           ++  KD  ++ W+ +I GY +HG G +A+ +F EM  +G++PNE TF S L ACS  GL 
Sbjct: 473 KMAAKD--VISWNTMIMGYAIHGQGRSALEMFSEMKCNGLRPNESTFVSVLTACSVSGLT 530

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
           DEG   FN M  ++    + +HY C+ DLLGRAG L E    I  MP+ PT  VWG+LL 
Sbjct: 531 DEGWTQFNSMQRDYGMIPQIEHYGCMTDLLGRAGDLKEVMQFIENMPIDPTFRVWGSLLT 590

Query: 594 ACVIHGNVELGEVAAKWLFELEP-----ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
           A     ++++ E AA+ +F+LE      +N G YVL+S +Y+   RWKD E ++ +M+EK
Sbjct: 591 ASRNRNDIDIAEYAAERIFQLEQDQLEHDNTGCYVLISSMYADAGRWKDVERIKSLMEEK 650

Query: 649 GLRKAPAHSLIEVRNI 664
           GLR+    S++E+  I
Sbjct: 651 GLRRTDPRSIVELHGI 666



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 137/281 (48%), Gaps = 4/281 (1%)

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
            +LV  +   G +++A+        RD      +I G A  G    AL  +  M   G R
Sbjct: 46  KSLVLSHAAAGRMDDAQEALAAAGSRDAFLHNVVIRGLADAGLPGAALAAYAAMLAAGAR 105

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL-ECEVIVETALIDMYAKCNLVKLSFQ 369
           P+  T   +L  C+ L  L  GR+ H+  I+  +   +V    +L+  YA+  LV  + +
Sbjct: 106 PDRFTFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAER 165

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILA 428
           VF     +  V WN+++ G V NGL   A+  FR+M   + V+ +   + + L A  + +
Sbjct: 166 VFDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAACCLES 225

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            L Q   +H Y+IR+G    V+V T ++D+Y KCG + SA  +F+ +P   + +V W+ +
Sbjct: 226 ALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMP--SRTVVTWNCM 283

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
           I GY ++   E A   F +M   G Q   VT  + L AC+ 
Sbjct: 284 IGGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQ 324


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/602 (34%), Positives = 334/602 (55%), Gaps = 3/602 (0%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F +M  R +  +NT++  +AQ G    +L++F  M +    +PD  T   ++ AC  L 
Sbjct: 200 VFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEM-QFSGLSPDCVTISSLLAACASLG 258

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             + G  LH  +   G   D  +   L+ +Y+  G+V+ A  +F++    +VV WN ++ 
Sbjct: 259 DLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLV 318

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
            + +     ++  +F  M  +G+ P+  +   +L  C   +EI++G  IH L        
Sbjct: 319 AFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFES 378

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           ++     L+DMY K G + +AR V + + E+DVV+WTSMI GY  +   ++AL  F+ MQ
Sbjct: 379 DMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQ 438

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
             G+ P+++ + S +S C+ +  +++G  +HA         +V +  AL+++YA+C  ++
Sbjct: 439 KCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIR 498

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            +F  F     K  + WN +++G   +GL  +A+++F +M    V+ N  T  S L A A
Sbjct: 499 EAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASA 558

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            LA+++Q   IH  +I+ G     EV   LI +Y KCGS E A   FSE+   +++ V W
Sbjct: 559 NLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEM--SERNEVSW 616

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + II     HG G  A+ LF +M + G++PN+VTF   L ACSH GL++EGL  F  M +
Sbjct: 617 NTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSD 676

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
            +    R DHY C++D+ GRAG+LD A   I  MP+     VW  LL AC +H N+E+GE
Sbjct: 677 EYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGE 736

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
            AAK L ELEP +  +YVLLS  Y+   +W + + VR +M ++G+RK P  S IEV+N++
Sbjct: 737 FAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVV 796

Query: 666 TA 667
            A
Sbjct: 797 HA 798



 Score =  268 bits (686), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 171/632 (27%), Positives = 307/632 (48%), Gaps = 17/632 (2%)

Query: 34  QLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           ++HA  +T G     +  +L   L    G V   R +F+E+S R +  +  ++  YAQNG
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              ++L ++  M R G   P  Y    V+ +CT       G  +H +    GF  + FVG
Sbjct: 123 LGEEALGLYRQMHRAGVV-PTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N +I +Y+  G  + A +VF  M     V++NTLISG+ +  + + AL +F+ M  SG+ 
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLS 241

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PDC ++ S+L AC  L +++ G  +H  +    +  +     +L+D+YVKCG V  A ++
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F+     +VV W  M+  +    D+  +  LF  MQ  G+RPN  T   +L  C+    +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
             G  +H+ ++K   E ++ V   LIDMY+K   ++ + +V     +K  V W +++AG 
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
           V +   + A+  F++M    + P++  L S +   A +  ++Q + IH  +   G+   V
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDV 481

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            +   L+++Y++CG +  A   F EI  KD+  + W+ +++G+   G  E A+ +F  M 
Sbjct: 482 SIWNALVNLYARCGRIREAFSSFEEIEHKDE--ITWNGLVSGFAQSGLHEEALKVFMRMD 539

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           QSGV+ N  TF SAL A ++   + +G  +   +++   +    +    ++ L G+ G  
Sbjct: 540 QSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFE-TEVGNALISLYGKCGSF 598

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE--NPGNYVLLSK 627
           ++A      M  +     W  ++ +C  HG    G  A     +++ E   P +   +  
Sbjct: 599 EDAKMEFSEMSER-NEVSWNTIITSCSQHGR---GLEALDLFDQMKKEGIKPNDVTFIGV 654

Query: 628 LYSAVRRWKDAENV---RDVMDEKGLRKAPAH 656
           L +        E +   + + DE G+R  P H
Sbjct: 655 LAACSHVGLVEEGLSYFKSMSDEYGIRPRPDH 686



 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 144/489 (29%), Positives = 253/489 (51%), Gaps = 9/489 (1%)

Query: 34  QLHAFIITSGPLFTH-LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           QLH+++  +G    + +  SL+  Y   G V    ++F+     +  L+N ++  + Q  
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIN 324

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
               S ++F  M   G   P+ +TYP +++ CT      LG  +H   + TGF+ D +V 
Sbjct: 325 DLAKSFELFCQMQAAG-IRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVS 383

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
             LI MY  +G ++ AR+V + + E  VVSW ++I+GY ++   K+AL  F  M K G+ 
Sbjct: 384 GVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIW 443

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PD   + S +  C  +  +  G  IH  +       +++ WNALV++Y +CG + EA   
Sbjct: 444 PDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSS 503

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F+ +  +D +TW  +++G+A +G    AL +F  M   GV+ N  T  S LSA ++L  +
Sbjct: 504 FEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEI 563

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           K+G+ +HA  IK     E  V  ALI +Y KC   + +   F+  S++  V WN I+  C
Sbjct: 564 KQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSC 623

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI-RYGFLSV 448
             +G   +A++LF QM  E ++PND T   +L A + +  +++ ++    +   YG    
Sbjct: 624 SQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPR 683

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
            +    +IDI+ + G L+ A K   E+PI   D +VW  +++   +H + E      K +
Sbjct: 684 PDHYACVIDIFGRAGQLDRAKKFIEEMPIA-ADAMVWRTLLSACKVHKNIEVGEFAAKHL 742

Query: 509 VQSGVQPNE 517
           ++  ++P++
Sbjct: 743 LE--LEPHD 749


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/665 (33%), Positives = 359/665 (53%), Gaps = 63/665 (9%)

Query: 56  AYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
           A G      ++ + ++   +  +N +++ + + G    ++ +   MLR G   PD++T P
Sbjct: 101 ACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGT-RPDHFTLP 159

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
            V+KAC +L   + G A HG +   GF+ + F+ N L+AMY   G ++ A  +FD + + 
Sbjct: 160 HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQR 219

Query: 176 ---SVVSWNTLISGYFKNAYAKEALVVFDWML------KSGVEPDCASVVSVLPACGYLK 226
               V+SWN+++S + K++ A  AL +F  M        +    D  S+V++LPACG LK
Sbjct: 220 GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 279

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
            +   + +H          ++   NAL+D Y KCG +  A  VF+ M  +DVV+W +M+ 
Sbjct: 280 AVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 339

Query: 287 GYALNGDVR-----------------------------------NALGLFQLMQFEGVRP 311
           GY+ +G+                                      AL LF+ M F G  P
Sbjct: 340 GYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLP 399

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL----------ECEVIVETALIDMYAKC 361
           N +TI S+LSAC+SL    +G  +HA+++K  L          + +++V  ALIDMY+KC
Sbjct: 400 NCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKC 459

Query: 362 NLVKLSFQVFART--SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV--VEPNDATL 417
              K +  +F      ++  V W  ++ G    G +  A++LF +M+ E   V PN  T+
Sbjct: 460 RSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTI 519

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFL--SVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           + +L A A LA ++    IH Y++R+     S   V+  LID+YSKCG +++A  +F  +
Sbjct: 520 SCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSM 579

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
               K  + W+ ++ GYGMHG G  A+ +F +M ++G  P+++TF   L+ACSH G++D+
Sbjct: 580 --SQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQ 637

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           GL  F+ M  ++    RA+HY C +DLL R+GRLD+A+  ++ MP++PT  VW ALL AC
Sbjct: 638 GLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSAC 697

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
            +H NVEL E A   L E+  EN G+Y L+S +Y+   RWKD   +R +M + G++K P 
Sbjct: 698 RVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPG 757

Query: 656 HSLIE 660
            S ++
Sbjct: 758 CSWVQ 762



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 149/509 (29%), Positives = 246/509 (48%), Gaps = 58/509 (11%)

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           +G  ++A Y+  G    A  V + +     V WN LI  + K      A+ V   ML++G
Sbjct: 91  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 150

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
             PD  ++  VL ACG L     G   H L+       N+   NALV MY +CGS+ EA 
Sbjct: 151 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 210

Query: 268 LVFDRMSER---DVVTWTSMINGYALNGDVRNALGLFQLMQF------EGVRPNSLTIGS 318
           ++FD +++R   DV++W S+++ +  + +   AL LF  M           R + ++I +
Sbjct: 211 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 270

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA------ 372
           +L AC SL  + + + +H   I+     +V V  ALID YAKC L++ + +VF       
Sbjct: 271 ILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 330

Query: 373 ------------------------RTSKKKTVP-----WNAILAGCVHNGLARKAVELFR 403
                                   +  +K+ +P     W A++AG    G + +A+ LFR
Sbjct: 331 VVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFR 390

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV----------VEVST 453
           QM+     PN  T+ S+L A A L    Q   IH Y ++   L++          + V  
Sbjct: 391 QMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYN 450

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS-- 511
            LID+YSKC S ++A  IF +IP++++++V W+V+I G+  +G    A+ LF EM+    
Sbjct: 451 ALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPY 510

Query: 512 GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY-TCIVDLLGRAGRLD 570
           GV PN  T +  L AC+H   +  G  +  ++L +H+  S A     C++D+  + G +D
Sbjct: 511 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVD 570

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            A  +  +M  K   + W +++    +HG
Sbjct: 571 TARHVFDSMSQKSAIS-WTSMMTGYGMHG 598



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 9/162 (5%)

Query: 33  KQLHAFII------TSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYA 86
           KQ+HA+++      +S     +    +    G V   R +FD MS++S+  + ++M  Y 
Sbjct: 536 KQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 595

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT-GFDMD 145
            +G   ++L +F  M + G + PD+ T+ +V+ AC+       G++    +    G    
Sbjct: 596 MHGRGSEALDIFDKMRKAG-FVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPR 654

Query: 146 TFVGNCLIAMYMNFGEV-KAARKVFDAMWEHSVVSWNTLISG 186
                C I +    G + KA R V D   E + V W  L+S 
Sbjct: 655 AEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSA 696



 Score = 39.3 bits (90), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 13/133 (9%)

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
           F+S   + TG++  Y  CG+ + A  +     +     V W+++I  +   G  ++A+++
Sbjct: 85  FISPRSLGTGVVASYLACGATDYALLVLER--VTPSPAVWWNLLIREHIKQGRLDSAINV 142

Query: 505 FKEMVQSGVQPNEVTFTSALHACSH-----GGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
              M+++G +P+  T    L AC        G    GL   N    N   C+       +
Sbjct: 143 SCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICN------AL 196

Query: 560 VDLLGRAGRLDEA 572
           V +  R G L+EA
Sbjct: 197 VAMYSRCGSLEEA 209


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/602 (34%), Positives = 334/602 (55%), Gaps = 3/602 (0%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F +M  R +  +NT++  +AQ G    +L++F  M +    +PD  T   ++ AC  L 
Sbjct: 200 VFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEM-QFSGLSPDCVTISSLLAACASLG 258

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             + G  LH  +   G   D  +   L+ +Y+  G+V+ A  +F++    +VV WN ++ 
Sbjct: 259 DLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLV 318

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
            + +     ++  +F  M  +G+ P+  +   +L  C   +EI++G  IH L        
Sbjct: 319 AFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFES 378

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           ++     L+DMY K G + +AR V + + E+DVV+WTSMI GY  +   ++AL  F+ MQ
Sbjct: 379 DMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQ 438

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
             G+ P+++ + S +S C+ +  +++G  +HA         +V +  AL+++YA+C  ++
Sbjct: 439 KCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIR 498

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            +F  F     K  + WN +++G   +GL  +A+++F +M    V+ N  T  S L A A
Sbjct: 499 EAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASA 558

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            LA+++Q   IH  +I+ G     EV   LI +Y KCGS E A   FSE+   +++ V W
Sbjct: 559 NLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEM--SERNEVSW 616

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + II     HG G  A+ LF +M + G++PN+VTF   L ACSH GL++EGL  F  M +
Sbjct: 617 NTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSD 676

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
            +    R DHY C++D+ GRAG+LD A   I  MP+     VW  LL AC +H N+E+GE
Sbjct: 677 EYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGE 736

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
            AAK L ELEP +  +YVLLS  Y+   +W + + VR +M ++G+RK P  S IEV+N++
Sbjct: 737 FAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVV 796

Query: 666 TA 667
            A
Sbjct: 797 HA 798



 Score =  268 bits (686), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 171/632 (27%), Positives = 307/632 (48%), Gaps = 17/632 (2%)

Query: 34  QLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           ++HA  +T G     +  +L   L    G V   R +F+E+S R +  +  ++  YAQNG
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              ++L ++  M R G   P  Y    V+ +CT       G  +H +    GF  + FVG
Sbjct: 123 LGEEALGLYRQMHRAG-VVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N +I +Y+  G  + A +VF  M     V++NTLISG+ +  + + AL +F+ M  SG+ 
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLS 241

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PDC ++ S+L AC  L +++ G  +H  +    +  +     +L+D+YVKCG V  A ++
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F+     +VV W  M+  +    D+  +  LF  MQ  G+RPN  T   +L  C+    +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
             G  +H+ ++K   E ++ V   LIDMY+K   ++ + +V     +K  V W +++AG 
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
           V +   + A+  F++M    + P++  L S +   A +  ++Q + IH  +   G+   V
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDV 481

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            +   L+++Y++CG +  A   F EI  KD+  + W+ +++G+   G  E A+ +F  M 
Sbjct: 482 SIWNALVNLYARCGRIREAFSSFEEIEHKDE--ITWNGLVSGFAQSGLHEEALKVFMRMD 539

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           QSGV+ N  TF SAL A ++   + +G  +   +++   +    +    ++ L G+ G  
Sbjct: 540 QSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFE-TEVGNALISLYGKCGSF 598

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE--NPGNYVLLSK 627
           ++A      M  +     W  ++ +C  HG    G  A     +++ E   P +   +  
Sbjct: 599 EDAKMEFSEMSER-NEVSWNTIITSCSQHGR---GLEALDLFDQMKKEGIKPNDVTFIGV 654

Query: 628 LYSAVRRWKDAENV---RDVMDEKGLRKAPAH 656
           L +        E +   + + DE G+R  P H
Sbjct: 655 LAACSHVGLVEEGLSYFKSMSDEYGIRPRPDH 686



 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 144/489 (29%), Positives = 253/489 (51%), Gaps = 9/489 (1%)

Query: 34  QLHAFIITSGPLFTH-LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           QLH+++  +G    + +  SL+  Y   G V    ++F+     +  L+N ++  + Q  
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIN 324

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
               S ++F  M   G   P+ +TYP +++ CT      LG  +H   + TGF+ D +V 
Sbjct: 325 DLAKSFELFCQMQAAG-IRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVS 383

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
             LI MY  +G ++ AR+V + + E  VVSW ++I+GY ++   K+AL  F  M K G+ 
Sbjct: 384 GVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIW 443

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PD   + S +  C  +  +  G  IH  +       +++ WNALV++Y +CG + EA   
Sbjct: 444 PDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSS 503

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F+ +  +D +TW  +++G+A +G    AL +F  M   GV+ N  T  S LSA ++L  +
Sbjct: 504 FEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEI 563

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           K+G+ +HA  IK     E  V  ALI +Y KC   + +   F+  S++  V WN I+  C
Sbjct: 564 KQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSC 623

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI-RYGFLSV 448
             +G   +A++LF QM  E ++PND T   +L A + +  +++ ++    +   YG    
Sbjct: 624 SQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPR 683

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
            +    +IDI+ + G L+ A K   E+PI   D +VW  +++   +H + E      K +
Sbjct: 684 PDHYACVIDIFGRAGQLDRAKKFIEEMPIA-ADAMVWRTLLSACKVHKNIEVGEFAAKHL 742

Query: 509 VQSGVQPNE 517
           ++  ++P++
Sbjct: 743 LE--LEPHD 749


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/665 (33%), Positives = 359/665 (53%), Gaps = 63/665 (9%)

Query: 56  AYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
           A G      ++ + ++   +  +N +++ + + G    ++ +   MLR G   PD++T P
Sbjct: 108 ACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGT-RPDHFTLP 166

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
            V+KAC +L   + G A HG +   GF+ + F+ N L+AMY   G ++ A  +FD + + 
Sbjct: 167 HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQR 226

Query: 176 ---SVVSWNTLISGYFKNAYAKEALVVFDWML------KSGVEPDCASVVSVLPACGYLK 226
               V+SWN+++S + K++ A  AL +F  M        +    D  S+V++LPACG LK
Sbjct: 227 GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 286

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
            +   + +H          ++   NAL+D Y KCG +  A  VF+ M  +DVV+W +M+ 
Sbjct: 287 AVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 346

Query: 287 GYALNGDVR-----------------------------------NALGLFQLMQFEGVRP 311
           GY+ +G+                                      AL LF+ M F G  P
Sbjct: 347 GYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLP 406

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL----------ECEVIVETALIDMYAKC 361
           N +TI S+LSAC+SL    +G  +HA+++K  L          + +++V  ALIDMY+KC
Sbjct: 407 NCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKC 466

Query: 362 NLVKLSFQVFART--SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV--VEPNDATL 417
              K +  +F      ++  V W  ++ G    G +  A++LF +M+ E   V PN  T+
Sbjct: 467 RSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTI 526

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFL--SVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           + +L A A LA ++    IH Y++R+     S   V+  LID+YSKCG +++A  +F  +
Sbjct: 527 SCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSM 586

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
               K  + W+ ++ GYGMHG G  A+ +F +M ++G  P+++TF   L+ACSH G++D+
Sbjct: 587 --SQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQ 644

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           GL  F+ M  ++    RA+HY C +DLL R+GRLD+A+  ++ MP++PT  VW ALL AC
Sbjct: 645 GLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSAC 704

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
            +H NVEL E A   L E+  EN G+Y L+S +Y+   RWKD   +R +M + G++K P 
Sbjct: 705 RVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPG 764

Query: 656 HSLIE 660
            S ++
Sbjct: 765 CSWVQ 769



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 149/509 (29%), Positives = 246/509 (48%), Gaps = 58/509 (11%)

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           +G  ++A Y+  G    A  V + +     V WN LI  + K      A+ V   ML++G
Sbjct: 98  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 157

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
             PD  ++  VL ACG L     G   H L+       N+   NALV MY +CGS+ EA 
Sbjct: 158 TRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 217

Query: 268 LVFDRMSER---DVVTWTSMINGYALNGDVRNALGLFQLMQF------EGVRPNSLTIGS 318
           ++FD +++R   DV++W S+++ +  + +   AL LF  M           R + ++I +
Sbjct: 218 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 277

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA------ 372
           +L AC SL  + + + +H   I+     +V V  ALID YAKC L++ + +VF       
Sbjct: 278 ILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 337

Query: 373 ------------------------RTSKKKTVP-----WNAILAGCVHNGLARKAVELFR 403
                                   +  +K+ +P     W A++AG    G + +A+ LFR
Sbjct: 338 VVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFR 397

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV----------VEVST 453
           QM+     PN  T+ S+L A A L    Q   IH Y ++   L++          + V  
Sbjct: 398 QMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYN 457

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS-- 511
            LID+YSKC S ++A  IF +IP++++++V W+V+I G+  +G    A+ LF EM+    
Sbjct: 458 ALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPY 517

Query: 512 GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY-TCIVDLLGRAGRLD 570
           GV PN  T +  L AC+H   +  G  +  ++L +H+  S A     C++D+  + G +D
Sbjct: 518 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVD 577

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            A  +  +M  K   + W +++    +HG
Sbjct: 578 TARHVFDSMSQKSAIS-WTSMMTGYGMHG 605



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 9/162 (5%)

Query: 33  KQLHAFII------TSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYA 86
           KQ+HA+++      +S     +    +    G V   R +FD MS++S+  + ++M  Y 
Sbjct: 543 KQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 602

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT-GFDMD 145
            +G   ++L +F  M + G + PD+ T+ +V+ AC+       G++    +    G    
Sbjct: 603 MHGRGSEALDIFDKMRKAG-FVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPR 661

Query: 146 TFVGNCLIAMYMNFGEV-KAARKVFDAMWEHSVVSWNTLISG 186
                C I +    G + KA R V D   E + V W  L+S 
Sbjct: 662 AEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSA 703



 Score = 39.3 bits (90), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 13/133 (9%)

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
           F+S   + TG++  Y  CG+ + A  +     +     V W+++I  +   G  ++A+++
Sbjct: 92  FISPRSLGTGVVASYLACGATDYALLVLER--VTPSPAVWWNLLIREHIKQGRLDSAINV 149

Query: 505 FKEMVQSGVQPNEVTFTSALHACSH-----GGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
              M+++G +P+  T    L AC        G    GL   N    N   C+       +
Sbjct: 150 SCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICN------AL 203

Query: 560 VDLLGRAGRLDEA 572
           V +  R G L+EA
Sbjct: 204 VAMYSRCGSLEEA 216


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/635 (34%), Positives = 347/635 (54%), Gaps = 8/635 (1%)

Query: 34  QLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEM-SERSSFLYNTVMKMYAQN 88
           Q+HA  + +G        +   ++   +G + + R +F+E  SER++  +N +M  Y +N
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
               D++++F  M+  G   P  + +  V+ ACT     + G  +H  V+  G+D D F 
Sbjct: 181 DQCGDAIQVFGEMVWSG-IQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFT 239

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+ MYM  G V  A  +F+ M +  VVSWN LISG   N +   A+ +   M  SG+
Sbjct: 240 ANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGL 299

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P+  ++ S+L AC      ++GR IH  +       +      LVDMY K   +++AR 
Sbjct: 300 VPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARK 359

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VFD M  RD++   ++I+G +  G    AL LF  ++ EG+  N  T+ ++L + +SL  
Sbjct: 360 VFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEA 419

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
               R +HA  +K     +  V   LID Y KC+ +  + +VF   S    +   +++  
Sbjct: 420 ASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITA 479

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
                    A++LF +ML + +EP+   L+SLL A A L+  +Q   +H +LI+  F+S 
Sbjct: 480 LSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSD 539

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
                 L+  Y+KCGS+E A   FS +P  ++ +V WS +I G   HGHG+ A+ LF  M
Sbjct: 540 AFAGNALVYTYAKCGSIEDAELAFSSLP--ERGVVSWSAMIGGLAQHGHGKRALELFGRM 597

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
           V  G+ PN +T TS L AC+H GL+DE    FN M E        +HY+C++DLLGRAG+
Sbjct: 598 VDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGK 657

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           LD+A +L+ +MP +   ++WGALLGA  +H + ELG++AA+ LF LEPE  G +VLL+  
Sbjct: 658 LDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANT 717

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           Y++   W +   VR +M +  ++K PA S IEV++
Sbjct: 718 YASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKD 752



 Score =  305 bits (781), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 191/624 (30%), Positives = 321/624 (51%), Gaps = 18/624 (2%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSN---VRILF 67
           ++   + + + +YAA +++     LHA ++ SG L +  R+ L+  Y         R  F
Sbjct: 2   RSAGTISQQLTRYAAAQALLPGAHLHASLLKSGSLAS-FRNHLISFYSKCRRPCCARRFF 60

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           DE+ +     +++++  Y+ NG    +++ F GM R      + +  P+V+K   D    
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGM-RAEGVCCNEFALPVVLKCVPDA--- 116

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF-DAMWEHSVVSWNTLISG 186
           +LG  +H   + TGF  D FV N L+AMY  FG +  AR+VF +A  E + VSWN L+S 
Sbjct: 117 RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
           Y KN    +A+ VF  M+ SG++P       V+ AC   + IE GR +H +V      K+
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           +   NALVDMY+K G V+ A ++F++M + DVV+W ++I+G  LNG    A+ L   M++
Sbjct: 237 VFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
            G+ PN  T+ S+L ACS       GR +H + IK N + +  +   L+DMYAK + +  
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 356

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           + +VF     +  +  NA+++GC H G   +A+ LF ++  E +  N  TL ++L + A 
Sbjct: 357 ARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTAS 416

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           L        +H   ++ GF+    V  GLID Y KC  L  A+++F E      DI+  +
Sbjct: 417 LEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEE--CSSGDIIACT 474

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            +I       HGE A+ LF EM++ G++P+    +S L+AC+     ++G  +   +++ 
Sbjct: 475 SMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR 534

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
            Q  S A     +V    + G +++A     ++P +     W A++G    HG+   G+ 
Sbjct: 535 -QFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV-VSWSAMIGGLAQHGH---GKR 589

Query: 607 AAKWLFELEPE--NPGNYVLLSKL 628
           A +    +  E  NP +  + S L
Sbjct: 590 ALELFGRMVDEGINPNHITMTSVL 613


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/635 (34%), Positives = 347/635 (54%), Gaps = 8/635 (1%)

Query: 34  QLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEM-SERSSFLYNTVMKMYAQN 88
           Q+HA  + +G        +   ++   +G + + R +F+E  SER++  +N +M  Y +N
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
               D++++F  M+  G   P  + +  V+ ACT     + G  +H  V+  G+D D F 
Sbjct: 181 DQCGDAIQVFGEMVWSG-IQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFT 239

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+ MYM  G V  A  +F+ M +  VVSWN LISG   N +   A+ +   M  SG+
Sbjct: 240 ANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGL 299

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P+  ++ S+L AC      ++GR IH  +       +      LVDMY K   +++AR 
Sbjct: 300 VPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARK 359

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VFD M  RD++   ++I+G +  G    AL LF  ++ EG+  N  T+ ++L + +SL  
Sbjct: 360 VFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEA 419

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
               R +HA  +K     +  V   LID Y KC+ +  + +VF   S    +   +++  
Sbjct: 420 ASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITA 479

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
                    A++LF +ML + +EP+   L+SLL A A L+  +Q   +H +LI+  F+S 
Sbjct: 480 LSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSD 539

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
                 L+  Y+KCGS+E A   FS +P  ++ +V WS +I G   HGHG+ A+ LF  M
Sbjct: 540 AFAGNALVYTYAKCGSIEDAELAFSSLP--ERGVVSWSAMIGGLAQHGHGKRALELFGRM 597

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
           V  G+ PN +T TS L AC+H GL+DE    FN M E        +HY+C++DLLGRAG+
Sbjct: 598 VDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGK 657

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           LD+A +L+ +MP +   ++WGALLGA  +H + ELG++AA+ LF LEPE  G +VLL+  
Sbjct: 658 LDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANT 717

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           Y++   W +   VR +M +  ++K PA S IEV++
Sbjct: 718 YASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKD 752



 Score =  305 bits (781), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 191/624 (30%), Positives = 322/624 (51%), Gaps = 18/624 (2%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSN---VRILF 67
           ++   + + + +YAA +++     LHA ++ SG L +  R+ L+  Y         R +F
Sbjct: 2   RSAGTISQQLTRYAAAQALLPGAHLHASLLKSGSLAS-FRNHLISFYSKCRRPCCARRVF 60

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           DE+ +     +++++  Y+ NG    +++ F GM R      + +  P+V+K   D    
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGM-RAEGVCCNEFALPVVLKCVPDA--- 116

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF-DAMWEHSVVSWNTLISG 186
           +LG  +H   + TGF  D FV N L+AMY  FG +  AR+VF +A  E + VSWN L+S 
Sbjct: 117 RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSA 176

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
           Y KN    +A+ VF  M+ SG++P       V+ AC   + IE GR +H +V      K+
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           +   NALVDMY+K G V+ A ++F++M + DVV+W ++I+G  LNG    A+ L   M++
Sbjct: 237 VFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
            G+ PN  T+ S+L ACS       GR +H + IK N + +  +   L+DMYAK + +  
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 356

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           + +VF     +  +  NA+++GC H G   +A+ LF ++  E +  N  TL ++L + A 
Sbjct: 357 ARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTAS 416

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           L        +H   ++ GF+    V  GLID Y KC  L  A+++F E      DI+  +
Sbjct: 417 LEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEE--CSSGDIIACT 474

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            +I       HGE A+ LF EM++ G++P+    +S L+AC+     ++G  +   +++ 
Sbjct: 475 SMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR 534

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
            Q  S A     +V    + G +++A     ++P +     W A++G    HG+   G+ 
Sbjct: 535 -QFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV-VSWSAMIGGLAQHGH---GKR 589

Query: 607 AAKWLFELEPE--NPGNYVLLSKL 628
           A +    +  E  NP +  + S L
Sbjct: 590 ALELFGRMVDEGINPNHITMTSVL 613


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/535 (39%), Positives = 320/535 (59%), Gaps = 3/535 (0%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H R++I+G   + F+   L+    N G++  ARK+FD      V  WN +I  Y +N  
Sbjct: 75  IHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNM 134

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            ++ + ++ WM  +GV PD  +   VL AC  L +  +  +IH  +     G ++   N 
Sbjct: 135 YRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNG 194

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           LV +Y KCG +  A++VFD +  R +V+WTS+I+GYA NG    AL +F  M+  GV+P+
Sbjct: 195 LVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPD 254

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            + + S+L A + +  L++GRS+H + IK  LE E  +  +L   YAKC LV ++   F 
Sbjct: 255 WIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFD 314

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           +      + WNA+++G   NG A +AV LF  M+   ++P+  T+ S + A A +  L+ 
Sbjct: 315 QMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLEL 374

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
           A  +  Y+ +  + S + V+T LID+Y+KCGS+E A ++F      DKD+V+WS +I GY
Sbjct: 375 AQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRN--SDKDVVMWSAMIMGY 432

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
           G+HG G  A++L+  M Q+GV PN+VTF   L AC+H GL+ EG +LF+ M ++ +   R
Sbjct: 433 GLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCM-KDFEIVPR 491

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
            +HY+C+VDLLGRAG L EA   I  +P++P  +VWGALL AC I+  V LGE AA  LF
Sbjct: 492 NEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLF 551

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
            L+P N G+YV LS LY++   W    +VR +M EKGL K   +S+IE+   L A
Sbjct: 552 SLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQA 606



 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 153/463 (33%), Positives = 249/463 (53%), Gaps = 8/463 (1%)

Query: 34  QLHAFIITSGPLFT-HLRSSLVRA---YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           Q+H  ++ SG      L + LV      G +   R LFDE      F++N +++ Y++N 
Sbjct: 74  QIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNN 133

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              D+++M+  M R    +PD +T+P V+KACT+L    L   +HG+++  GF  D FV 
Sbjct: 134 MYRDTVEMYRWM-RWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQ 192

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N L+A+Y   G +  A+ VFD ++  ++VSW ++ISGY +N  A EAL +F  M  +GV+
Sbjct: 193 NGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVK 252

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PD  ++VS+L A   + ++E GR IH  V    L    A   +L   Y KCG V  A+  
Sbjct: 253 PDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSF 312

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           FD+M   +V+ W +MI+GYA NG    A+ LF  M    ++P+S+T+ S + A + +  L
Sbjct: 313 FDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSL 372

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           +  + +  +  K N   ++ V T+LIDMYAKC  V+ + +VF R S K  V W+A++ G 
Sbjct: 373 ELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGY 432

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI-HCYLIRYGFLSV 448
             +G   +A+ L+  M    V PND T   LL A      +++   + HC +  +  +  
Sbjct: 433 GLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHC-MKDFEIVPR 491

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
            E  + ++D+  + G L  A     +IPI +  + VW  +++ 
Sbjct: 492 NEHYSCVVDLLGRAGYLGEACAFIMKIPI-EPGVSVWGALLSA 533


>gi|225427607|ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
           mitochondrial [Vitis vinifera]
          Length = 828

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/618 (36%), Positives = 345/618 (55%), Gaps = 10/618 (1%)

Query: 49  LRSSLVRAYGHVSNVR---ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
             +SL+  Y    +++   ILF EM  +    +N ++   A N    ++  +   M  LG
Sbjct: 213 FENSLISLYSQCRDIQAAEILFKEMKYKDIVSWNAMLDGLALNQRIWEAFDLLHEMQLLG 272

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
              PD+ T  I+I  C +L   + G A+HG  L     +D  V N LI MY    +VK A
Sbjct: 273 CVQPDSVTVVIIIPLCAELMLLREGRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRA 332

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
             VF A+ E  +VSWN +ISGY +N +++EA  +F  +L+S  +   ++++++LP+C   
Sbjct: 333 EHVFKAIPERDLVSWNAMISGYSQNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSS 392

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER-DVVTWTSM 284
           + ++ G  IH          N  A N+L+ MY+ CG +     +   +S   D+V W ++
Sbjct: 393 EFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINCGDLVACFSLLQTVSAAADIVCWNTV 452

Query: 285 INGYALNGDVRNALGLFQLM-QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN 343
           + G   NG    AL  F LM Q   V  +S+ + +++SAC +L  L  G SLH   +K  
Sbjct: 453 MAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVISACGNLELLFAGGSLHGLALKTL 512

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
           +E ++ V+ ALI MY +C  ++ +  +F  +  +    WN +++    N   R+A+ELF 
Sbjct: 513 MESDIRVQNALITMYGRCGEIENARIIFGFSCNRNLCSWNCMISAFSQNKDGRRALELFC 572

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
            +     EPN+ T+  +L A   L  L+    IH ++IR        VS  L D+YS CG
Sbjct: 573 HI---EFEPNEITIVGILSACTQLGVLRHGKQIHGHVIRSRLQGNSFVSAALEDMYSNCG 629

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            L++A +IF   P  ++ +  W+ +I+ +G H +G  A+ LF EM + G +P + TF S 
Sbjct: 630 RLDTAFQIFQSSP--ERSVAAWNSMISAFGFHSNGGKAIELFHEMRECGTRPTKSTFISL 687

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           L ACSH GL++EGL  ++ MLE     +  +H+ C+VD+LGRAGRL EAY+ IR MP +P
Sbjct: 688 LSACSHSGLVNEGLWYYSNMLELFNVEADTEHHVCMVDMLGRAGRLGEAYEFIRQMPTQP 747

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643
              VWGALL AC  HG++++G   A+ LFELEPEN G Y+ LS +Y A  RWKDA  +R 
Sbjct: 748 EPGVWGALLSACSYHGDLKMGREVAELLFELEPENVGYYISLSNMYVAAGRWKDAVELRR 807

Query: 644 VMDEKGLRKAPAHSLIEV 661
           ++ +KGL+K  A+SLI+V
Sbjct: 808 IIQDKGLKKPAAYSLIDV 825



 Score =  238 bits (607), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 162/535 (30%), Positives = 272/535 (50%), Gaps = 12/535 (2%)

Query: 44  PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR 103
           P  T L ++  RA    S+   LFDE+  R   L+N ++    +N     ++ +F+ ++ 
Sbjct: 8   PTSTSLLTAYSRA-ADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMG 66

Query: 104 LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163
            G    D+ T  IV+ A + +     G  LHG    TG   D+F+ N LI MY   GE+ 
Sbjct: 67  EG-VGLDSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELS 125

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
           ++  VF  M    ++SWN+++ G   N Y K++L  F  M  S  + D  S+   + A  
Sbjct: 126 SSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASA 185

Query: 224 YLKEIEMGRMIHELVAGGRLG-KNIAA---WNALVDMYVKCGSVNEARLVFDRMSERDVV 279
            L E+  G++IH    G +LG K+I+     N+L+ +Y +C  +  A ++F  M  +D+V
Sbjct: 186 LLGELSFGQVIHGW--GIKLGYKDISHNSFENSLISLYSQCRDIQAAEILFKEMKYKDIV 243

Query: 280 TWTSMINGYALNGDVRNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           +W +M++G ALN  +  A  L   MQ  G V+P+S+T+  ++  C+ L  L+ GR++H  
Sbjct: 244 SWNAMLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLLREGRAVHGL 303

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
           T+++ +  +  V  +LIDMY+KC  VK +  VF    ++  V WNA+++G   NG +R+A
Sbjct: 304 TLRREMGLDFSVTNSLIDMYSKCKDVKRAEHVFKAIPERDLVSWNAMISGYSQNGHSREA 363

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
             LFRQ+L    + + +TL ++LP+      LQ   +IHC+ ++ GF +       L+ +
Sbjct: 364 QHLFRQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLAVNSLMLM 423

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS-GVQPNE 517
           Y  CG L +   +   +     DIV W+ ++AG   +GH   A+  F  M Q   V  + 
Sbjct: 424 YINCGDLVACFSLLQTVSAA-ADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDS 482

Query: 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572
           V   + + AC +  LL  G  L    L+     S       ++ + GR G ++ A
Sbjct: 483 VALFNVISACGNLELLFAGGSLHGLALKTLME-SDIRVQNALITMYGRCGEIENA 536



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 8/154 (5%)

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
           G L+ +  ST L+  YS+     S+  +F EI    +D+++W+ +I     +     AV+
Sbjct: 2   GALAHLPTSTSLLTAYSRAADFSSSWALFDEILY--RDVILWNAMITASVENQCFGVAVN 59

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC--IVD 561
           LF E++  GV  +  T    + A SH G L +G  L      + +T   +D + C  ++D
Sbjct: 60  LFVELMGEGVGLDSTTLLIVVSASSHMGNLTQGRVLHGI---SFKTGLLSDSFLCNALID 116

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           +  + G L  +  +   M  +   + W +++  C
Sbjct: 117 MYAKCGELSSSECVFGGMEYRDIIS-WNSMMRGC 149


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/618 (34%), Positives = 346/618 (55%), Gaps = 10/618 (1%)

Query: 51  SSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGE- 106
           ++L+  YG    V     +F+ M ER+   +N+++  +++NG   +S   F  ML +GE 
Sbjct: 140 NALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREML-VGEE 198

Query: 107 -YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
            + PD  T   V+  C      + G+A+HG  +  G + +  V N LI MY     +  A
Sbjct: 199 SFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEA 258

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML--KSGVEPDCASVVSVLPACG 223
           + +FD   + ++VSWN++I GY +         +   M    + ++ D  ++++VLP C 
Sbjct: 259 QLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCL 318

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
              E++  + +H       L  N    NA +  Y +CG++  +  VFD M  + V +W +
Sbjct: 319 ERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNA 378

Query: 284 MINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN 343
           ++ GYA N D R AL L+  M   G+ P+  TIGSLL ACS +  L  G  +H + ++  
Sbjct: 379 LLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNG 438

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
           L  +  +  +L+ +Y  C     +  +F     +  V WN ++AG   NGL  +A+ LFR
Sbjct: 439 LAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFR 498

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
           QML + ++P +  +  +  A + L+ L+    +HC+ ++      + VS+ +ID+Y+K G
Sbjct: 499 QMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGG 558

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            +  + +IF  +  ++KD+  W+VIIAGYG+HG G+ A+ LF++M++ G++P++ TFT  
Sbjct: 559 CIGLSQRIFDRL--REKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGI 616

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           L ACSH GL+++GL+ FN ML  H    + +HYTC+VD+LGRAGR+D+A  LI  MP  P
Sbjct: 617 LMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDP 676

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643
              +W +LL +C IHGN+ LGE  A  L ELEPE P NYVL+S L++   +W D   VR 
Sbjct: 677 DSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRG 736

Query: 644 VMDEKGLRKAPAHSLIEV 661
            M + GL+K    S IEV
Sbjct: 737 RMKDIGLQKDAGCSWIEV 754



 Score =  306 bits (784), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 188/592 (31%), Positives = 307/592 (51%), Gaps = 17/592 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTH--LRSSLVRAY---GHVSNVRILFDEMSER 73
           L+Q     K I   ++LH  +  S        L + ++  Y   G  S+ R++FD++  +
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           + F +N ++  Y +N    D++ +F  ++ + E+ PDN+T P VIKAC  L    LG  +
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQII 123

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           HG         D FVGN LIAMY   G V+ A KVF+ M E ++VSWN++I G+ +N + 
Sbjct: 124 HGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFL 183

Query: 194 KEALVVFDWML--KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
           +E+   F  ML  +    PD A++V+VLP C   ++IE G  +H L     L + +   N
Sbjct: 184 QESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNN 243

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG--V 309
           +L+DMY KC  ++EA+L+FD+  ++++V+W SMI GYA   DV     L Q MQ E   +
Sbjct: 244 SLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKM 303

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
           + +  TI ++L  C     L+  + LH ++ +  L+   +V  A I  Y +C  +  S +
Sbjct: 304 KADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSER 363

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           VF     K    WNA+L G   N   RKA++L+ QM    ++P+  T+ SLL A + +  
Sbjct: 364 VFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKS 423

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L     IH + +R G      +   L+ +Y  CG   +A  +F    ++ + +V W+V+I
Sbjct: 424 LHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFD--GMEHRSLVSWNVMI 481

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           AGY  +G  + A++LF++M+  G+QP E+       ACS    L  G +L  F L+ H T
Sbjct: 482 AGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLT 541

Query: 550 CSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
               D +  + I+D+  + G +  +  +   +  K   A W  ++    IHG
Sbjct: 542 ---EDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDV-ASWNVIIAGYGIHG 589



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 114/227 (50%), Gaps = 8/227 (3%)

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLEC-EVIVETALIDMYAKCNLVKLSFQVFART 374
           +G LL AC     ++ GR LH         C + ++ T +I MY+ C     S  VF + 
Sbjct: 1   MGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKL 60

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE--PNDATLNSLLPAYAILADLQQ 432
            +K    WNAI++    N L   A+ +F + L+ V E  P++ TL  ++ A A L DL  
Sbjct: 61  RRKNLFQWNAIVSAYTRNELFEDAMSIFSE-LISVTEHKPDNFTLPCVIKACAGLLDLGL 119

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              IH    +   +S V V   LI +Y KCG +E A K+F  +P  ++++V W+ II G+
Sbjct: 120 GQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMP--ERNLVSWNSIICGF 177

Query: 493 GMHGHGETAVSLFKEMV--QSGVQPNEVTFTSALHACSHGGLLDEGL 537
             +G  + + + F+EM+  +    P+  T  + L  C+    +++G+
Sbjct: 178 SENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGM 224


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/539 (38%), Positives = 321/539 (59%), Gaps = 6/539 (1%)

Query: 131 IALHGRVLITG-FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           + LH  V   G    +T++   L A Y   G +  A+ +FD +   +   WN++I GY  
Sbjct: 42  LQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYAC 101

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N     AL ++  ML  G +PD  +   VL ACG L   EMGR +H LV  G L +++  
Sbjct: 102 NNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYV 161

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
            N+++ MY K G V  AR+VFDRM  RD+ +W +M++G+  NG+ R A  +F  M+ +G 
Sbjct: 162 GNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGF 221

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE---CEVIVETALIDMYAKCNLVKL 366
             +  T+ +LLSAC  +  LK G+ +H + ++       C   +  ++IDMY  C  V  
Sbjct: 222 VGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSC 281

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           + ++F     K  V WN++++G    G A +A+ELF +M+V    P++ T+ S+L A   
Sbjct: 282 ARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQ 341

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           ++ L+    +  Y+++ G++  V V T LI +Y+ CGSL  A ++F E+P  +K++   +
Sbjct: 342 ISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMP--EKNLPACT 399

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
           V++ G+G+HG G  A+S+F EM+  GV P+E  FT+ L ACSH GL+DEG ++F  M  +
Sbjct: 400 VMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRD 459

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
           +    R  HY+C+VDLLGRAG LDEAY +I  M LKP   VW ALL AC +H NV+L  +
Sbjct: 460 YSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVI 519

Query: 607 AAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           +A+ LFEL P+    YV LS +Y+A RRW+D ENVR ++ ++ LRK P++S +E+  ++
Sbjct: 520 SAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMV 578



 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 163/493 (33%), Positives = 282/493 (57%), Gaps = 11/493 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLF--THLRSSLVRAY---GHVSNVRILFDEMSER 73
           L+Q    +KS+    QLHA + T G L   T+L + L   Y   GH+   + +FD++  +
Sbjct: 28  LLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLK 87

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           +SFL+N++++ YA N +   +L ++L ML  G+  PDN+TYP V+KAC DL  R++G  +
Sbjct: 88  NSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQ-KPDNFTYPFVLKACGDLLLREMGRKV 146

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H  V++ G + D +VGN +++MY  FG+V+AAR VFD M    + SWNT++SG+ KN  A
Sbjct: 147 HALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEA 206

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE-LVAGGRLGK--NIAAW 250
           + A  VF  M + G   D  +++++L ACG + ++++G+ IH  +V  G  G+  N    
Sbjct: 207 RGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLM 266

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           N+++DMY  C SV+ AR +F+ +  +DVV+W S+I+GY   GD   AL LF  M   G  
Sbjct: 267 NSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAV 326

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           P+ +T+ S+L+AC+ +  L+ G ++ ++ +K+     V+V TALI MYA C  +  + +V
Sbjct: 327 PDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRV 386

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F    +K       ++ G   +G  R+A+ +F +ML + V P++    ++L A +    +
Sbjct: 387 FDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLV 446

Query: 431 QQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
            +   I   + R Y         + L+D+  + G L+ A+ +   + +K  +  VW+ ++
Sbjct: 447 DEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNED-VWTALL 505

Query: 490 AGYGMHGHGETAV 502
           +   +H + + AV
Sbjct: 506 SACRLHRNVKLAV 518


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/637 (32%), Positives = 360/637 (56%), Gaps = 11/637 (1%)

Query: 33  KQLHAFIITSG---PLFTHLRSSLVRAYGHVS---NVRILFDEMSERSSFLYNTVMKMYA 86
           KQ+H  ++ SG    +F  + ++LV  Y       + + LFDE+ ER+   +N +   Y 
Sbjct: 177 KQVHGVVVVSGFEGDVF--VANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYV 234

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           Q     +++ +F  M+ L    P+ ++   ++ ACT L     G  +HG ++  G+D D 
Sbjct: 235 QIDFCGEAVGLFYEMV-LSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDP 293

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
           F  N L+ MY   G++  A  VF+ + +  +VSWN +I+G   + + ++AL +   M +S
Sbjct: 294 FSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRS 353

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           G+ P+  ++ S L AC  +   E+GR +H  +    +  ++     LVDMY KC  + +A
Sbjct: 354 GICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDA 413

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
           R+ F+ + E+D++ W ++I+GY+   +   AL LF  M  EG+  N  T+ ++L + + L
Sbjct: 414 RMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGL 473

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             +   R +H  ++K     ++ V  +LID Y KC+ V+ + ++F   +    V + +++
Sbjct: 474 QVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMI 533

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
                 G   +A++LF +M    ++P+    +SLL A A L+  +Q   +H ++++YGF+
Sbjct: 534 TAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFV 593

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
             +     L+++Y+KCGS++ A + FSE  + ++ IV WS +I G   HGHG  A+ LF 
Sbjct: 594 LDIFAGNSLVNMYAKCGSIDDAGRAFSE--LTERGIVSWSAMIGGLAQHGHGRQALQLFN 651

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           +M++ GV PN +T  S L AC+H GL+ E    F  M E        +HY C++DLLGRA
Sbjct: 652 QMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRA 711

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           G+++EA +L+  MP +   +VWGALLGA  IH +VELG  AA+ LF LEPE  G +VLL+
Sbjct: 712 GKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLA 771

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            +Y++  +W++   VR +M +  ++K P  S IEV++
Sbjct: 772 NIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKD 808



 Score =  292 bits (748), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 189/595 (31%), Positives = 316/595 (53%), Gaps = 25/595 (4%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSN---VRILFDEMSER 73
           KL+ Q   TKS+    Q+HA I  SG      +R+ L+  Y    N    R L DE SE 
Sbjct: 61  KLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEP 120

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
               ++ ++  YAQNG    +L  F  M  LG    + +T+  V+KAC+ +   ++G  +
Sbjct: 121 DLVSWSALISGYAQNGLGGGALMAFHEMHLLG-VKCNEFTFSSVLKACSIVKDLRIGKQV 179

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           HG V+++GF+ D FV N L+ MY    E   ++++FD + E +VVSWN L S Y +  + 
Sbjct: 180 HGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFC 239

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW--N 251
            EA+ +F  M+ SG++P+  S+ S++ AC  L++   G++IH  +   +LG +   +  N
Sbjct: 240 GEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLI--KLGYDWDPFSAN 297

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           ALVDMY K G + +A  VF+++ + D+V+W ++I G  L+     AL L   M+  G+ P
Sbjct: 298 ALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICP 357

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           N  T+ S L AC+ +   + GR LH+  +K ++E ++ V   L+DMY+KC+L++ +   F
Sbjct: 358 NIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAF 417

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
               +K  + WNAI++G        +A+ LF +M  E +  N  TL+++L + A L  + 
Sbjct: 418 NLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVH 477

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               +H   ++ GF S + V   LID Y KC  +E A +IF E  I   D+V ++ +I  
Sbjct: 478 VCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTI--GDLVSFTSMITA 535

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL------FNFMLE 545
           Y  +G GE A+ LF EM    ++P+    +S L+AC++    ++G  L      + F+L+
Sbjct: 536 YAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLD 595

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
                S       +V++  + G +D+A      +  +     W A++G    HG+
Sbjct: 596 IFAGNS-------LVNMYAKCGSIDDAGRAFSELTERGI-VSWSAMIGGLAQHGH 642



 Score =  256 bits (653), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 163/540 (30%), Positives = 271/540 (50%), Gaps = 35/540 (6%)

Query: 99  LGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMN 158
           L ++  G + P + +Y  ++  C      + G+ +H  +  +G   D  + N LI +Y  
Sbjct: 44  LNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSK 103

Query: 159 FGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSV 218
                 ARK+ D   E  +VSW+ LISGY +N     AL+ F  M   GV+ +  +  SV
Sbjct: 104 CRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSV 163

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
           L AC  +K++ +G+ +H +V       ++   N LV MY KC    +++ +FD + ER+V
Sbjct: 164 LKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNV 223

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           V+W ++ + Y        A+GLF  M   G++PN  ++ S+++AC+ L    RG+ +H +
Sbjct: 224 VSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGY 283

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
            IK   + +     AL+DMYAK   +  +  VF +  +   V WNA++AGCV +    +A
Sbjct: 284 LIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQA 343

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
           +EL  QM    + PN  TL+S L A A +   +    +H  L++    S + VS GL+D+
Sbjct: 344 LELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDM 403

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           YSKC  LE A   F+ +P  +KD++ W+ II+GY  +     A+SLF EM + G+  N+ 
Sbjct: 404 YSKCDLLEDARMAFNLLP--EKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQT 461

Query: 519 TFTSAL---------HACS--HGGLLDEGL--DLF--NFMLENHQTCSRADH-------- 555
           T ++ L         H C   HG  +  G   D++  N +++++  CS  +         
Sbjct: 462 TLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEEC 521

Query: 556 -------YTCIVDLLGRAGRLDEAYDL---IRTMPLKPTHAVWGALLGACVIHGNVELGE 605
                  +T ++    + G+ +EA  L   ++ M LKP   V  +LL AC      E G+
Sbjct: 522 TIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGK 581


>gi|255561305|ref|XP_002521663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539054|gb|EEF40650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 578

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/580 (36%), Positives = 331/580 (57%), Gaps = 11/580 (1%)

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G +H  LK F   L   +   + Y  P VIKAC+       GI L+  VL +G D D  +
Sbjct: 5   GLNHQILK-FYKELHSSDIYANAYIIPSVIKACSFSNCHHFGIQLYSIVLKSGLDSDFVI 63

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N  I+ Y      ++A KVFD M     +SWN +I+GYF+N Y  +  ++F  M + G+
Sbjct: 64  CNSFISFYAKSSCTESALKVFDTMPLKDPISWNCIINGYFQNGYFTQGFIMFKEMYECGI 123

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELV-AGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
            P    V SV+  C  L ++++GR IH LV   GR+ K I    +LVD Y K G    A 
Sbjct: 124 VPKPELVASVVSVCVRLGDMKLGRAIHALVLIDGRIAKEIFVLTSLVDWYFKSGDSLMAL 183

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VFD++  ++VV+WT++++G + N D   AL  F+ MQ  GVRPN +T+ ++L A + L 
Sbjct: 184 RVFDQIEVKNVVSWTALVSGCSANLDYNMALDCFRAMQINGVRPNRVTLIAILPAFAELG 243

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC----NLVKLSFQVFARTSKKKTVPWN 383
             K G+ +H +  +   + +    ++LI +Y +      L KL+F+   R++ K  V W+
Sbjct: 244 CAKTGKEIHGYAFRHGFDLDHHFLSSLIHIYCRSREGLQLAKLTFE---RSNVKDVVMWS 300

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           +I+     +  + +A++LFR M  +  EPN  TL +++ A   L  L+     H Y+++ 
Sbjct: 301 SIIGSYCRSADSIEALKLFRWMRADGTEPNSVTLLAVITACTTLTSLKNGYGTHGYIVKC 360

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
           G      +   LI++YSKCG + ++H+IF E+ IKD   V WS +I  YG+HGHG+ A+ 
Sbjct: 361 GLNFDTYIGNALINMYSKCGCVVASHQIFKEMHIKDS--VSWSTLITAYGLHGHGKEALC 418

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563
           LF EM   GV+P+ +TF + L AC+H GL+ EG  +F+ + ++ +     +HY C+VDLL
Sbjct: 419 LFHEMQLQGVEPDAMTFLAVLSACNHSGLVKEGQQIFDNVKKDGKVSLTVEHYACLVDLL 478

Query: 564 GRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623
           G++G++D+A+D++R MP+KP+  +W +L+ AC IHG +E+ E  A+ L + EP N  N+ 
Sbjct: 479 GKSGKVDDAFDILRAMPMKPSTTIWSSLVSACKIHGRLEIAERLAQELIKSEPSNAANHT 538

Query: 624 LLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           LLS +Y+    W   E+VR +M  +GL K    S +   N
Sbjct: 539 LLSMIYAESGNWFAVEDVRRLMRVQGLSKCYGFSQVSAGN 578



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 136/449 (30%), Positives = 227/449 (50%), Gaps = 5/449 (1%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD M  +    +N ++  Y QNG       MF  M   G   P       V+  C  L 
Sbjct: 83  VFDTMPLKDPISWNCIINGYFQNGYFTQGFIMFKEMYECG-IVPKPELVASVVSVCVRLG 141

Query: 126 WRKLGIALHGRVLITG-FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
             KLG A+H  VLI G    + FV   L+  Y   G+   A +VFD +   +VVSW  L+
Sbjct: 142 DMKLGRAIHALVLIDGRIAKEIFVLTSLVDWYFKSGDSLMALRVFDQIEVKNVVSWTALV 201

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           SG   N     AL  F  M  +GV P+  +++++LPA   L   + G+ IH         
Sbjct: 202 SGCSANLDYNMALDCFRAMQINGVRPNRVTLIAILPAFAELGCAKTGKEIHGYAFRHGFD 261

Query: 245 KNIAAWNALVDMYVKC-GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
            +    ++L+ +Y +    +  A+L F+R + +DVV W+S+I  Y  + D   AL LF+ 
Sbjct: 262 LDHHFLSSLIHIYCRSREGLQLAKLTFERSNVKDVVMWSSIIGSYCRSADSIEALKLFRW 321

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M+ +G  PNS+T+ ++++AC++L  LK G   H + +K  L  +  +  ALI+MY+KC  
Sbjct: 322 MRADGTEPNSVTLLAVITACTTLTSLKNGYGTHGYIVKCGLNFDTYIGNALINMYSKCGC 381

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           V  S Q+F     K +V W+ ++     +G  ++A+ LF +M ++ VEP+  T  ++L A
Sbjct: 382 VVASHQIFKEMHIKDSVSWSTLITAYGLHGHGKEALCLFHEMQLQGVEPDAMTFLAVLSA 441

Query: 424 YAILADLQQAMNIHCYLIRYGFLSV-VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
                 +++   I   + + G +S+ VE    L+D+  K G ++ A  I   +P+K    
Sbjct: 442 CNHSGLVKEGQQIFDNVKKDGKVSLTVEHYACLVDLLGKSGKVDDAFDILRAMPMK-PST 500

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
            +WS +++   +HG  E A  L +E+++S
Sbjct: 501 TIWSSLVSACKIHGRLEIAERLAQELIKS 529



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 89/206 (43%), Gaps = 3/206 (1%)

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
           V  GL  + ++ ++++    +  N   + S++ A +        + ++  +++ G  S  
Sbjct: 2   VSKGLNHQILKFYKELHSSDIYANAYIIPSVIKACSFSNCHHFGIQLYSIVLKSGLDSDF 61

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            +    I  Y+K    ESA K+F  +P+KD   + W+ II GY  +G+      +FKEM 
Sbjct: 62  VICNSFISFYAKSSCTESALKVFDTMPLKDP--ISWNCIINGYFQNGYFTQGFIMFKEMY 119

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           + G+ P      S +  C   G +  G  +   +L + +        T +VD   ++G  
Sbjct: 120 ECGIVPKPELVASVVSVCVRLGDMKLGRAIHALVLIDGRIAKEIFVLTSLVDWYFKSGDS 179

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGAC 595
             A  +   + +K     W AL+  C
Sbjct: 180 LMALRVFDQIEVKNV-VSWTALVSGC 204


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 246/696 (35%), Positives = 372/696 (53%), Gaps = 76/696 (10%)

Query: 27  KSIAGTKQLHAFIITSGPLFTHLR--SSLVRAY---GHVSNVRILFDEM---SERSSFLY 78
           K++   K LH   I +G L       ++L+  Y     ++N  +L ++    S  S + +
Sbjct: 35  KTLTQAKLLHQQYIINGHLLNSYTNVTNLIYTYISSNSITNAILLLEKNVTPSHSSVYWW 94

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
           N +++      + + +L++F  M  L  + PD+YT+P V KAC +++  +LG ++HG V+
Sbjct: 95  NQLIRHALHFNSPNTALRLFRRMKTL-HWTPDHYTFPFVFKACGEISNFELGASIHGCVI 153

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV---VSWNTLISGYFKNAYAKE 195
             GF+ + FV N +I+MY     V  ARKVFD +    +   V+WN+++S Y        
Sbjct: 154 RLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNV 213

Query: 196 ALVVFDWM-LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           A+ +F  M +  G+ PD   VV++LP CGYL     GR +H       L +++   NALV
Sbjct: 214 AVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALV 273

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV----- 309
           DMY KCG + +A  VF+RM  +DVVTW +M+ GY+ NG   +AL LF  M+ E +     
Sbjct: 274 DMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVV 333

Query: 310 ------------------------------RPNSLTIGSLLSACSSLYYLKRGRSLHAWT 339
                                         RPN +T+ SLLSAC+S+  L  G+  H ++
Sbjct: 334 TWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYS 393

Query: 340 IKQNLECE-------VIVETALIDMYAKCNLVKLSFQVFARTSKKK--TVPWNAILAGCV 390
           +K  L+ E       + V  ALIDMYAKC  ++++  +F     K    V W  ++ G  
Sbjct: 394 VKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYA 453

Query: 391 HNGLARKAVELFRQM--LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS- 447
            +G A  A++LF +M  +   + PND T++ +L A A LA L+    IH Y++R   +  
Sbjct: 454 QHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDS 513

Query: 448 -VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
            V+ V+  LID+YSK G +++A  +F  +    ++ V W+ ++ GYGMHG  E A  +F 
Sbjct: 514 DVLFVANCLIDMYSKSGDVDTAQVVFDSM--SKRNAVSWTSLLTGYGMHGRSEDAFRVFD 571

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           EM +  +  + +TF   L+ACSH G+ D G+D               +HY C+VDLLGRA
Sbjct: 572 EMRKEALVLDGITFLVVLYACSHSGM-DFGVD------------PGVEHYACMVDLLGRA 618

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           GRL EA  LI  MP++PT  VW ALL AC IH N EL E AAK L EL+ +N G Y LLS
Sbjct: 619 GRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELAEFAAKKLLELKADNDGTYTLLS 678

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
            +Y+  RRWKD   +  +M   G++K P  S ++ R
Sbjct: 679 NIYANARRWKDVARIGYLMKRTGIKKIPGWSWVKGR 714


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/648 (32%), Positives = 346/648 (53%), Gaps = 78/648 (12%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLRS----SLVRAYGHVSNVRILFDEMSERS 74
           ++Q  A +KS+   K++H+ I ++      +      SL    G +   R +FD M +++
Sbjct: 105 VLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKN 164

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
            +L+N ++  YA+ G   +S+ +F  M+  G                           + 
Sbjct: 165 VYLWNFMVSEYAKIGDFKESICLFKIMVEKG---------------------------IE 197

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           G+                          ++A ++FD + +  V+SWN++ISGY  N   +
Sbjct: 198 GK------------------------RPESASELFDKLCDRDVISWNSMISGYVSNGLTE 233

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
             L ++  M+  G++ D A+++SVL  C     + +G+ +H L       + I   N L+
Sbjct: 234 RGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLL 293

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           DMY KCG ++ A  VF++M ER+VV+WTSMI GY  +G    A+ L Q M+ EGV+ + +
Sbjct: 294 DMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVV 353

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
              S+L AC+    L  G+ +H +    N+E  + V  AL+DMY KC  +  +  VF+  
Sbjct: 354 ATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTM 413

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
             K  + WN ++                       ++P+  T+  +LPA A L+ L++  
Sbjct: 414 VVKDIISWNTMIGE---------------------LKPDSRTMACILPACASLSALERGK 452

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            IH Y++R G+ S   V+  L+D+Y KCG L  A  +F  IP   KD+V W+V+I+GYGM
Sbjct: 453 EIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP--SKDLVSWTVMISGYGM 510

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           HG+G  A++ F EM  +G++P+EV+F S L+ACSH GLL++G   F  M  +     + +
Sbjct: 511 HGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLE 570

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HY C+VDLL R G L +AY+ I T+P+ P   +WGALL  C I+ ++EL E  A+ +FEL
Sbjct: 571 HYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFEL 630

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           EPEN G YVLL+ +Y+   +W++ + +R+ + +KGLRK P  S IE++
Sbjct: 631 EPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIK 678


>gi|357143265|ref|XP_003572861.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Brachypodium distachyon]
          Length = 697

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 227/653 (34%), Positives = 368/653 (56%), Gaps = 14/653 (2%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSGPLFT--HLRSSLVRAYGHVSNVRILFDEMSERSS 75
           KL++  A + +     +LHA ++ SG L +  HL S ++ +Y      R LFDE+   + 
Sbjct: 9   KLLEAAADSSTPVAAARLHAHLLRSGHLHSSHHLTSHVLASYP-TGLARHLFDEIPVPTP 67

Query: 76  FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHG 135
            L N +++ + +     D+L + +  LR+    PD +T  +++KAC  L     G ALH 
Sbjct: 68  RLANALLRAHVRARQWCDAL-LLIPCLRV---RPDAFTLSLLLKACAMLPALAHGRALHA 123

Query: 136 RVL--ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
             +   T +  D FV   L+ MY     +  +   ++A  E  +V   ++++GY +N  A
Sbjct: 124 LAIRSCTAYT-DAFVAAALVHMYAKCRGMVGSINAYNAFSEPDMVLRTSMVTGYEQNRMA 182

Query: 194 KEALVVFD-WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            EAL  F   ++  G  P   ++VSV+ A   LK++  G+  H  V       ++   NA
Sbjct: 183 AEALEFFSRHVVGQGFMPSPVTLVSVISAAAQLKDVLNGQACHAFVIRNNFEYDLVLVNA 242

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           ++  Y++ G+V  AR +F+ M+E+DVVTW+ M+ GY  +GD+  AL  ++ M   G++PN
Sbjct: 243 ILGFYMRIGAVQAARRLFEGMTEKDVVTWSCMVTGYVQSGDICEALTAYKKMVEAGIKPN 302

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           ++T+ S++ ACS    ++ GR +H   +K   E E+ V TAL+DMY KC+  + + Q+F 
Sbjct: 303 AVTVVSVVQACSLAPDIEEGRRVHDIAVKIGCELEMTVATALVDMYMKCSCHEEAMQLFC 362

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           R SKK  V W  +++G   NGL  +++ +F+ ML     P+  T+  +L A +    ++Q
Sbjct: 363 RMSKKDAVAWAVVISGFTQNGLPDESMRVFKCMLFGGPFPDAVTMVKVLAACSESGVMRQ 422

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
           A  +H YL+  GF   + V+  L+D+YSKCG+L  A ++F      +KD+V+WS +I+GY
Sbjct: 423 AFCLHGYLVITGFCDKIFVAAALVDLYSKCGNLGCAVRVFES--AMEKDVVLWSSMISGY 480

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
           G+HG G+ AV LF+ MV S V+PN +TF S L ACSH GL+ EG  +F  M + +     
Sbjct: 481 GVHGLGQQAVELFQMMVASSVKPNSLTFVSVLSACSHSGLVQEGKRIFESMTQVYGVVPN 540

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
           A H++ +VDLLGRAG L EA  L+        H  W ALL AC  H + E+ EV A  L 
Sbjct: 541 AVHHSAMVDLLGRAGELQEAAKLLHGNGRADAH-TWCALLAACRAHHDTEMSEVVAAKLL 599

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           +L+P++ G Y LL+ +Y+    W  A+  R+++ ++GL K P  S +E+ N++
Sbjct: 600 KLDPDHAGYYNLLNNIYTFDENWSSAKENRNIIRDRGLNKVPGCSAVELNNVM 652


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/604 (35%), Positives = 347/604 (57%), Gaps = 4/604 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G ++  R +FDEM  R    +N+++  Y+ +G   ++L+++   L+     PD++T   V
Sbjct: 155 GLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIY-HELKNSWIVPDSFTVSSV 213

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + A  +L   K G  LHG  L +G +    V N L+AMY+ F     AR+VFD M     
Sbjct: 214 LPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDS 273

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VS+NT+I GY K    +E++ +F   L    +PD  +V SVL ACG+L+++ + + I+  
Sbjct: 274 VSYNTMICGYLKLEMVEESVRMFLENLDQ-FKPDLLTVSSVLRACGHLRDLSLAKYIYNY 332

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +            N L+D+Y KCG +  AR VF+ M  +D V+W S+I+GY  +GD+  A
Sbjct: 333 MLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEA 392

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + LF++M     + + +T   L+S  + L  LK G+ LH+  IK  +  ++ V  ALIDM
Sbjct: 393 MKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDM 452

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAKC  V  S ++F+      TV WN +++ CV  G     +++  QM    V P+ AT 
Sbjct: 453 YAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATF 512

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
              LP  A LA  +    IHC L+R+G+ S +++   LI++YSKCG LE++ ++F    +
Sbjct: 513 LVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFER--M 570

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
             +D+V W+ +I  YGM+G GE A+  F +M +SG+ P+ V F + ++ACSH GL+DEGL
Sbjct: 571 SRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGL 630

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             F  M  +++     +HY C+VDLL R+ ++ +A + I+ MP+KP  ++W ++L AC  
Sbjct: 631 ACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRT 690

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
            G++E  E  ++ + EL P++PG  +L S  Y+A+R+W     +R  + +K + K P +S
Sbjct: 691 SGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYS 750

Query: 658 LIEV 661
            IEV
Sbjct: 751 WIEV 754



 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 183/618 (29%), Positives = 316/618 (51%), Gaps = 24/618 (3%)

Query: 24  AATKSIAGTKQLHAFIITSGPLFTHLRS-SLVRAYGH----VSNVRILFDEMSERSSFLY 78
           +++ ++   +++HA +I+ G   +   S  L+  Y H     S++ +       ++ +L+
Sbjct: 15  SSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLW 74

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
           N++++ +++NG   ++L+ F G LR  + +PD YT+P VIKAC  L   ++G  ++ ++L
Sbjct: 75  NSIIRAFSKNGLFPEALE-FYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQIL 133

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
             GF+ D FVGN L+ MY   G +  AR+VFD M    +VSWN+LISGY  + Y +EAL 
Sbjct: 134 DMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALE 193

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           ++  +  S + PD  +V SVLPA G L  ++ G+ +H       +   +   N LV MY+
Sbjct: 194 IYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYL 253

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           K     +AR VFD M  RD V++ +MI GY     V  ++ +F L   +  +P+ LT+ S
Sbjct: 254 KFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMF-LENLDQFKPDLLTVSS 312

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           +L AC  L  L   + ++ + +K     E  V   LID+YAKC  +  +  VF     K 
Sbjct: 313 VLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKD 372

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
           TV WN+I++G + +G   +A++LF+ M++   + +  T   L+     LADL+    +H 
Sbjct: 373 TVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHS 432

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
             I+ G    + VS  LID+Y+KCG +  + KIFS +     D V W+ +I+     G  
Sbjct: 433 NGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGT--GDTVTWNTVISACVRFGDF 490

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD----LFNFMLENHQTCSRAD 554
            T + +  +M +S V P+  TF   L  C+       G +    L  F  E+      A 
Sbjct: 491 ATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNA- 549

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
               ++++  + G L+ +  +   M  +     W  ++ A  ++G    GE A +   ++
Sbjct: 550 ----LIEMYSKCGCLENSSRVFERMSRRDV-VTWTGMIYAYGMYGE---GEKALETFADM 601

Query: 615 EPEN--PGNYVLLSKLYS 630
           E     P + V ++ +Y+
Sbjct: 602 EKSGIVPDSVVFIAIIYA 619



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 123/238 (51%), Gaps = 6/238 (2%)

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
            R +S  I   LS+ S+L  L+R   +HA  I   L+        LID Y+       S 
Sbjct: 3   TRVSSPFISRALSSSSNLNELRR---IHALVISLGLDSSDFFSGKLIDKYSHFREPASSL 59

Query: 369 QVFARTSKKKTV-PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
            VF R S  K V  WN+I+     NGL  +A+E + ++    V P+  T  S++ A A L
Sbjct: 60  SVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGL 119

Query: 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
            D +    ++  ++  GF S + V   L+D+YS+ G L  A ++F E+P+  +D+V W+ 
Sbjct: 120 FDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPV--RDLVSWNS 177

Query: 488 IIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           +I+GY  HG+ E A+ ++ E+  S + P+  T +S L A  +  ++ +G  L  F L+
Sbjct: 178 LISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALK 235


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 224/656 (34%), Positives = 365/656 (55%), Gaps = 19/656 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFII---------TSGPLFTHLRSSLVRAYGHVSNVRILFDE 69
           L+    A  S A   +LH  ++          +G L T L S + R    +   R +FD 
Sbjct: 21  LLAHLDACASRANLAELHGRLVRAHLGSDPCVAGRLVTLLASPVSRH--DMPYARKVFDR 78

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA-W-- 126
           M++ ++ ++N +++ Y    A  D+L++F  M R G  +PDNYT   V ++    A W  
Sbjct: 79  MAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSG-VSPDNYTMAAVAQSSAAFASWKG 137

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
           R  G A+H  V   GF  D FV + LI  Y     V+ ARKVF+ M E  VVSW  +IS 
Sbjct: 138 RATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMISA 197

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
           + +       L   D M   G +P+  +++S+L ACG ++ ++ G  ++  V    +  +
Sbjct: 198 FAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEAD 257

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           +   NAL+ MYVKCG +++A   F  M  R+  +W ++I+G+  NG  + AL +F+ M  
Sbjct: 258 VDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLS 317

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
           +GV P+ +T+ S+LS  + L  L++GR LH +     + C++I++ +LI+MYAKC  +  
Sbjct: 318 DGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAA 377

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           +  +F   +++  V W A++ G V     R A  LF  M V  V  ++  L SLL A + 
Sbjct: 378 AEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQ 437

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           L  L +   IH Y+      + + + + L+D+Y+KCG +++A +IFS +  + K  + W+
Sbjct: 438 LGALDKGREIHSYIKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSRM--RHKQTLAWN 495

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQ-SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
            +I G    G G+ AV+LF+++++    +P+ +T    L AC+H G++DEGL  FN ML 
Sbjct: 496 AMIGGLASQGQGKEAVALFEQLLKLRDPKPDAITLKVVLCACTHVGMVDEGLHYFNLML- 554

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
                   +HY CIVDLLGRAG LDEAY+ I+ MP++P   +WG+LL AC +H  +ELG+
Sbjct: 555 TLGIVPDNEHYGCIVDLLGRAGLLDEAYNFIQKMPIQPNPVIWGSLLAACRVHHRMELGK 614

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +  + + +L P + G +VL+S L++   +W D E VR +M  + + K+P HS I+V
Sbjct: 615 IIGQHIIDLAPNDVGAHVLISNLHAEEGQWDDVEQVRGMMGSRRVEKSPGHSSIQV 670


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/619 (35%), Positives = 348/619 (56%), Gaps = 8/619 (1%)

Query: 48  HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL 104
           ++ SSLV  Y   G +   + +FD ++E++  L+N ++  Y QNG +++ +++F  M   
Sbjct: 363 YVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSC 422

Query: 105 GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA 164
           G Y PD++TY  ++ AC  L +  LG  LH  ++   F  + FVGN L+ MY   G ++ 
Sbjct: 423 GFY-PDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALED 481

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
           AR+ F+ +     VSWN +I GY +     EA  +F  M   G+ PD  S+ S+L AC  
Sbjct: 482 ARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACAS 541

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           ++ +E G+ +H L         + + ++L+DMY KCG+++ A  +   M ER VV+  ++
Sbjct: 542 VRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNAL 601

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           I GYA   ++  A+ LF+ M  EG+    +T  SLL AC     L  GR +H+  +K  L
Sbjct: 602 IAGYA-QINLEQAVNLFRDMLVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILKMGL 660

Query: 345 ECE-VIVETALIDMYAKCNLVKLSFQVFARTSKKKT-VPWNAILAGCVHNGLARKAVELF 402
           + +   +  +L+ MY        +  +F+  S  K+ V W A+++G   N  +  A++L+
Sbjct: 661 QLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLY 720

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
           ++M    V P+ AT  S L A A+++ ++     H  +   GF S    S+ L+D+Y+KC
Sbjct: 721 KEMRSCNVLPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKC 780

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G ++S+ ++F E+  K KD++ W+ +I G+  +G+ E A+ +F EM QS V P++VTF  
Sbjct: 781 GDVKSSMQVFKEMSRK-KDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLG 839

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
            L ACSH G + EG  +F+ M+  +    RADH  C+VDLLGR G L EA + I  +  +
Sbjct: 840 VLTACSHSGRVSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFE 899

Query: 583 PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642
           P   VW  +LGAC IHG+   G+ AA+ L ELEP+N   YVLLS +Y+A   W +   +R
Sbjct: 900 PDAKVWATMLGACRIHGDDIRGQQAAEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLR 959

Query: 643 DVMDEKGLRKAPAHSLIEV 661
             M EKG++K P  S I V
Sbjct: 960 REMREKGVKKLPGCSWIVV 978



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 180/602 (29%), Positives = 289/602 (48%), Gaps = 66/602 (10%)

Query: 2   NGPSHHTLPKT-THLVIKLVQ-------------------QYAATKSIAGTKQLHAFIIT 41
           N PSH   P+  TH++   +Q                   Q++ T  I   + L     +
Sbjct: 33  NHPSHTLKPRIYTHILQNCLQKSKQVKTHSLFDEIPQRLSQFSTTNKIIHAQSLKLGFWS 92

Query: 42  SGPLFTHLRSSLVRAYGHVSNVRIL---FDEMSERSSFLYNTVMKMYAQNGASHDSLKMF 98
            G L     + +V  Y   ++V      F ++ ++    +N+++ M+++ G  H  +K F
Sbjct: 93  KGVL----GNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYF 148

Query: 99  LGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMN 158
            G+L      P+ +T+ IV+ +C  L   K G  +H  V+  GF+  ++    LI MY  
Sbjct: 149 -GLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAK 207

Query: 159 FGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSV 218
              +  AR +FD   E   VSW ++I GY K    +EA+ VF  M K G EPD  + V+V
Sbjct: 208 CNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTV 267

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
           + A                                   YV  G ++ A  +F RM  R+V
Sbjct: 268 INA-----------------------------------YVDLGRLDNASDLFSRMPNRNV 292

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           V W  MI+G+A  G    A+  FQ M+  G++    T+GS+LSA +SL  L  G  +HA 
Sbjct: 293 VAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAE 352

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
            +KQ L   V V ++L+ MYAKC  ++ + +VF   +++  V WNA+L G V NG A + 
Sbjct: 353 ALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEV 412

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
           +ELF  M      P+D T +S+L A A L  L     +H  +I+  F S + V   L+D+
Sbjct: 413 MELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDM 472

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           Y+K G+LE A + F    I+++D V W+VII GY        A  LF+ M   G+ P+EV
Sbjct: 473 YAKSGALEDARQQFE--LIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEV 530

Query: 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578
           +  S L AC+    L++G  +    ++  Q  ++    + ++D+  + G +D A+ ++  
Sbjct: 531 SLASILSACASVRGLEQGKQVHCLSVKTGQE-TKLYSGSSLIDMYAKCGAIDSAHKILAC 589

Query: 579 MP 580
           MP
Sbjct: 590 MP 591



 Score =  251 bits (642), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 155/517 (29%), Positives = 263/517 (50%), Gaps = 43/517 (8%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+H  ++  G    ++   +L+  Y     +++ R +FD   E     + +++  Y + 
Sbjct: 180 RQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKV 239

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   +++K+F  M ++G+  PD   +  VI A                            
Sbjct: 240 GLPEEAVKVFQEMEKVGQ-EPDQVAFVTVINA---------------------------- 270

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
                  Y++ G +  A  +F  M   +VV+WN +ISG+ K  Y  EA+  F  M K+G+
Sbjct: 271 -------YVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGI 323

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +   +++ SVL A   L  ++ G ++H       L  N+   ++LV MY KCG +  A+ 
Sbjct: 324 KSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKK 383

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VFD ++E++VV W +M+ GY  NG     + LF  M+  G  P+  T  S+LSAC+ L Y
Sbjct: 384 VFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKY 443

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L  G  LH+  IK      + V  AL+DMYAK   ++ + Q F     +  V WN I+ G
Sbjct: 444 LDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVG 503

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            V      +A  LFR+M +  + P++ +L S+L A A +  L+Q   +HC  ++ G  + 
Sbjct: 504 YVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETK 563

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           +   + LID+Y+KCG+++SAHKI + +P  ++ +V  + +IAGY    + E AV+LF++M
Sbjct: 564 LYSGSSLIDMYAKCGAIDSAHKILACMP--ERSVVSMNALIAGYA-QINLEQAVNLFRDM 620

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           +  G+   E+TF S L AC     L+ G  + + +L+
Sbjct: 621 LVEGINSTEITFASLLDACHEQQKLNLGRQIHSLILK 657


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/635 (34%), Positives = 344/635 (54%), Gaps = 8/635 (1%)

Query: 34  QLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEM-SERSSFLYNTVMKMYAQN 88
           Q+HA  + +G        +   ++   +G + + R +FDE  SER++  +N +M  Y +N
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKN 180

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
               D++++F  M+  G   P  + +  V+ ACT       G  +H  V+  G++ D F 
Sbjct: 181 DQCGDAIQVFGEMVWSG-IQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFT 239

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+ MY+  G V  A  +F+ M +  VVSWN LISG   N +   A+ +   M  SG+
Sbjct: 240 ANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGL 299

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P+   + S+L AC      ++GR IH  +       +      LVDMY K   +++A  
Sbjct: 300 VPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMK 359

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VFD MS RD++ W ++I+G +  G    A  +F  ++ EG+  N  T+ ++L + +SL  
Sbjct: 360 VFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEA 419

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
               R +HA   K     +  V   LID Y KC+ +  + +VF   S    +   +++  
Sbjct: 420 ASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITA 479

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
                    A++LF +ML + +EP+   L+SLL A A L+  +Q   +H +LI+  F+S 
Sbjct: 480 LSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSD 539

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
                 L+  Y+KCGS+E A   FS +P  ++ +V WS +I G   HGHG+ A+ LF  M
Sbjct: 540 AFAGNALVYTYAKCGSIEDAELAFSSLP--ERGVVSWSAMIGGLAQHGHGKRALELFGRM 597

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
           V  G+ PN +T TS L AC+H GL+DE    FN M E        +HY+C++DLLGRAG+
Sbjct: 598 VDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGK 657

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           LD+A +L+ +MP +   +VWGALLGA  +H + ELG++AA+ LF LEPE  G +VLL+  
Sbjct: 658 LDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANT 717

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           Y++   W +   VR +M +  ++K PA S +EV++
Sbjct: 718 YASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKD 752



 Score =  302 bits (773), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 192/624 (30%), Positives = 319/624 (51%), Gaps = 18/624 (2%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSN---VRILF 67
           ++   + + + +YAA +++     LHA ++ SG L + LR+ L+  Y         R +F
Sbjct: 2   RSAGTISQQLTRYAAAQALLPGAHLHANLLKSGFLAS-LRNHLISFYSKCRRPCCARRVF 60

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           DE+ +     +++++  Y+ NG    +++ F GM R      + +  P+V+K   D    
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGM-RAEGVCCNEFALPVVLKCVPDA--- 116

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD-AMWEHSVVSWNTLISG 186
           +LG  +H   + TGF  D FV N L+AMY  FG +  AR+VFD A  E + VSWN L+S 
Sbjct: 117 QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSA 176

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
           Y KN    +A+ VF  M+ SG++P       V+ AC   + I+ GR +H +V      K+
Sbjct: 177 YVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKD 236

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           +   NALVDMYVK G V+ A ++F++M + DVV+W ++I+G  LNG    A+ L   M+ 
Sbjct: 237 VFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKS 296

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
            G+ PN   + S+L AC+       GR +H + IK N + +  +   L+DMYAK + +  
Sbjct: 297 SGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 356

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           + +VF   S +  + WNA+++GC H G   +A  +F  +  E +  N  TL ++L + A 
Sbjct: 357 AMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTAS 416

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           L        +H    + GF+    V  GLID Y KC  L  A ++F E      DI+  +
Sbjct: 417 LEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEE--CSSGDIIAVT 474

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            +I       HGE A+ LF EM++ G++P+    +S L+AC+     ++G  +   +++ 
Sbjct: 475 SMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR 534

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
            Q  S A     +V    + G +++A     ++P +     W A++G    HG+   G+ 
Sbjct: 535 -QFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV-VSWSAMIGGLAQHGH---GKR 589

Query: 607 AAKWLFELEPE--NPGNYVLLSKL 628
           A +    +  E  NP +  + S L
Sbjct: 590 ALELFGRMVDEGINPNHITMTSVL 613


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/648 (33%), Positives = 347/648 (53%), Gaps = 78/648 (12%)

Query: 19  LVQQYAATKSIAGTKQLHAFIIT-SGPLFTHLRSSLVRAY---GHVSNVRILFDEMSERS 74
           ++Q  A  KS    K++H+ I + S  +   L   LV  Y   G +   R +FD M +++
Sbjct: 105 VLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKN 164

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
            +L+N ++  YA+ G   +S+ +F  M+  G                           + 
Sbjct: 165 VYLWNFMVSEYAKIGDFKESICLFKIMVEKG---------------------------IE 197

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           G+   + F++                        FD + +  V+SWN++ISGY  N   +
Sbjct: 198 GKRPESAFEL------------------------FDKLCDRDVISWNSMISGYVSNGLTE 233

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
             L ++  M+  G++ D A+++SVL  C     + +G+ +H L       + I   N L+
Sbjct: 234 RGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLL 293

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           DMY KCG ++ A  VF++M ER+VV+WTSMI GY  +G    A+ L Q M+ EGV+ + +
Sbjct: 294 DMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVV 353

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
            I S+L AC+    L  G+ +H +    N+E  + V  AL+DMYAKC  ++ +  VF+  
Sbjct: 354 AITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTM 413

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
             K  + WN ++                       ++P+  T+  +LPA A L+ L++  
Sbjct: 414 VVKDIISWNTMIGE---------------------LKPDSRTMACVLPACASLSALERGK 452

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            IH Y++R G+ S   V+  L+D+Y KCG L  A  +F  IP   KD+V W+V+IAGYGM
Sbjct: 453 EIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP--SKDLVSWTVMIAGYGM 510

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           HG+G  A++ F EM  +G++P+EV+F S L+ACSH GLL++G   F  M  +     + +
Sbjct: 511 HGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLE 570

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HY C+VDLL R G L +AY+ I T+P+ P   +WGALL  C  + ++EL E  A+ +FEL
Sbjct: 571 HYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFEL 630

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           EPEN G YVLL+ +Y+   +W++ + +R+ + ++GLRK P  S IE++
Sbjct: 631 EPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIK 678


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/545 (36%), Positives = 326/545 (59%), Gaps = 2/545 (0%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           +++ C  L   + G  +H  +L +G   + ++ N L++MY   G +  AR+VFD + + +
Sbjct: 102 LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRN 161

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           +VSW  +I  +       EA   ++ M  +G +PD  + VS+L A    + +++G+ +H 
Sbjct: 162 IVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHM 221

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            +A   L        +LV MY KCG +++A+++FD++ E++VVTWT +I GYA  G V  
Sbjct: 222 EIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDV 281

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           AL L + MQ   V PN +T  S+L  C++   L+ G+ +H + I+     E+ V  ALI 
Sbjct: 282 ALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALIT 341

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY KC  +K + ++F     +  V W A++ G    G   +A++LFR+M  + ++P+  T
Sbjct: 342 MYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMT 401

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
             S L + +  A LQ+  +IH  L+  G+   V + + L+ +Y+KCGS++ A  +F+++ 
Sbjct: 402 FTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQM- 460

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
             ++++V W+ +I G   HG    A+  F++M + G++P++VTFTS L AC+H GL++EG
Sbjct: 461 -SERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEG 519

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
              F  M  ++      +HY+C VDLLGRAG L+EA ++I TMP +P  +VWGALL AC 
Sbjct: 520 RKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACR 579

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           IH +VE GE AA+ + +L+P++ G YV LS +Y+A  R++DAE VR VM+++ + K P  
Sbjct: 580 IHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQ 639

Query: 657 SLIEV 661
           S IEV
Sbjct: 640 SWIEV 644



 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 141/486 (29%), Positives = 261/486 (53%), Gaps = 7/486 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERS 74
           L+Q+ A  +S+   +++HA I+ SG     +L ++L+  Y   G +++ R +FD + +R+
Sbjct: 102 LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRN 161

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
              +  +++ +     + ++ K +  M +L    PD  T+  ++ A T+    ++G  +H
Sbjct: 162 IVSWTAMIEAFVAGNQNLEAYKCYETM-KLAGCKPDKVTFVSLLNAFTNPELLQVGQKVH 220

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
             +   G +++  VG  L+ MY   G++  A+ +FD + E +VV+W  LI+GY +     
Sbjct: 221 MEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVD 280

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
            AL + + M ++ V P+  +  S+L  C     +E G+ +H  +     G+ I   NAL+
Sbjct: 281 VALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALI 340

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
            MY KCG + EAR +F  +  RDVVTWT+M+ GYA  G    A+ LF+ MQ +G++P+ +
Sbjct: 341 TMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKM 400

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T  S L++CSS  +L+ G+S+H   +      +V +++AL+ MYAKC  +  +  VF + 
Sbjct: 401 TFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQM 460

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
           S++  V W A++ GC  +G  R+A+E F QM  + ++P+  T  S+L A   +  +++  
Sbjct: 461 SERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGR 520

Query: 435 -NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
            +     + YG   +VE  +  +D+  + G LE A  +   +P +     VW  +++   
Sbjct: 521 KHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGP-SVWGALLSACR 579

Query: 494 MHGHGE 499
           +H   E
Sbjct: 580 IHSDVE 585



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/418 (31%), Positives = 210/418 (50%), Gaps = 16/418 (3%)

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           K    KEAL + + M+  G          +L  C  L+ +E GR +H  +    +  N  
Sbjct: 73  KQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 132

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             N L+ MY KCGS+ +AR VFD + +R++V+WT+MI  +        A   ++ M+  G
Sbjct: 133 LENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAG 192

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
            +P+ +T  SLL+A ++   L+ G+ +H    K  LE E  V T+L+ MYAKC  +  + 
Sbjct: 193 CKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQ 252

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
            +F +  +K  V W  ++AG    G    A+EL  +M    V PN  T  S+L       
Sbjct: 253 VIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPL 312

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            L+    +H Y+I+ G+   + V   LI +Y KCG L+ A K+F ++P   +D+V W+ +
Sbjct: 313 ALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLP--HRDVVTWTAM 370

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           + GY   G  + A+ LF+ M Q G++P+++TFTSAL +CS    L EG  +       HQ
Sbjct: 371 VTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSI-------HQ 423

Query: 549 TCSRADH------YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
               A +       + +V +  + G +D+A  +   M  +   A W A++  C  HG 
Sbjct: 424 QLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVA-WTAMITGCAQHGR 480


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/635 (34%), Positives = 344/635 (54%), Gaps = 8/635 (1%)

Query: 34  QLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEM-SERSSFLYNTVMKMYAQN 88
           Q+HA  + +G        +   ++   +G + + R +FDE  SER++  +N +M  Y +N
Sbjct: 28  QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKN 87

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
               D++++F  M+  G   P  + +  V+ ACT       G  +H  V+  G++ D F 
Sbjct: 88  DQCGDAIQVFGEMVWSG-IQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFT 146

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+ MY+  G V  A  +F+ M +  VVSWN LISG   N +   A+ +   M  SG+
Sbjct: 147 ANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGL 206

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P+   + S+L AC      ++GR IH  +       +      LVDMY K   +++A  
Sbjct: 207 VPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMK 266

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VFD MS RD++ W ++I+G +  G    A  +F  ++ EG+  N  T+ ++L + +SL  
Sbjct: 267 VFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEA 326

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
               R +HA   K     +  V   LID Y KC+ +  + +VF   S    +   +++  
Sbjct: 327 ASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITA 386

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
                    A++LF +ML + +EP+   L+SLL A A L+  +Q   +H +LI+  F+S 
Sbjct: 387 LSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSD 446

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
                 L+  Y+KCGS+E A   FS +P  ++ +V WS +I G   HGHG+ A+ LF  M
Sbjct: 447 AFAGNALVYTYAKCGSIEDAELAFSSLP--ERGVVSWSAMIGGLAQHGHGKRALELFGRM 504

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
           V  G+ PN +T TS L AC+H GL+DE    FN M E        +HY+C++DLLGRAG+
Sbjct: 505 VDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGK 564

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           LD+A +L+ +MP +   +VWGALLGA  +H + ELG++AA+ LF LEPE  G +VLL+  
Sbjct: 565 LDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANT 624

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           Y++   W +   VR +M +  ++K PA S +EV++
Sbjct: 625 YASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKD 659



 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 168/522 (32%), Positives = 269/522 (51%), Gaps = 13/522 (2%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           + +  P+V+K   D    +LG  +H   + TGF  D FV N L+AMY  FG +  AR+VF
Sbjct: 9   NEFALPVVLKCVPDA---QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVF 65

Query: 170 D-AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           D A  E + VSWN L+S Y KN    +A+ VF  M+ SG++P       V+ AC   + I
Sbjct: 66  DEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNI 125

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
           + GR +H +V      K++   NALVDMYVK G V+ A ++F++M + DVV+W ++I+G 
Sbjct: 126 DAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGC 185

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
            LNG    A+ L   M+  G+ PN   + S+L AC+       GR +H + IK N + + 
Sbjct: 186 VLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDD 245

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            +   L+DMYAK + +  + +VF   S +  + WNA+++GC H G   +A  +F  +  E
Sbjct: 246 YIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKE 305

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            +  N  TL ++L + A L        +H    + GF+    V  GLID Y KC  L  A
Sbjct: 306 GLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDA 365

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            ++F E      DI+  + +I       HGE A+ LF EM++ G++P+    +S L+AC+
Sbjct: 366 IRVFEE--CSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACA 423

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
                ++G  +   +++  Q  S A     +V    + G +++A     ++P +     W
Sbjct: 424 SLSAYEQGKQVHAHLIKR-QFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV-VSW 481

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPE--NPGNYVLLSKL 628
            A++G    HG+   G+ A +    +  E  NP +  + S L
Sbjct: 482 SAMIGGLAQHGH---GKRALELFGRMVDEGINPNHITMTSVL 520


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/644 (34%), Positives = 358/644 (55%), Gaps = 12/644 (1%)

Query: 30  AGTKQLHAFIITSGPLFTHL--RSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKM 84
           A   +LHA  +  G L   +   ++LV  Y   G  ++ R +FDEM  R    +N+++  
Sbjct: 135 AKGAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSA 194

Query: 85  YAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI-VIKACTDLAWRKLGIALHGRVLITGFD 143
              NG   D+ +  +GM+R G   P N    + ++ AC        G+ +HG VL  G +
Sbjct: 195 LLTNGMLEDAKRAVVGMMRSGV--PVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLN 252

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
               +GN L+ MY  FG+++++  VF+ M E + VSWN+ I  +    + ++ L +F  M
Sbjct: 253 SVVNLGNALVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLM 312

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
            +  V P   ++ S+LPA   L    +G+ +H       +  +I   N L+DMY K G  
Sbjct: 313 SEHDVTPGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCS 372

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
            +A  +F+ +  R+VV+W +MI     NG    A  L   MQ  G  PNS T+ +LL AC
Sbjct: 373 EKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPAC 432

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
           S +  +K G+ +HAW+I+++L  ++ V  ALID+YAKC  + L+  +F R S+K  V +N
Sbjct: 433 SRVASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDR-SEKDGVSYN 491

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
            ++ G   +    +++ LF+QM +  +E +  +    L A + L+  +Q   IH  L++ 
Sbjct: 492 TLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKR 551

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
              S   ++  L+D+Y+K G L++A KIF+ I    KD+  W+ +I GYGMHG  + A  
Sbjct: 552 LLDSHPFLANSLLDVYTKGGMLDTASKIFNRI--TQKDVASWNTMILGYGMHGQIDVAFE 609

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563
           LF  M   G++ + V++ + L  CSHGGL+D G   F+ M+  +    +  HY C+VDLL
Sbjct: 610 LFDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMIAQNIKPQQM-HYACMVDLL 668

Query: 564 GRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623
           GRAG+L E+ ++IR MP +    VWGALLG+C IHG++EL  +AA+ LFEL+PEN G Y 
Sbjct: 669 GRAGQLSESAEIIRNMPFRANSDVWGALLGSCRIHGDIELARLAAEHLFELKPENSGYYT 728

Query: 624 LLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           LL  +YS    W +A  V+ +M  + ++K PA+S ++  N L A
Sbjct: 729 LLRNMYSESGMWNEANGVKKLMKSRKVQKNPAYSWVQSGNKLQA 772



 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 178/558 (31%), Positives = 286/558 (51%), Gaps = 22/558 (3%)

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK---L 129
           RS+FL+N++ +  A      ++L+++  M+R G   PD+ T+P  + A   +A  +    
Sbjct: 78  RSAFLWNSLSRALASAALPCEALRVYNRMVRSG-VRPDDRTFPFALHAAAAVAQAEHPAK 136

Query: 130 GIALHGRVLITGFDM-DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
           G  LH   L  G  + D F GN L+  Y   G    AR+VFD M    VVSWN+L+S   
Sbjct: 137 GAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALL 196

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
            N   ++A      M++SGV  + AS+VS+LPACG  ++   G  +H LV    L   + 
Sbjct: 197 TNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVN 256

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             NALVDMY K G +  +  VF+ M E++ V+W S I  +A  G   + L +F+LM    
Sbjct: 257 LGNALVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHD 316

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           V P S+T+ SLL A   L Y   G+ LH ++I++ +E ++ +   L+DMYAK    + + 
Sbjct: 317 VTPGSVTLSSLLPALVDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKAS 376

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
            +F     +  V WNA++A    NG   +A  L  +M      PN  TL +LLPA + +A
Sbjct: 377 AIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVA 436

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            ++    IH + IR   +S + VS  LID+Y+KCG L  A  IF      +KD V ++ +
Sbjct: 437 SVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDR---SEKDGVSYNTL 493

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD----LFNFML 544
           I GY        ++ LF++M  +G++ + V+F   L ACS+     +G +    L   +L
Sbjct: 494 IVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQGKEIHGVLVKRLL 553

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
           ++H   + +     ++D+  + G LD A  +   +  K   A W  ++    +HG +++ 
Sbjct: 554 DSHPFLANS-----LLDVYTKGGMLDTASKIFNRITQKDV-ASWNTMILGYGMHGQIDV- 606

Query: 605 EVAAKWLFELEPENPGNY 622
              A  LF+L  ++   Y
Sbjct: 607 ---AFELFDLMKDDGIEY 621


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/547 (36%), Positives = 312/547 (57%), Gaps = 4/547 (0%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           +++ C+       G+ +H   +  GF  D  + N LI MY     V  A  VFD M E +
Sbjct: 10  LLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERN 69

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           VVSW  L+ GY +   AK +L +   M  SGV+P+  +  + L ACG L  +E G  IH 
Sbjct: 70  VVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHG 129

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
           +             NA +DMY KCG +  A  VF++M  R++V+W +MI G+   G+ R 
Sbjct: 130 MCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRK 189

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV--IVETAL 354
           +L LFQ MQ +G  P+  T  S L AC +L  ++ G  +HA  I +     +  I+ +A+
Sbjct: 190 SLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAI 249

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           +D+YAKC  +  + +VF R  +K  + W+A++ G    G   +A++LFRQ+   V   + 
Sbjct: 250 VDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDG 309

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
             L+ ++  +A LA ++Q   +HCY+++      + V+  +ID+Y KCG  E A ++FSE
Sbjct: 310 FVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSE 369

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
           + +++  +V W+V+I GYG HG GE A+ LF  M   G++ +EV + + L ACSH GL+ 
Sbjct: 370 MQVRN--VVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIR 427

Query: 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           E  + F+ +  NHQ     +HY C+VD+LGRAG+L EA +LI  M LKP   +W  LL A
Sbjct: 428 ESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSA 487

Query: 595 CVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP 654
           C +HGN+E+G    + LF ++ +NP NYV++S +Y+    WK+ E VR ++  KGL+K  
Sbjct: 488 CRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEA 547

Query: 655 AHSLIEV 661
             S +E+
Sbjct: 548 GQSWVEI 554



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 133/476 (27%), Positives = 249/476 (52%), Gaps = 15/476 (3%)

Query: 34  QLHAFIITSGPLFTH-LRSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNG 89
           Q+HA  +  G  F   + + L+  YG  S V +   +FD M ER+   +  +M  Y Q G
Sbjct: 25  QVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEG 84

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
            +  SL +   M   G   P+ +T+   +KAC  L   + G+ +HG  + +GF+  + VG
Sbjct: 85  NAKGSLALLCEMGYSG-VKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVG 143

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N  I MY   G +  A +VF+ M   ++VSWN +I+G+      +++LV+F  M   G  
Sbjct: 144 NATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEV 203

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHE--LVAGGRLG-KNIAAWNALVDMYVKCGSVNEA 266
           PD  +  S L ACG L  I  G  IH   +  G  +  +NI A +A+VD+Y KCG + EA
Sbjct: 204 PDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIA-SAIVDLYAKCGYLFEA 262

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
           + VFDR+ ++++++W+++I G+A  G++  A+ LF+ ++      +   +  ++   + L
Sbjct: 263 QKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADL 322

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             +++G+ +H + +K     ++ V  ++IDMY KC L + + ++F+    +  V W  ++
Sbjct: 323 ALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMI 382

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA---ILADLQQAMNIHCYLIRY 443
            G   +GL  KA+ LF +M ++ +E ++    +LL A +   ++ + Q+  +  C    +
Sbjct: 383 TGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCN--NH 440

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
                +E    ++DI  + G L+ A  +   + +K  +  +W  +++   +HG+ E
Sbjct: 441 QMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNE-GIWQTLLSACRVHGNLE 495



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 203/397 (51%), Gaps = 13/397 (3%)

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           +  +L  C      + G  +H        G ++   N L+DMY KC  V+ A  VFDRM 
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
           ER+VV+WT+++ GY   G+ + +L L   M + GV+PN  T  + L AC +L  ++ G  
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126

Query: 335 LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
           +H   +K   E   +V  A IDMY+KC  + ++ QVF +   +  V WNA++AG  H G 
Sbjct: 127 IHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGN 186

Query: 395 ARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE--VS 452
            RK++ LF++M  +   P++ T  S L A   L  ++    IH  LI  GF   +   ++
Sbjct: 187 GRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIA 246

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
           + ++D+Y+KCG L  A K+F    I+ K+++ WS +I G+   G+   A+ LF+++ +S 
Sbjct: 247 SAIVDLYAKCGYLFEAQKVFDR--IEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESV 304

Query: 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE--NHQTCSRADHYTCIVDLLGRAGRLD 570
              +    +  +   +   L+++G  +  ++L+  +    S A+    I+D+  + G  +
Sbjct: 305 SNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANS---IIDMYLKCGLTE 361

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVA 607
           EA  L   M ++     W  ++     HG   LGE A
Sbjct: 362 EAERLFSEMQVRNV-VSWTVMITGYGKHG---LGEKA 394



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 143/279 (51%), Gaps = 9/279 (3%)

Query: 24  AATKSIAGTKQLHAFIITSG-PLFTH--LRSSLVRAY---GHVSNVRILFDEMSERSSFL 77
            A  +I G  Q+HA +IT G P+     + S++V  Y   G++   + +FD + +++   
Sbjct: 217 GALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLIS 276

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           ++ +++ +AQ G   +++ +F   LR    N D +   I++    DLA  + G  +H  +
Sbjct: 277 WSALIQGFAQEGNLLEAMDLFR-QLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYI 335

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           L     +D  V N +I MY+  G  + A ++F  M   +VVSW  +I+GY K+   ++A+
Sbjct: 336 LKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAI 395

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEI-EMGRMIHELVAGGRLGKNIAAWNALVDM 256
            +F+ M   G+E D  + +++L AC +   I E       L    ++  NI  +  +VD+
Sbjct: 396 HLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDI 455

Query: 257 YVKCGSVNEARLVFDRMSER-DVVTWTSMINGYALNGDV 294
             + G + EA+ + + M  + +   W ++++   ++G++
Sbjct: 456 LGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNL 494


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/614 (34%), Positives = 338/614 (55%), Gaps = 12/614 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V++   +F  +   +S  +  ++  +A+NG   ++L  +  M+  G   PD   + + 
Sbjct: 6   GSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEG-LRPDGAMFVVA 64

Query: 118 IKACTDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           I  C+     K G  LH  +L T   + D  +G  LI MY    +++ ARK FD M + +
Sbjct: 65  IGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKT 124

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLK---SGVEPDCASVVSVLPACGYLKEIEMGRM 233
           +V+WN LI+GY +N   + AL ++  M+     G++PD  +  S L AC  + +I  GR 
Sbjct: 125 LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGRE 184

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           I           +    NAL++MY KCGS+  AR VFDR+  RDV+ W +MI+GYA  G 
Sbjct: 185 IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGA 244

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              AL LFQ M     +PN +T   LL+AC++L  L++GR++H    +   E ++++   
Sbjct: 245 ATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNV 304

Query: 354 LIDMYAKCNL-VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           L++MY KC+  ++ + QVF R   +  + WN ++   V  G A+ A+++F+QM +E V P
Sbjct: 305 LLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAP 364

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           N+ TL+++L A A+L   +Q   +H  +      + V +   L+++Y++CGSL+    +F
Sbjct: 365 NEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVF 424

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
           +   I+DK +V WS +IA Y  HGH  T +  F E++Q G+  ++VT  S L ACSHGG+
Sbjct: 425 A--AIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGM 482

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           L EG+  F  M+ +H       H+ C+VDLL RAGRL+ A +LI  MP  P    W +LL
Sbjct: 483 LKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLL 542

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYV-LLSKLYSAVRRWKDAENVRDVMDEKGLR 651
             C +H + +     A  LFELE E+  + V LLS +Y+   RW D   VR   + +  R
Sbjct: 543 SGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDD---VRKTRNRRAAR 599

Query: 652 KAPAHSLIEVRNIL 665
           K P  S IE+ + +
Sbjct: 600 KNPGCSYIEINDTV 613



 Score =  244 bits (624), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 141/457 (30%), Positives = 246/457 (53%), Gaps = 13/457 (2%)

Query: 155 MYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
           MY   G V  A  VF A+   + VSW  +++ + +N + +EAL  +  M+  G+ PD A 
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGK-NIAAWNALVDMYVKCGSVNEARLVFDRM 273
            V  +  C   K+++ G+++H ++   +L + +I    AL+ MY +C  +  AR  FD M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLM---QFEGVRPNSLTIGSLLSACSSLYYLK 330
            ++ +VTW ++I GY+ NGD R AL ++Q M     EG++P+++T  S L ACS +  + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
           +GR + A T+      + IV+ ALI+MY+KC  ++ + +VF R   +  + WN +++G  
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
             G A +A+ELF++M     +PN  T   LL A   L DL+Q   IH  +  +G+ S + 
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLV 300

Query: 451 VSTGLIDIYSKC-GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
           +   L+++Y+KC  SLE A ++F    ++ +D++ W+++I  Y  +G  + A+ +FK+M 
Sbjct: 301 IGNVLLNMYTKCSSSLEEARQVFER--LRTRDVITWNILIVAYVQYGQAKDALDIFKQMQ 358

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAG 567
              V PNE+T ++ L AC+  G   +G  +   +        +AD      ++++  R G
Sbjct: 359 LENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGR---CKADVVLENSLMNMYNRCG 415

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
            LD+   +   +  K     W  L+ A   HG+   G
Sbjct: 416 SLDDTVGVFAAIRDKSL-VSWSTLIAAYAQHGHSRTG 451


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/614 (34%), Positives = 338/614 (55%), Gaps = 12/614 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V++   +F  +   +S  +  ++  +A+NG   ++L  +  M+  G   PD   + + 
Sbjct: 6   GSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEG-LRPDGAMFVVA 64

Query: 118 IKACTDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           I  C+     K G  LH  +L T   + D  +G  LI MY    +++ ARK FD M + +
Sbjct: 65  IGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKT 124

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLK---SGVEPDCASVVSVLPACGYLKEIEMGRM 233
           +V+WN LI+GY +N   + AL ++  M+     G++PD  +  S L AC  + +I  GR 
Sbjct: 125 LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGRE 184

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           I           +    NAL++MY KCGS+  AR VFDR+  RDV+ W +MI+GYA  G 
Sbjct: 185 IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGA 244

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              AL LFQ M     +PN +T   LL+AC++L  L++GR++H    +   E ++++   
Sbjct: 245 ATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNV 304

Query: 354 LIDMYAKCNL-VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           L++MY KC+  ++ + QVF R   +  + WN ++   V  G A+ A+++F+QM +E V P
Sbjct: 305 LLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAP 364

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           N+ TL+++L A A+L   +Q   +H  +      + V +   L+++Y++CGSL+    +F
Sbjct: 365 NEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVF 424

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
           +   I+DK +V WS +IA Y  HGH  T +  F E++Q G+  ++VT  S L ACSHGG+
Sbjct: 425 A--AIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGM 482

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           L EG+  F  M+ +H       H+ C+VDLL RAGRL+ A +LI  MP  P    W +LL
Sbjct: 483 LKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLL 542

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYV-LLSKLYSAVRRWKDAENVRDVMDEKGLR 651
             C +H + +     A  LFELE E+  + V LLS +Y+   RW D   VR   + +  R
Sbjct: 543 SGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDD---VRKTRNRRAAR 599

Query: 652 KAPAHSLIEVRNIL 665
           K P  S IE+ + +
Sbjct: 600 KNPGCSYIEINDTV 613



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 141/457 (30%), Positives = 246/457 (53%), Gaps = 13/457 (2%)

Query: 155 MYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
           MY   G V  A  VF A+   + VSW  +++ + +N + +EAL  +  M+  G+ PD A 
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGK-NIAAWNALVDMYVKCGSVNEARLVFDRM 273
            V  +  C   K+++ G+++H ++   RL + +I    AL+ MY +C  +  AR  FD M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLM---QFEGVRPNSLTIGSLLSACSSLYYLK 330
            ++ +VTW ++I GY+ NGD R AL ++Q M     EG++P+++T  S L AC+ +  + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
           +GR + A T+      + IV+ ALI+MY+KC  ++ + +VF R   +  + WN +++G  
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
             G A +A+ELF++M     +PN  T   LL A   L DL+Q   IH  +   G+ S + 
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLV 300

Query: 451 VSTGLIDIYSKC-GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
           +   L+++Y+KC  SLE A ++F    ++ +D++ W+++I  Y  +G  + A+ +FK+M 
Sbjct: 301 IGNVLLNMYTKCSSSLEEARQVFER--MRTRDVITWNILIVAYVQYGQAKDALDIFKQMQ 358

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAG 567
              V PNE+T ++ L AC+  G   +G  +   +        +AD      ++++  R G
Sbjct: 359 LENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGR---CKADVVLENSLMNMYNRCG 415

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
            LD+   +   +  K +   W  L+ A   HG+   G
Sbjct: 416 SLDDTVGVFAAIRDK-SLVSWSTLIAAYAQHGHSRTG 451


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/649 (33%), Positives = 346/649 (53%), Gaps = 80/649 (12%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITS-----GPLFTHLRSSLVRAYGHVSNVRILFDEMSER 73
           ++Q  A  KS    K++H+ I ++     G L   L  S     G +   R +FD M ++
Sbjct: 105 VLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKL-VSFYATCGDLKEGRRVFDTMEKK 163

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           + +L+N ++  YA+ G   +S+ +F  M+  G                           +
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMVEKG---------------------------I 196

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
            G+   + F++                        FD + +  V+SWN++ISGY  N   
Sbjct: 197 EGKRPESAFEL------------------------FDKLCDRDVISWNSMISGYVSNGLT 232

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
           +  L ++  M+  G++ D A+++SVL  C     + +G+ +H L       + I   N L
Sbjct: 233 ERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTL 292

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           +DMY KCG ++ A  VF++M ER+VV+WTSMI GY  +G    A+ L Q M+ EGV+ + 
Sbjct: 293 LDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDV 352

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
           + I S+L AC+    L  G+ +H +    N+E  + V  AL+DMYAKC  ++ +  VF+ 
Sbjct: 353 VAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFST 412

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
              K  + WN ++                       ++P+  T+  +LPA A L+ L++ 
Sbjct: 413 MVVKDIISWNTMIGE---------------------LKPDSRTMACVLPACASLSALERG 451

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             IH Y++R G+ S   V+  L+D+Y KCG L  A  +F  IP   KD+V W+V+IAGYG
Sbjct: 452 KEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP--SKDLVSWTVMIAGYG 509

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
           MHG+G  A++ F EM  +G++P+EV+F S L+ACSH GLL++G   F  M  +     + 
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
           +HY C+VDLL R G L +AY+ + T+P+ P   +WGALL  C  + ++EL E  A+ +FE
Sbjct: 570 EHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFE 629

Query: 614 LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           LEPEN G YVLL+ +Y+   +W++ + +R+ + ++GLRK P  S IE++
Sbjct: 630 LEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIK 678


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/635 (32%), Positives = 344/635 (54%), Gaps = 13/635 (2%)

Query: 35  LHAFIITSG---PLFTHLRSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           LH  I+  G    LF  + S L+  Y     +   R LFD+M ER    +N+++  Y+Q 
Sbjct: 63  LHCLILKKGFSNQLF--VSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQR 120

Query: 89  GASHDSLKMFLGMLRLGEYNP---DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
           G + ++  +F  M+   E       ++T   V+KAC  L   ++G  +HG  +  GFD D
Sbjct: 121 GLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSD 180

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
            FV    + MY   G +  A   FD +    +V+WNT+I+GY +N Y +EA+ +F  M  
Sbjct: 181 LFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMEL 240

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
            G +P+  +   VL A   + +  +GR  H  V       ++    ALVDMY K   + +
Sbjct: 241 EGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIED 300

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
               F  MS+R++V++ ++I GY+L G    AL ++  +Q EG+ P+S T   L S+CS 
Sbjct: 301 VERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSV 360

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
              +  G  +H  ++K  L+ +V V  ++++ Y+KC     + + F   ++  +V W  I
Sbjct: 361 SSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGI 420

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           ++G   NG   KA+  F +M   + + ++ + +S++ A +  A ++Q  ++H ++++ G 
Sbjct: 421 ISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGL 480

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
              + V + +ID+YSKCG +E A K+FS +P  +K++V W+ +I GY  +G  + A+ LF
Sbjct: 481 DCTIYVGSAVIDMYSKCGMVEDAQKVFSVMP--EKNVVSWNSMITGYAQNGFCKEALLLF 538

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
           +EM  SG+ P  VTF   L ACSH GL++EG + +N M+ N+      +H TC+VDLLGR
Sbjct: 539 QEMTSSGILPTAVTFVGILFACSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGR 598

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           AG L+EA   + +        +WG+LL AC +H N ++G  AA+    LEP    +Y  L
Sbjct: 599 AGYLEEAEAFLLSSSFSKEPGIWGSLLSACGVHKNSDVGSRAAQHCLFLEPHYSSSYTAL 658

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           S +Y++   W +   +RD+M + G+ K P  S IE
Sbjct: 659 SNIYASKELWSEVSRIRDLMKDMGVEKEPGCSWIE 693



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 152/506 (30%), Positives = 255/506 (50%), Gaps = 18/506 (3%)

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
           A+ G    +L  FL MLR G   P+  TY   I AC       L  +LH  +L  GF   
Sbjct: 17  ARRGLVDQALSCFLQMLRAG-IEPNAITYSATISACAQSTRPSLATSLHCLILKKGFSNQ 75

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
            FV + LI+MY     +K AR +FD M E   VSWN++I+GY +    +EA  +F  M+ 
Sbjct: 76  LFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLNEEACGLFCSMIN 135

Query: 206 SGVEPDCA---------SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
           S     C          ++ +VL ACG L    +G+ +H          ++    + V M
Sbjct: 136 S-----CENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYM 190

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y KCG ++ A L FD++  +D+V W +MI GYA N     A+ LF  M+ EG +PN  T 
Sbjct: 191 YCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTF 250

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
             +L A +++     GR  HA  +K     +V V TAL+DMY+K   ++   + F   SK
Sbjct: 251 CCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSK 310

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           +  V +NA++ G    G   +A+ ++ Q+  E +EP+  T   L  + ++ + + +   +
Sbjct: 311 RNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQV 370

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H + +++G  S V V   +++ YSKCG  +SA + F    I   + V W+ II+G+  +G
Sbjct: 371 HVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFE--SINRPNSVCWAGIISGFAQNG 428

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
            GE A+  F +M +   + +E + +S + A S    +++G  L   ++++   C+     
Sbjct: 429 EGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVG- 487

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLK 582
           + ++D+  + G +++A  +   MP K
Sbjct: 488 SAVIDMYSKCGMVEDAQKVFSVMPEK 513



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 209/439 (47%), Gaps = 16/439 (3%)

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M E +VV W + I+   +     +AL  F  ML++G+EP+  +  + + AC       + 
Sbjct: 1   MLETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLA 60

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
             +H L+        +   + L+ MY K   + EAR +FD M ERD V+W SMI GY+  
Sbjct: 61  TSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQR 120

Query: 292 GDVRNALGLFQLM----QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           G    A GLF  M    +   +  +  T+ ++L AC  L   + G+ +H + +K   + +
Sbjct: 121 GLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSD 180

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           + V  + + MY KC ++ ++   F +   K  V WN ++ G   N    +A+ELF QM +
Sbjct: 181 LFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMEL 240

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           E  +PND T   +L A   ++D       H  +++ G    V V+T L+D+YSK   +E 
Sbjct: 241 EGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIED 300

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
             + F E  +  +++V ++ +I GY + G  E A+ ++ ++   G++P+  TF     +C
Sbjct: 301 VERAFGE--MSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSC 358

Query: 528 SHGGLLDEGLDL----FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           S    + EG  +      F L++  +   +     IV+   + G  D A +   ++  +P
Sbjct: 359 SVSSTVAEGAQVHVHSVKFGLDSDVSVGNS-----IVNFYSKCGFTDSALEAFESIN-RP 412

Query: 584 THAVWGALLGACVIHGNVE 602
               W  ++     +G  E
Sbjct: 413 NSVCWAGIISGFAQNGEGE 431


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/595 (35%), Positives = 340/595 (57%), Gaps = 7/595 (1%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI-VIKACTDLAWRK 128
           M ER    +N+++  +  NG  HD+ +  + M+R G   P N    + V+ AC      K
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGF--PLNVASLVSVVPACGTEQEEK 58

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
            G+++H   +  G +    + N L+ MY  FG+V+A+ +VFD M E + VSWN+ I  + 
Sbjct: 59  FGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFL 118

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
              +  + L +F  M +  V P   ++ S+LPA   L   ++GR +H       +  +I 
Sbjct: 119 NAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIF 178

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             N+LVDMY K GS+ +A  +F++M +R+VV+W +MI     NG    A  L   MQ  G
Sbjct: 179 VANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSG 238

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
             PNS+T+ ++L AC+ +  LK G+ +HAW+I++ L  ++ +  ALIDMY+KC  + L+ 
Sbjct: 239 ECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLAR 298

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
            +F R S+K  V +N ++ G   +    +++ LF+QM    ++ +  +    L A   L+
Sbjct: 299 NIFER-SEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLS 357

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
             +    IHC L+R        +S  L+D+Y+K G L +A KIF++I    KD+  W+ +
Sbjct: 358 VFKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKIT--KKDVASWNTM 415

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           I GYGMHG  + A  LF+ M   G+  + V++ + L ACSHGGL+D+G   F+ M+  + 
Sbjct: 416 ILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNI 475

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAA 608
              +  HY C+VDLLGRAG+L +  ++IR MP      VWGALLGAC IHGN+EL + AA
Sbjct: 476 EPQQM-HYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAA 534

Query: 609 KWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           + LFEL+PE+ G Y L+  +Y+   RW +A  +R +M  + ++K PA+S ++ ++
Sbjct: 535 EHLFELKPEHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQDQD 589



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 137/508 (26%), Positives = 238/508 (46%), Gaps = 81/508 (15%)

Query: 35  LHAFIITSG-PLFTHLRSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGA 90
           +HA  +  G     +L ++LV  YG   +V     +FD M E++   +N+ +  +   G 
Sbjct: 63  IHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGF 122

Query: 91  SHDSLKMFLGMLRLGEYN--PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
             D L+MF    ++ E+N  P + T   ++ A  +L    LG  +HG  +    D+D FV
Sbjct: 123 YGDVLRMF---RKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFV 179

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+ MY  FG ++ A  +F+ M + +VVSWN +I+   +N    EA  +   M KSG 
Sbjct: 180 ANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGE 239

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P+  ++V+VLPAC  +  ++MG+ IH       L  ++   NAL+DMY KCG ++ AR 
Sbjct: 240 CPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARN 299

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +F+R SE+D V++ ++I GY+ +     +L LF+ M+  G+  ++++    LSAC++L  
Sbjct: 300 IFER-SEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSV 358

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN----- 383
            K G+ +H   +++ L     +  +L+D+Y K  ++  + ++F + +KK    WN     
Sbjct: 359 FKHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILG 418

Query: 384 ------------------------------AILAGCVHNGLARKAVELFRQMLVEVVEPN 413
                                         A+LA C H GL  K  + F QM+ + +EP 
Sbjct: 419 YGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEP- 477

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
                             Q M+  C                ++D+  + G L    +I  
Sbjct: 478 ------------------QQMHYAC----------------MVDLLGRAGQLSKCAEIIR 503

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           ++P    +  VW  ++    +HG+ E A
Sbjct: 504 DMPFP-ANSDVWGALLGACRIHGNIELA 530



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 146/296 (49%), Gaps = 14/296 (4%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAY---GHVSNVRI 65
           P +  LV  ++   A   S+   KQ+HA+ I  G +F   + ++L+  Y   G +S  R 
Sbjct: 241 PNSITLV-NVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARN 299

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F E SE+    YNT++  Y+Q+    +SL +F  M  +G  + D  ++   + ACT+L+
Sbjct: 300 IF-ERSEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVG-IDYDAVSFMGALSACTNLS 357

Query: 126 WRKLGIALHG---RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT 182
             K G  +H    R L++G     F+ N L+ +Y   G +  A K+F+ + +  V SWNT
Sbjct: 358 VFKHGKEIHCVLVRRLLSG---HPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNT 414

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           +I GY  +     A  +F+ M   G++ D  S ++VL AC +   ++ G+     +    
Sbjct: 415 MILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQN 474

Query: 243 LGKNIAAWNALVDMYVKCGSVNE-ARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +      +  +VD+  + G +++ A ++ D     +   W +++    ++G++  A
Sbjct: 475 IEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELA 530


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/665 (33%), Positives = 364/665 (54%), Gaps = 23/665 (3%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAY---GHVSNVRILFDEMSERS 74
           L++   +T ++   K  HA I+ SG    H L ++L+  Y   G +S+ R +FD   ER 
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 75  SFLYNTVMKMYA-----QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA--WR 127
              +N ++  YA      +G + + L +F  +LR    +    T   V+K C +    W 
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFR-LLRASLGSTTRMTLAPVLKLCLNSGCLWA 201

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
             G+  HG  +  G + D FV   L+ +Y   G ++ AR +FD M E  VV WN ++ GY
Sbjct: 202 AEGV--HGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGY 259

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY--LKEIEMGRMIHELVAGGRLGK 245
            +    KEA  +F    +SG+ PD  SV  +L  C +    ++E+G+ +H +     L  
Sbjct: 260 VQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDS 319

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           +++  N+LV+MY K G    AR VF+ M   D+++W SMI+  A +     ++ LF  + 
Sbjct: 320 DVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLL 379

Query: 306 FEGVRPNSLTIGSLL-----SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
            EG++P+  T+ S+       AC  L  L +G+ +HA  IK   + ++ V + ++DMY K
Sbjct: 380 HEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIK 439

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           C  +  +  VF   S    V W ++++GCV NG   +A+ ++ +M    V P++ T  +L
Sbjct: 440 CGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATL 499

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           + A + +  L+Q   +H  +I+   +S   V T L+D+Y+KCG++E A+++F ++ +++ 
Sbjct: 500 IKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRN- 558

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
            I +W+ ++ G   HG+ E AV+LFK M   G++P+ V+F   L ACSH GL  E  +  
Sbjct: 559 -IALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYL 617

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           + M  ++      +HY+C+VD LGRAG + EA  +I TMP K + ++  ALLGAC I G+
Sbjct: 618 HSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGD 677

Query: 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           VE G+  A  LF LEP +   YVLLS +Y+A  RW D  + R +M  K ++K P  S I+
Sbjct: 678 VETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWID 737

Query: 661 VRNIL 665
           V+N+L
Sbjct: 738 VKNML 742


>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/618 (34%), Positives = 341/618 (55%), Gaps = 8/618 (1%)

Query: 48  HLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL 104
           ++ S+LV  Y   S +   + +F+ + ER+  L+N ++  +AQNG + + ++ F  M R 
Sbjct: 345 YVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRH 404

Query: 105 GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA 164
           G   PD +T+  +  AC  L +   G  LH  ++   F  + FV N L+ MY   G +K 
Sbjct: 405 GP-QPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKE 463

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
           ARK F+ M  H  VSWN +I GY +  Y  EA  +F  M+ +GV PD  S+ S++ AC  
Sbjct: 464 ARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACAN 523

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           +KE + G+  H L+    L  +  A ++L+DMYVKCG V  AR VF  M  R+VV+  ++
Sbjct: 524 VKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINAL 583

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN- 343
           I GY ++  +  A+ LFQ +Q  G++P  +T   LL  C   + L  GR +H   +K   
Sbjct: 584 IAGYTMS-HLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGF 642

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELF 402
           L    +V  +L+ MY        S  +F+     K  V W A+++G        KA++ +
Sbjct: 643 LSSSEMVCVSLLCMYMNSQRFADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFY 702

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
           + M  + + P+ AT  S+L A A ++ LQ    +H  +   GF       + LID+Y+KC
Sbjct: 703 QHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKC 762

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G ++ + ++F E+P ++  ++ W+ +I G   +G+ E A+ +FK+M Q  + P+EVTF  
Sbjct: 763 GDVKGSLQVFHEMPRRN-SVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLG 821

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
            L ACSH G + EG  +F+ M+ N++   R DH  C+VD+LGR G L+EA + I  +  K
Sbjct: 822 VLSACSHAGRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCK 881

Query: 583 PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642
               +W  LLGAC  HG+   G+ AA  L EL+P++  +YVLLS LY+    W  A+++R
Sbjct: 882 ADPMLWSTLLGACRKHGDEVRGKRAANKLMELKPQSSSSYVLLSGLYAESENWSGADSLR 941

Query: 643 DVMDEKGLRKAPAHSLIE 660
             M  KG++K P +S IE
Sbjct: 942 REMKLKGVKKLPGYSWIE 959



 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 156/508 (30%), Positives = 254/508 (50%), Gaps = 43/508 (8%)

Query: 33  KQLHAFIITSGPLF-THLRSSLVRAYGHVSNVR---ILFDEMSERSSFLYNTVMKMYAQN 88
           KQ+H  +   G  F +  +  L+  Y    N+R   ++FD      +  + T++  Y ++
Sbjct: 162 KQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRD 221

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   +++K+F  M R+G   PD      VI A                            
Sbjct: 222 GFPMEAVKVFDKMQRVGHV-PDQIALVTVINA---------------------------- 252

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
                  Y+  G +  ARK+F  +   +VV+WN +ISG+ K  +A+EA+  F  + K+G+
Sbjct: 253 -------YVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGL 305

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +   +S+ SVL A   L  +  G M+H       L  N+   +ALV+MY KC  ++ A+ 
Sbjct: 306 KATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQ 365

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VF+ + ER++V W +M+ G+A NG  +  +  F  M+  G +P+  T  S+ SAC+SL+Y
Sbjct: 366 VFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHY 425

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L  G  LH   IK      + V  AL+DMYAK   +K + + F        V WNAI+ G
Sbjct: 426 LDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVG 485

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            V      +A  +FR+M+   V P++ +L S++ A A + + +Q    HC L++ G  + 
Sbjct: 486 YVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTS 545

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
               + LID+Y KCG + +A  +F  +P   +++V  + +IAGY M  H E A+ LF+E+
Sbjct: 546 TCAGSSLIDMYVKCGVVLAARDVFYSMPY--RNVVSINALIAGYTM-SHLEEAIHLFQEI 602

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEG 536
              G++P EVTF   L  C    +L+ G
Sbjct: 603 QMVGLKPTEVTFAGLLDGCDGAFMLNLG 630



 Score =  252 bits (643), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 170/584 (29%), Positives = 285/584 (48%), Gaps = 46/584 (7%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFL 77
           K V Q  +T  +  +K L   +   G L  ++   L    G+V   +  F  + ++  F 
Sbjct: 51  KAVLQALSTAKVIHSKSLKIGVGLKG-LLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFA 109

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N+V+ MY  +G     ++ F+ M   G   P+ +T+ +V+ AC+ L     G  +H  V
Sbjct: 110 WNSVLSMYLDHGLFATVVQSFVCMWNHG-VRPNEFTFAMVLSACSGLQDINYGKQVHCGV 168

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
              GF   +F    LI MY     ++ AR VFD       VSW TLI+GY ++ +  EA+
Sbjct: 169 FKMGFGFRSFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAV 228

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
            VFD M + G  PD  ++V+V+ A                                   Y
Sbjct: 229 KVFDKMQRVGHVPDQIALVTVINA-----------------------------------Y 253

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
           V  G + +AR +F ++   +VV W  MI+G+A  G    A+  F  ++  G++    ++G
Sbjct: 254 VALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLG 313

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           S+LSA +SL  L  G  +HA  IK+ L+  V V +AL++MYAKC+ +  + QVF    ++
Sbjct: 314 SVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGER 373

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V WNA+L G   NGLA++ +E F  M     +P++ T  S+  A A L  L     +H
Sbjct: 374 NIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLH 433

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
             +I+  F S + V+  L+D+Y+K G+L+ A K F  + I D   V W+ II GY    +
Sbjct: 434 TVMIKNKFTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDN--VSWNAIIVGYVQEEY 491

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE---NHQTCSRAD 554
            + A  +F+ MV +GV P+EV+  S + AC++     +G      +++   +  TC+ + 
Sbjct: 492 NDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSS 551

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
               ++D+  + G +  A D+  +MP +   ++   + G  + H
Sbjct: 552 ----LIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYTMSH 591


>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 769

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 224/653 (34%), Positives = 356/653 (54%), Gaps = 9/653 (1%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAYGH---VSNVRILFDEMSE 72
           I L+   ++++S+A  +++H  I+ S   + T L + ++  YG    + + R +FD M E
Sbjct: 68  ISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPE 127

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           R+   Y +V+  Y+QNG   +++ ++L ML+  +  PD + +  +IKAC       LG  
Sbjct: 128 RNLVSYTSVITGYSQNGQEAEAITLYLKMLQ-ADLVPDQFAFGSIIKACACAGDVVLGKQ 186

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           LH +V+           N LIAMY+ F ++  A KVF  +    ++SW+++I+G+ +  +
Sbjct: 187 LHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGF 246

Query: 193 AKEALVVFDWMLKSGV-EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
             EAL     ML  GV  P+     S L AC  L   + G  IH L     L  N  A  
Sbjct: 247 EFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKLELTGNAIAGC 306

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           +L DMY +CG ++ AR VF+++   D  +W  +I G A NG    A+ +F  M+  G  P
Sbjct: 307 SLCDMYARCGFLDSARRVFNQIERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIP 366

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +++++ SLL A +    L +G  +H++ IK     ++ V  +L+ MY  C+ +   F +F
Sbjct: 367 DAISLRSLLCAQTKPMALCQGMQIHSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNLF 426

Query: 372 AR-TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
               +K  +V WNAIL  C+ +    + + LF+ MLV   EP+  T+ +LL     ++ L
Sbjct: 427 EDFRNKADSVSWNAILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSL 486

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
           +    +HCY  + G +    +  GLID+Y+KCGSL  A +IF  +   + D+V WS +I 
Sbjct: 487 KLGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGSLRQARRIFDSM--DNGDVVSWSTLIV 544

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           GY   G GE A+ LF+EM  SG++PN VTF   L ACSH GL++EGL L+  M   H   
Sbjct: 545 GYAQSGFGEEALILFREMKSSGIEPNHVTFVGVLTACSHVGLVEEGLKLYAIMQTEHGIS 604

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
              +H +C+VDLL RAG L+EA   I  M L+P   VW  LL AC   GNV+L + AA+ 
Sbjct: 605 PTKEHCSCVVDLLARAGHLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVDLAQKAAEN 664

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           + +++P N   +VLL  ++++   W+DA  +R  M +  ++K P  S I+V +
Sbjct: 665 ILKIDPFNSTAHVLLCSMHASSGNWEDAALLRSSMKKHDVKKIPGQSWIDVED 717



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 160/566 (28%), Positives = 267/566 (47%), Gaps = 35/566 (6%)

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           ++  L N  +    +N    ++L+ F    +   +     TY  +I AC+       G  
Sbjct: 26  KTEELMNDHINSLCRNSFYREALEAFDFAQKNSSFKIRLRTYISLICACSSSRSLAQGRK 85

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H  +L +    DT + N +++MY   G ++ AR+VFD M E ++VS+ ++I+GY +N  
Sbjct: 86  IHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQ 145

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
             EA+ ++  ML++ + PD  +  S++ AC    ++ +G+ +H  V       ++ A NA
Sbjct: 146 EAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNA 205

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG-LFQLMQFEGVRP 311
           L+ MYV+   +++A  VF  +  +D+++W+S+I G++  G    AL  L +++ F    P
Sbjct: 206 LIAMYVRFNQMSDASKVFYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHP 265

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           N    GS L ACSSL     G  +H   IK  L    I   +L DMYA+C  +  + +VF
Sbjct: 266 NEYIFGSSLKACSSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARRVF 325

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
            +  +  T  WN I+AG  +NG A +AV +F +M      P+  +L SLL A      L 
Sbjct: 326 NQIERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLLCAQTKPMALC 385

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           Q M IH ++I+ GFL+ + V   L+ +Y+ C  L     +F +   K  D V W+ I+  
Sbjct: 386 QGMQIHSFIIKCGFLADLSVCNSLLTMYTFCSDLYCCFNLFEDFRNK-ADSVSWNAILTA 444

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG-------------LD 538
              H      + LFK M+ S  +P+ +T  + L  C     L  G             L+
Sbjct: 445 CLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLE 504

Query: 539 LF--NFMLENHQTCSRADHYTCIVDLL---------------GRAGRLDEAYDLIRTMP- 580
            F  N +++ +  C        I D +                ++G  +EA  L R M  
Sbjct: 505 QFIKNGLIDMYAKCGSLRQARRIFDSMDNGDVVSWSTLIVGYAQSGFGEEALILFREMKS 564

Query: 581 --LKPTHAVWGALLGACVIHGNVELG 604
             ++P H  +  +L AC   G VE G
Sbjct: 565 SGIEPNHVTFVGVLTACSHVGLVEEG 590


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/607 (34%), Positives = 340/607 (56%), Gaps = 4/607 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G++   R LFD M ER++  +  ++  Y+Q     ++ ++F+ M R G   PD  T+  +
Sbjct: 97  GNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGT-EPDYVTFVTL 155

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +  C           +  +++  G+D    VGN L+  Y     +  A ++F  M E   
Sbjct: 156 LSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDS 215

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VS+N +I+GY K+   ++A+ +F  M  SG++P   +  +VL A   L +I +G+ IH  
Sbjct: 216 VSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSF 275

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V       N+   NAL+D Y K  SV +AR +FD M E+D V++  +I+GYA +G  + A
Sbjct: 276 VIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYA 335

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
             LF+ +QF           ++LS  S+    + GR +HA TI    + E++V  +L+DM
Sbjct: 336 FDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDM 395

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAKC   + +  +F   + +  VPW A+++  V  G   + ++LF +M    V  + AT 
Sbjct: 396 YAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATF 455

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            SLL A A +A L     +H ++I+ GF+S V   + L+D+Y+KCGS++ A + F E+P 
Sbjct: 456 ASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP- 514

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            D++IV W+ +I+ Y  +G  E  +  FKEMV SG+QP+ V+F   L ACSH GL++EGL
Sbjct: 515 -DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGL 573

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             FN M + ++   R +HY  +VD+L R+GR +EA  L+  MP+ P   +W ++L AC I
Sbjct: 574 WHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRI 633

Query: 598 HGNVELGEVAAKWLFELEP-ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           H N EL   AA  LF +E   +   YV +S +Y+A  +W++   V   M ++G++K PA+
Sbjct: 634 HKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAY 693

Query: 657 SLIEVRN 663
           S +E+++
Sbjct: 694 SWVEIKH 700



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 136/462 (29%), Positives = 228/462 (49%), Gaps = 12/462 (2%)

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           +T   N +I+ Y+  G +  ARK+FD M E + V+W  LI GY +    KEA  +F  M 
Sbjct: 82  NTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQ 141

Query: 205 KSGVEPDCASVVSVLPAC-GYLKEIEMGRMIHELVAG-GRLGKN--IAAWNALVDMYVKC 260
           + G EPD  + V++L  C G+    EMG  I ++     +LG +  +   N LVD Y K 
Sbjct: 142 RCGTEPDYVTFVTLLSGCNGH----EMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKS 197

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
             ++ A  +F  M E D V++ +MI GY+ +G    A+ LF  MQ  G++P   T  ++L
Sbjct: 198 NRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL 257

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
            A   L  +  G+ +H++ IK N    V V  AL+D Y+K + V  + ++F    ++  V
Sbjct: 258 CANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGV 317

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            +N I++G   +G  + A +LFR++     +       ++L   +   D +    IH   
Sbjct: 318 SYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQT 377

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           I     S + V   L+D+Y+KCG  E A  IF+ +    +  V W+ +I+ Y   G  E 
Sbjct: 378 IVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLT--HRSAVPWTAMISAYVQKGFYEE 435

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560
            + LF +M Q+ V  ++ TF S L A +    L  G  L +F++++    S     + ++
Sbjct: 436 GLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSG-FMSNVFSGSALL 494

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           D+  + G + +A    + MP +     W A++ A   +G  E
Sbjct: 495 DVYAKCGSIKDAVQTFQEMPDRNI-VSWNAMISAYAQNGEAE 535



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/408 (30%), Positives = 200/408 (49%), Gaps = 20/408 (4%)

Query: 203 MLKSGVEPDCASVVSVLPACGYLK--EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           ++K+G +PD +   S      +LK  E+   R + E +      KN  + N ++  YVK 
Sbjct: 43  IVKTGFDPDTSR--SNFRVGNFLKNGELSQARQLFEKMPH----KNTVSTNMMISGYVKS 96

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           G++ EAR +FD M ER  VTWT +I GY+     + A  LF  MQ  G  P+ +T  +LL
Sbjct: 97  GNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLL 156

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           S C+      +   +    IK   +  +IV   L+D Y K N + L+ Q+F    +  +V
Sbjct: 157 SGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSV 216

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            +NA++ G   +GL  KAV LF +M    ++P + T  ++L A   L D+     IH ++
Sbjct: 217 SYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFV 276

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           I+  F+  V VS  L+D YSK  S+  A K+F E+P  ++D V ++VII+GY   G  + 
Sbjct: 277 IKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMP--EQDGVSYNVIISGYAWDGKHKY 334

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY---- 556
           A  LF+E+  +     +  F + L   S+    + G       +      + AD      
Sbjct: 335 AFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGR-----QIHAQTIVTTADSEILVG 389

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
             +VD+  + G+ +EA ++I T     +   W A++ A V  G  E G
Sbjct: 390 NSLVDMYAKCGKFEEA-EMIFTNLTHRSAVPWTAMISAYVQKGFYEEG 436



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 111/265 (41%), Gaps = 40/265 (15%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLR-SSLVRAY---GHVSNVRILFDEMSERS 74
           L++  A+  S++  KQLH+FII SG +      S+L+  Y   G + +    F EM +R+
Sbjct: 458 LLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRN 517

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
              +N ++  YAQNG +  +LK F  M+ L    PD+ ++  V+ AC+           H
Sbjct: 518 IVSWNAMISAYAQNGEAEATLKSFKEMV-LSGLQPDSVSFLGVLSACS-----------H 565

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI-SGYFKNAYA 193
             ++  G     +  N +  +Y             D   EH     + L  SG F  A  
Sbjct: 566 SGLVEEGL----WHFNSMTQIYK-----------LDPRREHYASVVDMLCRSGRFNEA-- 608

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
            E L     M +  ++PD     SVL AC   K  E+ R   + +      ++ A +  +
Sbjct: 609 -EKL-----MAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNM 662

Query: 254 VDMYVKCGSVNEARLVFDRMSERDV 278
            ++Y   G       V   M +R V
Sbjct: 663 SNIYAAAGQWENVSKVHKAMRDRGV 687


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/602 (34%), Positives = 345/602 (57%), Gaps = 8/602 (1%)

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYT---YPIVIKA 120
           R +FD M++ ++F++N +++ Y+   A  D+L +F  M R G  +PDNYT         A
Sbjct: 72  RKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRG-VSPDNYTMAAVVSASAA 130

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
              L WR  G A+H  V   GF  D FV + L+  Y  F  VK A KVF+ M+E  VVSW
Sbjct: 131 FAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSW 190

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
            ++IS   +  +  + L +   M   G+ P+  +++S+L ACG  + ++ GR ++  V  
Sbjct: 191 TSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGK 250

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
             +  ++   NAL+ MY KCG +++A   F  M  R   +W ++I+G+  N + + AL +
Sbjct: 251 FGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRI 310

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
           F+ M   GV P+ +T+ S+LSAC+ L  L++G  +H++     + C+ I+  +LI+MYAK
Sbjct: 311 FEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAK 370

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           C  +  + +VF   +KK  V W  ++ G V       A  LF +M +  V  ++  L SL
Sbjct: 371 CGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSL 430

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L A + L  L +   IH Y+        + + + L+D+Y+KCG +++A +IF +  ++ K
Sbjct: 431 LSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRK--MQHK 488

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQ-SGVQPNEVTFTSALHACSHGGLLDEGLDL 539
             + W+ +I G   +G+G+ AV LF +M++    +P+ +T  + L AC+H G++DEGL  
Sbjct: 489 QTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRY 548

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           F +++ +       +HY CIVDLLGRAG LDEA+  I+ MP++P   +WG+LL AC +H 
Sbjct: 549 F-YLMSSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVHH 607

Query: 600 NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
            ++LG+V  + +  + P + G +VL+S L++   +W D E+VR +M  +G+ K P HS +
Sbjct: 608 RMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIEKTPGHSSV 667

Query: 660 EV 661
           +V
Sbjct: 668 QV 669



 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 167/503 (33%), Positives = 262/503 (52%), Gaps = 12/503 (2%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFG---EVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           LHGR++      D+FV   LIA+  +     +++ ARKVFD M + +   WN +I GY  
Sbjct: 36  LHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSS 95

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY---LKEIEMGRMIHELVAGGRLGKN 246
               ++AL VF  M + GV PD  ++ +V+ A      LK    G  IH LV       +
Sbjct: 96  CEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSD 155

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           +   + LV+ Y    SV EA  VF+ M ERDVV+WTSMI+  A  G     L +   MQ 
Sbjct: 156 VFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQA 215

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
           EG+ PN +TI SLLSAC     +  GR ++    K  +E +V +  ALI MY KC  +  
Sbjct: 216 EGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSD 275

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           + + F     + T  WN ++ G V N   ++A+ +F +ML+  V P+  TL S+L A A 
Sbjct: 276 ALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQ 335

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           L +L++ M++H Y+   G      ++  LI++Y+KCG + +A ++F    +  KD+V W+
Sbjct: 336 LGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQ--TMTKKDVVSWT 393

Query: 487 VIIAGYGMHGHGET-AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           V++ GY + GH  T A +LF+EM  + V  +E+   S L ACS  G LD+G ++ ++ +E
Sbjct: 394 VMVCGY-VKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSY-IE 451

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
                      + +VD+  + G +D A ++ R M  K T + W A++G    +G  +   
Sbjct: 452 EMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLS-WNAMIGGLASNGYGKEAV 510

Query: 606 VAAKWLFELEPENPGNYVLLSKL 628
                + EL+   P    L + L
Sbjct: 511 ELFDQMLELQDPKPDGITLKAVL 533



 Score =  245 bits (625), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 156/483 (32%), Positives = 252/483 (52%), Gaps = 11/483 (2%)

Query: 51  SSLVRAYGHVSNVR---ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           S LV  YG   +V+    +F+EM ER    + +++   AQ G     LKM   M   G  
Sbjct: 160 SGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEG-I 218

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            P+  T   ++ AC        G  ++ +V   G + D  + N LI+MY   G +  A +
Sbjct: 219 IPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALE 278

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
            F AM      SWNTLI G+ +N   KEAL +F+ ML  GV PD  ++VSVL AC  L E
Sbjct: 279 AFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGE 338

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +  G  +H  +    +  +    N+L++MY KCG +  A  VF  M+++DVV+WT M+ G
Sbjct: 339 LRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCG 398

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y        A  LF+ M+   V  + + + SLLSACS L  L +GR +H++  + N+  +
Sbjct: 399 YVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKD 458

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML- 406
           + +E+AL+DMYAKC  +  + ++F +   K+T+ WNA++ G   NG  ++AVELF QML 
Sbjct: 459 LCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLE 518

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
           ++  +P+  TL ++L A A +  + + +     +   G +   E    ++D+  + G L+
Sbjct: 519 LQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRAGMLD 578

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV---TFTSA 523
            A     ++PI + + V+W  ++A   +H   +    + + +V   V PN+V      S 
Sbjct: 579 EAFHFIKKMPI-EPNPVIWGSLLAACRVHHRMDLGKVIGQHIVN--VAPNDVGVHVLVSN 635

Query: 524 LHA 526
           LHA
Sbjct: 636 LHA 638



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 196/383 (51%), Gaps = 18/383 (4%)

Query: 49  LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           +R++L+  Y   G +S+    F  M  R +  +NT++  + QN    ++L++F  ML  G
Sbjct: 259 IRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHG 318

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
              PD  T   V+ AC  L   + G+ +H  +   G   D  + N LI MY   G++ AA
Sbjct: 319 -VTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAA 377

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
            +VF  M +  VVSW  ++ GY K      A  +F+ M  + V     ++VS+L AC  L
Sbjct: 378 ERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQL 437

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
             ++ GR IH  +    + K++   +ALVDMY KCG ++ A  +F +M  +  ++W +MI
Sbjct: 438 GALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMI 497

Query: 286 NGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
            G A NG  + A+ LF Q+++ +  +P+ +T+ ++L AC+ +  +  G  L  + +  +L
Sbjct: 498 GGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEG--LRYFYLMSSL 555

Query: 345 ECEVIVET----ALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGC-VHNGLARKA 398
              V+ +T     ++D+  +  ++  +F    +   +   V W ++LA C VH+ +    
Sbjct: 556 --GVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGK 613

Query: 399 VELFRQMLVEVVEPNDATLNSLL 421
           V    Q +V V  PND  ++ L+
Sbjct: 614 V--IGQHIVNVA-PNDVGVHVLV 633


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 226/634 (35%), Positives = 341/634 (53%), Gaps = 9/634 (1%)

Query: 33  KQLHAFIITSGPLFTHL--RSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQ 87
           KQ+HA  I  G  F+ L   S+LV  Y     + +   +F  M ++++  +N ++  +AQ
Sbjct: 249 KQVHAEAIKVGD-FSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQ 307

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
            G +   L +F  M    E N   +T   V+K C +    + G  +H   +  G ++D F
Sbjct: 308 MGDAEKVLNLFCRMTG-SEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEF 366

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           +  CL+ MY   G    A KVF  + +  VVSW+ +I+   +   ++EA  VF  M  SG
Sbjct: 367 ISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSG 426

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           V P+  ++ S++ A   L ++  G  IH  V       +    NALV MY+K GSV +  
Sbjct: 427 VIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGC 486

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VF+  + RD+++W ++++G+  N      L +F  M  EG  PN  T  S+L +CSSL 
Sbjct: 487 RVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLS 546

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            +  G+ +HA  +K +L+    V TAL+DMYAK   ++ +  +F R  K+    W  I+A
Sbjct: 547 DVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVA 606

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G   +G   KAV+ F QM  E V+PN+ TL S L   + +A L     +H   I+ G   
Sbjct: 607 GYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSG 666

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            + V++ L+D+Y+KCG +E A  +F    +  +D V W+ II GY  HG G  A+  F+ 
Sbjct: 667 DMFVASALVDMYAKCGCVEDAEVVFD--GLVSRDTVSWNTIICGYSQHGQGGKALKAFEA 724

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M+  G  P+EVTF   L ACSH GL++EG   FN + + +      +HY C+VD+LGRAG
Sbjct: 725 MLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAG 784

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
           +  E    I  M L     +W  +LGAC +HGN+E GE AA  LFELEPE   NY+LLS 
Sbjct: 785 KFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSN 844

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +++A   W D  NVR +M  +G++K P  S +EV
Sbjct: 845 MFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEV 878



 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 180/590 (30%), Positives = 294/590 (49%), Gaps = 17/590 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNVRI---LFDEMSERS 74
           +++  A+   +   K +H  +I SG    +HL +SLV  Y    +      +F E+ ER 
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
              +  ++  +   G    ++ +F  M R G    + +TY   +KAC+     + G  +H
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREG-VEANEFTYATALKACSMCLDLEFGKQVH 252

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
              +  G   D FVG+ L+ +Y   GE+  A +VF  M + + VSWN L++G+ +   A+
Sbjct: 253 AEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAE 312

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV--AGGRLGKNIAAWNA 252
           + L +F  M  S +     ++ +VL  C     +  G+++H L    G  L + I+    
Sbjct: 313 KVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISC--C 370

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           LVDMY KCG   +A  VF R+ + DVV+W+++I      G  R A  +F+ M+  GV PN
Sbjct: 371 LVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPN 430

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
             T+ SL+SA + L  L  G S+HA   K   E +  V  AL+ MY K   V+   +VF 
Sbjct: 431 QFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFE 490

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
            T+ +  + WNA+L+G   N      + +F QML E   PN  T  S+L + + L+D+  
Sbjct: 491 ATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDL 550

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              +H  +++        V T L+D+Y+K   LE A  IF+ + IK +D+  W+VI+AGY
Sbjct: 551 GKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL-IK-RDLFAWTVIVAGY 608

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
              G GE AV  F +M + GV+PNE T  S+L  CS    LD G  L +  ++  Q+   
Sbjct: 609 AQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQS--- 665

Query: 553 ADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
            D +  + +VD+  + G +++A  +   +  + T   W  ++     HG 
Sbjct: 666 GDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDT-VSWNTIICGYSQHGQ 714



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 151/524 (28%), Positives = 261/524 (49%), Gaps = 13/524 (2%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           Y  +++ C        G A+HG+V+ +G + D+ + N L+ +Y   G    A KVF  + 
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
           E  VVSW  LI+G+    Y   A+ +F  M + GVE +  +  + L AC    ++E G+ 
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 234 IH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
           +H E +  G    ++   +ALVD+Y KCG +  A  VF  M +++ V+W +++NG+A  G
Sbjct: 251 VHAEAIKVGDF-SDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMG 309

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
           D    L LF  M    +  +  T+ ++L  C++   L+ G+ +H+  I+   E +  +  
Sbjct: 310 DAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISC 369

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
            L+DMY+KC L   + +VF R      V W+AI+      G +R+A E+F++M    V P
Sbjct: 370 CLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIP 429

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           N  TL SL+ A   L DL    +IH  + +YGF     V   L+ +Y K GS++   ++F
Sbjct: 430 NQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVF 489

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
                 ++D++ W+ +++G+  +   +T + +F +M+  G  PN  TF S L +CS    
Sbjct: 490 E--ATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSD 547

Query: 533 LDEGLDLFNFMLENHQTCSRADHY-TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
           +D G  +   +++N  +    D   T +VD+  +   L++A  +   + +K     W  +
Sbjct: 548 VDLGKQVHAQIVKN--SLDGNDFVGTALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVI 604

Query: 592 LGACVIHGNVELGEVAAKWLFELEPE--NPGNYVLLSKLYSAVR 633
           +      G    GE A K   +++ E   P  + L S L    R
Sbjct: 605 VAGYAQDGQ---GEKAVKCFIQMQREGVKPNEFTLASSLSGCSR 645


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/602 (34%), Positives = 333/602 (55%), Gaps = 3/602 (0%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F +M  R +  +NT++  +AQ G    +L++F  M +    +PD  T   ++ AC  L 
Sbjct: 200 VFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEM-QFSGLSPDCVTISSLLAACASLG 258

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             + G  LH  +   G   D  +   L+ +Y+  G+V+ A  +F++    +VV WN ++ 
Sbjct: 259 DLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLV 318

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
            + +     ++  +F  M  +G+ P+  +   +L  C   +EI++G  IH L        
Sbjct: 319 AFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFES 378

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           ++     L+DMY K G + +AR V + + E+DVV+WTSMI GY  +   ++AL  F+ MQ
Sbjct: 379 DMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQ 438

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
             G+ P+++ + S +S C+ +  +++G  +HA         +V +  AL+++YA+C  ++
Sbjct: 439 KCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIR 498

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            +F  F     K  +  N +++G   +GL  +A+++F +M    V+ N  T  S L A A
Sbjct: 499 EAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASA 558

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            LA+++Q   IH  +I+ G     EV   LI +Y KCGS E A   FSE+   +++ V W
Sbjct: 559 NLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEM--SERNEVSW 616

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + II     HG G  A+ LF +M + G++PN+VTF   L ACSH GL++EGL  F  M +
Sbjct: 617 NTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSD 676

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
            +    R DHY C++D+ GRAG+LD A   I  MP+     VW  LL AC +H N+E+GE
Sbjct: 677 EYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGE 736

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
            AAK L ELEP +  +YVLLS  Y+   +W + + VR +M ++G+RK P  S IEV+N++
Sbjct: 737 FAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVV 796

Query: 666 TA 667
            A
Sbjct: 797 HA 798



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 169/632 (26%), Positives = 306/632 (48%), Gaps = 17/632 (2%)

Query: 34  QLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           ++HA  +T G     +  +L   L    G V   R +F+E+S R +  +  ++  YAQNG
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              ++L ++  M R G   P  Y    V+ +CT       G  +H +    GF  + FVG
Sbjct: 123 LGEEALGLYRQMHRAGVV-PTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N +I +Y+  G  + A +VF  M     V++NTLISG+ +  + + AL +F+ M  SG+ 
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLS 241

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PDC ++ S+L AC  L +++ G  +H  +    +  +     +L+D+YVKCG V  A ++
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F+     +VV W  M+  +    D+  +  LF  MQ  G+RPN  T   +L  C+    +
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREI 361

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
             G  +H+ ++K   E ++ V   LIDMY+K   ++ + +V     +K  V W +++AG 
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
           V +   + A+  F++M    + P++  L S +   A +  ++Q + IH  +   G+   V
Sbjct: 422 VQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDV 481

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            +   L+++Y++CG +  A   F E+ +KD   +  + +++G+   G  E A+ +F  M 
Sbjct: 482 SIWNALVNLYARCGRIREAFSSFEEMELKDG--ITGNGLVSGFAQSGLHEEALKVFMRMD 539

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           QSGV+ N  TF SAL A ++   + +G  +   +++   +    +    ++ L G+ G  
Sbjct: 540 QSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFE-TEVGNALISLYGKCGSF 598

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE--NPGNYVLLSK 627
           ++A      M  +     W  ++ +C  HG    G  A     +++ E   P +   +  
Sbjct: 599 EDAKMEFSEMSER-NEVSWNTIITSCSQHGR---GLEALDLFDQMKKEGIKPNDVTFIGV 654

Query: 628 LYSAVRRWKDAENV---RDVMDEKGLRKAPAH 656
           L +        E +   + + DE G+R  P H
Sbjct: 655 LAACSHVGLVEEGLSYFKSMSDEYGIRPRPDH 686



 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 144/489 (29%), Positives = 252/489 (51%), Gaps = 9/489 (1%)

Query: 34  QLHAFIITSGPLFTH-LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           QLH+++  +G    + +  SL+  Y   G V    ++F+     +  L+N ++  + Q  
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQIN 324

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
               S ++F  M   G   P+ +TYP +++ CT      LG  +H   + TGF+ D +V 
Sbjct: 325 DLAKSFELFCQMQAAG-IRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVS 383

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
             LI MY  +G ++ AR+V + + E  VVSW ++I+GY ++   K+AL  F  M K G+ 
Sbjct: 384 GVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIW 443

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PD   + S +  C  +  +  G  IH  +       +++ WNALV++Y +CG + EA   
Sbjct: 444 PDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSS 503

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F+ M  +D +T   +++G+A +G    AL +F  M   GV+ N  T  S LSA ++L  +
Sbjct: 504 FEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEI 563

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           K+G+ +HA  IK     E  V  ALI +Y KC   + +   F+  S++  V WN I+  C
Sbjct: 564 KQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSC 623

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI-RYGFLSV 448
             +G   +A++LF QM  E ++PND T   +L A + +  +++ ++    +   YG    
Sbjct: 624 SQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPR 683

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
            +    +IDI+ + G L+ A K   E+PI   D +VW  +++   +H + E      K +
Sbjct: 684 PDHYACVIDIFGRAGQLDRAKKFIEEMPIA-ADAMVWRTLLSACKVHKNIEVGEFAAKHL 742

Query: 509 VQSGVQPNE 517
           ++  ++P++
Sbjct: 743 LE--LEPHD 749


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/652 (33%), Positives = 351/652 (53%), Gaps = 7/652 (1%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRI 65
           P    L+   ++  A +++    +Q+H      G      + ++LV  Y   G +     
Sbjct: 134 PPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMS 193

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD +  R+   +  V+  Y+Q G +  +L++F G + L    PD +       AC+ L 
Sbjct: 194 VFDALPARNPVTWTAVITGYSQAGQAGVALELF-GRMGLDGVRPDRFVLASAASACSGLG 252

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
           + + G  +HG    T  + D  V N LI +Y     +  AR++FD+M   ++VSW T+I+
Sbjct: 253 FVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIA 312

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY +N+   EA+ +F  + ++G +PD  +  S+L +CG L  I  GR +H  V    L  
Sbjct: 313 GYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLES 372

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           +    NAL+DMY KC  + EAR VF+ ++E D +++ +MI GYA  GD+  A+ +F  M+
Sbjct: 373 DEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKMR 432

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
           +  ++P+ LT  SLL   SS   L+  + +H   +K     ++   +ALID+Y+K +LV 
Sbjct: 433 YCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVD 492

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            +  VF+    +  V WNA++ G   N    +AV+LF ++ V  + PN+ T  +L+   +
Sbjct: 493 DAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVALVTVAS 552

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            LA +      H  +I+ G  S   +S  LID+Y+KCG +E    +F       KD++ W
Sbjct: 553 TLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFIEEGRLLFES--TLGKDVICW 610

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I+ Y  HGH E A+ +F  M  +GV+PN VTF S L AC+H GL+DEGL  FN M  
Sbjct: 611 NSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSACAHAGLVDEGLHHFNSMKT 670

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
            +      +HY  +V+L GR+G+L  A + I  MP++P   +W +LL AC + GNVE+G 
Sbjct: 671 KYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPVATIWRSLLSACHLFGNVEIGR 730

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
            A +     +P + G  VL+S +Y++   W DA+ +R  MD  G+ K P +S
Sbjct: 731 YATEMALLADPADSGPSVLMSNIYASKGLWADAQKLRQGMDCAGVVKEPGYS 782



 Score =  274 bits (701), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 186/616 (30%), Positives = 296/616 (48%), Gaps = 54/616 (8%)

Query: 36  HAFIITSGPLFT-HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGAS 91
           HA  + SG L    L + L+R Y   G + + R LFD M  R+   + + + MYAQ+G  
Sbjct: 53  HARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGRE 112

Query: 92  HDSLKMFLGMLRLGEYNPDN-----YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
            D+L +F      G  +PD      +     ++AC      + G  +HG     G D + 
Sbjct: 113 DDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANV 172

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
           FVG  L+ +Y   G + AA  VFDA+   + V+W  +I+GY +   A  AL +F  M   
Sbjct: 173 FVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLD 232

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           GV PD   + S   AC  L  +E GR IH          + +  NAL+D+Y KC  +  A
Sbjct: 233 GVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLA 292

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
           R +FD M  R++V+WT+MI GY  N     A+ +F  +   G +P+     S+L++C SL
Sbjct: 293 RRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSL 352

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             + +GR +HA  IK +LE +  V+ ALIDMYAKC  +  +  VF   ++   + +NA++
Sbjct: 353 AAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMI 412

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
            G    G    AVE+F +M    ++P+  T  SLL   +  +DL+ +  IH  +++ G  
Sbjct: 413 EGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTS 472

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
             +   + LID+YSK   ++ A  +FS   ++++D+V+W+ +I G   +  GE AV LF 
Sbjct: 473 LDLYAGSALIDVYSKFSLVDDAKLVFSL--MQNRDMVIWNAMIFGLAQNERGEEAVKLFA 530

Query: 507 EMVQSGVQPNEVTF------TSALHACSHG-----------------------------G 531
            +  SG+ PNE TF       S L +  HG                             G
Sbjct: 531 RLRVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCG 590

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA---YDLIRTMPLKPTHAVW 588
            ++EG  LF   L     C     +  ++    + G  +EA   + ++    ++P +  +
Sbjct: 591 FIEEGRLLFESTLGKDVIC-----WNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTF 645

Query: 589 GALLGACVIHGNVELG 604
            ++L AC   G V+ G
Sbjct: 646 VSVLSACAHAGLVDEG 661



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 142/497 (28%), Positives = 245/497 (49%), Gaps = 17/497 (3%)

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
           R++    H R +++G   D F+ N L+  Y   G +  AR++FD+M   ++VSW + IS 
Sbjct: 46  RRVLPPAHARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISM 105

Query: 187 YFKNAYAKEALVVFDWMLKSGV-EPDCAS-----VVSVLPACGYLKEIEMGRMIHELVAG 240
           Y ++    +AL++F     +G   PD        + S L AC   +    G  +H + A 
Sbjct: 106 YAQHGREDDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAK 165

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
             L  N+    ALV++Y K G ++ A  VFD +  R+ VTWT++I GY+  G    AL L
Sbjct: 166 LGLDANVFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALEL 225

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
           F  M  +GVRP+   + S  SACS L +++ GR +H +  +   E +  V  ALID+Y K
Sbjct: 226 FGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCK 285

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           C+ + L+ ++F     +  V W  ++AG + N L  +A+ +F Q+     +P+     S+
Sbjct: 286 CSRLLLARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSI 345

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L +   LA + Q   +H ++I+    S   V   LID+Y+KC  L  A  +F    + + 
Sbjct: 346 LNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFE--ALAED 403

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
           D + ++ +I GY   G    AV +F +M    ++P+ +TF S L   S    L+    + 
Sbjct: 404 DAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIH 463

Query: 541 NFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
             ++++  +    D Y  + ++D+  +   +D+A  L+ ++       +W A++     +
Sbjct: 464 GLIVKSGTSL---DLYAGSALIDVYSKFSLVDDA-KLVFSLMQNRDMVIWNAMIFGLAQN 519

Query: 599 GNVELGEVAAKWLFELE 615
              E GE A K    L 
Sbjct: 520 ---ERGEEAVKLFARLR 533


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/639 (34%), Positives = 341/639 (53%), Gaps = 10/639 (1%)

Query: 32  TKQLHAFIITSGPLF-THLRSSLVRAYGHVSNV----RILFDEMSERSSFLYNTVMKMYA 86
           T Q+HA  +    LF  ++ SSLV AY     V    R L D    RS   +N ++  YA
Sbjct: 180 TPQVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDS-PVRSDVSWNALLNEYA 238

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           ++G     + +F  ++  G+     YT P V+K C +L   K G A+HG V+  G + D 
Sbjct: 239 RDGDYAKVMLVFDKLVESGD-EISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDR 297

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
            + NCLI MY      + A +VF  + E  VV  + +IS + ++  A EA  +F  M   
Sbjct: 298 VLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDM 357

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           GV+P+  + V +        ++ + R IH  +      +     +A+V MYVK G+V +A
Sbjct: 358 GVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDA 417

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
            L FD M   D+ +W ++++G+    +  + L +F+ +  EGV  N  T   +L  C+SL
Sbjct: 418 ILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSL 477

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             L+ G  +HA  +K   + +  V   L+DMY +      +  VF R  ++    W  ++
Sbjct: 478 MDLRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVM 537

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           +         KA+E FR ML E   PNDATL + L   + LA L   + +H Y I+ G+ 
Sbjct: 538 STYAKTDEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGWN 597

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           S V VS+ L+D+Y KCG+L  A  +F E      D+V W+ II GY  HGHG  A+  F+
Sbjct: 598 SSV-VSSALVDMYVKCGNLADAEMLFDESDT--HDLVEWNTIICGYAQHGHGYKALEAFQ 654

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           EM+  G  P+E+TF   L ACSH GLLDEG   F  +   +      +HY C+VD+L +A
Sbjct: 655 EMIDEGNVPDEITFVGVLSACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKA 714

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           G+L EA  LI  MPL P  ++W  +LGAC +HGN+E+ E AA+ LFE +P++  + +LLS
Sbjct: 715 GKLAEAESLINEMPLTPDASLWKTILGACRMHGNIEIAERAAEKLFESQPDDISSCILLS 774

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
            +Y+ ++RW D   +R ++ ++G++K P  S IE+   L
Sbjct: 775 NIYADLKRWNDVAKLRSMLVDRGVKKEPGCSWIEINGKL 813



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 150/557 (26%), Positives = 262/557 (47%), Gaps = 9/557 (1%)

Query: 20  VQQYAATKSIAGTKQLHAFIITSGPL-FTHLRSSLVRAY---GHVSNVRILFDEMSERSS 75
           +Q  AA++++   K LHA ++ SGP     L  SL+  Y   G +++ R +FD M  R  
Sbjct: 67  LQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGMPHRDV 126

Query: 76  FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHG 135
             +  ++      G +  +L++F  M   G   P+ +     +KACT  +       +H 
Sbjct: 127 VAWTAMVSAITAAGDAGAALRLFAEMSEEGVV-PNGFALAAALKACTVGSDLGFTPQVHA 185

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
           + +      D +V + L+  Y++ GEV  A +        S VSWN L++ Y ++    +
Sbjct: 186 QAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDGDYAK 245

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
            ++VFD +++SG E    ++ +VL  C  L   + G+ +H LV    L  +    N L++
Sbjct: 246 VMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIE 305

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           MY KC S  +A  VF R+ E DVV  + MI+ +  +     A  +F  M   GV+PN  T
Sbjct: 306 MYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYT 365

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
              L    S    +   RS+HA  +K        V  A++ MY K   V+ +   F    
Sbjct: 366 FVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQ 425

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
                 WN +L+G          + +F++++ E V  N  T   +L     L DL+    
Sbjct: 426 GPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLRFGCQ 485

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           +H  +++ GF    +VS  L+D+Y + G   +A  +F    +K++D+  W+V+++ Y   
Sbjct: 486 VHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDR--LKERDVFSWTVVMSTYAKT 543

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
             GE A+  F+ M++   +PN+ T  ++L  CS    L  GL L ++ +++    S    
Sbjct: 544 DEGEKAIECFRSMLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGWNSSVVS- 602

Query: 556 YTCIVDLLGRAGRLDEA 572
            + +VD+  + G L +A
Sbjct: 603 -SALVDMYVKCGNLADA 618



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 204/416 (49%), Gaps = 2/416 (0%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           +Y   ++ C      + G ALH R+L +G   D F+ + L+ MY   G +  AR VFD M
Sbjct: 62  SYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGM 121

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
               VV+W  ++S       A  AL +F  M + GV P+  ++ + L AC    ++    
Sbjct: 122 PHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTP 181

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            +H          +    ++LV+ YV CG V+ A         R  V+W +++N YA +G
Sbjct: 182 QVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDG 241

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
           D    + +F  +   G   +  T+ ++L  C  L   K G+++H   IK+ LE + ++  
Sbjct: 242 DYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNN 301

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
            LI+MY+KC   + +++VFAR  +   V  + +++    + +A +A ++F QM    V+P
Sbjct: 302 CLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKP 361

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           N  T   L    +   D+    +IH ++++ GF     V   ++ +Y K G+++ A  I 
Sbjct: 362 NQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDA--IL 419

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
           +   ++  DI  W+ +++G+    + E  + +FKE++  GV  N+ T+   L  C+
Sbjct: 420 AFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCT 475



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 122/257 (47%), Gaps = 3/257 (1%)

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           L  C++   L+RG++LHA  ++     +  +  +L++MY KC  +  +  VF     +  
Sbjct: 67  LQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGMPHRDV 126

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           V W A+++     G A  A+ LF +M  E V PN   L + L A  + +DL     +H  
Sbjct: 127 VAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDLGFTPQVHAQ 186

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            ++   L    VS+ L++ Y  CG ++ A +   + P++    V W+ ++  Y   G   
Sbjct: 187 AVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSD--VSWNALLNEYARDGDYA 244

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
             + +F ++V+SG + ++ T  + L  C   GL   G  +   +++      R  +  C+
Sbjct: 245 KVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLN-NCL 303

Query: 560 VDLLGRAGRLDEAYDLI 576
           +++  +    ++AY++ 
Sbjct: 304 IEMYSKCLSAEDAYEVF 320


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 224/664 (33%), Positives = 366/664 (55%), Gaps = 26/664 (3%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-----PLFTHLRSSLVRAYGHVSNVRILFDEMSER 73
           L++  A  + +   KQ+HA +   G         +   +L R  G    V  +FD +SER
Sbjct: 99  LLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISER 158

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK---LG 130
           +   +N+++           +L+ F  ML   +  P ++T   V  AC++    +   +G
Sbjct: 159 NQVSWNSLISSLCSFEKWEMALEAFRCMLD-EDVEPSSFTLVSVALACSNFPMPEGLLMG 217

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
             +H   L  G ++++F+ N L+AMY   G++ +++ +  +     +V+WNT++S   +N
Sbjct: 218 KQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQN 276

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-VAGGRLGKNIAA 249
               EAL     M+  GVEPD  ++ SVLPAC +L+ +  G+ +H   +  G L +N   
Sbjct: 277 EQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 336

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQFEG 308
            +ALVDMY  C  V     VFD M +R +  W +MI GYA N     AL LF ++ +  G
Sbjct: 337 GSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAG 396

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           +  NS T+  ++ AC       +  ++H + +K+ L+ +  V+ AL+DMY++   + ++ 
Sbjct: 397 LLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAK 456

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV-----------EVVEPNDATL 417
           ++F +   +  V WN I+ G V +     A+ +  +M +             ++PN  TL
Sbjct: 457 RIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITL 516

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            ++LP+ A L+ L +   IH Y I+    + V V + L+D+Y+KCG L+ + K+F +IPI
Sbjct: 517 MTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPI 576

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
           ++  ++ W+VI+  YGMHG+ + A+ + + M+  GV+PNEVTF S   ACSH G+++EGL
Sbjct: 577 RN--VITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGL 634

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA-VWGALLGACV 596
            +F  M +++     +DHY C+VDLLGRAGR+ EAY LI  +P     A  W +LLGAC 
Sbjct: 635 KIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACR 694

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           IH N+E+GE+AA+ L +LEP    +YVLL+ +YS+   W  A  VR  M  +G+RK P  
Sbjct: 695 IHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGC 754

Query: 657 SLIE 660
           S IE
Sbjct: 755 SWIE 758



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 157/523 (30%), Positives = 259/523 (49%), Gaps = 25/523 (4%)

Query: 98  FLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF-VGNCLIAMY 156
           ++ M+ LG   PDN+ +P ++KA  DL    LG  +H  V   G+ +D+  V N L+ +Y
Sbjct: 81  YIDMIVLG-IKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLY 139

Query: 157 MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVV 216
              G+  A  KVFD + E + VSWN+LIS        + AL  F  ML   VEP   ++V
Sbjct: 140 RKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLV 199

Query: 217 SVLPACGYLKEIE---MGRMIHELVAGGRLGK-NIAAWNALVDMYVKCGSVNEARLVFDR 272
           SV  AC      E   MG+ +H    G R G+ N    N LV MY K G +  ++++   
Sbjct: 200 SVALACSNFPMPEGLLMGKQVH--AYGLRKGELNSFIINTLVAMYGKMGKLASSKVLLGS 257

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
              RD+VTW ++++    N     AL   + M  EGV P+  TI S+L ACS L  L+ G
Sbjct: 258 FEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTG 317

Query: 333 RSLHAWTIKQ-NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVH 391
           + LHA+ +K  +L+    V +AL+DMY  C  V    +VF     +K   WNA++ G   
Sbjct: 318 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQ 377

Query: 392 NGLARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
           N    +A+ LF +M     +  N  T+  ++PA        +   IH ++++ G      
Sbjct: 378 NEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRF 437

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM-- 508
           V   L+D+YS+ G ++ A +IF +  ++D+D+V W+ II GY      E A+ +  +M  
Sbjct: 438 VQNALMDMYSRLGKIDIAKRIFGK--MEDRDLVTWNTIITGYVFSERHEDALLMLHKMQI 495

Query: 509 ---------VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
                     +  ++PN +T  + L +C+    L +G ++  + ++N+     A   + +
Sbjct: 496 LERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG-SAL 554

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           VD+  + G L  +  +   +P++     W  ++ A  +HGN +
Sbjct: 555 VDMYAKCGCLQMSRKVFDQIPIRNV-ITWNVIVMAYGMHGNSQ 596



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 206/411 (50%), Gaps = 10/411 (2%)

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
           HS   W  L+    ++   +EA++ +  M+  G++PD  +  ++L A   L+++++G+ I
Sbjct: 56  HSPEWWIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQI 115

Query: 235 HELVAGGRLG-KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           H  V     G  ++   N LV++Y KCG       VFDR+SER+ V+W S+I+       
Sbjct: 116 HAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEK 175

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY---LKRGRSLHAWTIKQNLECEVIV 350
              AL  F+ M  E V P+S T+ S+  ACS+      L  G+ +HA+ +++      I+
Sbjct: 176 WEMALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFII 235

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
            T L+ MY K   +  S  +      +  V WN +L+    N    +A+E  R+M++E V
Sbjct: 236 NT-LVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGV 294

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE-VSTGLIDIYSKCGSLESAH 469
           EP+  T++S+LPA + L  L+    +H Y ++ G L     V + L+D+Y  C  + S  
Sbjct: 295 EPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGC 354

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS-GVQPNEVTFTSALHACS 528
           ++F    + D+ I +W+ +I GY  + + E A+ LF EM +S G+  N  T    + AC 
Sbjct: 355 RVFD--GMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACV 412

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
             G   +   +  F+++      R      ++D+  R G++D A  +   M
Sbjct: 413 RSGAFSKKEAIHGFVVKRGLDRDRFVQ-NALMDMYSRLGKIDIAKRIFGKM 462


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/640 (33%), Positives = 350/640 (54%), Gaps = 9/640 (1%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAYGH----VSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           +QLH  +I  G    T++ + LV  Y      +S  RI F  M+ R    YN+++    Q
Sbjct: 281 EQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERI-FSTMNSRDGVSYNSLISGLVQ 339

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
            G S  +L++F  M R     PD  T   ++ AC  +     G+ LH   +  G   D  
Sbjct: 340 QGFSDRALELFTKMQR-DCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADII 398

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           +   L+ +Y    +V+ A K F      ++V WN ++  Y +     ++  +F  M   G
Sbjct: 399 LEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEG 458

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           + P+  +  S+L  C  L  + +G  IH  V       N+   + L+DMY K G +  A 
Sbjct: 459 MIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALAL 518

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +  R+ E DVV+WT+MI GY  +     AL LF+ M++ G++ +++   S +SAC+ + 
Sbjct: 519 RILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIR 578

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L++G+ +HA +       ++ +  ALI +YA+C  ++ ++  F +   K  + WN++++
Sbjct: 579 ALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVS 638

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G   +G   +A+++F +ML    E N  T  S + A A LA+++Q   IH  +++ G+ S
Sbjct: 639 GLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDS 698

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
             EVS  LI +Y+K GS+  A + F+++   +++++ W+ +I GY  HG G  A+ LF+E
Sbjct: 699 EREVSNSLISLYAKSGSISDAWREFNDMS--ERNVISWNAMITGYSQHGCGMEALRLFEE 756

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M   G+ PN VTF   L ACSH GL+ EGLD F  M + H    +++HY C+VDLLGRAG
Sbjct: 757 MKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAG 816

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
           +LD A + I+ MP+     +W  LL ACVIH N+E+GE AA  L ELEPE+   YVL+S 
Sbjct: 817 QLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISN 876

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           +Y+  R+W   +  R +M ++G++K P  S IEV+N + A
Sbjct: 877 IYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHA 916



 Score =  265 bits (676), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 183/566 (32%), Positives = 289/566 (51%), Gaps = 21/566 (3%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG----PLFTHLRSSLVRAY---GHVSNVRILFDEMS 71
           L++    + S+  T +LH  I  SG    PL   L  SLV  Y   G       +FDE S
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPL---LIDSLVDNYFRHGDQHGAVKVFDENS 120

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT--DLAWRKL 129
            RS F +N ++ ++    ++     +F  ML  G   P+ YT+  V+KAC   D+A+  +
Sbjct: 121 NRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEG-ITPNGYTFAGVLKACVGGDIAFNYV 179

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
              +H R    GFD    V N LI +Y   G +++A+KVF+ +    +V+W  +ISG  +
Sbjct: 180 K-QVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQ 238

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N   +EA+++F  M  S + P    + SVL A   ++  E+G  +H LV           
Sbjct: 239 NGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYV 298

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
            N LV +Y +   +  A  +F  M+ RD V++ S+I+G    G    AL LF  MQ + +
Sbjct: 299 CNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCL 358

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
           +P+ +T+ SLLSAC+S+  L +G  LH+  IK  +  ++I+E +L+D+Y+KC  V+ + +
Sbjct: 359 KPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHK 418

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
            F  T  +  V WN +L           + E+FRQM +E + PN  T  S+L     L  
Sbjct: 419 FFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGA 478

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L     IH ++I+ GF   V V + LID+Y+K G L  A +I   +P  + D+V W+ +I
Sbjct: 479 LYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP--EDDVVSWTAMI 536

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           AGY  H     A+ LF+EM   G+Q + + F SA+ AC+    L +G  +     +++  
Sbjct: 537 AGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIH---AQSYAA 593

Query: 550 CSRADHY--TCIVDLLGRAGRLDEAY 573
              AD      ++ L  R GR+ EAY
Sbjct: 594 GFGADLSINNALISLYARCGRIQEAY 619



 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 152/571 (26%), Positives = 284/571 (49%), Gaps = 9/571 (1%)

Query: 33  KQLHA----FIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           KQ+H+    +   S PL  +L   L    G++ + + +F+ +  +    +  ++   +QN
Sbjct: 180 KQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQN 239

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   +++ +F  M    E  P  Y    V+ A T +   +LG  LH  V+  GF  +T+V
Sbjct: 240 GLEEEAILLFCDM-HASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYV 298

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+A+Y    ++ +A ++F  M     VS+N+LISG  +  ++  AL +F  M +  +
Sbjct: 299 CNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCL 358

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +PDC +V S+L AC  +  +  G  +H       +  +I    +L+D+Y KC  V  A  
Sbjct: 359 KPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHK 418

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
            F      ++V W  M+  Y    ++ ++  +F+ MQ EG+ PN  T  S+L  C+SL  
Sbjct: 419 FFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGA 478

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L  G  +H   IK   +  V V + LIDMYAK   + L+ ++  R  +   V W A++AG
Sbjct: 479 LYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAG 538

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            V + +  +A++LF +M    ++ ++    S + A A +  L+Q   IH      GF + 
Sbjct: 539 YVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGAD 598

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           + ++  LI +Y++CG ++ A+  F +I   DK+ + W+ +++G    G+ E A+ +F  M
Sbjct: 599 LSINNALISLYARCGRIQEAYLAFEKIG--DKNNISWNSLVSGLAQSGYFEEALQVFVRM 656

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
           +++  + N  T+ SA+ A +    + +G  + + +L+      R +    ++ L  ++G 
Sbjct: 657 LRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSER-EVSNSLISLYAKSGS 715

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           + +A+     M  +   + W A++     HG
Sbjct: 716 ISDAWREFNDMSERNVIS-WNAMITGYSQHG 745



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 132/469 (28%), Positives = 237/469 (50%), Gaps = 9/469 (1%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           LH R+  +GFD +  + + L+  Y   G+   A KVFD     SV SWN +I  +     
Sbjct: 80  LHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKS 139

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPAC-GYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
             +   +F  ML  G+ P+  +   VL AC G        + +H          +    N
Sbjct: 140 NFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVAN 199

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            L+D+Y K G +  A+ VF+ +  +D+VTW +MI+G + NG    A+ LF  M    + P
Sbjct: 200 LLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFP 259

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
               + S+LSA + +   + G  LH   IK     E  V   L+ +Y++   +  + ++F
Sbjct: 260 TPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIF 319

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
           +  + +  V +N++++G V  G + +A+ELF +M  + ++P+  T+ SLL A A +  L 
Sbjct: 320 STMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALH 379

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           + M +H + I+ G  + + +   L+D+YSKC  +E+AHK F  +  + ++IV+W+V++  
Sbjct: 380 KGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFF--LTTETENIVLWNVMLVA 437

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           YG   +   +  +F++M   G+ PN+ T+ S L  C+  G L  G  +   ++   +T  
Sbjct: 438 YGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVI---KTGF 494

Query: 552 RADHYTC--IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
           + + Y C  ++D+  + G+L  A  ++R +P       W A++   V H
Sbjct: 495 QLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDV-VSWTAMIAGYVQH 542



 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 133/489 (27%), Positives = 249/489 (50%), Gaps = 7/489 (1%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNVRI---LFDEMS 71
           V  L+   A+  ++    QLH+  I +G      L  SL+  Y   ++V      F    
Sbjct: 365 VASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTE 424

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
             +  L+N ++  Y Q     DS ++F  M   G   P+ +TYP +++ CT L    LG 
Sbjct: 425 TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMI-PNQFTYPSILRTCTSLGALYLGE 483

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H  V+ TGF ++ +V + LI MY  +G++  A ++   + E  VVSW  +I+GY ++ 
Sbjct: 484 QIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHD 543

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
              EAL +F+ M   G++ D     S + AC  ++ +  G+ IH        G +++  N
Sbjct: 544 MFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINN 603

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           AL+ +Y +CG + EA L F+++ +++ ++W S+++G A +G    AL +F  M       
Sbjct: 604 ALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEV 663

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           N  T GS +SA +SL  +K+G+ +H+  +K   + E  V  +LI +YAK   +  +++ F
Sbjct: 664 NMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREF 723

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
              S++  + WNA++ G   +G   +A+ LF +M V  + PN  T   +L A + +  ++
Sbjct: 724 NDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVK 783

Query: 432 QAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
           + ++    + + +  +   E    ++D+  + G L+ A +   E+PI   D ++W  +++
Sbjct: 784 EGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIP-ADAMIWRTLLS 842

Query: 491 GYGMHGHGE 499
              +H + E
Sbjct: 843 ACVIHKNIE 851



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 129/286 (45%), Gaps = 10/286 (3%)

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + L   M+  GVR N      LL  C +   L     LH    K   + E ++  +L+D 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y +      + +VF   S +    WN ++   V      +   LFR+ML E + PN  T 
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 418 NSLLPAYAILADL--QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
             +L A  +  D+       +H     YGF S   V+  LID+YSK G +ESA K+F+ I
Sbjct: 163 AGVLKA-CVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCI 221

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
            +  KDIV W  +I+G   +G  E A+ LF +M  S + P     +S L A +   L + 
Sbjct: 222 CM--KDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFEL 279

Query: 536 GLDLFNFMLENHQTCSRADHYTC--IVDLLGRAGRLDEAYDLIRTM 579
           G  L   ++   +    ++ Y C  +V L  R+ +L  A  +  TM
Sbjct: 280 GEQLHCLVI---KWGFHSETYVCNGLVALYSRSRKLISAERIFSTM 322



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 98/248 (39%), Gaps = 26/248 (10%)

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLI 456
           K ++L   M    V  N      LL        L + M +HC + + GF     +   L+
Sbjct: 41  KRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLV 100

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
           D Y + G    A K+F E    ++ +  W+ +I  +           LF+ M+  G+ PN
Sbjct: 101 DNYFRHGDQHGAVKVFDENS--NRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPN 158

Query: 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY---------TCIVDLLGRAG 567
             TF   L AC  G +       FN++ + H   SR  +Y           ++DL  + G
Sbjct: 159 GYTFAGVLKACVGGDI------AFNYVKQVH---SRTFYYGFDSSPLVANLLIDLYSKNG 209

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLL 625
            ++ A  +   + +K     W A++     +G   L E A     ++      P  YVL 
Sbjct: 210 YIESAKKVFNCICMKDI-VTWVAMISGLSQNG---LEEEAILLFCDMHASEIFPTPYVLS 265

Query: 626 SKLYSAVR 633
           S L ++ +
Sbjct: 266 SVLSASTK 273


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 239/676 (35%), Positives = 365/676 (53%), Gaps = 43/676 (6%)

Query: 24  AATKSIAGT------KQLHAFIITSG-PLFTH--LRSSLVRAYGH---VSNVRILFDEMS 71
           A  K++AG       KQ+HA +   G   F+   + ++LV  YG    + +   +FD ++
Sbjct: 15  AVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRIT 74

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK--- 128
           ER    +N+++    +      ++K F  ML  G + P ++T   +  AC++L  R    
Sbjct: 75  ERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEG-FEPSSFTLVSMALACSNLRKRDGLW 133

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
           LG  +HG     G    TF  N L+AMY   G +  A+ +     +  +V+WN++IS + 
Sbjct: 134 LGKQIHGCCFRKGH-WRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFS 192

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-VAGGRLGKNI 247
           +N    EAL+    M+  GV+PD  +  SVLPAC +L  +  G+ IH   +    + +N 
Sbjct: 193 QNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENS 252

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
              +ALVDMY  CG V   RLVFD + +R +  W +MI GYA +     AL LF  M+  
Sbjct: 253 FVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAA 312

Query: 308 -GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
            G+  N+ T+ S++ A      + R   +H + IK+ LE    ++ ALIDMY++   +K 
Sbjct: 313 AGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKT 372

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML-VE---------------VV 410
           S ++F     +  V WN I+   V  G +  A+ L  +M  +E                 
Sbjct: 373 SKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPF 432

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           +PN  TL ++LP  A L+ L +   IH Y IR    S V V + L+D+Y+KCG L  A +
Sbjct: 433 KPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARR 492

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG-----VQPNEVTFTSALH 525
           +F ++PI++  ++ W+VII  YGMHG G+ ++ LF++MV  G     V+P EVTF +   
Sbjct: 493 VFDQMPIRN--VITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFA 550

Query: 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           +CSH G++DEGL LF+ M   H      DHY CIVDL+GRAG+++EAY L+ TMP     
Sbjct: 551 SCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDK 610

Query: 586 -AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
              W +LLGAC I+ N+E+GE+AA+ L +L+P+   +YVLLS +YS+   W  A N+R  
Sbjct: 611 VGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRR 670

Query: 645 MDEKGLRKAPAHSLIE 660
           M   G++K P  S IE
Sbjct: 671 MKAMGVKKEPGCSWIE 686



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 157/518 (30%), Positives = 260/518 (50%), Gaps = 30/518 (5%)

Query: 107 YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD--MDTFVGNCLIAMYMNFGEVKA 164
           ++PDN+ +P V+KA   +    LG  +H  V   G+       + N L+ MY   G +  
Sbjct: 6   FSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGD 65

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
           A KVFD + E   VSWN++IS   +    + A+  F  ML  G EP   ++VS+  AC  
Sbjct: 66  AYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSN 125

Query: 225 LKEIE---MGRMIHELVAGGRLGK-NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT 280
           L++ +   +G+ IH      R G     + NAL+ MY K G +++A+ +     +RD+VT
Sbjct: 126 LRKRDGLWLGKQIHGCCF--RKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVT 183

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           W SMI+ ++ N     AL   +LM  EGV+P+ +T  S+L ACS L  L+ G+ +HA+ +
Sbjct: 184 WNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYAL 243

Query: 341 KQNLECE-VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAV 399
           + +   E   V +AL+DMY  C  V+    VF     +K   WNA++AG   +    KA+
Sbjct: 244 RTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKAL 303

Query: 400 ELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
            LF +M     +  N  T++S++PAY     + +   IH Y+I+ G  +   +   LID+
Sbjct: 304 MLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDM 363

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV--------- 509
           YS+ G ++++ +IF    ++D+DIV W+ II  Y + G    A+ L  EM          
Sbjct: 364 YSRMGDIKTSKRIFD--SMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYD 421

Query: 510 -------QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDL 562
                  Q   +PN +T  + L  C+    L +G ++  + + N    S+    + +VD+
Sbjct: 422 GDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRN-LLASQVTVGSALVDM 480

Query: 563 LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             + G L+ A  +   MP++     W  ++ A  +HG 
Sbjct: 481 YAKCGCLNLARRVFDQMPIRNV-ITWNVIIMAYGMHGK 517



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 124/417 (29%), Positives = 203/417 (48%), Gaps = 38/417 (9%)

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG--KNIAAWNALVDMYVKC 260
           M+ SG  PD  +  +VL A   ++E+ +G+ IH  V     G   ++   N LV+MY KC
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           G + +A  VFDR++ERD V+W S+I+      +   A+  F+LM  EG  P+S T+ S+ 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 321 SACSSLYY---LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
            ACS+L     L  G+ +H    ++          AL+ MYAK   +  +  +      +
Sbjct: 121 LACSNLRKRDGLWLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDR 179

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V WN++++    N    +A+   R M++E V+P+  T  S+LPA + L  L+    IH
Sbjct: 180 DLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIH 239

Query: 438 CYLIRYGFLSVVE---VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            Y +R     V+E   V + L+D+Y  CG +ES   +F  +   D+ I +W+ +IAGY  
Sbjct: 240 AYALRTD--DVIENSFVGSALVDMYCNCGQVESGRLVFDSVL--DRKIGLWNAMIAGYAQ 295

Query: 495 HGHGETAVSLFKEM-VQSGVQPNEVTFTSALHA---CS--------HGGLLDEGLDLFNF 542
             H E A+ LF EM   +G+  N  T +S + A   C         HG ++  GL+  N 
Sbjct: 296 SEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLET-NR 354

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            L+N            ++D+  R G +  +  +  +M  +     W  ++ + VI G
Sbjct: 355 YLQN-----------ALIDMYSRMGDIKTSKRIFDSMEDRDI-VSWNTIITSYVICG 399


>gi|413923618|gb|AFW63550.1| hypothetical protein ZEAMMB73_399779 [Zea mays]
          Length = 1118

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/653 (34%), Positives = 363/653 (55%), Gaps = 17/653 (2%)

Query: 18   KLVQQYAATKSIAGTKQLHAFIITSGPLFT--HLRSSLVRAYGHVSNVRILFDEMSERSS 75
            KL++  AAT +      LHA I+ SG L +  HL + ++  Y      R LFDE+   + 
Sbjct: 476  KLLEAAAATSTPLAAAHLHANILRSGLLHSSHHLTAHVLACYP-PGLARDLFDEIRSPTP 534

Query: 76   FLYNTVMKMYAQNGASHDSLKMFLGMLRLGE---YNPDNYTYPIVIKACTDLAWRKLGIA 132
             L N +++       +H   + +   + LG+      D +T  ++++ACT L     G A
Sbjct: 535  RLANALLR-------AHIRARQWRAAILLGQRLRVRRDGFTLSLLLRACTALPSLTHGRA 587

Query: 133  LHGRVLIT-GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H   + +     D FV   ++ MY   G++  A   +  + +  +V   ++++GY +N 
Sbjct: 588  VHAAAVRSCTASEDAFVATAIVQMYSRCGDMAGAINAYGMLEKPDIVLRTSVVTGYEQNG 647

Query: 192  YAKEALVVFDW-MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
             A+EAL  F   ++  GV     ++VSV+ A   L  +  G+  H  V    L  ++A  
Sbjct: 648  MAEEALEFFARNVVGQGVLVTPVTLVSVMSAAAQLGHVRKGQACHAYVVRNSLSYDLALV 707

Query: 251  NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
            NA++  YVK G +  +  +F+ M++RDV+TW+ MI GY  +GD      +++ M    V+
Sbjct: 708  NAVLGFYVKIGDLQASMRLFEGMTDRDVITWSCMIKGYVQHGDAHTGFRMYREMVKARVQ 767

Query: 311  PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
            PNS+T+ S+L AC+ +   + G+ LH   +    E E+ V TAL+DMY KC+  + + ++
Sbjct: 768  PNSVTLVSVLQACALVVDAEEGKRLHRVAVSIGCELELGVATALVDMYMKCSCHEEAMRL 827

Query: 371  FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
            F R  KK  V W A++ G   N L  +++  F+ ML+    P+  T+  +L A +     
Sbjct: 828  FHRMPKKDVVAWAAVIGGLTQNELPGESLHSFKCMLLNDHVPDAVTMVKVLAACSEFGGN 887

Query: 431  QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
            + A+ +H YL+R GF +   V+  L+D+YSKCG L+SA ++F      +KDIVVW  +IA
Sbjct: 888  RLAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDLDSAVRVFEGT--TEKDIVVWGSMIA 945

Query: 491  GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
            GYG HG G+ AV+L++ M+ S +QPN VTF S L ACSH GL+ EG+ +F+ M +     
Sbjct: 946  GYGAHGLGQEAVALYQRMIASSIQPNNVTFLSVLSACSHSGLVQEGIQIFDSMTQVFGVV 1005

Query: 551  SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
              A+H + +VDLLGRAG L EA  +IR M  +     W ALL AC  H N ++ EVAAK 
Sbjct: 1006 PNAEHQSAMVDLLGRAGELQEAIRVIRDMDGRAVAHTWCALLAACRKHNNTKMSEVAAKN 1065

Query: 611  LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            L +L+P++ G Y LL+ LY+   +W++ ++ RD++  + LRK   +S +EV N
Sbjct: 1066 LLKLDPDHVGYYNLLTNLYAFDEKWENVKDTRDMVKGRDLRKVAGYSSVEVTN 1118


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/601 (34%), Positives = 344/601 (57%), Gaps = 6/601 (0%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LFDE  ++     N ++  +++N  + ++L +FLG+ R G    D  +   V+K C  L 
Sbjct: 48  LFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGS-PTDGSSLSCVLKVCGCLF 106

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
            R +G  +H + +  GF  D  VG  L+ MYM    V+   +VFD M   +VVSW +L++
Sbjct: 107 DRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLA 166

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY +N   ++AL +F  M   G++P+  +  +VL        +E G  +H +V    L  
Sbjct: 167 GYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDS 226

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
            I   N++V+MY K   V++A+ VFD M  R+ V+W SMI G+  NG    A  LF  M+
Sbjct: 227 TIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMR 286

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            EGV+       +++  C+++  +   + LH   IK   + ++ ++TAL+  Y+KC+ + 
Sbjct: 287 LEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEID 346

Query: 366 LSFQVFARTSK-KKTVPWNAILAGCVHNGLARKAVELFRQMLVEV-VEPNDATLNSLLPA 423
            +F++F      +  V W AI++G V NG   +A+ LF QM  E  VEPN+ T +S+L A
Sbjct: 347 DAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNA 406

Query: 424 YAI-LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
            A   A ++Q    H   I+ GF + + VS+ L+ +Y+K G++ESA+++F      D+D+
Sbjct: 407 CAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQV--DRDL 464

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
           V W+ +I+GY  HG G+ ++ +F+EM    ++ + +TF   + AC+H GL++EG   F+ 
Sbjct: 465 VSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDL 524

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           M++++      +HY+C+VDL  RAG L++A DLI  MP      +W  LL AC +H NV+
Sbjct: 525 MVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQ 584

Query: 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           LGE+AA+ L  L+P++   YVLLS +Y+    W++   VR +MD K ++K   +S IEV+
Sbjct: 585 LGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVK 644

Query: 663 N 663
           N
Sbjct: 645 N 645


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 243/684 (35%), Positives = 365/684 (53%), Gaps = 47/684 (6%)

Query: 20  VQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSF 76
           ++   A +SI G    H  +    P  ++   +L+ AY   G ++    LFD M  R + 
Sbjct: 70  LRSLTAVRSIHGAALRHDLLDGPTPAVSN---ALLTAYARCGDLTAALALFDAMPSRDAV 126

Query: 77  LYNTVMK---MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR-KLGIA 132
            +N+++    ++ +   + D+L+  L    L  +   ++T   V+ AC+ LA   +LG  
Sbjct: 127 TFNSLIAALCLFRRWLPALDALRDML----LEGHPLTSFTLVSVLLACSHLAEDLRLGRE 182

Query: 133 LHGRVLITGF-DMDT-FVGNCLIAMYMNFGEVKAARKVFDAMWEHSV-----VSWNTLIS 185
            H   L  GF D D  F  N L++MY   G V  A+ +F ++    V     V+WNT++S
Sbjct: 183 AHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVS 242

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV-AGGRLG 244
              ++    EA+ V   M+  GV PD  +  S LPAC  L+ + +GR +H  V     L 
Sbjct: 243 LLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAYVLKDADLA 302

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRM--SERDVVTWTSMINGYALNGDVRNALGLFQ 302
            N    +ALVDMY     V  ARLVFD +   ER +  W +MI GYA  G   +AL LF 
Sbjct: 303 ANSFVASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAMICGYAQAGLDEDALELFA 362

Query: 303 LMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
            M+ E GV P+  TI  +L +C+         ++H + +K+ +     V+ AL+D+YA+ 
Sbjct: 363 RMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYVVKRGMADNPFVQNALMDLYARL 422

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV-------------- 407
             +  +  +FA    +  V WN ++ GCV  G  R A +L R+M                
Sbjct: 423 GDMDAARWIFATIEPRDVVSWNTLITGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIA 482

Query: 408 ----EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
               E V PN+ TL +LLP  A+LA   +   IH Y +R+   S V V + L+D+Y+KCG
Sbjct: 483 GADEEPVVPNNITLMTLLPGCAMLAAPARGKEIHGYAVRHALDSDVAVGSALVDMYAKCG 542

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG-VQPNEVTFTS 522
            L  +  +F  +P   ++++ W+V+I  YGMHG G+ A++LF  MV S   +PNEVTF +
Sbjct: 543 CLALSRAVFDRLP--RRNVITWNVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIA 600

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PL 581
           AL ACSH G++D GL++F  M  NH      D + C VD+LGRAGRLDEAY +I +M P 
Sbjct: 601 ALAACSHSGMVDRGLEMFRSMKRNHGVEPTPDLHACAVDILGRAGRLDEAYRIISSMEPG 660

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENV 641
           +   + W + LGAC +H NV LGE+AA+ LFELEP+   +YVLL  +YSA   W+ +  V
Sbjct: 661 EQQVSAWSSFLGACRLHRNVALGEIAAERLFELEPDEASHYVLLCNIYSAAGLWEKSSEV 720

Query: 642 RDVMDEKGLRKAPAHSLIEVRNIL 665
           R  M ++G+ K P  S IE+  ++
Sbjct: 721 RSRMRQRGVSKEPGCSWIELDGVI 744


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/602 (34%), Positives = 345/602 (57%), Gaps = 8/602 (1%)

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYT---YPIVIKA 120
           R +FD M++ ++F++N +++ Y+   A  D+L +F  M R G  +PDNYT         A
Sbjct: 72  RKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRG-VSPDNYTMAAVVSASAA 130

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
              L WR  G A+H  V   GF  D FV + L+  Y  F  V+ A KVF+ M+E  VVSW
Sbjct: 131 FAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSW 190

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
            ++IS   +  +  + L +   M   G+ P+  +++S+L ACG  + ++ GR ++  V  
Sbjct: 191 TSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGK 250

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
             +  ++   NAL+ MY KCG +++A   F  M  R   +W ++I+G+  N + + AL +
Sbjct: 251 FGIEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRI 310

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
           F+ M   GV P+ +T+ S+LSAC+ L  L++G  +H++     + C+ I+  +LI+MYAK
Sbjct: 311 FEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAK 370

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           C  +  + +VF   +KK  V W  ++ G V       A  LF +M +  V  ++  L SL
Sbjct: 371 CGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSL 430

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L A + L  L +   IH Y+        + + + L+D+Y+KCG +++A +IF +  ++ K
Sbjct: 431 LSACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRK--MQHK 488

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQ-SGVQPNEVTFTSALHACSHGGLLDEGLDL 539
             + W+ +I G   +G+G+ AV LF +M++    +P+ +T  + L AC+H G++DEGL  
Sbjct: 489 QTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRY 548

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           F +++ +       +HY CIVDLLGRAG LDEA+  I+ MP++P   +WG+LL AC +H 
Sbjct: 549 F-YLMSSLGVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVHH 607

Query: 600 NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
            ++LG+V  + +  + P + G +VL+S L++   +W D E+VR +M  +G+ K P HS +
Sbjct: 608 RMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIEKTPGHSSV 667

Query: 660 EV 661
           +V
Sbjct: 668 QV 669



 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 167/503 (33%), Positives = 262/503 (52%), Gaps = 12/503 (2%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFG---EVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           LHGR++      D+FV   LIA+  +     +++ ARKVFD M + +   WN +I GY  
Sbjct: 36  LHGRLVRAHLTSDSFVAGRLIALLASPAARHDMRYARKVFDGMAQPNAFVWNCMIRGYSS 95

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY---LKEIEMGRMIHELVAGGRLGKN 246
               ++AL VF  M + GV PD  ++ +V+ A      LK    G  IH LV       +
Sbjct: 96  CEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAAFAGLKWRSNGDAIHALVRRIGFTSD 155

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           +   + LV+ Y    SV EA  VF+ M ERDVV+WTSMI+  A  G     L +   MQ 
Sbjct: 156 VFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQA 215

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
           EG+ PN +TI SLLSAC     +  GR ++    K  +E +V +  ALI MY KC  +  
Sbjct: 216 EGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSD 275

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           + + F     + T  WN ++ G V N   ++A+ +F +ML+  V P+  TL S+L A A 
Sbjct: 276 ALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQ 335

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           L +L++ M++H Y+   G      ++  LI++Y+KCG + +A ++F    +  KD+V W+
Sbjct: 336 LGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQ--TMTKKDVVSWT 393

Query: 487 VIIAGYGMHGHGET-AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           V++ GY + GH  T A +LF+EM  + V  +E+   S L ACS  G LD+G ++ ++ +E
Sbjct: 394 VMVCGY-VKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSY-IE 451

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
                      + +VD+  + G +D A ++ R M  K T + W A++G    +G  +   
Sbjct: 452 EMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLS-WNAMIGGLASNGYGKEAV 510

Query: 606 VAAKWLFELEPENPGNYVLLSKL 628
                + EL+   P    L + L
Sbjct: 511 ELFDQMLELQDPKPDGITLKAVL 533



 Score =  244 bits (624), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 156/483 (32%), Positives = 250/483 (51%), Gaps = 11/483 (2%)

Query: 51  SSLVRAYG---HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           S LV  YG    V     +F+EM ER    + +++   AQ G     LKM   M   G  
Sbjct: 160 SGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSEMQAEG-I 218

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            P+  T   ++ AC        G  ++ +V   G + D  + N LI+MY   G +  A +
Sbjct: 219 IPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGCLSDALE 278

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
            F AM      SWNTLI G+ +N   KEAL +F+ ML  GV PD  ++VSVL AC  L E
Sbjct: 279 AFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSACAQLGE 338

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +  G  +H  +    +  +    N+L++MY KCG +  A  VF  M+++DVV+WT M+ G
Sbjct: 339 LRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSWTVMVCG 398

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y        A  LF+ M+   V  + + + SLLSACS L  L +GR +H++  + N+  +
Sbjct: 399 YVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEEMNVAKD 458

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML- 406
           + +E+AL+DMYAKC  +  + ++F +   K+T+ WNA++ G   NG  ++AVELF QML 
Sbjct: 459 LCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVELFDQMLE 518

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
           ++  +P+  TL ++L A A +  + + +     +   G +   E    ++D+  + G L+
Sbjct: 519 LQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGVVPDTEHYGCIVDLLGRAGMLD 578

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV---TFTSA 523
            A     ++PI + + V+W  ++A   +H   +    + + +V   V PN+V      S 
Sbjct: 579 EAFHFIKKMPI-EPNPVIWGSLLAACRVHHRMDLGKVIGQHIVN--VAPNDVGVHVLVSN 635

Query: 524 LHA 526
           LHA
Sbjct: 636 LHA 638



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 196/383 (51%), Gaps = 18/383 (4%)

Query: 49  LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           +R++L+  Y   G +S+    F  M  R +  +NT++  + QN    ++L++F  ML  G
Sbjct: 259 IRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHG 318

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
              PD  T   V+ AC  L   + G+ +H  +   G   D  + N LI MY   G++ AA
Sbjct: 319 -VTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAA 377

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
            +VF  M +  VVSW  ++ GY K      A  +F+ M  + V     ++VS+L AC  L
Sbjct: 378 ERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQL 437

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
             ++ GR IH  +    + K++   +ALVDMY KCG ++ A  +F +M  +  ++W +MI
Sbjct: 438 GALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMI 497

Query: 286 NGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
            G A NG  + A+ LF Q+++ +  +P+ +T+ ++L AC+ +  +  G  L  + +  +L
Sbjct: 498 GGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEG--LRYFYLMSSL 555

Query: 345 ECEVIVET----ALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGC-VHNGLARKA 398
              V+ +T     ++D+  +  ++  +F    +   +   V W ++LA C VH+ +    
Sbjct: 556 --GVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRVHHRMDLGK 613

Query: 399 VELFRQMLVEVVEPNDATLNSLL 421
           V    Q +V V  PND  ++ L+
Sbjct: 614 V--IGQHIVNVA-PNDVGVHVLV 633


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 223/665 (33%), Positives = 369/665 (55%), Gaps = 12/665 (1%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAYG---HVSNVRI 65
           P+   L+  L++     K+I   + LHA I+ +G + + ++ ++ +  Y    H+S+   
Sbjct: 9   PQHRQLLQDLIE-CTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALT 67

Query: 66  LFDEMSE--RSSFLYNTVMKMYAQNGASHD---SLKMFLGMLRLGEYNPDNYTYPIVIKA 120
           LFD +++  +    +N+++  ++QN +S     ++ +F  M+R     P+ +T   V  A
Sbjct: 68  LFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSA 127

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
            ++L+    G   H   + TG   D +VG+ L+ MY   G V  ARK+FD M E + VSW
Sbjct: 128 ASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSW 187

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
            T+ISGY  +  A +A+ VF+ M +     +  ++ SVL A      +  GR +H L   
Sbjct: 188 ATMISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIK 247

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
             L   ++  NALV MY KCGS+++A   F+   +++ +TW++M+ GYA  GD   AL L
Sbjct: 248 NGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKL 307

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
           F  M   GV P+  T+  +++ACS L  +  G+ +H++  K     ++ V +A++DMYAK
Sbjct: 308 FNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAK 367

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           C  +  + + F    +   V W +I+ G V NG     + L+ +M +E V PN+ T+ S+
Sbjct: 368 CGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASV 427

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L A + LA L Q   +H  +I+YGF   V + + L  +Y+KCGSL+  + IF  +P   +
Sbjct: 428 LRACSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMP--SR 485

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
           D++ W+ +I+G   +GHG  A+ LF++M+  G++P+ VTF + L ACSH GL+D G + F
Sbjct: 486 DVISWNAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEYF 545

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             M +        +HY C+VD+L RAG+L+EA + I +  +     +W  LLGAC  H N
Sbjct: 546 KMMFDEFNIAPMVEHYACMVDILSRAGKLNEAKEFIESATVDHGLCLWRILLGACKNHRN 605

Query: 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
            ELG  A + L EL       YVLLS +Y+A+   ++ E VR +M  +G+ K P  S IE
Sbjct: 606 YELGVYAGEKLVELGSPESSAYVLLSSIYTALGDRENVERVRRIMKARGVNKEPGCSWIE 665

Query: 661 VRNIL 665
           ++ ++
Sbjct: 666 LKGLV 670


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/598 (34%), Positives = 331/598 (55%), Gaps = 3/598 (0%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
            F  M E++   ++ ++    QN      L++F  M + G       T+  V ++C  L+
Sbjct: 231 FFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAG-VGVSQSTFASVFRSCAGLS 289

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             +LG  LHG  L T F  D  +G   + MYM    +  A+K+F+++  H++ S+N +I 
Sbjct: 290 ALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIV 349

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY ++    EAL +F  + KSG+  D  S+     AC  +K    G  +H L        
Sbjct: 350 GYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQS 409

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           NI   NA++DMY KCG++ EA LVF+ M  RD V+W ++I  +  NG+    L LF  M 
Sbjct: 410 NICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWML 469

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
             G+ P+  T GS+L AC+    L  G  +H   IK  L  +  V  ALIDMY+KC +++
Sbjct: 470 QSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMME 529

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + ++  R +++  V WNAI++G      + +A + F +ML   V+P++ T  ++L   A
Sbjct: 530 KAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCA 589

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            L  ++    IH  +I+    S   +S+ L+D+YSKCG+++    IF + P  ++D V W
Sbjct: 590 NLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP--NRDFVTW 647

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + ++ GY  HG GE A+ +F+ M    V+PN  TF + L AC H GL+++GL  F+ ML 
Sbjct: 648 NAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLS 707

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
           N+    + +HY+C+VD++GR+G++ +A +LI  MP +    +W  LL  C IHGNVE+ E
Sbjct: 708 NYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAE 767

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            AA  + +LEPE+   YVLLS +Y+    W +   +R +M   GL+K P  S IE+++
Sbjct: 768 KAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKS 825



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 168/578 (29%), Positives = 292/578 (50%), Gaps = 20/578 (3%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +   + LFD M ER    +N+++  Y  NG     + +FL M R+G    D  T+ +V
Sbjct: 122 GDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVF-DRTTFAVV 180

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +K+C+ L     GI +HG  +  GFD D   G+ L+ MY    ++  + + F +M E + 
Sbjct: 181 LKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNW 240

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSW+ +I+G  +N   +  L +F  M K+GV    ++  SV  +C  L  + +G  +H  
Sbjct: 241 VSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGH 300

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                 G ++    A +DMY+KC ++++A+ +F+ +   ++ ++ ++I GYA +     A
Sbjct: 301 ALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEA 360

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           LG+F+L+Q  G+  + +++     AC+ +     G  +H  ++K   +  + V  A++DM
Sbjct: 361 LGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDM 420

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y KC  +  +  VF     +  V WNAI+A    NG   K + LF  ML   +EP++ T 
Sbjct: 421 YGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTY 480

Query: 418 NSLLPAYAILADLQQAMNIHCYLI--RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
            S+L A A    L   M IH  +I  R G  S V ++  LID+YSKCG +E A K+   +
Sbjct: 481 GSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIA--LIDMYSKCGMMEKAEKLHDRL 538

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
              ++ +V W+ II+G+ +    E A   F +M++ GV P+  T+ + L  C++   ++ 
Sbjct: 539 A--EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVEL 596

Query: 536 GLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
           G  +   +++      ++D Y  + +VD+  + G + + + LI           W A++ 
Sbjct: 597 GKQIHAQIIKKEL---QSDAYISSTLVDMYSKCGNMQD-FQLIFEKAPNRDFVTWNAMVC 652

Query: 594 ACVIHGNVELGEVAAKWLFE---LEPENPGNYVLLSKL 628
               HG   LGE A K +FE   LE   P +   L+ L
Sbjct: 653 GYAQHG---LGEEALK-IFEYMQLENVKPNHATFLAVL 686



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 151/541 (27%), Positives = 266/541 (49%), Gaps = 41/541 (7%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNF------------- 159
           T+  + + C+D      G   H R+++T F    FV NCLI MY+               
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 160 ------------------GEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
                             G++  A+K+FDAM E  VVSWN+LISGY  N   ++ + VF 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
            M + G   D  +   VL +C  L++   G  IH L        ++   +AL+DMY KC 
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
            ++ +   F  M E++ V+W+++I G   N D+R  L LF+ MQ  GV  +  T  S+  
Sbjct: 224 KLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFR 283

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
           +C+ L  L+ G  LH   +K +   +V++ TA +DMY KCN +  + ++F          
Sbjct: 284 SCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQS 343

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           +NAI+ G   +    +A+ +FR +    +  ++ +L+    A A++    + + +H   +
Sbjct: 344 YNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSM 403

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           +    S + V+  ++D+Y KCG+L  A  +F E+    +D V W+ IIA +  +G+ E  
Sbjct: 404 KSLCQSNICVANAILDMYGKCGALVEACLVFEEMV--SRDAVSWNAIIAAHEQNGNEEKT 461

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI-- 559
           +SLF  M+QSG++P+E T+ S L AC+    L+ G+++ N ++++       D +  I  
Sbjct: 462 LSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLG---LDSFVGIAL 518

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL--EPE 617
           +D+  + G +++A  L   +  + T   W A++    +    E  +     + E+  +P+
Sbjct: 519 IDMYSKCGMMEKAEKLHDRLA-EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPD 577

Query: 618 N 618
           N
Sbjct: 578 N 578


>gi|225428280|ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Vitis vinifera]
          Length = 742

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/663 (34%), Positives = 366/663 (55%), Gaps = 15/663 (2%)

Query: 8   TLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNV 63
           T P   H ++K      ++  +   K +HA ++  G    T   +S++  Y   G + + 
Sbjct: 48  TDPTLVHSILKAC----SSLPVRHGKSIHASLLKQGFDSLTSTGNSVLDFYMKTGALDSA 103

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
             +FD M  R S  +N ++  +   GAS   L  F    R+  + P+  T  + I AC  
Sbjct: 104 LFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFR-QARVIAFEPNVSTLVLAIHACRS 162

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
           L   + G+ +HG ++ +GF     V N L++MY +  +++ A ++FD M E  V+SW+ +
Sbjct: 163 LGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEELFDEMCERDVISWSVM 221

Query: 184 ISGYFKNAYAKEALVVFDWML-KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           I GY +   AK AL +F  M   + +E D  ++VSVL AC    +I MGR +H +V    
Sbjct: 222 IGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRG 281

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
           L  ++   N+++DMY KC     A   F+ M  R+ V+W S+I+G         AL LF 
Sbjct: 282 LDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFY 341

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            M   G R + +T+ +LL +C       + + +H+  I+   E    V  +LID Y+KC+
Sbjct: 342 SMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCD 401

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
           L++L++++F R   K TV W+A++AG  H G   +A+ LF++M     +PN  T+ SLL 
Sbjct: 402 LIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLE 461

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A+++ ADL+++   H   IR G  + V V T ++D+Y+KCG +  + K F +IP  +K+I
Sbjct: 462 AFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIP--EKNI 519

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
           V W  +IA  GM+G    A++L  EM   G++PN VT  S L ACSHGGL++EGL  F  
Sbjct: 520 VSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACSHGGLVEEGLSFFEN 579

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP--LKPTHAVWGALLGACVIHGN 600
           M+++H      +HY+C+VD+L RAG+L+ A +LI  MP  ++    +WGALL AC   GN
Sbjct: 580 MVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPERMRDGAGLWGALLSACRSSGN 639

Query: 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
             LG  AA  + ELEP++   Y L S +Y+A   W DA  +R ++  +G+R    +SL+ 
Sbjct: 640 SRLGAGAAFRVLELEPQSSAGYFLASSMYAASGLWADAARMRWLVKARGVRVVAGYSLVH 699

Query: 661 VRN 663
           V +
Sbjct: 700 VED 702


>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 764

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/637 (33%), Positives = 352/637 (55%), Gaps = 10/637 (1%)

Query: 35  LHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           LH  I+ SG  L  ++ SSL+  Y   G     R +FD M ER+   + +++  Y++ G 
Sbjct: 91  LHQRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGR 150

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             ++  +F  M R G   P + T   ++   ++LA  +    LHG  ++ GF  D  + N
Sbjct: 151 VPEAFSLFDEMRRQG-IQPSSVTMLSLLFGVSELAHVQ---CLHGSAILYGFMSDINLSN 206

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            +++MY     ++ +RK+FD M +  +VSWN+L+S Y +  Y  E L++   M   G EP
Sbjct: 207 SMLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEP 266

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D  +  SVL       E+++GR +H  +       +     +L+ MY+K G+++ A  +F
Sbjct: 267 DPQTFGSVLSVAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMF 326

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
           +R  ++DVV WT+MI+G   NG    AL +F+ M   GV+ ++ T+ S+++AC+ L    
Sbjct: 327 ERSLDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYN 386

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
            G S+H +  +  L  ++  + +L+ M+AKC  +  S  VF + +K+  V WNA++ G  
Sbjct: 387 LGTSVHGYMFRHELPMDIATQNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYA 446

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
            NG   KA+ LF +M  +   P+  T+ SLL   A    L     IH ++IR G    + 
Sbjct: 447 QNGYVCKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCIL 506

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           V T L+D+Y KCG L+ A + F+++P    D+V WS II GYG HG GETA+  + + ++
Sbjct: 507 VDTSLVDMYCKCGDLDIAQRCFNQMP--SHDLVSWSAIIVGYGYHGKGETALRFYSKFLE 564

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
           SG++PN V F S L +CSH GL+++GL+++  M  +       +H+ C+VDLL RAGR++
Sbjct: 565 SGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTRDFGIAPNLEHHACVVDLLSRAGRVE 624

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630
           EAY+L +     P   V G +L AC  +GN ELG+  A  +  L+P + GN+V L+  Y+
Sbjct: 625 EAYNLYKKKFSDPVLDVLGIILDACRANGNNELGDTIANDILMLKPMDAGNFVQLAHCYA 684

Query: 631 AVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           ++ +W++       M   GL+K P  S I++   +T 
Sbjct: 685 SINKWEEVGEAWTHMRSLGLKKIPGWSFIDIHGTITT 721



 Score =  291 bits (746), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 175/558 (31%), Positives = 293/558 (52%), Gaps = 19/558 (3%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N ++  ++  GA    L  +  ML+      D YT+P ++KAC+ L    LG++LH R+
Sbjct: 37  FNAIINHHSSQGAHRQVLATYASMLKT-HVPSDAYTFPSLLKACSSLNLFSLGLSLHQRI 95

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           L++G  +D ++ + LI  Y  FG    ARKVFD M E +VV W ++I  Y +     EA 
Sbjct: 96  LVSGLSLDAYIASSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAF 155

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
            +FD M + G++P   +++S+L     L  ++    +H          +I   N+++ MY
Sbjct: 156 SLFDEMRRQGIQPSSVTMLSLLFGVSELAHVQ---CLHGSAILYGFMSDINLSNSMLSMY 212

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
            KC ++  +R +FD M +RD+V+W S+++ YA  G +   L L + M+ +G  P+  T G
Sbjct: 213 GKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPDPQTFG 272

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           S+LS  +S   LK GR LH   ++   + +  VET+LI MY K   + ++F++F R+  K
Sbjct: 273 SVLSVAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDK 332

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V W A+++G V NG A KA+ +FRQML   V+ + AT+ S++ A A L       ++H
Sbjct: 333 DVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVH 392

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            Y+ R+     +     L+ +++KCG L+ +  +F +  +  +++V W+ +I GY  +G+
Sbjct: 393 GYMFRHELPMDIATQNSLVTMHAKCGHLDQSSIVFDK--MNKRNLVSWNAMITGYAQNGY 450

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH-QTCSRADHY 556
              A+ LF EM      P+ +T  S L  C+  G L  G  + +F++ N  + C   D  
Sbjct: 451 VCKALFLFNEMRSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVD-- 508

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV--WGALLGACVIHGNVELGEVAAKWL--F 612
           T +VD+  + G LD A      M   P+H +  W A++     HG    GE A ++   F
Sbjct: 509 TSLVDMYCKCGDLDIAQRCFNQM---PSHDLVSWSAIIVGYGYHGK---GETALRFYSKF 562

Query: 613 ELEPENPGNYVLLSKLYS 630
                 P + + LS L S
Sbjct: 563 LESGMKPNHVIFLSVLSS 580



 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 153/484 (31%), Positives = 263/484 (54%), Gaps = 11/484 (2%)

Query: 20  VQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSF 76
           V + A  + + G+  L+ F+        +L +S++  YG   N+   R LFD M +R   
Sbjct: 180 VSELAHVQCLHGSAILYGFMSD-----INLSNSMLSMYGKCRNIEYSRKLFDYMDQRDLV 234

Query: 77  LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGR 136
            +N+++  YAQ G   + L + L  +R+  + PD  T+  V+         KLG  LHG+
Sbjct: 235 SWNSLVSAYAQIGYICEVL-LLLKTMRIQGFEPDPQTFGSVLSVAASRGELKLGRCLHGQ 293

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEA 196
           +L T FD+D  V   LI MY+  G +  A ++F+   +  VV W  +ISG  +N  A +A
Sbjct: 294 ILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFERSLDKDVVLWTAMISGLVQNGSADKA 353

Query: 197 LVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
           L VF  MLK GV+   A++ SV+ AC  L    +G  +H  +    L  +IA  N+LV M
Sbjct: 354 LAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHELPMDIATQNSLVTM 413

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           + KCG ++++ +VFD+M++R++V+W +MI GYA NG V  AL LF  M+ +   P+S+TI
Sbjct: 414 HAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLFNEMRSDHQTPDSITI 473

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
            SLL  C+S   L  G+ +H++ I+  L   ++V+T+L+DMY KC  + ++ + F +   
Sbjct: 474 VSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDIAQRCFNQMPS 533

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
              V W+AI+ G  ++G    A+  + + L   ++PN     S+L + +    ++Q +NI
Sbjct: 534 HDLVSWSAIIVGYGYHGKGETALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNI 593

Query: 437 HCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           +  + R +G    +E    ++D+ S+ G +E A+ ++ +    D  + V  +I+     +
Sbjct: 594 YESMTRDFGIAPNLEHHACVVDLLSRAGRVEEAYNLYKK-KFSDPVLDVLGIILDACRAN 652

Query: 496 GHGE 499
           G+ E
Sbjct: 653 GNNE 656



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 221/428 (51%), Gaps = 11/428 (2%)

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
           ++ S+N +I+ +      ++ L  +  MLK+ V  D  +  S+L AC  L    +G  +H
Sbjct: 33  TINSFNAIINHHSSQGAHRQVLATYASMLKTHVPSDAYTFPSLLKACSSLNLFSLGLSLH 92

Query: 236 E--LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           +  LV+G  L   IA+  +L++ Y K G  + AR VFD M ER+VV WTS+I  Y+  G 
Sbjct: 93  QRILVSGLSLDAYIAS--SLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGR 150

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
           V  A  LF  M+ +G++P+S+T+ SLL   S L +++    LH   I      ++ +  +
Sbjct: 151 VPEAFSLFDEMRRQGIQPSSVTMLSLLFGVSELAHVQ---CLHGSAILYGFMSDINLSNS 207

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           ++ MY KC  ++ S ++F    ++  V WN++++     G   + + L + M ++  EP+
Sbjct: 208 MLSMYGKCRNIEYSRKLFDYMDQRDLVSWNSLVSAYAQIGYICEVLLLLKTMRIQGFEPD 267

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
             T  S+L   A   +L+    +H  ++R  F     V T LI +Y K G+++ A ++F 
Sbjct: 268 PQTFGSVLSVAASRGELKLGRCLHGQILRTCFDLDAHVETSLIVMYLKGGNIDIAFRMFE 327

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
                DKD+V+W+ +I+G   +G  + A+++F++M++ GV+ +  T  S + AC+  G  
Sbjct: 328 R--SLDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSY 385

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
           + G  +  +M  +      A   + +V +  + G LD++  +   M  K     W A++ 
Sbjct: 386 NLGTSVHGYMFRHELPMDIATQNS-LVTMHAKCGHLDQSSIVFDKMN-KRNLVSWNAMIT 443

Query: 594 ACVIHGNV 601
               +G V
Sbjct: 444 GYAQNGYV 451


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/698 (32%), Positives = 373/698 (53%), Gaps = 46/698 (6%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPL-FTHLRSSLVRAYGHVSN 62
           P+    PK + L           K++   KQLH  ++  G      L ++ V+   H S 
Sbjct: 18  PTTTQKPKNSSL--------QTCKTLIELKQLHCNMLKKGVFNINKLIAACVQMGTHESL 69

Query: 63  VRILF----DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
              L     DE ++ S +  NT+++ YA +G   +++ ++L M+ +    PDN+T+P ++
Sbjct: 70  NYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLL 129

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
            AC+ +     G+ +HG V+  G   D FV N LI  Y   G+V   RKVFD M E +VV
Sbjct: 130 SACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVV 189

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           SW +LI+GY     AKEA+ +F  M++ GVEP+  ++V  + AC  LK++E+G+ +  L+
Sbjct: 190 SWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLM 249

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               +  N    NAL+DMY+KCG +   R +FD  S++++V + ++++ Y  +G     L
Sbjct: 250 TELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVL 309

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
            +   M  +G RP+ +T+ S ++AC+ L  L  G+S HA+  +  LE    +  A+IDMY
Sbjct: 310 VVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMY 369

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG------------------------- 393
            KC   + + +VF   S K  V WN+++AG V +G                         
Sbjct: 370 MKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIG 429

Query: 394 ------LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
                 +  +A++L R+M  + ++ +  T+  +  A   L  L  A  I+ Y+ +     
Sbjct: 430 AMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHI 489

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            +++ T L+D++S+CG   +A ++F  +  + +D+  W+  I    + G+ + A+ LF E
Sbjct: 490 DMQLGTALVDMFSRCGDPLNAMRVFENM--EKRDVSAWTAAIRVKAVEGNAKGAIELFDE 547

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M++  V+ ++  F + L A SHGG +D+G  LF  M + H    +  HY C+VDLLGRAG
Sbjct: 548 MLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAG 607

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
            L+EA+DL+++MP+KP   +WG+ L AC  H NVE    A + + +L PE  G +VLLS 
Sbjct: 608 LLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSN 667

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           +Y++  +W D   VR  M EKG +K    S IEV  ++
Sbjct: 668 IYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLI 705


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/605 (35%), Positives = 353/605 (58%), Gaps = 8/605 (1%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGE-YNPDNYTYPIVIKACTDL 124
           +FDEM ER    +NTV+ + + +G   ++L  F  M+       PD  T   V+  C + 
Sbjct: 194 VFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAET 253

Query: 125 AWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
             + +   +H   L  G       VGN L+ +Y   G  KA++KVFD + E +V+SWN +
Sbjct: 254 EDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAI 313

Query: 184 ISGY-FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           I+ + F+  Y  +AL VF  M+  G+ P+  ++ S+LP  G L   ++G  +H       
Sbjct: 314 ITSFSFRGKYM-DALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMA 372

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
           +  ++   N+L+DMY K GS   A  +F++M  R++V+W +MI  +A N     A+ L +
Sbjct: 373 IESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVR 432

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            MQ +G  PN++T  ++L AC+ L +L  G+ +HA  I+     ++ V  AL DMY+KC 
Sbjct: 433 QMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCG 492

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            + L+  VF   S +  V +N ++ G      + +++ LF +M +  + P+  +   ++ 
Sbjct: 493 CLNLAQNVF-NISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVS 551

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A A LA ++Q   IH  L+R  F + + V+  L+D+Y++CG ++ A K+F    I++KD+
Sbjct: 552 ACANLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVF--YCIQNKDV 609

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
             W+ +I GYGM G  +TA++LF+ M + GV+ + V+F + L ACSHGGL+++G   F  
Sbjct: 610 ASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSACSHGGLIEKGRKYFKM 669

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           M + +   +   HY C+VDLLGRAG ++EA DLIR + + P   +WGALLGAC IHGN+E
Sbjct: 670 MCDLNIEPTHT-HYACMVDLLGRAGLMEEAADLIRGLSIIPDTNIWGALLGACRIHGNIE 728

Query: 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           LG  AA+ LFEL+P++ G Y+LLS +Y+   RW +A  VR++M  +G +K P  S ++V 
Sbjct: 729 LGLWAAEHLFELKPQHCGYYILLSNMYAEAERWDEANKVRELMKSRGAKKNPGCSWVQVG 788

Query: 663 NILTA 667
           +++ A
Sbjct: 789 DLVHA 793



 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 215/617 (34%), Positives = 328/617 (53%), Gaps = 25/617 (4%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSG--PLFTHLRSSLVRAY---GHVSNVRILFDE--M 70
            L+Q      +++ TKQ+HA+ +  G  P    L +SL+  Y   GH SN  +LF     
Sbjct: 39  NLLQLCTLCDTLSQTKQVHAYSLLHGFLPRSVSLCASLILQYASFGHPSNSLLLFQHSVA 98

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
             RS+FL+NT+++  +  G   D    +  M+R G   PD  TYP V+K C+D    + G
Sbjct: 99  YSRSAFLWNTLIRANSIAGV-FDGFGTYNTMVRAG-VKPDECTYPFVLKVCSDFVEVRKG 156

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
             +HG     GFD D FVGN L+A Y N G    A KVFD M E   VSWNT+I     +
Sbjct: 157 REVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLH 216

Query: 191 AYAKEALVVFDWML--KSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNI 247
            + +EAL  F  M+  K G++PD  +VVSVLP C   ++  M R++H   +  G LG ++
Sbjct: 217 GFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHV 276

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
              NALVD+Y KCGS   ++ VFD + ER+V++W ++I  ++  G   +AL +F+LM  E
Sbjct: 277 KVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDE 336

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           G+RPNS+TI S+L     L   K G  +H +++K  +E +V +  +LIDMYAK    +++
Sbjct: 337 GMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIA 396

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
             +F +   +  V WNA++A    N L  +AVEL RQM  +   PN+ T  ++LPA A L
Sbjct: 397 STIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARL 456

Query: 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
             L     IH  +IR G    + VS  L D+YSKCG L  A  +F+   I  +D V +++
Sbjct: 457 GFLNVGKEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQNVFN---ISVRDEVSYNI 513

Query: 488 IIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN- 546
           +I GY        ++ LF EM   G++P+ V+F   + AC++   + +G ++   ++   
Sbjct: 514 LIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKL 573

Query: 547 -HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
            H     A+    ++DL  R GR+D A  +   +  K   A W  ++    + G ++   
Sbjct: 574 FHTHLFVANS---LLDLYTRCGRIDLATKVFYCIQNKDV-ASWNTMILGYGMRGELD--- 626

Query: 606 VAAKWLFELEPENPGNY 622
             A  LFE   E+   Y
Sbjct: 627 -TAINLFEAMKEDGVEY 642


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/554 (37%), Positives = 316/554 (57%), Gaps = 2/554 (0%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           D++ Y  V+K C           +H  ++ +  + +  V N L+ +Y+  G ++ AR VF
Sbjct: 27  DSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVF 86

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           DA+ + S  SWN +I+GY ++ +A++A+ +F  M   GV+P+  + + +L AC  L  ++
Sbjct: 87  DALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALK 146

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
            G+ +H  +  G L  ++    AL+ MY KCGS+NEAR +FD +   D+++WT MI  YA
Sbjct: 147 WGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYA 206

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            +G+ + A  L   M+ EG +PN++T  S+L+AC+S   LK  + +H   +   LE +V 
Sbjct: 207 QSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVR 266

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           V TAL+ MYAK   +  +  VF R   +  V WN ++     +G   +A +LF QM  E 
Sbjct: 267 VGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEG 326

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
            +P+     S+L A A    L+    IH + +  G    V V T L+ +YSK GS++ A 
Sbjct: 327 CKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDAR 386

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
            +F  + +  +++V W+ +I+G   HG G+ A+ +F+ M   GV+P+ VTF + L ACSH
Sbjct: 387 VVFDRMKV--RNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSH 444

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
            GL+DEG   +  M + +       H  C+VDLLGRAGRL EA   I  M + P  A WG
Sbjct: 445 AGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWG 504

Query: 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
           ALLG+C  +GNVELGE+ AK   +L+P+N   YVLLS +Y+   +W     VR +M E+G
Sbjct: 505 ALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERG 564

Query: 650 LRKAPAHSLIEVRN 663
           +RK P  S IEV N
Sbjct: 565 IRKEPGRSWIEVDN 578



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 151/508 (29%), Positives = 263/508 (51%), Gaps = 9/508 (1%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVR 64
           L   + + ++++++    K +   KQ+H  II S      H+ ++L+  Y   G +   R
Sbjct: 24  LITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEAR 83

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
            +FD + ++S   +N ++  Y ++  + D++++F  M   G   P+  TY I++KAC  L
Sbjct: 84  CVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEG-VQPNAGTYMIILKACASL 142

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
           +  K G  +H  +   G + D  VG  L+ MY   G +  AR++FD +  H ++SW  +I
Sbjct: 143 SALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMI 202

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
             Y ++   KEA  +   M + G +P+  + VS+L AC     ++  + +H       L 
Sbjct: 203 GAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLE 262

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            ++    ALV MY K GS+++AR+VFDRM  RDVV+W  MI  +A +G    A  LF  M
Sbjct: 263 LDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQM 322

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
           Q EG +P+++   S+L+AC+S   L+  + +H   +   LE +V V TAL+ MY+K   +
Sbjct: 323 QTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSI 382

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA- 423
             +  VF R   +  V WNA+++G   +GL + A+E+FR+M    V+P+  T  ++L A 
Sbjct: 383 DDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSAC 442

Query: 424 -YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
            +A L D  ++  +    + YG    V     ++D+  + G L  A K+F +    D D 
Sbjct: 443 SHAGLVDEGRSQYLAMTQV-YGIEPDVSHCNCMVDLLGRAGRLMEA-KLFIDNMAVDPDE 500

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
             W  ++     +G+ E    + KE ++
Sbjct: 501 ATWGALLGSCRTYGNVELGELVAKERLK 528



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 123/406 (30%), Positives = 207/406 (50%), Gaps = 6/406 (1%)

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           EA+VV    L+ G+  D    V VL  C   K++   + +H+ +   R+ +N    N L+
Sbjct: 11  EAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLL 70

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
            +Y++CG + EAR VFD + ++   +W +MI GY  +    +A+ LF+ M  EGV+PN+ 
Sbjct: 71  HVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAG 130

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T   +L AC+SL  LK G+ +HA      LE +V V TAL+ MY KC  +  + ++F   
Sbjct: 131 TYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNL 190

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
                + W  ++     +G  ++A  L  QM  E  +PN  T  S+L A A    L+   
Sbjct: 191 MNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVK 250

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            +H + +  G    V V T L+ +Y+K GS++ A  +F  + +  +D+V W+V+I  +  
Sbjct: 251 RVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKV--RDVVSWNVMIGAFAE 308

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH-QTCSRA 553
           HG G  A  LF +M   G +P+ + F S L+AC+  G L+    +    L++  +   R 
Sbjct: 309 HGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRV 368

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
              T +V +  ++G +D+A  +   M ++     W A++     HG
Sbjct: 369 G--TALVHMYSKSGSIDDARVVFDRMKVRNV-VSWNAMISGLAQHG 411


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/638 (33%), Positives = 339/638 (53%), Gaps = 7/638 (1%)

Query: 32  TKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGAS 91
           ++ +H    T  P        LV+  GH+ N R +FD+MS++    + T++  Y     S
Sbjct: 38  SQNIHFISQTDLPESNKQLKELVKT-GHLGNARRMFDKMSQKDEISWTTLISGYVNANDS 96

Query: 92  HDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNC 151
            ++L +F  M        D +   +  KAC   +    G  LHG  + TG     FVG+ 
Sbjct: 97  SEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSA 156

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           L+ MY   G++   R+VF  M   +VVSW  +I+G  +  Y KEALV F  M +S VE D
Sbjct: 157 LLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYD 216

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW--NALVDMYVKCGSVNEARLV 269
             +    L AC     +  GR IH      + G +++++  N L  MY KCG +     +
Sbjct: 217 SYTFAIALKACADSGALNYGREIH--AQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTL 274

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F++MS RDVV+WT++I      G    A+  F  M+   V PN  T  +++S C++L  +
Sbjct: 275 FEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARI 334

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           + G  LHA  +   L   + VE +++ MYAKC  +  S  +F   +++  V W+ I+AG 
Sbjct: 335 EWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGY 394

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
              G   +A EL   M +E  +P +  L S+L A   +A L+    +H Y++  G     
Sbjct: 395 XQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTA 454

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            V + LI++Y KCGS+E A +IF     ++ DIV W+ +I GY  HG+    + LF+++ 
Sbjct: 455 MVLSALINMYCKCGSIEEASRIFD--AAENDDIVSWTAMINGYAEHGYSREVIDLFEKIP 512

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           + G++P+ VTF   L ACSH GL+D G   FN M + +Q     +HY C++DLL RAGRL
Sbjct: 513 RVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRL 572

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629
            +A  +I  MP      VW  LL AC +HG+VE G   A+ + +LEP   G ++ L+ +Y
Sbjct: 573 SDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIY 632

Query: 630 SAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           ++  +W++A ++R +M  KG+ K P  S I+V++++ A
Sbjct: 633 ASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVFA 670


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/640 (33%), Positives = 349/640 (54%), Gaps = 9/640 (1%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAYGH----VSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           +QLH  +I  G    T++ + LV  Y      +S  RI F  M+ R    YN+++    Q
Sbjct: 281 EQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERI-FSTMNSRDGVSYNSLISGLVQ 339

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
            G S  +L++F  M R     PD  T   ++ AC  +     G+ LH   +  G   D  
Sbjct: 340 QGFSDRALELFTKMQR-DCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADII 398

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           +   L+ +Y    +V+ A K F      ++V WN ++  Y +     ++  +F  M   G
Sbjct: 399 LEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEG 458

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           + P+  +  S+L  C  L  + +G  IH  V       N+   + L+DMY K G +  A 
Sbjct: 459 MIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALAL 518

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +  R+ E DVV+WT+MI GY  +     AL LF+ M++ G++ +++   S +SAC+ + 
Sbjct: 519 RILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIR 578

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L++G+ +HA +       ++ +  ALI +YA+C  ++ ++  F +   K  + WN++++
Sbjct: 579 ALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVS 638

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G   +G   +A+++F +ML    E N  T  S + A A LA+++Q   IH  +++ G+ S
Sbjct: 639 GLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDS 698

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
             EVS  LI +Y+K GS+  A + F+++   +++++ W+ +I GY  HG G  A+ LF+E
Sbjct: 699 EREVSNSLISLYAKSGSISDAWREFNDMS--ERNVISWNAMITGYSQHGCGMEALRLFEE 756

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M   G+ PN VTF   L ACSH GL+ EGLD F  M + H    +++HY C+VDLLGRAG
Sbjct: 757 MKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAG 816

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
           +LD A + I+ MP+     +W  LL ACVIH N+E+GE AA  L ELEPE+   YVL+S 
Sbjct: 817 QLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISN 876

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           +Y+  R+W   +  R +M + G++K P  S IEV+N + A
Sbjct: 877 IYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHA 916



 Score =  265 bits (677), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 183/566 (32%), Positives = 289/566 (51%), Gaps = 21/566 (3%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG----PLFTHLRSSLVRAY---GHVSNVRILFDEMS 71
           L++    + S+  T +LH  I  SG    PL   L  SLV  Y   G       +FDE S
Sbjct: 64  LLEGCLTSGSLFETMRLHCRISKSGFDGEPL---LIDSLVDNYFRHGDQHGAVKVFDENS 120

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT--DLAWRKL 129
            RS F +N ++ ++    ++     +F  ML  G   P+ YT+  V+KAC   D+A+  +
Sbjct: 121 NRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEG-ITPNGYTFAGVLKACVGGDIAFNYV 179

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
              +H R    GFD    V N LI +Y   G +++A+KVF+ +    +V+W  +ISG  +
Sbjct: 180 K-QVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQ 238

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N   +EA+++F  M  S + P    + SVL A   ++  E+G  +H LV           
Sbjct: 239 NGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYV 298

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
            N LV +Y +   +  A  +F  M+ RD V++ S+I+G    G    AL LF  MQ + +
Sbjct: 299 CNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCL 358

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
           +P+ +T+ SLLSAC+S+  L +G  LH+  IK  +  ++I+E +L+D+Y+KC  V+ + +
Sbjct: 359 KPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHK 418

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
            F  T  +  V WN +L           + E+FRQM +E + PN  T  S+L     L  
Sbjct: 419 FFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGA 478

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L     IH ++I+ GF   V V + LID+Y+K G L  A +I   +P  + D+V W+ +I
Sbjct: 479 LYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP--EDDVVSWTAMI 536

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           AGY  H     A+ LF+EM   G+Q + + F SA+ AC+    L +G  +     +++  
Sbjct: 537 AGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIH---AQSYAA 593

Query: 550 CSRADHY--TCIVDLLGRAGRLDEAY 573
              AD      ++ L  R GR+ EAY
Sbjct: 594 GFGADLSINNALISLYARCGRIQEAY 619



 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 152/571 (26%), Positives = 284/571 (49%), Gaps = 9/571 (1%)

Query: 33  KQLHA----FIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           KQ+H+    +   S PL  +L   L    G++ + + +F+ +  +    +  ++   +QN
Sbjct: 180 KQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQN 239

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   +++ +F  M    E  P  Y    V+ A T +   +LG  LH  V+  GF  +T+V
Sbjct: 240 GLEEEAILLFCDM-HASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYV 298

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+A+Y    ++ +A ++F  M     VS+N+LISG  +  ++  AL +F  M +  +
Sbjct: 299 CNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCL 358

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +PDC +V S+L AC  +  +  G  +H       +  +I    +L+D+Y KC  V  A  
Sbjct: 359 KPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHK 418

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
            F      ++V W  M+  Y    ++ ++  +F+ MQ EG+ PN  T  S+L  C+SL  
Sbjct: 419 FFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGA 478

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L  G  +H   IK   +  V V + LIDMYAK   + L+ ++  R  +   V W A++AG
Sbjct: 479 LYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAG 538

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            V + +  +A++LF +M    ++ ++    S + A A +  L+Q   IH      GF + 
Sbjct: 539 YVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGAD 598

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           + ++  LI +Y++CG ++ A+  F +I   DK+ + W+ +++G    G+ E A+ +F  M
Sbjct: 599 LSINNALISLYARCGRIQEAYLAFEKIG--DKNNISWNSLVSGLAQSGYFEEALQVFVRM 656

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
           +++  + N  T+ SA+ A +    + +G  + + +L+      R +    ++ L  ++G 
Sbjct: 657 LRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSER-EVSNSLISLYAKSGS 715

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           + +A+     M  +   + W A++     HG
Sbjct: 716 ISDAWREFNDMSERNVIS-WNAMITGYSQHG 745



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 132/469 (28%), Positives = 237/469 (50%), Gaps = 9/469 (1%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           LH R+  +GFD +  + + L+  Y   G+   A KVFD     SV SWN +I  +     
Sbjct: 80  LHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKS 139

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPAC-GYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
             +   +F  ML  G+ P+  +   VL AC G        + +H          +    N
Sbjct: 140 NFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVAN 199

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            L+D+Y K G +  A+ VF+ +  +D+VTW +MI+G + NG    A+ LF  M    + P
Sbjct: 200 LLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFP 259

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
               + S+LSA + +   + G  LH   IK     E  V   L+ +Y++   +  + ++F
Sbjct: 260 TPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIF 319

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
           +  + +  V +N++++G V  G + +A+ELF +M  + ++P+  T+ SLL A A +  L 
Sbjct: 320 STMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALH 379

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           + M +H + I+ G  + + +   L+D+YSKC  +E+AHK F  +  + ++IV+W+V++  
Sbjct: 380 KGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFF--LXTETENIVLWNVMLVA 437

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           YG   +   +  +F++M   G+ PN+ T+ S L  C+  G L  G  +   ++   +T  
Sbjct: 438 YGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVI---KTGF 494

Query: 552 RADHYTC--IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
           + + Y C  ++D+  + G+L  A  ++R +P       W A++   V H
Sbjct: 495 QLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDV-VSWTAMIAGYVQH 542



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 133/489 (27%), Positives = 249/489 (50%), Gaps = 7/489 (1%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNVRI---LFDEMS 71
           V  L+   A+  ++    QLH+  I +G      L  SL+  Y   ++V      F    
Sbjct: 365 VASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTE 424

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
             +  L+N ++  Y Q     DS ++F  M   G   P+ +TYP +++ CT L    LG 
Sbjct: 425 TENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMI-PNQFTYPSILRTCTSLGALYLGE 483

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H  V+ TGF ++ +V + LI MY  +G++  A ++   + E  VVSW  +I+GY ++ 
Sbjct: 484 QIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHD 543

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
              EAL +F+ M   G++ D     S + AC  ++ +  G+ IH        G +++  N
Sbjct: 544 MFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINN 603

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           AL+ +Y +CG + EA L F+++ +++ ++W S+++G A +G    AL +F  M       
Sbjct: 604 ALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEV 663

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           N  T GS +SA +SL  +K+G+ +H+  +K   + E  V  +LI +YAK   +  +++ F
Sbjct: 664 NMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREF 723

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
              S++  + WNA++ G   +G   +A+ LF +M V  + PN  T   +L A + +  ++
Sbjct: 724 NDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVK 783

Query: 432 QAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
           + ++    + + +  +   E    ++D+  + G L+ A +   E+PI   D ++W  +++
Sbjct: 784 EGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIP-ADAMIWRTLLS 842

Query: 491 GYGMHGHGE 499
              +H + E
Sbjct: 843 ACVIHKNIE 851



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 129/286 (45%), Gaps = 10/286 (3%)

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + L   M+  GVR N      LL  C +   L     LH    K   + E ++  +L+D 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y +      + +VF   S +    WN ++   V      +   LFR+ML E + PN  T 
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 418 NSLLPAYAILADL--QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
             +L A  +  D+       +H     YGF S   V+  LID+YSK G +ESA K+F+ I
Sbjct: 163 AGVLKA-CVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCI 221

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
            +  KDIV W  +I+G   +G  E A+ LF +M  S + P     +S L A +   L + 
Sbjct: 222 CM--KDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFEL 279

Query: 536 GLDLFNFMLENHQTCSRADHYTC--IVDLLGRAGRLDEAYDLIRTM 579
           G  L   ++   +    ++ Y C  +V L  R+ +L  A  +  TM
Sbjct: 280 GEQLHCLVI---KWGFHSETYVCNGLVALYSRSRKLISAERIFSTM 322



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 98/248 (39%), Gaps = 26/248 (10%)

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLI 456
           K ++L   M    V  N      LL        L + M +HC + + GF     +   L+
Sbjct: 41  KRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLV 100

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
           D Y + G    A K+F E    ++ +  W+ +I  +           LF+ M+  G+ PN
Sbjct: 101 DNYFRHGDQHGAVKVFDENS--NRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPN 158

Query: 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY---------TCIVDLLGRAG 567
             TF   L AC  G +       FN++ + H   SR  +Y           ++DL  + G
Sbjct: 159 GYTFAGVLKACVGGDI------AFNYVKQVH---SRTFYYGFDSSPLVANLLIDLYSKNG 209

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLL 625
            ++ A  +   + +K     W A++     +G   L E A     ++      P  YVL 
Sbjct: 210 YIESAKKVFNCICMKDI-VTWVAMISGLSQNG---LEEEAILLFCDMHASEIFPTPYVLS 265

Query: 626 SKLYSAVR 633
           S L ++ +
Sbjct: 266 SVLSASTK 273


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/651 (32%), Positives = 353/651 (54%), Gaps = 7/651 (1%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEM 70
           L+   ++  A +++++  +Q+H   +  G     ++ ++L+  Y   G +    ++FD +
Sbjct: 116 LLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGCIDAAMLVFDAL 175

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
             ++   +  V+  Y+Q G    +L++F G + L    PD +     + AC+ L + + G
Sbjct: 176 PVKNPVTWTAVITGYSQIGQGGVALELF-GKMGLDGVRPDRFVLASAVSACSALGFLEGG 234

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
              HG       + D  V N LI +Y     +  ARK+FD M   ++VSW T+I+GY +N
Sbjct: 235 RQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVSWTTMIAGYMQN 294

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
           +   EA+ +F  + + G +PD  +  S+L +CG L  I  GR +H       L  +    
Sbjct: 295 SCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVK 354

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           N+L+DMY KC  + EAR VF+ ++E D +++ +MI GY+  GD+  A+ +F  M++  ++
Sbjct: 355 NSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLK 414

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           P+ LT  SLL   SS   ++  + +H   +K     ++   ++LID+Y+K +LV+ +  V
Sbjct: 415 PSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAV 474

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F     +  V WNA++ G   N    +AV+LF Q+ V  + PN+ T  +L+   + L  +
Sbjct: 475 FNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSM 534

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
                 H  +I+ G  S   VS  LID+Y+KCG ++    +F       KD++ W+ +I+
Sbjct: 535 FHGQQFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFES--TLGKDVICWNSMIS 592

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
            Y  HG  E A+ +F+ M  +GV+PN VTF   L AC+H GL+DEGL  F+FM   +   
Sbjct: 593 TYAQHGQAEEALYVFRMMGGTGVEPNYVTFVGVLSACAHAGLVDEGLRHFDFMKTKYAIE 652

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
              +HY  +V+L GR+G+L  A + I  MP++P  AVW +LL AC + GNVE+G  A + 
Sbjct: 653 PGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPAAAVWRSLLSACHLFGNVEIGRYATEM 712

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
               +P + G  VL+S +Y++   W DA+ +R  MD  G+ K P +S IEV
Sbjct: 713 ALLADPADSGPSVLMSNIYASRGLWSDAQKLRQGMDCAGVVKEPGYSWIEV 763



 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 172/574 (29%), Positives = 290/574 (50%), Gaps = 13/574 (2%)

Query: 36  HAFIITSGPLFT-HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGAS 91
           HA  + +G L    L + L+RAY   G V + R LFD M  ++   + + + M+AQ+G  
Sbjct: 34  HARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCE 93

Query: 92  HDSLKMFLGMLRL-GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
            D++ +F    R  G   P+ +     ++AC        G  +HG  +  G D + +VG 
Sbjct: 94  EDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGT 153

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            LI +Y   G + AA  VFDA+   + V+W  +I+GY +      AL +F  M   GV P
Sbjct: 154 ALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRP 213

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D   + S + AC  L  +E GR  H       +  + +  NAL+D+Y KC  ++ AR +F
Sbjct: 214 DRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLSLARKLF 273

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
           D M  R++V+WT+MI GY  N     A+ +F  +  EG +P+     S+L++C SL  + 
Sbjct: 274 DCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIW 333

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
           +GR +HA  IK NLE +  V+ +LIDMYAKC  +  +  VF   ++   + +NA++ G  
Sbjct: 334 QGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYS 393

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
             G    A+++F +M    ++P+  T  SLL   +  + ++ +  IH  +++ G    + 
Sbjct: 394 RLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKSGTSLDLY 453

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
             + LID+YSK   +E A  +F+   + ++D+V+W+ +I G   +  GE AV LF ++  
Sbjct: 454 AGSSLIDVYSKFSLVEDAKAVFN--LMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQV 511

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGR 568
           SG+ PNE TF + +   S    +  G     F  +  +  + +DH+    ++D+  + G 
Sbjct: 512 SGLAPNEFTFVALVTVASTLVSMFHGQ---QFHAQIIKAGADSDHHVSNALIDMYAKCGF 568

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           + E   L  +  L      W +++     HG  E
Sbjct: 569 IKEGRLLFES-TLGKDVICWNSMISTYAQHGQAE 601


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/611 (34%), Positives = 335/611 (54%), Gaps = 4/611 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           GH++N R LFD+M +R    + T++  Y     + ++L +F  M      + D +   + 
Sbjct: 15  GHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILSLA 74

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +KAC        G +LHG  + T F    FVG+ L+ MYM  G+V     VF  M   +V
Sbjct: 75  LKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNV 134

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-E 236
           VSW  +I+G  +  Y KEAL  F  M    V  D  +  S L AC     +  GR IH +
Sbjct: 135 VSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQ 194

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            +  G    +  A N L  MY KCG ++    +F+ M++RDVV+WT++I      G   N
Sbjct: 195 TLKKGFTAVSFVA-NTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEEN 253

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A+  F+ M+   V PN  T  +++S C++L  ++ G  LHA  I++ L   + V  +++ 
Sbjct: 254 AVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMA 313

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY+KC  + L+  VF   S++  + W+ +++G    G   +A +    M  E   PN+  
Sbjct: 314 MYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFA 373

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
             S+L     +A L+Q   +H +++  G      V + LI++YSKCGS++ A KIF E  
Sbjct: 374 FASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAE 433

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
             +  IV W+ +I GY  HG+ + A+ LFK++ + G++P+ VTF + L ACSH GL+D G
Sbjct: 434 YNN--IVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLG 491

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
              FN + + HQ C   DHY C++DLL RAGRL++A  +I++MP +    VW  LL AC 
Sbjct: 492 FHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLRACR 551

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           IHG+V+ G+ AA+ + +L+P     ++ L+ +Y+A  +WK+A  VR +M  KG+ K P  
Sbjct: 552 IHGDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKGKWKEAAEVRKMMKSKGVVKEPGW 611

Query: 657 SLIEVRNILTA 667
           S I+ ++ ++A
Sbjct: 612 SWIKFKDRVSA 622



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/489 (29%), Positives = 227/489 (46%), Gaps = 36/489 (7%)

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM-LKSGV 208
           N ++   +  G +  AR++FD M +   +SW T+ISGY       EAL +F  M ++ G+
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
             D   +   L ACG    +  G  +H          ++   +ALVDMY+K G V+E  +
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCI 124

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VF  M  R+VV+WT++I G    G  + AL  F  M  + V  ++ T  S L AC+    
Sbjct: 125 VFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGA 184

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L  GR +H  T+K+       V   L  MY KC  +    ++F   +++  V W  I+  
Sbjct: 185 LNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMS 244

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            V  G    AV+ FR+M    V PN+ T  +++   A L  ++    +H ++IR G +  
Sbjct: 245 NVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDS 304

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           + V+  ++ +YSKC  L+ A  +F    +  +DI+ WS +I+GY   G GE A      M
Sbjct: 305 LSVANSIMAMYSKCWQLDLASTVFQ--GLSRRDIISWSTMISGYAQGGCGEEAFDYLSWM 362

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML------------------------ 544
            + G +PNE  F S L  C +  +L++G  L   +L                        
Sbjct: 363 RREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSI 422

Query: 545 -ENHQTCSRADH-----YTCIVDLLGRAGRLDEAYDLIRTMP---LKPTHAVWGALLGAC 595
            E  +    A++     +T +++     G   EA DL + +P   L+P    + A+L AC
Sbjct: 423 KEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAAC 482

Query: 596 VIHGNVELG 604
              G V+LG
Sbjct: 483 SHAGLVDLG 491



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 143/529 (27%), Positives = 254/529 (48%), Gaps = 34/529 (6%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAY---GH 59
           P  H  P    L +K         S++  + LH + + +  + +  + S+LV  Y   G 
Sbjct: 62  PGLHMDPFILSLALKAC---GLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGK 118

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           V    I+F EM  R+   +  ++    + G + ++L  F  M  + +   D YT+   +K
Sbjct: 119 VDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMW-IQKVGCDTYTFSSALK 177

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           AC D      G  +H + L  GF   +FV N L  MY   G++    ++F++M +  VVS
Sbjct: 178 ACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVS 237

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           W T+I    +    + A+  F  M ++ V P+  +  +V+  C  L  IE G  +H  V 
Sbjct: 238 WTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVI 297

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
              L  +++  N+++ MY KC  ++ A  VF  +S RD+++W++MI+GYA  G    A  
Sbjct: 298 RRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFD 357

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
               M+ EG RPN     S+LS C ++  L++G+ LHA  +   LE   +V++ALI+MY+
Sbjct: 358 YLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYS 417

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           KC  +K + ++F        V W A++ G   +G +++A++LF+++    + P+  T  +
Sbjct: 418 KCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIA 477

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST------------GLIDIYSKCGSLES 467
           +L A +           H  L+  GF     +S              +ID+  + G L  
Sbjct: 478 VLAACS-----------HAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLND 526

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
           A  +   +P + +D VVWS ++    +HG  +      ++++Q  + PN
Sbjct: 527 AESMIQSMPFQ-RDDVVWSTLLRACRIHGDVDCGKRAAEKILQ--LDPN 572


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/638 (33%), Positives = 339/638 (53%), Gaps = 7/638 (1%)

Query: 32  TKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGAS 91
           ++ +H    T  P        LV+  GH+ N R +FD+MS++    + T++  Y     S
Sbjct: 38  SQNIHFISQTDLPESNKQLKELVKT-GHLGNARRMFDKMSQKDEISWTTLISGYVNANDS 96

Query: 92  HDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNC 151
            ++L +F  M        D +   +  KAC   +    G  LHG  + TG     FVG+ 
Sbjct: 97  SEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSA 156

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           L+ MY   G++   R+VF  M   +VVSW  +I+G  +  Y KEALV F  M +S VE D
Sbjct: 157 LLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYD 216

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW--NALVDMYVKCGSVNEARLV 269
             +    L AC     +  GR IH      + G +++++  N L  MY KCG +     +
Sbjct: 217 SYTFAIALKACADSGALNYGREIH--AQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTL 274

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F++MS RDVV+WT++I      G    A+  F  M+   V PN  T  +++S C++L  +
Sbjct: 275 FEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARI 334

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           + G  LHA  +   L   + VE +++ MYAKC  +  S  +F   +++  V W+ I+AG 
Sbjct: 335 EWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGY 394

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
              G   +A EL   M +E  +P +  L S+L A   +A L+    +H Y++  G     
Sbjct: 395 SQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTA 454

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            V + LI++Y KCGS+E A +IF     ++ DIV W+ +I GY  HG+    + LF+++ 
Sbjct: 455 MVLSALINMYCKCGSIEEASRIFD--AAENDDIVSWTAMINGYAEHGYSREVIDLFEKIP 512

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           + G++P+ VTF   L ACSH GL+D G   FN M + +Q     +HY C++DLL RAGRL
Sbjct: 513 RVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRL 572

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629
            +A  +I  MP      VW  LL AC +HG+VE G   A+ + +LEP   G ++ L+ +Y
Sbjct: 573 SDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIY 632

Query: 630 SAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           ++  +W++A ++R +M  KG+ K P  S I+V++++ A
Sbjct: 633 ASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLVFA 670


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/618 (34%), Positives = 328/618 (53%), Gaps = 7/618 (1%)

Query: 47  THLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR 103
           +HL SSLV  Y    ++   R + +EM  +    +N  +          +++++F  ++R
Sbjct: 24  SHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFY-LMR 82

Query: 104 LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163
                 + + +  +I A   L     G ++H  V   GF+ D  + N  + MYM    V+
Sbjct: 83  HTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVE 142

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
              + F AM   ++ S N L+SG+       +   +   +L  G EP+  + +S+L  C 
Sbjct: 143 NGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCA 202

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
              ++  G+ IH  V    +  +   WN+LV++Y KCGS N A  VF  + ERDVV+WT+
Sbjct: 203 SKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTA 262

Query: 284 MINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN 343
           +I G+   G   + L +F  M  EG  PN  T  S+L +CSSL  +  G+ +HA  +K +
Sbjct: 263 LITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNS 321

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
           L+    V TAL+DMYAK   ++ +  +F R  K+    W  I+AG   +G   KAV+ F 
Sbjct: 322 LDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFI 381

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
           QM  E V+PN+ TL S L   + +A L     +H   I+ G    + V++ L+D+Y+KCG
Sbjct: 382 QMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCG 441

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            +E A  +F    +  +D V W+ II GY  HG G  A+  F+ M+  G  P+EVTF   
Sbjct: 442 CVEDAEVVFD--GLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGV 499

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           L ACSH GL++EG   FN + + +      +HY C+VD+LGRAG+  E    I  M L  
Sbjct: 500 LSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTS 559

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643
              +W  +LGAC +HGN+E GE AA  LFELEPE   NY+LLS +++A   W D  NVR 
Sbjct: 560 NVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRA 619

Query: 644 VMDEKGLRKAPAHSLIEV 661
           +M  +G++K P  S +EV
Sbjct: 620 LMSTRGVKKEPGCSWVEV 637



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 128/467 (27%), Positives = 220/467 (47%), Gaps = 9/467 (1%)

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
           RV+  G   D+ + + L+ +Y+    ++ AR+V + M    V  WN  +S        +E
Sbjct: 14  RVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQE 73

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           A+ +F  M  + +  +     S++ A   L +   G  IH  V       +I   NA V 
Sbjct: 74  AVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVT 133

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           MY+K  SV      F  M   ++ +  ++++G+           +   +  EG  PN  T
Sbjct: 134 MYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYT 193

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
             S+L  C+S   L  G+++H   IK  +  +  +  +L+++YAKC     + +VF    
Sbjct: 194 FISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 253

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
           ++  V W A++ G V  G     + +F QML E   PN  T  S+L + + L+D+     
Sbjct: 254 ERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQ 312

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           +H  +++        V T L+D+Y+K   LE A  IF+ + IK +D+  W+VI+AGY   
Sbjct: 313 VHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRL-IK-RDLFAWTVIVAGYAQD 370

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
           G GE AV  F +M + GV+PNE T  S+L  CS    LD G  L +  ++  Q+    D 
Sbjct: 371 GQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQS---GDM 427

Query: 556 Y--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           +  + +VD+  + G +++A  +   +  + T   W  ++     HG 
Sbjct: 428 FVASALVDMYAKCGCVEDAEVVFDGLVSRDT-VSWNTIICGYSQHGQ 473


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 243/684 (35%), Positives = 362/684 (52%), Gaps = 50/684 (7%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---R 64
           +P        +++  A  + +   KQLHA +   G  L T + +SLV  YG   ++   R
Sbjct: 81  VPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAAR 140

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
            +FDE++ R    +N+++    +      ++ +F  ML L    P ++T   V  AC++L
Sbjct: 141 RVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLML-LENVGPTSFTLVSVAHACSNL 199

Query: 125 A-WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
                LG  +H  VL  G D  TF  N L+ MY   G V  A+ +FD   +  +VSWNT+
Sbjct: 200 INGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTI 258

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV-AGGR 242
           IS   +N   +EAL+    ML+SGV P+  ++ SVLPAC +L+ +  G+ IH  V     
Sbjct: 259 ISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNND 318

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
           L +N     ALVDMY  C    + RLVFD M  R +  W +MI GY  N     A+ LF 
Sbjct: 319 LIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFV 378

Query: 303 LMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
            M FE G+ PNS+T+ S+L AC           +H+  +K   E +  V+ AL+DMY++ 
Sbjct: 379 EMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRM 438

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE---------- 411
             ++++  +F   ++K  V WN ++ G V  G    A+ L   M     E          
Sbjct: 439 GRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYE 498

Query: 412 --------PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
                   PN  TL ++LP  A LA L +   IH Y ++      V V + L+D+Y+KCG
Sbjct: 499 DNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCG 558

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG-----VQPNEV 518
            L  +  +F ++ +++  ++ W+V+I  YGMHG GE A+ LF+ MV+ G     ++PNEV
Sbjct: 559 CLNLSRTVFEQMSVRN--VITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEV 616

Query: 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578
           T+ +   + SH G++DEGL+LF  M   H     +DHY C+VDLLGR+G+++EAY+LI+T
Sbjct: 617 TYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKT 676

Query: 579 MP--LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWK 636
           MP  +K   A W +LLGAC IH N+E+GE+AAK LF L+P    N +      S + R  
Sbjct: 677 MPSNMKKVDA-WSSLLGACKIHQNLEIGEIAAKNLFVLDP----NVLDYGTKQSMLGR-- 729

Query: 637 DAENVRDVMDEKGLRKAPAHSLIE 660
                   M EKG+RK P  S IE
Sbjct: 730 -------KMKEKGVRKEPGCSWIE 746



 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 171/552 (30%), Positives = 270/552 (48%), Gaps = 32/552 (5%)

Query: 92  HDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNC 151
           H ++  +  M+  G   PDN+ +P V+KA   +    LG  LH  V   G  + T V N 
Sbjct: 67  HQAISTYTNMVTAG-VPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNS 125

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           L+ MY   G++ AAR+VFD +     VSWN++I+   +    + A+ +F  ML   V P 
Sbjct: 126 LVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPT 185

Query: 212 CASVVSVLPACGYL-KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
             ++VSV  AC  L   + +G+ +H  V      +     NALV MY K G V EA+ +F
Sbjct: 186 SFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTN-NALVTMYAKLGRVYEAKTLF 244

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
           D   ++D+V+W ++I+  + N     AL    +M   GVRPN +T+ S+L ACS L  L 
Sbjct: 245 DVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLG 304

Query: 331 RGRSLHAWTIKQNLECE-VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
            G+ +HA+ +  N   E   V  AL+DMY  C   +    VF    ++    WNA++AG 
Sbjct: 305 CGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGY 364

Query: 390 VHNGLARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
           V N    +A+ELF +M+ E+ + PN  TL+S+LPA            IH  ++++GF   
Sbjct: 365 VRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKD 424

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             V   L+D+YS+ G +E A  IF    +  KDIV W+ +I GY + G  + A++L  +M
Sbjct: 425 KYVQNALMDMYSRMGRIEIARSIFGS--MNRKDIVSWNTMITGYVVCGRHDDALNLLHDM 482

Query: 509 VQSG-------------------VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
            Q G                   ++PN VT  + L  C+    L +G ++  + ++   +
Sbjct: 483 -QRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLS 541

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
              A   + +VD+  + G L+ +  +   M ++     W  L+ A  +HG    GE A K
Sbjct: 542 KDVAVG-SALVDMYAKCGCLNLSRTVFEQMSVRNV-ITWNVLIMAYGMHGK---GEEALK 596

Query: 610 WLFELEPENPGN 621
               +  E   N
Sbjct: 597 LFRRMVEEGDNN 608



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 152/527 (28%), Positives = 266/527 (50%), Gaps = 38/527 (7%)

Query: 3   GPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GH 59
           GP+  TL    H    L+        +   KQ+HAF++ +G   T   ++LV  Y   G 
Sbjct: 183 GPTSFTLVSVAHACSNLIN------GLLLGKQVHAFVLRNGDWRTFTNNALVTMYAKLGR 236

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           V   + LFD   ++    +NT++   +QN    ++L     ML+ G   P+  T   V+ 
Sbjct: 237 VYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSG-VRPNGVTLASVLP 295

Query: 120 ACTDLAWRKLGIALHGRVLITGFDM--DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           AC+ L     G  +H  VL+   D+  ++FVG  L+ MY N  + +  R VFD M+  ++
Sbjct: 296 ACSHLEMLGCGKEIHAFVLMNN-DLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTI 354

Query: 178 VSWNTLISGYFKNAYAKEALVVF-DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
             WN +I+GY +N +  EA+ +F + + + G+ P+  ++ SVLPAC   +       IH 
Sbjct: 355 AVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHS 414

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            V      K+    NAL+DMY + G +  AR +F  M+ +D+V+W +MI GY + G   +
Sbjct: 415 CVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDD 474

Query: 297 ALGLFQLMQ----------FEG--------VRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           AL L   MQ          F+         ++PNS+T+ ++L  C++L  L +G+ +HA+
Sbjct: 475 ALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAY 534

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
            +KQ L  +V V +AL+DMYAKC  + LS  VF + S +  + WN ++     +G   +A
Sbjct: 535 AVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEA 594

Query: 399 VELFRQMLVE-----VVEPNDATLNSLLPAYAILADLQQAMNI-HCYLIRYGFLSVVEVS 452
           ++LFR+M+ E      + PN+ T  ++  + +    + + +N+ +    ++G     +  
Sbjct: 595 LKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHY 654

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
             L+D+  + G +E A+ +   +P   K +  WS ++    +H + E
Sbjct: 655 ACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLE 701


>gi|224141133|ref|XP_002323929.1| predicted protein [Populus trichocarpa]
 gi|222866931|gb|EEF04062.1| predicted protein [Populus trichocarpa]
          Length = 770

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/644 (35%), Positives = 354/644 (54%), Gaps = 29/644 (4%)

Query: 34  QLHAF-IITSGPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           Q+H F II      T + +SL+  Y   G       +F+ ++      +NTV+   +   
Sbjct: 85  QIHGFSIIHEFVNVTIVSNSLMNMYCKSGQFCKALCIFENLTHPDIVSWNTVL---SGCQ 141

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK------LGIALHGRVLITGFD 143
            S D+      M   G    D  TY  V+  C    WR       +G+ LH  ++  GFD
Sbjct: 142 TSEDAFSFACKMNSSGVVF-DAVTYTTVLSFC----WRHVEAYFLIGLQLHSCIVKFGFD 196

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA-YAKEALVVFDW 202
            + FVGN LI+MY  +G +  AR+VF+ M    +VSWN +ISGY +   Y  EA+ +F  
Sbjct: 197 CEVFVGNALISMYSRWGHLVEARRVFEEMKTRDLVSWNAMISGYSQEGIYGLEAISMFLQ 256

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           M + G+E D  S  S + ACGY K +E+ R IH L    R  K++A  N L+  Y KC  
Sbjct: 257 MFRGGMELDRISFTSAVSACGYEKNLELARQIHGLSIKTRHEKHVAVSNVLISTYFKCQV 316

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           + +ARLVF  M+ER+VV+WT+MI+      D   A+  F  M+ +GV PN +T   L+ A
Sbjct: 317 IEDARLVFQNMNERNVVSWTTMISI-----DEAEAVSFFNEMRLDGVYPNDVTFVGLIHA 371

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
            +    + +G+ +H +  K     +  V  ++I MYAK   ++ S +VF     +  + W
Sbjct: 372 ITIGELVVQGKMVHGFCTKTGFSSKSNVCNSIITMYAKFKSMQDSVKVFQELKYQDIIAW 431

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD--LQQAMNIHCYL 440
           NA+++G VHNGL ++A+  F   L+E  +PN  +  S+L A     D  L+     H  +
Sbjct: 432 NALISGFVHNGLCQEAIRAFFSGLIES-KPNQYSFGSILNAIGAAEDVSLKYGQRCHSQI 490

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           I+ G  +   VS+ L+D+Y+K GS+  + K+F E P + +    W+ II+ Y  HG  E+
Sbjct: 491 IKLGLNTDPIVSSALLDMYAKRGSICESQKVFVETPQQSQ--FAWTTIISAYARHGDYES 548

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560
            ++ F+EM +  V+P+ +TF S L AC   G++D G  LF  M++++Q    A+HY+C+V
Sbjct: 549 VMNWFEEMRRLEVRPDSITFLSILTACGRRGMVDMGCHLFGSMVKDYQIEPSAEHYSCLV 608

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620
           D+LGRAGRL+EA  L+  +P  P  +V  +LLGAC +HGNV++GE  A  L E+EP   G
Sbjct: 609 DMLGRAGRLEEAERLMSHIPGGPGLSVLQSLLGACRVHGNVDMGERVADALMEMEPTESG 668

Query: 621 NYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
           +YVL+S LY+ + +W+    VR  M  KG++K    S ++V  I
Sbjct: 669 SYVLMSNLYAEIGKWEMVAKVRKRMRVKGVKKEVGFSWVDVGGI 712



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 151/543 (27%), Positives = 254/543 (46%), Gaps = 43/543 (7%)

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
           N D +T    +KAC    +  LG  +HG  +I  F   T V N L+ MY   G+   A  
Sbjct: 63  NIDEFTVANALKACR--GYPLLGSQIHGFSIIHEFVNVTIVSNSLMNMYCKSGQFCKALC 120

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F+ +    +VSWNT++SG      +++A      M  SGV  D  +  +VL  C   + 
Sbjct: 121 IFENLTHPDIVSWNTVLSGC---QTSEDAFSFACKMNSSGVVFDAVTYTTVLSFC--WRH 175

Query: 228 IE----MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
           +E    +G  +H  +        +   NAL+ MY + G + EAR VF+ M  RD+V+W +
Sbjct: 176 VEAYFLIGLQLHSCIVKFGFDCEVFVGNALISMYSRWGHLVEARRVFEEMKTRDLVSWNA 235

Query: 284 MINGYALNGDVR-NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           MI+GY+  G     A+ +F  M   G+  + ++  S +SAC     L+  R +H  +IK 
Sbjct: 236 MISGYSQEGIYGLEAISMFLQMFRGGMELDRISFTSAVSACGYEKNLELARQIHGLSIKT 295

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
             E  V V   LI  Y KC +++ +  VF   +++  V W  +++  +      +AV  F
Sbjct: 296 RHEKHVAVSNVLISTYFKCQVIEDARLVFQNMNERNVVSWTTMIS--IDEA---EAVSFF 350

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
            +M ++ V PND T   L+ A  I   + Q   +H +  + GF S   V   +I +Y+K 
Sbjct: 351 NEMRLDGVYPNDVTFVGLIHAITIGELVVQGKMVHGFCTKTGFSSKSNVCNSIITMYAKF 410

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV-SLFKEMVQSGVQPNEVTFT 521
            S++ + K+F E  +K +DI+ W+ +I+G+  +G  + A+ + F  +++S  +PN+ +F 
Sbjct: 411 KSMQDSVKVFQE--LKYQDIIAWNALISGFVHNGLCQEAIRAFFSGLIES--KPNQYSFG 466

Query: 522 SALHACSHGGLLDEGL--------DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
           S L+A   G   D  L         +    L      S A     ++D+  + G + E+ 
Sbjct: 467 SILNAI--GAAEDVSLKYGQRCHSQIIKLGLNTDPIVSSA-----LLDMYAKRGSICESQ 519

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE--PENPGNYVLLSKLYSA 631
            +    P +   A W  ++ A   HG+    E    W  E+      P +   LS L + 
Sbjct: 520 KVFVETPQQSQFA-WTTIISAYARHGDY---ESVMNWFEEMRRLEVRPDSITFLSILTAC 575

Query: 632 VRR 634
            RR
Sbjct: 576 GRR 578


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/603 (37%), Positives = 323/603 (53%), Gaps = 71/603 (11%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV--------------- 177
           +H  ++ + F  +TF+ N LI +Y   G V  ARK+FD M E ++               
Sbjct: 41  VHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGF 100

Query: 178 ----------------VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPA 221
                            SWN++ISG+ ++    EALV F  M   G   +  S  S L A
Sbjct: 101 LDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSA 160

Query: 222 CGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTW 281
           C  L+++++G  IH LV       ++   +ALVDMY KCG V  A+ VFD M+ R  V+W
Sbjct: 161 CAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSW 220

Query: 282 TSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
            S+I  Y  NG V  AL +F  M   GV P+ +T+ S++SAC+++  +K G+ +HA  +K
Sbjct: 221 NSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVK 280

Query: 342 -QNLECEVIVETALIDMYAKCNL-------------------------------VKLSFQ 369
                 ++I+  AL+DMYAKCN                                VK++  
Sbjct: 281 CDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARY 340

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           +F+    K  + WNA++AGC  NG   +A+ LFR +  E V P   T  +LL A A LAD
Sbjct: 341 MFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLAD 400

Query: 430 LQQAMNIHCYLIRYGFL------SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
           LQ     H +++++GF       S V V   LID+Y KCGS+E+  ++F  +   +KD V
Sbjct: 401 LQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHML--EKDCV 458

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ +I GY  +G G  A+ +F +M++SG  P+ VT    L ACSH GLLDEG   F  M
Sbjct: 459 SWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSM 518

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
              H      DHYTC+VDLLGRAG L+EA +LI  M ++P   VWG+LL AC +H N++L
Sbjct: 519 TAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQL 578

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           GE   K L E++PEN G YVLLS +Y+  R WK+   VR +M ++G+ K P  S IE++ 
Sbjct: 579 GEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEIQG 638

Query: 664 ILT 666
            L 
Sbjct: 639 ELN 641



 Score =  251 bits (641), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 174/568 (30%), Positives = 283/568 (49%), Gaps = 78/568 (13%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSGPLF--THLRSSLVRAYGHVSNV---RILFDEMSE 72
           KL+ Q A ++S   T ++HA II S P    T +++ L+  YG    V   R LFD M E
Sbjct: 24  KLLNQCARSRSARDTSRVHACIIKS-PFASETFIQNRLIDVYGKCGCVDVARKLFDRMLE 82

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL---------------GEYNP-------- 109
           R+ F +N+++  + ++G   D++ +F  M ++               G ++         
Sbjct: 83  RNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQM 142

Query: 110 -------DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEV 162
                  + Y++   + AC  L   KLG  +H  V  + +  D ++G+ L+ MY   G V
Sbjct: 143 HGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRV 202

Query: 163 KAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC 222
           + A+ VFD M   S VSWN+LI+ Y +N    EAL +F  M+K GVEPD  ++ SV+ AC
Sbjct: 203 EYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSAC 262

Query: 223 GYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTW 281
             +  I+ G+ IH  +V       ++   NAL+DMY KC  +NEAR++FD M  R VV+ 
Sbjct: 263 ATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSE 322

Query: 282 TSMINGYA-------------------------------LNGDVRNALGLFQLMQFEGVR 310
           TSM++GYA                                NG+   AL LF+L++ E V 
Sbjct: 323 TSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVW 382

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL------ECEVIVETALIDMYAKCNLV 364
           P   T G+LL+AC++L  L+ GR  H+  +K         + +V V  +LIDMY KC  V
Sbjct: 383 PTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSV 442

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA- 423
           +   +VF    +K  V WNA++ G   NG   KA+E+F +ML     P+  T+  +L A 
Sbjct: 443 ENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCAC 502

Query: 424 -YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
            +A L D +          ++G + + +  T ++D+  + G LE A  +  E+ ++  D 
Sbjct: 503 SHAGLLD-EGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQ-PDA 560

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           +VW  ++A   +H + +    + K++++
Sbjct: 561 IVWGSLLAACKVHRNIQLGEYVVKKLLE 588



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 148/322 (45%), Gaps = 47/322 (14%)

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
           GL + ++ + +  +S     LL+ C+     +    +HA  IK     E  ++  LID+Y
Sbjct: 5   GLVKHLKGDLLFLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVY 64

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM----------LVE 408
            KC  V ++ ++F R  ++    WN+I+     +G    AV +F +M          ++ 
Sbjct: 65  GKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMIS 124

Query: 409 VVEP---------------------NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
             E                      N+ +  S L A A L DL+    IH  + R  +LS
Sbjct: 125 GFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLS 184

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            V + + L+D+YSKCG +E A  +F E+ ++ +  V W+ +I  Y  +G  + A+ +F E
Sbjct: 185 DVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSR--VSWNSLITCYEQNGPVDEALKIFVE 242

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY-------TCIV 560
           M++ GV+P+EVT  S + AC+    + EG  +       H    + D +         ++
Sbjct: 243 MIKCGVEPDEVTLASVVSACATISAIKEGQQI-------HARVVKCDEFRNDLILGNALL 295

Query: 561 DLLGRAGRLDEAYDLIRTMPLK 582
           D+  +  R++EA  +   MP++
Sbjct: 296 DMYAKCNRINEARIIFDMMPIR 317


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/500 (38%), Positives = 297/500 (59%), Gaps = 23/500 (4%)

Query: 163 KAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC 222
           ++A ++FD + +  V+SWN++ISGY  N   +  L ++  M+  G++ D A+++SVL  C
Sbjct: 64  ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGC 123

Query: 223 GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
                + +G+ +H L       + I   N L+DMY KCG ++ A  VF++M ER+VV+WT
Sbjct: 124 AKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWT 183

Query: 283 SMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           SMI GY  +G    A+ L Q M+ EGV+ + + I S+L AC+    L  G+ +H +    
Sbjct: 184 SMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN 243

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
           N+   + V  AL+DMYAKC  ++ +  VF+    K  + WN                   
Sbjct: 244 NMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNT------------------ 285

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
              +V  ++P+  T+  +LPA A L+ L++   IH Y++R G+ S   V+  L+D+Y KC
Sbjct: 286 ---MVGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 342

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G L  A  +F  IP   KD+V W+V+IAGYGMHG+G  A++ F EM  +G++P+EV+F S
Sbjct: 343 GVLGLARLLFDMIP--SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFIS 400

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
            L+ACSH GLL++G   F  M  +     + +HY C+VDLL R G L +AY  I T+P+ 
Sbjct: 401 ILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIA 460

Query: 583 PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642
           P   +WGALL  C I+ ++EL E  A+ +FELEPEN G YVLL+ +Y+   +W++ + +R
Sbjct: 461 PDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMR 520

Query: 643 DVMDEKGLRKAPAHSLIEVR 662
           + + +KGLRK P  S IE++
Sbjct: 521 EKIGKKGLRKNPGCSWIEIK 540



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 218/428 (50%), Gaps = 26/428 (6%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LFD++ +R    +N+++  Y  NG +   L ++  M+ LG  + D  T   V+  C    
Sbjct: 69  LFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG-IDVDLATIISVLVGCAKSG 127

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
              LG A+H   + + F+      N L+ MY   G++  A +VF+ M E +VVSW ++I+
Sbjct: 128 TLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIA 187

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY ++ ++  A+++   M K GV+ D  ++ S+L AC     ++ G+ +H+ +    +  
Sbjct: 188 GYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMAS 247

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           N+   NAL+DMY KCGS+  A  VF  M  +D+++W +M+                    
Sbjct: 248 NLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG------------------- 288

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
              ++P+S T+  +L AC+SL  L+RG+ +H + ++     +  V  AL+D+Y KC ++ 
Sbjct: 289 --ELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLG 346

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
           L+  +F     K  V W  ++AG   +G   +A+  F +M    +EP++ +  S+L A +
Sbjct: 347 LARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACS 406

Query: 426 ILADLQQAMNIHCYLIRYGF--LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
               L+Q      Y+++  F     +E    ++D+ S+ G+L  A+K    +PI   D  
Sbjct: 407 HSGLLEQGWRFF-YIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIA-PDAT 464

Query: 484 VWSVIIAG 491
           +W  ++ G
Sbjct: 465 IWGALLCG 472



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 115/406 (28%), Positives = 193/406 (47%), Gaps = 54/406 (13%)

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE--------- 265
           +VS    CG LKE   GR + + +      KN+  WN +V  Y K G   E         
Sbjct: 2   LVSFYATCGDLKE---GRRVFDTMEK----KNVYLWNFMVSEYAKIGDFKESICLFKIMV 54

Query: 266 -----------ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
                      A  +FD++ +RDV++W SMI+GY  NG     LG+++ M + G+  +  
Sbjct: 55  EKGIEGKRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLA 114

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           TI S+L  C+    L  G+++H+  IK + E  +     L+DMY+KC  +  + +VF + 
Sbjct: 115 TIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKM 174

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
            ++  V W +++AG   +G +  A+ L +QM  E V+ +   + S+L A A    L    
Sbjct: 175 GERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGK 234

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
           ++H Y+      S + V   L+D+Y+KCGS+E A+ +FS + +  KDI+ W+ ++     
Sbjct: 235 DVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVV--KDIISWNTMV----- 287

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
              GE             ++P+  T    L AC+    L+ G ++  ++L N  +  R  
Sbjct: 288 ---GE-------------LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDR-- 329

Query: 555 HY-TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           H    +VDL  + G L  A  L   +P K     W  ++    +HG
Sbjct: 330 HVANALVDLYVKCGVLGLARLLFDMIPSKDL-VSWTVMIAGYGMHG 374


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/603 (35%), Positives = 341/603 (56%), Gaps = 7/603 (1%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI-VIKACTDL 124
           +FDEM  R    +N+++     NG   D+ +  +GM+R G   P N    + V+ AC   
Sbjct: 169 VFDEMPARDIVSWNSLVSALLTNGMLEDAKRAVVGMMRSGI--PVNVASLVSVVPACGTE 226

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
                G+++HG VL +G D    +GN L+ MY  FG+++++ +VF+ M E + VSWN+ +
Sbjct: 227 RDEGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSAL 286

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
             +    + ++ L +F  M +  V P   ++ S+LPA   L    +G+ +H       + 
Sbjct: 287 GCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFHLGKEVHGYSIRRAME 346

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            +I   N+L+DMY K G + +A  +F+ +  R+VV+W +MI   A NG    A  L   M
Sbjct: 347 SDIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEM 406

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
           Q  G  PNS T+ +LL ACS +  +K G+ +HAW+I ++L  ++ V  ALID+YAKC  +
Sbjct: 407 QKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQL 466

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
            ++  +F R S+K  V +N ++ G   +    +++ LF+QM    +E +  +    L A 
Sbjct: 467 SVAQDIFDR-SEKDDVSYNTLIVGYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSAC 525

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           A L+  +Q   IH  L+R    +   ++  L+D+Y+K G L +A KIF+ I    KD+  
Sbjct: 526 ANLSAFKQGKEIHGVLVRRLLNTHPFLANSLLDLYTKGGMLATASKIFNRI--TRKDVAS 583

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+ +I GYGMHG  + A  LF  M   GV  + V++ + L ACSHGGL+D G   F+ M+
Sbjct: 584 WNTMILGYGMHGQIDVAFELFDLMKDDGVDYDHVSYIAVLSACSHGGLVDRGKKYFSQMI 643

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
             +    +  HY C+VDLLGRAG+L E+ ++I  MP      VWGALLG+C IHG++EL 
Sbjct: 644 AQNIKPQQM-HYACMVDLLGRAGQLSESVEIITNMPFPANSDVWGALLGSCRIHGDIELA 702

Query: 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
            +AA+ LFEL+PE+ G Y LL  +YS    W +A  ++ +M  + ++K PA+S ++  N 
Sbjct: 703 RLAAEHLFELKPEHSGYYTLLRNMYSESGMWNEANEIKTLMKSRKVQKNPAYSWVQSGNK 762

Query: 665 LTA 667
           L A
Sbjct: 763 LQA 765



 Score =  258 bits (659), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 180/607 (29%), Positives = 305/607 (50%), Gaps = 31/607 (5%)

Query: 33  KQLHAFIITSGPLFTHL--RSSLVRAYGHVSNV---RILFDE--MSERSSFLYNTVMKMY 85
           ++ HA  + SG L   L    +L+ +Y  + ++   R++     +  RS+FL+N++ +  
Sbjct: 22  RRAHAASLVSGALTASLPLAGALLLSYAALRDIPSARLILRHHPLRLRSAFLWNSLSRAL 81

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL-----GIALHGRVLIT 140
           A  G   ++L+++  M+R G   PD+ T+P  + A       +      G  LH   L  
Sbjct: 82  ASAGLPSEALRVYNCMVRSG-VRPDDRTFPFALHAAAAAVVAEAEHPAKGAELHAAALRR 140

Query: 141 GFDM-DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
           G  + D F GN L+  Y   G    AR+VFD M    +VSWN+L+S    N   ++A   
Sbjct: 141 GLLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLVSALLTNGMLEDAKRA 200

Query: 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVK 259
              M++SG+  + AS+VSV+PACG  ++   G  +H LV    L   +   NALVDMY K
Sbjct: 201 VVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSVVNLGNALVDMYGK 260

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
            G +  +  VF+ M E++ V+W S +  +A  G   + L +F++M    V P S+T+ SL
Sbjct: 261 FGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSL 320

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           L A   L Y   G+ +H ++I++ +E ++ +  +L+DMYAK   ++ +  +F     +  
Sbjct: 321 LPALVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNV 380

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           V WNA++A    NG   +A  L  +M      PN  TL +LLPA + +A ++    IH +
Sbjct: 381 VSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAW 440

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            I    +S + VS  LID+Y+KCG L  A  IF      +KD V ++ +I GY       
Sbjct: 441 SIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDR---SEKDDVSYNTLIVGYSQSQCCF 497

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD----LFNFMLENHQTCSRADH 555
            ++ LF++M  +G++ + V+F   L AC++     +G +    L   +L  H   + +  
Sbjct: 498 ESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLNTHPFLANS-- 555

Query: 556 YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
              ++DL  + G L  A  +   +  K   A W  ++    +HG +++    A  LF+L 
Sbjct: 556 ---LLDLYTKGGMLATASKIFNRITRKDV-ASWNTMILGYGMHGQIDV----AFELFDLM 607

Query: 616 PENPGNY 622
            ++  +Y
Sbjct: 608 KDDGVDY 614


>gi|115473581|ref|NP_001060389.1| Os07g0635800 [Oryza sativa Japonica Group]
 gi|22293699|dbj|BAC10044.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113611925|dbj|BAF22303.1| Os07g0635800 [Oryza sativa Japonica Group]
 gi|125601219|gb|EAZ40795.1| hypothetical protein OsJ_25273 [Oryza sativa Japonica Group]
          Length = 705

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/640 (34%), Positives = 347/640 (54%), Gaps = 20/640 (3%)

Query: 32  TKQLHAFIITSGPLF-THLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
            ++LHA ++  G    T L + LVRAY   G V++   +FD M  R+SF +N V+K    
Sbjct: 72  ARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIKGLVD 131

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
            G   ++L+MF GM+  G    D +TYP VIKAC       LG    GR +    + D  
Sbjct: 132 AGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACA-----ALGAVAQGRKVWEMVETDIA 186

Query: 148 VGNC---------LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
            GN          L+ M+   G +  AR VF++M    + +W  +I G   +    E + 
Sbjct: 187 SGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEVVD 246

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           +F+ M   G   D     +V+ ACG   E+++G  +H          +I   NALVDMY 
Sbjct: 247 LFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYC 306

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           KCG V  A  +F   + +DVV+W+S+I GY+ NG    ++ LF  M   G+ PNS T+ S
Sbjct: 307 KCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLAS 366

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           +L   S L  ++ G+ +H ++I+  LE    V +ALID+Y+K  L++++  +F  T  K 
Sbjct: 367 ILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKD 426

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
              WN+++AG   NG +  A    R +    ++P+  T+ S+LP       L Q   +H 
Sbjct: 427 LAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHA 486

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           Y+I+Y   SV  V+  L+D+Y KCG LE A ++F    + +++ V ++++I+ +G H H 
Sbjct: 487 YVIKYCINSVCSVNNALLDMYCKCGFLEVAKEVFQ--LMTERNTVTYNILISSFGKHNHE 544

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
           + A+S F  M + G+ P++VTF + L  CSH GL+D+GL L++ ML ++      +HY+C
Sbjct: 545 DQALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHLYHSMLHDYNISPEKEHYSC 604

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
           IVDL  R G+LDEA+  +  M  +P   V G LL AC +H  +++ E+  K +FE  P +
Sbjct: 605 IVDLYSRCGKLDEAWCFMSNMAEEPEIDVLGGLLAACRVHNRMDIAELVGKRIFEQNPND 664

Query: 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSL 658
           PG ++LLS +Y+    W D   +R ++ E+ L+K   +SL
Sbjct: 665 PGYHILLSNIYADAGMWSDVTRIRTMIQERNLKKETGNSL 704



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/395 (28%), Positives = 182/395 (46%), Gaps = 18/395 (4%)

Query: 213 ASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR 272
           AS++  L +C   +E    R +H  V  G  G        LV  Y K G V  A  VFD 
Sbjct: 57  ASLLLRLQSCPDFQE---ARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDG 113

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKR 331
           M  R+   W ++I G    G    AL +F  M  +G V  +  T   ++ AC++L  + +
Sbjct: 114 MPRRNSFAWNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQ 173

Query: 332 GRSLHAWTIKQ------NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           GR +  W + +      N    V V+ AL+DM+AKC  +  +  VF     +    W A+
Sbjct: 174 GRKV--WEMVETDIASGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAM 231

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           + G VH+G   + V+LF  M  E    +     +++ A     +LQ    +H   ++ G 
Sbjct: 232 IGGTVHSGNWLEVVDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGA 291

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
              + VS  L+D+Y KCG +E A  +F       KD+V WS +I GY  +G    +VSLF
Sbjct: 292 SGDIYVSNALVDMYCKCGCVEMADCLF--WSTNSKDVVSWSSLIVGYSQNGMHNVSVSLF 349

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH-YTCIVDLLG 564
            EM+  G+ PN  T  S L   S   L+  G ++  F +       R++   + ++DL  
Sbjct: 350 CEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIR--HGLERSEFVVSALIDLYS 407

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           + G +  A + I  + L    A+W +++    ++G
Sbjct: 408 KQGLIRVA-ETIFWLTLDKDLAIWNSMVAGYAVNG 441


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/631 (36%), Positives = 343/631 (54%), Gaps = 36/631 (5%)

Query: 37  AFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLK 96
           A I     + TH+  S  ++  H       FD +  R  + +N ++  Y + G S + ++
Sbjct: 18  ALICNQPNVSTHVSLSPNKSKMHT------FDHIQNRDVYAWNLMISGYGRAGNSSEVIR 71

Query: 97  MF-LGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAM 155
            F L ML  G   PD  T+P V+KAC  +     G  +H   L  GF  D +V   LI +
Sbjct: 72  CFSLFMLSSG-LTPDYRTFPSVLKACRTVI---DGNKIHCLALKFGFMWDVYVAASLIHL 127

Query: 156 YMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP-DCAS 214
           Y  +  V  AR +FD M    + SWN +ISGY ++  AKEAL      L +G+   D  +
Sbjct: 128 YSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALT-----LSNGLRAMDSVT 182

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           VVS+L AC    +   G  IH       L   +               + + + VFDRM 
Sbjct: 183 VVSLLSACTEAGDFNRGVTIHSYSIKHGLESEL---------------LRDCQKVFDRMY 227

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
            RD+++W S+I  Y LN     A+ LFQ M+   ++P+ LT+ SL S  S L  ++  RS
Sbjct: 228 VRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRS 287

Query: 335 LHAWTIKQNLECE-VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
           +  +T+++    E + +  A++ MYAK  LV  +  VF        + WN I++G   NG
Sbjct: 288 VQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNG 347

Query: 394 LARKAVELFRQMLVE-VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
            A +A+E++  M  E  +  N  T  S+LPA +    L+Q M +H  L++ G    V V 
Sbjct: 348 FASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVV 407

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
           T L D+Y KCG LE A  +F +IP  +   V W+ +IA +G HGHGE AV LFKEM+  G
Sbjct: 408 TSLADMYGKCGRLEDALSLFYQIPRVNS--VPWNTLIACHGFHGHGEKAVMLFKEMLDEG 465

Query: 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572
           V+P+ +TF + L ACSH GL+DEG   F  M  ++       HY C+VD+ GRAG+L+ A
Sbjct: 466 VKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETA 525

Query: 573 YDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAV 632
              I++M L+P  ++WGALL AC +HGNV+LG++A++ LFE+EPE+ G +VLLS +Y++ 
Sbjct: 526 LKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASA 585

Query: 633 RRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            +W+  + +R +   KGLRK P  S +EV N
Sbjct: 586 GKWEGVDEIRSIAHGKGLRKTPGWSSMEVDN 616



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 144/505 (28%), Positives = 254/505 (50%), Gaps = 46/505 (9%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAYGH--- 59
           P + T P     V+K      A +++    ++H   +  G ++  ++ +SL+  Y     
Sbjct: 84  PDYRTFPS----VLK------ACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKA 133

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           V N RILFDEM  R    +N ++  Y Q+G + ++L +  G+  +     D+ T   ++ 
Sbjct: 134 VGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM-----DSVTVVSLLS 188

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           ACT+      G+ +H   +  G + +                ++  +KVFD M+   ++S
Sbjct: 189 ACTEAGDFNRGVTIHSYSIKHGLESEL---------------LRDCQKVFDRMYVRDLIS 233

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-V 238
           WN++I  Y  N     A+ +F  M  S ++PDC +++S+      L +I   R +    +
Sbjct: 234 WNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTL 293

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
             G   ++I   NA+V MY K G V+ AR VF+ +   DV++W ++I+GYA NG    A+
Sbjct: 294 RKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAI 353

Query: 299 GLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
            ++ +M+ EG +  N  T  S+L ACS    L++G  LH   +K  L  +V V T+L DM
Sbjct: 354 EMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADM 413

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y KC  ++ +  +F +  +  +VPWN ++A    +G   KAV LF++ML E V+P+  T 
Sbjct: 414 YGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITF 473

Query: 418 NSLLPA--YAILADLQQAMNIHCYLI---RYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
            +LL A  ++ L D  Q     C+ +    YG    ++    ++D+Y + G LE+A K  
Sbjct: 474 VTLLSACSHSGLVDEGQ----WCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFI 529

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGH 497
             + ++  D  +W  +++   +HG+
Sbjct: 530 KSMSLQ-PDASIWGALLSACRVHGN 553



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 136/481 (28%), Positives = 246/481 (51%), Gaps = 36/481 (7%)

Query: 129 LGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           +G+ +   ++ T F D+        ++ +++    K+    FD +    V +WN +ISGY
Sbjct: 1   MGMKVKRLMMFTHFSDIALICNQPNVSTHVSLSPNKSKMHTFDHIQNRDVYAWNLMISGY 60

Query: 188 FKNAYAKEALVVFD-WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
            +   + E +  F  +ML SG+ PD  +  SVL AC   + +  G  IH L        +
Sbjct: 61  GRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWD 117

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           +    +L+ +Y +  +V  AR++FD M  RD+ +W +MI+GY  +G+ + AL L      
Sbjct: 118 VYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSN---- 173

Query: 307 EGVRP-NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            G+R  +S+T+ SLLSAC+      RG ++H+++IK  LE E++ +         C    
Sbjct: 174 -GLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELLRD---------CQ--- 220

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
              +VF R   +  + WN+I+     N    +A+ LF++M +  ++P+  TL SL    +
Sbjct: 221 ---KVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILS 277

Query: 426 ILADLQQAMNIHCYLIRYG-FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
            L D++   ++  + +R G FL  + +   ++ +Y+K G ++SA  +F+ +P  + D++ 
Sbjct: 278 QLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP--NTDVIS 335

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSG-VQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
           W+ II+GY  +G    A+ ++  M + G +  N+ T+ S L ACS  G L +G+ L   +
Sbjct: 336 WNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRL 395

Query: 544 LENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
           L+N       D +  T + D+ G+ GRL++A  L   +P +     W  L+     HG+ 
Sbjct: 396 LKNGLYL---DVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGHG 451

Query: 602 E 602
           E
Sbjct: 452 E 452


>gi|302766239|ref|XP_002966540.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
 gi|300165960|gb|EFJ32567.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
          Length = 630

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/629 (32%), Positives = 348/629 (55%), Gaps = 17/629 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLF--THLRSSLVRAY------GHVSNVRILFDEM 70
           L+++   ++S+A  +++H  I+ +G      HL + L++ Y        +++ R +FD+M
Sbjct: 4   LLRRCGISRSLADGRRVHDHILATGHFLRSVHLGNLLIQMYRKCGGTSSLADARAVFDQM 63

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
            ++    ++ ++  Y Q G   +++ +F  M    +  P+       + AC+      LG
Sbjct: 64  PKKDVVSWSCIIAAYGQAGHCREAINLFQRM----DVEPNEMVIVSTLAACSGAKDLALG 119

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           +A+H R+L        FVG  L+ MY   G ++ AR VFD +    VVSW  +I+ + + 
Sbjct: 120 MAIHARILSPDLRKSVFVGTALLNMYAKCGAIEQARAVFDQIPHKDVVSWTAMITAFAQM 179

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
              ++AL   + M+++ V+P+  + V+ + AC   + ++ GR IH  V    L  +I   
Sbjct: 180 GDCRQALETLEGMIQARVQPNPVTFVAAITACSSREFLDRGRKIHAAVIDLGLHGDITIQ 239

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           NALV MY K  S  EA  VF RM +R+ V+W SMI  +A +     A+GLF  M  EG++
Sbjct: 240 NALVSMYAKGSSAEEALSVFQRMEDRNRVSWNSMIAAFAASAQSCAAMGLFHGMNLEGIK 299

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC--EVIVETALIDMYAKCNLVKLSF 368
           P+ ++   +LSACSS   L+  + +H+      +    ++ VE +L+  YAKC  ++ + 
Sbjct: 300 PDDVSFLGVLSACSSTRCLRSCKRIHSQLELAAVHSPPDLSVENSLVTAYAKCGDLEAAE 359

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           ++F R   K  V W A+L     +G   KA+EL+ +M+ + ++P+   L +++ A +++ 
Sbjct: 360 RIFQRIPGKNVVSWTAMLTAYTFHGNGSKALELYDKMVGQSIQPDSVVLLNVIYAGSLVG 419

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD---KDIVVW 485
           D+  A  +H  +    F+  +++   LI++Y++CGSLE A ++F  I  K+   +D V W
Sbjct: 420 DVGLARKLHARVASSSFMLKIQIQNALINMYTRCGSLEEARRVFDGIERKNLVARDTVTW 479

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           S ++AGY  HGH E A+ L+++M   GVQP+ VT+ S L++CSH GLL +    F  M+E
Sbjct: 480 SSLVAGYAHHGHAEYAILLYRDMHLEGVQPDSVTYVSILNSCSHAGLLAQARHFFVSMVE 539

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
           +H   +  DH+ C+VD+LGRAG +  A D++R MP +P    W  LLG C +HG+   G 
Sbjct: 540 DHCLAAWPDHWKCMVDVLGRAGFVGRAEDVVRNMPFQPDVVAWNTLLGCCKVHGDARRGA 599

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRR 634
           VAA+    + P   G+ VLLS +Y+ + R
Sbjct: 600 VAARNAVGISPGFAGSTVLLSNMYAEIGR 628



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 130/422 (30%), Positives = 208/422 (49%), Gaps = 18/422 (4%)

Query: 217 SVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDMYVKCG---SVNEARLVFDR 272
           S+L  CG  + +  GR +H+ ++A G   +++   N L+ MY KCG   S+ +AR VFD+
Sbjct: 3   SLLRRCGISRSLADGRRVHDHILATGHFLRSVHLGNLLIQMYRKCGGTSSLADARAVFDQ 62

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
           M ++DVV+W+ +I  Y   G  R A+ LFQ M  E   PN + I S L+ACS    L  G
Sbjct: 63  MPKKDVVSWSCIIAAYGQAGHCREAINLFQRMDVE---PNEMVIVSTLAACSGAKDLALG 119

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
            ++HA  +  +L   V V TAL++MYAKC  ++ +  VF +   K  V W A++      
Sbjct: 120 MAIHARILSPDLRKSVFVGTALLNMYAKCGAIEQARAVFDQIPHKDVVSWTAMITAFAQM 179

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
           G  R+A+E    M+   V+PN  T  + + A +    L +   IH  +I  G    + + 
Sbjct: 180 GDCRQALETLEGMIQARVQPNPVTFVAAITACSSREFLDRGRKIHAAVIDLGLHGDITIQ 239

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
             L+ +Y+K  S E A  +F    ++D++ V W+ +IA +        A+ LF  M   G
Sbjct: 240 NALVSMYAKGSSAEEALSVFQR--MEDRNRVSWNSMIAAFAASAQSCAAMGLFHGMNLEG 297

Query: 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLD 570
           ++P++V+F   L ACS    L       +  LE     S  D      +V    + G L+
Sbjct: 298 IKPDDVSFLGVLSACSSTRCL-RSCKRIHSQLELAAVHSPPDLSVENSLVTAYAKCGDLE 356

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL--EPENPGNYVLLSKL 628
            A  + + +P K     W A+L A   HGN   G  A +   ++  +   P + VLL+ +
Sbjct: 357 AAERIFQRIPGKNV-VSWTAMLTAYTFHGN---GSKALELYDKMVGQSIQPDSVVLLNVI 412

Query: 629 YS 630
           Y+
Sbjct: 413 YA 414


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/565 (35%), Positives = 323/565 (57%), Gaps = 33/565 (5%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH-SVVSWNTLISGYFKNA 191
           LH ++L T     + +   ++++Y N   +  +  +F+++    + ++W ++I  Y  + 
Sbjct: 27  LHAQILRTSLPSPSLLST-ILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSHG 85

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
               +L  F  ML SG  PD     SVL +C  +K++  G  +H  +    +G ++   N
Sbjct: 86  LFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCN 145

Query: 252 ALVDMYVKCGSVNEA-----------------------------RLVFDRMSERDVVTWT 282
           AL++MY K  S+ E                              R VF+ M +RD+V+W 
Sbjct: 146 ALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWN 205

Query: 283 SMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           ++I+G A NG   +AL + + M    +RP+S T+ S+L   +    L +G+ +H + I+ 
Sbjct: 206 TVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRN 265

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
             + +V + ++LIDMYAKC  V  S +VF    +   + WN+I+AGCV NG+  + ++ F
Sbjct: 266 GYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFF 325

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
           +QML+  ++PN  + +S++PA A L  L     +H Y+IR  F   V +++ L+D+Y+KC
Sbjct: 326 QQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKC 385

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G++ +A  IF ++ +   D+V W+ +I GY +HGH   A+SLFK M   GV+PN V F +
Sbjct: 386 GNIRTARWIFDKMEL--YDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMA 443

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
            L ACSH GL+DE    FN M ++++     +HY  + DLLGR GRL+EAY+ I  M ++
Sbjct: 444 VLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIE 503

Query: 583 PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642
           PT +VW  LL AC +H N+EL E  +K LF ++P+N G YVLLS +YSA  RWKDA  +R
Sbjct: 504 PTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLR 563

Query: 643 DVMDEKGLRKAPAHSLIEVRNILTA 667
             M +KG++K PA S IE++N + A
Sbjct: 564 IAMRDKGMKKKPACSWIEIKNKVHA 588



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 150/544 (27%), Positives = 267/544 (49%), Gaps = 44/544 (8%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEM- 70
           T +L   L+Q  ++ KS +  KQLHA I+ +      L S+++  Y   SN+ +L D + 
Sbjct: 4   TQNLCKTLLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLSTILSIY---SNLNLLHDSLL 60

Query: 71  ------SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
                 S  ++  + ++++ Y  +G    SL  F+ ML  G+Y PD+  +P V+K+CT +
Sbjct: 61  IFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKY-PDHNVFPSVLKSCTLM 119

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK--------------------- 163
              + G ++HG ++  G   D +  N L+ MY  F  ++                     
Sbjct: 120 KDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKK 179

Query: 164 --------AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASV 215
                   + RKVF+ M +  +VSWNT+ISG  +N   ++AL++   M  + + PD  ++
Sbjct: 180 EKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTL 239

Query: 216 VSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE 275
            SVLP       +  G+ IH          ++   ++L+DMY KC  V+++  VF  + +
Sbjct: 240 SSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQ 299

Query: 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
            D ++W S+I G   NG     L  FQ M    ++PN ++  S++ AC+ L  L  G+ L
Sbjct: 300 HDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQL 359

Query: 336 HAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLA 395
           H + I+   +  V + +AL+DMYAKC  ++ +  +F +      V W A++ G   +G A
Sbjct: 360 HGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHA 419

Query: 396 RKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTG 454
             A+ LF++M VE V+PN     ++L A +    + +A      + + Y  +  +E    
Sbjct: 420 YDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAA 479

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           + D+  + G LE A++  S++ I+     VWS ++A   +H + E A  + K++    V 
Sbjct: 480 VADLLGRVGRLEEAYEFISDMHIEPTG-SVWSTLLAACRVHKNIELAEKVSKKLFT--VD 536

Query: 515 PNEV 518
           P  +
Sbjct: 537 PQNI 540



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 206/385 (53%), Gaps = 27/385 (7%)

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
           ++ ++R +F+ M +R    +NTV+   AQNG   D+L M   M    +  PD++T   V+
Sbjct: 185 YLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGN-ADLRPDSFTLSSVL 243

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
               +      G  +HG  +  G+D D F+G+ LI MY     V  + +VF  + +H  +
Sbjct: 244 PIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGI 303

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           SWN++I+G  +N    E L  F  ML + ++P+  S  S++PAC +L  + +G+ +H  +
Sbjct: 304 SWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYI 363

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
              R   N+   +ALVDMY KCG++  AR +FD+M   D+V+WT+MI GYAL+G   +A+
Sbjct: 364 IRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAI 423

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW----TIKQNLECEVIVE--T 352
            LF+ M+ EGV+PN +   ++L+ACS       G    AW    ++ Q+      +E   
Sbjct: 424 SLFKRMEVEGVKPNYVAFMAVLTACS-----HAGLVDEAWKYFNSMTQDYRIIPGLEHYA 478

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVP-WNAILAGC-VHNGLARKAVELFRQMLVEV- 409
           A+ D+  +   ++ +++  +    + T   W+ +LA C VH     K +EL  ++  ++ 
Sbjct: 479 AVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVH-----KNIELAEKVSKKLF 533

Query: 410 -VEPNDATLNSLLPAYAILADLQQA 433
            V+P +      + AY +L+++  A
Sbjct: 534 TVDPQN------IGAYVLLSNIYSA 552


>gi|125559296|gb|EAZ04832.1| hypothetical protein OsI_27010 [Oryza sativa Indica Group]
          Length = 700

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/640 (34%), Positives = 347/640 (54%), Gaps = 20/640 (3%)

Query: 32  TKQLHAFIITSGPLF-THLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
            ++LHA ++  G    T L + LVRAY   G V++   +FD M  R+SF +N V+K    
Sbjct: 67  ARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDGMPRRNSFAWNAVIKGLVD 126

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
            G   ++L+MF GM+  G    D +TYP VIKAC       LG    GR +    + D  
Sbjct: 127 AGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACA-----ALGAVAQGRKVWEMVEADIA 181

Query: 148 VGNC---------LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
            GN          L+ M+   G +  AR VF++M    + +W  +I G   +    E + 
Sbjct: 182 SGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAMIGGTVHSGNWLEVVD 241

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           +F+ M   G   D     +V+ ACG   E+++G  +H          +I   NALVDMY 
Sbjct: 242 LFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGASGDIYVSNALVDMYC 301

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           KCG V  A  +F   + +DVV+W+S+I GY+ NG    ++ LF  M   G+ PNS T+ S
Sbjct: 302 KCGCVEMADCLFWSTNSKDVVSWSSLIVGYSQNGMHNVSVSLFCEMISLGINPNSSTLAS 361

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           +L   S L  ++ G+ +H ++I+  LE    V +ALID+Y+K  L++++  +F  T  K 
Sbjct: 362 ILPCLSVLKLIRSGKEIHCFSIRHGLERSEFVVSALIDLYSKQGLIRVAETIFWLTLDKD 421

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
              WN+++AG   NG +  A    R +    ++P+  T+ S+LP       L Q   +H 
Sbjct: 422 LAIWNSMVAGYAVNGYSDSAFCALRLLQKVGLKPDHVTVVSVLPLCNQHHMLIQGKELHA 481

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           Y+I+Y   SV  V+  L+D+Y KCG LE A ++F    + +++ V ++++I+ +G H H 
Sbjct: 482 YVIKYCINSVCSVNNALLDMYCKCGFLEVAKEVFQ--LMTERNTVTYNILISSFGKHNHE 539

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
           + A+S F  M + G+ P++VTF + L  CSH GL+D+GL L++ ML ++      +HY+C
Sbjct: 540 DQALSFFDLMKRDGIAPDKVTFVALLSCCSHAGLIDKGLHLYHSMLHDYNISPEKEHYSC 599

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
           IVDL  R G+LDEA+  +  M  +P   V G LL AC +H  +++ E+  K +FE  P +
Sbjct: 600 IVDLYSRCGKLDEAWCFMSNMAEEPEIDVLGGLLAACRVHNRMDIAELVGKRIFEQNPND 659

Query: 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSL 658
           PG ++LLS +Y+    W D   +R ++ E+ L+K   +SL
Sbjct: 660 PGYHILLSNIYADAGMWSDVTRIRTMIQERNLKKETGNSL 699



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/395 (28%), Positives = 182/395 (46%), Gaps = 18/395 (4%)

Query: 213 ASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR 272
           AS++  L +C   +E    R +H  V  G  G        LV  Y K G V  A  VFD 
Sbjct: 52  ASLLLRLQSCPDFQE---ARRLHAAVLVGGHGHGTVLVAQLVRAYAKLGDVAHALRVFDG 108

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKR 331
           M  R+   W ++I G    G    AL +F  M  +G V  +  T   ++ AC++L  + +
Sbjct: 109 MPRRNSFAWNAVIKGLVDAGRFSEALEMFWGMVNDGSVAVDGFTYPPVIKACAALGAVAQ 168

Query: 332 GRSLHAWTIKQ------NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           GR +  W + +      N    V V+ AL+DM+AKC  +  +  VF     +    W A+
Sbjct: 169 GRKV--WEMVEADIASGNARPNVFVQCALVDMFAKCGCLDEARNVFESMQVRDLAAWTAM 226

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           + G VH+G   + V+LF  M  E    +     +++ A     +LQ    +H   ++ G 
Sbjct: 227 IGGTVHSGNWLEVVDLFNHMRSEGFGVDSLIAATVISACGRAGELQVGTALHGCAVKSGA 286

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
              + VS  L+D+Y KCG +E A  +F       KD+V WS +I GY  +G    +VSLF
Sbjct: 287 SGDIYVSNALVDMYCKCGCVEMADCLF--WSTNSKDVVSWSSLIVGYSQNGMHNVSVSLF 344

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH-YTCIVDLLG 564
            EM+  G+ PN  T  S L   S   L+  G ++  F +       R++   + ++DL  
Sbjct: 345 CEMISLGINPNSSTLASILPCLSVLKLIRSGKEIHCFSIR--HGLERSEFVVSALIDLYS 402

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           + G +  A + I  + L    A+W +++    ++G
Sbjct: 403 KQGLIRVA-ETIFWLTLDKDLAIWNSMVAGYAVNG 436


>gi|449522919|ref|XP_004168473.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like, partial [Cucumis sativus]
          Length = 670

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/627 (34%), Positives = 341/627 (54%), Gaps = 40/627 (6%)

Query: 39  IITSGPLF--THLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHD 93
           II + P++    L + LV AY   G + N R +FDE+ +  + L N ++  Y QN   +D
Sbjct: 79  IIITNPIYGDQFLVAKLVAAYSSLGCLENARKVFDEIPQPKTVLCNAMVNGYLQNERYND 138

Query: 94  SLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLI 153
            +++ L M+       D+YT    +KAC  L   ++G+ + G  +  G     F+G+ + 
Sbjct: 139 CIEL-LKMMSRCHLEFDSYTCNFALKACMFLLDYEMGMEVIGLAVCKGLAGGRFLGSSI- 196

Query: 154 AMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCA 213
              +NF E                        G F+  Y      +F  ML + +EP   
Sbjct: 197 ---LNFLE------------------------GLFREGYN-----LFLDMLYNKIEPSAV 224

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           +++S++ +CG ++ +  G+ +H  V G  + ++      L+DMY K G V  AR +F+ M
Sbjct: 225 TMISLIQSCGEMRNLTFGKCMHGFVLGFGMSRDTRVLTTLIDMYCKSGDVESARWIFENM 284

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
             R++V+W  MI+GY  NG +   L LFQ +  + V  +S T+ SL+  CS    L  G+
Sbjct: 285 PSRNLVSWNVMISGYVQNGLLVETLRLFQKLIMDDVGFDSGTVVSLIQLCSRTADLDGGK 344

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            LH +  ++ L+  +++ TA++D+YAKC  +  +  VF R   K  + W A+L G   NG
Sbjct: 345 ILHGFIYRRGLDLNLVLPTAIVDLYAKCGSLAYASSVFERMKNKNVISWTAMLVGLAQNG 404

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
            AR A++LF QM  E V  N  TL SL+    +L  L++  ++H  L R+ F S V V T
Sbjct: 405 HARDALKLFDQMQNERVTFNALTLVSLVYCCTLLGLLREGRSVHATLTRFHFASEVVVMT 464

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            LID+Y+KC  + SA  +F +  +  KD+++++ +I+GYGMHG G  A+ ++  M + G+
Sbjct: 465 ALIDMYAKCSKINSAEMVF-KYGLTPKDVILYNSMISGYGMHGLGHKALCVYHRMNREGL 523

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
           QPNE TF S L ACSH GL++EG+ LF  M+++H T      Y CIVDLL RAGRL +A 
Sbjct: 524 QPNESTFVSLLSACSHSGLVEEGIALFQNMVKDHNTTPTDKLYACIVDLLSRAGRLRQAE 583

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633
           +LI  MP  PT  +   LL  C++H ++ELG   A  L  LE  NP  Y+ LS +Y+   
Sbjct: 584 ELINQMPFTPTSGILETLLNGCLLHKDIELGVKLADRLLSLESRNPSIYITLSNIYAKAS 643

Query: 634 RWKDAENVRDVMDEKGLRKAPAHSLIE 660
           RW   + VR +M E+ ++K P +S IE
Sbjct: 644 RWDSVKYVRGLMMEQEIKKIPGYSSIE 670



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 143/305 (46%), Gaps = 9/305 (2%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMS 71
           V+ L+Q  + T  + G K LH FI   G  L   L +++V  Y   G ++    +F+ M 
Sbjct: 327 VVSLIQLCSRTADLDGGKILHGFIYRRGLDLNLVLPTAIVDLYAKCGSLAYASSVFERMK 386

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
            ++   +  ++   AQNG + D+LK+F   ++      +  T   ++  CT L   + G 
Sbjct: 387 NKNVISWTAMLVGLAQNGHARDALKLF-DQMQNERVTFNALTLVSLVYCCTLLGLLREGR 445

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD-AMWEHSVVSWNTLISGYFKN 190
           ++H  +    F  +  V   LI MY    ++ +A  VF   +    V+ +N++ISGY  +
Sbjct: 446 SVHATLTRFHFASEVVVMTALIDMYAKCSKINSAEMVFKYGLTPKDVILYNSMISGYGMH 505

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAA 249
               +AL V+  M + G++P+ ++ VS+L AC +   +E G  +   +V           
Sbjct: 506 GLGHKALCVYHRMNREGLQPNESTFVSLLSACSHSGLVEEGIALFQNMVKDHNTTPTDKL 565

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVV-TWTSMINGYALNGDVRNALGLF-QLMQFE 307
           +  +VD+  + G + +A  + ++M          +++NG  L+ D+   + L  +L+  E
Sbjct: 566 YACIVDLLSRAGRLRQAEELINQMPFTPTSGILETLLNGCLLHKDIELGVKLADRLLSLE 625

Query: 308 GVRPN 312
              P+
Sbjct: 626 SRNPS 630


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/648 (33%), Positives = 347/648 (53%), Gaps = 78/648 (12%)

Query: 19  LVQQYAATKSIAGTKQLHAFIIT-SGPLFTHLRSSLVRAY---GHVSNVRILFDEMSERS 74
           ++Q  A  KS+   K++H+ I + S  +   L   LV  Y   G +   R +FD M +++
Sbjct: 105 VLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKN 164

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
            +L+N ++  YA+ G   +S+ +F  M+  G                           + 
Sbjct: 165 VYLWNFMVSEYAKIGDFKESICLFKIMVEKG---------------------------IE 197

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           G+                          ++A ++FD + +  V+SWN++ISGY  N   +
Sbjct: 198 GK------------------------RPESASELFDKLCDRDVISWNSMISGYVSNGLTE 233

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
             L ++  M+  G++ D A+++SVL  C     + +G+ +H L       + I   N L+
Sbjct: 234 RGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLL 293

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           DMY KCG ++ A  VF++M ER+VV+WTSMI GY  +G    A+ L Q M+ EGV+ + +
Sbjct: 294 DMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVV 353

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
            I S+L AC+    L  G+ +H +    N+   + V  AL+DMYAKC  ++ +  VF+  
Sbjct: 354 AITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTM 413

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
             K  + WN                      +V  ++P+  T+  +LPA A L+ L++  
Sbjct: 414 VVKDIISWNT---------------------MVGELKPDSRTMACILPACASLSALERGK 452

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            IH Y++R G+ S   V+  L+D+Y KCG L  A  +F  IP   KD+V W+V+IAGYGM
Sbjct: 453 EIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP--SKDLVSWTVMIAGYGM 510

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           HG+G  A++ F EM  +G++P+EV+F S L+ACSH GLL++G   F  M  +     + +
Sbjct: 511 HGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLE 570

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HY C+VDLL R G L +AY  I T+P+ P   +WGALL  C I+ ++EL E  A+ +FEL
Sbjct: 571 HYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFEL 630

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           EPEN G YVLL+ +Y+   + ++ + +R+ + +KGLRK P  S IE++
Sbjct: 631 EPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIK 678


>gi|224118338|ref|XP_002317794.1| predicted protein [Populus trichocarpa]
 gi|222858467|gb|EEE96014.1| predicted protein [Populus trichocarpa]
          Length = 852

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 235/743 (31%), Positives = 376/743 (50%), Gaps = 117/743 (15%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           KQ+HA  I +G      + + L++ Y   G + +   LF+ M  R+   +  ++ +Y  +
Sbjct: 79  KQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLFETMPMRNLHSWKAILSVYLDH 138

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   ++  +F  +L+      D + +P+V KAC+ L   +LG  LHG V+   F ++ +V
Sbjct: 139 GLFEEAFLLF-QVLQFDGVELDFFVFPLVFKACSGLGSVELGRQLHGLVIKFRFCLNIYV 197

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEH--------------------------------- 175
            N LI MY   G +  A+KV   M E                                  
Sbjct: 198 SNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGMVYEALEFLEKMKSLDY 257

Query: 176 ---SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
              +VVSW+ +I G+ +N Y +EA+ +   M   G+ P+  ++  VLPAC  L+ +++G+
Sbjct: 258 SMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLAGVLPACARLQRLDLGK 317

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGS------------------------------ 262
            +H  +       N    NALVD+Y +CG                               
Sbjct: 318 QLHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFSVKNVLSCNTMIVGYCESG 377

Query: 263 -VNEARLVFDRMS----ERDVVTWTSMINGYALNGDVRNALGLFQ-LMQFEGVRPNSLTI 316
            V++A+ +FD M     ER +++W S+I+GY  N     A  +FQ ++  EG+ P+S T+
Sbjct: 378 DVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMFQNMLMEEGIEPDSFTL 437

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
           GS+L+AC+    L++G+ +HA  I + L+ +  V  AL++MY+KC  +  + QV      
Sbjct: 438 GSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSKCQDLTAA-QVAFDEVM 496

Query: 377 KKTVP------------------------------------WNAILAGCVHNGLARKAVE 400
           +K VP                                    WN+ILAG V N      ++
Sbjct: 497 EKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWNSILAGLVENRQLDLTMQ 556

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
           LF +M +  + P+  T+  +LPA + LA L++    H + I+ G+ + V +   L+D+Y+
Sbjct: 557 LFSEMQISKLRPDIYTVGIILPACSRLATLERGKQAHAHSIKCGYDTDVHIGAALVDMYA 616

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           KCGSL+ A   +  I   + ++V  + ++    MHGHGE  +SLF+ M+  G  P+ VTF
Sbjct: 617 KCGSLKYAQLAYDRI--SNPNLVSHNAMLTACAMHGHGEEGISLFQTMLALGFIPDHVTF 674

Query: 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
            S L +C H G ++ G + F+ M   +       HYT +VDLL R+G+L EAY+LI+ MP
Sbjct: 675 LSVLSSCVHVGSVETGCEFFDLM-GYYNVKPTLKHYTSMVDLLSRSGQLHEAYELIKKMP 733

Query: 581 LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAEN 640
           ++    +WGALLG CV HGN+ELGE+AA+ L ELEP N GNYVLL+ L++  RRW D   
Sbjct: 734 VECDSVLWGALLGGCVTHGNIELGEIAAERLIELEPNNSGNYVLLANLHAYARRWTDLAR 793

Query: 641 VRDVMDEKGLRKAPAHSLIEVRN 663
           VR +M ++G+ K+P  S IE +N
Sbjct: 794 VRGMMKDRGMHKSPGCSWIEDKN 816



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 172/600 (28%), Positives = 259/600 (43%), Gaps = 118/600 (19%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           Y  V+ +C      KLG  +H   + TGFD D F+   L+ MY   G +K A  +F+ M 
Sbjct: 65  YASVLDSCK---CPKLGKQVHAHTIKTGFDADGFIDTKLLQMYARCGLLKDADFLFETMP 121

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
             ++ SW  ++S Y  +   +EA ++F  +   GVE D      V  AC  L  +E+GR 
Sbjct: 122 MRNLHSWKAILSVYLDHGLFEEAFLLFQVLQFDGVELDFFVFPLVFKACSGLGSVELGRQ 181

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD---------------- 277
           +H LV   R   NI   NAL+DMY KCGS+++A+ V  +M ERD                
Sbjct: 182 LHGLVIKFRFCLNIYVSNALIDMYGKCGSLDDAKKVLVKMPERDSVTWNSVITACAANGM 241

Query: 278 --------------------VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
                               VV+W+++I G+A NG    A+ +   MQ EG+ PN+ T+ 
Sbjct: 242 VYEALEFLEKMKSLDYSMPNVVSWSAVIGGFAQNGYDEEAIEMLFRMQVEGLVPNAQTLA 301

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
            +L AC+ L  L  G+ LH +  + +     +V  AL+D+Y +C  +  + ++F + S K
Sbjct: 302 GVLPACARLQRLDLGKQLHGYITRHDFISNPVVVNALVDVYRRCGDMGGAAKIFLKFSVK 361

Query: 378 KT-----------------------------------VPWNAILAGCVHNGLARKAVELF 402
                                                + WN+I++G V N +  +A  +F
Sbjct: 362 NVLSCNTMIVGYCESGDVSKAKELFDCMDVLGIERGLISWNSIISGYVRNFMFDEAFSMF 421

Query: 403 RQMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
           + ML+E  +EP+  TL S+L A A    L+Q   IH   I  G  S   V   L+++YSK
Sbjct: 422 QNMLMEEGIEPDSFTLGSVLTACADTISLRQGKEIHAQAIVKGLQSDTFVGGALVEMYSK 481

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
           C  L +A   F E  + +KD+  W+ +I+GY      E    L ++M   G  PN  T+ 
Sbjct: 482 CQDLTAAQVAFDE--VMEKDVPTWNALISGYTRSNQIERIQYLLEKMKGDGYHPNIYTWN 539

Query: 522 SALHACSHGGLLDEGLDLFNFMLENH------------QTCSR-----------ADHYTC 558
           S L        LD  + LF+ M  +               CSR           A    C
Sbjct: 540 SILAGLVENRQLDLTMQLFSEMQISKLRPDIYTVGIILPACSRLATLERGKQAHAHSIKC 599

Query: 559 -----------IVDLLGRAGRLDE---AYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
                      +VD+  + G L     AYD I      P      A+L AC +HG+ E G
Sbjct: 600 GYDTDVHIGAALVDMYAKCGSLKYAQLAYDRISN----PNLVSHNAMLTACAMHGHGEEG 655


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/649 (34%), Positives = 358/649 (55%), Gaps = 10/649 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAYGH---VSNVRILFDEMSER- 73
           L++  A  + I    +LH+ ++  G   T  + ++LV  Y     +S  R LFD   E+ 
Sbjct: 188 LLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG 247

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
            + L+N+++  Y+ +G S ++L++F  M   G   P++YT    + AC   ++ KLG  +
Sbjct: 248 DAVLWNSILSSYSTSGKSLETLELFREMHMTGP-APNSYTIVSALTACDGFSYAKLGKEI 306

Query: 134 HGRVLITG-FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           H  VL +     + +V N LIAMY   G++  A ++   M    VV+WN+LI GY +N  
Sbjct: 307 HASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLM 366

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            KEAL  F  M+ +G + D  S+ S++ A G L  +  G  +H  V       N+   N 
Sbjct: 367 YKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNT 426

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+DMY KC         F RM ++D+++WT++I GYA N     AL LF+ +  + +  +
Sbjct: 427 LIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEID 486

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            + +GS+L A S L  +   + +H   +++ L  + +++  L+D+Y KC  +  + +VF 
Sbjct: 487 EMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRVFE 545

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
               K  V W ++++    NG   +AVELFR+M+   +  +   L  +L A A L+ L +
Sbjct: 546 SIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNK 605

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              IHCYL+R GF     ++  ++D+Y+ CG L+SA  +F  I  + K ++ ++ +I  Y
Sbjct: 606 GREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRI--ERKGLLQYTSMINAY 663

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
           GMHG G+ AV LF +M    V P+ ++F + L+ACSH GLLDEG      M   ++    
Sbjct: 664 GMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPW 723

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
            +HY C+VD+LGRA  + EA++ ++ M  +PT  VW ALL AC  H   E+GE+AA+ L 
Sbjct: 724 PEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLL 783

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           ELEP+NPGN VL+S +++   RW D E VR  M   G+ K P  S IE+
Sbjct: 784 ELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEM 832



 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 191/642 (29%), Positives = 317/642 (49%), Gaps = 48/642 (7%)

Query: 27  KSIAGTKQLHAFIITSGPLFT--HLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTV 81
           ++++  +QLH+ I  + P F    L   LV  YG    + +   +FDEM +R++F +NT+
Sbjct: 94  RAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTM 153

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           +  Y  NG    +L ++  M R+        ++P ++KAC  L   + G  LH  ++  G
Sbjct: 154 IGAYVSNGEPASALALYWNM-RVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLG 212

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH-SVVSWNTLISGYFKNAYAKEALVVF 200
           +    F+ N L++MY    ++ AAR++FD   E    V WN+++S Y  +  + E L +F
Sbjct: 213 YHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELF 272

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVDMYVK 259
             M  +G  P+  ++VS L AC      ++G+ IH  ++        +   NAL+ MY +
Sbjct: 273 REMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTR 332

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
           CG + +A  +  +M+  DVVTW S+I GY  N   + AL  F  M   G + + +++ S+
Sbjct: 333 CGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSI 392

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           ++A   L  L  G  LHA+ IK   +  + V   LIDMY+KCNL     + F R   K  
Sbjct: 393 IAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDL 452

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           + W  ++AG   N    +A+ELFR +  + +E ++  L S+L A ++L  +     IHC+
Sbjct: 453 ISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCH 512

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           ++R G L  V +   L+D+Y KC ++  A ++F    IK KD+V W+ +I+   ++G+  
Sbjct: 513 ILRKGLLDTV-IQNELVDVYGKCRNMGYATRVFES--IKGKDVVSWTSMISSSALNGNES 569

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF------NFMLENHQTCSRA 553
            AV LF+ MV++G+  + V     L A +    L++G ++        F LE     +  
Sbjct: 570 EAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVV 629

Query: 554 DHYTC---------IVDLLGRAGRLD------------------EAYDLIRTMPLKPTHA 586
           D Y C         + D + R G L                   E +D +R   + P H 
Sbjct: 630 DMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHI 689

Query: 587 VWGALLGACVIHGNVELGEVAAKWL---FELEPENPGNYVLL 625
            + ALL AC   G ++ G    K +   +ELEP  P +YV L
Sbjct: 690 SFLALLYACSHAGLLDEGRGFLKIMEHEYELEPW-PEHYVCL 730



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 149/516 (28%), Positives = 258/516 (50%), Gaps = 36/516 (6%)

Query: 102 LRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT--GFDMDTFVGNCLIAMYMNF 159
           L + E N     +  V++ C        G  LH R+  T   F++D   G  L+ MY   
Sbjct: 71  LDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGK-LVFMYGKC 129

Query: 160 GEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVL 219
           G +  A KVFD M + +  +WNT+I  Y  N     AL ++  M   GV    +S  ++L
Sbjct: 130 GSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALL 189

Query: 220 PACGYLKEIEMGRMIHELVAGGRLGKNIAAW--NALVDMYVKCGSVNEARLVFDRMSER- 276
            AC  L++I  G  +H L+   +LG +   +  NALV MY K   ++ AR +FD   E+ 
Sbjct: 190 KACAKLRDIRSGSELHSLLV--KLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG 247

Query: 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
           D V W S+++ Y+ +G     L LF+ M   G  PNS TI S L+AC    Y K G+ +H
Sbjct: 248 DAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIH 307

Query: 337 AWTIKQNL-ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLA 395
           A  +K +    E+ V  ALI MY +C  +  + ++  + +    V WN+++ G V N + 
Sbjct: 308 ASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMY 367

Query: 396 RKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGL 455
           ++A+E F  M+    + ++ ++ S++ A   L++L   M +H Y+I++G+ S ++V   L
Sbjct: 368 KEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTL 427

Query: 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP 515
           ID+YSKC       + F  + + DKD++ W+ +IAGY  +     A+ LF+++ +  ++ 
Sbjct: 428 IDMYSKCNLTCYMGRAF--LRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEI 485

Query: 516 NEVTFTSALHACS-----------HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           +E+   S L A S           H  +L +G  L + +++N            +VD+ G
Sbjct: 486 DEMILGSILRASSVLKSMLIVKEIHCHILRKG--LLDTVIQNE-----------LVDVYG 532

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           +   +  A  +  ++  K     W +++ +  ++GN
Sbjct: 533 KCRNMGYATRVFESIKGKDV-VSWTSMISSSALNGN 567


>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 884

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/649 (34%), Positives = 358/649 (55%), Gaps = 10/649 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAYGH---VSNVRILFDEMSER- 73
           L++  A  + I    +LH+ ++  G   T  + ++LV  Y     +S  R LFD   E+ 
Sbjct: 188 LLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG 247

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
            + L+N+++  Y+ +G S ++L++F  M   G   P++YT    + AC   ++ KLG  +
Sbjct: 248 DAVLWNSILSSYSTSGKSLETLELFREMHMTGP-APNSYTIVSALTACDGFSYAKLGKEI 306

Query: 134 HGRVLITG-FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           H  VL +     + +V N LIAMY   G++  A ++   M    VV+WN+LI GY +N  
Sbjct: 307 HASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLM 366

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            KEAL  F  M+ +G + D  S+ S++ A G L  +  G  +H  V       N+   N 
Sbjct: 367 YKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNT 426

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+DMY KC         F RM ++D+++WT++I GYA N     AL LF+ +  + +  +
Sbjct: 427 LIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEID 486

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            + +GS+L A S L  +   + +H   +++ L  + +++  L+D+Y KC  +  + +VF 
Sbjct: 487 EMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRVFE 545

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
               K  V W ++++    NG   +AVELFR+M+   +  +   L  +L A A L+ L +
Sbjct: 546 SIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNK 605

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              IHCYL+R GF     ++  ++D+Y+ CG L+SA  +F  I  + K ++ ++ +I  Y
Sbjct: 606 GREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRI--ERKGLLQYTSMINAY 663

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
           GMHG G+ AV LF +M    V P+ ++F + L+ACSH GLLDEG      M   ++    
Sbjct: 664 GMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPW 723

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
            +HY C+VD+LGRA  + EA++ ++ M  +PT  VW ALL AC  H   E+GE+AA+ L 
Sbjct: 724 PEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLL 783

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           ELEP+NPGN VL+S +++   RW D E VR  M   G+ K P  S IE+
Sbjct: 784 ELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEM 832



 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 191/642 (29%), Positives = 317/642 (49%), Gaps = 48/642 (7%)

Query: 27  KSIAGTKQLHAFIITSGPLFT--HLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTV 81
           ++++  +QLH+ I  + P F    L   LV  YG    + +   +FDEM +R++F +NT+
Sbjct: 94  RAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTM 153

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           +  Y  NG    +L ++  M R+        ++P ++KAC  L   + G  LH  ++  G
Sbjct: 154 IGAYVSNGEPASALALYWNM-RVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLG 212

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH-SVVSWNTLISGYFKNAYAKEALVVF 200
           +    F+ N L++MY    ++ AAR++FD   E    V WN+++S Y  +  + E L +F
Sbjct: 213 YHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELF 272

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVDMYVK 259
             M  +G  P+  ++VS L AC      ++G+ IH  ++        +   NAL+ MY +
Sbjct: 273 REMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTR 332

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
           CG + +A  +  +M+  DVVTW S+I GY  N   + AL  F  M   G + + +++ S+
Sbjct: 333 CGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSI 392

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           ++A   L  L  G  LHA+ IK   +  + V   LIDMY+KCNL     + F R   K  
Sbjct: 393 IAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDL 452

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           + W  ++AG   N    +A+ELFR +  + +E ++  L S+L A ++L  +     IHC+
Sbjct: 453 ISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCH 512

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           ++R G L  V +   L+D+Y KC ++  A ++F    IK KD+V W+ +I+   ++G+  
Sbjct: 513 ILRKGLLDTV-IQNELVDVYGKCRNMGYATRVFES--IKGKDVVSWTSMISSSALNGNES 569

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF------NFMLENHQTCSRA 553
            AV LF+ MV++G+  + V     L A +    L++G ++        F LE     +  
Sbjct: 570 EAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVV 629

Query: 554 DHYTC---------IVDLLGRAGRLD------------------EAYDLIRTMPLKPTHA 586
           D Y C         + D + R G L                   E +D +R   + P H 
Sbjct: 630 DMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHI 689

Query: 587 VWGALLGACVIHGNVELGEVAAKWL---FELEPENPGNYVLL 625
            + ALL AC   G ++ G    K +   +ELEP  P +YV L
Sbjct: 690 SFLALLYACSHAGLLDEGRGFLKIMEHEYELEPW-PEHYVCL 730



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 149/516 (28%), Positives = 258/516 (50%), Gaps = 36/516 (6%)

Query: 102 LRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT--GFDMDTFVGNCLIAMYMNF 159
           L + E N     +  V++ C        G  LH R+  T   F++D   G  L+ MY   
Sbjct: 71  LDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGK-LVFMYGKC 129

Query: 160 GEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVL 219
           G +  A KVFD M + +  +WNT+I  Y  N     AL ++  M   GV    +S  ++L
Sbjct: 130 GSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALL 189

Query: 220 PACGYLKEIEMGRMIHELVAGGRLGKNIAAW--NALVDMYVKCGSVNEARLVFDRMSER- 276
            AC  L++I  G  +H L+   +LG +   +  NALV MY K   ++ AR +FD   E+ 
Sbjct: 190 KACAKLRDIRSGSELHSLLV--KLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG 247

Query: 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
           D V W S+++ Y+ +G     L LF+ M   G  PNS TI S L+AC    Y K G+ +H
Sbjct: 248 DAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIH 307

Query: 337 AWTIKQNL-ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLA 395
           A  +K +    E+ V  ALI MY +C  +  + ++  + +    V WN+++ G V N + 
Sbjct: 308 ASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMY 367

Query: 396 RKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGL 455
           ++A+E F  M+    + ++ ++ S++ A   L++L   M +H Y+I++G+ S ++V   L
Sbjct: 368 KEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTL 427

Query: 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP 515
           ID+YSKC       + F  + + DKD++ W+ +IAGY  +     A+ LF+++ +  ++ 
Sbjct: 428 IDMYSKCNLTCYMGRAF--LRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEI 485

Query: 516 NEVTFTSALHACS-----------HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           +E+   S L A S           H  +L +G  L + +++N            +VD+ G
Sbjct: 486 DEMILGSILRASSVLKSMLIVKEIHCHILRKG--LLDTVIQNE-----------LVDVYG 532

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           +   +  A  +  ++  K     W +++ +  ++GN
Sbjct: 533 KCRNMGYATRVFESIKGKDV-VSWTSMISSSALNGN 567


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/549 (36%), Positives = 320/549 (58%), Gaps = 5/549 (0%)

Query: 116 IVIKACTDLAWRKLGIALHGRVLI-TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
           ++++AC      ++G  LH  V   T F  D  +   +I MY   G    +R VFD +  
Sbjct: 110 VLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRR 169

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRM 233
            ++  WN ++S Y +N   ++A+ +F  ++  +  +PD  ++  V+ AC  L ++ +G++
Sbjct: 170 KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI 229

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA-RLVFDRMSERDVVTWTSMINGYALNG 292
           IH +     L  ++   NAL+ MY KCG V EA + VFD M  + V +W +++ GYA N 
Sbjct: 230 IHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNS 289

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
           D R AL L+  M   G+ P+  TIGSLL ACS +  L  G  +H + ++  L  +  +  
Sbjct: 290 DPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGI 349

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           +L+ +Y  C     +  +F     +  V WN ++AG   NGL  +A+ LFRQML + ++P
Sbjct: 350 SLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQP 409

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
            +  +  +  A + L+ L+    +HC+ ++      + VS+ +ID+Y+K G +  + +IF
Sbjct: 410 YEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIF 469

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
             +  ++KD+  W+VIIAGYG+HG G+ A+ LF++M++ G++P++ TFT  L ACSH GL
Sbjct: 470 DRL--REKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGL 527

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           +++GL+ FN ML  H    + +HYTC+VD+LGRAGR+D+A  LI  MP  P   +W +LL
Sbjct: 528 VEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLL 587

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
            +C IHGN+ LGE  A  L ELEPE P NYVL+S L++   +W D   VR  M + GL+K
Sbjct: 588 SSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQK 647

Query: 653 APAHSLIEV 661
               S IEV
Sbjct: 648 DAGCSWIEV 656



 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 166/526 (31%), Positives = 276/526 (52%), Gaps = 25/526 (4%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTH--LRSSLVRAY---GHVSNVRILFDEMSER 73
           L+Q     K I   ++LH  +  S        L + ++  Y   G  S+ R++FD++  +
Sbjct: 111 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 170

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           + F +N ++  Y +N    D++ +F  ++ + E+ PDN+T P VIKAC  L    LG  +
Sbjct: 171 NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQII 230

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEV-KAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           HG         D FVGN LIAMY   G V +A ++VFD M   +V SWN L+ GY +N+ 
Sbjct: 231 HGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSD 290

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            ++AL ++  M  SG++PD  ++ S+L AC  +K +  G  IH       L  +     +
Sbjct: 291 PRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGIS 350

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+ +Y+ CG    A+++FD M  R +V+W  MI GY+ NG    A+ LF+ M  +G++P 
Sbjct: 351 LLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPY 410

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            + I  +  ACS L  L+ G+ LH + +K +L  ++ V +++IDMYAK   + LS ++F 
Sbjct: 411 EIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFD 470

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--YAILAD- 429
           R  +K    WN I+AG   +G  ++A+ELF +ML   ++P+D T   +L A  +A L + 
Sbjct: 471 RLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVED 530

Query: 430 ----LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
                 Q +N+H           +E  T ++D+  + G ++ A ++  E+P  D D  +W
Sbjct: 531 GLEYFNQMLNLH------NIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMP-GDPDSRIW 583

Query: 486 SVIIAGYGMHGH---GETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
           S +++   +HG+   GE   +   E+     +P      S L A S
Sbjct: 584 SSLLSSCRIHGNLGLGEKVANKLLELEPE--KPENYVLISNLFAGS 627



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 123/262 (46%), Gaps = 8/262 (3%)

Query: 291 NGDVRNALGLFQLMQFEGV---RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC- 346
           +G+++ AL   Q    + V      S  +G LL AC     ++ GR LH         C 
Sbjct: 80  SGNLKEALDFLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCN 139

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
           + ++ T +I MY+ C     S  VF +  +K    WNAI++    N L   A+ +F + L
Sbjct: 140 DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSE-L 198

Query: 407 VEVVE--PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           + V E  P++ TL  ++ A A L DL     IH    +   +S V V   LI +Y KCG 
Sbjct: 199 ISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGL 258

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           +E A K   ++ +  K +  W+ ++ GY  +     A+ L+ +M  SG+ P+  T  S L
Sbjct: 259 VEEAVKRVFDL-MDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLL 317

Query: 525 HACSHGGLLDEGLDLFNFMLEN 546
            ACS    L  G ++  F L N
Sbjct: 318 LACSRMKSLHYGEEIHGFALRN 339


>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
          Length = 1017

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/649 (34%), Positives = 358/649 (55%), Gaps = 10/649 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAYGH---VSNVRILFDEMSER- 73
           L++  A  + I    +LH+ ++  G   T  + ++LV  Y     +S  R LFD   E+ 
Sbjct: 151 LLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG 210

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
            + L+N+++  Y+ +G S ++L++F  M   G   P++YT    + AC   ++ KLG  +
Sbjct: 211 DAVLWNSILSSYSTSGKSLETLELFREMHMTGP-APNSYTIVSALTACDGFSYAKLGKEI 269

Query: 134 HGRVLITG-FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           H  VL +     + +V N LIAMY   G++  A ++   M    VV+WN+LI GY +N  
Sbjct: 270 HASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLM 329

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            KEAL  F  M+ +G + D  S+ S++ A G L  +  G  +H  V       N+   N 
Sbjct: 330 YKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNT 389

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+DMY KC         F RM ++D+++WT++I GYA N     AL LF+ +  + +  +
Sbjct: 390 LIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEID 449

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            + +GS+L A S L  +   + +H   +++ L  + +++  L+D+Y KC  +  + +VF 
Sbjct: 450 EMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTVIQNELVDVYGKCRNMGYATRVFE 508

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
               K  V W ++++    NG   +AVELFR+M+   +  +   L  +L A A L+ L +
Sbjct: 509 SIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNK 568

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              IHCYL+R GF     ++  ++D+Y+ CG L+SA  +F  I  + K ++ ++ +I  Y
Sbjct: 569 GREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRI--ERKGLLQYTSMINAY 626

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
           GMHG G+ AV LF +M    V P+ ++F + L+ACSH GLLDEG      M   ++    
Sbjct: 627 GMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPW 686

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
            +HY C+VD+LGRA  + EA++ ++ M  +PT  VW ALL AC  H   E+GE+AA+ L 
Sbjct: 687 PEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLL 746

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           ELEP+NPGN VL+S +++   RW D E VR  M   G+ K P  S IE+
Sbjct: 747 ELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEM 795



 Score =  268 bits (686), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 180/598 (30%), Positives = 297/598 (49%), Gaps = 43/598 (7%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FDEM +R++F +NT++  Y  NG    +L ++  M R+        ++P ++KAC  L 
Sbjct: 101 VFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNM-RVEGVPLGLSSFPALLKACAKLR 159

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH-SVVSWNTLI 184
             + G  LH  ++  G+    F+ N L++MY    ++ AAR++FD   E    V WN+++
Sbjct: 160 DIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSIL 219

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRL 243
           S Y  +  + E L +F  M  +G  P+  ++VS L AC      ++G+ IH  ++     
Sbjct: 220 SSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTH 279

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
              +   NAL+ MY +CG + +A  +  +M+  DVVTW S+I GY  N   + AL  F  
Sbjct: 280 SSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSD 339

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M   G + + +++ S+++A   L  L  G  LHA+ IK   +  + V   LIDMY+KCNL
Sbjct: 340 MIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNL 399

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
                + F R   K  + W  ++AG   N    +A+ELFR +  + +E ++  L S+L A
Sbjct: 400 TCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRA 459

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
            ++L  +     IHC+++R G L  V +   L+D+Y KC ++  A ++F    IK KD+V
Sbjct: 460 SSVLKSMLIVKEIHCHILRKGLLDTV-IQNELVDVYGKCRNMGYATRVFES--IKGKDVV 516

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF--- 540
            W+ +I+   ++G+   AV LF+ MV++G+  + V     L A +    L++G ++    
Sbjct: 517 SWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYL 576

Query: 541 ---NFMLENHQTCSRADHYTC---------IVDLLGRAGRLD------------------ 570
               F LE     +  D Y C         + D + R G L                   
Sbjct: 577 LRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAV 636

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL---FELEPENPGNYVLL 625
           E +D +R   + P H  + ALL AC   G ++ G    K +   +ELEP  P +YV L
Sbjct: 637 ELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPW-PEHYVCL 693



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/452 (28%), Positives = 232/452 (51%), Gaps = 33/452 (7%)

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
           +  KVFD M + +  +WNT+I  Y  N     AL ++  M   GV    +S  ++L AC 
Sbjct: 97  SQEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACA 156

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAW--NALVDMYVKCGSVNEARLVFDRMSER-DVVT 280
            L++I  G  +H L+   +LG +   +  NALV MY K   ++ AR +FD   E+ D V 
Sbjct: 157 KLRDIRSGSELHSLLV--KLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVL 214

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           W S+++ Y+ +G     L LF+ M   G  PNS TI S L+AC    Y K G+ +HA  +
Sbjct: 215 WNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVL 274

Query: 341 KQNL-ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAV 399
           K +    E+ V  ALI MY +C  +  + ++  + +    V WN+++ G V N + ++A+
Sbjct: 275 KSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEAL 334

Query: 400 ELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459
           E F  M+    + ++ ++ S++ A   L++L   M +H Y+I++G+ S ++V   LID+Y
Sbjct: 335 EFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMY 394

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
           SKC       + F  + + DKD++ W+ +IAGY  +     A+ LF+++ +  ++ +E+ 
Sbjct: 395 SKCNLTCYMGRAF--LRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMI 452

Query: 520 FTSALHACS-----------HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
             S L A S           H  +L +G  L + +++N            +VD+ G+   
Sbjct: 453 LGSILRASSVLKSMLIVKEIHCHILRKG--LLDTVIQNE-----------LVDVYGKCRN 499

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           +  A  +  ++  K     W +++ +  ++GN
Sbjct: 500 MGYATRVFESIKGKDV-VSWTSMISSSALNGN 530


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/611 (35%), Positives = 328/611 (53%), Gaps = 61/611 (9%)

Query: 110  DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
            D+  Y + +K CT +    LG+ +HG ++  GFD+D ++   L+  Y     ++ A +VF
Sbjct: 673  DSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVF 732

Query: 170  DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
              M     + WN  I    ++   ++ + +F  M  S ++ + A++V VL ACG +  + 
Sbjct: 733  HEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALN 792

Query: 230  MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
              + IH  V    L  +++  N L+ MY K G +  AR VFD M  R+  +W SMI+ YA
Sbjct: 793  AAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYA 852

Query: 290  LNGDVRNALGLF-----------------------------------QLMQFEGVRPNSL 314
              G + +A  LF                                   Q MQ EG +PNS 
Sbjct: 853  ALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSS 912

Query: 315  TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
            ++ S+L A S L +L  G+  H + ++   +C+V V T+LIDMY K + +  +  VF   
Sbjct: 913  SMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNM 972

Query: 375  SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP---------------------- 412
              +    WN++++G    G+   A+ L  QM  E ++P                      
Sbjct: 973  KNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAF 1032

Query: 413  --NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
              N A++  LL A A L+ LQ+   IHC  IR GF+  V V+T LID+YSK  SL++AHK
Sbjct: 1033 MPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHK 1092

Query: 471  IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
            +F  I  ++K +  W+ +I G+ + G G+ A+S+F EM + GV P+ +TFT+ L AC + 
Sbjct: 1093 VFRRI--QNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNS 1150

Query: 531  GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
            GL+ EG   F+ M+ +++   R +HY C+VDLLGRAG LDEA+DLI TMPLKP   +WGA
Sbjct: 1151 GLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGA 1210

Query: 591  LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
            LLG+C IH N+   E AAK LF+LEP N  NY+L+  LYS   RW+D +++R++M   G+
Sbjct: 1211 LLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGV 1270

Query: 651  RKAPAHSLIEV 661
            R     S I++
Sbjct: 1271 RNRQVWSWIQI 1281



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 130/545 (23%), Positives = 235/545 (43%), Gaps = 72/545 (13%)

Query: 152  LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE-ALVVFDWMLKSGVEP 210
            LI+ Y+ FG+  +A  VF      + + WN+ +  +  +A +    L VF  +   GV  
Sbjct: 613  LISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVF 672

Query: 211  DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
            D       L  C  + +I +G  IH  +       ++    AL++ Y +C  + +A  VF
Sbjct: 673  DSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVF 732

Query: 271  DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
              M   + + W   I     +  ++  + LF+ MQF  ++  + TI  +L AC  +  L 
Sbjct: 733  HEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALN 792

Query: 331  RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA------ 384
              + +H +  +  L+ +V +   LI MY+K   ++L+ +VF     + T  WN+      
Sbjct: 793  AAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYA 852

Query: 385  -----------------------------ILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
                                         +L+G   +G   + + + ++M  E  +PN +
Sbjct: 853  ALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSS 912

Query: 416  TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
            ++ S+L A + L  L      H Y++R GF   V V T LID+Y K  SL SA  +F   
Sbjct: 913  SMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDN- 971

Query: 476  PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF--------------- 520
             +K+++I  W+ +++GY   G  E A+ L  +M + G++P+ VT+               
Sbjct: 972  -MKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARK 1030

Query: 521  ---------TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRL 569
                     T  L AC+   LL +G ++    + N       D +  T ++D+  ++  L
Sbjct: 1031 AFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFI---EDVFVATALIDMYSKSSSL 1087

Query: 570  DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG-NYVLLSKL 628
              A+ + R +  K T A W  ++    I G   LG+ A     E++    G + +  + L
Sbjct: 1088 KNAHKVFRRIQNK-TLASWNCMIMGFAIFG---LGKEAISVFNEMQKVGVGPDAITFTAL 1143

Query: 629  YSAVR 633
             SA +
Sbjct: 1144 LSACK 1148



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 178/379 (46%), Gaps = 62/379 (16%)

Query: 9    LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVR 64
            L   T  +++++Q      ++   KQ+H ++   G      L + L+  Y   G +   R
Sbjct: 771  LKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELAR 830

Query: 65   ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMF-------------------------- 98
             +FD M  R++  +N+++  YA  G  +D+  +F                          
Sbjct: 831  RVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHG 890

Query: 99   -----LGMLRL--GE-YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
                 L +L+   GE + P++ +   V++A ++L +  +G   HG VL  GFD D +VG 
Sbjct: 891  YKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGT 950

Query: 151  CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
             LI MY+    + +A+ VFD M   ++ +WN+L+SGY      ++AL + + M K G++P
Sbjct: 951  SLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKP 1010

Query: 211  D------------------------CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
            D                         AS+  +L AC  L  ++ G+ IH L       ++
Sbjct: 1011 DLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIED 1070

Query: 247  IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
            +    AL+DMY K  S+  A  VF R+  + + +W  MI G+A+ G  + A+ +F  MQ 
Sbjct: 1071 VFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQK 1130

Query: 307  EGVRPNSLTIGSLLSACSS 325
             GV P+++T  +LLSAC +
Sbjct: 1131 VGVGPDAITFTALLSACKN 1149



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 180/406 (44%), Gaps = 43/406 (10%)

Query: 248  AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN-GDVRNALGLFQLMQF 306
            AA   L+  Y+  G    A +VF     R+ + W S +  +  + G +   L +F+ +  
Sbjct: 608  AAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHG 667

Query: 307  EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
            +GV  +S      L  C+ +  +  G  +H   IK+  + +V +  AL++ Y +C  ++ 
Sbjct: 668  KGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEK 727

Query: 367  SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
            + QVF      + + WN  +   + +   +K VELFR+M    ++   AT+  +L A   
Sbjct: 728  ANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGK 787

Query: 427  LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD------- 479
            +  L  A  IH Y+ R+G  S V +   LI +YSK G LE A ++F  +  ++       
Sbjct: 788  MGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSM 847

Query: 480  --------------------------KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
                                       DIV W+ +++G+ +HG+ E  +++ + M   G 
Sbjct: 848  ISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGF 907

Query: 514  QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDE 571
            +PN  + TS L A S  G L+ G +   ++L N   C   D Y  T ++D+  +   L  
Sbjct: 908  KPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDC---DVYVGTSLIDMYVKNHSLXS 964

Query: 572  AYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617
            A  +   M  +   A W +L+      G   + E A + L ++E E
Sbjct: 965  AQAVFDNMKNRNIFA-WNSLVSGYSFKG---MFEDALRLLNQMEKE 1006


>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera]
          Length = 2090

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/609 (35%), Positives = 344/609 (56%), Gaps = 7/609 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G + +   +FD M  R S  +N ++  +   GAS   L  F    R+  + P+  T  + 
Sbjct: 84  GALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFR-QARVIAFEPNVSTLVLA 142

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           I AC  L   + G+ +HG ++ +GF     V N L++MY +  +++ A ++FD M E  V
Sbjct: 143 IHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEELFDEMCERDV 201

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           +SW+ +I GY +   AK AL +F  M   + +E D  ++VSVL AC    +I MGR +H 
Sbjct: 202 ISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHG 261

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
           +V    L  ++   N+++DMY KC     A   F+ M  R+ V+W S+I+G         
Sbjct: 262 VVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSE 321

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           AL LF  M   G R + +T+ +LL +C       + + +H+  I+   E    V  +LID
Sbjct: 322 ALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLID 381

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
            Y+KC+L++L++++F R   K TV W+A++AG  H G   +A+ LF++M     +PN  T
Sbjct: 382 AYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVT 441

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           + SLL A+++ ADL+++   H   IR G  + V V T ++D+Y+KCG +  + K F +IP
Sbjct: 442 ILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIP 501

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
             +K+IV W  +IA  GM+G    A++L  EM   G++PN VT  S L ACSHGGL++EG
Sbjct: 502 --EKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACSHGGLVEEG 559

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP--LKPTHAVWGALLGA 594
           L  F  M+++H      +HY+C+VD+L RAG+L+ A +LI  MP  ++    +WGALL A
Sbjct: 560 LSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPERMRDGAGLWGALLSA 619

Query: 595 CVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP 654
           C   GN  LG  AA  + ELEP++   Y L S +Y+A   W DA  +R ++  +G+R   
Sbjct: 620 CRSSGNSRLGAGAAFRVLELEPQSSAGYFLASSMYAASGLWADAARMRWLVKARGVRVVA 679

Query: 655 AHSLIEVRN 663
            +SL+ V +
Sbjct: 680 GYSLVHVED 688



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 156/473 (32%), Positives = 251/473 (53%), Gaps = 7/473 (1%)

Query: 16  VIKLVQQYAATKSIAGTKQ---LHAFIITSGPL-FTHLRSSLVRAYGH--VSNVRILFDE 69
           V  LV    A +S+   ++   +H +II SG L    +++SL+  Y    +     LFDE
Sbjct: 136 VSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYADNDMERAEELFDE 195

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           M ER    ++ ++  Y Q G +  +L++FL M        D  T   V+KAC +     +
Sbjct: 196 MCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISM 255

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G ++HG V+  G D D FVGN +I MY    + ++A K F+ M   + VSWN++ISG  +
Sbjct: 256 GRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVR 315

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
                EAL +F  M K+G   D  ++V++L +C Y  +    + IH +V       N   
Sbjct: 316 TEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFV 375

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
            N+L+D Y KC  +  A  +FDR+  +D V+W++MI G+   G    A+ LFQ M     
Sbjct: 376 INSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQE 435

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
           +PN +TI SLL A S    LKR +  H   I++ L  EV V TA++DMYAKC  + LS +
Sbjct: 436 KPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAKCGEIGLSRK 495

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
            F +  +K  V W A++A C  NGLAR A+ L  +M +  ++PN  T  S+L A +    
Sbjct: 496 AFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACSHGGL 555

Query: 430 LQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
           +++ ++    +++ +G    +E  + ++D+ S+ G L SA  +  ++P + +D
Sbjct: 556 VEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPERMRD 608



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 151/495 (30%), Positives = 240/495 (48%), Gaps = 43/495 (8%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           ++KAC+ L                GFD  T  GN ++  YM  G + +A  VFD+M    
Sbjct: 56  ILKACSSLP---------------GFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSRD 100

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
            VSWN +I G+     + + L  F        EP+ +++V  + AC  L  +E G  +H 
Sbjct: 101 SVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHG 160

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            +         +  N+L+ MY     +  A  +FD M ERDV++W+ MI GY   G+ + 
Sbjct: 161 YIIRSGFLDIPSVQNSLLSMYAD-NDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKM 219

Query: 297 ALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
           AL LF ++     +  + +T+ S+L AC++   +  GRS+H   I + L+ ++ V  ++I
Sbjct: 220 ALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSII 279

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           DMY+KC+  + +F+ F     + TV WN+I++G V      +A+ LF  M       ++ 
Sbjct: 280 DMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEV 339

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           TL +LL +     D  Q   IH  +IR+G+     V   LID YSKC  +E A K+F   
Sbjct: 340 TLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDR- 398

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS------- 528
            +K KD V WS +IAG+   G  + A++LF+EM Q+  +PN VT  S L A S       
Sbjct: 399 -LKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKR 457

Query: 529 ----HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
               HG  +  GL             +     T I+D+  + G +  +      +P K  
Sbjct: 458 SKWAHGIAIRRGL------------AAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNI 505

Query: 585 HAVWGALLGACVIHG 599
            + WGA++ AC ++G
Sbjct: 506 VS-WGAMIAACGMNG 519



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 168/337 (49%), Gaps = 20/337 (5%)

Query: 195 EALVVFDWMLKSGVE-PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
           EA   +  M K+G +  D   V S+L AC  L   +       L + G         N++
Sbjct: 32  EACSRYHQMKKAGAQLTDPTLVHSILKACSSLPGFD------SLTSTG---------NSV 76

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           +D Y+K G+++ A  VFD M  RD V+W  MI+G+   G     L  F+  +     PN 
Sbjct: 77  LDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIAFEPNV 136

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            T+   + AC SL  ++ G  +H + I+        V+ +L+ MYA  N ++ + ++F  
Sbjct: 137 STLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEELFDE 195

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQ 432
             ++  + W+ ++ G V  G A+ A++LF +M     +E +  T+ S+L A A   D+  
Sbjct: 196 MCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDISM 255

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
             ++H  +I  G    + V   +ID+YSKC   ESA K F+E+P ++   V W+ II+G 
Sbjct: 256 GRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNT--VSWNSIISGL 313

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
                   A+SLF  M ++G + +EVT  + L +C +
Sbjct: 314 VRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKY 350


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/625 (33%), Positives = 345/625 (55%), Gaps = 11/625 (1%)

Query: 51  SSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           SSLV  Y     +     +F+ + ER+  L+N +++ YA NG SH  +++F+ M   G Y
Sbjct: 366 SSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSG-Y 424

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
           N D++T+  ++  C      ++G   H  ++      + FVGN L+ MY   G ++ AR+
Sbjct: 425 NIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQ 484

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F+ M +   VSWNT+I GY ++    EA  +F  M   G+  D A + S L AC  +  
Sbjct: 485 IFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHG 544

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +  G+ +H L     L + +   ++L+DMY KCG + +AR VF  M E  VV+  ++I G
Sbjct: 545 LYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAG 604

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y+ N ++  A+ LFQ M  +GV P+ +T  +++ AC     L  G   H   IK     E
Sbjct: 605 YSQN-NLEEAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKWGFSSE 663

Query: 348 -VIVETALIDMYAKCNLVKLSFQVFAR-TSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
              +  +L+ +Y     +  +  +F+  +S K  V W  +++G   NG   +A++ +++M
Sbjct: 664 GEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEM 723

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
             +   P+ AT  ++L   ++L+ L++   IH  +           S  LID+Y+KCG +
Sbjct: 724 RHDGALPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDM 783

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
           +S+ ++F E+  +  ++V W+ +I GY  +G+ E A+ +F  M QS + P+E+TF   L 
Sbjct: 784 KSSSQVFDEMR-RRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLT 842

Query: 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           ACSH G + +G  +F  M+  +   +R DH  C+VDLLGR G L EA D I    LKP  
Sbjct: 843 ACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDA 902

Query: 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645
            +W +LLGAC IHG+   GE+AA+ L ELEP+N   YVLLS +Y++  RW++A  +R  M
Sbjct: 903 RLWSSLLGACRIHGDDMRGEIAAERLIELEPQNSSAYVLLSNIYASQGRWEEANALRKAM 962

Query: 646 DEKGLRKAPAHSLIEV---RNILTA 667
            ++G++K P +S I+V   R+I  A
Sbjct: 963 RDRGVKKVPGYSWIDVGQRRHIFAA 987



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 147/456 (32%), Positives = 237/456 (51%), Gaps = 8/456 (1%)

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
           ER+S+    ++ MYA+     D+ ++F G++     +P+   +  +          +  +
Sbjct: 192 ERNSYCGGALVDMYAKCDRLGDAQRVFDGIV-----DPNTVCWTCLFSGYVKAGLPEEAV 246

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +  R+   G   D      +I  Y++ G++K AR +F  M    VV+WN +ISG+ K  
Sbjct: 247 IVFERMRGEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRG 306

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
               A+  F  M KS V+   +++ SVL A G +  +++G ++H       L  NI   +
Sbjct: 307 CEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGS 366

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           +LV MY KC  +  A  VF+ + ER+ V W +MI GYA NG+    + LF  M+  G   
Sbjct: 367 SLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNI 426

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +  T  SLLS C+  + L+ G   H+  IK+ L   + V  AL+DMYAKC  ++ + Q+F
Sbjct: 427 DDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIF 486

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
                +  V WN I+ G V +    +A +LF +M    +  + A L S L A   +  L 
Sbjct: 487 EHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLY 546

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           Q   +HC  ++ G   V+   + LID+YSKCG +E A K+FS +P  +  +V  + +IAG
Sbjct: 547 QGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMP--EWSVVSMNALIAG 604

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           Y  + + E AV LF+EM+  GV P+E+TF + + AC
Sbjct: 605 YSQN-NLEEAVVLFQEMLTKGVNPSEITFATIVEAC 639



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 141/510 (27%), Positives = 237/510 (46%), Gaps = 41/510 (8%)

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
           E+    +N+++ MY+  G     L+ F+ +     + P+ +T+ IV+         + G 
Sbjct: 122 EKDVTAWNSMLSMYSSIGQPGKVLRSFVSLFENLIF-PNKFTFSIVLSTSARETNVEFGR 180

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H  ++  G + +++ G  L+ MY     +  A++VFD + + + V W  L SGY K  
Sbjct: 181 QIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAG 240

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
             +EA++VF+ M   G  PD  + V+V                                 
Sbjct: 241 LPEEAVIVFERMRGEGHRPDHLAFVTV--------------------------------- 267

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
             ++ Y+  G + +ARL+F  M   DVV W  MI+G+   G    A+  F  M+   V+ 
Sbjct: 268 --INTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKS 325

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
              T+GS+LSA   +  L  G  +HA  IK  L   + V ++L+ MY+KC  ++ + +VF
Sbjct: 326 TRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVF 385

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
               ++  V WNA++ G  HNG + K +ELF  M       +D T  SLL   A+  DL+
Sbjct: 386 EALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLE 445

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
                H  +I+      + V   L+D+Y+KCG+LE A +IF  +   D+D V W+ II G
Sbjct: 446 MGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMC--DRDNVSWNTIIGG 503

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           Y    +   A  LF  M   G+  +     S L AC++   L +G  +    L       
Sbjct: 504 YVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQV--HCLSVKCGLD 561

Query: 552 RADHY-TCIVDLLGRAGRLDEAYDLIRTMP 580
           R  H  + ++D+  + G +++A  +  +MP
Sbjct: 562 RVLHTGSSLIDMYSKCGIIEDARKVFSSMP 591



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 127/473 (26%), Positives = 218/473 (46%), Gaps = 40/473 (8%)

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           ++G A+H + LI G D +  +GN ++ +Y    +V  A K F+++ E  V +WN+++S Y
Sbjct: 77  RIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSMLSMY 135

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
                  + L  F  + ++ + P+  +   VL        +E GR IH  +    L +N 
Sbjct: 136 SSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNS 195

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
               ALVDMY KC  + +A+ VFD + + + V WT + +GY   G    A+ +F+ M+ E
Sbjct: 196 YCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGE 255

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           G RP+ L   ++++   SL  LK  R L                                
Sbjct: 256 GHRPDHLAFVTVINTYISLGKLKDARLL-------------------------------- 283

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
              F        V WN +++G    G    A+E F  M    V+   +TL S+L A  I+
Sbjct: 284 ---FGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIV 340

Query: 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
           A+L   + +H   I+ G  S + V + L+ +YSKC  +E+A K+F    +++++ V+W+ 
Sbjct: 341 ANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFE--ALEERNDVLWNA 398

Query: 488 IIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH 547
           +I GY  +G     + LF +M  SG   ++ TFTS L  C+    L+ G    + +++  
Sbjct: 399 MIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKK 458

Query: 548 QTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
            T         +VD+  + G L++A  +   M     +  W  ++G  V   N
Sbjct: 459 LT-KNLFVGNALVDMYAKCGALEDARQIFEHM-CDRDNVSWNTIIGGYVQDEN 509



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 145/320 (45%), Gaps = 58/320 (18%)

Query: 228 IEMGRMIHE--LVAG----GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTW 281
           + +G+ +H   L+ G    GRLG      NA+VD+Y KC  V+ A   F+ + E+DV  W
Sbjct: 76  LRIGKAVHSKSLILGIDSEGRLG------NAIVDLYAKCAQVSYAEKQFNSL-EKDVTAW 128

Query: 282 TSMINGYALNGD----VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
            SM++ Y+  G     +R+ + LF+ + F    PN  T   +LS  +    ++ GR +H 
Sbjct: 129 NSMLSMYSSIGQPGKVLRSFVSLFENLIF----PNKFTFSIVLSTSARETNVEFGRQIHC 184

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
             IK  LE       AL+DMYAKC+ +  + +VF       TV W  + +G V  GL  +
Sbjct: 185 SMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEE 244

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
           AV +F +M  E   P+                               F++V       I+
Sbjct: 245 AVIVFERMRGEGHRPD----------------------------HLAFVTV-------IN 269

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
            Y   G L+ A  +F E+P    D+V W+V+I+G+G  G    A+  F  M +S V+   
Sbjct: 270 TYISLGKLKDARLLFGEMP--SPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTR 327

Query: 518 VTFTSALHACSHGGLLDEGL 537
            T  S L A      LD GL
Sbjct: 328 STLGSVLSAIGIVANLDLGL 347



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 92/213 (43%), Gaps = 24/213 (11%)

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           +H   +  G  S   +   ++D+Y+KC  +  A K F+ +   +KD+  W+ +++ Y   
Sbjct: 82  VHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSL---EKDVTAWNSMLSMYSSI 138

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM----LENHQTCS 551
           G     +  F  + ++ + PN+ TF+  L   +    ++ G  +   M    LE +  C 
Sbjct: 139 GQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCG 198

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG-EVAAKW 610
            A     +VD+  +  RL +A  +   + + P    W      C+  G V+ G    A  
Sbjct: 199 GA-----LVDMYAKCDRLGDAQRVFDGI-VDPNTVCW-----TCLFSGYVKAGLPEEAVI 247

Query: 611 LFEL---EPENPGN--YVLLSKLYSAVRRWKDA 638
           +FE    E   P +  +V +   Y ++ + KDA
Sbjct: 248 VFERMRGEGHRPDHLAFVTVINTYISLGKLKDA 280


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/598 (34%), Positives = 328/598 (54%), Gaps = 3/598 (0%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F EM ER+   ++ V+  Y QN    + LK+F  ML++G       TY  V ++C  L+
Sbjct: 195 VFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVG-MGVSQSTYASVFRSCAGLS 253

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             KLG  LHG  L + F  D+ +G   + MY     +  A KVF+ +      S+N +I 
Sbjct: 254 AFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIV 313

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY +     +AL +F  + ++ +  D  S+   L AC  +K    G  +H L     LG 
Sbjct: 314 GYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGF 373

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           NI   N ++DMY KCG++ EA L+F+ M  RD V+W ++I  +  N ++   L LF  M 
Sbjct: 374 NICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSML 433

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
              + P+  T GS++ AC+    L  G  +H   IK  +  +  V +AL+DMY KC ++ 
Sbjct: 434 RSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLM 493

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + ++ AR  +K TV WN+I++G      +  A   F QML   + P++ T  ++L   A
Sbjct: 494 EAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCA 553

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            +A ++    IH  +++    S V +++ L+D+YSKCG+++ +  +F + P   +D V W
Sbjct: 554 NMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAP--KRDYVTW 611

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           S +I  Y  HG GE A++LF+EM    V+PN   F S L AC+H G +D+GL  F  ML 
Sbjct: 612 SAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLS 671

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
           ++    + +HY+C+VDLLGR+G+++EA  LI +MP +    +W  LL  C + GNVE+ E
Sbjct: 672 HYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAE 731

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            A   L +L+P++   YVLL+ +Y+ V  W +   +R +M    L+K P  S IEVR+
Sbjct: 732 KAFNSLLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWIEVRD 789



 Score =  246 bits (627), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 164/584 (28%), Positives = 285/584 (48%), Gaps = 15/584 (2%)

Query: 51  SSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++L+  Y  + N+   + LFD M ER    +N+++  Y  NG +  S+++F+ M  L   
Sbjct: 76  NTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLK-- 133

Query: 108 NPDNY-TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR 166
            P +Y T+ +++KAC+ +    LG+ +H   +  GF+ D   G+ L+ MY    ++  A 
Sbjct: 134 IPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAF 193

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           +VF  M E ++V W+ +I+GY +N    E L +F  MLK G+    ++  SV  +C  L 
Sbjct: 194 RVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLS 253

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
             ++G  +H          +     A +DMY KC  + +A  VF+ +      ++ ++I 
Sbjct: 254 AFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIV 313

Query: 287 GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346
           GYA       AL +FQ +Q   +  + +++   L+ACS +     G  LH   +K  L  
Sbjct: 314 GYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGF 373

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
            + V   ++DMY KC  +  +  +F    ++  V WNAI+A    N    K + LF  ML
Sbjct: 374 NICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSML 433

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
              +EP+D T  S++ A A    L     IH  +I+ G      V + L+D+Y KCG L 
Sbjct: 434 RSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLM 493

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
            A KI +   +++K  V W+ II+G+      E A   F +M++ G+ P+  T+ + L  
Sbjct: 494 EAEKIHAR--LEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDV 551

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           C++   ++ G  +   +L+  Q  S     + +VD+  + G + ++  +    P K  + 
Sbjct: 552 CANMATIELGKQIHAQILK-LQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAP-KRDYV 609

Query: 587 VWGALLGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLLSKL 628
            W A++ A   HG   LGE A     E++  N  P + + +S L
Sbjct: 610 TWSAMICAYAYHG---LGEKAINLFEEMQLLNVKPNHTIFISVL 650



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 139/521 (26%), Positives = 257/521 (49%), Gaps = 40/521 (7%)

Query: 108 NP-DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMY-----MNF-- 159
           NP    T+  +++ C++L     G  +H ++++TGF    +V NCL+  Y     MN+  
Sbjct: 2   NPTKKLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAF 61

Query: 160 ------------------------GEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
                                   G +  A+ +FD+M E  VVSWN+L+S Y  N   ++
Sbjct: 62  KVFDRMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRK 121

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           ++ +F  M    +  D A+   +L AC  +++  +G  +H L        ++   +ALVD
Sbjct: 122 SIEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVD 181

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           MY KC  +++A  VF  M ER++V W+++I GY  N      L LF+ M   G+  +  T
Sbjct: 182 MYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQST 241

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
             S+  +C+ L   K G  LH   +K +   + I+ TA +DMYAKC  +  +++VF    
Sbjct: 242 YASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLP 301

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
                 +NAI+ G        KA+++F+ +    +  ++ +L+  L A +++    + + 
Sbjct: 302 NPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQ 361

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           +H   ++ G    + V+  ++D+Y KCG+L  A  IF E  ++ +D V W+ IIA +  +
Sbjct: 362 LHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEE--MERRDAVSWNAIIAAHEQN 419

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
                 +SLF  M++S ++P++ T+ S + AC+    L+ G ++   ++++       D 
Sbjct: 420 EEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMG---LDW 476

Query: 556 Y--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           +  + +VD+ G+ G L EA  +   +  K T   W +++  
Sbjct: 477 FVGSALVDMYGKCGMLMEAEKIHARLEEKTT-VSWNSIISG 516


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/616 (33%), Positives = 334/616 (54%), Gaps = 3/616 (0%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           +L   +G       +F +M       +NT++  +AQ G    +L++F  M +L    PD 
Sbjct: 187 ALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEM-QLSGLRPDC 245

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T   ++ AC  +   + G  LH  +L  G   D      L+ +Y+  G+++ A  +F+ 
Sbjct: 246 VTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNL 305

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
               +VV WN ++  Y + +   ++  +F  M  +G+ P+  +   +L  C    +IE+G
Sbjct: 306 GDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELG 365

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
             IH L        ++     L+DMY K G +++AR + + + +RDVV+WTSMI GY  +
Sbjct: 366 EQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQH 425

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
                AL  F+ MQ  GV P+++ + S  SAC+ +  +++G  +HA         ++ + 
Sbjct: 426 DFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIW 485

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
             L+++YA+C   + +F +F     K  + WN +++G   + L ++A+ +F +M     +
Sbjct: 486 NTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAK 545

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
            N  T  S + A A LAD++Q   +H   ++ G  S  EV+  LI +Y KCGS+E A  I
Sbjct: 546 YNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMI 605

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           FSE+ ++++  V W+ II     HG G  A+ LF +M Q G++PN+VTF   L ACSH G
Sbjct: 606 FSEMSLRNE--VSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVG 663

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
           L++EGL  F  M   +      DHY C+VD+LGRAG+LD A   +  MP+     +W  L
Sbjct: 664 LVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTL 723

Query: 592 LGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651
           L AC +H N+E+GE+AAK L ELEP +  +YVLLS  Y+   +W + + VR +M ++G+R
Sbjct: 724 LSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIR 783

Query: 652 KAPAHSLIEVRNILTA 667
           K P  S IEV+N + A
Sbjct: 784 KEPGRSWIEVKNAVHA 799



 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 161/570 (28%), Positives = 287/570 (50%), Gaps = 9/570 (1%)

Query: 34  QLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           ++HA  +  G     L  +L   L    G V   R +F E+S R    +  ++  YAQ+G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              ++ +++   +      P  Y    V+ ACT       G  +H +V    F  +TFVG
Sbjct: 124 LGKEAFRLY-SQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG 182

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N LIA+Y+ FG  K A +VF  M     V++NTLISG+ +  + + AL +FD M  SG+ 
Sbjct: 183 NALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLR 242

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PDC +V S+L AC  + +++ G+ +H  +    +  +     +L+D+YVKCG +  A  +
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F+     +VV W  M+  Y    D+  +  +F  MQ  G+ PN  T   +L  C+    +
Sbjct: 303 FNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQI 362

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           + G  +H+ +IK   E ++ V   LIDMY+K   +  + ++     K+  V W +++AG 
Sbjct: 363 ELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGY 422

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
           V +    +A+  F++M    V P++  L S   A A +  ++Q + IH  +   G+ + +
Sbjct: 423 VQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADI 482

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            +   L+++Y++CG  E A  +F EI  KD+  + W+ +I+G+G     + A+ +F +M 
Sbjct: 483 SIWNTLVNLYARCGRSEEAFSLFREIEHKDE--ITWNGLISGFGQSRLYKQALMVFMKMG 540

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           Q+G + N  TF SA+ A ++   + +G  +    ++   T S  +    ++ L G+ G +
Sbjct: 541 QAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHT-SETEVANALISLYGKCGSI 599

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           ++A  +   M L+     W  ++ +C  HG
Sbjct: 600 EDAKMIFSEMSLR-NEVSWNTIITSCSQHG 628



 Score =  241 bits (616), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 140/507 (27%), Positives = 259/507 (51%), Gaps = 9/507 (1%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHL-RSSLVRAY---GHVSNVRILFDEMS 71
           V  L+   A+   +   KQLH++++ +G  F ++   SL+  Y   G +     +F+   
Sbjct: 248 VASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGD 307

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
             +  L+N ++  Y Q      S ++F G ++    +P+ +TYP +++ CT     +LG 
Sbjct: 308 RTNVVLWNLMLVAYGQISDLAKSFEIF-GQMQATGIHPNQFTYPCILRTCTCTGQIELGE 366

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H   +  GF+ D +V   LI MY  +G +  ARK+ + + +  VVSW ++I+GY ++ 
Sbjct: 367 QIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHD 426

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
           + +EAL  F  M   GV PD   + S   AC  +K +  G  IH  V       +I+ WN
Sbjct: 427 FCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWN 486

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            LV++Y +CG   EA  +F  +  +D +TW  +I+G+  +   + AL +F  M   G + 
Sbjct: 487 TLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKY 546

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           N  T  S +SA ++L  +K+G+ +H   +K     E  V  ALI +Y KC  ++ +  +F
Sbjct: 547 NVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIF 606

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
           +  S +  V WN I+  C  +G   +A++LF QM  E ++PND T   +L A + +  ++
Sbjct: 607 SEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVE 666

Query: 432 QAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
           + ++    +   YG   + +    ++DI  + G L+ A +   E+PI   + ++W  +++
Sbjct: 667 EGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPIT-ANAMIWRTLLS 725

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNE 517
              +H + E      K +++  ++P++
Sbjct: 726 ACKVHKNIEIGELAAKHLLE--LEPHD 750



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 154/476 (32%), Positives = 239/476 (50%), Gaps = 5/476 (1%)

Query: 118 IKACTDLAWR-KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           ++AC     R  L + +H   ++ G   D  +GN LI +Y   G V  AR+VF  +    
Sbjct: 49  LQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRD 108

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
            VSW  ++SGY ++   KEA  ++  M  + V P    + SVL AC   K    GRMIH 
Sbjct: 109 HVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHA 168

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            V            NAL+ +Y+  GS   A  VF  M   D VT+ ++I+G+A  G    
Sbjct: 169 QVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGEC 228

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           AL +F  MQ  G+RP+ +T+ SLL+AC+S+  L++G+ LH++ +K  +  + I E +L+D
Sbjct: 229 ALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLD 288

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           +Y KC  ++ +  +F    +   V WN +L          K+ E+F QM    + PN  T
Sbjct: 289 LYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFT 348

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
              +L        ++    IH   I+ GF S + VS  LID+YSK G L+ A KI     
Sbjct: 349 YPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILE--M 406

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           ++ +D+V W+ +IAGY  H   E A++ FKEM   GV P+ +   SA  AC+    + +G
Sbjct: 407 LEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQG 466

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           L +   +  +    +    +  +V+L  R GR +EA+ L R +  K     W  L+
Sbjct: 467 LQIHARVYVSGYA-ADISIWNTLVNLYARCGRSEEAFSLFREIEHKD-EITWNGLI 520


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 225/662 (33%), Positives = 367/662 (55%), Gaps = 14/662 (2%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFT--HLRSSLVRAYGHVSNVRIL- 66
           P +  +V  L+    A++   G + +H + + +G   +  H+ ++L+  Y    ++R+L 
Sbjct: 152 PNSRTMVALLLACEGASELRLG-RGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLP 209

Query: 67  --FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
             FD M  R+   +N ++  Y   G    +L++F+ ML + E   D  T  + ++AC +L
Sbjct: 210 LLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQML-VDEVKFDCVTMLVAVQACAEL 268

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
              KLG  +H   +   F  D ++ N L+ MY N G ++++ ++F+++       WN++I
Sbjct: 269 GSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMI 328

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE-IEMGRMIHELVAGGRL 243
           S Y      +EA+ +F  M   GV+ D  +VV +L  C  L   +  G+ +H  V    +
Sbjct: 329 SAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGM 388

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
             + +  NAL+ MY +   V   + +FDRM   D+++W +MI   A N     A  LF+ 
Sbjct: 389 RIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFER 448

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M+   ++PNS TI S+L+AC  +  L  GRS+H + +K ++E    + TAL DMY  C  
Sbjct: 449 MRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGD 508

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
              +  +F     +  + WNA++A  V N  A KA+ LF +M+ E  EPN  T+ ++L +
Sbjct: 509 EATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRMISEA-EPNSVTIINVLSS 567

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVS--TGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
           +  LA L Q  ++H Y+ R GF   +++S     I +Y++CGSL+SA  IF  +P   ++
Sbjct: 568 FTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLP--KRN 625

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           I+ W+ +IAGYGM+G G  A+  F +M++ G +PN VTF S L ACSH G ++ GL LF+
Sbjct: 626 IISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFH 685

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            M+++        HY+CIVDLL R G +DEA + I +MP++P  +VW ALL +C  + + 
Sbjct: 686 SMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDA 745

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +  +   + L +LEP N GNYVLLS +Y+    W +   +R  + EKGLRK P  S I V
Sbjct: 746 KQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISWIIV 805

Query: 662 RN 663
           +N
Sbjct: 806 KN 807



 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 179/607 (29%), Positives = 301/607 (49%), Gaps = 28/607 (4%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLR--SSLVRAY---G 58
           P++ TLP    LV+K     AA  ++   K +H  I     L   +R  +++V  Y   G
Sbjct: 51  PNNTTLP----LVLKAC---AAQNAVERGKSIHRSI-QGTDLMDDVRVGTAVVDFYCKCG 102

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
            V + R +FD MS+R   L+N ++  Y   G   +++ +   M R     P++ T   ++
Sbjct: 103 FVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGR-ENLRPNSRTMVALL 161

Query: 119 KACTDLAWRKLGIALHGRVLITG-FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
            AC   +  +LG  +HG  L  G FD +  V   LI  Y+ F +++    +FD M   ++
Sbjct: 162 LACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLLFDLMVVRNI 220

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSWN +ISGY+      +AL +F  ML   V+ DC +++  + AC  L  +++G+ IH+L
Sbjct: 221 VSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQL 280

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                  +++   NAL++MY   GS+  +  +F+ +  RD   W SMI+ YA  G    A
Sbjct: 281 AIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEA 340

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYY-LKRGRSLHAWTIKQNLECEVIVETALID 356
           + LF  MQ EGV+ +  T+  +LS C  L   L +G+SLHA  IK  +  +  +  AL+ 
Sbjct: 341 MDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLS 400

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY + N V+   ++F R      + WN ++     N L  +A ELF +M    ++PN  T
Sbjct: 401 MYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYT 460

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           + S+L A   +  L    +IH Y++++       + T L D+Y  CG   +A  +F   P
Sbjct: 461 IISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCP 520

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
             D+D++ W+ +IA Y  +     A+ LF  M+ S  +PN VT  + L + +H   L +G
Sbjct: 521 --DRDLISWNAMIASYVKNNQAHKALLLFHRMI-SEAEPNSVTIINVLSSFTHLATLPQG 577

Query: 537 LDLFNFMLENHQT----CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
             L  ++     +     S A+ +   + +  R G L  A ++ +T+P K     W A++
Sbjct: 578 QSLHAYVTRRGFSLGLDLSLANAF---ITMYARCGSLQSAENIFKTLP-KRNIISWNAMI 633

Query: 593 GACVIHG 599
               ++G
Sbjct: 634 AGYGMNG 640



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 146/521 (28%), Positives = 253/521 (48%), Gaps = 8/521 (1%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N+V+K  A        L  +  M  LG   P+N T P+V+KAC      + G ++H  +
Sbjct: 21  WNSVIKHQANLKNDQAILSAYTQMESLGVL-PNNTTLPLVLKACAAQNAVERGKSIHRSI 79

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
             T    D  VG  ++  Y   G V+ AR VFDAM +  VV WN ++ GY      +EA+
Sbjct: 80  QGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAM 139

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDM 256
           ++   M +  + P+  ++V++L AC    E+ +GR +H   +  G    N     AL+  
Sbjct: 140 LLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGF 199

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y++   +    L+FD M  R++V+W +MI+GY   GD   AL LF  M  + V+ + +T+
Sbjct: 200 YLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTM 258

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
              + AC+ L  LK G+ +H   IK     ++ +  AL++MY+    ++ S Q+F     
Sbjct: 259 LVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPN 318

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD-LQQAMN 435
           +    WN++++     G   +A++LF +M  E V+ ++ T+  +L     LA  L +  +
Sbjct: 319 RDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKS 378

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           +H ++I+ G      +   L+ +Y++   +ES  KIF    +K  DI+ W+ +I     +
Sbjct: 379 LHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDR--MKGVDIISWNTMILALARN 436

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
                A  LF+ M +S ++PN  T  S L AC     LD G  +  ++++ H        
Sbjct: 437 TLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMK-HSIEINQPL 495

Query: 556 YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
            T + D+    G    A DL    P +   + W A++ + V
Sbjct: 496 RTALADMYMNCGDEATARDLFEGCPDRDLIS-WNAMIASYV 535



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 162/327 (49%), Gaps = 10/327 (3%)

Query: 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
           +D   W S+I   A   + +  L  +  M+  GV PN+ T+  +L AC++   ++RG+S+
Sbjct: 16  KDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSI 75

Query: 336 HAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLA 395
           H      +L  +V V TA++D Y KC  V+ +  VF   S +  V WNA++ G V  G  
Sbjct: 76  HRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCY 135

Query: 396 RKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG-FLSVVEVSTG 454
            +A+ L R+M  E + PN  T+ +LL A    ++L+    +H Y +R G F S   V+T 
Sbjct: 136 EEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATA 195

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           LI  Y +   +     +F  + +  ++IV W+ +I+GY   G    A+ LF +M+   V+
Sbjct: 196 LIGFYLRF-DMRVLPLLFDLMVV--RNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVK 252

Query: 515 PNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEA 572
            + VT   A+ AC+  G L  G  +    ++        D Y    ++++    G L+ +
Sbjct: 253 FDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFV---EDLYILNALLNMYSNNGSLESS 309

Query: 573 YDLIRTMPLKPTHAVWGALLGACVIHG 599
           + L  ++P +    +W +++ A    G
Sbjct: 310 HQLFESVPNRDA-PLWNSMISAYAAFG 335


>gi|449522418|ref|XP_004168223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/631 (33%), Positives = 347/631 (54%), Gaps = 10/631 (1%)

Query: 35  LHAFIITSGPLF-THLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGA 90
           LH  ++ +G    +++ SSL+  Y     +   R +FD M +R+   + T++  Y++ G 
Sbjct: 71  LHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGD 130

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
              +  MF  M   G   P + T   ++   + L            +++ GF+ D  + N
Sbjct: 131 IDIAFSMFKQMRESG-IQPTSVTLLSLLPGISKLPLLLCLHC---LIILHGFESDLALSN 186

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            ++ MY   G +  AR++F+++    +VSWN+L+S Y K    +E L +   M    ++P
Sbjct: 187 SMVNMYGKCGRIADARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKP 246

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D  +  S L A     ++ +G+++H L+    L  +    +ALV +Y++C  ++ A  VF
Sbjct: 247 DKQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVF 306

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
              +E+DVV WT+MI+G   N     ALG+F  M    V+P++ T+ S L+AC+ L    
Sbjct: 307 KSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCD 366

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
            G S+H + ++Q +  ++  + +L+ MYAKCN ++ S  +F +  +K  V WNAI+AG  
Sbjct: 367 IGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIVAGHA 426

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
            NG   K +  F +M    + P+  T+ SLL A      L Q   IH +++R   +  + 
Sbjct: 427 KNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSLIPCIM 486

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
             T L+D+Y KCG+LE+A K F    +  +D+V WS +I GYG +G GE A+  + E + 
Sbjct: 487 TETALVDMYFKCGNLENAQKCFD--CMLQRDLVAWSTLIVGYGFNGKGEIALRKYSEFLG 544

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
           +G++PN V F S L ACSHGGL+ +GL ++  M ++ +     +H  C+VDLL RAG++D
Sbjct: 545 TGMEPNHVIFISVLSACSHGGLISKGLSIYESMTKDFRMSPNLEHRACVVDLLSRAGKVD 604

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630
           EAY   + M  +P+  V G LL AC ++G VELG+V A+ +FEL+P +PGN+V L+  Y+
Sbjct: 605 EAYSFYKMMFKEPSIVVLGMLLDACRVNGRVELGKVIARDMFELKPVDPGNFVQLANSYA 664

Query: 631 AVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           ++ RW   E     M   GL+K P  S IEV
Sbjct: 665 SMSRWDGVEKAWTQMRSLGLKKYPGWSSIEV 695



 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 176/560 (31%), Positives = 304/560 (54%), Gaps = 22/560 (3%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N+++   +  GA H  L+ ++ M +      D YT+P + KACT+L     G++LH  V
Sbjct: 17  FNSLVSRLSYQGAHHQVLQTYISMQKT-HTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           ++ G   D+++G+ LI+ Y  FG +   RKVFD M + +VV W T+I  Y +      A 
Sbjct: 76  VVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAF 135

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
            +F  M +SG++P   +++S+LP    + ++ +   +H L+       ++A  N++V+MY
Sbjct: 136 SMFKQMRESGIQPTSVTLLSLLPG---ISKLPLLLCLHCLIILHGFESDLALSNSMVNMY 192

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
            KCG + +AR +F+ +  RD+V+W S+++ Y+  G     L L Q M+ E ++P+  T  
Sbjct: 193 GKCGRIADARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFC 252

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           S LSA +    L+ G+ +H   +K  L  +  VE+AL+ +Y +C  +  +++VF  T++K
Sbjct: 253 SALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEK 312

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V W A+++G V N  A KA+ +F QM+   V+P+ ATL S L A A L       +IH
Sbjct: 313 DVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIH 372

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            Y++R G +  +     L+ +Y+KC  L+ +  IF+++   +KD+V W+ I+AG+  +G+
Sbjct: 373 GYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMV--EKDLVSWNAIVAGHAKNGY 430

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT-CSRADHY 556
               +  F EM +S ++P+ +T TS L AC   G L +G  + NF+L +    C   +  
Sbjct: 431 LSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSLIPCIMTE-- 488

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE--- 613
           T +VD+  + G L+ A      M L+     W  L+   V +G    GE+A +   E   
Sbjct: 489 TALVDMYFKCGNLENAQKCFDCM-LQRDLVAWSTLI---VGYGFNGKGEIALRKYSEFLG 544

Query: 614 --LEPENPGNYVLLSKLYSA 631
             +EP    N+V+   + SA
Sbjct: 545 TGMEP----NHVIFISVLSA 560



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 187/368 (50%), Gaps = 5/368 (1%)

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           S+N+L+S         + L  +  M K+  + D  +  S+  AC  L     G  +H+ V
Sbjct: 16  SFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               L  +    ++L+  Y K G ++  R VFD M +R+VV WT++I  Y+  GD+  A 
Sbjct: 76  VVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAF 135

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
            +F+ M+  G++P S+T+ SLL   S    L     LH   I    E ++ +  ++++MY
Sbjct: 136 SMFKQMRESGIQPTSVTLLSLLPGISK---LPLLLCLHCLIILHGFESDLALSNSMVNMY 192

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
            KC  +  + ++F     +  V WN++L+     G   + ++L + M +E ++P+  T  
Sbjct: 193 GKCGRIADARRLFESIGCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFC 252

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           S L A AI  DL+    +H  +++ G      V + L+ +Y +C  L+ A+K+F      
Sbjct: 253 SALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTT-- 310

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
           +KD+V+W+ +I+G   +   + A+ +F +M++S V+P+  T  S L AC+  G  D G  
Sbjct: 311 EKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGAS 370

Query: 539 LFNFMLEN 546
           +  ++L  
Sbjct: 371 IHGYVLRQ 378



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 156/329 (47%), Gaps = 7/329 (2%)

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           L+ + ++     ++ S+++  +  G     L  +  MQ    + ++ T  SL  AC++L 
Sbjct: 4   LIHESIAHGCTKSFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLN 63

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
               G SLH   +   L  +  + ++LI  YAK   + L  +VF    K+  VPW  I+ 
Sbjct: 64  LFSHGLSLHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIG 123

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
                G    A  +F+QM    ++P   TL SLLP    ++ L   + +HC +I +GF S
Sbjct: 124 SYSREGDIDIAFSMFKQMRESGIQPTSVTLLSLLPG---ISKLPLLLCLHCLIILHGFES 180

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            + +S  ++++Y KCG +  A ++F  I    +DIV W+ +++ Y   G  E  + L + 
Sbjct: 181 DLALSNSMVNMYGKCGRIADARRLFESIGC--RDIVSWNSLLSAYSKIGATEEILQLLQA 238

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M    ++P++ TF SAL A +  G L  G  +   ML++     +      +V  L R  
Sbjct: 239 MKIEDIKPDKQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYL-RCR 297

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACV 596
            LD AY + ++   K    +W A++   V
Sbjct: 298 CLDPAYKVFKSTTEKDV-VMWTAMISGLV 325


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/616 (34%), Positives = 324/616 (52%), Gaps = 66/616 (10%)

Query: 111 NYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR---- 166
           NY Y   +K C +   R     LH R++ T  + +TF+ N LI  Y   G++K AR    
Sbjct: 6   NY-YTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFD 64

Query: 167 ---------------------------KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
                                      +VFD+M  H VVSWN+L+SGY  N    E++ V
Sbjct: 65  HIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRV 124

Query: 200 FDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMIHE----------LVAGGRL----- 243
           ++ MLK G V  +  +  ++L        +++GR IH           L  G  L     
Sbjct: 125 YNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYA 184

Query: 244 ----------------GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
                            KNI  +N ++   ++C  + EA  +FD M E+D ++WT++I G
Sbjct: 185 KTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITG 244

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
              NG  + A+  F+ M  EG   +  T GS+L+AC     L  G+ +HA+ I+ + +  
Sbjct: 245 LTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDN 304

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           + V +AL+DMY KC  VK +  VF +   K  + W A+L G   NG + +AV +F  M  
Sbjct: 305 IFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQR 364

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
             + P+D TL S++ + A LA L++    H   +  G +  V VS  LI +Y KCGSLE 
Sbjct: 365 NEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEH 424

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           AH++F E+ I+D+  V W+ +++GY   G     +SLF+ M+  G+ P+ VTF   L AC
Sbjct: 425 AHQLFHEMKIRDE--VSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSAC 482

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           S  GL+++G   F  M++ H+     DHYTC++DLL RAGRL+EA + I  MP  P    
Sbjct: 483 SRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIG 542

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           W  LL +C ++GN+E+G+ AA+ L +LEP+NP +Y+LLS +Y+A  +W D   +R  M E
Sbjct: 543 WATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMRE 602

Query: 648 KGLRKAPAHSLIEVRN 663
            G++K P HS I+ +N
Sbjct: 603 MGVKKEPGHSWIKYKN 618



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 131/484 (27%), Positives = 242/484 (50%), Gaps = 36/484 (7%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++L+ AY   G++ +++ +FD M       +N+++  YA NG   +S++++  ML+ G  
Sbjct: 75  NTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSV 134

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
           N +  T+  ++   ++  +  LG  +HG++   G+    FVG+ L+ MY   G +  A +
Sbjct: 135 NLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANR 194

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS--------------------- 206
           +F+ + E ++V +NT+I+G  +  +  EA  +FD M +                      
Sbjct: 195 IFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEA 254

Query: 207 -------GVEPDCA---SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
                  G+E  C    +  SVL ACG    ++ G+ IH  +       NI   +AL+DM
Sbjct: 255 VDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDM 314

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y KC +V  A  VF +M  ++V++WT+M+ GY  NG    A+ +F  MQ   + P+  T+
Sbjct: 315 YCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTL 374

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
           GS++S+C++L  L+ G   H   +   L C V V  ALI +Y KC  ++ + Q+F     
Sbjct: 375 GSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKI 434

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN- 435
           +  V W A+++G    G A + + LF  ML   + P+  T   +L A +    +++  + 
Sbjct: 435 RDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHY 494

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
             C +  +    + +  T +ID+ S+ G LE A    +++P    D + W+ +++   ++
Sbjct: 495 FECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFS-PDAIGWATLLSSCRLN 553

Query: 496 GHGE 499
           G+ E
Sbjct: 554 GNLE 557


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/546 (35%), Positives = 324/546 (59%), Gaps = 3/546 (0%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           +++ C  L   + G  +H  +L +G   + ++ N L++MY   G +  AR+VFD++ + +
Sbjct: 53  LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRN 112

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           +VSW  +I  +       EA   ++ M  +G +PD  + VS+L A    + +++G+ +H 
Sbjct: 113 IVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHM 172

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            +    L        +LV MY KCG +++AR++FDR+ E++VVTWT +I GYA  G V  
Sbjct: 173 EIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDV 232

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           AL L + MQ   V PN +T  S+L  C++   L+ G+ +H + I+     E+ V  +LI 
Sbjct: 233 ALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLIT 292

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY KC  ++ + ++F+    +  V W A++ G    G   +A+ LFR+M  + ++P+  T
Sbjct: 293 MYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMT 352

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
             S+L + +  A LQ+   IH  L+  G+   V + + L+ +Y+KCGS++ A  +F++  
Sbjct: 353 FTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQ-- 410

Query: 477 IKDKDIVVWSVIIAG-YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
           + ++++V W+ II G    HG    A+  F +M + G++P++VTFTS L AC+H GL++E
Sbjct: 411 MSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEE 470

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           G   F  M  ++      +HY+C VDLLGRAG L+EA ++I +MP  P  +VWGALL AC
Sbjct: 471 GRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSAC 530

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
            +H +VE GE AA+ + +L+P++ G YV LS +Y+A  R++DAE VR VM+++ + K P 
Sbjct: 531 RVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPG 590

Query: 656 HSLIEV 661
            S IEV
Sbjct: 591 QSWIEV 596



 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 141/487 (28%), Positives = 261/487 (53%), Gaps = 8/487 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERS 74
           L+Q+ A  +S+   +++HA I+ SG     +L ++L+  Y   G +++ R +FD + +R+
Sbjct: 53  LLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRN 112

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
              +  +++ +     + ++ K +  M +L    PD  T+  ++ A T+    +LG  +H
Sbjct: 113 IVSWTAMIEAFVAGNKNLEAFKCYETM-KLAGCKPDKVTFVSLLNAFTNPELLQLGQKVH 171

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
             ++  G +++  VG  L+ MY   G++  AR +FD + E +VV+W  LI+GY +     
Sbjct: 172 MEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVD 231

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
            AL + + M ++ V P+  +  S+L  C     +E G+ +H  +     G+ +   N+L+
Sbjct: 232 VALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLI 291

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
            MY KCG + EAR +F  +  RDVVTWT+M+ GYA  G    A+ LF+ MQ +G++P+ +
Sbjct: 292 TMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKM 351

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T  S+L++CSS  +L+ G+ +H   +      +V +++AL+ MYAKC  +  +  VF + 
Sbjct: 352 TFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQM 411

Query: 375 SKKKTVPWNAILAG-CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
           S++  V W AI+ G C  +G  R+A+E F QM  + ++P+  T  S+L A   +  +++ 
Sbjct: 412 SERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEG 471

Query: 434 M-NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
             +     + YG   +VE  +  +D+  + G LE A  +   +P       VW  +++  
Sbjct: 472 RKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGP-SVWGALLSAC 530

Query: 493 GMHGHGE 499
            +H   E
Sbjct: 531 RVHSDVE 537



 Score =  232 bits (591), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 132/423 (31%), Positives = 212/423 (50%), Gaps = 15/423 (3%)

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243
           +S   K    KEAL + + M+  G          +L  C  L+ +E GR +H  +    +
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
             N    N L+ MY KCGS+ +AR VFD + +R++V+WT+MI  +        A   ++ 
Sbjct: 79  QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M+  G +P+ +T  SLL+A ++   L+ G+ +H   ++  LE E  V T+L+ MYAKC  
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGD 198

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           +  +  +F R  +K  V W  ++AG    G    A+EL   M    V PN  T  S+L  
Sbjct: 199 ISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQG 258

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
               A L+    +H Y+I+ G+   + V   LI +Y KCG LE A K+FS++P   +D+V
Sbjct: 259 CTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLP--HRDVV 316

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ ++ GY   G  + A++LF+ M Q G++P+++TFTS L +CS    L EG  +    
Sbjct: 317 TWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRI---- 372

Query: 544 LENHQTCSRADH------YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
              HQ    A +       + +V +  + G +D+A  +   M  +   A    + G C  
Sbjct: 373 ---HQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQ 429

Query: 598 HGN 600
           HG 
Sbjct: 430 HGR 432


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/665 (33%), Positives = 374/665 (56%), Gaps = 15/665 (2%)

Query: 7   HTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH---VSN 62
           HT P     V+K     A + S+   +++H  +   G      + ++L+  YG+   + +
Sbjct: 8   HTFP----FVLKAC---ADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKD 60

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
           V+ +FDEM ER    +N+V+ +++ +G   +++ +F  M     + P+  +   V+  C 
Sbjct: 61  VKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCA 120

Query: 123 DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT 182
            L     G  +H  V+ TG D    VGN L+ +Y   G VK +R+VFD + E + VSWN 
Sbjct: 121 GLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNA 180

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           +I+        ++AL +F  M+  GV+P+  +  S+LP    LK  + G+ IH       
Sbjct: 181 IITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFG 240

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
           L  +I   NAL+DMY K G   +A  VF+++ E+++V+W +M+  +A N     A+ L +
Sbjct: 241 LESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVR 300

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            MQ +G  PNS+T  ++L AC+ + +L+ G+ +HA  I+     ++ V  AL DMYAKC 
Sbjct: 301 QMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCG 360

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            + L+ +VF + S +  V +N ++ G        +++ LF +M ++ ++ +  +   ++ 
Sbjct: 361 CLNLARRVF-KISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVIS 419

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A A LA L+Q   +H   +R    + + ++  L+D Y KCG ++ A K+F +IP   +D 
Sbjct: 420 ACANLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCGRIDLAGKVFRQIP--SRDT 477

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
             W+ +I GYGM G    A++LF+ M + GV+ + V++ + L ACSHGGL++EG   F  
Sbjct: 478 ASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLSACSHGGLVEEGKKYFEH 537

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           M   +   ++  HY C+VDLLGRAG ++EA  LI ++P++P   VWGALLGAC IHG +E
Sbjct: 538 MQVQNIKPTQM-HYACMVDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHGYIE 596

Query: 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           L   AA+ LF+L+P++ G Y +LS +Y+   +W +A  VR +M  +G +K P  S +++ 
Sbjct: 597 LAHWAAEHLFKLKPQHSGYYSVLSNMYAEAGKWDEANQVRKLMKSRGAKKNPGCSWVQID 656

Query: 663 NILTA 667
           N + A
Sbjct: 657 NQVHA 661



 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 184/515 (35%), Positives = 278/515 (53%), Gaps = 12/515 (2%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           D++T+P V+KAC D    + G  +HG V   GFD D FVGN L+  Y N G +K  ++VF
Sbjct: 6   DDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRVF 65

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM-LKSGVEPDCASVVSVLPACGYLKEI 228
           D M E  VVSWN++I  +  + +  EA+ +F  M L+SG  P+  S+VSVLP C  L++ 
Sbjct: 66  DEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDG 125

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
             GR IH  V    L   +   NALVD+Y KCG V ++R VFD +SER+ V+W ++I   
Sbjct: 126 VTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSL 185

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
           A     ++AL +F+LM   GV+PNS+T  S+L     L     G+ +H ++++  LE ++
Sbjct: 186 AYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGLESDI 245

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            V  ALIDMYAK      +  VF +  +K  V WNA++A    N L   AV+L RQM  +
Sbjct: 246 FVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQMQAD 305

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
              PN  T  ++LPA A +  L+    IH   IR G    + VS  L D+Y+KCG L  A
Sbjct: 306 GEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKCGCLNLA 365

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            ++F    I  +D V ++++I GY    +   ++ LF EM   G++ + V++   + AC+
Sbjct: 366 RRVFK---ISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVISACA 422

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           +   L +G ++    +  H   +       ++D   + GR+D A  + R +P + T A W
Sbjct: 423 NLAALKQGKEVHGLAVRKHLH-THLFIANALLDFYIKCGRIDLAGKVFRQIPSRDT-ASW 480

Query: 589 GALLGACVIHGNVELGEVA-AKWLFELEPENPGNY 622
            ++     I G   LGE+  A  LFE   E+   Y
Sbjct: 481 NSM-----ILGYGMLGELTIAINLFEAMKEDGVEY 510



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 117/334 (35%), Positives = 180/334 (53%), Gaps = 3/334 (0%)

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           GV  D  +   VL AC     ++ GR IH +V       ++   N L+  Y  CG + + 
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE-GVRPNSLTIGSLLSACSS 325
           + VFD M ERDVV+W S+I  ++++G    A+ LF  M    G RPN ++I S+L  C+ 
Sbjct: 62  KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAG 121

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           L     GR +H + +K  L+ +V V  AL+D+Y KC  VK S +VF   S++  V WNAI
Sbjct: 122 LEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAI 181

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           +    +    + A+E+FR M+   V+PN  T +S+LP    L        IH + +R+G 
Sbjct: 182 ITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFGL 241

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
            S + V+  LID+Y+K G    A  +F++  I +K+IV W+ ++A +  +     AV L 
Sbjct: 242 ESDIFVANALIDMYAKSGRSLQASNVFNQ--IGEKNIVSWNAMVANFAQNRLELAAVDLV 299

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
           ++M   G  PN VTFT+ L AC+  G L  G ++
Sbjct: 300 RQMQADGEIPNSVTFTNVLPACARIGFLRPGKEI 333


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/600 (36%), Positives = 312/600 (52%), Gaps = 72/600 (12%)

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H  +L TG   DT +   L++ Y N      A  V D + E +V S++TLI  + K    
Sbjct: 36  HAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQF 95

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
             AL  F  ML  G+ PD   + S + AC  L  ++  R +H + +      +    ++L
Sbjct: 96  HHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSL 155

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           V MY+KC  + +A  VFDRM E DVV+W++++  YA  G V  A  LF  M   GV+PN 
Sbjct: 156 VHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNL 215

Query: 314 L-----------------------------------TIGSLLSACSSLYYLKRGRSLHAW 338
           +                                   TI S+L A   L  L  G  +H +
Sbjct: 216 ISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGY 275

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVF------------------ARTSKKKT- 379
            IKQ L  +  V +ALIDMY KC+      QVF                  +R  + ++ 
Sbjct: 276 VIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESS 335

Query: 380 ----------------VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
                           V W +++A C  NG   +A+ELFR+M +  V+PN  T+  LLPA
Sbjct: 336 LRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPA 395

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
              +A L      HC+ +R G  + V V + LID+Y+KCG ++++   F  IP K+  +V
Sbjct: 396 CGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKN--LV 453

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ +IAGY MHG  + A+ +F  M +SG +P+ ++FT  L ACS  GL +EG   FN M
Sbjct: 454 CWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSM 513

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
              +   +R +HY C+V LL RAG+L++AY +IR MP+ P   VWGALL +C +H NV L
Sbjct: 514 SSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSL 573

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           GEVAA+ LFELEP NPGNY+LLS +Y++   W +   VRD+M  KGLRK P  S IEV+N
Sbjct: 574 GEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKN 633



 Score =  248 bits (632), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 173/582 (29%), Positives = 280/582 (48%), Gaps = 84/582 (14%)

Query: 24  AATKSIAGTKQLHAFIITSGPLF--THLRSSLVRAYGH---VSNVRILFDEMSERSSFLY 78
           + T S++ T+Q HA I+ +G LF  THL + L+  Y +    ++  ++ D + E + F +
Sbjct: 24  STTASLSQTRQAHAHILKTG-LFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSF 82

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
           +T++  +++    H +L  F  ML  G   PDN   P  +KAC  L+  K    +HG   
Sbjct: 83  STLIYAFSKFHQFHHALSTFSQMLTRG-LMPDNRVLPSAVKACAGLSALKPARQVHGIAS 141

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
           ++GFD D+FV + L+ MY+   +++ A +VFD M+E  VVSW+ L++ Y +     EA  
Sbjct: 142 VSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKR 201

Query: 199 VFDWMLKSGV-----------------------------------EPDCASVVSVLPACG 223
           +F  M  SGV                                   EPD  ++ SVLPA G
Sbjct: 202 LFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVG 261

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD------ 277
            L+++ MG +IH  V    L  +    +AL+DMY KC   +E   VFD+M   D      
Sbjct: 262 DLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNA 321

Query: 278 -----------------------------VVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
                                        VV+WTSMI   + NG    AL LF+ MQ  G
Sbjct: 322 FIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAG 381

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           V+PNS+TI  LL AC ++  L  G++ H +++++ +  +V V +ALIDMYAKC  ++ S 
Sbjct: 382 VKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASR 441

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
             F     K  V WNA++AG   +G A++A+E+F  M     +P+  +   +L A +   
Sbjct: 442 ICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSG 501

Query: 429 DLQQ-AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
             ++ +   +    +YG  + VE    ++ + S+ G LE A+ +   +P+ + D  VW  
Sbjct: 502 LTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPV-NPDACVWGA 560

Query: 488 IIAGYGMHGH---GETAVSLFKEMVQSGVQPNEVTFTSALHA 526
           +++   +H +   GE A     E+  S   P      S ++A
Sbjct: 561 LLSSCRVHNNVSLGEVAAEKLFELEPS--NPGNYILLSNIYA 600



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 131/267 (49%), Gaps = 4/267 (1%)

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
           R L D+  E +   + +++   +QNG   ++L++F  M ++    P++ T P ++ AC +
Sbjct: 340 RQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREM-QIAGVKPNSVTIPCLLPACGN 398

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
           +A    G A H   L  G   D +VG+ LI MY   G ++A+R  FD +   ++V WN +
Sbjct: 399 IAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAV 458

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR-MIHELVAGGR 242
           I+GY  +  AKEA+ +FD M +SG +PD  S   VL AC      E G    + + +   
Sbjct: 459 IAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYG 518

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVR-NALGL 300
           +   +  +  +V +  + G + +A  +  RM    D   W ++++   ++ +V    +  
Sbjct: 519 IEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAA 578

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +L + E   P +  + S + A   ++
Sbjct: 579 EKLFELEPSNPGNYILLSNIYASKGMW 605


>gi|147794059|emb|CAN66615.1| hypothetical protein VITISV_022030 [Vitis vinifera]
          Length = 818

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/593 (35%), Positives = 332/593 (55%), Gaps = 14/593 (2%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GH 59
           P  +T P        +++      S+A  + +H  I   G  L   + SSL++ Y   G 
Sbjct: 145 PDKYTFPY-------VIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGC 197

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           + + R LFD M  +   L+N ++  Y +NG   ++  +F+ M R  E NP++ T+  V+ 
Sbjct: 198 IHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRT-ETNPNSVTFACVLS 256

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
            C        G  LHG V+ +G +MD+ V N L+AMY   G +  AR++FD M +  +V+
Sbjct: 257 VCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVT 316

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WN +ISGY +N +  EA  +F  M+ +G++PD  +  S LP       +  G+ IH  + 
Sbjct: 317 WNGMISGYVQNGFMDEASCLFHEMISAGMKPDSITFSSFLPLLSEGATLRQGKEIHCYII 376

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
              +  ++   +AL+D+Y KC  V  A  +FD+ +  D+V  T+MI+GY LNG   NAL 
Sbjct: 377 RNGVSLDVFLKSALIDIYFKCRDVEMAHKIFDQRTPVDIVVCTAMISGYVLNGMNNNALE 436

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           +F+ +  E +R NS+T+ S+L AC+ L  L  G+ LH   +K        V +A++DMYA
Sbjct: 437 IFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYA 496

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           KC  + L+ Q F   S K  V WN+++  C  NG   +A++LFRQM +   + +  ++++
Sbjct: 497 KCGKLDLAHQTFIGISXKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISA 556

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
            L A A L  L     IH +++R  F S +   + LID+YSKCG+L+ A ++F    +++
Sbjct: 557 ALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDM--MEE 614

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
           K+ V W+ IIA YG HG  + +++LF  M+  G+QP+ VTF + + AC H G +DEG+  
Sbjct: 615 KNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHY 674

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           F  M E     +R +HY C+VDL GRAGRL+EA+ +I +MP  P   VWG  L
Sbjct: 675 FRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGLYL 727



 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 185/593 (31%), Positives = 311/593 (52%), Gaps = 13/593 (2%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAY---GHVSNVRILFDEMS 71
           ++ ++Q       ++  +Q HA ++ +G  +   L + L+  Y   G   + + +F ++ 
Sbjct: 49  LVSILQTCTDPSGLSHGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
              S  +N +++ +   G    +L  +  ML  G   PD YT+P VIKAC  L    LG 
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTL-PDKYTFPYVIKACGGLNSVALGR 167

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H ++   GF++D FVG+ LI  Y   G +  AR +FD M     V WN +++GY KN 
Sbjct: 168 VVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNG 227

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
               A  VF  M ++   P+  +   VL  C     I  G  +H LV    L  +    N
Sbjct: 228 DWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVAN 287

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            L+ MY KCG + +AR +FD M + D+VTW  MI+GY  NG +  A  LF  M   G++P
Sbjct: 288 TLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISAGMKP 347

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +S+T  S L   S    L++G+ +H + I+  +  +V +++ALID+Y KC  V+++ ++F
Sbjct: 348 DSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMAHKIF 407

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
            + +    V   A+++G V NG+   A+E+FR +L E +  N  TL S+LPA A LA L 
Sbjct: 408 DQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALT 467

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               +H ++++ G      V + ++D+Y+KCG L+ AH+ F  I I  KD V W+ +I  
Sbjct: 468 LGKELHGHILKNGHGGSCYVGSAIMDMYAKCGKLDLAHQTF--IGISXKDAVCWNSMITS 525

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
              +G  E A+ LF++M  +G + + V+ ++AL AC++   L  G ++  FM+   +   
Sbjct: 526 CSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMM---RGAF 582

Query: 552 RADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           R+D +  + ++D+  + G LD A  +   M  K     W +++ A   HG ++
Sbjct: 583 RSDLFAESALIDMYSKCGNLDLACRVFDMMEEK-NEVSWNSIIAAYGNHGRLK 634


>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1005

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 226/650 (34%), Positives = 359/650 (55%), Gaps = 13/650 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAYG---HVSNVRILFDEMSER- 73
           L++     + I    +LH  ++  G   T  + ++LV  Y    H+S  + LFD   E+ 
Sbjct: 168 LLKACGKLRDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKG 227

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV--IKACTDLAWRKLGI 131
            + L+N+++  Y+ +G S ++L++F  M   G   P + +Y IV  + AC   ++ KLG 
Sbjct: 228 DAVLWNSILSSYSTSGKSLETLQLFREMQMTG---PASNSYTIVSALTACEGFSYAKLGK 284

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H  VL +    + +V N LIAMY   G++  A ++   M    VV+WN+LI GY +N 
Sbjct: 285 EIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNL 344

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
             KEAL  F  M+ +G +PD  S+ SV+ A G L  +  G  +H  V       N+   N
Sbjct: 345 MYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGN 404

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            L+DMY KC         F  M E+D+++WT++I GYALN     AL LF+ +  + +  
Sbjct: 405 TLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEI 464

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           + + +GS+L ACS L  +   + +H   +++ L  + +++  L+D+Y KC  +  + +VF
Sbjct: 465 DEMMLGSILRACSVLKSMLIVKEIHCHILRKGL-IDTVIQNELVDVYGKCRNMGYASRVF 523

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
                K  V W ++++    NG   +AVELFR+M    +  +   L  +L A A L+ L+
Sbjct: 524 ESIKGKDVVSWTSMISSSALNGNENEAVELFRRMAETGLLADSVALLCILSAAASLSALK 583

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           +   IH YL+R GF     ++  ++D+Y+ CG L+SA  +F  I  + K ++ ++ +I  
Sbjct: 584 KGREIHGYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRI--ERKGLLQYTSMINA 641

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           YGMHG G+ +V LF +M    V P+ ++F + L+ACSH GLLDEG      M   ++   
Sbjct: 642 YGMHGCGKASVELFNKMRHENVSPDHISFLALLYACSHAGLLDEGRRFLKIMELEYKLEP 701

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
             +HY C+VD+LGRA  + EA++ ++ M  +PT  VW ALL AC  H   E+GE+AA+ L
Sbjct: 702 WPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTTEVWCALLAACRSHSEKEIGEIAAQRL 761

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            ELEP+NPGN VL+S +++   RW D E VR  M   G+ K P  S IE+
Sbjct: 762 LELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEM 811



 Score =  265 bits (677), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 182/602 (30%), Positives = 298/602 (49%), Gaps = 52/602 (8%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FDEM +R++F +N ++  Y  NG    +L ++  M R+     D Y++P+++KAC  L 
Sbjct: 118 VFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNM-RVEGVPLDLYSFPVLLKACGKLR 176

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH-SVVSWNTLI 184
             + G  LH  ++  GF+   F+ N L++MY     + AA+++FDA  E    V WN+++
Sbjct: 177 DIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLWNSIL 236

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           S Y  +  + E L +F  M  +G   +  ++VS L AC      ++G+ IH  V      
Sbjct: 237 SSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLKSTHS 296

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
             +   NAL+ MY +CG + EA  +   M+  DVVTW S+I GY  N   + AL  F  M
Sbjct: 297 FEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQFFCDM 356

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
              G +P+ +++ S+++A   L  L  G  LHA+ IK   +  ++V   LIDMY+KCNL 
Sbjct: 357 IAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKCNLT 416

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
               + F    +K  + W  I+AG   N    +A++LFR +  + +E ++  L S+L A 
Sbjct: 417 CYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGSILRAC 476

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           ++L  +     IHC+++R G +  V +   L+D+Y KC ++  A ++F    IK KD+V 
Sbjct: 477 SVLKSMLIVKEIHCHILRKGLIDTV-IQNELVDVYGKCRNMGYASRVFES--IKGKDVVS 533

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGGLL 533
           W+ +I+   ++G+   AV LF+ M ++G+  + V     L A +           HG LL
Sbjct: 534 WTSMISSSALNGNENEAVELFRRMAETGLLADSVALLCILSAAASLSALKKGREIHGYLL 593

Query: 534 DEGLDLFNFMLENHQTCSRADHYTC---------IVDLLGRAGRLD-------------- 570
            +G     F LE     +  D Y C         + D + R G L               
Sbjct: 594 RKG-----FCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCG 648

Query: 571 ----EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL---FELEPENPGNYV 623
               E ++ +R   + P H  + ALL AC   G ++ G    K +   ++LEP  P +YV
Sbjct: 649 KASVELFNKMRHENVSPDHISFLALLYACSHAGLLDEGRRFLKIMELEYKLEPW-PEHYV 707

Query: 624 LL 625
            L
Sbjct: 708 CL 709



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/451 (30%), Positives = 232/451 (51%), Gaps = 32/451 (7%)

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
           +  KVFD M + +  +WN LI  Y  N     AL ++  M   GV  D  S   +L ACG
Sbjct: 114 SQEKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFPVLLKACG 173

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAW--NALVDMYVKCGSVNEARLVFDRMSER-DVVT 280
            L++I  G  +H ++   +LG N   +  NALV MY K   ++ A+ +FD   E+ D V 
Sbjct: 174 KLRDIRSGTELHCMLV--KLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVL 231

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           W S+++ Y+ +G     L LF+ MQ  G   NS TI S L+AC    Y K G+ +HA  +
Sbjct: 232 WNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVL 291

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
           K     EV V  ALI MYA+C  +  + ++    +    V WN+++ G V N + ++A++
Sbjct: 292 KSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQ 351

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
            F  M+    +P++ +L S++ A   L++L   M +H Y+I++G+ S + V   LID+YS
Sbjct: 352 FFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYS 411

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           KC       + F  + + +KD++ W+ IIAGY ++     A+ LF+++ +  ++ +E+  
Sbjct: 412 KCNLTCYMGRAF--LMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMML 469

Query: 521 TSALHACS-----------HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
            S L ACS           H  +L +G  L + +++N            +VD+ G+   +
Sbjct: 470 GSILRACSVLKSMLIVKEIHCHILRKG--LIDTVIQNE-----------LVDVYGKCRNM 516

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             A  +  ++  K     W +++ +  ++GN
Sbjct: 517 GYASRVFESIKGKDV-VSWTSMISSSALNGN 546



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 155/301 (51%), Gaps = 4/301 (1%)

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           I A+  L+++  K  ++++ + VFD M +R    W ++I  Y  NG+  +AL +++ M+ 
Sbjct: 97  IEAYAYLLELCGKSRALSQEK-VFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRV 155

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
           EGV  +  +   LL AC  L  ++ G  LH   +K        +  AL+ MYAK + +  
Sbjct: 156 EGVPLDLYSFPVLLKACGKLRDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSA 215

Query: 367 SFQVF-ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
           + ++F A   K   V WN+IL+    +G + + ++LFR+M +     N  T+ S L A  
Sbjct: 216 AKRLFDASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACE 275

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
             +  +    IH  +++      V V   LI +Y++CG +  A +I     + + D+V W
Sbjct: 276 GFSYAKLGKEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILR--LMNNADVVTW 333

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I GY  +   + A+  F +M+ +G +P+EV+ TS + A      L  G++L  ++++
Sbjct: 334 NSLIKGYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIK 393

Query: 546 N 546
           +
Sbjct: 394 H 394


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/662 (33%), Positives = 350/662 (52%), Gaps = 7/662 (1%)

Query: 7   HTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAY---GHVSN 62
           + LP      + L+ +    K +   K +HA ++ +G   + +L +SLV  Y   G +  
Sbjct: 4   YLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVK 63

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKM-FLGMLRLGEYNPDNYTYPIVIKAC 121
            +++F+ ++ +    +N ++  Y+Q G    S  M     +R     P+ +T+  V  A 
Sbjct: 64  AKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAA 123

Query: 122 TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWN 181
           +       G+  H   + T    D FVG+ LI MY   G +  ARKVFD + E + VSW 
Sbjct: 124 SSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWA 183

Query: 182 TLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG 241
           T+ISGY     A EA  +F  M +     D     SVL A      +  G+ IH L    
Sbjct: 184 TIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKN 243

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
            L    +  NALV MY KCG +++A   F+   ++D +TW++MI GYA  GD   AL LF
Sbjct: 244 GLLSIASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLF 303

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
             M   G +P+  T   +++ACS +  L+ G+ +H +++K   EC++   TAL+DMYAKC
Sbjct: 304 YNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFMTALVDMYAKC 363

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
             +  + + F    +   V W ++++G   NG    A+ L+ +M +E + P++ T+ S+L
Sbjct: 364 GSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVL 423

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            A + LA L+Q   IH   I+YGF   V + + L  +Y+KCGSLE  + +F  +P   +D
Sbjct: 424 RACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMP--SRD 481

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           I+ W+ +I+G   +G G  A+ LF+E+     +P+ VTF + L ACSH GL++ G   F 
Sbjct: 482 IMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFR 541

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            ML+      R +HY C+VD+L RAG+L E  + I +  +     +W  LLGAC  + N 
Sbjct: 542 MMLDEFGIVPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNYRNY 601

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           ELG  A + L EL  +    Y+LLS +Y+A+ R  D E VR +M  +G+ K P  S IE+
Sbjct: 602 ELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLRGVNKEPGCSWIEL 661

Query: 662 RN 663
           ++
Sbjct: 662 KS 663



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 4/126 (3%)

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           M + ++ P   +   LL       DLQ+   IH  L+R G  S V ++  L+++Y+KCGS
Sbjct: 1   MNLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGS 60

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH-GETAV-SLFKEMVQSGVQPNEVTFTS 522
           +  A  +F  I   +KD+V W+ +I GY   G  G + V  LF+ M      PN  TF+ 
Sbjct: 61  IVKAKLVFESIT--NKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSG 118

Query: 523 ALHACS 528
              A S
Sbjct: 119 VFTAAS 124


>gi|242066256|ref|XP_002454417.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
 gi|241934248|gb|EES07393.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
          Length = 703

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 223/655 (34%), Positives = 362/655 (55%), Gaps = 16/655 (2%)

Query: 18  KLVQQYAATKSIA-GTKQLHAFIITSGPLFT-HLRSSLVRAYGHVSNVRILFDEMSERSS 75
           KL++  AAT S       LHA ++ SG L + H  ++ V A+      R LFDE    + 
Sbjct: 6   KLLEAAAATISTPLAAAHLHANLLRSGLLHSSHHLTAHVLAWYPPGLARDLFDEFPSPTP 65

Query: 76  FLYNTVMKMYAQNGASHDSLKMFLGMLRLG---EYNPDNYTYPIVIKACTDLAWRKLGIA 132
            L N +++       +H   + +   + LG       D +T+ ++++AC  L     G A
Sbjct: 66  RLANALLR-------AHIRARQWRAAILLGPRLRVRLDGFTFSLLLRACAALPSLAHGRA 118

Query: 133 LHGRVLIT-GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
           +H   + +     D FV   ++ MY   G++  A   +  + +  +V   ++++GY +N 
Sbjct: 119 VHAVAIRSCTASEDAFVATAIVQMYARCGDMVGAINAYGVLEKPDIVLRTSVVTGYEQNG 178

Query: 192 YAKEALVVFDW-MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
            A+EAL  F   ++  GV     ++VS + A   L  +  G+  H  V    LG ++A  
Sbjct: 179 MAEEALEFFARNVVGQGVMLTPVTLVSAMSAAAQLGHVRKGQACHAYVVRNSLGYDLALV 238

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           N ++  YVK G    +  +F+ M++RDV+TW+ MI GY  +GD    L +++ M    V+
Sbjct: 239 NTVLSFYVKIGDFQASMRLFEGMTDRDVITWSCMIKGYVQHGDAHEGLRMYREMVKARVQ 298

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           PNS+T+ S+L AC+ +   + G+ +H   +    E EV V TAL+DMY KC+  + +  +
Sbjct: 299 PNSVTLVSVLQACALVVDAEEGKRVHRVAVSIGCELEVGVATALVDMYMKCSCHEEAMCL 358

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F R  KK  V W A++ G   N L  +++ +F+ ML++   P+  T+  +L A +     
Sbjct: 359 FHRMPKKDVVAWAAVIGGLTQNELPGESLHVFKCMLLDDHVPDAITMVKVLAACSEFGGT 418

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
           + A+ +H YL+R GF +   V+  L+D+YSKCG ++SA ++F      +KDIVVW  +IA
Sbjct: 419 RLAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDIDSAVRVFE--GTTEKDIVVWGSMIA 476

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           GYG HG G+ AV+L++ M+ S +QPN VTF S L ACSH GL+ EG+ +F+ M +     
Sbjct: 477 GYGAHGLGQEAVALYQRMIASSIQPNSVTFVSVLSACSHSGLVQEGIQIFDSMTQVFGVV 536

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
             A+H + +VDLLGRAG L EA   IR M  +     W ALL AC  H N ++ +VAAK 
Sbjct: 537 PNAEHQSAMVDLLGRAGELQEAIRFIRGMDGRAVAHTWCALLAACREHNNTKMSKVAAKS 596

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           L +L+P++ G Y LL+ +Y+   +W+  ++ RD++  + LRK P +S +EV N++
Sbjct: 597 LLKLDPDHVGYYNLLTNIYAYDEKWESVKDTRDMVRGRDLRKVPGYSSVEVGNLV 651


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/596 (34%), Positives = 323/596 (54%), Gaps = 3/596 (0%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LF  M E++   +N ++  YAQ G     LK+F  M +  E     +T   V+K C +  
Sbjct: 7   LFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKM-KECETKFSKFTLSTVLKGCANTG 65

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             + G  LH   L +G ++D F+G  L+ MY   G V  A KVF  +    VV+W+ +I+
Sbjct: 66  SLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMIT 125

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           G  +  + +EA  +F  M + G  P+  ++ S++     + ++  G+ IH  +       
Sbjct: 126 GLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFES 185

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           +    N L+ MY+K   V +   VF+ M+  D+V+W ++++G+  +        +F  M 
Sbjct: 186 DNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQML 245

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            EG +PN  T  S+L +CSSL   + G+ +HA  IK + + +  V TAL+DMYAK   ++
Sbjct: 246 LEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLE 305

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            +   F R   +    W  I++G      A KAV+ FRQM  E ++PN+ TL S L   +
Sbjct: 306 DAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCS 365

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            +A L+    +H   ++ G    + V + L+D+Y KCG +E A  IF    +  +DIV W
Sbjct: 366 HMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFK--GLISRDIVSW 423

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + II+GY  HG GE A+  F+ M+  G+ P+E TF   L ACS  GL++EG   F+ M +
Sbjct: 424 NTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSK 483

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
            +      +HY C+VD+LGRAG+ +E    I  M L P   +W  +LGAC +HGNV+ GE
Sbjct: 484 IYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGE 543

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            AAK LFE+EP    +Y+LLS ++++  RW D  N+R +M  +G++K P  S +EV
Sbjct: 544 KAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEV 599



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 150/493 (30%), Positives = 245/493 (49%), Gaps = 10/493 (2%)

Query: 24  AATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYN 79
           A T S+   K LHA  + SG  +   L  SLV  Y   G V +   +F ++       ++
Sbjct: 62  ANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWS 121

Query: 80  TVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLI 139
            ++    Q G   ++ ++F  M R G   P+ +T   ++   T++   + G ++HG +  
Sbjct: 122 AMITGLDQQGHGQEAAELFHLMRRKGA-RPNQFTLSSLVSTATNMGDLRYGQSIHGCICK 180

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
            GF+ D  V N LI MYM    V+   KVF+AM    +VSWN L+SG++ +        +
Sbjct: 181 YGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRI 240

Query: 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVK 259
           F  ML  G +P+  + +SVL +C  L + E G+ +H  +       +     ALVDMY K
Sbjct: 241 FYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAK 300

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
              + +A + FDR+  RD+ +WT +I+GYA       A+  F+ MQ EG++PN  T+ S 
Sbjct: 301 ARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASC 360

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           LS CS +  L+ GR LHA  +K     ++ V +AL+D+Y KC  ++ +  +F     +  
Sbjct: 361 LSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDI 420

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           V WN I++G   +G   KA+E FR ML E + P++AT   +L A + +  +++       
Sbjct: 421 VSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDS 480

Query: 440 LIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH- 497
           + + YG    +E    ++DI  + G      KIF E        ++W  ++    +HG+ 
Sbjct: 481 MSKIYGINPSIEHYACMVDILGRAGKFNEV-KIFIEEMNLTPYSLIWETVLGACKLHGNV 539

Query: 498 --GETAVSLFKEM 508
             GE A     EM
Sbjct: 540 DFGEKAAKKLFEM 552



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 141/446 (31%), Positives = 224/446 (50%), Gaps = 20/446 (4%)

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
           A ++F  M E + VSWN L++GY +    K+ L +F  M +   +    ++ +VL  C  
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAW--NALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
              +  G+++H L    R G  I  +   +LVDMY KCG+V +A  VF ++   DVV W+
Sbjct: 64  TGSLREGKVLHALAL--RSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWS 121

Query: 283 SMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           +MI G    G  + A  LF LM+ +G RPN  T+ SL+S  +++  L+ G+S+H    K 
Sbjct: 122 AMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKY 181

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
             E + +V   LI MY K   V+   +VF   +    V WNA+L+G   +    +   +F
Sbjct: 182 GFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIF 241

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
            QML+E  +PN  T  S+L + + L D +    +H ++I+        V T L+D+Y+K 
Sbjct: 242 YQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKA 301

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
             LE A   F  +   ++DI  W+VII+GY      E AV  F++M + G++PNE T  S
Sbjct: 302 RCLEDAGVAFDRLV--NRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLAS 359

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY------TCIVDLLGRAGRLDEAYDLI 576
            L  CSH   L+ G  L       H    +A H+      + +VDL G+ G ++ A  + 
Sbjct: 360 CLSGCSHMATLENGRQL-------HAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIF 412

Query: 577 RTMPLKPTHAVWGALLGACVIHGNVE 602
           + +  +     W  ++     HG  E
Sbjct: 413 KGLISRDI-VSWNTIISGYSQHGQGE 437



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 189/385 (49%), Gaps = 18/385 (4%)

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           A  +F  M E++ V+W +++NGYA  GD +  L LF  M+    + +  T+ ++L  C++
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
              L+ G+ LHA  ++   E +  +  +L+DMY+KC  V  + +VF +      V W+A+
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           + G    G  ++A ELF  M  +   PN  TL+SL+     + DL+   +IH  + +YGF
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGF 183

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
            S   VS  LI +Y K   +E  +K+F    + + D+V W+ +++G+           +F
Sbjct: 184 ESDNLVSNPLIMMYMKSRCVEDGNKVFE--AMTNPDLVSWNALLSGFYDSQTCGRGPRIF 241

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDE--GLDLFNFMLENHQTCSRADHY--TCIVD 561
            +M+  G +PN  TF S L +CS   LLD   G  +   +++N    S  D +  T +VD
Sbjct: 242 YQMLLEGFKPNMFTFISVLRSCS--SLLDPEFGKQVHAHIIKNS---SDDDDFVGTALVD 296

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE--NP 619
           +  +A  L++A      +  +   + W  ++     +   +  E A K+  +++ E   P
Sbjct: 297 MYAKARCLEDAGVAFDRLVNRDIFS-WTVIISG---YAQTDQAEKAVKYFRQMQREGIKP 352

Query: 620 GNYVLLSKLYSAVRRWKDAENVRDV 644
             Y L S L S        EN R +
Sbjct: 353 NEYTLASCL-SGCSHMATLENGRQL 376



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 94/173 (54%), Gaps = 2/173 (1%)

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           ++L+ ++F    +K  V WNA+L G    G  +K ++LF +M     + +  TL+++L  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
            A    L++   +H   +R G      +   L+D+YSKCG++  A K+F++  I++ D+V
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTK--IRNPDVV 118

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
            WS +I G    GHG+ A  LF  M + G +PN+ T +S +   ++ G L  G
Sbjct: 119 AWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYG 171


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/638 (34%), Positives = 354/638 (55%), Gaps = 15/638 (2%)

Query: 33  KQLHAFIITSGPLFTHLR--SSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQ 87
           +Q+H   +  G L  H+   +SLV  Y    NV   R +FDEM ER+   + +++  Y+ 
Sbjct: 113 RQVHCQCVKFG-LVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSW 171

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NG      ++F  M   G   P+ YT   VI A  +     +G+ +H  V+  GF+    
Sbjct: 172 NGLYGYVWELFCQMQYEGVL-PNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIP 230

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           V N LI++Y   G ++ AR VFD M     V+WN++I+GY +N    E   +F+ M  +G
Sbjct: 231 VFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAG 290

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           V+P   +  SV+ +C  L+E+ + +++           +     AL+    KC  +++A 
Sbjct: 291 VKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDAL 350

Query: 268 LVFDRMSE-RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
            +F  M E ++VV+WT+MI+G   NG    A+ LF  M+ EGV+PN  T  ++L+    +
Sbjct: 351 SLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT----V 406

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
           +Y      +HA  IK N E    V TAL+D Y K      + +VF     K  + W+A+L
Sbjct: 407 HYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAML 466

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI-LADLQQAMNIHCYLIRYGF 445
           AG    G   +A +LF Q++ E ++PN+ T +S++ A A   A  +Q    H Y I+   
Sbjct: 467 AGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRL 526

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
            + + VS+ L+ +Y+K G+++SAH++F     K++D+V W+ +I+GY  HG  + A+ +F
Sbjct: 527 NNALCVSSALVTMYAKRGNIDSAHEVFKRQ--KERDLVSWNSMISGYSQHGQAKKALEVF 584

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
            EM +  +  + VTF   + AC+H GL+++G   FN M+ +H       HY+C++DL  R
Sbjct: 585 DEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSR 644

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           AG L++A  +I  MP  P   VW  LLGA  +H NVELGE+AA+ L  L+PE+   YVLL
Sbjct: 645 AGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLL 704

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           S +Y+A   W++  NVR +MD++ ++K P +S IEV+N
Sbjct: 705 SNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKN 742



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 164/545 (30%), Positives = 275/545 (50%), Gaps = 21/545 (3%)

Query: 66  LFDEMSERSSFL--YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
           LFD++  R + L  +N ++  Y+++  + ++L +F+ +L      PD  T   V   C  
Sbjct: 47  LFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLH-SSLQPDESTLSCVFNICAG 105

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
               KLG  +H + +  G      VG  L+ MYM    V   R+VFD M E +VVSW +L
Sbjct: 106 SLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSL 165

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243
           ++GY  N        +F  M   GV P+  +V +V+ A      + +G  +H +V     
Sbjct: 166 LAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGF 225

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
            + I  +N+L+ +Y + G + +AR VFD+M  RD VTW SMI GY  NG       +F  
Sbjct: 226 EEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNK 285

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           MQ  GV+P  +T  S++ +C+SL  L   + +    +K     + IV TAL+   +KC  
Sbjct: 286 MQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKE 345

Query: 364 VKLSFQVFARTSK-KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
           +  +  +F+   + K  V W A+++GC+ NG   +AV LF QM  E V+PN  T +++L 
Sbjct: 346 MDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT 405

Query: 423 A-YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
             Y +         +H  +I+  +     V T L+D Y K G+   A K+F EI I+ KD
Sbjct: 406 VHYPVFVS-----EMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVF-EI-IEAKD 458

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC-SHGGLLDEGLDLF 540
           ++ WS ++AGY   G  E A  LF ++++ G++PNE TF+S ++AC S     ++G    
Sbjct: 459 LMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFH 518

Query: 541 NFMLE---NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
            + ++   N+  C      + +V +  + G +D A+++ +    +     W +++     
Sbjct: 519 AYAIKMRLNNALCVS----SALVTMYAKRGNIDSAHEVFKRQKERDL-VSWNSMISGYSQ 573

Query: 598 HGNVE 602
           HG  +
Sbjct: 574 HGQAK 578


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/586 (36%), Positives = 317/586 (54%), Gaps = 24/586 (4%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           YN ++  Y  N     S   +L M        DN+  P ++KAC   +   LG  LHG  
Sbjct: 55  YNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGFA 114

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
              GF  D FV N L+ MY   G + +AR VFD M E  VVSW T++  Y ++    EAL
Sbjct: 115 QKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEAL 174

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG--GRLGKNIAAWNALVD 255
            +   M   GV+    +++S++   G L +++ GR +H  +    G     ++   AL+D
Sbjct: 175 RLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALID 234

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           MY K G +  A+ +FDR+S+R VV+WT MI G   +  +      F  M  E + PN +T
Sbjct: 235 MYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEIT 294

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
           + SL++ C  +  L  G+  HA+ ++      + + TALIDMY KC  V  +  +F    
Sbjct: 295 LLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVK 354

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
           KK    W+ +++   H     +   LF +ML   V+PN+ T+ SLL   A    L     
Sbjct: 355 KKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKW 414

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
            H Y+ R+G    V + T LI++Y+KCG +  A  +F+E     +DI +W+ ++AG+ MH
Sbjct: 415 THAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEA--MQRDIRMWNTMMAGFSMH 472

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
           G G+ A+ LF EM   GV+PN++TF S  HACSH GL++                    H
Sbjct: 473 GCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGLME--------------------H 512

Query: 556 YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
           Y C+VDLLGRAG LDEA+++I  MP++P   +WGALL AC +H N+ LGEVAA+ + EL+
Sbjct: 513 YGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELD 572

Query: 616 PENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           P+N G  VL S +Y++ +RW D  +VR+ M   G++K P  S IEV
Sbjct: 573 PQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEV 618



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 138/485 (28%), Positives = 247/485 (50%), Gaps = 30/485 (6%)

Query: 33  KQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           ++LH F   +G        +   ++    G + + R++FD+M ER    + T++  Y ++
Sbjct: 108 RELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRS 167

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD--MDT 146
            A  ++L++   M  +G           +I    +L   K G A+HG ++    D  M+ 
Sbjct: 168 KAFGEALRLVREMQFVG-VKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEV 226

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
            +   LI MY   G + +A+++FD + + SVVSW  +I+G  ++    E    F+ ML+ 
Sbjct: 227 SMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEE 286

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
            + P+  +++S++  CG++  +++G+  H  +     G ++A   AL+DMY KCG V  A
Sbjct: 287 KLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYA 346

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
           R +F+ + ++DV  W+ +I+ YA    +     LF  M    V+PN++T+ SLLS C+  
Sbjct: 347 RALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEA 406

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             L  G+  HA+  +  LE +VI+ETALI+MYAKC  V ++  +F    ++    WN ++
Sbjct: 407 GALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMM 466

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           AG   +G  ++A+ELF +M    VEPND T  S+  A +    ++           YG  
Sbjct: 467 AGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGLMEH----------YGC- 515

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH---GETAVS 503
                   L+D+  + G L+ AH I   +P++  + ++W  ++A   +H +   GE A  
Sbjct: 516 --------LVDLLGRAGHLDEAHNIIENMPMR-PNTIIWGALLAACKLHKNLALGEVAAR 566

Query: 504 LFKEM 508
              E+
Sbjct: 567 KILEL 571


>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 702

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/635 (34%), Positives = 345/635 (54%), Gaps = 64/635 (10%)

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
           +T   M+    A H  L +        +   D+ TY  ++++C  L    LG  +H   L
Sbjct: 37  STPQSMHLSTAAHHTHLSLL-------DKQIDSSTYASLLESCRTL---NLGKQVHAHTL 86

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
            TGF    FV   L+ MY  FG +  A  VF  M + ++ SW  ++S +  + Y +EAL 
Sbjct: 87  KTGFHGHEFVETKLLQMYGRFGCLDDANLVFVKMPQRNLYSWTAILSVHVDHGYFEEALS 146

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA-------------GGRLGK 245
           +F+ +    +  +      VL  CG L+ +E+GR +H +V               G   K
Sbjct: 147 LFEKLQLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVK 206

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMS--ERDVVTWTSMINGYALNGDVRNALGLFQ- 302
           N+ ++N ++  Y + G+V +A+ +FD+M    +D ++W SMI+GYA N     AL +F+ 
Sbjct: 207 NVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRD 266

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
           L+  EG+  +S T+GS+L+AC+ +  L+RG+ +HA  + + L     V  AL++MY+KC 
Sbjct: 267 LLMEEGIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCE 326

Query: 363 LVKLSFQVFARTSKKKTVPWN-----------------------------------AILA 387
            +K +   F   +++ T  WN                                    I++
Sbjct: 327 DLKAAQLAFDGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIIS 386

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G V NG    A+ LF +M    + P+  T+  +LPA A LA + +   +H + IR G+  
Sbjct: 387 GHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYEL 446

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            V +   L+D+Y+KCGS++ A ++++ I   + ++V  + ++  Y MHGHG+  ++LF+ 
Sbjct: 447 DVHIGAALVDMYAKCGSIKHAMQVYNRI--SNPNLVSQNAMLTAYAMHGHGDEGIALFRN 504

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M+ +G +P+ VTF S L +C H G ++ G + F+ M   + T S   HYTCIVDLL RAG
Sbjct: 505 MLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPS-LKHYTCIVDLLSRAG 563

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
           RLDEAY+L++ +P KP   +WGALLG CVI GNVELGE+AA+ L ELEP N GNYVLL+ 
Sbjct: 564 RLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLAN 623

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           LY+   RW D +  R ++ ++G+ K+P  S IE R
Sbjct: 624 LYAYAGRWHDLDRTRQMIKDRGMHKSPGCSWIEDR 658



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 199/413 (48%), Gaps = 50/413 (12%)

Query: 58  GHVSNVRILFDEMS--ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
           G+V   + LFD+M    + +  +N+++  YA N    ++L MF  +L       D++T  
Sbjct: 222 GNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEEGIEADSFTLG 281

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
            V+ AC D+A  + G  +H + ++ G   +TFVG  L+ MY    ++KAA+  FD + E 
Sbjct: 282 SVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAFDGVTER 341

Query: 176 SVVSWNTLISGY-----------------------------------FKNAYAKEALVVF 200
              +WN LISGY                                    +N + + AL +F
Sbjct: 342 DTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLF 401

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI--HELVAGGRLGKNIAAWNALVDMYV 258
             M  S + PD  +V  +LPAC  L  I  G+ +  H +  G  L  +I A  ALVDMY 
Sbjct: 402 TEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGA--ALVDMYA 459

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           KCGS+  A  V++R+S  ++V+  +M+  YA++G     + LF+ M   G RP+ +T  S
Sbjct: 460 KCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLS 519

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK- 377
           +LS+C     ++ G          N+   +   T ++D+ ++   +  ++++  +  +K 
Sbjct: 520 VLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKP 579

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
            +V W A+L GCV  G      E+  + L+E +EPN+         Y +LA+L
Sbjct: 580 DSVMWGALLGGCVIWGNVELG-EIAAESLIE-LEPNNTG------NYVLLANL 624


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/574 (36%), Positives = 323/574 (56%), Gaps = 19/574 (3%)

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           P+NYT+P  +KAC+ LA    G A+H   +  G   D FV   L+ MY+    +  A  +
Sbjct: 8   PNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEAL--VVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           F  M    +V+WN +++GY  +     A+  ++   M    + P+ +++V++LP      
Sbjct: 68  FATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG 127

Query: 227 EIEMGRMIHELV----------AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER 276
            +  G  +H             +  +L   +    AL+DMY KCGS+  AR VFD M  R
Sbjct: 128 ALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR 187

Query: 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGV---RPNSLTIGSLLSACSSLYYLKRGR 333
           + VTW+++I G+ L   +  A  LF+ M  +G+    P S  I S L AC+SL +L+ G 
Sbjct: 188 NEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRACASLDHLRMGE 245

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            LHA   K  +  ++    +L+ MYAK  L+  +  +F   + K TV ++A+++G V NG
Sbjct: 246 QLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNG 305

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
            A +A  +F++M    VEP+ AT+ SL+PA + LA LQ     H  +I  G  S   +  
Sbjct: 306 RAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICN 365

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            LID+Y+KCG ++ + ++F+ +P   +DIV W+ +IAGYG+HG G+ A +LF EM   G 
Sbjct: 366 ALIDMYAKCGRIDLSRQVFNMMP--SRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGF 423

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
            P+ VTF   L ACSH GL+ EG   F+ M   +    R +HY C+VDLL R G LDEAY
Sbjct: 424 PPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAY 483

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633
           + I++MPL+    VW ALLGAC ++ N++LG+  ++ + EL PE  GN+VLLS +YSA  
Sbjct: 484 EFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAG 543

Query: 634 RWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           R+ +A  VR +   +G +K+P  S IE+   L A
Sbjct: 544 RFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHA 577



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 126/425 (29%), Positives = 204/425 (48%), Gaps = 20/425 (4%)

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           ML+  V P+  +    L AC  L +   GR IH       L  ++    AL+DMYVKC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG--LFQLMQFEGVRPNSLTIGSLL 320
           + +A  +F  M  RD+V W +M+ GYA +G   +A+   L   MQ   +RPN+ T+ +LL
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 321 SACSSLYYLKRGRSLHAWTI----------KQNLECEVIVETALIDMYAKCNLVKLSFQV 370
              +    L +G S+HA+ I          K  L   V++ TAL+DMYAKC  +  + +V
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE-VVEPNDATLNSLLPAYAILAD 429
           F     +  V W+A++ G V      +A  LF+ ML + +   +  ++ S L A A L  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L+    +H  L + G  + +     L+ +Y+K G ++ A  +F E+ +KD   V +S ++
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT--VSYSALV 298

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           +GY  +G  E A  +FK+M    V+P+  T  S + ACSH   L  G      ++     
Sbjct: 299 SGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GL 357

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
            S       ++D+  + GR+D +  +   MP +     W  ++    IHG   LG+ A  
Sbjct: 358 ASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDI-VSWNTMIAGYGIHG---LGKEATA 413

Query: 610 WLFEL 614
              E+
Sbjct: 414 LFLEM 418



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 130/262 (49%), Gaps = 9/262 (3%)

Query: 33  KQLHAFIITSGPLFTHLRS--SLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           +QLHA +  SG +   L +  SL+  Y   G +     LFDEM+ + +  Y+ ++  Y Q
Sbjct: 245 EQLHALLAKSG-VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQ 303

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NG + ++  +F  M +     PD  T   +I AC+ LA  + G   HG V+I G   +T 
Sbjct: 304 NGRAEEAFLVFKKM-QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS 362

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           + N LI MY   G +  +R+VF+ M    +VSWNT+I+GY  +   KEA  +F  M   G
Sbjct: 363 ICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLG 422

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRM-IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
             PD  + + +L AC +   +  G+   H +  G  L   +  +  +VD+  + G ++EA
Sbjct: 423 FPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEA 482

Query: 267 RLVFDRMSER-DVVTWTSMING 287
                 M  R DV  W +++  
Sbjct: 483 YEFIQSMPLRADVRVWVALLGA 504


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 222/647 (34%), Positives = 355/647 (54%), Gaps = 12/647 (1%)

Query: 24  AATKSIAGTKQLHAFIITS---GPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFL 77
           A+   +   KQ+H + +     G  F  L S L+  Y   G   +   LF E+ ++ + +
Sbjct: 165 ASDGHLGYAKQIHGYSVRKVFYGDPF--LESGLIYMYFSCGRPLDAWRLFKELEDKGNVV 222

Query: 78  -YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGR 136
            +N ++  + +NG   +SL+++L + +       + ++   + AC    +   G+ +H  
Sbjct: 223 AWNVMIGGFGENGLWENSLEVYL-LAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCD 281

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEA 196
           ++  GF+ D +V   L+ MY     V+ A  VFD +       WN +IS Y  N  + + 
Sbjct: 282 LVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDG 341

Query: 197 LVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
           L ++  M    + PD  +  +VL +C  +   + GR+IH  +    +  N+A  +AL+ M
Sbjct: 342 LKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVKRPIQSNVALQSALLTM 401

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y KCG+ ++A  +F+ +  RDVV W SMI+G+  N     AL  +  M   G +P+S  +
Sbjct: 402 YSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIM 461

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
            S++SAC+ L  +  G ++H   IK  LE +V V ++L+DMY+K N  K+S  VF+    
Sbjct: 462 ASVVSACTGLKNVNLGCTIHGLAIKSGLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMPL 521

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           K  V WN+I++    NGL   ++ LF QM    + P+  ++ S+L + + +A L++   +
Sbjct: 522 KNLVAWNSIISCYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKGKAV 581

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H YLIR    S +++   LID+Y KCG L+ A  IF    +   ++V W+++IAG G HG
Sbjct: 582 HGYLIRQRIPSDLQLENALIDMYIKCGFLKYAQHIFQN--MLQTNLVTWNIMIAGCGSHG 639

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
               A+SLF EM   G+ P+++TF S L +C+H G ++EGL LF  M   H    R +HY
Sbjct: 640 DWLKAMSLFDEMRSFGIAPDDITFISLLTSCNHCGFIEEGLKLFQLMTVEHGIEPRMEHY 699

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
             IVDLLGRAGRLD+AY  ++ +P++P  ++W +LL +C +H NVELG++AA  L ++EP
Sbjct: 700 VNIVDLLGRAGRLDDAYAFVKNLPIEPDRSIWLSLLCSCRVHHNVELGKLAAHKLLDIEP 759

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
               NYV L  LY        A N+R  M EKGL+K P  S IEV N
Sbjct: 760 SRGSNYVQLLNLYGENELQDRAANLRASMKEKGLKKTPGCSWIEVGN 806



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 135/453 (29%), Positives = 227/453 (50%), Gaps = 23/453 (5%)

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDM-D 145
           Q G   D+L+ +         N   +TYP ++KAC  L+  + G  +H  ++  GF   D
Sbjct: 29  QQGQYVDALQFY----SRNPLNATRFTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSD 84

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWE-----HSVVSWNTLISGYFKNAYAKEALVVF 200
            ++   LI  Y   G    A KVFD + E       V  WN++++GYF+  + KE +  F
Sbjct: 85  PYITTSLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQF 144

Query: 201 DWMLKSGVEPDCASVVSVLPAC----GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
             M   GV PD  S+  +L A     GY K+I  G  + ++  G    +     + L+ M
Sbjct: 145 CRMQLFGVRPDAYSLCILLGASDGHLGYAKQIH-GYSVRKVFYGDPFLE-----SGLIYM 198

Query: 257 YVKCGSVNEARLVFDRMSER-DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           Y  CG   +A  +F  + ++ +VV W  MI G+  NG   N+L ++ L + E V+  S +
Sbjct: 199 YFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSAS 258

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
             S LSAC    ++  G  +H   +K   E +  V T+L+ MY+KC LV+ +  VF + S
Sbjct: 259 FTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVS 318

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
            KKT  WNA+++  V NG +   +++++QM V  + P+  T  ++L +  ++        
Sbjct: 319 VKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRL 378

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           IH  L++    S V + + L+ +YSKCG+ + A+ IF+   IK +D+V W  +I+G+  +
Sbjct: 379 IHAELVKRPIQSNVALQSALLTMYSKCGNSDDANSIFNT--IKGRDVVAWGSMISGFCQN 436

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
                A+  +  M   G +P+     S + AC+
Sbjct: 437 RKYMEALEFYNSMTVYGEKPDSDIMASVVSACT 469



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 191/387 (49%), Gaps = 14/387 (3%)

Query: 217 SVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE 275
           S+L ACG+L  ++ G+ IH  ++  G    +     +L++ Y KCGS   A  VFD++ E
Sbjct: 54  SLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKVFDKLPE 113

Query: 276 -----RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
                +DV  W S++NGY   G  +  +  F  MQ  GVRP++ ++  LL A     +L 
Sbjct: 114 SEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILLGASDG--HLG 171

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK-KTVPWNAILAGC 389
             + +H +++++    +  +E+ LI MY  C     ++++F     K   V WN ++ G 
Sbjct: 172 YAKQIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGF 231

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
             NGL   ++E++     E V+   A+  S L A      +   M +HC L++ GF +  
Sbjct: 232 GENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDP 291

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            V T L+ +YSKC  +E A  +F ++ +K  ++  W+ +I+ Y  +G     + ++K+M 
Sbjct: 292 YVCTSLLTMYSKCKLVEDAENVFDQVSVKKTEL--WNAMISAYVGNGRSYDGLKIYKQMK 349

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
              + P+ +T T+ L +C   G  D G  L +  L      S     + ++ +  + G  
Sbjct: 350 VLQIPPDSLTATNVLSSCCLVGSYDFG-RLIHAELVKRPIQSNVALQSALLTMYSKCGNS 408

Query: 570 DEAYDLIRTMPLKPTHAVWGALL-GAC 595
           D+A  +  T+  +   A WG+++ G C
Sbjct: 409 DDANSIFNTIKGRDVVA-WGSMISGFC 434


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 221/632 (34%), Positives = 353/632 (55%), Gaps = 8/632 (1%)

Query: 34  QLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           Q+H+++I SG     ++ +SLV  Y   G +   R++FD +  ++   +  ++  Y ++G
Sbjct: 163 QVHSYVIKSGFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSG 222

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
            S  SL++F  M+      PD Y    ++ AC+ L + K G  +H  VL +   MD    
Sbjct: 223 RSEVSLQLFNLMME-SNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTY 281

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N LI  Y   G VKA + +FD +   +++SW T+I+GY +N+Y  EA+ +   M + G +
Sbjct: 282 NVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWK 341

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PD  +  SVL +CG +  ++ GR IH  V    L  +    NAL+DMY KC ++++A+ V
Sbjct: 342 PDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRV 401

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           FD ++   VV + +MI GY+  G +  AL +FQ M+ + V P+ LT  SLL   ++L  L
Sbjct: 402 FDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCL 461

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           +  + +H   IK     +    +ALID+Y+KC+ ++ +  VF  T+ K  V WN++ +G 
Sbjct: 462 QLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGY 521

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
                + +A +L+  + +    PN+ T  +L  A +ILA L      H  +++ G  S  
Sbjct: 522 NLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDP 581

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            ++  L+D+Y+KCGS+E A KIFS    KD     W+ +I+ Y  HG  E A+ +F+ MV
Sbjct: 582 FITNALVDMYAKCGSVEEAEKIFSSSVWKDT--ACWNSMISMYAQHGKVEEALRMFETMV 639

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
            + + PN VTF S L ACSH G +++GL  +N M   +      +HY  +V LLGRAGRL
Sbjct: 640 SNNINPNYVTFVSVLSACSHVGFVEDGLQHYNSM-ARYGIEPGIEHYASVVTLLGRAGRL 698

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629
            EA + I  M ++P   VW +LL AC + GNVEL + AA+    ++P + G+YV+LS ++
Sbjct: 699 TEAREFIEKMTIRPAALVWRSLLSACRVFGNVELAKHAAEMAISIDPMDSGSYVMLSNIF 758

Query: 630 SAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           ++   W D + +R  MD  G+ K P  S IEV
Sbjct: 759 ASKGMWGDVKRLRLKMDVNGVVKEPGQSWIEV 790



 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 196/617 (31%), Positives = 317/617 (51%), Gaps = 22/617 (3%)

Query: 25  ATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNT 80
           + KSI   +++H  ++  G  +   L + L+ +Y   G V +   LFD+M  R+   +++
Sbjct: 52  SNKSILYYRKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSS 111

Query: 81  VMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT 140
           V+ MY Q G +  +L  FL   R      + Y    +I+AC      + G  +H  V+ +
Sbjct: 112 VVSMYTQLGYNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKS 171

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           GF  D +VG  L+ +Y   GE+  AR VFD +   + V+W  +I+GY K+  ++ +L +F
Sbjct: 172 GFGEDVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLF 231

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           + M++S V PD   + S+L AC  L  ++ G+ IH  V       +++ +N L+D Y KC
Sbjct: 232 NLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKC 291

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           G V   + +FDR+  +++++WT+MI GY  N     A+ L   M   G +P+     S+L
Sbjct: 292 GRVKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVL 351

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           ++C S+  L+ GR +H++ IK  LE +  V  ALIDMY+KCN +  + +VF   +    V
Sbjct: 352 TSCGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVV 411

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            +NA++ G    G    A+E+F++M ++ V P+  T  SLL   A L  LQ +  IH  +
Sbjct: 412 YYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLI 471

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           I+YGF      S+ LID+YSKC  +  A  +F      +KDIVVW+ + +GY +    E 
Sbjct: 472 IKYGFSLDKFTSSALIDVYSKCSCIRDARYVFE--GTTNKDIVVWNSLFSGYNLQLKSEE 529

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM----LENHQTCSRADHY 556
           A  L+ ++  S  +PNE TF +   A S    L  G    N +    LE+    + A   
Sbjct: 530 AFKLYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFITNA--- 586

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
             +VD+  + G ++EA  +  +   K T A W +++     HG VE     A  +FE   
Sbjct: 587 --LVDMYAKCGSVEEAEKIFSSSVWKDT-ACWNSMISMYAQHGKVE----EALRMFETMV 639

Query: 617 EN--PGNYVLLSKLYSA 631
            N    NYV    + SA
Sbjct: 640 SNNINPNYVTFVSVLSA 656



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 134/477 (28%), Positives = 237/477 (49%), Gaps = 6/477 (1%)

Query: 29  IAGTKQLHAFIITS-GPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKM 84
           + G KQ+HA+++ S   +     + L+  Y   G V   + LFD +  ++   + T++  
Sbjct: 259 LKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNIISWTTMIAG 318

Query: 85  YAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDM 144
           Y QN    +++++   M R+G + PD Y    V+ +C  +   + G  +H  V+    + 
Sbjct: 319 YMQNSYDWEAVELVGEMFRMG-WKPDEYACSSVLTSCGSVDALQHGRQIHSYVIKVCLEH 377

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           D FV N LI MY     +  A++VFD +  HSVV +N +I GY +  Y   AL VF  M 
Sbjct: 378 DNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGALEVFQEMR 437

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
              V P   + VS+L     L  +++ + IH L+       +    +AL+D+Y KC  + 
Sbjct: 438 LKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKYGFSLDKFTSSALIDVYSKCSCIR 497

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
           +AR VF+  + +D+V W S+ +GY L      A  L+  +Q    RPN  T  +L +A S
Sbjct: 498 DARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEFTFAALTTAAS 557

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
            L  L  G+  H   +K  LE +  +  AL+DMYAKC  V+ + ++F+ +  K T  WN+
Sbjct: 558 ILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSVEEAEKIFSSSVWKDTACWNS 617

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           +++    +G   +A+ +F  M+   + PN  T  S+L A + +  ++  +  +  + RYG
Sbjct: 618 MISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSACSHVGFVEDGLQHYNSMARYG 677

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
               +E    ++ +  + G L  A +   ++ I+   + VW  +++   + G+ E A
Sbjct: 678 IEPGIEHYASVVTLLGRAGRLTEAREFIEKMTIRPAAL-VWRSLLSACRVFGNVELA 733


>gi|449442767|ref|XP_004139152.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Cucumis sativus]
          Length = 743

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/631 (33%), Positives = 346/631 (54%), Gaps = 10/631 (1%)

Query: 35  LHAFIITSGPLF-THLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGA 90
           LH  ++ +G    +++ SSL+  Y     +   R +FD M +R+   + T++  Y++ G 
Sbjct: 71  LHQSVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGD 130

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
              +  MF  M   G   P + T   ++   + L            +++ GF+ D  + N
Sbjct: 131 IDIAFSMFKQMRESG-IQPTSVTLLSLLPGISKLPLLLCLHC---LIILHGFESDLALSN 186

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            ++ MY   G +  AR++F ++    +VSWN+L+S Y K    +E L +   M    ++P
Sbjct: 187 SMVNMYGKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKP 246

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D  +  S L A     ++ +G+++H L+    L  +    +ALV +Y++C  ++ A  VF
Sbjct: 247 DKQTFCSALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVF 306

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
              +E+DVV WT+MI+G   N     ALG+F  M    V+P++ T+ S L+AC+ L    
Sbjct: 307 KSTTEKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCD 366

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
            G S+H + ++Q +  ++  + +L+ MYAKCN ++ S  +F +  +K  V WNAI+AG  
Sbjct: 367 IGASIHGYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMVEKDLVSWNAIVAGHA 426

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
            NG   K +  F +M    + P+  T+ SLL A      L Q   IH +++R   +  + 
Sbjct: 427 KNGYLSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSLIPCIM 486

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
             T L+D+Y KCG+LE+A K F    +  +D+V WS +I GYG +G GE A+  + E + 
Sbjct: 487 TETALVDMYFKCGNLENAQKCFD--CMLQRDLVAWSTLIVGYGFNGKGEIALRKYSEFLG 544

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
           +G++PN V F S L ACSHGGL+ +GL ++  M ++ +     +H  C+VDLL RAG++D
Sbjct: 545 TGMEPNHVIFISVLSACSHGGLISKGLSIYESMTKDFRMSPNLEHRACVVDLLSRAGKVD 604

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630
           EAY   + M  +P+  V G LL AC ++G VELG+V A+ +FEL+P +PGN+V L+  Y+
Sbjct: 605 EAYSFYKMMFKEPSIVVLGMLLDACRVNGRVELGKVIARDMFELKPVDPGNFVQLANSYA 664

Query: 631 AVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           ++ RW   E     M   GL+K P  S IEV
Sbjct: 665 SMSRWDGVEKAWTQMRSLGLKKYPGWSSIEV 695



 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 176/560 (31%), Positives = 303/560 (54%), Gaps = 22/560 (3%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N+++   +  GA H  L+ ++ M +      D YT+P + KACT+L     G++LH  V
Sbjct: 17  FNSLVSRLSYQGAHHQVLQTYISMQKT-HTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           ++ G   D+++G+ LI+ Y  FG +   RKVFD M + +VV W T+I  Y +      A 
Sbjct: 76  VVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAF 135

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
            +F  M +SG++P   +++S+LP    + ++ +   +H L+       ++A  N++V+MY
Sbjct: 136 SMFKQMRESGIQPTSVTLLSLLPG---ISKLPLLLCLHCLIILHGFESDLALSNSMVNMY 192

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
            KCG + +AR +F  +  RD+V+W S+++ Y+  G     L L Q M+ E ++P+  T  
Sbjct: 193 GKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFC 252

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           S LSA +    L+ G+ +H   +K  L  +  VE+AL+ +Y +C  +  +++VF  T++K
Sbjct: 253 SALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTTEK 312

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V W A+++G V N  A KA+ +F QM+   V+P+ ATL S L A A L       +IH
Sbjct: 313 DVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGASIH 372

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            Y++R G +  +     L+ +Y+KC  L+ +  IF+++   +KD+V W+ I+AG+  +G+
Sbjct: 373 GYVLRQGIMLDIPAQNSLVTMYAKCNKLQQSCSIFNKMV--EKDLVSWNAIVAGHAKNGY 430

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT-CSRADHY 556
               +  F EM +S ++P+ +T TS L AC   G L +G  + NF+L +    C   +  
Sbjct: 431 LSKGIFFFNEMRKSFLRPDSITVTSLLQACGSAGALCQGKWIHNFVLRSSLIPCIMTE-- 488

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE--- 613
           T +VD+  + G L+ A      M L+     W  L+   V +G    GE+A +   E   
Sbjct: 489 TALVDMYFKCGNLENAQKCFDCM-LQRDLVAWSTLI---VGYGFNGKGEIALRKYSEFLG 544

Query: 614 --LEPENPGNYVLLSKLYSA 631
             +EP    N+V+   + SA
Sbjct: 545 TGMEP----NHVIFISVLSA 560



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 187/368 (50%), Gaps = 5/368 (1%)

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           S+N+L+S         + L  +  M K+  + D  +  S+  AC  L     G  +H+ V
Sbjct: 16  SFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQSV 75

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               L  +    ++L+  Y K G ++  R VFD M +R+VV WT++I  Y+  GD+  A 
Sbjct: 76  VVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTMLKRNVVPWTTIIGSYSREGDIDIAF 135

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
            +F+ M+  G++P S+T+ SLL   S    L     LH   I    E ++ +  ++++MY
Sbjct: 136 SMFKQMRESGIQPTSVTLLSLLPGISK---LPLLLCLHCLIILHGFESDLALSNSMVNMY 192

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
            KC  +  + ++F     +  V WN++L+     G   + ++L + M +E ++P+  T  
Sbjct: 193 GKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTFC 252

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           S L A AI  DL+    +H  +++ G      V + L+ +Y +C  L+ A+K+F      
Sbjct: 253 SALSASAIKGDLRLGKLVHGLMLKDGLNIDQHVESALVVLYLRCRCLDPAYKVFKSTT-- 310

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
           +KD+V+W+ +I+G   +   + A+ +F +M++S V+P+  T  S L AC+  G  D G  
Sbjct: 311 EKDVVMWTAMISGLVQNDCADKALGVFYQMIESNVKPSTATLASGLAACAQLGCCDIGAS 370

Query: 539 LFNFMLEN 546
           +  ++L  
Sbjct: 371 IHGYVLRQ 378



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 107/258 (41%), Gaps = 32/258 (12%)

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
           T  +N++++   + G   + ++ +  M     + +  T  SL  A   L      +++H 
Sbjct: 14  TKSFNSLVSRLSYQGAHHQVLQTYISMQKTHTQLDAYTFPSLFKACTNLNLFSHGLSLHQ 73

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
            ++  G      + + LI  Y+K G +    K+F  +    +++V W+ II  Y   G  
Sbjct: 74  SVVVNGLSHDSYIGSSLISFYAKFGCIHLGRKVFDTML--KRNVVPWTTIIGSYSREGDI 131

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSH------------GGLLDEGLDLFNFMLEN 546
           + A S+FK+M +SG+QP  VT  S L   S                 +  L L N M+  
Sbjct: 132 DIAFSMFKQMRESGIQPTSVTLLSLLPGISKLPLLLCLHCLIILHGFESDLALSNSMVNM 191

Query: 547 HQTCSR-AD--------------HYTCIVDLLGRAGRLDEAYDLIRTMP---LKPTHAVW 588
           +  C R AD               +  ++    + G  +E   L++ M    +KP    +
Sbjct: 192 YGKCGRIADARRLFQSIDCRDIVSWNSLLSAYSKIGATEEILQLLQAMKIEDIKPDKQTF 251

Query: 589 GALLGACVIHGNVELGEV 606
            + L A  I G++ LG++
Sbjct: 252 CSALSASAIKGDLRLGKL 269


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 225/671 (33%), Positives = 346/671 (51%), Gaps = 81/671 (12%)

Query: 34  QLHAFIITSG-PLFTHLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           ++H  +I  G  L  +LR +L+  YG    +     +F EM    + L+N  + +  Q+ 
Sbjct: 154 EIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSE 213

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
                +++F  M +      +  T   V++AC  +        +HG V   G D D  + 
Sbjct: 214 KLQKGVELFRKM-QFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLC 272

Query: 150 NCLIAMYMNFGEVKAARKVFDAM------------------------W-----------E 174
           N LI+MY   G+++ AR+VFD+M                        W           +
Sbjct: 273 NPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMK 332

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
             +V+WN L+SG+F + Y +E L +   M   G +P+ +S+ SVL A   L  + MG+  
Sbjct: 333 PDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKET 392

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H  V       ++    +L+DMYVK  S+  A+ VFD M  R++  W S+++GY+  G  
Sbjct: 393 HGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMF 452

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
            +AL L   M+ EG++P+ +T   ++S                                 
Sbjct: 453 EDALRLLNQMEKEGIKPDLVTWNGMISG-------------------------------- 480

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVP----WNAILAGCVHNGLARKAVELFRQMLVEVV 410
              YA     K +  V  +T      P    W A+++G    G  R +++ F QM  E V
Sbjct: 481 ---YAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGV 537

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
            PN A++  LL A A L+ LQ+   IHC  IR GF+  V V+T LID+YSK  SL++AHK
Sbjct: 538 MPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHK 597

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           +F  I  ++K +  W+ +I G+ + G G+ A+S+F EM + GV P+ +TFT+ L AC + 
Sbjct: 598 VFRRI--QNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNS 655

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           GL+ EG   F+ M+ +++   R +HY C+VDLLGRAG LDEA+DLI TMPLKP   +WGA
Sbjct: 656 GLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGA 715

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LLG+C IH N++  E AAK LF+LEP N  NY+L+  LYS   RW+D +++R++M   G+
Sbjct: 716 LLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGV 775

Query: 651 RKAPAHSLIEV 661
           R     S I++
Sbjct: 776 RNRQVWSWIQI 786



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 144/551 (26%), Positives = 255/551 (46%), Gaps = 81/551 (14%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVR 64
           L   T  +++++Q      ++   KQ+H ++   G      L + L+  Y   G +   R
Sbjct: 230 LKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELAR 289

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMF-------------------------- 98
            +FD M  R++  +N+++  YA  G  +D+  +F                          
Sbjct: 290 RVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHG 349

Query: 99  -----LGMLR--LGE-YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
                L +L+   GE + P++ +   V++A ++L +  +G   HG VL  GFD D +VG 
Sbjct: 350 YKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGT 409

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            LI MY+    + +A+ VFD M   ++ +WN+L+SGY      ++AL + + M K G++P
Sbjct: 410 SLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKP 469

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D                                   +  WN ++  Y   G   EA  V 
Sbjct: 470 D-----------------------------------LVTWNGMISGYAMWGCGKEALAVL 494

Query: 271 DRMSE----RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
            +        +VV+WT++I+G +  G+ R++L  F  MQ EGV PNS +I  LL AC+SL
Sbjct: 495 HQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASL 554

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             L++G+ +H  +I+     +V V TALIDMY+K + +K + +VF R   K    WN ++
Sbjct: 555 SLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMI 614

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGF 445
            G    GL ++A+ +F +M    V P+  T  +LL A      + +       +I  Y  
Sbjct: 615 MGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRI 674

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
           +  +E    ++D+  + G L+ A  +   +P+K  D  +W  ++    +H + + A +  
Sbjct: 675 VPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLK-PDATIWGALLGSCRIHKNLKFAETAA 733

Query: 506 KEMVQSGVQPN 516
           K + +  ++PN
Sbjct: 734 KNLFK--LEPN 742



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 180/406 (44%), Gaps = 43/406 (10%)

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN-GDVRNALGLFQLMQF 306
           AA   L+  Y+  G    A +VF     R+ + W S +  +  + G +   L +F+ +  
Sbjct: 67  AAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHG 126

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
           +GV  +S      L  C+ +  +  G  +H   IK+  + +V +  AL++ Y +C  ++ 
Sbjct: 127 KGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEK 186

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           + QVF      + + WN  +   + +   +K VELFR+M    ++   AT+  +L A   
Sbjct: 187 ANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGK 246

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD------- 479
           +  L  A  IH Y+ R+G  S V +   LI +YSK G LE A ++F  +  ++       
Sbjct: 247 MGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSM 306

Query: 480 --------------------------KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
                                      DIV W+ +++G+ +HG+ E  +++ + M   G 
Sbjct: 307 ISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGF 366

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDE 571
           +PN  + TS L A S  G L+ G +   ++L N   C   D Y  T ++D+  +   L  
Sbjct: 367 KPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDC---DVYVGTSLIDMYVKNHSLTS 423

Query: 572 AYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617
           A  +   M  +   A W +L+      G   + E A + L ++E E
Sbjct: 424 AQAVFDNMKNRNIFA-WNSLVSGYSFKG---MFEDALRLLNQMEKE 465


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 225/642 (35%), Positives = 349/642 (54%), Gaps = 21/642 (3%)

Query: 33  KQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           + +HA+I+ SG     +  +L   +  + G V++  +LF+ M ER    +N  +   AQ+
Sbjct: 148 RSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQS 206

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G    +L++F  M +L    P   T  I +  C  +   +   A+H  V  +G +    V
Sbjct: 207 GDLDMALELFQRM-QLEGVRPARITLVITLSVCAKI---RQARAIHSIVRESGLEQTLVV 262

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
              L + Y   G +  A++VFD   E  VVSWN ++  Y ++ +  EA ++F  ML  G+
Sbjct: 263 STALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGI 322

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P   ++V+    C  L+    GRMIH       L ++I   NAL+DMY +CGS  EAR 
Sbjct: 323 PPSKVTLVNASTGCSSLR---FGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARH 379

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS--- 325
           +F+ +   + V+W +MI G +  G ++ AL LFQ MQ EG+ P   T  +LL A +S   
Sbjct: 380 LFEGIPG-NAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPE 438

Query: 326 -LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK---LSFQVFARTSKKKTVP 381
               +  GR LH+  +      E  + TA++ MYA C  +     SFQ  A   +   V 
Sbjct: 439 EARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVS 498

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           WNAI++    +G  ++A+  FR+M +  V PN  T  ++L A A  A L + + +H +L 
Sbjct: 499 WNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLR 558

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
             G  S V V+T L  +Y +CGSLESA +IF ++ + ++D+V+++ +IA Y  +G    A
Sbjct: 559 HSGMESNVFVATALASMYGRCGSLESAREIFEKVAV-ERDVVIFNAMIAAYSQNGLAGEA 617

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561
           + LF  M Q G +P+E +F S L ACSHGGL DEG ++F  M +++      DHY C VD
Sbjct: 618 LKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVD 677

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGN 621
           +LGRAG L +A +LIR M +KPT  VW  LLGAC  + +V+ G +A   + EL+P +   
Sbjct: 678 VLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESA 737

Query: 622 YVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           YV+LS + +   +W +A  VR  M+ +GLRK    S IE+++
Sbjct: 738 YVVLSNILAGAGKWDEAAEVRTEMESRGLRKQAGKSWIEIKS 779



 Score =  265 bits (677), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 178/628 (28%), Positives = 322/628 (51%), Gaps = 25/628 (3%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVRILF 67
           +  HLV +L++     + ++  +++HA I++ G L   L + L+R Y     + +V  +F
Sbjct: 28  RPAHLV-RLLRAAGDDRLLSQGRRIHARIVSLG-LEEELGNHLLRLYLKCESLGDVEEVF 85

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
             +  R    + T++  Y ++G +  ++ MF  M + G    D  T+  V+KAC  L   
Sbjct: 86  SRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEG-VRCDAVTFLAVLKACARLGDL 144

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
             G ++H  ++ +G +  + + N L+ +Y + G V +A  +F+ M E  +VSWN  I+  
Sbjct: 145 SQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAAN 203

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            ++     AL +F  M   GV P   ++V  L  C  +++    R IH +V    L + +
Sbjct: 204 AQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQ---ARAIHSIVRESGLEQTL 260

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
               AL   Y + G +++A+ VFDR +ERDVV+W +M+  YA +G +  A  LF  M  E
Sbjct: 261 VVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHE 320

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           G+ P+ +T+ +  + CSSL +   GR +HA  +++ L+ ++++  AL+DMY +C   + +
Sbjct: 321 GIPPSKVTLVNASTGCSSLRF---GRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEA 377

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
             +F        V WN ++AG    G  ++A+ELF++M +E + P  AT  +LL A A  
Sbjct: 378 RHLF-EGIPGNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASN 436

Query: 428 ADLQQAM----NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DI 482
            +  +AM     +H  ++  G+ S   + T ++ +Y+ CG+++ A   F    ++D+ D+
Sbjct: 437 PEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDV 496

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
           V W+ II+    HGHG+ A+  F+ M   GV PN++T  + L AC+    L EG+ + + 
Sbjct: 497 VSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDH 556

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
            L +    S     T +  + GR G L+ A ++   + ++    ++ A++ A   +G   
Sbjct: 557 -LRHSGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNG--- 612

Query: 603 LGEVAAK--WLFELEPENPGNYVLLSKL 628
           L   A K  W  + E   P     +S L
Sbjct: 613 LAGEALKLFWRMQQEGSRPDEQSFVSVL 640


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/574 (36%), Positives = 323/574 (56%), Gaps = 19/574 (3%)

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           P+NYT+P  +KAC+ LA    G A+H   +  G   D FV   L+ MY+    +  A  +
Sbjct: 8   PNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHI 67

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEAL--VVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           F  M    +V+WN +++GY  +     A+  ++   M    + P+ +++V++LP      
Sbjct: 68  FATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQG 127

Query: 227 EIEMGRMIHELV----------AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER 276
            +  G  +H             +  +L   +    AL+DMY KCGS+  AR VFD M  R
Sbjct: 128 ALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR 187

Query: 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGV---RPNSLTIGSLLSACSSLYYLKRGR 333
           + VTW+++I G+ L   +  A  LF+ M  +G+    P S  I S L AC+SL +L+ G 
Sbjct: 188 NEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS--IASALRACASLDHLRMGE 245

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            LHA   K  +  ++    +L+ MYAK  L+  +  +F   + K TV ++A+++G V NG
Sbjct: 246 QLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNG 305

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
            A +A  +F++M    VEP+ AT+ SL+PA + LA LQ     H  +I  G  S   +  
Sbjct: 306 RAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICN 365

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            LID+Y+KCG ++ + ++F+ +P   +DIV W+ +IAGYG+HG G+ A +LF EM   G 
Sbjct: 366 ALIDMYAKCGRIDLSRQVFNMMP--SRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGF 423

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
            P+ VTF   L ACSH GL+ EG   F+ M   +    R +HY C+VDLL R G LDEAY
Sbjct: 424 PPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAY 483

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633
           + I++MPL+    VW ALLGAC ++ N++LG+  ++ + EL PE  GN+VLLS +YSA  
Sbjct: 484 EFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAG 543

Query: 634 RWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           R+ +A  VR +   +G +K+P  S IE+   L A
Sbjct: 544 RFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHA 577



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 126/426 (29%), Positives = 204/426 (47%), Gaps = 20/426 (4%)

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           ML+  V P+  +    L AC  L +   GR IH       L  ++    AL+DMYVKC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG--LFQLMQFEGVRPNSLTIGSLL 320
           + +A  +F  M  RD+V W +M+ GYA +G   +A+   L   MQ   +RPN+ T+ +LL
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 321 SACSSLYYLKRGRSLHAWTI----------KQNLECEVIVETALIDMYAKCNLVKLSFQV 370
              +    L +G S+HA+ I          K  L   V++ TAL+DMYAKC  +  + +V
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE-VVEPNDATLNSLLPAYAILAD 429
           F     +  V W+A++ G V      +A  LF+ ML + +   +  ++ S L A A L  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L+    +H  L + G  + +     L+ +Y+K G ++ A  +F E+ +KD   V +S ++
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT--VSYSALV 298

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           +GY  +G  E A  +FK+M    V+P+  T  S + ACSH   L  G      ++     
Sbjct: 299 SGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GL 357

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
            S       ++D+  + GR+D +  +   MP +     W  ++    IHG   LG+ A  
Sbjct: 358 ASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDI-VSWNTMIAGYGIHG---LGKEATA 413

Query: 610 WLFELE 615
              E+ 
Sbjct: 414 LFLEMN 419



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 130/260 (50%), Gaps = 9/260 (3%)

Query: 33  KQLHAFIITSGPLFTHLRS--SLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           +QLHA +  SG +   L +  SL+  Y   G +     LFDEM+ + +  Y+ ++  Y Q
Sbjct: 245 EQLHALLAKSG-VHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQ 303

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NG + ++  +F  M +     PD  T   +I AC+ LA  + G   HG V+I G   +T 
Sbjct: 304 NGRAEEAFLVFKKM-QACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS 362

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           + N LI MY   G +  +R+VF+ M    +VSWNT+I+GY  +   KEA  +F  M   G
Sbjct: 363 ICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLG 422

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRM-IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
             PD  + + +L AC +   +  G+   H +  G  L   +  +  +VD+  + G ++EA
Sbjct: 423 FPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEA 482

Query: 267 RLVFDRMSER-DVVTWTSMI 285
                 M  R DV  W +++
Sbjct: 483 YEFIQSMPLRADVRVWVALL 502


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/547 (38%), Positives = 311/547 (56%), Gaps = 39/547 (7%)

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           LI   +N G++K A  +FD + E  + +W  LISG+ ++ + K+A+ ++  +L   V PD
Sbjct: 17  LIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPD 76

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFD 271
              ++SV  AC    ++ + + IH+        K++   NAL+DM+ KC  VN AR VFD
Sbjct: 77  KFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFD 136

Query: 272 RMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKR 331
            M  +DVV+WTSM   Y   G  R  + LF+ M   G+R NSLT+ S+L AC+   Y+K 
Sbjct: 137 DMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACAD--YIKL 194

Query: 332 GRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL----- 386
           GR +H + ++  +E  V V +AL++MYA    +K +  VF     +  V WN +L     
Sbjct: 195 GREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFL 254

Query: 387 ------------------------------AGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
                                         +GC+ NG    A+ +  +M    ++PN  T
Sbjct: 255 NKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRIT 314

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           + S LP    L  L+    IH Y+ R+ F+  V ++T L+ +Y+KCG LE +  +F+ +P
Sbjct: 315 IVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMP 374

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
              KD+V W+ +I    MHG G  ++ LF +M+ SGV+PN VTF   L  CSH  L DEG
Sbjct: 375 --RKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEG 432

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
           L +FN M   H     ADHY+C+VD+L RAGRL+EAYD IR MP++PT A WGALLGAC 
Sbjct: 433 LLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACR 492

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           ++ NVELG +AA  LFE+EP+N GNYVLLS +    ++W +A  +R +M +KGL K P  
Sbjct: 493 VYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGR 552

Query: 657 SLIEVRN 663
           S ++V+N
Sbjct: 553 SWVQVKN 559



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/458 (27%), Positives = 214/458 (46%), Gaps = 41/458 (8%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +     LFD++ E     +  ++  + Q+G    ++ ++  +L      PD +    V
Sbjct: 25  GDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSR-NVRPDKFVLLSV 83

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
            KAC       +   +H   +  GF+ D  +GN LI M+     V  AR VFD M    V
Sbjct: 84  AKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDV 143

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSW ++   Y      ++ +++F  M  +G+  +  +V S+LPAC     I++GR +H  
Sbjct: 144 VSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACA--DYIKLGREVHGF 201

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +    +  N+   +ALV+MY     + +ARLVFD M  RD+V+W  M+  Y LN +    
Sbjct: 202 ILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERG 261

Query: 298 LGLFQLMQFE-----------------------------------GVRPNSLTIGSLLSA 322
           LGLF  M+ E                                   G++PN +TI S L  
Sbjct: 262 LGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALPG 321

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           C++L  L+ G+ +H +  +     +V + TAL+ +YAKC  ++LS  VF    +K  V W
Sbjct: 322 CTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVVAW 381

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP--AYAILADLQQAMNIHCYL 440
           N ++     +G   +++ LF +ML   VEPN  T   +L   +++ LAD +  +  +   
Sbjct: 382 NTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLAD-EGLLVFNSMS 440

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
             +      +  + ++D+ S+ G LE A+    ++PI+
Sbjct: 441 SEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIE 478



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 164/351 (46%), Gaps = 46/351 (13%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH---LRSSLVRAYGH---VSNVRILFD 68
           +++ + +  AA+  +   K++H   I  G  F     L ++L+  +G    V+  R +FD
Sbjct: 79  VLLSVAKACAASGDLVVAKKIHDDAIQFG--FNKDLVLGNALIDMFGKCKFVNGARCVFD 136

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
           +M  +    + ++   Y   G     + +F  M  L     ++ T   ++ AC D  + K
Sbjct: 137 DMVVKDVVSWTSMTYCYVNCGMCRQGILLFREM-GLNGIRANSLTVSSILPACAD--YIK 193

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
           LG  +HG +L    + + +V + L+ MY +   +K AR VFD+M+   +VSWN +++ YF
Sbjct: 194 LGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYF 253

Query: 189 KNAYAKEALVVFDWMLK-----------------------------------SGVEPDCA 213
            N   +  L +F  M K                                   SG++P+  
Sbjct: 254 LNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRI 313

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           ++VS LP C  L+ +  G+ IH  V      +++    ALV +Y KCG +  +R VF+ M
Sbjct: 314 TIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTM 373

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
             +DVV W +MI   +++G    +L LF  M   GV PNS+T   +LS CS
Sbjct: 374 PRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCS 424



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 121/275 (44%), Gaps = 43/275 (15%)

Query: 33  KQLHAFIITS---GPLFTHLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYA 86
           +++H FI+ +   G ++  + S+LV  Y     +   R++FD M  R    +N ++  Y 
Sbjct: 196 REVHGFILRNEMEGNVY--VSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYF 253

Query: 87  QNGASHDSLKMFLGMLRLG------EYN----------------------------PDNY 112
            N      L +F  M + G       +N                            P+  
Sbjct: 254 LNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRI 313

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           T    +  CT+L   + G  +HG V    F  D  +   L+ +Y   G+++ +R VF+ M
Sbjct: 314 TIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTM 373

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
               VV+WNT+I     +    E+L++F+ ML SGVEP+  + + VL  C + +  + G 
Sbjct: 374 PRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGL 433

Query: 233 MI-HELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           ++ + + +   +  +   ++ +VD+  + G + EA
Sbjct: 434 LVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEA 468


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/617 (35%), Positives = 339/617 (54%), Gaps = 4/617 (0%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           S++ + G+V     +FD+MSER +  +N++   YAQNG   +S ++F  M R  +   ++
Sbjct: 186 SMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD-EVNS 244

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T   ++     +  +K G  +HG V+  GFD    V N L+ MY   G    A  VF  
Sbjct: 245 TTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQ 304

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M    ++SWN+L++ +  +  + +AL +   M+ SG   +  +  S L AC      E G
Sbjct: 305 MPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG 364

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           R++H LV    L  N    NALV MY K G ++E+R V  +M  RDVV W ++I GYA +
Sbjct: 365 RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAED 424

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS-SLYYLKRGRSLHAWTIKQNLECEVIV 350
            D   AL  FQ M+ EGV  N +T+ S+LSAC      L+RG+ LHA+ +    E +  V
Sbjct: 425 EDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHV 484

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
           + +LI MYAKC  +  S  +F     +  + WNA+LA   H+G   + ++L  +M    V
Sbjct: 485 KNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGV 544

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
             +  + +  L A A LA L++   +H   ++ GF     +     D+YSKCG +    K
Sbjct: 545 SLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVK 604

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           +    P  ++ +  W+++I+  G HG+ E   + F EM++ G++P  VTF S L ACSHG
Sbjct: 605 MLP--PSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHG 662

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           GL+D+GL  ++ +  +       +H  C++DLLGR+GRL EA   I  MP+KP   VW +
Sbjct: 663 GLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRS 722

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LL +C IHGN++ G  AA+ L +LEPE+   YVL S +++   RW+D ENVR  M  K +
Sbjct: 723 LLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNI 782

Query: 651 RKAPAHSLIEVRNILTA 667
           +K  A S +++++ +++
Sbjct: 783 KKKQACSWVKLKDKVSS 799



 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 179/624 (28%), Positives = 297/624 (47%), Gaps = 44/624 (7%)

Query: 34  QLHAFIITSGPLFTHLRSS----LVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           Q+H F+  SG L     S+    L   YG VS  R +F+EM +R+   + ++M  Y+  G
Sbjct: 63  QVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKG 122

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              + + ++ GM   G    +N +  +VI +C  L    LG  + G+V+ +G +    V 
Sbjct: 123 EPEEVIDIYKGMRGEGVGCNEN-SMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVE 181

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N LI+M  + G V  A  +FD M E   +SWN++ + Y +N + +E+  +F  M +   E
Sbjct: 182 NSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDE 241

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
            +  +V ++L   G++   + GR IH LV        +   N L+ MY   G   EA LV
Sbjct: 242 VNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLV 301

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F +M  +D+++W S++  +  +G   +ALGL   M   G   N +T  S L+AC +  + 
Sbjct: 302 FKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFF 361

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           ++GR LH   +   L    I+  AL+ MY K   +  S +V  +  ++  V WNA++ G 
Sbjct: 362 EKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGY 421

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD-LQQAMNIHCYLIRYGFLSV 448
             +    KA+  F+ M VE V  N  T+ S+L A  +  D L++   +H Y++  GF S 
Sbjct: 422 AEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESD 481

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             V   LI +Y+KCG L S+  +F+   + +++I+ W+ ++A    HGHGE  + L  +M
Sbjct: 482 EHVKNSLITMYAKCGDLSSSQDLFN--GLDNRNIITWNAMLAANAHHGHGEEVLKLVSKM 539

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDL---------------FNFMLENHQTCSRA 553
              GV  ++ +F+  L A +   +L+EG  L               FN   + +  C   
Sbjct: 540 RSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEI 599

Query: 554 DH---------------YTCIVDLLGRAGRLDE---AYDLIRTMPLKPTHAVWGALLGAC 595
                            +  ++  LGR G  +E    +  +  M +KP H  + +LL AC
Sbjct: 600 GEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTAC 659

Query: 596 VIHGNVELGEVAAKWL---FELEP 616
              G V+ G      +   F LEP
Sbjct: 660 SHGGLVDKGLAYYDMIARDFGLEP 683



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 148/538 (27%), Positives = 257/538 (47%), Gaps = 13/538 (2%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC--TDLAWR 127
           M  R+   +NT+M    + G   + ++ F  M  LG   P ++    ++ AC  +   +R
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLG-IKPSSFVIASLVTACGRSGSMFR 59

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           + G+ +HG V  +G   D +V   ++ +Y  +G V  +RKVF+ M + +VVSW +L+ GY
Sbjct: 60  E-GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGY 118

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
                 +E + ++  M   GV  +  S+  V+ +CG LK+  +GR I   V    L   +
Sbjct: 119 SDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKL 178

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
           A  N+L+ M    G+V+ A  +FD+MSERD ++W S+   YA NG +  +  +F LM+  
Sbjct: 179 AVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRF 238

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
               NS T+ +LLS    + + K GR +H   +K   +  V V   L+ MYA       +
Sbjct: 239 HDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEA 298

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
             VF +   K  + WN+++A  V++G +  A+ L   M+      N  T  S L A    
Sbjct: 299 NLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTP 358

Query: 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
              ++   +H  ++  G      +   L+ +Y K G +  + ++  ++P   +D+V W+ 
Sbjct: 359 DFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP--RRDVVAWNA 416

Query: 488 IIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC-SHGGLLDEGLDLFNFMLEN 546
           +I GY      + A++ F+ M   GV  N +T  S L AC   G LL+ G  L  +++  
Sbjct: 417 LIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIV-- 474

Query: 547 HQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
                 +D +    ++ +  + G L  + DL   +  +     W A+L A   HG+ E
Sbjct: 475 -SAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNI-ITWNAMLAANAHHGHGE 530


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 220/600 (36%), Positives = 312/600 (52%), Gaps = 72/600 (12%)

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H  +L TG   DT +   L++ Y N      A  V D + E +V S++TLI  + K    
Sbjct: 36  HAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQF 95

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
             AL  F  ML  G+ PD   + S + AC  L  ++  R +H + +      +    ++L
Sbjct: 96  HHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSL 155

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           V MY+KC  + +A  VFDRM E DVV+W++++  YA  G V  A  LF  M   GV+PN 
Sbjct: 156 VHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNL 215

Query: 314 L-----------------------------------TIGSLLSACSSLYYLKRGRSLHAW 338
           +                                   TI S+L A   L  L  G  +H +
Sbjct: 216 ISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGY 275

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVF------------------ARTSKKKT- 379
            IKQ L  +  V +ALIDMY KC+      QVF                  +R  + ++ 
Sbjct: 276 VIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESS 335

Query: 380 ----------------VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
                           V W +++A C  NG   +A+ELFR+M +  V+PN  T+  LLPA
Sbjct: 336 LRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPA 395

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
              +A L      HC+ +R G  + V V + LID+Y+KCG ++++   F  IP K+  +V
Sbjct: 396 CGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKN--LV 453

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ +IAGY MHG  + A+ +F  M +SG +P+ ++FT  L ACS  GL +EG   FN M
Sbjct: 454 CWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSM 513

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
              +   +R +HY C+V LL RAG+L++AY +IR MP+ P   VWGALL +C +H NV L
Sbjct: 514 SSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSL 573

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           GEVAA+ LFELEP NPGNY+LLS +Y++   W +   VRD+M  KGLRK P  S IEV+N
Sbjct: 574 GEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKN 633



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 173/582 (29%), Positives = 280/582 (48%), Gaps = 84/582 (14%)

Query: 24  AATKSIAGTKQLHAFIITSGPLF--THLRSSLVRAYGH---VSNVRILFDEMSERSSFLY 78
           + T S++ T+Q HA I+ +G LF  THL + L+  Y +    ++  ++ D + E + F +
Sbjct: 24  STTASLSQTRQAHAHILKTG-LFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSF 82

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
           +T++  +++    H +L  F  ML  G   PDN   P  +KAC  L+  K    +HG   
Sbjct: 83  STLIYAFSKFHQFHHALSTFSQMLTRG-LMPDNRVLPSAVKACAGLSALKPARQVHGIAS 141

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
           ++GFD D+FV + L+ MY+   +++ A +VFD M+E  VVSW+ L++ Y +     EA  
Sbjct: 142 VSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKR 201

Query: 199 VFDWMLKSGV-----------------------------------EPDCASVVSVLPACG 223
           +F  M  SGV                                   EPD  ++ SVLPA G
Sbjct: 202 LFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVG 261

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD------ 277
            L+++ MG +IH  V    L  +    +AL+DMY KC   +E   VFD+M   D      
Sbjct: 262 DLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNA 321

Query: 278 -----------------------------VVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
                                        VV+WTSMI   + NG    AL LF+ MQ  G
Sbjct: 322 FIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAG 381

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           V+PNS+TI  LL AC ++  L  G++ H +++++ +  +V V +ALIDMYAKC  ++ S 
Sbjct: 382 VKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASR 441

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
             F     K  V WNA++AG   +G A++A+E+F  M     +P+  +   +L A +   
Sbjct: 442 ICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSG 501

Query: 429 DLQQ-AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
             ++ +   +    +YG  + VE    ++ + S+ G LE A+ +   +P+ + D  VW  
Sbjct: 502 LTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPV-NPDACVWGA 560

Query: 488 IIAGYGMHGH---GETAVSLFKEMVQSGVQPNEVTFTSALHA 526
           +++   +H +   GE A     E+  S   P      S ++A
Sbjct: 561 LLSSCRVHNNVSLGEVAAEKLFELEPS--NPGNYILLSNIYA 600



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 131/267 (49%), Gaps = 4/267 (1%)

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
           R L D+  E +   + +++   +QNG   ++L++F  M ++    P++ T P ++ AC +
Sbjct: 340 RQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREM-QIAGVKPNSVTIPCLLPACGN 398

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
           +A    G A H   L  G   D +VG+ LI MY   G ++A+R  FD +   ++V WN +
Sbjct: 399 IAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAV 458

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR-MIHELVAGGR 242
           I+GY  +  AKEA+ +FD M +SG +PD  S   VL AC      E G    + + +   
Sbjct: 459 IAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYG 518

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVR-NALGL 300
           +   +  +  +V +  + G + +A  +  RM    D   W ++++   ++ +V    +  
Sbjct: 519 IEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAA 578

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +L + E   P +  + S + A   ++
Sbjct: 579 EKLFELEPSNPGNYILLSNIYASKGMW 605


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 233/668 (34%), Positives = 362/668 (54%), Gaps = 23/668 (3%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFT--HLRSSLVRAY---GHVSNVR 64
           P        L+ QYA  KS+   + LHA II    L +  +L ++L++ Y   GH+   +
Sbjct: 4   PPQNRSFYNLLIQYADQKSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAK 63

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGA--SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
           ++F+ +  ++   YN ++   + NG+  S+  L++F  M+      PD +T+P V  A  
Sbjct: 64  LVFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIA-NNILPDAHTFPGVFTA-- 120

Query: 123 DLAWRKLGIALHGR-VLITGFDM----DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
             A   LG     R V + G       D FVG+ L+  Y   G V  ARK+FD M E ++
Sbjct: 121 --AALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNL 178

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVV--SVLPACGYLKEIEMGRMIH 235
           VSW T+ISGY     AKEAL VF  M    VE +    V  SVL A    + ++ G+ +H
Sbjct: 179 VSWTTMISGYASKQMAKEALGVFGLM--RLVEGNLNEFVFTSVLSALVCPEFVDSGKQVH 236

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
            +V    + + ++  NALV MY KCG++N + ++F+  S+++ +TW+++I GY+  GD  
Sbjct: 237 CVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSH 296

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            AL LF  M + G  P+  T+  +L ACS +  ++ G+  H + +K   E ++   TAL+
Sbjct: 297 KALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALV 356

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           DMYAK      + + F    +   V W +I+AG V NG   +A+ ++ +M +  + PN+ 
Sbjct: 357 DMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNEL 416

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           T+ S+L A + LA L+Q   IH   I+YG    + + + L  +Y+KCGSLE    IF  +
Sbjct: 417 TMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRM 476

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
               +DIV W+ +I+G   +GHG  A+ LF+EM   G +P+ +TF + L ACSH G++  
Sbjct: 477 L--QRDIVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKR 534

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           G   FN M +      R +HY C+VD+L RAG+L+EA + I +  +     +W  LL AC
Sbjct: 535 GWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDHGMCLWRILLPAC 594

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
             H N ELG  A + L EL       YVLLS +Y+A+ R  D   VR +M  +G+RK   
Sbjct: 595 RNHCNYELGAYAGEKLMELGSRESSAYVLLSSIYTAMGRLADVVRVRRMMKVRGVRKETG 654

Query: 656 HSLIEVRN 663
            S IE+++
Sbjct: 655 CSWIELKS 662


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 229/659 (34%), Positives = 356/659 (54%), Gaps = 16/659 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNVRILFD-----EMSE 72
           L++Q   TK+    K LH  + TS  PL T L +SL+  Y   ++    F      E S+
Sbjct: 58  LLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSK 117

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           R    Y++++  +A N     +++MF  +L      P+ Y +  VI+AC    + K G+ 
Sbjct: 118 RDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLC 177

Query: 133 LHGRVLITG-FDMDTFVGNCLIAMYM---NFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
           L G VL TG FD    VG  LI M++   +  ++++ARKVFD M E +VV+W  +I+   
Sbjct: 178 LFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLA 237

Query: 189 KNAYAKEALVVF-DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
           +  Y  EA+ +F + ++ SG  PD  ++  ++  C  ++ + +G+ +H  V    L  ++
Sbjct: 238 QYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDL 297

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD--VRNALGLFQLMQ 305
               +LVDMY KCG V EAR VFD M E +V++WT+++NGY   G    R A+ +F  M 
Sbjct: 298 CVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNML 357

Query: 306 FEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
            +G V PN  T   +L AC+SL     G  +H  TIK  L     V   L+ +YAK   +
Sbjct: 358 LQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRM 417

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
           + + + F    +K  V    +    V +       +L R++       +  T  SLL   
Sbjct: 418 ESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGA 477

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           A +  + +   IH  +++ GF + + V+  LI +YSKCG+ E+A ++F+++  +D +++ 
Sbjct: 478 ACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDM--EDCNVIT 535

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+ II G+  HG    A+ LF  M+++GV+PN+VT+ + L ACSH GL+DE    F  M 
Sbjct: 536 WTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMR 595

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
           +NH    R +HY C+VDLLGR+G L EA + I +MP      VW   LG+C +H N +LG
Sbjct: 596 DNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLG 655

Query: 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           E AAK + E EP +P  Y+LLS LY+   RW+D   +R  M +K + K    S IEV N
Sbjct: 656 EHAAKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVEN 714



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 149/532 (28%), Positives = 252/532 (47%), Gaps = 56/532 (10%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           T  +++K C       LG  LH ++  +   +DT + N LI +Y    +   A  +F +M
Sbjct: 54  TSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSM 113

Query: 173 W--EHSVVSWNTLISGYFKNAYAKEALVVFDW-MLKSGVEPDCASVVSVLPAC---GYLK 226
              +  VVS++++IS +  N    +A+ +FD  +L+ GV P+     +V+ AC   G+ K
Sbjct: 114 ENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFK 173

Query: 227 EIEMGRMIHELV-AGGRLGKNIAAWNALVDMYVKCGSVNE---ARLVFDRMSERDVVTWT 282
               G  +   V   G    ++     L+DM+VK  S+ +   AR VFD+M E++VVTWT
Sbjct: 174 ---TGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWT 230

Query: 283 SMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
            MI   A  G    A+ LF +++   G  P+  T+  L+S C+ + +L  G+ LH+W I+
Sbjct: 231 LMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIR 290

Query: 342 QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVH--NGLARKAV 399
             L  ++ V  +L+DMYAKC LV+ + +VF    +   + W A++ G V    G  R+A+
Sbjct: 291 SGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAM 350

Query: 400 ELFRQMLVE-VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
            +F  ML++  V PN  T + +L A A L D      +H   I+ G  ++  V  GL+ +
Sbjct: 351 RMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSV 410

Query: 459 YSKCGSLESAHKIFSEIPIKD--KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
           Y+K G +ESA K F  +  K+   + VV    +  + +  + E  +    E V SGV  +
Sbjct: 411 YAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNL--NSEQDLDREVEYVGSGV--S 466

Query: 517 EVTFTSALHACSHGGLLDEG---------------LDLFNFMLENHQTCSRAD------- 554
             T+ S L   +  G + +G               L + N ++  +  C   +       
Sbjct: 467 SFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFN 526

Query: 555 --------HYTCIVDLLGRAGRLDEAYDLIRTM---PLKPTHAVWGALLGAC 595
                    +T I++   + G   +A +L   M    +KP    + A+L AC
Sbjct: 527 DMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSAC 578


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/665 (32%), Positives = 357/665 (53%), Gaps = 63/665 (9%)

Query: 56  AYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
           A G      ++ + ++   +  +N +++ + + G    ++ +   MLR G    D++T P
Sbjct: 63  ACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGT-RLDHFTLP 121

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
            V+KAC +L   + G A HG +   GF+ + F+ N L+AMY   G ++ A  +FD + + 
Sbjct: 122 HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQR 181

Query: 176 ---SVVSWNTLISGYFKNAYAKEALVVFDWML------KSGVEPDCASVVSVLPACGYLK 226
               V+SWN+++S + K++ A  AL +F  M        +    D  S+V++LPACG LK
Sbjct: 182 GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 241

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
            +   + +H          ++   NAL+D Y KCG +  A  VF+ M  +DVV+W +M+ 
Sbjct: 242 AVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 301

Query: 287 GYALNGDVR-----------------------------------NALGLFQLMQFEGVRP 311
           GY+ +G+ +                                    AL +F+ M F G  P
Sbjct: 302 GYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLP 361

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL----------ECEVIVETALIDMYAKC 361
           N +TI S+LSAC+SL    +G  +HA+++K  L          + +++V  ALIDMY+KC
Sbjct: 362 NCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKC 421

Query: 362 NLVKLSFQVFART--SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV--VEPNDATL 417
              K +  +F      ++  V W  ++ G    G +  A++LF +M+ E   V PN  T+
Sbjct: 422 RSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTI 481

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFL--SVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           + +L A A LA ++    IH Y++R+     S   V+  LI++YSKCG +++A  +F  +
Sbjct: 482 SCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSM 541

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
               K  + W+ ++ GYGMHG G  A+ +F +M ++G  P+++TF   L+ACSH G++D+
Sbjct: 542 --SQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQ 599

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           GL  F+ M  ++    RA+HY   +DLL R GRLD+A+  ++ MP++PT  VW ALL AC
Sbjct: 600 GLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSAC 659

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
            +H NVEL E A   L E+  EN G+Y L+S +Y+   RWKD   +R +M + G++K P 
Sbjct: 660 RVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPG 719

Query: 656 HSLIE 660
            S ++
Sbjct: 720 CSWVQ 724



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 148/509 (29%), Positives = 246/509 (48%), Gaps = 58/509 (11%)

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           +G  ++A Y+  G    A  V + +     V WN LI  + K      A+ V   ML++G
Sbjct: 53  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
              D  ++  VL ACG L     G   H L+       N+   NALV MY +CGS+ EA 
Sbjct: 113 TRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEAS 172

Query: 268 LVFDRMSER---DVVTWTSMINGYALNGDVRNALGLFQLMQF------EGVRPNSLTIGS 318
           ++FD +++R   DV++W S+++ +  + +   AL LF  M           R + ++I +
Sbjct: 173 MIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVN 232

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA------ 372
           +L AC SL  + + + +H   I+     +V V  ALID YAKC L++ + +VF       
Sbjct: 233 ILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 292

Query: 373 ------------------------RTSKKKTVP-----WNAILAGCVHNGLARKAVELFR 403
                                   +  +K+ +P     W A++AG    G + +A+ +FR
Sbjct: 293 VVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFR 352

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV----------VEVST 453
           QM+     PN  T+ S+L A A L    Q M IH Y ++   L++          + V  
Sbjct: 353 QMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYN 412

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS-- 511
            LID+YSKC S ++A  IF +IP++++++V W+V+I G+  +G    A+ LF EM+    
Sbjct: 413 ALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPY 472

Query: 512 GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY-TCIVDLLGRAGRLD 570
           GV PN  T +  L AC+H   +  G  +  ++L +HQ  S A     C++++  + G +D
Sbjct: 473 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVD 532

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            A  +  +M  K   + W +++    +HG
Sbjct: 533 TARHVFDSMSQKSAIS-WTSMMTGYGMHG 560



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 9/162 (5%)

Query: 33  KQLHAFII------TSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYA 86
           KQ+HA+++      +S     +   ++    G V   R +FD MS++S+  + ++M  Y 
Sbjct: 498 KQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 557

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT-GFDMD 145
            +G   ++L +F  M + G + PD+ T+ +V+ AC+       G++    +    G    
Sbjct: 558 MHGRGSEALDIFDKMRKAG-FVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPR 616

Query: 146 TFVGNCLIAMYMNFGEV-KAARKVFDAMWEHSVVSWNTLISG 186
                  I +   FG + KA + V D   E + V W  L+S 
Sbjct: 617 AEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSA 658


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/617 (35%), Positives = 339/617 (54%), Gaps = 4/617 (0%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           S++ + G+V     +FD+MSER +  +N++   YAQNG   +S ++F  M R  +   ++
Sbjct: 203 SMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD-EVNS 261

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T   ++     +  +K G  +HG V+  GFD    V N L+ MY   G    A  VF  
Sbjct: 262 TTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQ 321

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M    ++SWN+L++ +  +  + +AL +   M+ SG   +  +  S L AC      E G
Sbjct: 322 MPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG 381

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           R++H LV    L  N    NALV MY K G ++E+R V  +M  RDVV W ++I GYA +
Sbjct: 382 RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAED 441

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS-SLYYLKRGRSLHAWTIKQNLECEVIV 350
            D   AL  FQ M+ EGV  N +T+ S+LSAC      L+RG+ LHA+ +    E +  V
Sbjct: 442 EDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHV 501

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
           + +LI MYAKC  +  S  +F     +  + WNA+LA   H+G   + ++L  +M    V
Sbjct: 502 KNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGV 561

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
             +  + +  L A A LA L++   +H   ++ GF     +     D+YSKCG +    K
Sbjct: 562 SLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVK 621

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           +    P  ++ +  W+++I+  G HG+ E   + F EM++ G++P  VTF S L ACSHG
Sbjct: 622 MLP--PSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHG 679

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           GL+D+GL  ++ +  +       +H  C++DLLGR+GRL EA   I  MP+KP   VW +
Sbjct: 680 GLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRS 739

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LL +C IHGN++ G  AA+ L +LEPE+   YVL S +++   RW+D ENVR  M  K +
Sbjct: 740 LLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNI 799

Query: 651 RKAPAHSLIEVRNILTA 667
           +K  A S +++++ +++
Sbjct: 800 KKKQACSWVKLKDKVSS 816



 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 179/624 (28%), Positives = 297/624 (47%), Gaps = 44/624 (7%)

Query: 34  QLHAFIITSGPLFTHLRSS----LVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           Q+H F+  SG L     S+    L   YG VS  R +F+EM +R+   + ++M  Y+  G
Sbjct: 80  QVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKG 139

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              + + ++ GM   G    +N +  +VI +C  L    LG  + G+V+ +G +    V 
Sbjct: 140 EPEEVIDIYKGMRGEGVGCNEN-SMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVE 198

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N LI+M  + G V  A  +FD M E   +SWN++ + Y +N + +E+  +F  M +   E
Sbjct: 199 NSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDE 258

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
            +  +V ++L   G++   + GR IH LV        +   N L+ MY   G   EA LV
Sbjct: 259 VNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLV 318

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F +M  +D+++W S++  +  +G   +ALGL   M   G   N +T  S L+AC +  + 
Sbjct: 319 FKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFF 378

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           ++GR LH   +   L    I+  AL+ MY K   +  S +V  +  ++  V WNA++ G 
Sbjct: 379 EKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGY 438

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD-LQQAMNIHCYLIRYGFLSV 448
             +    KA+  F+ M VE V  N  T+ S+L A  +  D L++   +H Y++  GF S 
Sbjct: 439 AEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESD 498

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             V   LI +Y+KCG L S+  +F+   + +++I+ W+ ++A    HGHGE  + L  +M
Sbjct: 499 EHVKNSLITMYAKCGDLSSSQDLFN--GLDNRNIITWNAMLAANAHHGHGEEVLKLVSKM 556

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDL---------------FNFMLENHQTCSRA 553
              GV  ++ +F+  L A +   +L+EG  L               FN   + +  C   
Sbjct: 557 RSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEI 616

Query: 554 DH---------------YTCIVDLLGRAGRLDE---AYDLIRTMPLKPTHAVWGALLGAC 595
                            +  ++  LGR G  +E    +  +  M +KP H  + +LL AC
Sbjct: 617 GEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTAC 676

Query: 596 VIHGNVELGEVAAKWL---FELEP 616
              G V+ G      +   F LEP
Sbjct: 677 SHGGLVDKGLAYYDMIARDFGLEP 700



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 154/551 (27%), Positives = 264/551 (47%), Gaps = 13/551 (2%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +G V   R LFD M  R+   +NT+M    + G   + ++ F  M  LG   P ++    
Sbjct: 5   FGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLG-IKPSSFVIAS 63

Query: 117 VIKAC--TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
           ++ AC  +   +R+ G+ +HG V  +G   D +V   ++ +Y  +G V  +RKVF+ M +
Sbjct: 64  LVTACGRSGSMFRE-GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPD 122

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
            +VVSW +L+ GY      +E + ++  M   GV  +  S+  V+ +CG LK+  +GR I
Sbjct: 123 RNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQI 182

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
              V    L   +A  N+L+ M    G+V+ A  +FD+MSERD ++W S+   YA NG +
Sbjct: 183 IGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHI 242

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             +  +F LM+      NS T+ +LLS    + + K GR +H   +K   +  V V   L
Sbjct: 243 EESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTL 302

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           + MYA       +  VF +   K  + WN+++A  V++G +  A+ L   M+      N 
Sbjct: 303 LRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNY 362

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
            T  S L A       ++   +H  ++  G      +   L+ +Y K G +  + ++  +
Sbjct: 363 VTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQ 422

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC-SHGGLL 533
           +P   +D+V W+ +I GY      + A++ F+ M   GV  N +T  S L AC   G LL
Sbjct: 423 MP--RRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLL 480

Query: 534 DEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
           + G  L  +++        +D +    ++ +  + G L  + DL   +  +     W A+
Sbjct: 481 ERGKPLHAYIV---SAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNI-ITWNAM 536

Query: 592 LGACVIHGNVE 602
           L A   HG+ E
Sbjct: 537 LAANAHHGHGE 547



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 133/445 (29%), Positives = 224/445 (50%), Gaps = 13/445 (2%)

Query: 155 MYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
           MY  FG VK AR +FD M   + VSWNT++SG  +     E +  F  M   G++P    
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 215 VVSVLPACGYLKEI-EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           + S++ ACG    +   G  +H  VA   L  ++    A++ +Y   G V+ +R VF+ M
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
            +R+VV+WTS++ GY+  G+    + +++ M+ EGV  N  ++  ++S+C  L     GR
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            +    +K  LE ++ VE +LI M      V  +  +F + S++ T+ WN+I A    NG
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
              ++  +F  M     E N  T+++LL     +   +    IH  +++ GF SVV V  
Sbjct: 241 HIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCN 300

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            L+ +Y+  G    A+ +F ++P   KD++ W+ ++A +   G    A+ L   M+ SG 
Sbjct: 301 TLLRMYAGAGRSVEANLVFKQMPT--KDLISWNSLMASFVNDGRSLDALGLLCSMISSGK 358

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN----HQTCSRADHYTCIVDLLGRAGRL 569
             N VTFTSAL AC      ++G  L   ++ +    +Q    A     +V + G+ G +
Sbjct: 359 SVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA-----LVSMYGKIGEM 413

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGA 594
            E+  ++  MP +   A W AL+G 
Sbjct: 414 SESRRVLLQMPRRDVVA-WNALIGG 437


>gi|357446017|ref|XP_003593286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482334|gb|AES63537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 622

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/586 (34%), Positives = 330/586 (56%), Gaps = 9/586 (1%)

Query: 82  MKMYAQNGASHDSLKMFLGM-LRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT 140
           +K     G  H +L+ F  +      +N   +  P VIKAC+   +   G  LH    IT
Sbjct: 36  IKTLVSMGLYHQTLQFFTQLHFSAHHFNSIPFVLPSVIKACSFTHFHAFGTQLHCLAFIT 95

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           G   D  V N +I+MY  F ++++AR+VFD M     ++WN++I+ Y +N    EAL + 
Sbjct: 96  GSYTDPIVSNSIISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQML 155

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEI--EMGRMIHELVAGG---RLGKNIAAWNALVD 255
                 G  P    + S++  CG   ++   +GR IH LV      R+  ++    A VD
Sbjct: 156 KDFYFLGFLPKPELLASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVD 215

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
            Y +CG    AR VFD M  ++ V+WT++I+G A N D   AL  ++ MQ EGV PN +T
Sbjct: 216 FYFRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVT 275

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC-NLVKLSFQVFART 374
           + +LL+AC+   ++K G+ +H +  ++  +       ALI +Y +C   + L+ ++F  +
Sbjct: 276 LIALLAACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGS 335

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
           S +  V W++I+      G + KA++LF +M  E  EPN  TL +++ A   L+  +   
Sbjct: 336 SLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGG 395

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            IH Y++++G    + V   LI++Y+KCGSL+ + KIF E+P +D   V W+ +I+ YG+
Sbjct: 396 VIHGYILKFGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDS--VTWNSMISAYGL 453

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           HG+GE A+  F EM + GV+ + VTF + L AC+H GL+ EG  LF  +  + +     +
Sbjct: 454 HGYGEQALQHFYEMKERGVKLDAVTFLAVLSACNHAGLVTEGQQLFEQVNADCEIPITIE 513

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HY C++DL GR+G+L++A +++RTMP+KP+  +W +L+ +C +HG +++ E  +  L   
Sbjct: 514 HYACLIDLHGRSGKLEDALEILRTMPMKPSARIWSSLVSSCKLHGRLDIAESLSSQLIRS 573

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           EP N  +Y LLS +++   RW D E VR+ M  + LRK    S IE
Sbjct: 574 EPNNAASYTLLSMIHAEKGRWLDIEQVRETMKLQRLRKCYGFSRIE 619



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 150/542 (27%), Positives = 262/542 (48%), Gaps = 30/542 (5%)

Query: 5   SHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG----PLFTHLRSSLVRAYGHV 60
           S H       ++  +++  + T   A   QLH     +G    P+ ++   S+   +  +
Sbjct: 58  SAHHFNSIPFVLPSVIKACSFTHFHAFGTQLHCLAFITGSYTDPIVSNSIISMYAKFFDI 117

Query: 61  SNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKA 120
            + R +FD M  R +  +N+++  Y QNG   ++L+M      LG + P       ++  
Sbjct: 118 ESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQMLKDFYFLG-FLPKPELLASMVSM 176

Query: 121 C---TDLAWRKLGIALHGRVLITG---FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
           C    DL WR +G  +HG V++ G        F+    +  Y   G+   AR VFD M  
Sbjct: 177 CGREMDLGWR-IGRQIHGLVVVDGRIRIQHSVFLSTAFVDFYFRCGDSLMARSVFDEMEV 235

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
            + VSW  +ISG   N     AL  +  M   GV P+  +++++L AC     ++ G+ I
Sbjct: 236 KNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVTLIALLAACARPGFVKYGKEI 295

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCG-SVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           H            +   AL+ +Y +CG S++ A  +F+  S RDVV W+S+I  YA  G+
Sbjct: 296 HGYAFRRGFDSCHSFSPALIYLYCECGQSLHLAERIFEGSSLRDVVLWSSIIGSYARRGE 355

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              AL LF  M+ E   PN +T+ +++SAC++L   K G  +H + +K  +   + V  A
Sbjct: 356 SDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGGVIHGYILKFGIGFSIFVCNA 415

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           LI+MYAKC  +  S ++F     + +V WN++++    +G   +A++ F +M    V+ +
Sbjct: 416 LINMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHGYGEQALQHFYEMKERGVKLD 475

Query: 414 DATLNSLLPA---YAILADLQQ---AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
             T  ++L A     ++ + QQ    +N  C +        +E    LID++ + G LE 
Sbjct: 476 AVTFLAVLSACNHAGLVTEGQQLFEQVNADCEIP-----ITIEHYACLIDLHGRSGKLED 530

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV---TFTSAL 524
           A +I   +P+K     +WS +++   +HG  + A SL  ++++S  +PN     T  S +
Sbjct: 531 ALEILRTMPMK-PSARIWSSLVSSCKLHGRLDIAESLSSQLIRS--EPNNAASYTLLSMI 587

Query: 525 HA 526
           HA
Sbjct: 588 HA 589


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/638 (33%), Positives = 343/638 (53%), Gaps = 8/638 (1%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQN 88
           K++H+ II +G      +++SL+  YG   ++   R +F  +S R    YNT++ +YAQ 
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
               + L +F  M   G  +PD  TY  ++ A T  +    G  +H   +  G + D  V
Sbjct: 208 AYVKECLGLFGQMSSEG-ISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRV 266

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           G  L+ M +  G+V +A++ F  + +  VV +N LI+   ++ +  EA   +  M   GV
Sbjct: 267 GTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGV 326

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
             +  + +S+L AC   K +E G++IH  ++      ++   NAL+ MY +CG + +AR 
Sbjct: 327 ALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARE 386

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +F  M +RD+++W ++I GYA   D   A+ L++ MQ EGV+P  +T   LLSAC++   
Sbjct: 387 LFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSA 446

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
              G+ +H   ++  ++    +  AL++MY +C  +  +  VF  T  +  + WN+++AG
Sbjct: 447 YADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAG 506

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
              +G    A +LF++M  E +EP++ T  S+L        L+    IH  +   G    
Sbjct: 507 HAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLD 566

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           V +   LI++Y +CGSL+ A  +F  +  + +D++ W+ +I G    G    A+ LF +M
Sbjct: 567 VNLGNALINMYIRCGSLQDARNVFHSL--QHRDVMSWTAMIGGCADQGEDMKAIELFWQM 624

Query: 509 VQSGVQPNE-VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
              G +P +  TFTS L AC+H GL+ EG  +F+ M   +      +HY C+V LLGRA 
Sbjct: 625 QNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRAR 684

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
           R  EA  LI  MP  P  AVW  LLGAC IHGN+ L E AA    +L   NP  Y+LLS 
Sbjct: 685 RFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSN 744

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           +Y+A  RW D   +R VM+ +G+RK P  S IEV NI+
Sbjct: 745 VYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNII 782



 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 177/633 (27%), Positives = 315/633 (49%), Gaps = 12/633 (1%)

Query: 5   SHHTLPKTTHLV--IKLVQQYAATKSIAGTKQLHAFIITSG--P--LFTHLRSSLVRAYG 58
           +H   P  T     + L+Q     + +   K++HA ++ +G  P    ++L  ++     
Sbjct: 17  THQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCR 76

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
            V +   +F EM  R    +N+++  YAQ G    + ++F  M   G + P+  TY  ++
Sbjct: 77  SVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAG-FIPNKITYISIL 135

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
            AC   A  + G  +H +++  G+  D  V N L++MY   G++  AR+VF  +    VV
Sbjct: 136 TACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVV 195

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           S+NT++  Y + AY KE L +F  M   G+ PD  + +++L A      ++ G+ IH+L 
Sbjct: 196 SYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLT 255

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               L  +I    ALV M V+CG V+ A+  F  +++RDVV + ++I   A +G    A 
Sbjct: 256 VEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAF 315

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
             +  M+ +GV  N  T  S+L+ACS+   L+ G+ +H+   +     +V +  ALI MY
Sbjct: 316 EQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMY 375

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
           A+C  +  + ++F    K+  + WNAI+AG        +A+ L++QM  E V+P   T  
Sbjct: 376 ARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFL 435

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
            LL A A  +       IH  ++R G  S   ++  L+++Y +CGSL  A  +F     +
Sbjct: 436 HLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFE--GTQ 493

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
            +D++ W+ +IAG+  HG  ETA  LF+EM    ++P+ +TF S L  C +   L+ G  
Sbjct: 494 ARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ 553

Query: 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
           +   + E+       +    ++++  R G L +A ++  ++  +   + W A++G C   
Sbjct: 554 IHGRITESGLQLD-VNLGNALINMYIRCGSLQDARNVFHSLQHRDVMS-WTAMIGGCADQ 611

Query: 599 GNVELGEVAAKWLFELEPENPGNYVLLSKLYSA 631
           G  ++  +   W  + E   P +    + + SA
Sbjct: 612 GE-DMKAIELFWQMQNEGFRPPDGSTFTSILSA 643


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/617 (35%), Positives = 339/617 (54%), Gaps = 4/617 (0%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           S++ + G+V     +FD+MSER +  +N++   YAQNG   +S ++F  M R  +   ++
Sbjct: 293 SMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD-EVNS 351

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T   ++     +  +K G  +HG V+  GFD    V N L+ MY   G    A  VF  
Sbjct: 352 TTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQ 411

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M    ++SWN+L++ +  +  + +AL +   M+ SG   +  +  S L AC      E G
Sbjct: 412 MPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG 471

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           R++H LV    L  N    NALV MY K G ++E+R V  +M  RDVV W ++I GYA +
Sbjct: 472 RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAED 531

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS-SLYYLKRGRSLHAWTIKQNLECEVIV 350
            D   AL  FQ M+ EGV  N +T+ S+LSAC      L+RG+ LHA+ +    E +  V
Sbjct: 532 EDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHV 591

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
           + +LI MYAKC  +  S  +F     +  + WNA+LA   H+G   + ++L  +M    V
Sbjct: 592 KNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGV 651

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
             +  + +  L A A LA L++   +H   ++ GF     +     D+YSKCG +    K
Sbjct: 652 SLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVK 711

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           +    P  ++ +  W+++I+  G HG+ E   + F EM++ G++P  VTF S L ACSHG
Sbjct: 712 MLP--PSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHG 769

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           GL+D+GL  ++ +  +       +H  C++DLLGR+GRL EA   I  MP+KP   VW +
Sbjct: 770 GLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRS 829

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LL +C IHGN++ G  AA+ L +LEPE+   YVL S +++   RW+D ENVR  M  K +
Sbjct: 830 LLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNI 889

Query: 651 RKAPAHSLIEVRNILTA 667
           +K  A S +++++ +++
Sbjct: 890 KKKQACSWVKLKDKVSS 906



 Score =  238 bits (608), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 171/624 (27%), Positives = 285/624 (45%), Gaps = 69/624 (11%)

Query: 34  QLHAFIITSGPLFTHLRSS----LVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           Q+H F+  SG L     S+    L   YG VS  R +F+EM +R+   + ++M  Y+  G
Sbjct: 195 QVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKG 254

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              + + ++                              LG  + G+V+ +G +    V 
Sbjct: 255 EPEEVIDIYKD--------------------------ESLGRQIIGQVVKSGLESKLAVE 288

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N LI+M  + G V  A  +FD M E   +SWN++ + Y +N + +E+  +F  M +   E
Sbjct: 289 NSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDE 348

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
            +  +V ++L   G++   + GR IH LV        +   N L+ MY   G   EA LV
Sbjct: 349 VNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLV 408

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F +M  +D+++W S++  +  +G   +ALGL   M   G   N +T  S L+AC +  + 
Sbjct: 409 FKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFF 468

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           ++GR LH   +   L    I+  AL+ MY K   +  S +V  +  ++  V WNA++ G 
Sbjct: 469 EKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGY 528

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD-LQQAMNIHCYLIRYGFLSV 448
             +    KA+  F+ M VE V  N  T+ S+L A  +  D L++   +H Y++  GF S 
Sbjct: 529 AEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESD 588

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             V   LI +Y+KCG L S+  +F+   + +++I+ W+ ++A    HGHGE  + L  +M
Sbjct: 589 EHVKNSLITMYAKCGDLSSSQDLFN--GLDNRNIITWNAMLAANAHHGHGEEVLKLVSKM 646

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDL---------------FNFMLENHQTCSRA 553
              GV  ++ +F+  L A +   +L+EG  L               FN   + +  C   
Sbjct: 647 RSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEI 706

Query: 554 DH---------------YTCIVDLLGRAGRLDE---AYDLIRTMPLKPTHAVWGALLGAC 595
                            +  ++  LGR G  +E    +  +  M +KP H  + +LL AC
Sbjct: 707 GEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTAC 766

Query: 596 VIHGNVELGEVAAKWL---FELEP 616
              G V+ G      +   F LEP
Sbjct: 767 SHGGLVDKGLAYYDMIARDFGLEP 790



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 148/563 (26%), Positives = 257/563 (45%), Gaps = 38/563 (6%)

Query: 45  LFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL 104
           L T+   ++   +G V   R LFD M  R+   +NT+M    + G   + ++ F  M  L
Sbjct: 108 LHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDL 167

Query: 105 GEYNPDNYTYPIVIKAC--TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEV 162
           G   P ++    ++ AC  +   +R+ G+ +HG V  +G   D +V   ++ +Y  +G V
Sbjct: 168 G-IKPSSFVIASLVTACGRSGSMFRE-GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLV 225

Query: 163 KAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC 222
             +RKVF+ M + +VVSW +L+ GY      +E + ++                      
Sbjct: 226 SCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIY---------------------- 263

Query: 223 GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
              K+  +GR I   V    L   +A  N+L+ M    G+V+ A  +FD+MSERD ++W 
Sbjct: 264 ---KDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWN 320

Query: 283 SMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           S+   YA NG +  +  +F LM+      NS T+ +LLS    + + K GR +H   +K 
Sbjct: 321 SIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKM 380

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
             +  V V   L+ MYA       +  VF +   K  + WN+++A  V++G +  A+ L 
Sbjct: 381 GFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLL 440

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
             M+      N  T  S L A       ++   +H  ++  G      +   L+ +Y K 
Sbjct: 441 CSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKI 500

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G +  + ++  ++P   +D+V W+ +I GY      + A++ F+ M   GV  N +T  S
Sbjct: 501 GEMSESRRVLLQMP--RRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVS 558

Query: 523 ALHAC-SHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTM 579
            L AC   G LL+ G  L  +++        +D +    ++ +  + G L  + DL   +
Sbjct: 559 VLSACLLPGDLLERGKPLHAYIV---SAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGL 615

Query: 580 PLKPTHAVWGALLGACVIHGNVE 602
             +     W A+L A   HG+ E
Sbjct: 616 DNRNI-ITWNAMLAANAHHGHGE 637



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 120/455 (26%), Positives = 202/455 (44%), Gaps = 69/455 (15%)

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFD---------W----------------------ML 204
           SV+  NTLI+ Y K    K A  +FD         W                      M 
Sbjct: 106 SVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMC 165

Query: 205 KSGVEPDCASVVSVLPACGYLKEI-EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
             G++P    + S++ ACG    +   G  +H  VA   L  ++    A++ +Y   G V
Sbjct: 166 DLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLV 225

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
           + +R VF+ M +R+VV+WTS++ GY+  G+    + ++        +  SL         
Sbjct: 226 SCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIY--------KDESL--------- 268

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
                   GR +    +K  LE ++ VE +LI M      V  +  +F + S++ T+ WN
Sbjct: 269 --------GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWN 320

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           +I A    NG   ++  +F  M     E N  T+++LL     +   +    IH  +++ 
Sbjct: 321 SIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKM 380

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
           GF SVV V   L+ +Y+  G    A+ +F ++P   KD++ W+ ++A +   G    A+ 
Sbjct: 381 GFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPT--KDLISWNSLMASFVNDGRSLDALG 438

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN----HQTCSRADHYTCI 559
           L   M+ SG   N VTFTSAL AC      ++G  L   ++ +    +Q    A     +
Sbjct: 439 LLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA-----L 493

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           V + G+ G + E+  ++  MP +   A W AL+G 
Sbjct: 494 VSMYGKIGEMSESRRVLLQMPRRDVVA-WNALIGG 527


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/598 (34%), Positives = 322/598 (53%), Gaps = 3/598 (0%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F E+  ++   ++ ++    QN      L++F  M ++G        Y  V ++C  L+
Sbjct: 233 IFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVG-IGVSQSIYASVFRSCAGLS 291

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             K+G  LH   L   F  D  VG   + MY   G +  A+++F+++ +HS+  +N +I 
Sbjct: 292 ALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIV 351

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           G  +N    EAL  F  +LKSG+  +  S+     AC  +K    GR +H L     L  
Sbjct: 352 GCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRS 411

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           NI   N+++DMY KC +++EA  +FD M  RD V+W ++I  +  NG+    L LF  M 
Sbjct: 412 NICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASML 471

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
              + P+  T GS+L ACSS   L  G  +H   IK  L  +  V  ALIDMY KC +++
Sbjct: 472 RLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIE 531

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + ++  R  ++  V WNAI+AG      +  A   F +ML   V+P++ T   +L A A
Sbjct: 532 EAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACA 591

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            LA +     IH  +I+    S V +++ L+D+YSKCG+++ +  +F + P  +KD V W
Sbjct: 592 NLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAP--NKDFVTW 649

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I GY  HG GE A+  F+ M    V+PN  TF S L AC+H G +D+GL  FN ML 
Sbjct: 650 NAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLT 709

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
            +    + +HY+C++D++GR+GR+ EA  LI+ MP +    +W  LL  C IHGN+E+ E
Sbjct: 710 EYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAE 769

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            A   + +LEPE+    +LLS +Y+    W     +R +M    L+K P  S IEV++
Sbjct: 770 KATNAILQLEPEDSSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSWIEVKD 827



 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 187/661 (28%), Positives = 310/661 (46%), Gaps = 52/661 (7%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPL-FTHLRSSLVRAY---GHVSNVR 64
           LP        ++Q+ +   S+   KQ HA +I SG +   ++ + L++ Y    H++   
Sbjct: 39  LPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAY 98

Query: 65  ILFDEMSERSSFLYNTVMKMYA-------------------------------QNGASHD 93
            +F++MS+R    YNT++  YA                               QNG    
Sbjct: 99  KVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRK 158

Query: 94  SLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLI 153
           S+ +FL M R  E   D  T+ +V+KAC+ L    LGI +HG ++  GF  D   G+ L+
Sbjct: 159 SIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALL 218

Query: 154 AMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCA 213
            MY     +  + K+F  +   + V W+ +I+G  +N      L +F  M K G+    +
Sbjct: 219 DMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQS 278

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
              SV  +C  L  +++G  +H        G +I    A +DMY KCGS+ +A+ +F+ +
Sbjct: 279 IYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSL 338

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
            +  +  + ++I G   N     AL  FQL+   G+  N +++    SAC+S+     GR
Sbjct: 339 PKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGR 398

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            LH+ ++K  L   + V  +++DMY KC  +  +  +F    ++  V WNA++A    NG
Sbjct: 399 QLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNG 458

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
              + + LF  ML   +EP+  T  S+L A +    L   M IH  +I+ G      V  
Sbjct: 459 NEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGG 518

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            LID+Y KCG +E A KI     I+ + +V W+ IIAG+ +  H E A S F EM++  V
Sbjct: 519 ALIDMYCKCGMIEEAKKIHDR--IEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSV 576

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFN--FMLENHQTCSRADHY--TCIVDLLGRAGRL 569
           +P+  T+   L AC++   +  G  +      LE H     +D Y  + +VD+  + G +
Sbjct: 577 KPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELH-----SDVYITSTLVDMYSKCGNM 631

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLLSK 627
            ++  +    P K     W A++     HG   LGE A  +   ++ EN  P +   +S 
Sbjct: 632 QDSALVFEKAPNKD-FVTWNAMICGYAQHG---LGEEALGYFERMQLENVRPNHATFVSI 687

Query: 628 L 628
           L
Sbjct: 688 L 688


>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
 gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
          Length = 941

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/608 (35%), Positives = 336/608 (55%), Gaps = 19/608 (3%)

Query: 33  KQLHAFII----TSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +++HA ++    T      +  +SL      V++   +F  +  + +  +N ++  YA+ 
Sbjct: 331 RRIHALVLAGPYTQNTTVLNAAASLYAKCSRVADASRVFSSIPCKDAVSWNAIVSAYAKQ 390

Query: 89  GASHDSLKMFLG-MLRLGEYNPDNYTYPIVIKACTDLAWRKL---------GIALHGRVL 138
           G   D++  FL   +++  + PD+ T+  ++ +C+  A  K          G  +H +++
Sbjct: 391 GLFRDAI--FLSRQMQVEGFVPDDITFITILYSCSQSALLKQYGNSKSLTDGRQVHSQMI 448

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
             G D DT++GN L+ MY   G +  AR  F  + + +V SW  LIS   +N  A E L 
Sbjct: 449 SNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQRNVFSWTILISLLVQNGEASEGLE 508

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           +   M   G E +  + +S+L AC    ++ +G+ IHE +    L  +I   NAL++MY 
Sbjct: 509 LLKSMDLEGTEANKITFISLLGACSVTGDLSLGKTIHERIRTKGLESDIITSNALLNMYT 568

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
            C S++EARLVF+RM  RDVV+WT +I+ YA  G    AL L++ M+ E  RP+++T+ S
Sbjct: 569 TCESLDEARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQLYRRMEQEFSRPDAVTLIS 628

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           +L AC+SL  L  G+++H   +   +E +V V TA++  Y KC  V+ + QVF R   K 
Sbjct: 629 VLEACASLRALVEGKAIHERIVASGVETDVFVGTAVVSFYGKCEAVEDARQVFDRILDKD 688

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
            V WNA++     N    KA  L+ +M+   + PND TL +LL + +    +++  ++H 
Sbjct: 689 IVCWNAMIGAYAQNHCEEKAFALYLEMVENQMPPNDVTLITLLDSCSSTCKMERGSSLHR 748

Query: 439 YLIRYGFLSVVEVSTGLIDIYSK-CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
                G+LS   V   LI++Y+K CG+LE+A   F  +    K++V WS I+A Y  +G 
Sbjct: 749 EAAARGYLSHTSVVNALINMYAKCCGNLEAAQTAFESVA--SKNVVSWSSIVAAYARNGE 806

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
            + A +LF  M Q GV PN VTFTS LHACSH GL DEG   F  M  +H      +HY 
Sbjct: 807 EDRARNLFWTMNQDGVLPNIVTFTSVLHACSHAGLADEGWSYFLSMQGDHHLEPTPEHYG 866

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617
           C+V+LL ++GR+ +A   +  MP++P  + W +LLGAC +H + E G +AAK L + EP 
Sbjct: 867 CMVNLLAKSGRVKQAASFMSAMPVQPDASAWRSLLGACEVHTDKEYGALAAKQLLDAEPR 926

Query: 618 NPGNYVLL 625
           N   YVLL
Sbjct: 927 NSAAYVLL 934



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 160/540 (29%), Positives = 263/540 (48%), Gaps = 48/540 (8%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           D  T    + AC  L     G  +H R+L +G      + N L+ MY   G V+ AR  F
Sbjct: 9   DEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEARNAF 68

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           D M E  ++SWN +I+ Y ++   K+A+ ++ +    G +PD  +  S+L AC    +++
Sbjct: 69  DRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFASGDLK 128

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
            GRM+HE   G     +    N L+ MY  CGS+++A  VF+     DV TWT++I  Y 
Sbjct: 129 FGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDVCTWTTVIAAYT 188

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            +G +  A   +  M  EG+R N +T  ++L  CSSL  L+ G+ +H   +   L+  + 
Sbjct: 189 RHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLALGSGLDFSLR 248

Query: 350 VETALIDMYAKCNL-VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
           +E +LI MY KC+     + +VF R S+   + W+A +A     G   +A++ F  M +E
Sbjct: 249 MENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIAA---YGQHWEAIKTFELMNLE 305

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            V+PN  TL S+L A A +   +Q   IH  ++   +     V      +Y+KC  +  A
Sbjct: 306 GVKPNATTLTSVLRACATVGAHEQGRRIHALVLAGPYTQNTTVLNAAASLYAKCSRVADA 365

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            ++FS IP KD   V W+ I++ Y   G    A+ L ++M   G  P+++TF + L++CS
Sbjct: 366 SRVFSSIPCKDA--VSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCS 423

Query: 529 HGGLLDE--------------------GLD----LFNFMLENHQTCSRAD---------- 554
              LL +                    GLD    L N +++ +  C   D          
Sbjct: 424 QSALLKQYGNSKSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIH 483

Query: 555 -----HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA---VWGALLGACVIHGNVELGEV 606
                 +T ++ LL + G   E  +L+++M L+ T A    + +LLGAC + G++ LG+ 
Sbjct: 484 QRNVFSWTILISLLVQNGEASEGLELLKSMDLEGTEANKITFISLLGACSVTGDLSLGKT 543



 Score =  254 bits (649), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 184/610 (30%), Positives = 285/610 (46%), Gaps = 53/610 (8%)

Query: 33  KQLHAFIITSGPLFTHLRS-SLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQN 88
           KQ+HA I++SG   + L S SLV  YG   +V   R  FD M ER    +N ++ +YAQ+
Sbjct: 30  KQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEARNAFDRMPERDLISWNAMITVYAQH 89

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
                +++++    RL    PD  T+  ++ AC      K G  LH   L T F  D  V
Sbjct: 90  ECGKQAIQLY-AYSRLEGTKPDEVTFASLLNACFASGDLKFGRMLHEHFLGTSFVSDQIV 148

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N LI+MY + G +  A  VF+  +   V +W T+I+ Y ++   + A   +  M + G+
Sbjct: 149 CNGLISMYSDCGSLDDATAVFEWSFRPDVCTWTTVIAAYTRHGKLECAFATWSKMHQEGL 208

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS-VNEAR 267
             +  + ++VL  C  L+ +E G+ +H L  G  L  ++   N+L+ MY KC    +EAR
Sbjct: 209 RSNEITFLTVLDTCSSLEVLETGKHVHRLALGSGLDFSLRMENSLISMYGKCSRHPDEAR 268

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VF R+S   V++W++ I  Y   G    A+  F+LM  EGV+PN+ T+ S+L AC+++ 
Sbjct: 269 EVFLRISRPSVISWSAFIAAY---GQHWEAIKTFELMNLEGVKPNATTLTSVLRACATVG 325

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
             ++GR +HA  +         V  A   +YAKC+ V  + +VF+    K  V WNAI++
Sbjct: 326 AHEQGRRIHALVLAGPYTQNTTVLNAAASLYAKCSRVADASRVFSSIPCKDAVSWNAIVS 385

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATL---------NSLLPAYAILADLQQAMNIHC 438
                GL R A+ L RQM VE   P+D T          ++LL  Y     L     +H 
Sbjct: 386 AYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQSALLKQYGNSKSLTDGRQVHS 445

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
            +I  G      +   L+ +Y +CGSL+ A   F    I  +++  W+++I+    +G  
Sbjct: 446 QMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQ--GIHQRNVFSWTILISLLVQNGEA 503

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF---------------NFM 543
              + L K M   G + N++TF S L ACS  G L  G  +                N +
Sbjct: 504 SEGLELLKSMDLEGTEANKITFISLLGACSVTGDLSLGKTIHERIRTKGLESDIITSNAL 563

Query: 544 LENHQTCSRADH---------------YTCIVDLLGRAGRLDEAYDLIRTMPL---KPTH 585
           L  + TC   D                +T I+     AG   EA  L R M     +P  
Sbjct: 564 LNMYTTCESLDEARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQLYRRMEQEFSRPDA 623

Query: 586 AVWGALLGAC 595
               ++L AC
Sbjct: 624 VTLISVLEAC 633



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/425 (28%), Positives = 201/425 (47%), Gaps = 9/425 (2%)

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           GV  D  ++++ + AC  L +   G+ IH  +    LG ++   N+LV MY KCGSV EA
Sbjct: 5   GVPGDEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEA 64

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
           R  FDRM ERD+++W +MI  YA +   + A+ L+   + EG +P+ +T  SLL+AC + 
Sbjct: 65  RNAFDRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFAS 124

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             LK GR LH   +  +   + IV   LI MY+ C  +  +  VF  + +     W  ++
Sbjct: 125 GDLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVFEWSFRPDVCTWTTVI 184

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           A    +G    A   + +M  E +  N+ T  ++L   + L  L+   ++H   +  G  
Sbjct: 185 AAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLALGSGLD 244

Query: 447 SVVEVSTGLIDIYSKCGS-LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
             + +   LI +Y KC    + A ++F  + I    ++ WS  IA YG H     A+  F
Sbjct: 245 FSLRMENSLISMYGKCSRHPDEAREVF--LRISRPSVISWSAFIAAYGQHWE---AIKTF 299

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
           + M   GV+PN  T TS L AC+  G  ++G  +   +L    T            L  +
Sbjct: 300 ELMNLEGVKPNATTLTSVLRACATVGAHEQGRRIHALVLAGPYT-QNTTVLNAAASLYAK 358

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
             R+ +A  +  ++P K     W A++ A    G        ++ + ++E   P +   +
Sbjct: 359 CSRVADASRVFSSIPCKDA-VSWNAIVSAYAKQGLFRDAIFLSRQM-QVEGFVPDDITFI 416

Query: 626 SKLYS 630
           + LYS
Sbjct: 417 TILYS 421



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 151/303 (49%), Gaps = 27/303 (8%)

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M  EGV  + +T+ + +SAC++L    +G+ +HA  +   L   V++  +L+ MY KC  
Sbjct: 1   MDLEGVPGDEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGS 60

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           V+ +   F R  ++  + WNA++     +   ++A++L+    +E  +P++ T  SLL A
Sbjct: 61  VEEARNAFDRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNA 120

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
                DL+    +H + +   F+S   V  GLI +YS CGSL+ A  +F E   +  D+ 
Sbjct: 121 CFASGDLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATAVF-EWSFR-PDVC 178

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGGL 532
            W+ +IA Y  HG  E A + + +M Q G++ NE+TF + L  CS           H   
Sbjct: 179 TWTTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLA 238

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR-LDEAYDLIRTMPLKPTHAVWGAL 591
           L  GLD F+  +EN            ++ + G+  R  DEA ++   +  +P+   W A 
Sbjct: 239 LGSGLD-FSLRMENS-----------LISMYGKCSRHPDEAREVFLRIS-RPSVISWSAF 285

Query: 592 LGA 594
           + A
Sbjct: 286 IAA 288


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/616 (33%), Positives = 332/616 (53%), Gaps = 3/616 (0%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           +L   +G       +F +M       +NT++  +AQ G    +L++F  M +L    PD 
Sbjct: 187 ALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEM-QLSGLRPDC 245

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T   ++ AC  +   + G  LH  +L  G   D      L+ +Y+  G+++ A  +F+ 
Sbjct: 246 VTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNL 305

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
               +VV WN ++  Y + +   ++  +F  M  +G+ P+  +   +L  C    +IE+G
Sbjct: 306 GDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELG 365

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
             IH L        ++     L+DMY K   +++AR + + + +RDVV+WTSMI GY  +
Sbjct: 366 EQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQH 425

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
                AL  F+ MQ  GV P+++ + S  SAC+ +  +++G  +HA         ++ + 
Sbjct: 426 DFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIW 485

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
             L+++YA+C   + +F +F     K  + WN +++G   + L  +A+ +F +M     +
Sbjct: 486 NTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAK 545

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
            N  T  S + A A LAD++Q   +H   ++ G  S  EV+  LI +Y KCGS+E A  I
Sbjct: 546 YNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMI 605

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           FSE+ ++++  V W+ II     HG G  A+ LF +M Q G++PN+VTF   L ACSH G
Sbjct: 606 FSEMSLRNE--VSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVG 663

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
           L++EGL  F  M   +      DHY C+VD+LGRAG+LD A   +  MP+     +W  L
Sbjct: 664 LVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTL 723

Query: 592 LGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651
           L AC +H N+E+GE+AAK L ELEP +  +YVLLS  Y+   +W + + VR +M ++G+R
Sbjct: 724 LSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIR 783

Query: 652 KAPAHSLIEVRNILTA 667
           K P  S IEV+N + A
Sbjct: 784 KEPGRSWIEVKNAVHA 799



 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 162/570 (28%), Positives = 286/570 (50%), Gaps = 9/570 (1%)

Query: 34  QLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           ++HA  +  G     L  +L   L    G V   R +F E+S R    +  ++  YAQ G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              ++ +++   +      P  Y    V+ ACT       G  +H +V    F  +TFVG
Sbjct: 124 LGKEAFRLY-SQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG 182

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N LIA+Y+ FG  K A +VF  M     V++NTLISG+ +  + + AL +FD M  SG+ 
Sbjct: 183 NALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLR 242

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PDC +V S+L AC  + +++ G+ +H  +    +  +     +L+D+YVKCG +  A  +
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F+     +VV W  M+  Y    D+  +  +F  MQ  G+ PN  T   +L  C+    +
Sbjct: 303 FNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQI 362

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           + G  +H+ +IK   E ++ V   LIDMY+K   +  + ++     K+  V W +++AG 
Sbjct: 363 ELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGY 422

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
           V +    +A+  F++M    V P++  L S   A A +  ++Q + IH  +   G+ + +
Sbjct: 423 VQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADI 482

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            +   L+++Y++CG  E A  +F EI  KD+  + W+ +I+G+G     E A+ +F +M 
Sbjct: 483 SIWNTLVNLYARCGRSEEAFSLFREIDHKDE--ITWNGLISGFGQSRLYEQALMVFMKMS 540

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           Q+G + N  TF SA+ A ++   + +G  +    ++   T S  +    ++ L G+ G +
Sbjct: 541 QAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHT-SETEVANALISLYGKCGSI 599

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           ++A  +   M L+     W  ++ +C  HG
Sbjct: 600 EDAKMIFSEMSLR-NEVSWNTIITSCSQHG 628



 Score =  238 bits (607), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 139/507 (27%), Positives = 257/507 (50%), Gaps = 9/507 (1%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHL-RSSLVRAY---GHVSNVRILFDEMS 71
           V  L+   A+   +   KQLH++++ +G  F ++   SL+  Y   G +     +F+   
Sbjct: 248 VASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGD 307

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
             +  L+N ++  Y Q      S ++F G ++    +P+ +TYP +++ CT     +LG 
Sbjct: 308 RTNVVLWNLMLVAYGQISDLAKSFEIF-GQMQATGIHPNKFTYPCILRTCTCTGQIELGE 366

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H   +  GF+ D +V   LI MY  +  +  ARK+ + + +  VVSW ++I+GY ++ 
Sbjct: 367 QIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHD 426

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
           + +EAL  F  M   GV PD   + S   AC  +K +  G  IH  V       +I+ WN
Sbjct: 427 FCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWN 486

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            LV++Y +CG   EA  +F  +  +D +TW  +I+G+  +     AL +F  M   G + 
Sbjct: 487 TLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKY 546

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           N  T  S +SA ++L  +K+G+ +H   +K     E  V  ALI +Y KC  ++ +  +F
Sbjct: 547 NVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIF 606

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
           +  S +  V WN I+  C  +G   +A++LF QM  E ++PND T   +L A + +  ++
Sbjct: 607 SEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVE 666

Query: 432 QAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
           + ++    +   YG   + +    ++DI  + G L+ A +   E+PI   + ++W  +++
Sbjct: 667 EGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPIT-ANAMIWRTLLS 725

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNE 517
              +H + E      K +++  ++P++
Sbjct: 726 ACKVHKNIEIGELAAKHLLE--LEPHD 750



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 153/476 (32%), Positives = 237/476 (49%), Gaps = 5/476 (1%)

Query: 118 IKACTDLAWR-KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           ++AC     R  L + +H   ++ G   D  +GN LI +Y   G V  AR+VF  +    
Sbjct: 49  LQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRD 108

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
            VSW  ++SGY +    KEA  ++  M  + V P    + SVL AC   K    GRMIH 
Sbjct: 109 HVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHA 168

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            V            NAL+ +Y+  GS   A  VF  M   D VT+ ++I+G+A  G    
Sbjct: 169 QVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGEC 228

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           AL +F  MQ  G+RP+ +T+ SLL+AC+S+  L++G+ LH++ +K  +  + I E +L+D
Sbjct: 229 ALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLD 288

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           +Y KC  ++ +  +F    +   V WN +L          K+ E+F QM    + PN  T
Sbjct: 289 LYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFT 348

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
              +L        ++    IH   I+ GF S + VS  LID+YSK   L+ A KI     
Sbjct: 349 YPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILE--M 406

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           ++ +D+V W+ +IAGY  H   E A++ FKEM   GV P+ +   SA  AC+    + +G
Sbjct: 407 LEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQG 466

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           L +   +  +    +    +  +V+L  R GR +EA+ L R +  K     W  L+
Sbjct: 467 LQIHARVYVSGYA-ADISIWNTLVNLYARCGRSEEAFSLFREIDHK-DEITWNGLI 520


>gi|225445472|ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial [Vitis vinifera]
          Length = 773

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 221/636 (34%), Positives = 355/636 (55%), Gaps = 21/636 (3%)

Query: 34  QLHAFIITSGPLFTHLR--SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           Q+HAF I+SG   +H+   +SL+  Y   G      ++F+ ++      +NTV+  + + 
Sbjct: 99  QIHAFAISSG-FISHVTVPNSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGFQR- 156

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
             S D+L   L M   G    D  T   V+  C+D      G  LH R+L  G D + FV
Sbjct: 157 --SDDALNFALRMNFTG-VAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFV 213

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK-EALVVFDWMLKSG 207
           GN LI MY     +  AR+VFD M    +VSWN ++SGY +   +  EA++VF  MLK G
Sbjct: 214 GNALITMYSRCCRLVEARRVFDEMRNKDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEG 273

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           ++ D  S    + ACG+ KE E+GR IH L        ++   N L+  Y KC  + +A+
Sbjct: 274 MKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAK 333

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           LVF+ + +R+VV+WT+MI+         +A  LF  M+ +GV PN +T   L+ A +   
Sbjct: 334 LVFESIIDRNVVSWTTMISISE-----EDATSLFNEMRRDGVYPNDVTFVGLIHAITMKN 388

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            ++ G+ +H   +K +   E+ V  +LI MYAK   +  S +VF   + ++ + WN++++
Sbjct: 389 LVEEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLIS 448

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP--AYAILADLQQAMNIHCYLIRYGF 445
           G   NGL ++A++ F   L+E   PN+ T  S+L   A A    ++     H ++++ G 
Sbjct: 449 GYAQNGLWQEALQTFLSALMES-RPNEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGL 507

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
            +   VS+ L+D+Y+K GS+  +  +FSE P+K++  V W+ II+ +  HG  E  ++LF
Sbjct: 508 NTNPIVSSALLDMYAKRGSICESLGVFSETPLKNE--VAWTAIISAHARHGDYEAVMNLF 565

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
           K+M + GV+P+ +TF + + AC   G++D G  LFN M+++H      +HY+ +VD+LGR
Sbjct: 566 KDMEREGVKPDSITFLAVITACGRKGMVDTGYQLFNSMVKDHLIEPSPEHYSSMVDMLGR 625

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           AGRL EA + +  +P     +V  +LLGAC IHGNV++ +  A  L E+EP   G+YVL+
Sbjct: 626 AGRLKEAEEFVGQIPGGAGLSVLQSLLGACRIHGNVDMAKRVADDLIEMEPMGSGSYVLM 685

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           S LY+    W+    +R  M E+G+RK    S ++V
Sbjct: 686 SNLYAEKGEWEKVAKIRKGMRERGVRKEIGFSWVDV 721



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 170/615 (27%), Positives = 282/615 (45%), Gaps = 44/615 (7%)

Query: 39  IITSGPLFTHL-----RSSLVRAYGHVS-NVRILFDEMSERSSFLYNTVMKMYAQNGASH 92
           +IT  P F  L     + S+   Y H S +V    D+  + +    N  M    +   S 
Sbjct: 1   MITRHPPFKILHRVVQQRSIQFKYFHSSKHVHQPLDQSPQTTIASLNRSMLTALRRNLSL 60

Query: 93  DSLKMFLGMLRLGEY-NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNC 151
           ++L +F   L+ G   N D  T  IV+KAC   +  KLG  +H   + +GF     V N 
Sbjct: 61  EALDLFKKQLQWGFVGNIDQVTVAIVLKACCGDS--KLGCQIHAFAISSGFISHVTVPNS 118

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           L+ MY   G    A  VF+ +    +VSWNT++SG+ +   + +AL     M  +GV  D
Sbjct: 119 LMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGFQR---SDDALNFALRMNFTGVAFD 175

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFD 271
             +  +VL  C   +    G  +H  +    L   +   NAL+ MY +C  + EAR VFD
Sbjct: 176 AVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEARRVFD 235

Query: 272 RMSERDVVTWTSMINGYALNGDVR-NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
            M  +D+V+W +M++GYA  G+    A+ +F  M  EG++ + ++    +SAC      +
Sbjct: 236 EMRNKDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFE 295

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
            GR +H+  +K   +  V V   LI  Y+KC  ++ +  VF     +  V W  +++   
Sbjct: 296 LGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMISISE 355

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
            +     A  LF +M  + V PND T   L+ A  +   +++   IH   ++  FLS + 
Sbjct: 356 ED-----ATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELN 410

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           VS  LI +Y+K  S+  + K+F E+    ++I+ W+ +I+GY  +G  + A+  F   + 
Sbjct: 411 VSNSLITMYAKFESMSDSMKVFEELNY--REIISWNSLISGYAQNGLWQEALQTFLSALM 468

Query: 511 SGVQPNEVTFTSALHACS--------HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDL 562
              +PNE TF S L + +        HG        +    L  +   S A     ++D+
Sbjct: 469 ES-RPNEFTFGSVLSSIASAEAISMRHGQRCHS--HILKLGLNTNPIVSSA-----LLDM 520

Query: 563 LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF---ELEPENP 619
             + G + E+  +    PLK     W A++ A   HG+ E    A   LF   E E   P
Sbjct: 521 YAKRGSICESLGVFSETPLK-NEVAWTAIISAHARHGDYE----AVMNLFKDMEREGVKP 575

Query: 620 GNYVLLSKLYSAVRR 634
            +   L+ + +  R+
Sbjct: 576 DSITFLAVITACGRK 590


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/619 (34%), Positives = 355/619 (57%), Gaps = 10/619 (1%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFL-YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPD 110
           SL    G     R++F+ M  +   + ++ ++  +A N     ++  FL ML LG Y P+
Sbjct: 87  SLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY-PN 145

Query: 111 NYTYPIVIKACTDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMN-FGEVKAARKV 168
            Y +  VI+AC++  +  +G  ++G V+ TG+ + D  VG  LI M++   G++ +A KV
Sbjct: 146 EYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKV 205

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           FD M E ++V+W  +I+ + +   A++A+ +F  M  SG  PD  +  SVL AC  L  +
Sbjct: 206 FDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLL 265

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKC---GSVNEARLVFDRMSERDVVTWTSMI 285
            +G+ +H  V    L  ++    +LVDMY KC   GSV+++R VF++M E +V++WT++I
Sbjct: 266 ALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAII 325

Query: 286 NGYALNGDV-RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
             Y  +G+  + A+ LF  M    +RPN  +  S+L AC +L     G  ++++ +K  +
Sbjct: 326 TAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGI 385

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
                V  +LI MYA+   ++ + + F    +K  V +NAI+ G   N  + +A  LF +
Sbjct: 386 ASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE 445

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           +    +  +  T  SLL   A +  + +   IH  L++ G+ S   +   LI +YS+CG+
Sbjct: 446 IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGN 505

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           +E+A ++F+E+  +D++++ W+ +I G+  HG    A+ +F +M+++G +PNE+T+ + L
Sbjct: 506 IEAAFQVFNEM--EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVL 563

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            ACSH G++ EG   FN M + H    R +HY C+VDLLGR+G L EA + I +MPL   
Sbjct: 564 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMAD 623

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
             VW  LLGAC +HGN ELG  AA+ + E EP++P  Y+LLS L+++  +WKD   +R  
Sbjct: 624 ALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKS 683

Query: 645 MDEKGLRKAPAHSLIEVRN 663
           M E+ L K    S IEV N
Sbjct: 684 MKERNLIKEAGCSWIEVEN 702



 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 151/500 (30%), Positives = 263/500 (52%), Gaps = 15/500 (3%)

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           PD  TY I++K+C      +LG  +H +++ +G ++D+ V N LI++Y   G+ + AR +
Sbjct: 42  PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 101

Query: 169 FDAMW-EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           F+ M  +  +VSW+ ++S +  N+   +A+  F  ML+ G  P+     +V+ AC     
Sbjct: 102 FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 161

Query: 228 IEMGRMIHELVAG-GRLGKNIAAWNALVDMYVK-CGSVNEARLVFDRMSERDVVTWTSMI 285
             +G +I+  V   G L  ++     L+DM+VK  G +  A  VFD+M ER++VTWT MI
Sbjct: 162 AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI 221

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
             +A  G  R+A+ LF  M+  G  P+  T  S+LSAC+ L  L  G+ LH+  I+  L 
Sbjct: 222 TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLA 281

Query: 346 CEVIVETALIDMYAKC---NLVKLSFQVFARTSKKKTVPWNAILAGCVHNG-LARKAVEL 401
            +V V  +L+DMYAKC     V  S +VF +  +   + W AI+   V +G   ++A+EL
Sbjct: 282 LDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIEL 341

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
           F +M+   + PN  + +S+L A   L+D      ++ Y ++ G  SV  V   LI +Y++
Sbjct: 342 FCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYAR 401

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
            G +E A K F    + +K++V ++ I+ GY  +   E A  LF E+  +G+  +  TF 
Sbjct: 402 SGRMEDARKAFD--ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFA 459

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC--IVDLLGRAGRLDEAYDLIRTM 579
           S L   +  G + +G  +   +L+      +++   C  ++ +  R G ++ A+ +   M
Sbjct: 460 SLLSGAASIGAMGKGEQIHGRLLKGGY---KSNQCICNALISMYSRCGNIEAAFQVFNEM 516

Query: 580 PLKPTHAVWGALLGACVIHG 599
             +   + W +++     HG
Sbjct: 517 EDRNVIS-WTSMITGFAKHG 535



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 177/346 (51%), Gaps = 11/346 (3%)

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           A    D M +    PD  +   +L +C   +  ++G+++H  +    L  +    N L+ 
Sbjct: 28  AFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLIS 87

Query: 256 MYVKCGSVNEARLVFDRM-SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           +Y KCG    ARL+F+ M ++RD+V+W++M++ +A N     A+  F  M   G  PN  
Sbjct: 88  LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 147

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQN-LECEVIVETALIDMYAK-CNLVKLSFQVFA 372
              +++ ACS+  Y   G  ++ + +K   LE +V V   LIDM+ K    +  +++VF 
Sbjct: 148 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFD 207

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           +  ++  V W  ++      G AR A++LF  M +    P+  T +S+L A   L  L  
Sbjct: 208 KMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLAL 267

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKC---GSLESAHKIFSEIPIKDKDIVVWSVII 489
              +H  +IR G    V V   L+D+Y+KC   GS++ + K+F ++P  + +++ W+ II
Sbjct: 268 GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP--EHNVMSWTAII 325

Query: 490 AGYGMHGH-GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
             Y   G   + A+ LF +M+   ++PN  +F+S L AC  G L D
Sbjct: 326 TAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC--GNLSD 369


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/619 (34%), Positives = 355/619 (57%), Gaps = 10/619 (1%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFL-YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPD 110
           SL    G     R++F+ M  +   + ++ ++  +A N     ++  FL ML LG Y P+
Sbjct: 69  SLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFY-PN 127

Query: 111 NYTYPIVIKACTDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMN-FGEVKAARKV 168
            Y +  VI+AC++  +  +G  ++G V+ TG+ + D  VG  LI M++   G++ +A KV
Sbjct: 128 EYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKV 187

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           FD M E ++V+W  +I+ + +   A++A+ +F  M  SG  PD  +  SVL AC  L  +
Sbjct: 188 FDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLL 247

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKC---GSVNEARLVFDRMSERDVVTWTSMI 285
            +G+ +H  V    L  ++    +LVDMY KC   GSV+++R VF++M E +V++WT++I
Sbjct: 248 ALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAII 307

Query: 286 NGYALNGDV-RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
             Y  +G+  + A+ LF  M    +RPN  +  S+L AC +L     G  ++++ +K  +
Sbjct: 308 TAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGI 367

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
                V  +LI MYA+   ++ + + F    +K  V +NAI+ G   N  + +A  LF +
Sbjct: 368 ASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE 427

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           +    +  +  T  SLL   A +  + +   IH  L++ G+ S   +   LI +YS+CG+
Sbjct: 428 IADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGN 487

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           +E+A ++F+E+  +D++++ W+ +I G+  HG    A+ +F +M+++G +PNE+T+ + L
Sbjct: 488 IEAAFQVFNEM--EDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVL 545

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            ACSH G++ EG   FN M + H    R +HY C+VDLLGR+G L EA + I +MPL   
Sbjct: 546 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMAD 605

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
             VW  LLGAC +HGN ELG  AA+ + E EP++P  Y+LLS L+++  +WKD   +R  
Sbjct: 606 ALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKS 665

Query: 645 MDEKGLRKAPAHSLIEVRN 663
           M E+ L K    S IEV N
Sbjct: 666 MKERNLIKEAGCSWIEVEN 684



 Score =  235 bits (599), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 151/500 (30%), Positives = 263/500 (52%), Gaps = 15/500 (3%)

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           PD  TY I++K+C      +LG  +H +++ +G ++D+ V N LI++Y   G+ + AR +
Sbjct: 24  PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 83

Query: 169 FDAMW-EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           F+ M  +  +VSW+ ++S +  N+   +A+  F  ML+ G  P+     +V+ AC     
Sbjct: 84  FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 143

Query: 228 IEMGRMIHELVAG-GRLGKNIAAWNALVDMYVK-CGSVNEARLVFDRMSERDVVTWTSMI 285
             +G +I+  V   G L  ++     L+DM+VK  G +  A  VFD+M ER++VTWT MI
Sbjct: 144 AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI 203

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
             +A  G  R+A+ LF  M+  G  P+  T  S+LSAC+ L  L  G+ LH+  I+  L 
Sbjct: 204 TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLA 263

Query: 346 CEVIVETALIDMYAKC---NLVKLSFQVFARTSKKKTVPWNAILAGCVHNG-LARKAVEL 401
            +V V  +L+DMYAKC     V  S +VF +  +   + W AI+   V +G   ++A+EL
Sbjct: 264 LDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIEL 323

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
           F +M+   + PN  + +S+L A   L+D      ++ Y ++ G  SV  V   LI +Y++
Sbjct: 324 FCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYAR 383

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
            G +E A K F    + +K++V ++ I+ GY  +   E A  LF E+  +G+  +  TF 
Sbjct: 384 SGRMEDARKAFD--ILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFA 441

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC--IVDLLGRAGRLDEAYDLIRTM 579
           S L   +  G + +G  +   +L+      +++   C  ++ +  R G ++ A+ +   M
Sbjct: 442 SLLSGAASIGAMGKGEQIHGRLLKGGY---KSNQCICNALISMYSRCGNIEAAFQVFNEM 498

Query: 580 PLKPTHAVWGALLGACVIHG 599
             +   + W +++     HG
Sbjct: 499 EDRNVIS-WTSMITGFAKHG 517



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 177/346 (51%), Gaps = 11/346 (3%)

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           A    D M +    PD  +   +L +C   +  ++G+++H  +    L  +    N L+ 
Sbjct: 10  AFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLIS 69

Query: 256 MYVKCGSVNEARLVFDRM-SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           +Y KCG    ARL+F+ M ++RD+V+W++M++ +A N     A+  F  M   G  PN  
Sbjct: 70  LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 129

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQN-LECEVIVETALIDMYAK-CNLVKLSFQVFA 372
              +++ ACS+  Y   G  ++ + +K   LE +V V   LIDM+ K    +  +++VF 
Sbjct: 130 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFD 189

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           +  ++  V W  ++      G AR A++LF  M +    P+  T +S+L A   L  L  
Sbjct: 190 KMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLAL 249

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKC---GSLESAHKIFSEIPIKDKDIVVWSVII 489
              +H  +IR G    V V   L+D+Y+KC   GS++ + K+F ++P  + +++ W+ II
Sbjct: 250 GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP--EHNVMSWTAII 307

Query: 490 AGYGMHGH-GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
             Y   G   + A+ LF +M+   ++PN  +F+S L AC  G L D
Sbjct: 308 TAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC--GNLSD 351


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/542 (38%), Positives = 314/542 (57%), Gaps = 13/542 (2%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  LHG +L  GF  DT +GN LI MY   GE++ A +VF  M E +VVSW  L+ G+ +
Sbjct: 23  GAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMPERNVVSWTALMVGFLR 82

Query: 190 NAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNI 247
           +  A+E L +   M   S V P+  ++ + L ACG + ++  G  IH   V  G  G ++
Sbjct: 83  HGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGVWIHGACVRAGFEGHHV 142

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF- 306
            A N+LV +Y K G + +AR VFD    R++VTW +MI+GYA  G  R++L +F+ MQ  
Sbjct: 143 VA-NSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQR 201

Query: 307 ----EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE--CEVIVETALIDMYAK 360
               E  +P+  T  SLL AC SL   + G  +HA  + + +      I+  AL+DMY K
Sbjct: 202 RQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVK 261

Query: 361 CN-LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           C  L+ ++ QVF R  +K  + W  ++ G    G  ++A+ELF +     V  +   L+S
Sbjct: 262 CRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSS 321

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           ++  +A  A ++Q   +HCY ++      V V+  LID+Y KCG  + A + F E+P ++
Sbjct: 322 VVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPARN 381

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
             +V W+ +I G G HGHG+ A+ +F+EM   GV+P+EV + + L ACSH GL++E    
Sbjct: 382 --VVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEECRRY 439

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           F+ +  + +   RA+HY C+VDLLGRAG L EA DL+ TMP+ PT  VW  LL AC +H 
Sbjct: 440 FSAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVGVWQTLLSACRVHK 499

Query: 600 NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           NV +G  A + L  ++ +NP NYV+LS +++    W++ + VR  M  +GLRK    S +
Sbjct: 500 NVTVGREAGETLLAIDGDNPVNYVMLSNIFAEAGDWRECQRVRGAMRRRGLRKQGGCSWV 559

Query: 660 EV 661
           EV
Sbjct: 560 EV 561



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 135/495 (27%), Positives = 246/495 (49%), Gaps = 16/495 (3%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNVRI---LFDEM 70
           ++  +++  AA+ +I G  QLH  ++  G    T L ++L+  Y     +R+   +F  M
Sbjct: 6   MIADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGM 65

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
            ER+   +  +M  + ++G + + L++   M  L +  P+ +T    +KAC  +     G
Sbjct: 66  PERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAG 125

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           + +HG  +  GF+    V N L+ +Y   G +  AR+VFD     ++V+WN +ISGY   
Sbjct: 126 VWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHA 185

Query: 191 AYAKEALVVFDWMLKSGVE-----PDCASVVSVLPACGYLKEIEMGRMIHE--LVAGGRL 243
            + +++L+VF  M +   E     PD  +  S+L ACG L     G  +H   ++ G   
Sbjct: 186 GHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVST 245

Query: 244 GKNIAAWNALVDMYVKCGS-VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
             N     AL+DMYVKC   +  A  VF+R+ +++ + WT++I G+A  G V+ A+ LF 
Sbjct: 246 ASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFG 305

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
                GVR +   + S++   +    +++GR +H +T+K     +V V  +LIDMY KC 
Sbjct: 306 RFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCG 365

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
           L   + + F     +  V W A++ G   +G  ++A+ +F +M  E VEP++    +LL 
Sbjct: 366 LTDEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLS 425

Query: 423 AYAILADLQQAMNIHCYLIRYG--FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           A +  + L +    +   IR+        E    ++D+  + G L  A  + + +P+   
Sbjct: 426 ACS-HSGLVEECRRYFSAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVATMPMA-P 483

Query: 481 DIVVWSVIIAGYGMH 495
            + VW  +++   +H
Sbjct: 484 TVGVWQTLLSACRVH 498


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 218/617 (35%), Positives = 337/617 (54%), Gaps = 13/617 (2%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +S  R LFD++       YN +++ Y+  G +           R     P+NYT+P V
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLP-QPNNYTFPFV 135

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +KAC+ L   +   A+H      G   D FV   L+ +Y      + A  VF  M    V
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V+WN +++GY  +    + +     +++    P+ +++V++LP       +  GR +H  
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACL-LLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 238 -VAGGRLGKN---IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
            V    L  +   +    AL+DMY KCG +  A  VF+ M+ R+ VTW++++ G+ L G 
Sbjct: 255 SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGR 314

Query: 294 VRNALGLFQLMQFEGV---RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           +  A  LF+ M  +G+    P S  + S L AC++L  L  G+ LHA   K  L  ++  
Sbjct: 315 MLEAFSLFKDMLAQGLCFLSPTS--VASALRACANLSDLCLGKQLHALLAKSGLHTDLTA 372

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
             +L+ MYAK  L+  +  +F +   K TV ++A+++G V NG A +A  +FR+M    V
Sbjct: 373 GNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNV 432

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           +P+ AT+ SL+PA + LA LQ     H  +I  G  S   +   LID+Y+KCG ++ + +
Sbjct: 433 QPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQ 492

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           IF  +P +D  IV W+ +IAGYG+HG G+ A +LF +M     +P++VTF   + ACSH 
Sbjct: 493 IFDVMPARD--IVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHS 550

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           GL+ EG   F+ M   +    R +HY  +VDLL R G LDEAY  I+ MPLK    VWGA
Sbjct: 551 GLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGA 610

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LLGAC +H N++LG+  +  + +L PE  GN+VLLS ++SA  R+ +A  VR +  E+G 
Sbjct: 611 LLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGF 670

Query: 651 RKAPAHSLIEVRNILTA 667
           +K+P  S IE+   L A
Sbjct: 671 KKSPGCSWIEINGSLHA 687



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 175/352 (49%), Gaps = 18/352 (5%)

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
           CG ++ AR +FD++    +  + ++I  Y+L G          L +    +PN+ T   +
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           L ACS+L  L+  R++H    +  L  ++ V TAL+D+YAKC   + +  VF R   +  
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           V WNA+LAG   +G     +     ++ +   PN +TL +LLP  A    L Q   +H Y
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACL-LLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 440 LIRYGFL----SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
            +R   L      V V T L+D+Y+KCG L  A ++F  + ++++  V WS ++ G+ + 
Sbjct: 255 SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNE--VTWSALVGGFVLC 312

Query: 496 GHGETAVSLFKEMVQSG---VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN--HQTC 550
           G    A SLFK+M+  G   + P  V   SAL AC++   L  G  L   + ++  H   
Sbjct: 313 GRMLEAFSLFKDMLAQGLCFLSPTSV--ASALRACANLSDLCLGKQLHALLAKSGLHTDL 370

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           +  +    ++ +  +AG +D+A  L   M +K T   + AL+   V +G  +
Sbjct: 371 TAGNS---LLSMYAKAGLIDQATTLFDQMVVKDT-VSYSALVSGYVQNGKAD 418



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 134/269 (49%), Gaps = 9/269 (3%)

Query: 33  KQLHAFIITSGPLFTHLRS--SLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           KQLHA +  SG L T L +  SL+  Y   G +     LFD+M  + +  Y+ ++  Y Q
Sbjct: 355 KQLHALLAKSG-LHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQ 413

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NG + ++ ++F  M +     PD  T   +I AC+ LA  + G   HG V++ G   +T 
Sbjct: 414 NGKADEAFRVFRKM-QACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETS 472

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           + N LI MY   G +  +R++FD M    +VSWNT+I+GY  +   KEA  +F  M    
Sbjct: 473 ICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQA 532

Query: 208 VEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
            EPD  + + ++ AC +   +  G R  H +     +   +  +  +VD+  + G ++EA
Sbjct: 533 CEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEA 592

Query: 267 RLVFDRMS-ERDVVTWTSMINGYALNGDV 294
                 M  + DV  W +++    ++ ++
Sbjct: 593 YQFIQGMPLKADVRVWGALLGACRVHKNI 621


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/589 (34%), Positives = 316/589 (53%), Gaps = 40/589 (6%)

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDM-DTFVGNCLIAMYMNFGEVKAAR 166
           NP+ + Y  +I A     + KLG   + R +       ++F  N +++ Y   G++   +
Sbjct: 37  NPETFLYNNLINA-----YSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSGDLSTMQ 91

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV-EPDCASVVSVLPACGYL 225
           ++F  M     VSWN+LISGY       EA+  ++ M+K GV   +  +  ++L      
Sbjct: 92  EIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQ 151

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR------------- 272
             +++GR IH  +     G  +   ++LVDMY K G V+ A  VFD              
Sbjct: 152 GCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMI 211

Query: 273 ------------------MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
                             M ERD ++WT+MI G   NG    A+ LF+ M+ EG+  +  
Sbjct: 212 TGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQY 271

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T GS+L+AC  L  LK G+ +H   I+      V V +AL+DMY KC  V+ +  VF R 
Sbjct: 272 TFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRM 331

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
           + K  V W A+L G   NG + +AV +F  M    +EP+D TL S++ + A LA L++  
Sbjct: 332 ANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGA 391

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
             HC  +  G +S + VS  LI +Y KCGS+E ++++F E+  +D+  V W+ +++GY  
Sbjct: 392 QFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDE--VSWTALVSGYAQ 449

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
            G     + LF+ M+  G++P+ VTF + L ACS  GL++ G   F  ML++H     +D
Sbjct: 450 FGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSD 509

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HYTC++DL GRAGRL+EA + I  MP  P    W  LL +C ++GN E+G+ AA+ L EL
Sbjct: 510 HYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLEL 569

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +P+NP  Y+LLS +Y+A  +W +   +R  M EKG RK P  S I+ ++
Sbjct: 570 DPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKS 618



 Score =  238 bits (608), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 157/542 (28%), Positives = 267/542 (49%), Gaps = 70/542 (12%)

Query: 26  TKSIAGTKQLHAFIITS--GPLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNT 80
           T++    K+LH  II S   P  T L ++L+ AY  + N+   R +FD+M + +SF +NT
Sbjct: 18  TRNQTQAKKLHCLIIKSLTNPE-TFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNT 76

Query: 81  VMKMYAQ-----------------NGASHDSL--------------KMFLGMLRLGEYNP 109
           ++  Y++                 +G S +SL              K +  M++ G  N 
Sbjct: 77  MLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNL 136

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           +  T+  ++   +      LG  +HG+++  GF    FVG+ L+ MY   G V  A +VF
Sbjct: 137 NRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVF 196

Query: 170 DAMWEHSVV-------------------------------SWNTLISGYFKNAYAKEALV 198
           D + E +VV                               SW T+I+G  +N    EA+ 
Sbjct: 197 DEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMD 256

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           +F  M + G+  D  +  SVL ACG L+ ++ G+ IH L+       N+   +ALVDMY 
Sbjct: 257 LFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYC 316

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           KC SV  A  VF RM+ ++VV+WT+M+ GY  NG    A+ +F  MQ  G+ P+  T+GS
Sbjct: 317 KCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGS 376

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           ++S+C++L  L+ G   H   +   L   + V  ALI +Y KC  ++ S Q+F   S + 
Sbjct: 377 VISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRD 436

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN-IH 437
            V W A+++G    G A + ++LF +MLV+ ++P+  T  ++L A +    +++      
Sbjct: 437 EVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFE 496

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
             L  +G +   +  T +ID++ + G LE A    +++P    D + W+ +++   ++G+
Sbjct: 497 SMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFS-PDSIGWATLLSSCRLYGN 555

Query: 498 GE 499
            E
Sbjct: 556 EE 557


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/523 (36%), Positives = 303/523 (57%), Gaps = 4/523 (0%)

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           GF  D  + N LI MY   G +  A  VFD M + +VVSW  L+ G+ +N    E+L++F
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
             M  SGV+P+  +  + L ACG L  +++GR IH++             N+++DMY KC
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKC 121

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           G +NEA  +F+ M  R++++W +MI GY + G    AL LFQ MQ  G   +  T  S L
Sbjct: 122 GRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTL 181

Query: 321 SACSSLYYLKRGRSLHAWTIKQNL--ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
            ACS L  +K G  +HA+ I           V  ALID+Y KC  + ++ +VF+   +K 
Sbjct: 182 KACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKH 241

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
            + W A++ G    G   +++ELFRQ+    ++ +   L+S++  +A  A +QQ   +H 
Sbjct: 242 VISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHA 301

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           + I+      + V   ++D+Y KCG +  A ++FSE+P ++  ++ W+V+I GYG HG G
Sbjct: 302 FAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARN--VISWTVMITGYGKHGLG 359

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
           + A+ LF EM     +P++VT+ + L  CSH GL+++G + F+ +   H   +R +HY C
Sbjct: 360 KEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYAC 419

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
           +VDLLGRAGRL EA +L+ +MPL+    +W  LL AC +HG++ELG+     L  L+ EN
Sbjct: 420 MVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSEN 479

Query: 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           P NYV++S +Y+    WK+ E +R+++  K L+K    S +E+
Sbjct: 480 PVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEI 522



 Score =  223 bits (567), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 131/457 (28%), Positives = 243/457 (53%), Gaps = 8/457 (1%)

Query: 49  LRSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           L + L+  YG    + +   +FD M +R+   +  +M  + QNG   +SL +F  M  L 
Sbjct: 9   LSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKM-GLS 67

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
              P+++T+   +KAC  L    +G  +H   + TGFDM   VGN +I MY   G +  A
Sbjct: 68  GVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEA 127

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
             +F+ M   +++SWN +I+GY    + ++ALV+F  M + G   D  +  S L AC  L
Sbjct: 128 ACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDL 187

Query: 226 KEIEMGRMIHE-LVAGGRL-GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
             I+ G  IH  L+ GG L   N A   AL+D+YVKCG +  AR VF  + E+ V++WT+
Sbjct: 188 GAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTA 247

Query: 284 MINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN 343
           +I GYA  G++  ++ LF+ ++   ++ +   + S++   +    +++G+ +HA+ IK  
Sbjct: 248 LILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVP 307

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
              ++ V  +++DMY KC ++  + ++F+    +  + W  ++ G   +GL ++A+ LF 
Sbjct: 308 SGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFD 367

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY-GFLSVVEVSTGLIDIYSKC 462
           +M ++  EP+D T  ++L   +    +++       L  Y G  + VE    ++D+  + 
Sbjct: 368 EMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRA 427

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           G L+ A  +   +P+ + ++ +W  +++   +HG  E
Sbjct: 428 GRLKEAKNLVDSMPL-EANVGIWQTLLSACRVHGDLE 463



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 134/275 (48%), Gaps = 9/275 (3%)

Query: 28  SIAGTKQLHAFIITSGPLF---THLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTV 81
           +I    Q+HAF+IT G L+   T +  +L+  Y   G +   R +F  + E+    +  +
Sbjct: 189 AIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTAL 248

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           +  YAQ G   +S+++F   LR      D +    ++    D A  + G  +H   +   
Sbjct: 249 ILGYAQEGNLAESMELFR-QLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVP 307

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
             +D  V N ++ MY+  G +  A ++F  M   +V+SW  +I+GY K+   KEA+ +FD
Sbjct: 308 SGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFD 367

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGR-MIHELVAGGRLGKNIAAWNALVDMYVKC 260
            M     EPD  + ++VL  C +   +E G+     L +   +   +  +  +VD+  + 
Sbjct: 368 EMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRA 427

Query: 261 GSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDV 294
           G + EA+ + D M  E +V  W ++++   ++GD+
Sbjct: 428 GRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDL 462


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/594 (33%), Positives = 336/594 (56%), Gaps = 7/594 (1%)

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           F  M  R+   + T++  + Q   S  +   F  M ++GE   +NYT   V+ ACT+   
Sbjct: 306 FLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGE-KINNYTITSVLTACTEPVM 364

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE-HSVVSWNTLIS 185
            K  + LH  +  TGF +D+ V + LI MY   G V  + +VF  M    ++  W  +IS
Sbjct: 365 IKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMIS 424

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
            + ++     A+ +F  ML+ G+ PD     SVL     +  + +GR+IH  +    L  
Sbjct: 425 AFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVL---SIIDSLSLGRLIHCYILKIGLFT 481

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           +I+  ++L  MY KCGS+ E+  VF++M ++D V+W SMI G++ +     A+ LF+ M 
Sbjct: 482 DISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREML 541

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            E +RP+ +T+ + L+ACS+L+ L++G+ +H + ++  +  EV+V  AL++MY+KC  + 
Sbjct: 542 LEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIV 601

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
           L+ +VF    +K     +++++G   NG    A+ LF ++ +  +  +  T++S++ A A
Sbjct: 602 LARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVA 661

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
           IL  L     +H  + + G  + V V + L+ +YSKCGS++  HK+F +I  +  D++ W
Sbjct: 662 ILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQI--EKPDLISW 719

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I  Y  HG G  A+ ++  M + G +P+ VTF   L ACSH G+++EG    N M +
Sbjct: 720 TAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAK 779

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
            +       HY C+VDLLGR+GRL EA   I  MP++P   +WG LL AC +HG++ELG 
Sbjct: 780 EYGIEPGYYHYACMVDLLGRSGRLKEAERFINNMPIEPDALLWGILLAACKVHGDIELGR 839

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           +AAK + ELEP   G YV LS + + +  W+D   +R +M+  G++K P  S +
Sbjct: 840 LAAKRVIELEPCEAGAYVTLSNICADMGWWEDVMKIRSLMEGTGVKKEPGWSSV 893



 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 171/524 (32%), Positives = 282/524 (53%), Gaps = 14/524 (2%)

Query: 28  SIAGTKQLHAFIITSGPLF--THLRSSLVRAYGHVSNVRI----LFDEMSERSSFLYNTV 81
           ++  TK LHA  + +  L   T + +SL+  Y   SN  +    LFD+    +   +N +
Sbjct: 60  TLRNTKILHAHFLKTAILQSNTFMTNSLMGWYCK-SNSMVHALRLFDKTPHPNVISWNIL 118

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           +    QN +  DS + F  M R   ++P+ +TY  V+ ACT L     G  ++   L  G
Sbjct: 119 ISGCNQNFSFEDSWRNFCKM-RFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNG 177

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
           F  + +V   +I ++      + A +VF  +   +VV WN +ISG  KN     AL +F 
Sbjct: 178 FFSNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFC 237

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
            M      P+  +  S+L AC  L+E+E GR +   V     G+++    A++D+Y KC 
Sbjct: 238 QMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCR 297

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
            +++A   F RM  R+VV+WT++I+G+    D  +A   F+ M+  G + N+ TI S+L+
Sbjct: 298 DMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLT 357

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR-TSKKKTV 380
           AC+    +K    LH+W  K     +  V +ALI+MY+K  +V LS +VF    S K   
Sbjct: 358 ACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLA 417

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            W  +++    +G   +AVELF++ML E + P+    +S+L   +I+  L     IHCY+
Sbjct: 418 MWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVL---SIIDSLSLGRLIHCYI 474

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           ++ G  + + V + L  +YSKCGSLE ++ +F ++P  DKD V W+ +I G+  H H E 
Sbjct: 475 LKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMP--DKDNVSWASMITGFSEHDHAEQ 532

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           AV LF+EM+   ++P+++T T+AL ACS    L++G ++  + L
Sbjct: 533 AVQLFREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYAL 576



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 139/517 (26%), Positives = 272/517 (52%), Gaps = 14/517 (2%)

Query: 34  QLHAFIITSG-PLFTHLRSSLVRAYGHVSNVRI---LFDEM-SERSSFLYNTVMKMYAQN 88
           QLH++I  +G  L +++ S+L+  Y  +  V +   +F EM S ++  ++  ++  +AQ+
Sbjct: 370 QLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQS 429

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G++  ++++F  ML+ G   PD +    V+     L+   LG  +H  +L  G   D  V
Sbjct: 430 GSTGRAVELFQRMLQEG-LRPDKFCSSSVLSIIDSLS---LGRLIHCYILKIGLFTDISV 485

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           G+ L  MY   G ++ +  VF+ M +   VSW ++I+G+ ++ +A++A+ +F  ML   +
Sbjct: 486 GSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEI 545

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            PD  ++ + L AC  L  +E G+ +H      R+GK +    ALV+MY KCG++  AR 
Sbjct: 546 RPDQMTLTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARR 605

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VFD + ++D  + +S+++GYA NG + +AL LF  ++   +  +S T+ S++ A + L  
Sbjct: 606 VFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNS 665

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L  G  LHA   K  L  EV V ++L+ MY+KC  +    +VF +  K   + W A++  
Sbjct: 666 LDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVS 725

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN-IHCYLIRYGFLS 447
              +G   +A++++  M  E  +P+  T   +L A +    +++  + ++     YG   
Sbjct: 726 YAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEP 785

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
                  ++D+  + G L+ A +  + +PI + D ++W +++A   +HG  E      K 
Sbjct: 786 GYYHYACMVDLLGRSGRLKEAERFINNMPI-EPDALLWGILLAACKVHGDIELGRLAAKR 844

Query: 508 MVQSGVQPNEV-TFTSALHACSHGGLLDEGLDLFNFM 543
           +++  ++P E   + +  + C+  G  ++ + + + M
Sbjct: 845 VIE--LEPCEAGAYVTLSNICADMGWWEDVMKIRSLM 879



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 136/474 (28%), Positives = 232/474 (48%), Gaps = 13/474 (2%)

Query: 133 LHGRVLITG-FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
           LH   L T     +TF+ N L+  Y     +  A ++FD     +V+SWN LISG  +N 
Sbjct: 67  LHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNF 126

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
             +++   F  M  SG +P+  +  SVL AC  L     G +++ L        N     
Sbjct: 127 SFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRA 186

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            ++D++ K  S  +A  VF  +   +VV W ++I+G   N +   AL LF  M      P
Sbjct: 187 GMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMP 246

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           NS T  S+L+AC++L  L+ GR +  W IK     +V V TA+ID+YAKC  +  + + F
Sbjct: 247 NSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEF 306

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
            R   +  V W  I++G V    +  A   F++M     + N+ T+ S+L A      ++
Sbjct: 307 LRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIK 366

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           +A+ +H ++ + GF     VS+ LI++YSK G ++ + ++F E+    K++ +W+V+I+ 
Sbjct: 367 EAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREME-STKNLAMWAVMISA 425

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL---HACSHGGLLDEGLDLFNFMLENHQ 548
           +   G    AV LF+ M+Q G++P++   +S L    + S G L+   +       +   
Sbjct: 426 FAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLSIIDSLSLGRLIHCYILKIGLFTDISV 485

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
             S    Y+       + G L+E+Y +   MP K  +  W +++     H + E
Sbjct: 486 GSSLFTMYS-------KCGSLEESYTVFEQMPDKD-NVSWASMITGFSEHDHAE 531


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/598 (34%), Positives = 322/598 (53%), Gaps = 3/598 (0%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F EM ER+   ++ V+  Y QN    + LK+F  ML++G       TY  V ++C  L+
Sbjct: 195 IFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVG-MGVSQSTYASVFRSCAGLS 253

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             KLG  LHG  L + F  D+ +G   + MY     +  A KVF+ +      S+N +I 
Sbjct: 254 AFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIV 313

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY +     +AL +F  + ++ +  D  S+   L AC  +K    G  +H L     LG 
Sbjct: 314 GYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGF 373

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           NI   N ++DMY KCG++ EA  +FD M  RD V+W ++I  +  N ++   L LF  M 
Sbjct: 374 NICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSML 433

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
              + P+  T GS++ AC+    L  G  +H   +K  +  +  V +AL+DMY KC ++ 
Sbjct: 434 RSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLM 493

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + ++  R  +K TV WN+I++G      +  A   F QML   V P++ T  ++L   A
Sbjct: 494 EAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCA 553

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            +A ++    IH  +++    S V +++ L+D+YSKCG+++ +  +F + P   +D V W
Sbjct: 554 NMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTP--KRDYVTW 611

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           S +I  Y  HGHGE A+ LF+EM    V+PN   F S L AC+H G +D+GL  F  M  
Sbjct: 612 SAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQIMQS 671

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
           ++      +HY+C+VDLLGR+ +++EA  LI +M  +    +W  LL  C + GNVE+ E
Sbjct: 672 HYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCKMQGNVEVAE 731

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            A   L +L+P++   YVLL+ +Y+ V  W +   +R +M    L+K P  S IEVR+
Sbjct: 732 KAFNSLLQLDPQDSSAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGCSWIEVRD 789



 Score =  248 bits (634), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 164/586 (27%), Positives = 289/586 (49%), Gaps = 19/586 (3%)

Query: 51  SSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++++  Y  + N+   + LFD M ER    +N+++  Y  NG +  S+++F+ M  L   
Sbjct: 76  NTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLK-- 133

Query: 108 NPDNY-TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR 166
            P +Y T+ +V+KAC+ +    LG+ +H   +  GF+ D   G+ L+ MY    ++  A 
Sbjct: 134 IPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAF 193

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           ++F  M E ++V W+ +I+GY +N    E L +F  MLK G+    ++  SV  +C  L 
Sbjct: 194 RIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLS 253

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
             ++G  +H          +     A +DMY KC  +++A  VF+ +      ++ ++I 
Sbjct: 254 AFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIV 313

Query: 287 GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346
           GYA       AL +FQ +Q   +  + +++   L+ACS +     G  LH   +K  L  
Sbjct: 314 GYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGF 373

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
            + V   ++DMY KC  +  +  +F    ++  V WNAI+A    N    K + LF  ML
Sbjct: 374 NICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSML 433

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
              +EP+D T  S++ A A    L   M IH  +++ G      V + L+D+Y KCG L 
Sbjct: 434 RSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLM 493

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
            A KI     +++K  V W+ II+G+      E A   F +M++ GV P+  T+ + L  
Sbjct: 494 EAEKIHDR--LEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDV 551

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
           C++   ++ G  +   +L+ +     +D Y  + +VD+  + G + ++  +    P K  
Sbjct: 552 CANMATIELGKQIHAQILKLNL---HSDVYIASTLVDMYSKCGNMQDSRLMFEKTP-KRD 607

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLLSKL 628
           +  W A++ A   HG+   GE A K   E++  N  P + + +S L
Sbjct: 608 YVTWSAMICAYAYHGH---GEQAIKLFEEMQLLNVKPNHTIFISVL 650



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 138/521 (26%), Positives = 256/521 (49%), Gaps = 40/521 (7%)

Query: 108 NP-DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMY-----MNF-- 159
           NP   +T+  +++ C++L     G   H ++++T F    +V NCL+  Y     MN+  
Sbjct: 2   NPTKKFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAF 61

Query: 160 ------------------------GEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
                                   G +  A+ +FD M E  VVSWN+L+S Y  N   ++
Sbjct: 62  KVFDRMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRK 121

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           ++ +F  M    +  D A+   VL AC  +++  +G  +H L        ++   +ALVD
Sbjct: 122 SIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVD 181

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           MY KC  ++ A  +F  M ER++V W+++I GY  N      L LF+ M   G+  +  T
Sbjct: 182 MYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQST 241

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
             S+  +C+ L   K G  LH   +K +   + I+ TA +DMYAKC+ +  +++VF    
Sbjct: 242 YASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLP 301

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
                 +NAI+ G        KA+E+F+ +    +  ++ +L+  L A +++    + + 
Sbjct: 302 NPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQ 361

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           +H   ++ G    + V+  ++D+Y KCG+L  A  IF +  ++ +D V W+ IIA +  +
Sbjct: 362 LHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDD--MERRDAVSWNAIIAAHEQN 419

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
                 +SLF  M++S ++P++ T+ S + AC+    L+ G+++   ++++       D 
Sbjct: 420 EEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMG---LDW 476

Query: 556 Y--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           +  + +VD+ G+ G L EA  +   +  K T   W +++  
Sbjct: 477 FVGSALVDMYGKCGMLMEAEKIHDRLEEKTT-VSWNSIISG 516


>gi|357120534|ref|XP_003561982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 989

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/612 (33%), Positives = 345/612 (56%), Gaps = 9/612 (1%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           S+LV  Y   G + + + LFD  +E+++ L+N+++  Y  N   + +L  F  M ++   
Sbjct: 381 SALVSMYSKLGELDSAKHLFDSCTEKNNLLWNSIISGYLVNNEWNMALDTFCKM-QIENV 439

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PD  T   VI  C  +   ++  ++H   +   F+++  V N L+AMY + GE+ ++ K
Sbjct: 440 APDATTVIKVIYGCRHIKDLRMAKSIHAYAVRNRFELNQSVMNALLAMYGDCGELSSSYK 499

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F  M    ++SWNT+ISGY +    + ++ +F  M + G++ D  +++ ++ +    ++
Sbjct: 500 LFQKMEVRMLISWNTIISGYAEIRDLEASVKLFFQMRQEGLQFDVVTLIGLISSISVAED 559

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
             +G  +H L        +I+  N L+ MY  CGSV   + +FD +S R+ V++  ++ G
Sbjct: 560 TTVGESLHSLAVKSGCNMDISLTNTLITMYSNCGSVEACQRLFDNLSSRNTVSYNVLMTG 619

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y  N      L LF+ M      PN +T+ +LL  C +    ++G+S+H + I+     E
Sbjct: 620 YRKNNLSEEILPLFRQMVKNEQEPNHITVLNLLPVCQNH---QQGKSVHCYAIRNFSTLE 676

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
               T+ I MY++ N V  S ++F    ++  + WNAIL+ CV   LA  A + FRQM  
Sbjct: 677 TSFFTSAICMYSRFNNVDYSCKLFNSVGERNIIVWNAILSACVQCKLADTAFDFFRQMHF 736

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
             ++P++ T+ SL+ A A L +      +   +++ GF   + V   LID++S+CGSL  
Sbjct: 737 LNMKPDEVTMMSLVSACAQLGNSDLGECVTALILQKGFGGTLLVVNALIDMHSRCGSLSF 796

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A ++F    +KD   V WS +I  Y MHG  E+A+++F  M+ SGV+P+++TF   L AC
Sbjct: 797 ARELFDSSVVKDS--VTWSAMINSYSMHGDCESALAIFSMMIDSGVKPDDITFVIILSAC 854

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           SH G +++   LF  +  +H    R +HY C+VDLLGR+G LDEAYD++R+M  +P+ ++
Sbjct: 855 SHSGFVEQARALFKSLQIDHGITPRMEHYACMVDLLGRSGHLDEAYDVVRSMSFRPSESL 914

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
             +LLGAC  HGN ++GE     L + +  NP +YV+LS +Y++V +W D E +R  M+ 
Sbjct: 915 LESLLGACRFHGNSKIGEAVGNLLIDSQHGNPRSYVMLSNIYASVGKWNDYEWLRVDMEA 974

Query: 648 KGLRKAPAHSLI 659
           KGLRK    SL+
Sbjct: 975 KGLRKDAGVSLV 986



 Score =  236 bits (601), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 160/559 (28%), Positives = 282/559 (50%), Gaps = 40/559 (7%)

Query: 4   PSHHTLPK---TTHLVIKLVQQYA-----------------------ATKSIAGTKQLHA 37
           P H TLPK   T + + K  Q  A                       AT+S+    +LHA
Sbjct: 3   PRHKTLPKSFETPNFLSKSKQALAKSFASLTPPRALPHPDAFPEFLHATRSLKCLSKLHA 62

Query: 38  FIITSGPLF--THLRSSLVRAY---GHVSNVRILFDEMSERSSFLY--NTVMKMYAQNGA 90
            +  +G +   T + +++V  Y   G  ++   +F     R   +Y  N  ++ ++ +G 
Sbjct: 63  LLAVAGAIARDTSVVTAVVDRYLSFGRPASAASVFAGAYRRRPTVYSLNLAVRCFSDHGF 122

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             + L ++  +   G    DN+T+P VIKAC  ++   LG  +H RVL TG + +  V  
Sbjct: 123 HRELLDLYRTLCTFGS---DNFTFPPVIKACAAVSCLPLGREMHCRVLRTGHEGNVGVQT 179

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            L+ MY   G + A+R VFD M +  ++SWN +ISGY  N   +EA+     M + G+  
Sbjct: 180 ALLDMYAKAGWIGASRTVFDFMGQKDLISWNAMISGYSLNGSLREAVEATQEMQQDGMRA 239

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHEL-VAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           + +++V +  ACG   + + G  +H   +  G LG    A  AL+ +Y     ++ +R++
Sbjct: 240 NASTLVCIAGACGAAGDSDAGGSLHAFALKCGVLGDESLA-PALISLYAALDDLSSSRVL 298

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           FD    +D+V++ SMI+ Y  +G  + +  +F+ M   G+ PN +T+ S+L  CS  + +
Sbjct: 299 FDLQHVKDLVSYNSMISAYMQHGKWKESFDVFRQMHCAGLGPNLVTVISVLPTCSDFFGV 358

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
             G S+H   IK  L  ++ V +AL+ MY+K   +  +  +F   ++K  + WN+I++G 
Sbjct: 359 NLGDSVHGMVIKFGLAEQISVVSALVSMYSKLGELDSAKHLFDSCTEKNNLLWNSIISGY 418

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
           + N     A++ F +M +E V P+  T+  ++     + DL+ A +IH Y +R  F    
Sbjct: 419 LVNNEWNMALDTFCKMQIENVAPDATTVIKVIYGCRHIKDLRMAKSIHAYAVRNRFELNQ 478

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            V   L+ +Y  CG L S++K+F ++ +  + ++ W+ II+GY      E +V LF +M 
Sbjct: 479 SVMNALLAMYGDCGELSSSYKLFQKMEV--RMLISWNTIISGYAEIRDLEASVKLFFQMR 536

Query: 510 QSGVQPNEVTFTSALHACS 528
           Q G+Q + VT    + + S
Sbjct: 537 QEGLQFDVVTLIGLISSIS 555



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 164/650 (25%), Positives = 306/650 (47%), Gaps = 54/650 (8%)

Query: 3   GPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---G 58
           G  + T P        +++  AA   +   +++H  ++ +G      ++++L+  Y   G
Sbjct: 137 GSDNFTFPP-------VIKACAAVSCLPLGREMHCRVLRTGHEGNVGVQTALLDMYAKAG 189

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
            +   R +FD M ++    +N ++  Y+ NG+  ++++    M + G    +  T   + 
Sbjct: 190 WIGASRTVFDFMGQKDLISWNAMISGYSLNGSLREAVEATQEMQQDG-MRANASTLVCIA 248

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
            AC        G +LH   L  G   D  +   LI++Y    ++ ++R +FD      +V
Sbjct: 249 GACGAAGDSDAGGSLHAFALKCGVLGDESLAPALISLYAALDDLSSSRVLFDLQHVKDLV 308

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           S+N++IS Y ++   KE+  VF  M  +G+ P+  +V+SVLP C     + +G  +H +V
Sbjct: 309 SYNSMISAYMQHGKWKESFDVFRQMHCAGLGPNLVTVISVLPTCSDFFGVNLGDSVHGMV 368

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               L + I+  +ALV MY K G ++ A+ +FD  +E++ + W S+I+GY +N +   AL
Sbjct: 369 IKFGLAEQISVVSALVSMYSKLGELDSAKHLFDSCTEKNNLLWNSIISGYLVNNEWNMAL 428

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
             F  MQ E V P++ T+  ++  C  +  L+  +S+HA+ ++   E    V  AL+ MY
Sbjct: 429 DTFCKMQIENVAPDATTVIKVIYGCRHIKDLRMAKSIHAYAVRNRFELNQSVMNALLAMY 488

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
             C  +  S+++F +   +  + WN I++G         +V+LF QM  E ++ +  TL 
Sbjct: 489 GDCGELSSSYKLFQKMEVRMLISWNTIISGYAEIRDLEASVKLFFQMRQEGLQFDVVTLI 548

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
            L+ + ++  D     ++H   ++ G    + ++  LI +YS CGS+E+  ++F    + 
Sbjct: 549 GLISSISVAEDTTVGESLHSLAVKSGCNMDISLTNTLITMYSNCGSVEACQRLFDN--LS 606

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT------------------- 519
            ++ V ++V++ GY  +   E  + LF++MV++  +PN +T                   
Sbjct: 607 SRNTVSYNVLMTGYRKNNLSEEILPLFRQMVKNEQEPNHITVLNLLPVCQNHQQGKSVHC 666

Query: 520 -------------FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
                        FTSA+   S    +D    LFN + E +     A    C+   L   
Sbjct: 667 YAIRNFSTLETSFFTSAICMYSRFNNVDYSCKLFNSVGERNIIVWNAILSACVQCKLA-- 724

Query: 567 GRLDEAYDLIRTM---PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
              D A+D  R M    +KP      +L+ AC   GN +LGE     + +
Sbjct: 725 ---DTAFDFFRQMHFLNMKPDEVTMMSLVSACAQLGNSDLGECVTALILQ 771


>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Glycine max]
          Length = 755

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/639 (33%), Positives = 353/639 (55%), Gaps = 14/639 (2%)

Query: 35  LHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           LH  I+ SG  L  ++ SSL+  Y   G     R +FD M ER+   + T++  Y++ G 
Sbjct: 83  LHQRILVSGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGR 142

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             ++  +F  M R G   P + T   ++   ++LA  +    LHG  ++ GF  D  + N
Sbjct: 143 VPEAFSLFDEMRRQG-IQPSSVTVLSLLFGVSELAHVQ---CLHGCAILYGFMSDINLSN 198

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            ++ +Y   G ++ +RK+FD M    +VSWN+LIS Y +     E L++   M   G E 
Sbjct: 199 SMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEA 258

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHE--LVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
              +  SVL       E+++GR +H   L AG  L  ++    +L+ +Y+K G ++ A  
Sbjct: 259 GPQTFGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVET--SLIVVYLKGGKIDIAFR 316

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +F+R S++DVV WT+MI+G   NG    AL +F+ M   GV+P++ T+ S+++AC+ L  
Sbjct: 317 MFERSSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGS 376

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
              G S+  + ++Q L  +V  + +L+ MYAKC  +  S  VF   +++  V WNA++ G
Sbjct: 377 YNLGTSILGYILRQELPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTG 436

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
              NG   +A+ LF +M  +   P+  T+ SLL   A    L     IH ++IR G    
Sbjct: 437 YAQNGYVCEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPC 496

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           + V T L+D+Y KCG L++A + F+++P    D+V WS II GYG HG GE A+  + + 
Sbjct: 497 ILVDTSLVDMYCKCGDLDTAQRCFNQMP--SHDLVSWSAIIVGYGYHGKGEAALRFYSKF 554

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
           ++SG++PN V F S L +CSH GL+++GL+++  M ++       +H+ C+VDLL RAGR
Sbjct: 555 LESGMKPNHVIFLSVLSSCSHNGLVEQGLNIYESMTKDFGIAPDLEHHACVVDLLSRAGR 614

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           ++EAY++ +     P   V G +L AC  +GN ELG+  A  +  L P + GN+V L+  
Sbjct: 615 VEEAYNVYKKKFPDPVLDVLGIILDACRANGNNELGDTIANDILMLRPMDAGNFVQLAHC 674

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           Y+++ +W++       M   GL+K P  S I++   +T 
Sbjct: 675 YASINKWEEVGEAWTYMRSLGLKKIPGWSFIDIHGTITT 713



 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 181/557 (32%), Positives = 290/557 (52%), Gaps = 19/557 (3%)

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
           N  +  ++  GA H  L  +  ML+      D YT+P ++KAC+ L    LG+ LH R+L
Sbjct: 30  NATINHHSTQGAHHQVLATYASMLKT-HVPSDAYTFPSLLKACSFLNLFSLGLTLHQRIL 88

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
           ++G  +D ++ + LI  Y  FG    ARKVFD M E +VV W T+I  Y +     EA  
Sbjct: 89  VSGLSLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFS 148

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           +FD M + G++P   +V+S+L     L  ++    +H          +I   N+++++Y 
Sbjct: 149 LFDEMRRQGIQPSSVTVLSLLFGVSELAHVQ---CLHGCAILYGFMSDINLSNSMLNVYG 205

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           KCG++  +R +FD M  RD+V+W S+I+ YA  G++   L L + M+ +G      T GS
Sbjct: 206 KCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQTFGS 265

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           +LS  +S   LK GR LH   ++     +  VET+LI +Y K   + ++F++F R+S K 
Sbjct: 266 VLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKD 325

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
            V W A+++G V NG A KA+ +FRQML   V+P+ AT+ S++ A A L       +I  
Sbjct: 326 VVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILG 385

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           Y++R      V     L+ +Y+KCG L+ +  +F    +  +D+V W+ ++ GY  +G+ 
Sbjct: 386 YILRQELPLDVATQNSLVTMYAKCGHLDQSSIVFDM--MNRRDLVSWNAMVTGYAQNGYV 443

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH-QTCSRADHYT 557
             A+ LF EM      P+ +T  S L  C+  G L  G  + +F++ N  + C   D  T
Sbjct: 444 CEALFLFNEMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVD--T 501

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAV--WGALLGACVIHGNVELGEVAAKWL--FE 613
            +VD+  + G LD A      M   P+H +  W A++     HG    GE A ++   F 
Sbjct: 502 SLVDMYCKCGDLDTAQRCFNQM---PSHDLVSWSAIIVGYGYHGK---GEAALRFYSKFL 555

Query: 614 LEPENPGNYVLLSKLYS 630
                P + + LS L S
Sbjct: 556 ESGMKPNHVIFLSVLSS 572



 Score =  246 bits (627), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 150/494 (30%), Positives = 261/494 (52%), Gaps = 11/494 (2%)

Query: 20  VQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSF 76
           V + A  + + G   L+ F+        +L +S++  YG   N+   R LFD M  R   
Sbjct: 172 VSELAHVQCLHGCAILYGFMSD-----INLSNSMLNVYGKCGNIEYSRKLFDYMDHRDLV 226

Query: 77  LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGR 136
            +N+++  YAQ G   + L + L  +RL  +     T+  V+         KLG  LHG+
Sbjct: 227 SWNSLISAYAQIGNICEVL-LLLKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRCLHGQ 285

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEA 196
           +L  GF +D  V   LI +Y+  G++  A ++F+   +  VV W  +ISG  +N  A +A
Sbjct: 286 ILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFERSSDKDVVLWTAMISGLVQNGSADKA 345

Query: 197 LVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
           L VF  MLK GV+P  A++ SV+ AC  L    +G  I   +    L  ++A  N+LV M
Sbjct: 346 LAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQELPLDVATQNSLVTM 405

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y KCG ++++ +VFD M+ RD+V+W +M+ GYA NG V  AL LF  M+ +   P+S+TI
Sbjct: 406 YAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFNEMRSDNQTPDSITI 465

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
            SLL  C+S   L  G+ +H++ I+  L   ++V+T+L+DMY KC  +  + + F +   
Sbjct: 466 VSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCKCGDLDTAQRCFNQMPS 525

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
              V W+AI+ G  ++G    A+  + + L   ++PN     S+L + +    ++Q +NI
Sbjct: 526 HDLVSWSAIIVGYGYHGKGEAALRFYSKFLESGMKPNHVIFLSVLSSCSHNGLVEQGLNI 585

Query: 437 HCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           +  + + +G    +E    ++D+ S+ G +E A+ ++ +    D  + V  +I+     +
Sbjct: 586 YESMTKDFGIAPDLEHHACVVDLLSRAGRVEEAYNVYKK-KFPDPVLDVLGIILDACRAN 644

Query: 496 GHGETAVSLFKEMV 509
           G+ E   ++  +++
Sbjct: 645 GNNELGDTIANDIL 658



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 127/455 (27%), Positives = 231/455 (50%), Gaps = 18/455 (3%)

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE-- 236
           S N  I+ +       + L  +  MLK+ V  D  +  S+L AC +L    +G  +H+  
Sbjct: 28  SVNATINHHSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRI 87

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
           LV+G  L   IA+  +L++ Y K G  + AR VFD M ER+VV WT++I  Y+  G V  
Sbjct: 88  LVSGLSLDAYIAS--SLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPE 145

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A  LF  M+ +G++P+S+T+ SLL   S L +++    LH   I      ++ +  ++++
Sbjct: 146 AFSLFDEMRRQGIQPSSVTVLSLLFGVSELAHVQ---CLHGCAILYGFMSDINLSNSMLN 202

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           +Y KC  ++ S ++F     +  V WN++++     G   + + L + M ++  E    T
Sbjct: 203 VYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLLLKTMRLQGFEAGPQT 262

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
             S+L   A   +L+    +H  ++R GF     V T LI +Y K G ++ A ++F    
Sbjct: 263 FGSVLSVAASRGELKLGRCLHGQILRAGFYLDAHVETSLIVVYLKGGKIDIAFRMFER-- 320

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
             DKD+V+W+ +I+G   +G  + A+++F++M++ GV+P+  T  S + AC+  G  + G
Sbjct: 321 SSDKDVVLWTAMISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLG 380

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
             +  ++L        A   + +V +  + G LD++  ++  M  +     W A++    
Sbjct: 381 TSILGYILRQELPLDVATQNS-LVTMYAKCGHLDQS-SIVFDMMNRRDLVSWNAMVTGYA 438

Query: 597 IHGNVELGEVAAKWLF-ELEPEN--PGNYVLLSKL 628
            +G V      A +LF E+  +N  P +  ++S L
Sbjct: 439 QNGYV----CEALFLFNEMRSDNQTPDSITIVSLL 469


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 222/607 (36%), Positives = 343/607 (56%), Gaps = 12/607 (1%)

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
           VR +FD M +R+   +NT++  Y +     ++ KMF  M+R+G   P   ++  V  A  
Sbjct: 171 VRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMG-IRPTPVSFVNVFPAVW 229

Query: 123 DLAWRKLGIALHGRVLITGFDM--DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
            ++       L+G V+  G D   D FV +  I MY   G V  AR++FD   E +   W
Sbjct: 230 RMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVW 289

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           NT+I GY +N    EA+ +F  +++S     D  + +S L A   L+ +E+GR +H  + 
Sbjct: 290 NTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYIL 349

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
                  +   NA++ MY +CGS+  +  VF  M ERDVVTW +M++ +  NG     L 
Sbjct: 350 KSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLM 409

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           L   MQ +G   +S+T+ +LLS  S+L   + G+  HA+ I+  ++ E + ++ LIDMYA
Sbjct: 410 LVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGM-DSYLIDMYA 468

Query: 360 KCNLVKLSFQVFARTSK--KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           K  L+  + Q+F + S   +    WNA++AG   NGL+ +   +FR+M+ + V PN  TL
Sbjct: 469 KSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTL 528

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            S+LPA   +  +     IH + IR      V V T L+D+YSK G++  A  +F+E   
Sbjct: 529 ASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAET-- 586

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            +K+ V ++ +I+ YG HG GE A+SLF  M+ SG++P+ VTF + L ACS+ GL+DEGL
Sbjct: 587 LEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGL 646

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK-PTHAVWGALLGACV 596
            +F  M   ++    A+HY C+ D+LGR GR+ EAY+ ++ +  +  T  +WG+LLGAC 
Sbjct: 647 RIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACR 706

Query: 597 IHGNVELGEVAAKWLFELEPENP--GNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP 654
           IHG  ELG+V A  L E+E  +   G +VLLS +Y+A   W + + VR  M +KGL K  
Sbjct: 707 IHGEFELGKVVANKLLEMEKGSSLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEA 766

Query: 655 AHSLIEV 661
             S +EV
Sbjct: 767 GCSWVEV 773



 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 175/596 (29%), Positives = 283/596 (47%), Gaps = 50/596 (8%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           GH      LFD +   ++ L+NT++  +  N    D+L  +  M        D+YT+   
Sbjct: 51  GHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSST 110

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMY-------------MNFGEVKA 164
           +KAC      KLG ALH  VL + F     V N L+ MY              +F     
Sbjct: 111 LKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDL 170

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
            R+VFD M + +VV+WNT+IS Y K     EA  +F  M++ G+ P   S V+V PA   
Sbjct: 171 VRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWR 230

Query: 225 LKEIEMGRMIHELVA--GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
           + + +   +++ LV   G     +    ++ + MY + G V+ AR +FD   ER+   W 
Sbjct: 231 MSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWN 290

Query: 283 SMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
           +MI GY  N     A+ LF Q+M+ E    + +T  S L+A S L +L+ GR LHA+ +K
Sbjct: 291 TMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILK 350

Query: 342 QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVEL 401
            +   +V++  A+I MY++C  +  SF+VF+   ++  V WN +++  V NGL  + + L
Sbjct: 351 SSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLML 410

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
              M  +    +  TL +LL   + L   +     H YLIR+G +    + + LID+Y+K
Sbjct: 411 VFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHG-IQFEGMDSYLIDMYAK 469

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
            G + +A ++F +    D+D   W+ +IAGY  +G  E   ++F++M++  V+PN VT  
Sbjct: 470 SGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLA 529

Query: 522 SALHACSHGGLLDEGLDLFNF------------------MLENHQTCSRADH-------- 555
           S L AC+  G +  G  +  F                  M       + A++        
Sbjct: 530 SILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEK 589

Query: 556 ----YTCIVDLLGRAGRLDEAYDLIRTM---PLKPTHAVWGALLGACVIHGNVELG 604
               YT ++   G+ G  + A  L   M    +KP    + A+L AC   G V+ G
Sbjct: 590 NSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEG 645



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/473 (26%), Positives = 235/473 (49%), Gaps = 12/473 (2%)

Query: 31  GTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           G+  +  F + S  +F +         G V   R +FD   ER++ ++NT++  Y QN  
Sbjct: 248 GSDFVDDFFVVSSAIFMYAE------LGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNC 301

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             +++ +F+ ++   ++  D+ T+   + A + L W +LG  LH  +L +   +   + N
Sbjct: 302 PIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILN 361

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            +I MY   G +  + KVF  M E  VV+WNT++S + +N    E L++   M K G   
Sbjct: 362 AIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMV 421

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA-LVDMYVKCGSVNEARLV 269
           D  ++ ++L     L+  E+G+  H  +   R G      ++ L+DMY K G +  A+ +
Sbjct: 422 DSVTLTALLSLASNLRSQEIGKQAHAYLI--RHGIQFEGMDSYLIDMYAKSGLITTAQQL 479

Query: 270 FDRMS--ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           F++ S  +RD  TW +MI GY  NG       +F+ M  + VRPN++T+ S+L AC+ + 
Sbjct: 480 FEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMG 539

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            +  G+ +H + I+  L   V V TAL+DMY+K   +  +  VFA T +K +V +  +++
Sbjct: 540 TIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMIS 599

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFL 446
               +G+  +A+ LF  ML   ++P+  T  ++L A +    + + + I   + R Y   
Sbjct: 600 SYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQ 659

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
              E    + D+  + G +  A++    +  +     +W  ++    +HG  E
Sbjct: 660 PSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFE 712


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/641 (32%), Positives = 339/641 (52%), Gaps = 7/641 (1%)

Query: 27  KSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVM 82
           +S+   +QLH  ++  G    T++ ++LV  Y H+ N+     +F  MS+R +  YNT++
Sbjct: 302 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLI 361

Query: 83  KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
              +Q G    ++++F  M  L    PD+ T   ++ AC+       G  LH      GF
Sbjct: 362 NGLSQCGYGEKAMELFKRM-HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGF 420

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
             +  +   L+ +Y    +++ A   F      +VV WN ++  Y      + +  +F  
Sbjct: 421 ASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQ 480

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           M    + P+  +  S+L  C  L ++E+G  IH  +       N    + L+DMY K G 
Sbjct: 481 MQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGK 540

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           ++ A  +  R + +DVV+WT+MI GY        AL  F+ M   G+R + + + + +SA
Sbjct: 541 LDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSA 600

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           C+ L  LK G+ +HA         ++  + AL+ +Y++C  ++ S+  F +T     + W
Sbjct: 601 CAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAW 660

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           NA+++G   +G   +A+ +F +M  E ++ N+ T  S + A +  A+++Q   +H  + +
Sbjct: 661 NALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITK 720

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
            G+ S  EV   LI +Y+KCGS+  A K F E+  K++  V W+ II  Y  HG G  A+
Sbjct: 721 TGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNE--VSWNAIINAYSKHGFGSEAL 778

Query: 503 SLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDL 562
             F +M+ S V+PN VT    L ACSH GL+D+G+  F  M   +    + +HY C+VD+
Sbjct: 779 DSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDM 838

Query: 563 LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNY 622
           L RAG L  A + I+ MP+KP   VW  LL ACV+H N+E+GE AA  L ELEPE+   Y
Sbjct: 839 LTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATY 898

Query: 623 VLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           VLLS LY+  ++W   +  R  M EKG++K P  S IEV+N
Sbjct: 899 VLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKN 939



 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 178/552 (32%), Positives = 275/552 (49%), Gaps = 34/552 (6%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FDEM ER+ F +N ++K  A      +   +F+ M+      P+  T+  V++AC    
Sbjct: 142 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVS-ENVTPNEGTFSGVLEAC---- 196

Query: 126 WRKLGIA------LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
            R   +A      +H R+L  G    T V N LI +Y   G V  AR+VFD +      S
Sbjct: 197 -RGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSS 255

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           W  +ISG  KN    EA+ +F  M   G+ P   +  SVL AC  ++ +E+G  +H LV 
Sbjct: 256 WVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVL 315

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
                 +    NALV +Y   G++  A  +F  MS+RD VT+ ++ING +  G    A+ 
Sbjct: 316 KLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAME 375

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           LF+ M  +G+ P+S T+ SL+ ACS+   L RG+ LHA+T K        +E AL+++YA
Sbjct: 376 LFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYA 435

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           KC  ++ +   F  T  +  V WN +L         R +  +FRQM +E + PN  T  S
Sbjct: 436 KCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPS 495

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           +L     L DL+    IH  +I+  F     V + LID+Y+K G L++A  I   I    
Sbjct: 496 ILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL--IRFAG 553

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
           KD+V W+ +IAGY  +   + A++ F++M+  G++ +EV  T+A+ AC+    L EG  +
Sbjct: 554 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 613

Query: 540 FNFMLENHQTC-----SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA----VWGA 590
                 + Q C     S       +V L  R G+++E+Y     +  + T A     W A
Sbjct: 614 ------HAQACVSGFSSDLPFQNALVTLYSRCGKIEESY-----LAFEQTEAGDNIAWNA 662

Query: 591 LLGACVIHGNVE 602
           L+      GN E
Sbjct: 663 LVSGFQQSGNNE 674



 Score =  252 bits (644), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 160/576 (27%), Positives = 274/576 (47%), Gaps = 19/576 (3%)

Query: 33  KQLHAFIITSGPLFTHLRSS------LVRAY---GHVSNVRILFDEMSERSSFLYNTVMK 83
           +Q+HA I+  G     LR S      L+  Y   G V   R +FD +  +    +  ++ 
Sbjct: 207 EQIHARILYQG-----LRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMIS 261

Query: 84  MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD 143
             ++N    +++++F  M  LG   P  Y +  V+ AC  +   ++G  LHG VL  GF 
Sbjct: 262 GLSKNECEAEAIRLFCDMYVLG-IMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFS 320

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
            DT+V N L+++Y + G + +A  +F  M +   V++NTLI+G  +  Y ++A+ +F  M
Sbjct: 321 SDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRM 380

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
              G+EPD  ++ S++ AC     +  G+ +H          N     AL+++Y KC  +
Sbjct: 381 HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADI 440

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
             A   F      +VV W  M+  Y L  D+RN+  +F+ MQ E + PN  T  S+L  C
Sbjct: 441 ETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTC 500

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
             L  L+ G  +H+  IK N +    V + LIDMYAK   +  ++ +  R + K  V W 
Sbjct: 501 IRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWT 560

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
            ++AG        KA+  FRQML   +  ++  L + + A A L  L++   IH      
Sbjct: 561 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 620

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
           GF S +     L+ +YS+CG +E ++  F +    D   + W+ +++G+   G+ E A+ 
Sbjct: 621 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN--IAWNALVSGFQQSGNNEEALR 678

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563
           +F  M + G+  N  TF SA+ A S    + +G  +   + +     S  +    ++ + 
Sbjct: 679 VFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYD-SETEVCNALISMY 737

Query: 564 GRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            + G + +A      +  K     W A++ A   HG
Sbjct: 738 AKCGSISDAEKQFLEVSTK-NEVSWNAIINAYSKHG 772



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/496 (27%), Positives = 243/496 (48%), Gaps = 7/496 (1%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAYGHVSNVRILF 67
           L   ++ +  LV   +A  ++   +QLHA+    G    + +  +L+  Y   +++    
Sbjct: 385 LEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETAL 444

Query: 68  D---EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           D   E    +  L+N ++  Y       +S ++F  M ++ E  P+ YTYP ++K C  L
Sbjct: 445 DYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQM-QIEEIVPNQYTYPSILKTCIRL 503

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
              +LG  +H +++ T F ++ +V + LI MY   G++  A  +        VVSW T+I
Sbjct: 504 GDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMI 563

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           +GY +  +  +AL  F  ML  G+  D   + + + AC  L+ ++ G+ IH         
Sbjct: 564 AGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFS 623

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            ++   NALV +Y +CG + E+ L F++    D + W ++++G+  +G+   AL +F  M
Sbjct: 624 SDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRM 683

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
             EG+  N+ T GS + A S    +K+G+ +HA   K   + E  V  ALI MYAKC  +
Sbjct: 684 NREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSI 743

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
             + + F   S K  V WNAI+     +G   +A++ F QM+   V PN  TL  +L A 
Sbjct: 744 SDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSAC 803

Query: 425 AILADLQQAMN-IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
           + +  + + +         YG     E    ++D+ ++ G L  A +   E+PIK  D +
Sbjct: 804 SHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIK-PDAL 862

Query: 484 VWSVIIAGYGMHGHGE 499
           VW  +++   +H + E
Sbjct: 863 VWRTLLSACVVHKNME 878



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 226/450 (50%), Gaps = 8/450 (1%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  LH ++L  G D +  +   L   Y+  G++  A KVFD M E ++ +WN +I     
Sbjct: 104 GRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELAS 163

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC-GYLKEIEMGRMIHELVAGGRLGKNIA 248
                E   +F  M+   V P+  +   VL AC G     ++   IH  +    L  +  
Sbjct: 164 RNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTV 223

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             N L+D+Y + G V+ AR VFD +  +D  +W +MI+G + N     A+ LF  M   G
Sbjct: 224 VCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLG 283

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           + P      S+LSAC  +  L+ G  LH   +K     +  V  AL+ +Y     +  + 
Sbjct: 284 IMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAE 343

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
            +F+  S++  V +N ++ G    G   KA+ELF++M ++ +EP+  TL SL+ A +   
Sbjct: 344 HIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADG 403

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            L +   +H Y  + GF S  ++   L+++Y+KC  +E+A   F E  +  +++V+W+V+
Sbjct: 404 TLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEV--ENVVLWNVM 461

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           +  YG+      +  +F++M    + PN+ T+ S L  C   G L+ G  + + ++   +
Sbjct: 462 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII---K 518

Query: 549 TCSRADHYTC--IVDLLGRAGRLDEAYDLI 576
           T  + + Y C  ++D+  + G+LD A+D++
Sbjct: 519 TNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 548



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 191/450 (42%), Gaps = 57/450 (12%)

Query: 201 DWMLKSGVEPDCASVVSVLPAC----GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
           D +   G+ P+  ++  +L  C    G L E   GR +H  +    L  N      L D 
Sbjct: 73  DSVENRGIRPNHQTLKWLLEGCLKTNGSLDE---GRKLHSQILKLGLDSNGCLSEKLFDF 129

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y+  G +  A  VFD M ER + TW  MI   A    +    GLF  M  E V PN  T 
Sbjct: 130 YLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTF 189

Query: 317 GSLLSACSSLYYLKRGRS--------LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
             +L AC       RG S        +HA  + Q L    +V   LID+Y++   V L+ 
Sbjct: 190 SGVLEAC-------RGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLAR 242

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           +VF     K    W A+++G   N    +A+ LF  M V  + P     +S+L A   + 
Sbjct: 243 RVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 302

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            L+    +H  +++ GF S   V   L+ +Y   G+L SA  IFS   +  +D V ++ +
Sbjct: 303 SLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSN--MSQRDAVTYNTL 360

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL------FNF 542
           I G    G+GE A+ LFK M   G++P+  T  S + ACS  G L  G  L        F
Sbjct: 361 INGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGF 420

Query: 543 MLENHQTCSRADHYTCIVD---------------------LLGRAGRLDE---AYDLIRT 578
              N    +  + Y    D                     +L   G LD+   ++ + R 
Sbjct: 421 ASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQ 480

Query: 579 MPLK---PTHAVWGALLGACVIHGNVELGE 605
           M ++   P    + ++L  C+  G++ELGE
Sbjct: 481 MQIEEIVPNQYTYPSILKTCIRLGDLELGE 510


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/618 (33%), Positives = 332/618 (53%), Gaps = 72/618 (11%)

Query: 114 YPIVIKACTDLAWRKLGI-ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           +  ++ +C  L    + +  +H  V+ +GF  + F+ N LI  Y   G ++  R++FD M
Sbjct: 22  FAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKM 81

Query: 173 WEHSV-------------------------------VSWNTLISGYFKNAYAKEALVVFD 201
            + +V                                +WN+++SG+ ++   +EAL  F 
Sbjct: 82  PQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFA 141

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
            M K G   +  +  S L AC  L ++  G  IH L+A      ++   +ALVDMY KCG
Sbjct: 142 MMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCG 201

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
           +VN+A+ VFD M +R+VV+W S+I  Y  NG    AL +FQ+M    V P+ +T+ S++S
Sbjct: 202 NVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVIS 261

Query: 322 ACSSLYYLKRGRSLHAWTIKQN-LECEVIVETALIDMYAKCNLVKLSFQVF--------- 371
           AC+SL  +K G+ +HA  +K + L  ++I+  A +DMYAKC+ +K +  +F         
Sbjct: 262 ACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVI 321

Query: 372 ----------------------ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
                                  + +++  V WNA++AG   NG   +A+ LF  +  E 
Sbjct: 322 AETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRES 381

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL------SVVEVSTGLIDIYSKCG 463
           V P   T  ++L A A LADL   M  H +++++GF         + V   LID+Y KCG
Sbjct: 382 VCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCG 441

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            +E  + +F ++   ++D V W+ +I G+  +G+G  A+ LF+EM+ SG +P+ +T    
Sbjct: 442 CVEEGYLVFRKM--MERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGV 499

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           L AC H G ++EG   F+ M  +       DHYTC+VDLLGRAG L+EA  +I  MP++P
Sbjct: 500 LSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQP 559

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643
              +WG+LL AC +H N+ LG+  A+ LFE+E  N G YVLLS +Y+ + +W DA NVR 
Sbjct: 560 DSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRK 619

Query: 644 VMDEKGLRKAPAHSLIEV 661
           +M ++G+ K P  S I++
Sbjct: 620 LMRKEGVTKQPGCSWIKI 637



 Score =  252 bits (643), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 158/517 (30%), Positives = 258/517 (49%), Gaps = 41/517 (7%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFL 77
           +L+  YA   S+   +QL   +        +   + +   G +     LF  M ER    
Sbjct: 60  RLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCT 119

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N+++  +AQ+    ++L  F  M + G +  + YT+   + AC+ L     G+ +H  +
Sbjct: 120 WNSMVSGFAQHDRCEEALYYFAMMHKEG-FVLNEYTFASGLSACSGLNDMNRGVQIHSLI 178

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
             +    D ++G+ L+ MY   G V  A++VFD M + +VVSWN+LI+ Y +N  A EAL
Sbjct: 179 AKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEAL 238

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVDM 256
            VF  ML+S VEPD  ++ SV+ AC  L  I++G+ +H  +V   +L  +I   NA VDM
Sbjct: 239 KVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDM 298

Query: 257 YVKCGSVNEARLVFD-------------------------------RMSERDVVTWTSMI 285
           Y KC  + EAR +FD                               +M+ER+VV+W ++I
Sbjct: 299 YAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALI 358

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL- 344
            GY  NG+   AL LF L++ E V P   T  ++L AC+ L  L  G   H   +K    
Sbjct: 359 AGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFK 418

Query: 345 -----ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAV 399
                E ++ V  +LIDMY KC  V+  + VF +  ++  V WNA++ G   NG   +A+
Sbjct: 419 FQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEAL 478

Query: 400 ELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDI 458
           ELFR+ML    +P+  T+  +L A      +++  +    + R +G   + +  T ++D+
Sbjct: 479 ELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDL 538

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
             + G LE A  I  E+P++  D V+W  ++A   +H
Sbjct: 539 LGRAGFLEEAKSIIEEMPVQ-PDSVIWGSLLAACKVH 574


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/632 (34%), Positives = 336/632 (53%), Gaps = 7/632 (1%)

Query: 33  KQLHAFIITSGPLFT-HLRSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQN 88
           KQ+HA     G L    + S+LV  Y     + +   +F  M E++   +N ++  YAQ 
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQR 292

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G     LK+F  M+ L +   + +T   V+K C +    K G  +H  ++  G++ + F+
Sbjct: 293 GDVTGVLKLFCSMMEL-DVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFI 351

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           G  L+ MY   G    A  VF  + +  +V W+ LI+   +   ++E++ +F  M     
Sbjct: 352 GCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDT 411

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P+  ++ S+L A      ++ G+ IH  V       ++A  NALV MY+K G V++   
Sbjct: 412 LPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTK 471

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +++ M +RD+++W + ++G    G     L +F  M  EG  PN  T  S+L +CS L+ 
Sbjct: 472 LYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFD 531

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           +  GR +HA  IK  L+    V TALIDMYAKC  ++ +   F R S +    W  I+  
Sbjct: 532 VHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITN 591

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
                   KA+  FRQM  E V+PN+ TL   L   + LA L+    +H  + + G +S 
Sbjct: 592 YAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSD 651

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           + V + L+D+Y+KCG +E A  +F E  I+ +D + W+ II GY  +G G  A++ F+ M
Sbjct: 652 MFVGSALVDMYAKCGCMEEAEALF-EALIR-RDTIAWNTIICGYAQNGQGNKALTAFRMM 709

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
           +  G+ P+ VTFT  L ACSH GL++EG + FN M  +       DH  C+VD+LGR G+
Sbjct: 710 LDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGK 769

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
            DE  D I+ M L     +W  +LGA  +H N+ LGE AA  LFEL+PE   +Y+LLS +
Sbjct: 770 FDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNI 829

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           ++   RW D + VR +M  KG++K P  S +E
Sbjct: 830 FATEGRWDDVKRVRSLMSSKGVKKEPGCSWVE 861



 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 171/581 (29%), Positives = 291/581 (50%), Gaps = 15/581 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITS--GPLFTHLRSSLVRAYG---HVSNVRILFDEMSER 73
           ++++ A+ +S+   K +H  I+     P  +HL  SLV  Y    + +  R++  +M +R
Sbjct: 118 MLRECASKRSLGVAKAIHGLIVKDVINPD-SHLWVSLVNVYAKCRYSAYARLVLAKMPDR 176

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
               +  +++     G ++DS+ +F  M   G   P+ +T    +KAC+      LG  +
Sbjct: 177 DVVSWTALIQGLVAEGFANDSIYLFQEMQNEG-IMPNEFTLATGLKACSLCMALDLGKQM 235

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H +    G  +D FVG+ L+ +Y   GE++ A K+F  M E + V+WN L++GY +    
Sbjct: 236 HAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDV 295

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
              L +F  M++  V+ +  ++ +VL  C   K ++ G++IH L+       N      L
Sbjct: 296 TGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGL 355

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           VDMY KCG   +A  VF  + + D+V W+++I      G    ++ LF LM+     PN 
Sbjct: 356 VDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQ 415

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            TI SLLSA ++   L+ G+S+HA   K   E +V V  AL+ MY K   V    +++  
Sbjct: 416 YTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYES 475

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
              +  + WNA L+G    G+  + + +F  ML E   PN  T  S+L + + L D+   
Sbjct: 476 MVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYG 535

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             +H ++I+        V T LID+Y+KC  LE A   F+ + +  +D+  W+VII  Y 
Sbjct: 536 RQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSV--RDLFTWTVIITNYA 593

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
               GE A++ F++M Q GV+PNE T    L  CS    L+ G  L + + ++      +
Sbjct: 594 QTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHV---S 650

Query: 554 DHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           D +  + +VD+  + G ++EA  L   +  + T A W  ++
Sbjct: 651 DMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIA-WNTII 690



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 146/535 (27%), Positives = 252/535 (47%), Gaps = 39/535 (7%)

Query: 114 YPIVIKACTDLAWRKLGIA--LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
           Y  +++ C   + R LG+A  +HG ++    + D+ +   L+ +Y        AR V   
Sbjct: 115 YSSMLRECA--SKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAK 172

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M +  VVSW  LI G     +A +++ +F  M   G+ P+  ++ + L AC     +++G
Sbjct: 173 MPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLG 232

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           + +H       L  ++   +ALVD+Y KCG +  A  +F  M E++ VTW  ++NGYA  
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQR 292

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           GDV   L LF  M    V+ N  T+ ++L  C++   LK+G+ +H+  IK   E    + 
Sbjct: 293 GDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIG 352

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
             L+DMY+KC L   +  VF    K   V W+A++      G + ++++LF  M +    
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL 412

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           PN  T+ SLL A     +LQ   +IH  + +YGF + V VS  L+ +Y K G +    K+
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKL 472

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS--- 528
           +  +   D+D++ W+  ++G    G  +  +++F  M++ G  PN  TF S L +CS   
Sbjct: 473 YESMV--DRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLF 530

Query: 529 --------HGGLLDEGLDLFNF----MLENHQTC---SRAD------------HYTCIVD 561
                   H  ++   LD  NF    +++ +  C     AD             +T I+ 
Sbjct: 531 DVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIIT 590

Query: 562 LLGRAGRLDEAYDLIRTMP---LKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
              +  + ++A +  R M    +KP        L  C    ++E G+     +F+
Sbjct: 591 NYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFK 645


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/535 (36%), Positives = 313/535 (58%), Gaps = 3/535 (0%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H  +++TG          LI  Y   G +++AR+VFD   +  V +WN +I  Y +   
Sbjct: 26  IHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGA 85

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
             EAL ++  M   GV PD ++   VL AC    ++  G            G ++    A
Sbjct: 86  MFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAA 145

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           ++++Y KCG ++EA  VFD+M  RD+V WT+MI G A NG  R A+ +++ M  + V  +
Sbjct: 146 VLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGD 205

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            + +  L+ AC++L + K G S+H + I++++  +VIV+T+L+DMYAK   ++L+  VF 
Sbjct: 206 GVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFR 265

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           R   K  + W+A+++G   NG A  A++L   M     +P+  +L S+L A + +  L+ 
Sbjct: 266 RMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKL 325

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
             ++H Y++R      V  ST +ID+YSKCGSL  A  +F +I  +D   + W+ IIA Y
Sbjct: 326 GKSVHGYIVRRLHFDCVS-STAVIDMYSKCGSLSFARTVFDQISFRDS--ISWNAIIASY 382

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
           G+HG GE A+SLF +M ++ V+P+  TF S L A SH GL+++G   F+ M+  ++    
Sbjct: 383 GIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPS 442

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
             HY C+VDLL RAGR++EA +LI +M  +P  A+W ALL  C+ HG   +GE+AAK + 
Sbjct: 443 EKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVL 502

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           EL P++PG Y L+S  ++  RRW +   VR +M + G++K P +S++EV   L A
Sbjct: 503 ELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHA 557



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 150/484 (30%), Positives = 265/484 (54%), Gaps = 13/484 (2%)

Query: 34  QLHAFIITSGPLFTHLRSS--LVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           ++HA +I +G +F H  S+  L+++Y   GH+ + R +FD+  +     +N ++  Y++ 
Sbjct: 25  KIHALMILTG-IFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRR 83

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           GA  ++L ++  M   G   PD+ TY +V+KACT     + G     + +  G+  D FV
Sbjct: 84  GAMFEALSLYHRMASEG-VRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFV 142

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           G  ++ +Y   G++  A +VFD M    +V W T+I+G  +N  A+EA+ ++  M K  V
Sbjct: 143 GAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRV 202

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           E D   ++ ++ AC  L   +MG  IH  +    +  ++    +LVDMY K G +  A  
Sbjct: 203 EGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASC 262

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VF RM  ++V++W+++I+G+A NG   NAL L   MQ  G +P+S+++ S+L ACS + +
Sbjct: 263 VFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGF 322

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           LK G+S+H + +++ L  + +  TA+IDMY+KC  +  +  VF + S + ++ WNAI+A 
Sbjct: 323 LKLGKSVHGYIVRR-LHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIAS 381

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI-RYGFLS 447
              +G   +A+ LF QM    V+P+ AT  SLL A++    +++       ++  Y    
Sbjct: 382 YGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQP 441

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH---GETAVSL 504
             +    ++D+ S+ G +E A ++  E  I +  I +W  +++G   HG    GE A   
Sbjct: 442 SEKHYACMVDLLSRAGRVEEAQELI-ESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKK 500

Query: 505 FKEM 508
             E+
Sbjct: 501 VLEL 504


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/632 (34%), Positives = 336/632 (53%), Gaps = 7/632 (1%)

Query: 33  KQLHAFIITSGPLFT-HLRSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQN 88
           KQ+HA     G L    + S+LV  Y     + +   +F  M E++   +N ++  YAQ 
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQR 292

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G     LK+F  M+ L +   + +T   V+K C +    K G  +H  ++  G++ + F+
Sbjct: 293 GDVTGVLKLFCSMMEL-DVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFI 351

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           G  L+ MY   G    A  VF  + +  +V W+ LI+   +   ++E++ +F  M     
Sbjct: 352 GCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDT 411

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P+  ++ S+L A      ++ G+ IH  V       ++A  NALV MY+K G V++   
Sbjct: 412 LPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTK 471

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +++ M +RD+++W + ++G    G     L +F  M  EG  PN  T  S+L +CS L+ 
Sbjct: 472 LYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFD 531

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           +  GR +HA  IK  L+    V TALIDMYAKC  ++ +   F R S +    W  I+  
Sbjct: 532 VHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITN 591

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
                   KA+  FRQM  E V+PN+ TL   L   + LA L+    +H  + + G +S 
Sbjct: 592 YAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSD 651

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           + V + L+D+Y+KCG +E A  +F E  I+ +D + W+ II GY  +G G  A++ F+ M
Sbjct: 652 MFVGSALVDMYAKCGCMEEAEALF-EALIR-RDTIAWNTIICGYAQNGQGNKALTAFRMM 709

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
           +  G+ P+ VTFT  L ACSH GL++EG + FN M  +       DH  C+VD+LGR G+
Sbjct: 710 LDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGK 769

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
            DE  D I+ M L     +W  +LGA  +H N+ LGE AA  LFEL+PE   +Y+LLS +
Sbjct: 770 FDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNI 829

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           ++   RW D + VR +M  KG++K P  S +E
Sbjct: 830 FATEGRWDDVKRVRSLMSSKGVKKEPGCSWVE 861



 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 171/581 (29%), Positives = 291/581 (50%), Gaps = 15/581 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITS--GPLFTHLRSSLVRAYG---HVSNVRILFDEMSER 73
           ++++ A+ +S+   K +H  I+     P  +HL  SLV  Y    + +  R++  +M +R
Sbjct: 118 MLRECASKRSLGVAKAIHGLIVKDVINPD-SHLWVSLVNVYAKCRYSAYARLVLAKMPDR 176

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
               +  +++     G ++DS+ +F  M   G   P+ +T    +KAC+      LG  +
Sbjct: 177 DVVSWTALIQGLVAEGFANDSIYLFQEMQNEG-IMPNEFTLATGLKACSLCMALDLGKQM 235

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H +    G  +D FVG+ L+ +Y   GE++ A K+F  M E + V+WN L++GY +    
Sbjct: 236 HAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDV 295

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
              L +F  M++  V+ +  ++ +VL  C   K ++ G++IH L+       N      L
Sbjct: 296 TGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGL 355

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           VDMY KCG   +A  VF  + + D+V W+++I      G    ++ LF LM+     PN 
Sbjct: 356 VDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQ 415

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            TI SLLSA ++   L+ G+S+HA   K   E +V V  AL+ MY K   V    +++  
Sbjct: 416 YTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYES 475

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
              +  + WNA L+G    G+  + + +F  ML E   PN  T  S+L + + L D+   
Sbjct: 476 MVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYG 535

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             +H ++I+        V T LID+Y+KC  LE A   F+ + +  +D+  W+VII  Y 
Sbjct: 536 RQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSV--RDLFTWTVIITNYA 593

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
               GE A++ F++M Q GV+PNE T    L  CS    L+ G  L + + ++      +
Sbjct: 594 QTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHV---S 650

Query: 554 DHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           D +  + +VD+  + G ++EA  L   +  + T A W  ++
Sbjct: 651 DMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIA-WNTII 690



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 146/535 (27%), Positives = 252/535 (47%), Gaps = 39/535 (7%)

Query: 114 YPIVIKACTDLAWRKLGIA--LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
           Y  +++ C   + R LG+A  +HG ++    + D+ +   L+ +Y        AR V   
Sbjct: 115 YSSMLRECA--SKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAK 172

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M +  VVSW  LI G     +A +++ +F  M   G+ P+  ++ + L AC     +++G
Sbjct: 173 MPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLG 232

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           + +H       L  ++   +ALVD+Y KCG +  A  +F  M E++ VTW  ++NGYA  
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQR 292

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           GDV   L LF  M    V+ N  T+ ++L  C++   LK+G+ +H+  IK   E    + 
Sbjct: 293 GDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIG 352

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
             L+DMY+KC L   +  VF    K   V W+A++      G + ++++LF  M +    
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTL 412

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           PN  T+ SLL A     +LQ   +IH  + +YGF + V VS  L+ +Y K G +    K+
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKL 472

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS--- 528
           +  +   D+D++ W+  ++G    G  +  +++F  M++ G  PN  TF S L +CS   
Sbjct: 473 YESMV--DRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLF 530

Query: 529 --------HGGLLDEGLDLFNF----MLENHQTC---SRAD------------HYTCIVD 561
                   H  ++   LD  NF    +++ +  C     AD             +T I+ 
Sbjct: 531 DVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIIT 590

Query: 562 LLGRAGRLDEAYDLIRTMP---LKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
              +  + ++A +  R M    +KP        L  C    ++E G+     +F+
Sbjct: 591 NYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFK 645


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/641 (32%), Positives = 339/641 (52%), Gaps = 7/641 (1%)

Query: 27  KSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVM 82
           +S+   +QLH  ++  G    T++ ++LV  Y H+ N+     +F  MS+R +  YNT++
Sbjct: 262 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLI 321

Query: 83  KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
              +Q G    ++++F  M  L    PD+ T   ++ AC+       G  LH      GF
Sbjct: 322 NGLSQCGYGEKAMELFKRM-HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGF 380

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
             +  +   L+ +Y    +++ A   F      +VV WN ++  Y      + +  +F  
Sbjct: 381 ASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQ 440

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           M    + P+  +  S+L  C  L ++E+G  IH  +       N    + L+DMY K G 
Sbjct: 441 MQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGK 500

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           ++ A  +  R + +DVV+WT+MI GY        AL  F+ M   G+R + + + + +SA
Sbjct: 501 LDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSA 560

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           C+ L  LK G+ +HA         ++  + AL+ +Y++C  ++ S+  F +T     + W
Sbjct: 561 CAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAW 620

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           NA+++G   +G   +A+ +F +M  E ++ N+ T  S + A +  A+++Q   +H  + +
Sbjct: 621 NALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITK 680

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
            G+ S  EV   LI +Y+KCGS+  A K F E+  K++  V W+ II  Y  HG G  A+
Sbjct: 681 TGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNE--VSWNAIINAYSKHGFGSEAL 738

Query: 503 SLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDL 562
             F +M+ S V+PN VT    L ACSH GL+D+G+  F  M   +    + +HY C+VD+
Sbjct: 739 DSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDM 798

Query: 563 LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNY 622
           L RAG L  A + I+ MP+KP   VW  LL ACV+H N+E+GE AA  L ELEPE+   Y
Sbjct: 799 LTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATY 858

Query: 623 VLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           VLLS LY+  ++W   +  R  M EKG++K P  S IEV+N
Sbjct: 859 VLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKN 899



 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 178/552 (32%), Positives = 275/552 (49%), Gaps = 34/552 (6%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FDEM ER+ F +N ++K  A      +   +F+ M+      P+  T+  V++AC    
Sbjct: 102 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVS-ENVTPNEGTFSGVLEAC---- 156

Query: 126 WRKLGIA------LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
            R   +A      +H R+L  G    T V N LI +Y   G V  AR+VFD +      S
Sbjct: 157 -RGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSS 215

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           W  +ISG  KN    EA+ +F  M   G+ P   +  SVL AC  ++ +E+G  +H LV 
Sbjct: 216 WVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVL 275

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
                 +    NALV +Y   G++  A  +F  MS+RD VT+ ++ING +  G    A+ 
Sbjct: 276 KLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAME 335

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           LF+ M  +G+ P+S T+ SL+ ACS+   L RG+ LHA+T K        +E AL+++YA
Sbjct: 336 LFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYA 395

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           KC  ++ +   F  T  +  V WN +L         R +  +FRQM +E + PN  T  S
Sbjct: 396 KCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPS 455

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           +L     L DL+    IH  +I+  F     V + LID+Y+K G L++A  I   I    
Sbjct: 456 ILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL--IRFAG 513

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
           KD+V W+ +IAGY  +   + A++ F++M+  G++ +EV  T+A+ AC+    L EG  +
Sbjct: 514 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 573

Query: 540 FNFMLENHQTC-----SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA----VWGA 590
                 + Q C     S       +V L  R G+++E+Y     +  + T A     W A
Sbjct: 574 ------HAQACVSGFSSDLPFQNALVTLYSRCGKIEESY-----LAFEQTEAGDNIAWNA 622

Query: 591 LLGACVIHGNVE 602
           L+      GN E
Sbjct: 623 LVSGFQQSGNNE 634



 Score =  252 bits (643), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 160/576 (27%), Positives = 274/576 (47%), Gaps = 19/576 (3%)

Query: 33  KQLHAFIITSGPLFTHLRSS------LVRAY---GHVSNVRILFDEMSERSSFLYNTVMK 83
           +Q+HA I+  G     LR S      L+  Y   G V   R +FD +  +    +  ++ 
Sbjct: 167 EQIHARILYQG-----LRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMIS 221

Query: 84  MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD 143
             ++N    +++++F  M  LG   P  Y +  V+ AC  +   ++G  LHG VL  GF 
Sbjct: 222 GLSKNECEAEAIRLFCDMYVLG-IMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFS 280

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
            DT+V N L+++Y + G + +A  +F  M +   V++NTLI+G  +  Y ++A+ +F  M
Sbjct: 281 SDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRM 340

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
              G+EPD  ++ S++ AC     +  G+ +H          N     AL+++Y KC  +
Sbjct: 341 HLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADI 400

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
             A   F      +VV W  M+  Y L  D+RN+  +F+ MQ E + PN  T  S+L  C
Sbjct: 401 ETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTC 460

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
             L  L+ G  +H+  IK N +    V + LIDMYAK   +  ++ +  R + K  V W 
Sbjct: 461 IRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWT 520

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
            ++AG        KA+  FRQML   +  ++  L + + A A L  L++   IH      
Sbjct: 521 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 580

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
           GF S +     L+ +YS+CG +E ++  F +    D   + W+ +++G+   G+ E A+ 
Sbjct: 581 GFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN--IAWNALVSGFQQSGNNEEALR 638

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563
           +F  M + G+  N  TF SA+ A S    + +G  +   + +     S  +    ++ + 
Sbjct: 639 VFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYD-SETEVCNALISMY 697

Query: 564 GRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            + G + +A      +  K     W A++ A   HG
Sbjct: 698 AKCGSISDAEKQFLEVSTK-NEVSWNAIINAYSKHG 732



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 138/496 (27%), Positives = 243/496 (48%), Gaps = 7/496 (1%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAYGHVSNVRILF 67
           L   ++ +  LV   +A  ++   +QLHA+    G    + +  +L+  Y   +++    
Sbjct: 345 LEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETAL 404

Query: 68  D---EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           D   E    +  L+N ++  Y       +S ++F  M ++ E  P+ YTYP ++K C  L
Sbjct: 405 DYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQM-QIEEIVPNQYTYPSILKTCIRL 463

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
              +LG  +H +++ T F ++ +V + LI MY   G++  A  +        VVSW T+I
Sbjct: 464 GDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMI 523

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           +GY +  +  +AL  F  ML  G+  D   + + + AC  L+ ++ G+ IH         
Sbjct: 524 AGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFS 583

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            ++   NALV +Y +CG + E+ L F++    D + W ++++G+  +G+   AL +F  M
Sbjct: 584 SDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRM 643

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
             EG+  N+ T GS + A S    +K+G+ +HA   K   + E  V  ALI MYAKC  +
Sbjct: 644 NREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSI 703

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
             + + F   S K  V WNAI+     +G   +A++ F QM+   V PN  TL  +L A 
Sbjct: 704 SDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSAC 763

Query: 425 AILADLQQAMN-IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
           + +  + + +         YG     E    ++D+ ++ G L  A +   E+PIK  D +
Sbjct: 764 SHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIK-PDAL 822

Query: 484 VWSVIIAGYGMHGHGE 499
           VW  +++   +H + E
Sbjct: 823 VWRTLLSACVVHKNME 838



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 226/450 (50%), Gaps = 8/450 (1%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  LH ++L  G D +  +   L   Y+  G++  A KVFD M E ++ +WN +I     
Sbjct: 64  GRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELAS 123

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC-GYLKEIEMGRMIHELVAGGRLGKNIA 248
                E   +F  M+   V P+  +   VL AC G     ++   IH  +    L  +  
Sbjct: 124 RNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTV 183

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             N L+D+Y + G V+ AR VFD +  +D  +W +MI+G + N     A+ LF  M   G
Sbjct: 184 VCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLG 243

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           + P      S+LSAC  +  L+ G  LH   +K     +  V  AL+ +Y     +  + 
Sbjct: 244 IMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAE 303

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
            +F+  S++  V +N ++ G    G   KA+ELF++M ++ +EP+  TL SL+ A +   
Sbjct: 304 HIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADG 363

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            L +   +H Y  + GF S  ++   L+++Y+KC  +E+A   F E  +  +++V+W+V+
Sbjct: 364 TLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEV--ENVVLWNVM 421

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           +  YG+      +  +F++M    + PN+ T+ S L  C   G L+ G  + + ++   +
Sbjct: 422 LVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQII---K 478

Query: 549 TCSRADHYTC--IVDLLGRAGRLDEAYDLI 576
           T  + + Y C  ++D+  + G+LD A+D++
Sbjct: 479 TNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 508



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 191/450 (42%), Gaps = 57/450 (12%)

Query: 201 DWMLKSGVEPDCASVVSVLPAC----GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
           D +   G+ P+  ++  +L  C    G L E   GR +H  +    L  N      L D 
Sbjct: 33  DSVENRGIRPNHQTLKWLLEGCLKTNGSLDE---GRKLHSQILKLGLDSNGCLSEKLFDF 89

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y+  G +  A  VFD M ER + TW  MI   A    +    GLF  M  E V PN  T 
Sbjct: 90  YLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTF 149

Query: 317 GSLLSACSSLYYLKRGRS--------LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
             +L AC       RG S        +HA  + Q L    +V   LID+Y++   V L+ 
Sbjct: 150 SGVLEAC-------RGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLAR 202

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           +VF     K    W A+++G   N    +A+ LF  M V  + P     +S+L A   + 
Sbjct: 203 RVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 262

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            L+    +H  +++ GF S   V   L+ +Y   G+L SA  IFS +    +D V ++ +
Sbjct: 263 SLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS--QRDAVTYNTL 320

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL------FNF 542
           I G    G+GE A+ LFK M   G++P+  T  S + ACS  G L  G  L        F
Sbjct: 321 INGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGF 380

Query: 543 MLENHQTCSRADHYTCIVD---------------------LLGRAGRLDE---AYDLIRT 578
              N    +  + Y    D                     +L   G LD+   ++ + R 
Sbjct: 381 ASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQ 440

Query: 579 MPLK---PTHAVWGALLGACVIHGNVELGE 605
           M ++   P    + ++L  C+  G++ELGE
Sbjct: 441 MQIEEIVPNQYTYPSILKTCIRLGDLELGE 470


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 224/642 (34%), Positives = 349/642 (54%), Gaps = 21/642 (3%)

Query: 33  KQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           + +HA+I+ SG     +  +L   +  + G V++  +LF++M ER    +N  +   AQ+
Sbjct: 148 RSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQS 206

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G    +L++F  M +L    P   T  I +  C  +   +   A+H  V  +G +    V
Sbjct: 207 GDLGIALELFQRM-QLEGVRPARITLVIALTVCATI---RQAQAIHFIVRESGLEQTLVV 262

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
              L + Y   G +  A++VFD   E  VVSWN ++  Y ++ +  EA ++F  ML  G+
Sbjct: 263 STALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGI 322

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P   ++V+    C  L+    GRMIH       L ++I   NAL+DMY +CGS  EAR 
Sbjct: 323 SPSKVTLVNASTGCSSLR---FGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARH 379

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS--- 325
           +F R+   + V+W +MI G +  G ++ A+ LFQ MQ EG+ P   T  +LL A +S   
Sbjct: 380 LFKRIP-CNAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPE 438

Query: 326 -LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK---LSFQVFARTSKKKTVP 381
               +  GR LH+  +      E  + TA++ MYA C  +     SFQ  A   +   V 
Sbjct: 439 EARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVS 498

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           WNAI++    +G  ++A+  FR+M +  V PN  T  ++L A A  A L +   +H +L 
Sbjct: 499 WNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLR 558

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
             G  S + V+T L  +Y +CGSLESA +IF ++ + ++D+V+++ +IA Y  +G    A
Sbjct: 559 HSGMESNLFVATALASMYGRCGSLESAREIFEKVAV-ERDVVIFNAMIAAYSQNGLAGEA 617

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561
           + LF  M Q G +P+E +F S L ACSHGGL DEG ++F  M +++      DHY C VD
Sbjct: 618 LKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVD 677

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGN 621
           +LGRAG L +A +LIR M +KPT  VW  LLGAC  + +V+ G +A   + EL+P +   
Sbjct: 678 VLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESA 737

Query: 622 YVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           YV+LS + +   +W +A  VR  M+ +GLRK    S IE+++
Sbjct: 738 YVVLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIEIKS 779



 Score =  261 bits (668), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 178/628 (28%), Positives = 320/628 (50%), Gaps = 25/628 (3%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVRILF 67
           +  HLV +L++     + ++  +++HA I++ G L   L + L+R Y     + +V  +F
Sbjct: 28  RPAHLV-RLLRAAGDDRLLSQGRRIHARIVSLG-LEEELGNHLLRLYLKCESLGDVEEVF 85

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
             +  R    + T++  Y ++G +  ++ MF  M + G    D  T+  V+KAC  L   
Sbjct: 86  SRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEG-VRCDAVTFLAVLKACARLGDL 144

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
             G ++H  ++ +G    + + N L+ +Y + G V +A  +F+ M E  +VSWN  I+  
Sbjct: 145 SQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAAN 203

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            ++     AL +F  M   GV P   ++V  L  C  +++ +    IH +V    L + +
Sbjct: 204 AQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQAQ---AIHFIVRESGLEQTL 260

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
               AL   Y + G + +A+ VFDR +ERDVV+W +M+  YA +G +  A  LF  M  E
Sbjct: 261 VVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHE 320

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           G+ P+ +T+ +  + CSSL +   GR +H   +++ L+ ++++  AL+DMY +C   + +
Sbjct: 321 GISPSKVTLVNASTGCSSLRF---GRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEA 377

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
             +F R      V WN ++AG    G  ++AVELF++M +E + P  AT  +LL A A  
Sbjct: 378 RHLFKRI-PCNAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASN 436

Query: 428 ADLQQAM----NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DI 482
            +  +AM     +H  ++  G+ S   + T ++ +Y+ CG+++ A   F    ++D+ D+
Sbjct: 437 PEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDV 496

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
           V W+ II+    HGHG+ A+  F+ M   GV PN++T  + L AC+    L EG ++ + 
Sbjct: 497 VSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEG-EIVHD 555

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
            L +    S     T +  + GR G L+ A ++   + ++    ++ A++ A   +G   
Sbjct: 556 HLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNG--- 612

Query: 603 LGEVAAK--WLFELEPENPGNYVLLSKL 628
           L   A K  W  + E   P     +S L
Sbjct: 613 LAGEALKLFWRMQQEGSRPDEQSFVSVL 640


>gi|449444600|ref|XP_004140062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/611 (34%), Positives = 350/611 (57%), Gaps = 9/611 (1%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           YG + + +  FD    + S  +N ++     NG+    L  F+   R   + P+  +  +
Sbjct: 95  YGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKG-RFAHFQPNISSLLL 153

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW-EH 175
           VI+A  +L     G A HG +  +GF     V N L+++Y     +  A K+F  M   +
Sbjct: 154 VIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEV-HMYFAHKLFGEMSVRN 212

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWML-KSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
            VVSW+ +I G+ +    ++  ++F  M+ ++G+ PD  +VVSVL AC  LK+I +G M+
Sbjct: 213 DVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTMV 272

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H LV    L  ++   N+L+DMY KC +V+ A   F  + E+++++W  M++ Y LN   
Sbjct: 273 HGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESH 332

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             AL L   M  EG   + +T+ ++L          + RS+H   I++  E   ++  ++
Sbjct: 333 LEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLLNSV 392

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           ID YAKCNLV+L+  VF   +KK  V W+ ++AG   NG   +A+ +F+QM  EV+ PN+
Sbjct: 393 IDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMNEEVI-PNN 451

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
            ++ +L+ A A+ A+L+Q+   H   +R G  S V++ T +ID+YSKCG +E++ + F++
Sbjct: 452 VSIMNLMEACAVSAELRQSKWAHGIAVRRGLASEVDIGTSIIDMYSKCGDIEASIRAFNQ 511

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
           IP   K++V WS +I+ + ++G    A+ LF+++ Q+G +PN VT  S L ACSHGGL++
Sbjct: 512 IP--QKNVVCWSAMISAFRINGLAHEALMLFEKIKQNGTKPNAVTALSLLSACSHGGLME 569

Query: 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP--LKPTHAVWGALL 592
           EGL  F  M++ H      +HY+CIVD+L RAG+ +EA +LI  +P  ++   ++WG LL
Sbjct: 570 EGLSFFTSMVQKHGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKEMEAGASIWGTLL 629

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
            +C  +GN+ LG  AA  + +LEP +   Y+L S LY+      D+  +R +  EKG++ 
Sbjct: 630 SSCRSYGNISLGSGAASRVLQLEPLSSAGYMLASNLYANCGLMIDSAKMRRLAKEKGVKV 689

Query: 653 APAHSLIEVRN 663
              +SL+ + +
Sbjct: 690 VAGYSLVHINS 700



 Score =  215 bits (547), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 149/534 (27%), Positives = 264/534 (49%), Gaps = 37/534 (6%)

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           +K  + +G   ++L+++  +   G    D +  P ++KAC++ ++  LG A+HG ++  G
Sbjct: 19  IKDASYSGNWQEALQLYHEIRISGAQLSDTWVLPSILKACSNTSF-NLGTAMHGCLIKQG 77

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
               T + N  I  YM +G++ +A++ FD+      VSWN ++ G F N      L    
Sbjct: 78  CQSSTSIANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLC--- 134

Query: 202 WMLK---SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           W +K   +  +P+ +S++ V+ A   LK    G   H  +        ++  N+L+ +Y 
Sbjct: 135 WFIKGRFAHFQPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYA 194

Query: 259 KCGSVNEARLVFDRMSER-DVVTWTSMINGYALNGDVRNALGLFQLMQFE-GVRPNSLTI 316
           +   +  A  +F  MS R DVV+W+ MI G+   G+      +F+ M  E G+ P+ +T+
Sbjct: 195 EV-HMYFAHKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTV 253

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
            S+L AC++L  +  G  +H   I + LE ++ V  +LIDMY+KC  V  +F+ F    +
Sbjct: 254 VSVLKACTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPE 313

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           K  + WN +L+  + N    +A+ L   M+ E  E ++ TL ++L       D  +  ++
Sbjct: 314 KNIISWNLMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLKCRSV 373

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H  +IR G+ S   +   +ID Y+KC  +E A  +F    +  KD+V WS +IAG+  +G
Sbjct: 374 HGVIIRKGYESNELLLNSVIDAYAKCNLVELARMVFD--GMNKKDVVAWSTMIAGFARNG 431

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHAC-----------SHGGLLDEGLDLFNFMLE 545
             + A+S+FK+M +  V PN V+  + + AC           +HG  +  GL        
Sbjct: 432 KPDEAISVFKQMNEE-VIPNNVSIMNLMEACAVSAELRQSKWAHGIAVRRGL-------- 482

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
                S  D  T I+D+  + G ++ +      +P K     W A++ A  I+G
Sbjct: 483 ----ASEVDIGTSIIDMYSKCGDIEASIRAFNQIPQKNV-VCWSAMISAFRING 531



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/452 (23%), Positives = 208/452 (46%), Gaps = 43/452 (9%)

Query: 194 KEALVVFDWMLKSGVE-PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
           +EAL ++  +  SG +  D   + S+L AC       +G  +H  +       + +  N+
Sbjct: 29  QEALQLYHEIRISGAQLSDTWVLPSILKACSN-TSFNLGTAMHGCLIKQGCQSSTSIANS 87

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
            +D Y+K G ++ A+  FD    +D V+W  M++G   NG +   L  F   +F   +PN
Sbjct: 88  TIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHFQPN 147

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
             ++  ++ A   L    +G + H +  +      + V+ +L+ +YA+ ++   + ++F 
Sbjct: 148 ISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEVHMY-FAHKLFG 206

Query: 373 RTS-KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADL 430
             S +   V W+ ++ G V  G   +   +FR M+ E  + P+  T+ S+L A   L D+
Sbjct: 207 EMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDI 266

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
                +H  +I  G    + V   LID+YSKC ++ SA K F EIP  +K+I+ W+++++
Sbjct: 267 SLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIP--EKNIISWNLMLS 324

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGGLLDEGLD- 538
            Y ++     A++L   MV+ G + +EVT  + L               HG ++ +G + 
Sbjct: 325 AYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYES 384

Query: 539 ---LFNFMLENHQTCSRAD---------------HYTCIVDLLGRAGRLDEAYDLIRTM- 579
              L N +++ +  C+  +                ++ ++    R G+ DEA  + + M 
Sbjct: 385 NELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMN 444

Query: 580 -PLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
             + P +     L+ AC +   +      +KW
Sbjct: 445 EEVIPNNVSIMNLMEACAVSAELR----QSKW 472


>gi|224096616|ref|XP_002310672.1| predicted protein [Populus trichocarpa]
 gi|222853575|gb|EEE91122.1| predicted protein [Populus trichocarpa]
          Length = 551

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/543 (35%), Positives = 320/543 (58%), Gaps = 3/543 (0%)

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           ++ C +   +K G  +H ++L  GF  +  +   LI  Y   G+  +ARKVFD M E +V
Sbjct: 4   LQLCIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTV 63

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSW+  ISGY +N   ++AL+VF  ML++G + +  +  SVL AC  L+ ++ G  I   
Sbjct: 64  VSWSAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGC 123

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +   R   N+   +AL+D++ KCG + +A  +F  M ERDVV+W ++I  YA+ G   ++
Sbjct: 124 LEKSRFASNLIVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGDS 183

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
             +F+ M  EG+ P+  T GS+L A      + R   +H   I+      + +  +LID 
Sbjct: 184 FRMFRSMMQEGMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGSLIDA 243

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG-LARKAVELFRQMLVEVVEPNDAT 416
           YAKC  +  +  ++     K  +   A++ G   +   + KA++LF+++    ++ +D  
Sbjct: 244 YAKCESLASAHCLYKSMPMKDMISCTALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVI 303

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           L S+    A ++ L     IH   ++      V +   LID+Y+K G ++ A++ F+E+ 
Sbjct: 304 LCSMFNICANISSLSVGRQIHALALKCKPTYDVAMGNALIDMYAKSGEIKDANRAFNEM- 362

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
            ++K+++ W+ +I GYG HGHG  A++LFK+M   G++PN++TF S L AC+H GL  EG
Sbjct: 363 -EEKNVISWTSLITGYGSHGHGHEAIALFKKMEYEGLKPNDITFLSLLFACNHCGLTGEG 421

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
            + FN M+  +    RA+H++C+VDL  R G L+EAY+LI  M +KP  ++WGA+LGAC 
Sbjct: 422 WECFNNMISKYNILPRAEHFSCMVDLFARGGLLEEAYNLINKMNIKPNASLWGAILGACY 481

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           I+GN+ L E AA  LF+++PEN  NYV+L+ +Y+A   W +A  +R +M+E+ L+KAP +
Sbjct: 482 IYGNMPLAEEAAIHLFKMDPENSVNYVVLADIYAAAGSWDNAWKMRKLMEERNLKKAPGY 541

Query: 657 SLI 659
           S I
Sbjct: 542 SFI 544



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 143/500 (28%), Positives = 263/500 (52%), Gaps = 12/500 (2%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSE 72
           +K +Q    TK+      +H  I+T+G     HL + L+  Y   G   + R +FD M E
Sbjct: 1   MKSLQLCIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPE 60

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           R+   ++  +  Y+QNG   D+L +FL MLR G +  + +TY  V++ACT L   + G+ 
Sbjct: 61  RTVVSWSAQISGYSQNGCYQDALLVFLDMLRAG-FKANQFTYGSVLRACTGLRCLQRGMQ 119

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           + G +  + F  +  V + L+ ++   G+++ A  +F  M E  VVSWN +I  Y    +
Sbjct: 120 IQGCLEKSRFASNLIVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGF 179

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
           + ++  +F  M++ G+ PD  +  SVL A G   ++     IH+L+     G +I+   +
Sbjct: 180 SGDSFRMFRSMMQEGMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGS 239

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN-ALGLFQLMQFEGVRP 311
           L+D Y KC S+  A  ++  M  +D+++ T+++ GYA + +  + AL LF+ +Q   ++ 
Sbjct: 240 LIDAYAKCESLASAHCLYKSMPMKDMISCTALMTGYARDSNYSSKALDLFKEIQQMHMKI 299

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           + + + S+ + C+++  L  GR +HA  +K     +V +  ALIDMYAK   +K + + F
Sbjct: 300 DDVILCSMFNICANISSLSVGRQIHALALKCKPTYDVAMGNALIDMYAKSGEIKDANRAF 359

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
               +K  + W +++ G   +G   +A+ LF++M  E ++PND T  SLL A        
Sbjct: 360 NEMEEKNVISWTSLITGYGSHGHGHEAIALFKKMEYEGLKPNDITFLSLLFACNHCGLTG 419

Query: 432 QAMNIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
           +       +I +Y  L   E  + ++D++++ G LE A+ + +++ IK  +  +W  I+ 
Sbjct: 420 EGWECFNNMISKYNILPRAEHFSCMVDLFARGGLLEEAYNLINKMNIK-PNASLWGAILG 478

Query: 491 GYGMHGH----GETAVSLFK 506
              ++G+     E A+ LFK
Sbjct: 479 ACYIYGNMPLAEEAAIHLFK 498


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/615 (34%), Positives = 324/615 (52%), Gaps = 66/615 (10%)

Query: 111 NYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD 170
           NY Y  ++K C +   +     LH  +L T    +TF+ N LI  Y   G +  A  VFD
Sbjct: 6   NY-YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFD 64

Query: 171 AMWEHSVVSWNTL-------------------------------ISGYFKNAYAKEALVV 199
            + + ++ SWNT+                               ISGY       +A+ V
Sbjct: 65  HIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRV 124

Query: 200 FDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           +  MLK + +  +  +  ++L  C   + +++GR I+  +     G ++   + LVDMY 
Sbjct: 125 YKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYT 184

Query: 259 KCGSVNEARLVFDRMSERDVV-------------------------------TWTSMING 287
           K G + +A+  FD M ER+VV                               +WT MI G
Sbjct: 185 KLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITG 244

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
              NG  R AL +F+ M+  G   +  T GS+L+AC SL  L  G+ +HA+ I+ + +  
Sbjct: 245 LMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDN 304

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           V V +AL+DMY+KC  +K +  VF R  +K  + W A+L G   NG + +AV++F +M  
Sbjct: 305 VFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQR 364

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
             VEP+D TL S++ + A LA L++    HC  +  G +S + VS  LI +Y KCGS E+
Sbjct: 365 NGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTEN 424

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           +H++F+E+ I+D+  V W+ ++AGY   G     + LF+ M+  G++P+ VTF   L AC
Sbjct: 425 SHRLFTEMNIRDE--VSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSAC 482

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           S  GL+++GL  F  M++ H      DH TCI+DLLGRAGRL+EA + I  MP  P    
Sbjct: 483 SRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVG 542

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           W  LL +C +HG++E+G+ AA  L  LEP+NP +YVLLS LY++  +W     +R  M +
Sbjct: 543 WATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRD 602

Query: 648 KGLRKAPAHSLIEVR 662
           K +RK P +S I+ +
Sbjct: 603 KRVRKEPGYSWIKYK 617



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 142/480 (29%), Positives = 239/480 (49%), Gaps = 33/480 (6%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           S+    G +S ++ +F+ M  R    +N  +  YA  G+  D+++++  ML+    N + 
Sbjct: 79  SVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNR 138

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T+  ++  C+      LG  ++G++L  GF  D FVG+ L+ MY   G +  A++ FD 
Sbjct: 139 ITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDE 198

Query: 172 MWEHSVV-------------------------------SWNTLISGYFKNAYAKEALVVF 200
           M E +VV                               SW  +I+G  +N   +EAL +F
Sbjct: 199 MPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMF 258

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
             M  +G   D  +  SVL ACG L  +  G+ IH  V       N+   +ALVDMY KC
Sbjct: 259 REMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKC 318

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
            S+  A  VF RM +++V++WT+M+ GY  NG    A+ +F  MQ  GV P+  T+GS++
Sbjct: 319 RSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVI 378

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           S+C++L  L+ G   H   +   L   + V  ALI +Y KC   + S ++F   + +  V
Sbjct: 379 SSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEV 438

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            W A+LAG    G A + + LF +ML   ++P+  T   +L A +    +++ +     +
Sbjct: 439 SWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESM 498

Query: 441 IR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           I+ +G + +V+  T +ID+  + G LE A    + +P    D+V W+ +++   +HG  E
Sbjct: 499 IKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCH-PDVVGWATLLSSCRVHGDME 557


>gi|356565618|ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 619

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 226/658 (34%), Positives = 352/658 (53%), Gaps = 58/658 (8%)

Query: 13  THLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHL-RSSLVRAYGHVSNVR---ILFD 68
           TH    L+Q   A K++   KQLH  I+ +G    H   + L++ Y   +++R    L  
Sbjct: 5   THSFNSLLQ---ACKTLNQAKQLHHRILLTGSHHNHFFVTKLIQIYADSNDLRSAVTLLH 61

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
           ++S  + F + +++  ++++G  H  ++ +  + R G   PD Y +P V+KAC  L+   
Sbjct: 62  QISHPNVFAFTSILSFHSRHGLGHQCIQTYAELRRNGVV-PDGYVFPKVLKACAQLSRFG 120

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
            G  +H  V++ G + +  V N ++ MY   G+V +AR+VFD M E  V SWN+++SGY 
Sbjct: 121 SGRGVHKDVVVFGEESNLQVRNSVLDMYSKCGDVGSARQVFDEMSERDVFSWNSMMSGYV 180

Query: 189 KNAYAKEALVVFDWMLKS--GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
            N    +A+ V   M K   G EPD                                   
Sbjct: 181 WNGLPHKAVEVLGVMKKDGCGCEPD----------------------------------- 205

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           +  WN ++D Y + G   EA  VF  + + +V++WT +I+GYA  G    +LG+F+ M  
Sbjct: 206 VVTWNTVMDAYCRMGQCCEASRVFGEIEDPNVISWTILISGYAGVGRHDVSLGIFRQMVN 265

Query: 307 EG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI----VETALIDMYAKC 361
            G V P+   +  +L +C  L  L  G+ +H + +K  + C  +       AL+ +YA  
Sbjct: 266 VGMVSPDVDALSGVLVSCRHLGALASGKEIHGYGLK--IMCGDVFYRSAGAALLMLYAGW 323

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
             +  +  VF R  K   V WNA++ G V  GL   A++ FR+M    V  +  T++S+L
Sbjct: 324 GRLDCADNVFWRMDKSDVVTWNAMIFGLVDVGLVDLALDCFREMQGRGVGIDGRTISSIL 383

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
           P    + DL+    IH Y+ +  F  V+ V   LI +YS  G +  A+ +FS +    +D
Sbjct: 384 P----VCDLRCGKEIHAYVRKCNFSGVIPVYNALIHMYSIRGCIAYAYSVFSTMVA--RD 437

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           +V W+ II G+G HG G+TA+ L +EM  SGV+P+ VTF+ AL ACSH GL++EG++LF 
Sbjct: 438 LVSWNTIIGGFGTHGLGQTALELLQEMSGSGVRPDLVTFSCALSACSHSGLVNEGIELFY 497

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            M ++       +H++C+VD+L RAGRL++A+  I  MP +P + VWGALL AC  H N+
Sbjct: 498 RMTKDFSMTPAREHFSCVVDMLARAGRLEDAFHFINQMPQEPNNHVWGALLAACQEHQNI 557

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
            +G++AA+ L  LEP   G+YV LS +YS   RW DA  VR +MD  GL K   HSL+
Sbjct: 558 SVGKLAAEKLISLEPHEAGHYVTLSNIYSRAGRWDDAARVRKMMDGHGLLKPSGHSLV 615


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/641 (32%), Positives = 341/641 (53%), Gaps = 7/641 (1%)

Query: 27  KSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVM 82
           +S+   +QLH  ++  G    T++ ++LV  Y H+ ++     +F  MS+R +  YNT++
Sbjct: 285 ESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLI 344

Query: 83  KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
              +Q G    ++++F  M +L    PD+ T   ++ AC+       G  LH      GF
Sbjct: 345 NGLSQCGYGEKAMELFKRM-QLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGF 403

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
             +  +   L+ +Y    +++ A   F      +VV WN ++  Y      + +  +F  
Sbjct: 404 ASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQ 463

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           M    + P+  +  S+L  C  L ++E+G  IH  +       N    + L+DMY K G 
Sbjct: 464 MQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGK 523

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           ++ A  +  R + +DVV+WT+MI GY        AL  F+ M   G+R + + + + +SA
Sbjct: 524 LDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSA 583

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           C+ L  LK G+ +HA         ++  + AL+ +Y+KC  ++ ++  F +T     + W
Sbjct: 584 CAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAW 643

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           NA+++G   +G   +A+ +F +M  E ++ N+ T  S + A +  A+++Q   +H  + +
Sbjct: 644 NALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITK 703

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
            G+ S  EV   +I +Y+KCGS+  A K F E+ +K++  V W+ +I  Y  HG G  A+
Sbjct: 704 TGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNE--VSWNAMINAYSKHGFGSEAL 761

Query: 503 SLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDL 562
             F +M+ S V+PN VT    L ACSH GL+D+G++ F  M   +    + +HY C+VD+
Sbjct: 762 DSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDM 821

Query: 563 LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNY 622
           L RAG L  A D I  MP++P   VW  LL ACV+H N+E+GE AA  L ELEPE+   Y
Sbjct: 822 LTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATY 881

Query: 623 VLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           VLLS LY+  R+W   +  R  M EKG++K P  S IEV+N
Sbjct: 882 VLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKN 922



 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 195/620 (31%), Positives = 300/620 (48%), Gaps = 48/620 (7%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH---LRSSLVRAY--- 57
           P+H TL       +K         S+   ++LH+ I+  G  F +   L   L+  Y   
Sbjct: 65  PNHQTLKWLLEGCLK------TNGSLDEGRKLHSQILKLG--FDNNACLSEKLLDFYLFK 116

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +     +FDEM ER+ F +N ++K  A    S     +F G +      P+  T+  V
Sbjct: 117 GDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLF-GRMVNENVTPNEGTFSGV 175

Query: 118 IKACTDLAWRKLGIA------LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
           ++AC     R   +A      +H R++  G    T V N LI +Y   G V  AR+VFD 
Sbjct: 176 LEAC-----RGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDG 230

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           ++     SW  +ISG  KN    EA+ +F  M   G+ P   +  SVL AC  ++ +E+G
Sbjct: 231 LYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIG 290

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
             +H LV       +    NALV +Y   GS+  A  +F  MS+RD VT+ ++ING +  
Sbjct: 291 EQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQC 350

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G    A+ LF+ MQ +G+ P+S T+ SL+ ACSS   L  G+ LHA+T K        +E
Sbjct: 351 GYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIE 410

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
            AL+++YAKC+ ++ +   F  T  +  V WN +L         R +  +FRQM +E + 
Sbjct: 411 GALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIV 470

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           PN  T  S+L     L DL+    IH  +I+  F     V + LID+Y+K G L++A  I
Sbjct: 471 PNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDI 530

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
              I    KD+V W+ +IAGY  +   + A++ F++M+  G++ +EV  T+A+ AC+   
Sbjct: 531 L--IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQ 588

Query: 532 LLDEGLDLFNFMLENHQTC-----SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
            L EG  +      + Q C     S       +V L  + G ++EAY     +  + T A
Sbjct: 589 ALKEGQQI------HAQACVSGFSSDLPFQNALVTLYSKCGNIEEAY-----LAFEQTEA 637

Query: 587 ----VWGALLGACVIHGNVE 602
                W AL+      GN E
Sbjct: 638 GDNIAWNALVSGFQQSGNNE 657



 Score =  258 bits (660), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 176/633 (27%), Positives = 296/633 (46%), Gaps = 17/633 (2%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+HA II  G    T + + L+  Y   G V   R +FD +  +    +  ++   ++N
Sbjct: 190 EQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKN 249

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
               +++++F  M  LG   P  Y +  V+ AC  +   ++G  LHG VL  GF  DT+V
Sbjct: 250 ECEVEAIRLFCDMYVLG-IMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYV 308

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+++Y + G + +A  +F  M +   V++NTLI+G  +  Y ++A+ +F  M   G+
Sbjct: 309 CNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGL 368

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           EPD  ++ S++ AC     +  G+ +H          N     AL+++Y KC  +  A  
Sbjct: 369 EPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALN 428

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
            F      +VV W  M+  Y L  D+RN+  +F+ MQ E + PN  T  S+L  C  L  
Sbjct: 429 YFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGD 488

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L+ G  +H+  IK + +    V + LIDMYAK   +  ++ +  R + K  V W  ++AG
Sbjct: 489 LELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAG 548

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
                   KA+  FRQML   +  ++  L + + A A L  L++   IH      GF S 
Sbjct: 549 YTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSD 608

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           +     L+ +YSKCG++E A+  F +    D   + W+ +++G+   G+ E A+ +F  M
Sbjct: 609 LPFQNALVTLYSKCGNIEEAYLAFEQTEAGDN--IAWNALVSGFQQSGNNEEALRVFARM 666

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
            + G+  N  TF SA+ A S    + +G  +   + +     S  +    I+ +  + G 
Sbjct: 667 NREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYD-SETEVCNAIISMYAKCGS 725

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN-PGNYVLLSK 627
           + +A      + +K     W A++ A   HG    G  A     ++   N   N+V L  
Sbjct: 726 ISDAKKQFLELSMK-NEVSWNAMINAYSKHG---FGSEALDSFDQMIHSNVRPNHVTLVG 781

Query: 628 LYSAVRRW----KDAENVRDVMDEKGLRKAPAH 656
           + SA        K  E    +  E GL   P H
Sbjct: 782 VLSACSHIGLVDKGIEYFESMNTEYGLAPKPEH 814



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 189/450 (42%), Gaps = 57/450 (12%)

Query: 201 DWMLKSGVEPDCASVVSVLPAC----GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
           D +   G+ P+  ++  +L  C    G L E   GR +H  +       N      L+D 
Sbjct: 56  DSVENCGIRPNHQTLKWLLEGCLKTNGSLDE---GRKLHSQILKLGFDNNACLSEKLLDF 112

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y+  G ++ A  VFD M ER + TW  MI   A          LF  M  E V PN  T 
Sbjct: 113 YLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTF 172

Query: 317 GSLLSACSSLYYLKRGRS--------LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
             +L AC       RG S        +HA  I Q L    IV   LID+Y++   V  + 
Sbjct: 173 SGVLEAC-------RGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRAR 225

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           +VF     K    W A+++G   N    +A+ LF  M V  + P     +S+L A   + 
Sbjct: 226 RVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 285

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            L+    +H  +++ GF S   V   L+ +Y   GSL SA  IFS +    +D V ++ +
Sbjct: 286 SLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMS--QRDAVTYNTL 343

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF------ 542
           I G    G+GE A+ LFK M   G++P+  T  S + ACS  G L  G  L  +      
Sbjct: 344 INGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGF 403

Query: 543 ---------MLENHQTCSRADH---------------YTCIVDLLGRAGRLDEAYDLIRT 578
                    +L  +  CS  +                +  ++   G    L  ++ + R 
Sbjct: 404 ASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQ 463

Query: 579 MPLK---PTHAVWGALLGACVIHGNVELGE 605
           M ++   P    + ++L  C+  G++ELGE
Sbjct: 464 MQIEEIVPNQYTYPSILKTCIRLGDLELGE 493


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/620 (34%), Positives = 338/620 (54%), Gaps = 63/620 (10%)

Query: 101 MLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG 160
           MLR G    D++T P V+KAC +L   + G A HG +   GF+ + F+ N L+AMY   G
Sbjct: 1   MLRAGT-RLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG 59

Query: 161 EVKAARKVFDAMWEH---SVVSWNTLISGYFKNAYAKEALVVFDWML------KSGVEPD 211
            ++ A  +FD + +     V+SWN+++S + K++ A  AL +F  M        +    D
Sbjct: 60  SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 119

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFD 271
             S+V++LPACG LK +   + +H          ++   NAL+D Y KCG +  A  VF+
Sbjct: 120 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFN 179

Query: 272 RMSERDVVTWTSMINGYALNGDVR-----------------------------------N 296
            M  +DVV+W +M+ GY+ +G+ +                                    
Sbjct: 180 MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHE 239

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL----------EC 346
           AL +F+ M F G  PN +TI S+LSAC+SL    +G  +HA+++K  L          + 
Sbjct: 240 ALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDE 299

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFART--SKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
           +++V  ALIDMY+KC   K +  +F      ++  V W  ++ G    G +  A++LF +
Sbjct: 300 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 359

Query: 405 MLVEV--VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL--SVVEVSTGLIDIYS 460
           M+ E   V PN  T++ +L A A LA ++    IH Y++R+     S   V+  LI++YS
Sbjct: 360 MISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYS 419

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           KCG +++A  +F  +    K  + W+ ++ GYGMHG G  A+ +F +M ++G  P+++TF
Sbjct: 420 KCGDVDTARHVFDSM--SQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITF 477

Query: 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
              L+ACSH G++D+GL  F+ M  ++    RA+HY   +DLL R GRLD+A+  ++ MP
Sbjct: 478 LVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMP 537

Query: 581 LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAEN 640
           ++PT  VW ALL AC +H NVEL E A   L E+  EN G+Y L+S +Y+   RWKD   
Sbjct: 538 MEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVAR 597

Query: 641 VRDVMDEKGLRKAPAHSLIE 660
           +R +M + G++K P  S ++
Sbjct: 598 IRHLMKKSGIKKRPGCSWVQ 617



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 138/268 (51%), Gaps = 10/268 (3%)

Query: 64  RILFDE--MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN--PDNYTYPIVIK 119
           R +FD+  + ER+   +  ++  +AQ G S+D+LK+F+ M+    Y   P+ YT   ++ 
Sbjct: 321 RSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMIS-EPYGVAPNAYTISCILM 379

Query: 120 ACTDLAWRKLGIALHGRVLI-TGFDMDT-FVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           AC  LA  ++G  +H  VL    +D    FV NCLI MY   G+V  AR VFD+M + S 
Sbjct: 380 ACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSA 439

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHE 236
           +SW ++++GY  +    EAL +FD M K+G  PD  + + VL AC +   ++ G      
Sbjct: 440 ISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDS 499

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEA-RLVFDRMSERDVVTWTSMINGYALNGDVR 295
           + A   L      +   +D+  + G +++A + V D   E   V W ++++   ++ +V 
Sbjct: 500 MSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVE 559

Query: 296 NAL-GLFQLMQFEGVRPNSLTIGSLLSA 322
            A   L +L++       S T+ S + A
Sbjct: 560 LAEHALNKLVEMNAENDGSYTLISNIYA 587



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 9/162 (5%)

Query: 33  KQLHAFII------TSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYA 86
           KQ+HA+++      +S     +   ++    G V   R +FD MS++S+  + ++M  Y 
Sbjct: 391 KQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYG 450

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT-GFDMD 145
            +G   ++L +F  M + G + PD+ T+ +V+ AC+       G++    +    G    
Sbjct: 451 MHGRGSEALDIFDKMRKAG-FVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPR 509

Query: 146 TFVGNCLIAMYMNFGEV-KAARKVFDAMWEHSVVSWNTLISG 186
                  I +   FG + KA + V D   E + V W  L+S 
Sbjct: 510 AEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSA 551


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/621 (33%), Positives = 347/621 (55%), Gaps = 8/621 (1%)

Query: 49  LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           L S+L+  Y   G       +F+ M+      +  ++  + + G+   +L+++  M++ G
Sbjct: 153 LGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTG 212

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
              P+ +T+  ++ A + L     G  +H  +++   +++  +   L+ MY     ++ A
Sbjct: 213 -VAPNEFTFVKLLAASSFLGL-NYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDA 270

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
            KV     E+ V  W  +ISG+ ++   +EA+  F  M  SGV P+  +   +L AC  +
Sbjct: 271 VKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSI 330

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS-VNEARLVFDRMSERDVVTWTSM 284
             +++G+ IH  V    L  +++  N+LVDMY+KC + + +A   F  ++  +V++WTS+
Sbjct: 331 LALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSL 390

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           I G++ +G    ++ +F  MQ  GVRPNS T+ ++L AC ++  L + R LH + IK N 
Sbjct: 391 IAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNA 450

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
           + +V+V  AL+D YA   +V  ++ V +    +  + + ++       G    A+ +   
Sbjct: 451 DNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITH 510

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           M  + V  +  +L S L A A +  ++    +HCY ++ G  S + VS GL+D+Y KCG 
Sbjct: 511 MNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGC 570

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           +  AH+ F EI   + D V W+ +I G   +GH  +A+S F++M  +GV+P+++T    L
Sbjct: 571 IHDAHRSFLEI--TEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVL 628

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
           +ACSHGGL+D GLD F  M E H    + DHY C+VDLLGRAGRL+EA ++I TMP KP 
Sbjct: 629 YACSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPD 688

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
             ++  LLGAC +HGN+ LGE  A+   EL+P +P  YVLL+ LY    R +  E  R +
Sbjct: 689 ALIYKTLLGACKLHGNIPLGEHMARQGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRM 748

Query: 645 MDEKGLRKAPAHSLIEVRNIL 665
           M E+G+RK P  S +E RN++
Sbjct: 749 MRERGVRKNPGQSWMEERNMV 769



 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 164/598 (27%), Positives = 303/598 (50%), Gaps = 15/598 (2%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAYGH---VSNVR 64
           K  + ++K +  +  ++S+     +H+ II  G    +F  L ++L+  YG    V+  R
Sbjct: 13  KIEYSLLKDIVSFCNSRSVRDGICIHSPIIKMGFQEDMF--LSNNLLSLYGKCFGVAEAR 70

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
            LFDEM  R    +  +M  Y + G   ++L++F  ML  GEY P+ +T    +++C+ L
Sbjct: 71  QLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEY-PNEFTLSTALRSCSAL 129

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
                G      V  +GFD +  +G+ LI  Y   G  + A +VF+ M    +VSW  ++
Sbjct: 130 REFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMV 189

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           S + +     +AL ++  M+++GV P+  + V +L A  +L  +  G+++H  +   R+ 
Sbjct: 190 SSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLG-LNYGKLVHAHLMMWRIE 248

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            N+    ALVDMY KC S+ +A  V     E DV  WT++I+G+  +   R A+  F  M
Sbjct: 249 LNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEM 308

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC-NL 363
           +  GV PN+ T   +L+ACSS+  L  G+ +H+  +   LE +V V  +L+DMY KC N+
Sbjct: 309 ETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNM 368

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           ++ + + F   +    + W +++AG   +GL  +++++F  M    V PN  TL+++L A
Sbjct: 369 IEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGA 428

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
              +  L Q   +H Y+I+    + V V   L+D Y+  G ++ A  + S   +K +D++
Sbjct: 429 CGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSM--MKHRDVI 486

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            ++ +       G+ E A+++   M +  V+ +  +  S L A +   +++ G  L  + 
Sbjct: 487 TYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYS 546

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
           +++    S       +VDL G+ G + +A+     +  +P    W  L+     +G+V
Sbjct: 547 VKS-GLGSWISVSNGLVDLYGKCGCIHDAHRSFLEIT-EPDAVSWNGLIFGLASNGHV 602


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/556 (34%), Positives = 316/556 (56%), Gaps = 37/556 (6%)

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
           ++ + +G  LI + +N G+   AR++FD + +    + +TLIS    +  + EA+ ++  
Sbjct: 95  NIPSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSS 154

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           + + G++PD    ++   AC    +    + +H+      +  ++   NAL+  Y KC  
Sbjct: 155 LQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKC 214

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           V  AR VFD +  RDVV+WTS+ + Y   G  R  + +F+ M + GV+PN +T+ S+L A
Sbjct: 215 VEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPA 274

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS--------------- 367
           C+ L  LK G+ +H + ++  +   + V +AL+ +YAKC  V+ +               
Sbjct: 275 CAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSW 334

Query: 368 ----------------FQVFARTSKK----KTVPWNAILAGCVHNGLARKAVELFRQMLV 407
                           F +F + S+         WNA++ GC+ NG + +AVE+FR+M  
Sbjct: 335 NGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQK 394

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
              +PN+ T++S+LPA +   +L+    IHCY+ R+  +  +  +T L+ +Y+KCG L  
Sbjct: 395 MGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNL 454

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           +  +F  +  + KD+V W+ +I    MHG+G+ A+ LF +M+ S VQPN VTFT  L  C
Sbjct: 455 SRNVFDMM--RRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGC 512

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           SH  L++EG+ +FN M  +H     A+HY+C+VD+  RAGRL+EAY  I+ MP++PT + 
Sbjct: 513 SHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASA 572

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           WGALL AC ++ NVEL +++AK LFE+EP NPGNYV L  +    + W +A  VR +M E
Sbjct: 573 WGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKE 632

Query: 648 KGLRKAPAHSLIEVRN 663
           +G+ K P  S ++V N
Sbjct: 633 RGITKTPGCSWLQVGN 648



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 152/513 (29%), Positives = 246/513 (47%), Gaps = 51/513 (9%)

Query: 47  THLRSSLVRA---YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR 103
           +HL   L+R     G  +  R LFD + +      +T++     +G S++++K++  +  
Sbjct: 98  SHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQE 157

Query: 104 LGEYNPDNYTYPIVIKACTDLAWRKLGIA-LHGRVLITGFDMDTFVGNCLIAMYMNFGEV 162
            G   PD   +    KAC  ++   L +  +H      G   D FVGN LI  Y     V
Sbjct: 158 RG-IKPDMPVFLAAAKACA-VSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCV 215

Query: 163 KAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC 222
           + AR+VFD +    VVSW +L S Y K  + ++ + VF  M  SGV+P+  +V S+LPAC
Sbjct: 216 EGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPAC 275

Query: 223 GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVV--- 279
             LK+++ G+ IH       +  N+   +ALV +Y KC SV EAR+VFD M  RDVV   
Sbjct: 276 AELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWN 335

Query: 280 --------------------------------TWTSMINGYALNGDVRNALGLFQLMQFE 307
                                           TW ++I G   NG    A+ +F+ MQ  
Sbjct: 336 GVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKM 395

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           G +PN +TI S+L ACS    L+ G+ +H +  +     ++   TAL+ MYAKC  + LS
Sbjct: 396 GFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLS 455

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
             VF    +K  V WN ++     +G  ++A+ LF +ML+  V+PN  T   +L   +  
Sbjct: 456 RNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHS 515

Query: 428 ADLQQAMNIHCYLIRYGFLSVVEVSTG----LIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
             +++ + I   +   G   +VE        ++DIYS+ G L  A+K    +P+ +    
Sbjct: 516 RLVEEGVQIFNSM---GRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPM-EPTAS 571

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
            W  ++A   ++ + E A    K++ +  ++PN
Sbjct: 572 AWGALLAACRVYKNVELAKISAKKLFE--IEPN 602


>gi|357116286|ref|XP_003559913.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 692

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/658 (31%), Positives = 349/658 (53%), Gaps = 27/658 (4%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLR-----SSLVRAY---GHVSNVRILFDEM 70
           L+ +  +  ++A  ++LHA ++  G    H R     + LV AY   G       + D M
Sbjct: 45  LLLRLRSCPTLAEARRLHAALLVGG---HHRRGAVLAAQLVHAYARLGEAGRALSVLDGM 101

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
             R+SF +N  +K    +G   ++L+ +  M+R G    D +TYP VIKAC       LG
Sbjct: 102 PMRNSFAWNAAIKGLVDSGQFAEALETYWAMVRDGSVAADGFTYPPVIKACA-----ALG 156

Query: 131 IALHGRVLITGFDMDT---------FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWN 181
           +   GR++    + D          FV   L+ M+   G +  AR VF++M E  + +W 
Sbjct: 157 VVEQGRMVRENVEADVVRGVVAPSVFVQCALVDMFAKCGCLGEARSVFESMLERDLAAWT 216

Query: 182 TLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG 241
            +I G        +A+ +F  M   G   D   + +V+PACG  KE+  G ++H      
Sbjct: 217 AMIGGAVHAGDWLDAMSLFSRMRSEGFLADSVIIATVIPACGRAKELRTGMVLHGCAVRC 276

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
            +G +    NALVDMY KCG +  A  VF  +  +DVV+W+++I GY+ NG    ++ LF
Sbjct: 277 GVGDDTCVSNALVDMYCKCGCLGMADRVFWSIGFKDVVSWSTLIAGYSQNGKDHVSVNLF 336

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
             M   G++PNS T+ S+L + S +   + G+ +H ++++   +    + +A ID Y++ 
Sbjct: 337 TEMVTAGLKPNSNTMASILPSLSEMKLFRHGKEIHGFSLRNGFDQSKFLGSAFIDFYSRQ 396

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
             ++ +  V     K+  V WN+++AG   NG    A+  FR +      P+  T+ S+L
Sbjct: 397 GSIREAEIVLELMPKRDLVIWNSMVAGYAVNGNTDSALCAFRALQKVGFRPDHVTVVSVL 456

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
           P     + L Q   +H Y++R+   SV  VS  LID+Y KC  LE   +IF    + D+D
Sbjct: 457 PVCNHHSRLIQGKELHAYVVRHYMSSVCSVSNALIDMYCKCCCLEKGKEIFQ--LVTDRD 514

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
              ++ +I+ +G HGH + A+ LF  M + G+ P++VTF + L +CSH GL+++GL  ++
Sbjct: 515 TATYNTLISSFGKHGHEDEAIMLFDLMKRDGIAPDKVTFVALLSSCSHAGLIEKGLHFYD 574

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            ML+++      +HY+C+VDL  R+G+LD+A+  + ++  +    V G LLGAC +H  +
Sbjct: 575 IMLQDYNISPGKEHYSCVVDLYSRSGKLDDAWKFVSSLQDEAEIDVLGCLLGACRVHNRM 634

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           ++ E+ AK +FE  P +PG ++LLS +Y+    W     +R +++ + L+    +SLI
Sbjct: 635 DIAELVAKRIFEQNPSDPGYHILLSNIYANAGMWSHVTRIRTMIENRSLKNKTGNSLI 692


>gi|224107543|ref|XP_002314516.1| predicted protein [Populus trichocarpa]
 gi|222863556|gb|EEF00687.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/546 (37%), Positives = 317/546 (58%), Gaps = 12/546 (2%)

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           KL    H R+L  GF  + F+   LI+ Y  FG    +R VFD++   SV  WN+LI+G+
Sbjct: 44  KLTQQCHARILSLGFTQNPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNSLINGF 103

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            KN    EA   F  M   GV  D  ++ ++   C  + ++  G++IH          ++
Sbjct: 104 VKNRAYNEAFGWFYQMCCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTGFVLDV 163

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV---RNALGLFQLM 304
              N+L+ MY KCG   E   +FD M ER+V +W  +++GYA +GD    +   G  + M
Sbjct: 164 IVANSLMSMYSKCGGFGECLKLFDEMPERNVGSWNVILSGYADSGDRNFDKEVSGFVKDM 223

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKR--GRSLHAWTIKQNLE----CEVIVETALIDMY 358
           Q EG++P++ T+ SLL+ C+  +  KR  GR LH + ++  L      EV +   LIDMY
Sbjct: 224 QIEGLKPDAFTVSSLLTLCNG-HMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCLIDMY 282

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV-EVVEPNDATL 417
           ++ N V +  +VF R   +    W A++ G V NG   + + LF +M V + VEPN  +L
Sbjct: 283 SRSNRVDVGRRVFDRMECRNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEPNKVSL 342

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            S+LPA + +A L     IH Y IR  F + V +   LID+YSKCGSL+ A ++F E   
Sbjct: 343 VSVLPACSAVAGLTGVKQIHGYAIRKQFNNDVSLCNALIDMYSKCGSLDHAKQVF-EFGS 401

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
             +D + WS +I+GYG+HG GE AV ++ +M+Q G +P+ +T    L ACS  GL+DEGL
Sbjct: 402 FRRDPISWSSMISGYGLHGKGEEAVFVYNKMLQLGNKPDMITIVGVLSACSRAGLVDEGL 461

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
            ++   +  ++     +   C+VD+LGR+G+L +A D I+TMP++P+ +VWGA++ A +I
Sbjct: 462 CIYKSAINKYRIKPTVEICACVVDMLGRSGQLGQALDYIKTMPMEPSPSVWGAVVSASII 521

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           HGN E+ ++A ++L +LEPENP NYV LS L+++ RRW     VR +M ++ L K P  S
Sbjct: 522 HGNSEMQDLAYRFLVQLEPENPSNYVSLSNLHASSRRWDVVSEVRTMMKDRCLTKTPGCS 581

Query: 658 LIEVRN 663
            I + N
Sbjct: 582 WISINN 587



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 160/522 (30%), Positives = 270/522 (51%), Gaps = 26/522 (4%)

Query: 27  KSIAGTKQLHAFIITSGPLFTH---LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNT 80
           KS+  T+Q HA I++ G  FT    L + L+ AY   G  +  R++FD +  +S +L+N+
Sbjct: 41  KSLKLTQQCHARILSLG--FTQNPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNS 98

Query: 81  VMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT 140
           ++  + +N A +++   F  M   G    D+YT   + K C ++     G  +HG+ L T
Sbjct: 99  LINGFVKNRAYNEAFGWFYQMCCRGVL-LDDYTLATMSKVCHEIGDLNAGKLIHGKSLKT 157

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA---YAKEAL 197
           GF +D  V N L++MY   G      K+FD M E +V SWN ++SGY  +    + KE  
Sbjct: 158 GFVLDVIVANSLMSMYSKCGGFGECLKLFDEMPERNVGSWNVILSGYADSGDRNFDKEVS 217

Query: 198 VVFDWMLKSGVEPDCASVVSVLPAC-GYLKEIEMGRMIH------ELVAGGRLGKNIAAW 250
                M   G++PD  +V S+L  C G++ + + GR +H      EL  G   G  +   
Sbjct: 218 GFVKDMQIEGLKPDAFTVSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGS--GTEVHLG 275

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF-EGV 309
             L+DMY +   V+  R VFDRM  R+V  WT+MING+  NG +   L LF  MQ  +GV
Sbjct: 276 CCLIDMYSRSNRVDVGRRVFDRMECRNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGV 335

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
            PN +++ S+L ACS++  L   + +H + I++    +V +  ALIDMY+KC  +  + Q
Sbjct: 336 EPNKVSLVSVLPACSAVAGLTGVKQIHGYAIRKQFNNDVSLCNALIDMYSKCGSLDHAKQ 395

Query: 370 VFARTS-KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           VF   S ++  + W+++++G   +G   +AV ++ +ML    +P+  T+  +L A +   
Sbjct: 396 VFEFGSFRRDPISWSSMISGYGLHGKGEEAVFVYNKMLQLGNKPDMITIVGVLSACSRAG 455

Query: 429 DLQQAMNIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
            + + + I+   I +Y     VE+   ++D+  + G L  A      +P+ +    VW  
Sbjct: 456 LVDEGLCIYKSAINKYRIKPTVEICACVVDMLGRSGQLGQALDYIKTMPM-EPSPSVWGA 514

Query: 488 IIAGYGMHGHGETAVSLFKEMVQ-SGVQPNEVTFTSALHACS 528
           +++   +HG+ E     ++ +VQ     P+     S LHA S
Sbjct: 515 VVSASIIHGNSEMQDLAYRFLVQLEPENPSNYVSLSNLHASS 556



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 173/386 (44%), Gaps = 12/386 (3%)

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           K +++ +  H  +      +N      L+  Y   G    +RLVFD +  + V  W S+I
Sbjct: 41  KSLKLTQQCHARILSLGFTQNPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNSLI 100

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           NG+  N     A G F  M   GV  +  T+ ++   C  +  L  G+ +H  ++K    
Sbjct: 101 NGFVKNRAYNEAFGWFYQMCCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTGFV 160

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG---LARKAVELF 402
            +VIV  +L+ MY+KC       ++F    ++    WN IL+G   +G     ++     
Sbjct: 161 LDVIVANSLMSMYSKCGGFGECLKLFDEMPERNVGSWNVILSGYADSGDRNFDKEVSGFV 220

Query: 403 RQMLVEVVEPNDATLNSLLP-AYAILADLQQAMNIHCYLIR----YGFLSVVEVSTGLID 457
           + M +E ++P+  T++SLL      +        +H +++R     G  + V +   LID
Sbjct: 221 KDMQIEGLKPDAFTVSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCLID 280

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM-VQSGVQPN 516
           +YS+   ++   ++F  +    +++  W+ +I G+  +G  E  + LF EM V+ GV+PN
Sbjct: 281 MYSRSNRVDVGRRVFDRMEC--RNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEPN 338

Query: 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
           +V+  S L ACS    L     +  + +   Q  +       ++D+  + G LD A  + 
Sbjct: 339 KVSLVSVLPACSAVAGLTGVKQIHGYAIRK-QFNNDVSLCNALIDMYSKCGSLDHAKQVF 397

Query: 577 RTMPLKPTHAVWGALLGACVIHGNVE 602
                +     W +++    +HG  E
Sbjct: 398 EFGSFRRDPISWSSMISGYGLHGKGE 423


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 225/731 (30%), Positives = 366/731 (50%), Gaps = 74/731 (10%)

Query: 5   SHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHA-FIITSGPLFTHLRSSLVRAYGHVSNV 63
           S+   P        + Q+ +  K++   KQ HA  I+T       + + L++ Y   S++
Sbjct: 34  SYQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDL 93

Query: 64  RI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGM------------LRLGEYN 108
                +FD M +R +  +N ++  YA  G    + K+F  M             R+G   
Sbjct: 94  GFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMG 153

Query: 109 P--DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMN-------- 158
              D  T+ +V+K+C+ L     GI +HG  +  GFD D   G+ L+ MY          
Sbjct: 154 TVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDL 213

Query: 159 ------FGEVKAA----------------------------------------RKVFDAM 172
                 F E++ A                                         ++F+++
Sbjct: 214 RGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSL 273

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
             H++ S+N +I GY ++    EAL +F  + KSG+  D  S+     AC  +K    G 
Sbjct: 274 PNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGL 333

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            +H L        NI   NA++DMY KCG++ EA LVF+ M  RD V+W ++I  +  NG
Sbjct: 334 QVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNG 393

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
           +    L LF  M   G+ P+  T GS+L AC+    L  G  +H   IK  +  +  V  
Sbjct: 394 NEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGI 453

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           ALIDMY+KC +++ + ++  R +++  V WNAI++G      + +A + F +ML   V+P
Sbjct: 454 ALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDP 513

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           ++ T  ++L   A L  ++    IH  +I+    S   +S+ L+D+YSKCG+++    IF
Sbjct: 514 DNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIF 573

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
            + P  ++D V W+ ++ GY  HG GE A+ +F+ M    V+PN  TF + L AC H GL
Sbjct: 574 EKAP--NRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGL 631

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           +++GL  F+ ML N+    + +HY+C+VD++GR+G++ +A +LI  MP +    +W  LL
Sbjct: 632 VEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLL 691

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
             C IHGNVE+ E AA  + +LEPE+   YVLLS +Y+    W +   +R +M   GL+K
Sbjct: 692 SXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKK 751

Query: 653 APAHSLIEVRN 663
            P  S IE+++
Sbjct: 752 EPGCSWIEIKS 762


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 222/657 (33%), Positives = 353/657 (53%), Gaps = 12/657 (1%)

Query: 14  HLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSN----VRILFDE 69
           H++ ++++  A    IAG K LH  I+  G        +++  +   SN       LFDE
Sbjct: 39  HMLQQIIRNGA--DPIAG-KHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDE 95

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG-EYNPDNYTYPIVIKACTDLAWRK 128
           M + ++  + T+ + Y+++   H +L   L + + G E NP  +T  + +    DLA   
Sbjct: 96  MPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLA--H 153

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
           L   LH  V   G   D FVG  LI  Y   G V  AR VFD +    +VSW  +++ Y 
Sbjct: 154 LCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYA 213

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           +N + +E+L +F+ M   G +P+  ++   L +C  L+   +G+ +H     G    ++ 
Sbjct: 214 ENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLF 273

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
              AL+++Y K G + +A+ +F+ M + D++ W+ MI  YA +   + AL LF  M+   
Sbjct: 274 VGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTS 333

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           V PN+ T  S+L AC+S   L  G+ +H+  +K  L   V V  A++D+YAKC  ++ S 
Sbjct: 334 VVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSM 393

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           ++F     +  V WN I+ G V  G   +A+ LF  ML   ++P + T +S+L A A LA
Sbjct: 394 KLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLA 453

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            L+  + IH   I+  +     V+  LID+Y+KCG +  A   F ++  +D+  V W+ +
Sbjct: 454 ALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDE--VSWNAM 511

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           I GY MHG    A++LF  M  +  +PN++TF   L ACS+ GLL +G   F  M +++ 
Sbjct: 512 ICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYD 571

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAA 608
                +HYTC+V LLGR GR DEA  LI  +  +P+  VW ALLGACVIH  V+LG V A
Sbjct: 572 IKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCA 631

Query: 609 KWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           + + E+EP +   +VLLS +Y+   RW +   VR  M +K +RK P  S +E + ++
Sbjct: 632 QHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVV 688


>gi|147779768|emb|CAN71727.1| hypothetical protein VITISV_003014 [Vitis vinifera]
          Length = 1167

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/582 (35%), Positives = 332/582 (57%), Gaps = 11/582 (1%)

Query: 81   VMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT 140
            ++ MYA+ G  + +  +F  M R   Y     +   ++       W +L + L    + T
Sbjct: 588  LLSMYAKLGDXNSAXFIFYQMPRKTSYRDSMISGYGIMSMGRPFFWVRLLMHL---AIKT 644

Query: 141  G--FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
            G  FD    + N L+A Y + G++ ++ K+F  M   + +SWNTLISG   N   K+A+ 
Sbjct: 645  GKEFDSXLNISNALLAFYSDCGKLSSSFKLFQKMPLRNAISWNTLISGCVHNGDTKKAVA 704

Query: 199  VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
            +   M +  +E D  +++S++P C   + +  G  +H          +++  NAL+ MY 
Sbjct: 705  LLHKMQQEKMELDLVTLISIIPICRVXENLIQGMTLHGYAIKTGFACDVSLVNALISMYF 764

Query: 259  KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
             CG +N  + +F+ M  R +V+W ++I GY  +      +  F  M  EG +PN +T+ +
Sbjct: 765  NCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEVMASFCQMIXEGQKPNYVTLLN 824

Query: 319  LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
            LL +C +L    +G+S+HA+ ++  +  E  + T+LI MYA+   +     +F    K+ 
Sbjct: 825  LLPSCXTLL---QGKSIHAFAVRTGVIVETPIITSLISMYARFENINSFIFLFEMGGKED 881

Query: 379  TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
               WNAI++  V    A+++V  F ++L   VEP+  T  SL+ A   L+ L  + ++  
Sbjct: 882  IALWNAIMSVYVQTKNAKESVTFFCELLHARVEPDYITFLSLISACVQLSSLNLSNSVMA 941

Query: 439  YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
            Y+I+ GF   + +S  LID++++CG++  A KIF    +  KD V WS +I GYG+HG  
Sbjct: 942  YVIQKGFDKHIVISNALIDLFARCGNISIAKKIFE--GLSSKDAVSWSTMINGYGLHGDS 999

Query: 499  ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
            E A++L  +M  SG++P+ +T+ S L ACSHGG +D+G  +FN M+E      R +HY C
Sbjct: 1000 EAALALLSQMRLSGMKPDGITYASVLSACSHGGFIDQGWMIFNSMVE-EGVPRRMEHYAC 1058

Query: 559  IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
            +VDLLGR G+L+EAYD +  +P KP+ ++  +LL AC+IHGNV+LGE     LFEL+P+N
Sbjct: 1059 MVDLLGRTGQLNEAYDFVEKLPCKPSVSLLESLLXACIIHGNVKLGEKICSLLFELDPKN 1118

Query: 619  PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
             G+YV+L  +Y+A  RW DA  VR  M+E+ LRK P  SL+E
Sbjct: 1119 SGSYVMLYNIYAAAGRWMDANRVRSDMEERQLRKIPGFSLVE 1160



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 152/563 (26%), Positives = 261/563 (46%), Gaps = 40/563 (7%)

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           F+ + + S FL N +++    +G   D L ++L    LG    D++T+P VIKAC+ L  
Sbjct: 302 FEAIEKPSVFLQNLMIRRLCDHGLFEDVLCVYLKCRVLG-CPSDDFTFPFVIKACSALGA 360

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
             +   +H  VL T F+ +  +   L+  Y   G +  AR V D + +  +V+WN LISG
Sbjct: 361 VWIAEGVHCIVLRTAFEENLVIQTALVDFYAKTGRMVKARLVLDKISQPDLVTWNALISG 420

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
           Y  N + KE   V   +L+ G++P+ ++  S++P C  +K +++G+ IH  V       +
Sbjct: 421 YSLNGFDKEVFEVLRQILEMGLKPNVSTFASIIPLCTRMKCLDIGKSIHGFVVKSGFSSD 480

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
                AL+ MY   G++  AR +FD  +E++VV W SMI+ YA N     A  +FQ M  
Sbjct: 481 EFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSMISAYAQNQKSSEAFKMFQQMLK 540

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
             ++PN +T  S++  C +      G+SLHA  +K  L+ ++ V TAL+ MYAK      
Sbjct: 541 ANMQPNVVTFVSIIPCCENSANFWXGKSLHAHVMKYRLDSQLSVATALLSMYAKLGDXNS 600

Query: 367 SFQVFARTSKKKTVPWNAILA-GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
           +  +F +  +K +   + I   G +  G     V L   + ++  +  D+ LN       
Sbjct: 601 AXFIFYQMPRKTSYRDSMISGYGIMSMGRPFFWVRLLMHLAIKTGKEFDSXLN------- 653

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
                                    +S  L+  YS CG L S+ K+F ++P+++   + W
Sbjct: 654 -------------------------ISNALLAFYSDCGKLSSSFKLFQKMPLRNA--ISW 686

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I+G   +G  + AV+L  +M Q  ++ + VT  S +  C     L +G+ L  + ++
Sbjct: 687 NTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPICRVXENLIQGMTLHGYAIK 746

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
               C        ++ +    G ++    L   MP +   + W AL+     H      E
Sbjct: 747 TGFACD-VSLVNALISMYFNCGDINAGKFLFEVMPWRSIVS-WNALITGYRFH--YLQNE 802

Query: 606 VAAKWLFELEPENPGNYVLLSKL 628
           V A +   +      NYV L  L
Sbjct: 803 VMASFCQMIXEGQKPNYVTLLNL 825



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/580 (25%), Positives = 268/580 (46%), Gaps = 55/580 (9%)

Query: 33   KQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
            K +H F++ SG       T    S+    G++   R LFD  +E++  ++N+++  YAQN
Sbjct: 466  KSIHGFVVKSGFSSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSMISAYAQN 525

Query: 89   GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
              S ++ KMF  ML+     P+  T+  +I  C + A    G +LH  V+    D    V
Sbjct: 526  QKSSEAFKMFQQMLK-ANMQPNVVTFVSIIPCCENSANFWXGKSLHAHVMKYRLDSQLSV 584

Query: 149  GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
               L++MY   G+  +A  +F  M   +    +++ISGY   +  +     F W+     
Sbjct: 585  ATALLSMYAKLGDXNSAXFIFYQMPRKTSYR-DSMISGYGIMSMGRP----FFWV----- 634

Query: 209  EPDCASVVSVLPACGYLKEIEMGRMIHELV--AGGRLGKNIAAWNALVDMYVKCGSVNEA 266
                                   R++  L    G      +   NAL+  Y  CG ++ +
Sbjct: 635  -----------------------RLLMHLAIKTGKEFDSXLNISNALLAFYSDCGKLSSS 671

Query: 267  RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
              +F +M  R+ ++W ++I+G   NGD + A+ L   MQ E +  + +T+ S++  C   
Sbjct: 672  FKLFQKMPLRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPICRVX 731

Query: 327  YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
              L +G +LH + IK    C+V +  ALI MY  C  +     +F     +  V WNA++
Sbjct: 732  ENLIQGMTLHGYAIKTGFACDVSLVNALISMYFNCGDINAGKFLFEVMPWRSIVSWNALI 791

Query: 387  AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
             G   + L  + +  F QM+ E  +PN  TL +LLP+   L    Q  +IH + +R G +
Sbjct: 792  TGYRFHYLQNEVMASFCQMIXEGQKPNYVTLLNLLPSCXTLL---QGKSIHAFAVRTGVI 848

Query: 447  SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
                + T LI +Y++  ++ S   +F E+  K+ DI +W+ I++ Y    + + +V+ F 
Sbjct: 849  VETPIITSLISMYARFENINSFIFLF-EMGGKE-DIALWNAIMSVYVQTKNAKESVTFFC 906

Query: 507  EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE----NHQTCSRADHYTCIVDL 562
            E++ + V+P+ +TF S + AC     L+    +  ++++     H   S A     ++DL
Sbjct: 907  ELLHARVEPDYITFLSLISACVQLSSLNLSNSVMAYVIQKGFDKHIVISNA-----LIDL 961

Query: 563  LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
              R G +  A  +   +  K   + W  ++    +HG+ E
Sbjct: 962  FARCGNISIAKKIFEGLSSKDAVS-WSTMINGYGLHGDSE 1000



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 127/498 (25%), Positives = 230/498 (46%), Gaps = 44/498 (8%)

Query: 108 NPDNYTYPIVIKACTDLA-WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR 166
           NP   ++  +   C ++   + LG  L  R L+     D +V    I    + G  + A 
Sbjct: 244 NPKVTSFLRLFDLCRNIENLKPLGSVLIVRDLMR----DEYVVAEFIISCFHLGAPELAL 299

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
             F+A+ + SV   N +I     +   ++ L V+      G   D  +   V+ AC  L 
Sbjct: 300 SAFEAIEKPSVFLQNLMIRRLCDHGLFEDVLCVYLKCRVLGCPSDDFTFPFVIKACSALG 359

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
            + +   +H +V      +N+    ALVD Y K G + +ARLV D++S+ D+VTW ++I+
Sbjct: 360 AVWIAEGVHCIVLRTAFEENLVIQTALVDFYAKTGRMVKARLVLDKISQPDLVTWNALIS 419

Query: 287 GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346
           GY+LNG  +    + + +   G++PN  T  S++  C+ +  L  G+S+H + +K     
Sbjct: 420 GYSLNGFDKEVFEVLRQILEMGLKPNVSTFASIIPLCTRMKCLDIGKSIHGFVVKSGFSS 479

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
           +  +  ALI MYA    + ++  +F   ++K  V WN++++    N  + +A ++F+QML
Sbjct: 480 DEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSMISAYAQNQKSSEAFKMFQQML 539

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
              ++PN  T  S++P     A+     ++H ++++Y   S + V+T L+ +Y+K G   
Sbjct: 540 KANMQPNVVTFVSIIPCCENSANFWXGKSLHAHVMKYRLDSQLSVATALLSMYAKLGDXN 599

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA--VSLFKEMVQSGVQPNEVTFTSAL 524
           SA  IF ++P K         +I+GYG+   G     V L   +                
Sbjct: 600 SAXFIFYQMPRKTS---YRDSMISGYGIMSMGRPFFWVRLLMHL---------------- 640

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            A   G   D  L++ N +L  +  C                G+L  ++ L + MPL+  
Sbjct: 641 -AIKTGKEFDSXLNISNALLAFYSDC----------------GKLSSSFKLFQKMPLRNA 683

Query: 585 HAVWGALLGACVIHGNVE 602
            + W  L+  CV +G+ +
Sbjct: 684 IS-WNTLISGCVHNGDTK 700



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 162/302 (53%), Gaps = 8/302 (2%)

Query: 35   LHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
            LH + I +G      L ++L+  Y   G ++  + LF+ M  RS   +N ++  Y  +  
Sbjct: 740  LHGYAIKTGFACDVSLVNALISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYL 799

Query: 91   SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             ++ +  F  M+  G+  P+  T   ++ +C  L     G ++H   + TG  ++T +  
Sbjct: 800  QNEVMASFCQMIXEGQ-KPNYVTLLNLLPSCXTLLQ---GKSIHAFAVRTGVIVETPIIT 855

Query: 151  CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
             LI+MY  F  + +   +F+   +  +  WN ++S Y +   AKE++  F  +L + VEP
Sbjct: 856  SLISMYARFENINSFIFLFEMGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLHARVEP 915

Query: 211  DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
            D  + +S++ AC  L  + +   +   V      K+I   NAL+D++ +CG+++ A+ +F
Sbjct: 916  DYITFLSLISACVQLSSLNLSNSVMAYVIQKGFDKHIVISNALIDLFARCGNISIAKKIF 975

Query: 271  DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
            + +S +D V+W++MINGY L+GD   AL L   M+  G++P+ +T  S+LSACS   ++ 
Sbjct: 976  EGLSSKDAVSWSTMINGYGLHGDSEAALALLSQMRLSGMKPDGITYASVLSACSHGGFID 1035

Query: 331  RG 332
            +G
Sbjct: 1036 QG 1037


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 221/659 (33%), Positives = 359/659 (54%), Gaps = 15/659 (2%)

Query: 7   HTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH---VSN 62
           HT P     V+KL      +  I    ++H  +   G     ++ ++L+  YG+   +++
Sbjct: 160 HTFP----FVLKLCSD---SFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLND 212

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
            R LFDEM ER    +NT++ + + NG   ++   +  M+      P+  +   ++    
Sbjct: 213 ARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISA 272

Query: 123 DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT 182
            L   ++   +H   +  G D      N L+  Y   G VKA  +VF+   E + VSWN+
Sbjct: 273 ALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNS 332

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           +I+G        +AL  F  M+ +G +P+  ++ S+LP    L+  + G+ IH       
Sbjct: 333 IINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMG 392

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
              +I   N+L+DMY K G   EA  +F  +  R++V+W +MI  YALN     A+    
Sbjct: 393 TETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVI 452

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            MQ  G  PN++T  ++L AC+ L +L  G+ +HA  ++  L  ++ V  +LIDMYAKC 
Sbjct: 453 QMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCG 512

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            +  +  VF  TS+K  V +N ++ G        +++ LF +M +   +P+  +   ++ 
Sbjct: 513 CLHSARNVF-NTSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVIS 571

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A A LA L+Q   +H   +R    S + VS  L+D Y+KCG ++ A ++F++I  KD  +
Sbjct: 572 ACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKD--V 629

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
             W+ +I GYGM G  ETA+S+F+ M    VQ + V++ + L ACSHGGL++ G   F+ 
Sbjct: 630 ASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSE 689

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           ML      +   HYTC+VDLLGRAG ++EA  LI+ +P+ P   +WGALLGAC I+GNVE
Sbjct: 690 MLAQRLEPTEM-HYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVE 748

Query: 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           LG  AA+ LFEL+P++ G Y+LLS +Y+   RW +A  +R++M  +G +K P  S +++
Sbjct: 749 LGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQI 807



 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 208/620 (33%), Positives = 321/620 (51%), Gaps = 21/620 (3%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSG--PLFTHLRSSLVRAYG---HVSNVRILFDEMS 71
           I L+   +  +S+  TKQ+HA  I +G  P    L +SL+  Y    H  +   LF++  
Sbjct: 58  INLLTLCSKVQSLLQTKQVHALGILNGFLPRSVSLCASLILNYAKFQHPGSFCSLFNQTF 117

Query: 72  E--RSSFLYNTVMKMY--AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           +  R++FL+NT+++ +  A NG + D  + +  M+R G    D++T+P V+K C+D    
Sbjct: 118 QNCRTAFLWNTLIRAHSIAWNG-TFDGFETYNRMVRRG-VQLDDHTFPFVLKLCSDSFDI 175

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
             G+ +HG V   GFD D +VGN L+ +Y N G +  AR++FD M E  VVSWNT+I   
Sbjct: 176 CKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLL 235

Query: 188 FKNAYAKEALVVFDWM-LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
             N    EA   + WM L+S ++P+  SV+S+LP    L++ EM R IH       L   
Sbjct: 236 SVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQ 295

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           +   NALVD Y KCGSV     VF+   E++ V+W S+ING A  G   +AL  F++M  
Sbjct: 296 VTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMID 355

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
            G +PNS+TI S+L     L   K G+ +H ++++   E ++ +  +LIDMYAK      
Sbjct: 356 AGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGHSTE 415

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           +  +F    ++  V WNA++A    N L  +A+    QM      PN  T  ++LPA A 
Sbjct: 416 ASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACAR 475

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           L  L     IH   +R G  S + VS  LID+Y+KCG L SA  +F+      KD V ++
Sbjct: 476 LGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFN---TSRKDEVSYN 532

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
           ++I GY        +++LF EM   G +P+ V+F   + AC++   L +G ++    L N
Sbjct: 533 ILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALRN 592

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
           H   S       ++D   + GR+D A  L   +  K   A W  ++    + G +E    
Sbjct: 593 HLY-SHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDV-ASWNTMILGYGMIGELE---- 646

Query: 607 AAKWLFELEPENPGNYVLLS 626
            A  +FE   ++   Y L+S
Sbjct: 647 TAISMFEAMRDDTVQYDLVS 666


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/623 (36%), Positives = 330/623 (52%), Gaps = 36/623 (5%)

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW---RKL 129
           R +  YN+++           +L     ML  G ++  ++T   V+ AC+ L     R+L
Sbjct: 131 RDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRL 190

Query: 130 GIALHGRVLITGF---DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH------SVVSW 180
           G   H   L  GF     + F  N L++MY   G V  A+ +F             VV+W
Sbjct: 191 GREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTW 250

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV-A 239
           NT+IS   +     EA+ V   M+  GV PD  +  S LPAC  L+ + +GR +H +V  
Sbjct: 251 NTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLK 310

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE--RDVVTWTSMINGYALNGDVRNA 297
              L  N    +ALVDMY     V  AR VFD + E  R +  W +MI GYA  G    A
Sbjct: 311 DADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEA 370

Query: 298 LGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           L LF  M+ E G  P+  T+  +L AC+         ++H + +K+ +     V+ AL+D
Sbjct: 371 LELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMD 430

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE----- 411
           MYA+   + ++ ++FA    +  V WN ++ GCV  G A +A +L  +M +         
Sbjct: 431 MYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSS 490

Query: 412 -----------PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
                      PN+ TL +LLP  A LA   +   IH Y +R+   S + V + L+D+Y+
Sbjct: 491 TTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYA 550

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG-VQPNEVT 519
           KCG L ++  +F  +P   ++++ W+V+I  YGMHG G+ AV+LF EM   G   PNEVT
Sbjct: 551 KCGCLAASRAVFDRLP--RRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVT 608

Query: 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
           F +AL ACSH GL+D GL+LF+ M  +H      D + C+VD+LGRAGRLDEAY +I +M
Sbjct: 609 FIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSM 668

Query: 580 -PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDA 638
            P +   + W +LLGAC +H NVELGEVAA+ LFELEP    +YVLL  +YSA   W  +
Sbjct: 669 EPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKS 728

Query: 639 ENVRDVMDEKGLRKAPAHSLIEV 661
             VR  M  +G+ K P  S IE+
Sbjct: 729 VAVRVRMRRQGVAKEPGCSWIEL 751


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/634 (33%), Positives = 337/634 (53%), Gaps = 8/634 (1%)

Query: 32  TKQLHAFIIT-SGPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           T Q+H  ++  +G    ++ SSLV AY   G +     +   + ERS   +N ++  YA+
Sbjct: 170 THQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYAR 229

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           +G     + +   ++  G+     YT P V+K C +L   K G ++H  V+  G + D  
Sbjct: 230 HGDYRRVMIIIEKLVASGD-EISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNV 288

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           + +CL+ MY      + A +VF  + E  VV  + +IS + ++  A EAL +F  M   G
Sbjct: 289 LNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMG 348

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           V+P+    V +        +  + R +H  +            +A+++MYVK G+V +A 
Sbjct: 349 VKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDAT 408

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           + FD + E D  +W ++++ +    +    L +F+ M  EG   N  T  S+L  C+SL 
Sbjct: 409 VTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLM 468

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L+ G  +HA  +K  L+ +  V   L+DMYA+      +  VF +  ++    W  I++
Sbjct: 469 NLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMS 528

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G      A K VE FR ML E + P+DATL   L   + +A L   + +H + I+ G+ S
Sbjct: 529 GYAKTEEAEKVVEYFRSMLRENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIKSGWNS 588

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            V VS  L+D+Y KCG++  A  +F E   +D+  V W+ II GY  HGHG  A+  FK+
Sbjct: 589 SV-VSGALVDMYVKCGNIADAEMLFHESETRDQ--VAWNTIICGYSQHGHGYKALDAFKQ 645

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           MV  G +P+ +TF   L ACSH GLL+EG   F  +   +      +HY C+VD+L +AG
Sbjct: 646 MVDEGKRPDGITFVGVLSACSHAGLLNEGRKYFKSLSSIYGITPTMEHYACMVDILSKAG 705

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
           RL EA  LI  MPL P  ++W  +LGAC IH N+E+ E AA+ LFELEP +  + +LLS 
Sbjct: 706 RLVEAESLINQMPLAPDSSIWRTILGACRIHRNIEIAERAAERLFELEPHDASSSILLSN 765

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +Y+ + RW D   VR+++ + G++K P  S IE+
Sbjct: 766 IYADLGRWSDVTRVRNILLDHGVKKEPGCSWIEI 799



 Score =  221 bits (564), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 167/612 (27%), Positives = 289/612 (47%), Gaps = 21/612 (3%)

Query: 2   NGPSH-----HTLPKTTHLVI--KLVQQYAATKSIAGTKQLHAFIITSG--PLFTHLRSS 52
           + PSH     HT+     L +    +Q  A  +++   ++LHA ++ S   P  T L  S
Sbjct: 32  SSPSHANARLHTVAHAEELRLHAAALQDCAVRRTLRRGQELHARLLRSALHP-DTFLLDS 90

Query: 53  LVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNP 109
           L+  Y   G + + R +FD M  R    +  ++  +   G S  +L MF  M + G   P
Sbjct: 91  LLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAAGDSDQALDMFARMNQEG-IAP 149

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVL-ITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           + +T   V+KAC+  +  K    +HG+V+ + G D D +VG+ L+  Y + GE+ AA  V
Sbjct: 150 NGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLD-DPYVGSSLVEAYTSCGELDAAETV 208

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
              + E S VSWN L++GY ++   +  +++ + ++ SG E    ++ +VL  C  L   
Sbjct: 209 LLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLA 268

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
           + G+ +H  V    L  +    + LV+MY +C S  EA  VF R+ E DVV  ++MI+ +
Sbjct: 269 KYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCF 328

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
             +     AL LF  M   GV+PN      +    S        RS+HA+ +K       
Sbjct: 329 DRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLK 388

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            V  A+++MY K   V+ +   F    +  T  WN IL+         + + +F+QM  E
Sbjct: 389 GVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACE 448

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
               N  T  S+L     L +L+    +H  +++ G  +  +VS  L+D+Y++ G   SA
Sbjct: 449 GFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQSGCFTSA 508

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
             +F +  +K++D   W+VI++GY      E  V  F+ M++  ++P++ T   +L  CS
Sbjct: 509 CLVFEQ--LKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATLAVSLSVCS 566

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
               L  GL L ++ +++    S       +VD+  + G + +A  L      +     W
Sbjct: 567 DMASLGSGLQLHSWAIKSGWNSSVVS--GALVDMYVKCGNIADAEMLFHESETR-DQVAW 623

Query: 589 GALLGACVIHGN 600
             ++     HG+
Sbjct: 624 NTIICGYSQHGH 635


>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/587 (35%), Positives = 323/587 (55%), Gaps = 39/587 (6%)

Query: 111 NYT-YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           NY+ Y  +I+ CTD  + ++G  LH R++++    D F+G+ LI+ Y   G ++ A  VF
Sbjct: 2   NYSAYGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVF 61

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG---VEPDCASVVSVLPACGYL- 225
             +   ++ SWN L+  Y  +    + L +F  ++ S    V+PD  +V   L A   L 
Sbjct: 62  GKIPRKNIFSWNALLISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLF 121

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
               + + +H  +    L  +I   NAL+  Y +C  +  AR++FDRM ERD+V+W +M+
Sbjct: 122 SNSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAML 181

Query: 286 NGYALNGDVRNALGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
            GY+  G       LF++M     V+PN+LT  S+L AC+    L  G  +H +  +  +
Sbjct: 182 AGYSQGGSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQI 241

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFA------------------------------RT 374
           + +V +  A+I +YAKC  +  + ++F                               R 
Sbjct: 242 KMDVSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFRE 301

Query: 375 SKKKTVP-WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
            ++  +P WNA+++G V N     AV++FR M      PN  TL S+LP ++  + L+  
Sbjct: 302 QERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGG 361

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             IH Y IR  +   + V+T +ID Y+KCG L  A  +F +  IK + ++ W+ II+ Y 
Sbjct: 362 KEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQ--IKGRSLIAWTSIISAYA 419

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
           +HG    A+SLF EM+ +G+QP++VTFTS L AC+H G LDE   +FN +L  +      
Sbjct: 420 VHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLV 479

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
           +HY C+V +L RAG+L +A + I  MPL+PT  VWGALL    + G+VELG+     LFE
Sbjct: 480 EHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFE 539

Query: 614 LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           +EPEN GNYV+++ LYS   RWKDA+ +RD+M E  L+K P +S IE
Sbjct: 540 IEPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIE 586



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 172/362 (47%), Gaps = 41/362 (11%)

Query: 33  KQLHAFIITSGPLF-THLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQN 88
           K++H+FI+  G  +   + ++L+  Y     +   RI+FD M ER    +N ++  Y+Q 
Sbjct: 128 KEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGYSQG 187

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G+     ++F  ML   E  P+  T   V++AC        GI +H  V  +   MD  +
Sbjct: 188 GSYEKCKELFRVMLSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDVSL 247

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVS----------------------------- 179
            N +I +Y   G +  AR++F+ M E   ++                             
Sbjct: 248 WNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQERPRL 307

Query: 180 --WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
             WN +ISG  +N   + A+ +F  M   G  P+  ++ S+LP   +   ++ G+ IH  
Sbjct: 308 PTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGY 367

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                  +NI    A++D Y KCG ++ A+LVFD++  R ++ WTS+I+ YA++GD   A
Sbjct: 368 AIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVA 427

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L LF  M   G++P+ +T  S+L+AC+       G    AW I   L  E  ++  L++ 
Sbjct: 428 LSLFYEMLTNGIQPDQVTFTSVLAACA-----HSGELDEAWKIFNVLLPEYGIQ-PLVEH 481

Query: 358 YA 359
           YA
Sbjct: 482 YA 483


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/587 (35%), Positives = 322/587 (54%), Gaps = 39/587 (6%)

Query: 111 NYT-YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           NY+ Y  +I+ CTD  + ++G  LH R++++    D F+G+ LI+ Y   G ++ A  VF
Sbjct: 2   NYSAYGRLIQHCTDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVF 61

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG---VEPDCASVVSVLPACGYL- 225
             +   ++ SWN L   Y  +    + L +F  ++ S    V+PD  +V   L A   L 
Sbjct: 62  GKIPRKNIFSWNALFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLF 121

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
               + + +H  +    L  +I   NAL+  Y +C  +  AR++FDRM ERD V+W +M+
Sbjct: 122 SNSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAML 181

Query: 286 NGYALNGDVRNALGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
            GY+  G       LF++M     V+PN+LT  S+L AC+    L  G  +H +  +  +
Sbjct: 182 AGYSQGGSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQI 241

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFA------------------------------RT 374
           + +V +  A+I +YAKC ++  + ++F                               R 
Sbjct: 242 KMDVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFRE 301

Query: 375 SKKKTVP-WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
            ++  +P WNA+++G V N     AV++FR M      PN  TL S+LP ++  + L+  
Sbjct: 302 QERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGG 361

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             IH Y IR  +   + V+T +ID Y+KCG L  A  +F +I  K + ++ W+ II+ Y 
Sbjct: 362 KEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQI--KGRSLIAWTSIISAYA 419

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
           +HG    A+SLF EM+ +G+QP++VTFTS L AC+H G LDE   +FN +L  +      
Sbjct: 420 VHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLV 479

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
           +HY C+V +L RAG+L +A + I  MPL+PT  VWGALL    + G+VELG+     LFE
Sbjct: 480 EHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFE 539

Query: 614 LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           +EPEN GNYV+++ LYS   RWKDA+ +RD+M E  L+K P +S IE
Sbjct: 540 IEPENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIE 586



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 175/362 (48%), Gaps = 41/362 (11%)

Query: 33  KQLHAFIITSGPLFT-HLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQN 88
           K++H+FI+  G  +   + ++L+  Y     +   RI+FD M ER +  +N ++  Y+Q 
Sbjct: 128 KEVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQG 187

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G+  +  ++F  ML   E  P+  T   V++AC        GI +H  V  +   MD  +
Sbjct: 188 GSYEECKELFRVMLSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVSL 247

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWE---------------HSVV--------------- 178
            N +I +Y   G +  AR++F+ M E               H  V               
Sbjct: 248 WNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQERPRL 307

Query: 179 -SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
            +WN +ISG  +N   + A+ +F  M   G  P+  ++ S+LP   +   ++ G+ IH  
Sbjct: 308 PTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGY 367

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                  +NI    A++D Y KCG ++ A+LVFD++  R ++ WTS+I+ YA++GD   A
Sbjct: 368 AIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGDANVA 427

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L LF  M   G++P+ +T  S+L+AC+       G    AW I   L  E  ++  L++ 
Sbjct: 428 LSLFYEMLTNGIQPDQVTFTSVLAACA-----HSGELDEAWKIFNVLLPEYGIQ-PLVEH 481

Query: 358 YA 359
           YA
Sbjct: 482 YA 483



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 120/259 (46%), Gaps = 5/259 (1%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +G V+    LF E        +N V+    QN     ++ +F  M   G   P+  T   
Sbjct: 289 HGFVNQAMDLFREQERPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHG-CRPNTVTLAS 347

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           ++   +  +  K G  +HG  +   +D + +V   +I  Y   G +  A+ VFD +   S
Sbjct: 348 ILPVFSHFSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRS 407

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI-EMGRMIH 235
           +++W ++IS Y  +  A  AL +F  ML +G++PD  +  SVL AC +  E+ E  ++ +
Sbjct: 408 LIAWTSIISAYAVHGDANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFN 467

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDV 294
            L+    +   +  +  +V +  + G +++A     +M  E     W +++NG ++ GDV
Sbjct: 468 VLLPEYGIQPLVEHYACMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDV 527

Query: 295 RNALGLFQLMQFEGVRPNS 313
              LG +   +   + P +
Sbjct: 528 E--LGKYVFDRLFEIEPEN 544


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/556 (34%), Positives = 316/556 (56%), Gaps = 37/556 (6%)

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
           ++ + +G  LI + +N G+   AR++FD + +    + +TLIS    +  + EA+ ++  
Sbjct: 9   NIPSHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSS 68

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           + + G++PD    ++   AC    +    + +H+      +  ++   NAL+  Y KC  
Sbjct: 69  LQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKC 128

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           V  AR VFD +  RDVV+WTS+ + Y   G  R  + +F+ M + GV+PN +T+ S+L A
Sbjct: 129 VEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPA 188

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS--------------- 367
           C+ L  LK G+ +H + ++  +   + V +AL+ +YAKC  V+ +               
Sbjct: 189 CAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSW 248

Query: 368 ----------------FQVFARTSKK----KTVPWNAILAGCVHNGLARKAVELFRQMLV 407
                           F +F + S+         WNA++ GC+ NG + +AVE+FR+M  
Sbjct: 249 NGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQK 308

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
              +PN+ T++S+LPA +   +L+    IHCY+ R+  +  +  +T L+ +Y+KCG L  
Sbjct: 309 MGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNL 368

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           +  +F  +  + KD+V W+ +I    MHG+G+ A+ LF +M+ S VQPN VTFT  L  C
Sbjct: 369 SRNVFDMM--RRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGC 426

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           SH  L++EG+ +FN M  +H     A+HY+C+VD+  RAGRL+EAY  I+ MP++PT + 
Sbjct: 427 SHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASA 486

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           WGALL AC ++ NVEL +++AK LFE+EP NPGNYV L  +    + W +A  VR +M E
Sbjct: 487 WGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKE 546

Query: 648 KGLRKAPAHSLIEVRN 663
           +G+ K P  S ++V N
Sbjct: 547 RGITKTPGCSWLQVGN 562



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 150/510 (29%), Positives = 245/510 (48%), Gaps = 45/510 (8%)

Query: 47  THLRSSLVRA---YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR 103
           +HL   L+R     G  +  R LFD + +      +T++     +G S++++K++  +  
Sbjct: 12  SHLGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQE 71

Query: 104 LGEYNPDNYTYPIVIKACTDLAWRKLGIA-LHGRVLITGFDMDTFVGNCLIAMYMNFGEV 162
            G   PD   +    KAC  ++   L +  +H      G   D FVGN LI  Y     V
Sbjct: 72  RG-IKPDMPVFLAAAKACA-VSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCV 129

Query: 163 KAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC 222
           + AR+VFD +    VVSW +L S Y K  + ++ + VF  M  SGV+P+  +V S+LPAC
Sbjct: 130 EGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPAC 189

Query: 223 GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVV--- 279
             LK+++ G+ IH       +  N+   +ALV +Y KC SV EAR+VFD M  RDVV   
Sbjct: 190 AELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWN 249

Query: 280 --------------------------------TWTSMINGYALNGDVRNALGLFQLMQFE 307
                                           TW ++I G   NG    A+ +F+ MQ  
Sbjct: 250 GVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKM 309

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           G +PN +TI S+L ACS    L+ G+ +H +  +     ++   TAL+ MYAKC  + LS
Sbjct: 310 GFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLS 369

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
             VF    +K  V WN ++     +G  ++A+ LF +ML+  V+PN  T   +L   +  
Sbjct: 370 RNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHS 429

Query: 428 ADLQQAMNIHCYLIRYGFLSV-VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
             +++ + I   + R   +       + ++DIYS+ G L  A+K    +P+ +     W 
Sbjct: 430 RLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPM-EPTASAWG 488

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
            ++A   ++ + E A    K++ +  ++PN
Sbjct: 489 ALLAACRVYKNVELAKISAKKLFE--IEPN 516


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 221/659 (33%), Positives = 359/659 (54%), Gaps = 15/659 (2%)

Query: 7   HTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH---VSN 62
           HT P     V+KL      +  I    ++H  +   G     ++ ++L+  YG+   +++
Sbjct: 11  HTFP----FVLKLCSD---SFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLND 63

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
            R LFDEM ER    +NT++ + + NG   ++   +  M+      P+  +   ++    
Sbjct: 64  ARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLLPISA 123

Query: 123 DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT 182
            L   ++   +H   +  G D      N L+  Y   G VKA  +VF+   E + VSWN+
Sbjct: 124 ALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNS 183

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           +I+G        +AL  F  M+ +G +P+  ++ S+LP    L+  + G+ IH       
Sbjct: 184 IINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMG 243

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
              +I   N+L+DMY K G   EA  +F  +  R++V+W +MI  YALN     A+    
Sbjct: 244 TETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVI 303

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            MQ  G  PN++T  ++L AC+ L +L  G+ +HA  ++  L  ++ V  +LIDMYAKC 
Sbjct: 304 QMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCG 363

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            +  +  VF  TS+K  V +N ++ G        +++ LF +M +   +P+  +   ++ 
Sbjct: 364 CLHSARNVF-NTSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVIS 422

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A A LA L+Q   +H   +R    S + VS  L+D Y+KCG ++ A ++F++I  KD  +
Sbjct: 423 ACANLAALKQGKEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKD--V 480

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
             W+ +I GYGM G  ETA+S+F+ M    VQ + V++ + L ACSHGGL++ G   F+ 
Sbjct: 481 ASWNTMILGYGMIGELETAISMFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSE 540

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           ML      +   HYTC+VDLLGRAG ++EA  LI+ +P+ P   +WGALLGAC I+GNVE
Sbjct: 541 MLAQRLEPTEM-HYTCMVDLLGRAGFVEEAAKLIQQLPIAPDANIWGALLGACRIYGNVE 599

Query: 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           LG  AA+ LFEL+P++ G Y+LLS +Y+   RW +A  +R++M  +G +K P  S +++
Sbjct: 600 LGRRAAEHLFELKPQHCGYYILLSNIYAETGRWDEANKIRELMKSRGAKKNPGCSWVQI 658



 Score =  280 bits (715), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 181/527 (34%), Positives = 272/527 (51%), Gaps = 11/527 (2%)

Query: 101 MLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG 160
           M+R G    D++T+P V+K C+D      G+ +HG V   GFD D +VGN L+ +Y N G
Sbjct: 1   MVRRG-VQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCG 59

Query: 161 EVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM-LKSGVEPDCASVVSVL 219
            +  AR++FD M E  VVSWNT+I     N    EA   + WM L+S ++P+  SV+S+L
Sbjct: 60  FLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLL 119

Query: 220 PACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVV 279
           P    L++ EM R IH       L   +   NALVD Y KCGSV     VF+   E++ V
Sbjct: 120 PISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEV 179

Query: 280 TWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWT 339
           +W S+ING A  G   +AL  F++M   G +PNS+TI S+L     L   K G+ +H ++
Sbjct: 180 SWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFS 239

Query: 340 IKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAV 399
           ++   E ++ +  +LIDMYAK      +  +F    ++  V WNA++A    N L  +A+
Sbjct: 240 MRMGTETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAI 299

Query: 400 ELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459
               QM      PN  T  ++LPA A L  L     IH   +R G  S + VS  LID+Y
Sbjct: 300 RFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMY 359

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
           +KCG L SA  +F+      KD V ++++I GY        +++LF EM   G +P+ V+
Sbjct: 360 AKCGCLHSARNVFN---TSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVS 416

Query: 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
           F   + AC++   L +G ++    L NH   S       ++D   + GR+D A  L   +
Sbjct: 417 FVGVISACANLAALKQGKEVHGVALRNHLY-SHLFVSNSLLDFYTKCGRIDIACRLFNQI 475

Query: 580 PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
             K   A W  ++    + G +E     A  +FE   ++   Y L+S
Sbjct: 476 LFKDV-ASWNTMILGYGMIGELE----TAISMFEAMRDDTVQYDLVS 517


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/449 (41%), Positives = 276/449 (61%), Gaps = 3/449 (0%)

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           +VS+L AC    ++ +GR +H       +       N L+DMY KCG ++ A LVFD MS
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
            R VVTWTS+I  YA  G    A+ LF  M  EGV P+  TI ++L AC+    L+ G+ 
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 335 LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
           +H +  + +++  + V  AL+DMYAKC  ++ +  VF     K  + WN ++ G   N L
Sbjct: 121 VHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSL 180

Query: 395 ARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTG 454
             +A+ LF  M++E+ +P+  TL  +LPA A LA L +   +H +++R GF S  +V+  
Sbjct: 181 PNEALSLFGDMVLEM-KPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANA 239

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           L+D+Y KCG    A  +F  IP KD  ++ W+V+IAGYGMHG G  A++ F EM Q+G++
Sbjct: 240 LVDMYVKCGVPVLARLLFDMIPTKD--LITWTVMIAGYGMHGFGNNAITTFNEMRQAGIE 297

Query: 515 PNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYD 574
           P+EV+F S L+ACSH GLLDEG   FN M +      + +HY CIVDLL R+G+L  AY 
Sbjct: 298 PDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYK 357

Query: 575 LIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRR 634
            I++MP++P   +WGALL  C IH +V+L E  A+ +FELEPEN G YVLL+  Y+   +
Sbjct: 358 FIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEK 417

Query: 635 WKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           W++ + +R  +  +GL+K P  S IEV++
Sbjct: 418 WEEVKKLRQKIGRRGLKKNPGCSWIEVKS 446



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 119/389 (30%), Positives = 196/389 (50%), Gaps = 21/389 (5%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           +++AC +     LG A+HG  +       T   N L+ MY   G +  A  VFD M   +
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           VV+W +LI+ Y +   + EA+ +F  M + GV PD  ++ +VL AC     +E G+ +H 
Sbjct: 64  VVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVHN 123

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            +    +  NI   NAL+DMY KCGS+ +A  VF  M  +D+++W +MI GY+ N     
Sbjct: 124 YIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNE 183

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           AL LF  M  E ++P+  T+  +L AC+SL  L RG+ +H   ++     +  V  AL+D
Sbjct: 184 ALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVD 242

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY KC +  L+  +F     K  + W  ++AG   +G    A+  F +M    +EP++ +
Sbjct: 243 MYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVS 302

Query: 417 LNSLLPA--YAILAD--------LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
             S+L A  ++ L D        +Q   N+   L  Y           ++D+ ++ G L 
Sbjct: 303 FISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYAC---------IVDLLARSGKLA 353

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
            A+K    +PI + D  +W  +++G  +H
Sbjct: 354 MAYKFIKSMPI-EPDATIWGALLSGCRIH 381



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 181/341 (53%), Gaps = 7/341 (2%)

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           ++FD MS R+   + +++  YA+ G S +++++F  M R G  +PD +T   V+ AC   
Sbjct: 54  LVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREG-VSPDIFTITTVLHACACN 112

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
              + G  +H  +       + FV N L+ MY   G ++ A  VF  M    ++SWNT+I
Sbjct: 113 GSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMI 172

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
            GY KN+   EAL +F  M+   ++PD  ++  +LPAC  L  ++ G+ +H  +      
Sbjct: 173 GGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFF 231

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            +    NALVDMYVKCG    ARL+FD +  +D++TWT MI GY ++G   NA+  F  M
Sbjct: 232 SDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEM 291

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRG-RSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           +  G+ P+ ++  S+L ACS    L  G R  +    + N++ ++     ++D+ A+   
Sbjct: 292 RQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGK 351

Query: 364 VKLSFQVFARTS-KKKTVPWNAILAGC-VHNG--LARKAVE 400
           + ++++       +     W A+L+GC +H+   LA K  E
Sbjct: 352 LAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAE 392



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 136/288 (47%), Gaps = 8/288 (2%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFI----ITSGPLFTHLRSSLVRAYGHVSNVRILFDEMS 71
           +  ++   A   S+   K +H +I    + S     +    +    G + +   +F EM 
Sbjct: 102 ITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMP 161

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
            +    +NT++  Y++N   +++L +F  M+   E  PD  T   ++ AC  LA    G 
Sbjct: 162 VKDIISWNTMIGGYSKNSLPNEALSLFGDMVL--EMKPDGTTLACILPACASLASLDRGK 219

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +HG +L  GF  D  V N L+ MY+  G    AR +FD +    +++W  +I+GY  + 
Sbjct: 220 EVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHG 279

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAAW 250
           +   A+  F+ M ++G+EPD  S +S+L AC +   ++ G R  + +     +   +  +
Sbjct: 280 FGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHY 339

Query: 251 NALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNA 297
             +VD+  + G +  A      M  E D   W ++++G  ++ DV+ A
Sbjct: 340 ACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLA 387


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/634 (33%), Positives = 340/634 (53%), Gaps = 10/634 (1%)

Query: 35  LHAFIITSGPLF-THLRSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGA 90
           +H  +I  G L    + ++L+  YG    V     +F  M  R+   +N+++  +++NG 
Sbjct: 53  IHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGF 112

Query: 91  SHDSLKMFLGMLRLGEYN--PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           S D   M + M+  GE    PD  T   V+  C      ++GI +HG  +  G   D  V
Sbjct: 113 SKDCFDMLVEMMA-GEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRV 171

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM-LKSG 207
            N L+ MY   G +  A+ +FD     + VSWNT+I G     Y  EA  +F  M ++  
Sbjct: 172 NNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQED 231

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           +E +  +V+++LPAC  + ++   + +H          +    N  V  Y KCG +  A 
Sbjct: 232 IEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAE 291

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VF  M  + V +W ++I G A NGD R AL L+  M + G+ P+  TIGSLL A + L 
Sbjct: 292 RVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLK 351

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L+ G+ +H + ++  LE +  +  +L+ +Y  C     +  +F    +K +V WNA+++
Sbjct: 352 SLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMIS 411

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G   NGL   A+ LFR+++ +  +P+D  + S+L A +  + L+     HCY ++   + 
Sbjct: 412 GYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLME 471

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            V V+   ID+Y+K G ++ +  +F    +K+KD+  W+ IIA YG+HG GE ++ LF+ 
Sbjct: 472 DVFVACSTIDMYAKSGCIKESRSVFD--GLKNKDLASWNAIIAAYGVHGDGEESIELFER 529

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M + G  P+  TF   L  CSH GL++EGL  FN M   H    + +HY C++D+LGRAG
Sbjct: 530 MRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAG 589

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
           RLD+A  L+  MP +P   VW +LL  C   G +E+G++ A+ L ELEP+N  NYV LS 
Sbjct: 590 RLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSN 649

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           LY+   RW D   VR ++ + GL+K    S IE+
Sbjct: 650 LYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIEL 683



 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 178/525 (33%), Positives = 288/525 (54%), Gaps = 19/525 (3%)

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           +N    D++ MF+ ++   E+N DN+T+P VIKACT    R LG  +HG V+  G  +D 
Sbjct: 7   RNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDV 66

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML-- 204
           FVGN LIAMY  FG V AA KVF  M   ++VSWN++ISG+ +N ++K+   +   M+  
Sbjct: 67  FVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAG 126

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
           + G+ PD A++V+VLP C    +++MG  IH L     L +++   N+LVDMY KCG + 
Sbjct: 127 EEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLT 186

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF-EGVRPNSLTIGSLLSAC 323
           EA+++FD+ + ++ V+W +MI G    G +  A  LF+ MQ  E +  N +T+ ++L AC
Sbjct: 187 EAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPAC 246

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
             +  L+  + LH ++I+   + + +V    +  YAKC ++  + +VF     K    WN
Sbjct: 247 LEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWN 306

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           A++ GC  NG  RKA+ L+ QM    + P+  T+ SLL A A L  L+    +H +++R+
Sbjct: 307 ALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRH 366

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
           G      +   L+ +Y  CG   SA  +F    +++K  V W+ +I+GY  +G  E A+ 
Sbjct: 367 GLEIDSFIGISLLSLYIHCGESSSARLLFD--GMEEKSSVSWNAMISGYSQNGLPEDALI 424

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN------HQTCSRADHYT 557
           LF+++V  G QP+++   S L ACS    L  G +   + L+          CS  D Y 
Sbjct: 425 LFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYA 484

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
                  ++G + E+  +   +  K   A W A++ A  +HG+ E
Sbjct: 485 -------KSGCIKESRSVFDGLKNKDL-ASWNAIIAAYGVHGDGE 521


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 212/631 (33%), Positives = 338/631 (53%), Gaps = 73/631 (11%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD +   + F++NT+M+ Y Q+ ++  +L ++  M++     PDNYTYP+V++AC    
Sbjct: 97  IFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVK-NNVGPDNYTYPLVVQACAVRL 155

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
               G  +H  VL  GFD D +V N LI MY   G ++ ARK+FD       VSWN++++
Sbjct: 156 LEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILA 215

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY K    +EA ++FD M +                                       +
Sbjct: 216 GYVKKGDVEEAKLIFDQMPQ---------------------------------------R 236

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           NI A N+++ +  K G V EA  +F+ M E+D+V+W+++I+GY  NG    AL +F  M 
Sbjct: 237 NIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMN 296

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA------ 359
             G+R + + + S+LSAC+ L  +K G+ +H   I+  +E  V ++ ALI MY+      
Sbjct: 297 ANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIM 356

Query: 360 -------------------------KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
                                    KC  V+ +  +F    +K  V W+A+++G   +  
Sbjct: 357 DAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDC 416

Query: 395 ARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTG 454
             + + LF +M +  + P++  L S++ A   LA L Q   +H Y+ + G    V + T 
Sbjct: 417 FSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTT 476

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           L+D+Y KCG +E+A ++F+   +++K +  W+ +I G  ++G  E ++ +F EM  +GV 
Sbjct: 477 LLDMYMKCGCVENALEVFN--GMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVI 534

Query: 515 PNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYD 574
           PNE+TF   L AC H GL+DEG   F  M+E H       HY C+VDLLGRAG L+EA  
Sbjct: 535 PNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEK 594

Query: 575 LIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRR 634
           LI +MP+ P  A WGALLGAC  HG+ E+GE   + L EL+P++ G +VLLS ++++   
Sbjct: 595 LIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGD 654

Query: 635 WKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           W+D   VR +M ++G+ K P  SLIE   ++
Sbjct: 655 WEDVLEVRGMMKQQGVVKTPGCSLIEANGVV 685



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 178/389 (45%), Gaps = 41/389 (10%)

Query: 53  LVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNY 112
           L+   G V     LF+EM E+    ++ ++  Y QNG   ++L MF+ M   G    D  
Sbjct: 247 LLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANG-MRLDEV 305

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMY---------------- 156
               V+ AC  L+  K G  +HG V+  G +    + N LI MY                
Sbjct: 306 VVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGS 365

Query: 157 ---------------MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
                          M  G V+ AR +FD M E  +VSW+ +ISGY ++    E L +F 
Sbjct: 366 HNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFH 425

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
            M    + PD   +VSV+ AC +L  ++ G+ +H  +    L  N+     L+DMY+KCG
Sbjct: 426 EMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCG 485

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
            V  A  VF+ M E+ V +W ++I G A+NG V  +L +F  M+  GV PN +T   +L 
Sbjct: 486 CVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLG 545

Query: 322 ACSSLYYLKRGRSLHAWTI-KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           AC  +  +  GR   A  I K  +E  V     ++D+  +  L+  + ++         V
Sbjct: 546 ACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDV 605

Query: 381 P-WNAILAGCVHNG-------LARKAVEL 401
             W A+L  C  +G       + RK +EL
Sbjct: 606 ATWGALLGACKKHGDTEMGERVGRKLIEL 634


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/637 (33%), Positives = 354/637 (55%), Gaps = 13/637 (2%)

Query: 33  KQLHAFIITSGPLF-THLRSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQN 88
           KQ+H   I  G +    + +SLV  Y    +V     +FDEM  ++   + +++  Y QN
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQN 171

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G +  +LK+F   ++L    P+ +T+  V+         + G+ +H  V+ +G D   FV
Sbjct: 172 GLNEQALKLF-SQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFV 230

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           GN ++ MY     V  A+ VFD+M   + VSWN++I+G+  N    EA  +F  M   GV
Sbjct: 231 GNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGV 290

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +       +V+  C  +KE+   + +H  V       ++    AL+  Y KC  +++A  
Sbjct: 291 KLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFK 350

Query: 269 VFDRM-SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           +F  M   ++VV+WT++I+GY  NG    A+ LF  M+ EGVRPN  T  ++L+A +++ 
Sbjct: 351 LFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAV- 409

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
                  +HA  +K N E    V TAL D Y+K      + ++F    +K  V W+A+L+
Sbjct: 410 ---SPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLS 466

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI-LADLQQAMNIHCYLIRYGFL 446
           G    G    AV++F Q+  E VEPN+ T +S+L A A   A ++Q    H   I+ GF 
Sbjct: 467 GYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFS 526

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           + + VS+ L+ +Y+K G++ESA+++F      D+D+V W+ +I+GY  HG G+ ++ +F+
Sbjct: 527 NALCVSSALVTMYAKRGNIESANEVFKRQV--DRDLVSWNSMISGYAQHGCGKKSLKIFE 584

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           EM    ++ + +TF   + AC+H GL++EG   F+ M++++      +HY+C+VDL  RA
Sbjct: 585 EMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRA 644

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           G L++A DLI  MP      +W  LL AC +H NV+LGE+AA+ L  L+P++   YVLLS
Sbjct: 645 GMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLS 704

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            +Y+    W++   VR +MD K ++K   +S IEV+N
Sbjct: 705 NIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKN 741



 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 157/464 (33%), Positives = 252/464 (54%), Gaps = 8/464 (1%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LFDE  ++     N ++  +++N  + ++L +FLG+ R G    D  +   V+K C  L 
Sbjct: 48  LFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGS-PTDGSSLSCVLKVCGCLF 106

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
            R +G  +H + +  GF  D  VG  L+ MYM    V+   +VFD M   +VVSW +L++
Sbjct: 107 DRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLA 166

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY +N   ++AL +F  M   G++P+  +  +VL        +E G  +H +V    L  
Sbjct: 167 GYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDS 226

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
            I   N++V+MY K   V++A+ VFD M  R+ V+W SMI G+  NG    A  LF  M+
Sbjct: 227 TIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMR 286

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            EGV+       +++  C+++  +   + LH   IK   + ++ ++TAL+  Y+KC+ + 
Sbjct: 287 LEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEID 346

Query: 366 LSFQVFARTSK-KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
            +F++F      +  V W AI++G V NG   +A+ LF QM  E V PN  T +++L A 
Sbjct: 347 DAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTAN 406

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           A ++  Q    IH  +++  + +   V T L D YSK G    A KIF    I +KDIV 
Sbjct: 407 AAVSPSQ----IHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFE--LIDEKDIVA 460

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
           WS +++GY   G  E AV +F ++ + GV+PNE TF+S L+AC+
Sbjct: 461 WSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACA 504


>gi|449523019|ref|XP_004168522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/611 (34%), Positives = 349/611 (57%), Gaps = 9/611 (1%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           YG + + +  FD    + S  +N ++     NG+    L  F+   R   + P+  +  +
Sbjct: 95  YGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKG-RFAHFQPNISSLLL 153

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW-EH 175
           VI+A  +L     G A HG +  +GF     V N L+++Y     +  A K+F  M   +
Sbjct: 154 VIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEV-HMYFAYKLFGEMSVRN 212

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWML-KSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
            VVSW+ +I G+ +    ++  ++F  M+ ++G+ PD  +VVSVL AC  LK+I +G M+
Sbjct: 213 DVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTMV 272

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H LV    L  ++   N+L+DMY KC +V+ A   F  + E+++++W  M++ Y LN   
Sbjct: 273 HGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESH 332

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             AL L   M  EG   + +T+ ++L          + RS+H   I++  E   ++  ++
Sbjct: 333 LEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLLNSV 392

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           ID YAKCNLV+L+  VF   +KK  V W+ ++AG   NG   +A+ +F+QM  EV+ PN+
Sbjct: 393 IDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMNEEVI-PNN 451

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
            ++ +L+ A A+ A+L+Q+   H   +R G  S V + T +ID+YSKCG +E++ + F++
Sbjct: 452 VSIMNLMEACAVSAELRQSKWAHGIAVRRGLASEVAIGTSIIDMYSKCGDIEASIRAFNQ 511

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
           IP   K++V WS +I+ + ++G    A+ LF+++ Q+G +PN VT  S L ACSHGGL++
Sbjct: 512 IP--QKNVVCWSAMISAFRINGLAHEALMLFEKIKQNGTKPNAVTALSLLSACSHGGLIE 569

Query: 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP--LKPTHAVWGALL 592
           EGL  F  M++ H      +HY+CIVD+L RAG+ +EA +LI  +P  ++   ++WG LL
Sbjct: 570 EGLSFFTSMVQKHGIEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKEMEAGASIWGTLL 629

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
            +C  +GN+ LG  AA  + +LEP +   Y+L S LY+      D+  +R +  EKG++ 
Sbjct: 630 SSCRSYGNISLGSGAASRVLQLEPLSSAGYMLASNLYANCGLMIDSAKMRRLAKEKGVKV 689

Query: 653 APAHSLIEVRN 663
              +SL+ + +
Sbjct: 690 VAGYSLVHINS 700



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 148/534 (27%), Positives = 262/534 (49%), Gaps = 37/534 (6%)

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           +K  + +G   ++L+++  +   G    D +  P ++KAC++ ++  LG A+HG ++  G
Sbjct: 19  IKDASYSGNWQEALQLYHEIRISGAQLSDTWVLPSILKACSNTSF-NLGTAMHGCLIKQG 77

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
               T + N  I  YM +G++ +A++ FD+      VSWN ++ G F N      L    
Sbjct: 78  CQSSTSIANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLC--- 134

Query: 202 WMLK---SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           W +K   +  +P+ +S++ V+ A   LK    G   H  +        ++  N+L+ +Y 
Sbjct: 135 WFIKGRFAHFQPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYA 194

Query: 259 KCGSVNEARLVFDRMSER-DVVTWTSMINGYALNGDVRNALGLFQLMQFE-GVRPNSLTI 316
           +       +L F  MS R DVV+W+ MI G+   G+      +F+ M  E G+ P+ +T+
Sbjct: 195 EVHMYFAYKL-FGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTV 253

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
            S+L AC++L  +  G  +H   I + LE ++ V  +LIDMY+KC  V  +F+ F    +
Sbjct: 254 VSVLKACTNLKDISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPE 313

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           K  + WN +L+  + N    +A+ L   M+ E  E ++ TL ++L       D  +  ++
Sbjct: 314 KNIISWNLMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLKCRSV 373

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H  +IR G+ S   +   +ID Y+KC  +E A  +F    +  KD+V WS +IAG+  +G
Sbjct: 374 HGVIIRKGYESNELLLNSVIDAYAKCNLVELARMVFD--GMNKKDVVAWSTMIAGFARNG 431

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHAC-----------SHGGLLDEGLDLFNFMLE 545
             + A+S+FK+M +  V PN V+  + + AC           +HG  +  GL        
Sbjct: 432 KPDEAISVFKQMNEE-VIPNNVSIMNLMEACAVSAELRQSKWAHGIAVRRGL-------- 482

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
                S     T I+D+  + G ++ +      +P K     W A++ A  I+G
Sbjct: 483 ----ASEVAIGTSIIDMYSKCGDIEASIRAFNQIPQKNV-VCWSAMISAFRING 531



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/452 (23%), Positives = 209/452 (46%), Gaps = 43/452 (9%)

Query: 194 KEALVVFDWMLKSGVE-PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
           +EAL ++  +  SG +  D   + S+L AC       +G  +H  +       + +  N+
Sbjct: 29  QEALQLYHEIRISGAQLSDTWVLPSILKACSN-TSFNLGTAMHGCLIKQGCQSSTSIANS 87

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
            +D Y+K G ++ A+  FD    +D V+W  M++G   NG +   L  F   +F   +PN
Sbjct: 88  TIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHFQPN 147

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
             ++  ++ A   L    +G + H +  +      + V+ +L+ +YA+ ++   ++++F 
Sbjct: 148 ISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEVHMY-FAYKLFG 206

Query: 373 RTS-KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADL 430
             S +   V W+ ++ G V  G   +   +FR M+ E  + P+  T+ S+L A   L D+
Sbjct: 207 EMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDI 266

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
                +H  +I  G    + V   LID+YSKC ++ SA K F EIP  +K+I+ W+++++
Sbjct: 267 SLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIP--EKNIISWNLMLS 324

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGGLLDEGLD- 538
            Y ++     A++L   MV+ G + +EVT  + L               HG ++ +G + 
Sbjct: 325 AYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYES 384

Query: 539 ---LFNFMLENHQTCSRAD---------------HYTCIVDLLGRAGRLDEAYDLIRTM- 579
              L N +++ +  C+  +                ++ ++    R G+ DEA  + + M 
Sbjct: 385 NELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMN 444

Query: 580 -PLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
             + P +     L+ AC +   +      +KW
Sbjct: 445 EEVIPNNVSIMNLMEACAVSAELR----QSKW 472


>gi|302765581|ref|XP_002966211.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
 gi|300165631|gb|EFJ32238.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
          Length = 969

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 224/613 (36%), Positives = 334/613 (54%), Gaps = 19/613 (3%)

Query: 33  KQLHAFIITSGPLFTHL--RSSLVRAYGHV---SNVRILFDEMSERSSFLYNTV-MKMYA 86
           +Q+HA ++ S  L +H+   +SL+  Y       + R LFD MS R S  ++T+ M    
Sbjct: 336 RQIHALVVESS-LESHVVVANSLLGMYSRCRSWEDSRSLFDRMSVRDSVSWSTIIMACSR 394

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           ++    D+L ++  ML  G   P      +V++AC  LA  K G  +H  V+ +G + D 
Sbjct: 395 EDSHCRDALPLYRSMLHEG-VMPKTLALSMVLEACGSLAELKGGKLVHAHVIESGLEGD- 452

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
            VG  L+ MY   G V  ARKVFD +   S + WN++I+ Y +     EAL +F  M   
Sbjct: 453 LVGISLVNMYAKCGTVGEARKVFDRINNRSRILWNSMITAY-QEKDPHEALHLFREMQPE 511

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           GV PD  + ++VL AC    ++E GR IH  +       ++    AL +MY KCGS+ EA
Sbjct: 512 GVSPDRITFMTVLNACVNAADLENGRTIHTRIVDSGFAADVRVATALFNMYAKCGSLGEA 571

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
           R VFD M  RDVV+W +MI  Y    D   A+ L   MQ EG+RP+  T  SLL+ACS  
Sbjct: 572 RGVFDSMVFRDVVSWNNMIAAYVQGRDGEGAISLCWAMQLEGMRPDKATFTSLLNACSDP 631

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF------ARTSKKKTV 380
             L  GR +H+W  +  LE ++++ T LI MYA C  +  + ++F      +R   +   
Sbjct: 632 NRLVDGRQIHSWIAESRLENDIVMVTGLITMYANCGSLNNAREIFDNIFSNSRQHHRDLF 691

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            W +++     +G  RKA+EL+ QM    VE +  T  S+L A A L+DL+Q   IH  +
Sbjct: 692 LWTSMITAYEQHGEYRKALELYEQMHSRQVEADRVTFISVLNACAHLSDLRQGQAIHARV 751

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           +R G  + V V+  ++ +Y KCGS + A  +F +   K KDI +W+ +IA Y  HGHGE 
Sbjct: 752 MRRGLATDVAVANSIVFMYGKCGSFDEASIVFEK--TKHKDISLWTALIASYARHGHGEQ 809

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560
           A+ +F+ + Q G++ + +TF + L ACSH GL++EG + F  M E        +H++C+V
Sbjct: 810 ALWIFRRLRQDGIELSNLTFVAMLSACSHVGLIEEGCEFFASMAELGIE-PNMEHHSCLV 868

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620
           DLL RAG L  A + +  MP+     V  ALL AC +HG+VE     A+ L  L+PE+  
Sbjct: 869 DLLARAGHLHTAEEFLSRMPVAANTIVLTALLAACRVHGDVERARRVAEKLEALDPESEA 928

Query: 621 NYVLLSKLYSAVR 633
            YV LS +   +R
Sbjct: 929 PYVTLSNIEMVLR 941



 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 169/523 (32%), Positives = 279/523 (53%), Gaps = 15/523 (2%)

Query: 33  KQLHAFIITSGPLFTHL--RSSLVRAYGHV---SNVRI-LFDEMSERSSFLYNTVMKMYA 86
           +Q+HA ++ S  L +H+   +SL+  Y       + R+  F  M  R    +  ++  Y+
Sbjct: 131 RQIHALVVESS-LESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVSWTVMIGAYS 189

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD--M 144
           Q+G    S+++F  ML  G   P++ T+  ++  C   +  + G  +H  V+ +  +  +
Sbjct: 190 QDGKFSLSIQLFREMLLEGTA-PNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHL 248

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           D  V N  I MY+  G +  A + F  M    VVSW  +I  Y ++     +L +F  ML
Sbjct: 249 DIGVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREML 308

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
             G  P+  + VS+L  C     +E GR IH LV    L  ++   N+L+ MY +C S  
Sbjct: 309 LEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWE 368

Query: 265 EARLVFDRMSERDVVTWTSMINGYAL-NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
           ++R +FDRMS RD V+W+++I   +  +   R+AL L++ M  EGV P +L +  +L AC
Sbjct: 369 DSRSLFDRMSVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMVLEAC 428

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
            SL  LK G+ +HA  I+  LE + +V  +L++MYAKC  V  + +VF R + +  + WN
Sbjct: 429 GSLAELKGGKLVHAHVIESGLEGD-LVGISLVNMYAKCGTVGEARKVFDRINNRSRILWN 487

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           +++          +A+ LFR+M  E V P+  T  ++L A    ADL+    IH  ++  
Sbjct: 488 SMITA-YQEKDPHEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENGRTIHTRIVDS 546

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
           GF + V V+T L ++Y+KCGSL  A  +F  +    +D+V W+ +IA Y     GE A+S
Sbjct: 547 GFAADVRVATALFNMYAKCGSLGEARGVFDSMVF--RDVVSWNNMIAAYVQGRDGEGAIS 604

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
           L   M   G++P++ TFTS L+ACS    L +G  + +++ E+
Sbjct: 605 LCWAMQLEGMRPDKATFTSLLNACSDPNRLVDGRQIHSWIAES 647



 Score =  245 bits (626), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 159/531 (29%), Positives = 248/531 (46%), Gaps = 37/531 (6%)

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           PD      ++ ACT L   + G  +  R+  T  ++D  V N  I MY+  G +  A + 
Sbjct: 8   PDRVMIKTLLTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGCLDGAVQT 67

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           F  M    VVSW  +I  Y ++     +L +F  ML  G  P+  + VS+L  C     +
Sbjct: 68  FARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLL 127

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL-VFDRMSERDVVTWTSMING 287
           E GR IH LV    L  ++   N+L+ MY +C S  ++R+  F RM  RDVV+WT MI  
Sbjct: 128 EQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVSWTVMIGA 187

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC- 346
           Y+ +G    ++ LF+ M  EG  PNS+T  S+LS C +   L++GR +HA  ++ +LE  
Sbjct: 188 YSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESH 247

Query: 347 -EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
            ++ V    I+MY KC  +  + Q FAR  ++  V W  ++     +G    +++LFR+M
Sbjct: 248 LDIGVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREM 307

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
           L+E   PN  T  S+L      + L+Q   IH  ++     S V V+  L+ +YS+C S 
Sbjct: 308 LLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSW 367

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMH-GHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           E +  +F  + ++D   V WS II        H   A+ L++ M+  GV P  +  +  L
Sbjct: 368 EDSRSLFDRMSVRDS--VSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMVL 425

Query: 525 HACS-----------HGGLLDEGL--DLFNFMLEN-HQTCSRADHYTCIVDLLGRAGRL- 569
            AC            H  +++ GL  DL    L N +  C        + D +    R+ 
Sbjct: 426 EACGSLAELKGGKLVHAHVIESGLEGDLVGISLVNMYAKCGTVGEARKVFDRINNRSRIL 485

Query: 570 -------------DEAYDLIRTMP---LKPTHAVWGALLGACVIHGNVELG 604
                         EA  L R M    + P    +  +L ACV   ++E G
Sbjct: 486 WNSMITAYQEKDPHEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENG 536



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 131/399 (32%), Positives = 213/399 (53%), Gaps = 13/399 (3%)

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           M + G+ PD   + ++L AC  L  +E G++I + +AG +L  +I   N  ++MYVKCG 
Sbjct: 1   MDRRGIPPDRVMIKTLLTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGC 60

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           ++ A   F RM  RDVV+WT MI  Y+ +G    +L LF+ M  EG  PNS+T  S+LS 
Sbjct: 61  LDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSG 120

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS-FQVFARTSKKKTVP 381
           C +   L++GR +HA  ++ +LE  V+V  +L+ MY++C   + S  Q FAR  ++  V 
Sbjct: 121 CEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVS 180

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           W  ++     +G    +++LFR+ML+E   PN  T  S+L      + L+Q   IH  ++
Sbjct: 181 WTVMIGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVV 240

Query: 442 RYGFLSVVEVS--TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
                S +++      I++Y KCG L+ A + F+   +K +D+V W+V+I  Y   G   
Sbjct: 241 ESSLESHLDIGVLNLTINMYVKCGCLDGAVQTFAR--MKRRDVVSWTVMIGAYSQDGKFS 298

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
            ++ LF+EM+  G  PN VTF S L  C    LL++G  +   ++E+    S   H    
Sbjct: 299 LSLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVES----SLESHVVVA 354

Query: 560 VDLLGRAGRL---DEAYDLIRTMPLKPTHAVWGALLGAC 595
             LLG   R    +++  L   M ++ +   W  ++ AC
Sbjct: 355 NSLLGMYSRCRSWEDSRSLFDRMSVRDS-VSWSTIIMAC 392



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 173/380 (45%), Gaps = 41/380 (10%)

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M   G+ P+ + I +LL+AC+ L  L+ G+ +        LE ++ V    I+MY KC  
Sbjct: 1   MDRRGIPPDRVMIKTLLTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGC 60

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           +  + Q FAR  ++  V W  ++     +G    +++LFR+ML+E   PN  T  S+L  
Sbjct: 61  LDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSG 120

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
               + L+Q   IH  ++     S V V+  L+ +YS+C S E + ++ +   +K +D+V
Sbjct: 121 CEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDS-RMQTFARMKRRDVV 179

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+V+I  Y   G    ++ LF+EM+  G  PN VTF S L  C    LL++G  +   +
Sbjct: 180 SWTVMIGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALV 239

Query: 544 ----LENH-----------------------QTCSRADH-----YTCIVDLLGRAGRLDE 571
               LE+H                       QT +R        +T ++    + G+   
Sbjct: 240 VESSLESHLDIGVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSL 299

Query: 572 AYDLIRTMPLK---PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENP---GNYVLL 625
           +  L R M L+   P    + ++L  C     +E G      + E   E+     N +L 
Sbjct: 300 SLQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLL- 358

Query: 626 SKLYSAVRRWKDAENVRDVM 645
             +YS  R W+D+ ++ D M
Sbjct: 359 -GMYSRCRSWEDSRSLFDRM 377


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/598 (33%), Positives = 327/598 (54%), Gaps = 3/598 (0%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F E+ E++   ++ ++    QN  + + L++F  M  +G        Y  + ++C  L+
Sbjct: 238 VFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVG-VGVSQSIYASLFRSCAALS 296

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             +LG  LH   L + F  D  VG   + MY   G +  A+KV  +M + S+ S+N +I 
Sbjct: 297 ALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIV 356

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY ++    +AL  F  +LK+G+  D  ++   L AC  ++    GR +H L        
Sbjct: 357 GYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMS 416

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           NI   NA++DMY KC ++ EA  +FD M  RD V+W ++I     NG+    L  F  M 
Sbjct: 417 NICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMI 476

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
              + P+  T GS+L AC+    L  G  +H   IK  +  +  V  AL+DMY KC +++
Sbjct: 477 HSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIE 536

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + ++  RT +K  V WNAI++G      +  A + F +ML   V P++ T  ++L   A
Sbjct: 537 KADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCA 596

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            LA +     IH  +I+    S V + + L+D+YSKCG+++ +  +F + P  ++D V W
Sbjct: 597 NLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAP--NRDFVTW 654

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + ++ GY  HG GE A+ LF+ M    V+PN  TF S L AC+H GL+D+GL  F+ ML 
Sbjct: 655 NAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLS 714

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
            +    +++HY+C+VD+LGR+GR+DEA +L++ MP +    +W  LL  C IHGNVE+ E
Sbjct: 715 EYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAE 774

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            A + L +L+P++    VLLS +Y+    W +   +R +M    L+K P  S IE+++
Sbjct: 775 KATRALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCSWIELKD 832



 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 170/568 (29%), Positives = 276/568 (48%), Gaps = 16/568 (2%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           +S++  Y   G +   R  F EM ER    +N+V+  + QNG    S+ +FL M R G  
Sbjct: 119 NSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCG-V 177

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
             D  +  +V+KAC  L    +G+ +HG V+  GFD D   G+ L+ MY     +  +  
Sbjct: 178 GFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLS 237

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VF  + E + VSW+ +I+G  +N    E L +F  M   GV    +   S+  +C  L  
Sbjct: 238 VFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSA 297

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           + +G+ +H        G +I    A +DMY KCG + +A+ V   M +  + ++ ++I G
Sbjct: 298 LRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVG 357

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           YA +     AL  FQL+   G+  + +T+   L+AC+S+     GR +H   +K      
Sbjct: 358 YARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSN 417

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           + V  A++DMY KC  +  +  +F    ++  V WNAI+A C  NG   + +  F  M+ 
Sbjct: 418 ICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIH 477

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
             +EP+D T  S+L A A    L   M IH  +I+ G      V   L+D+Y KCG +E 
Sbjct: 478 SRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEK 537

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A KI      + K +V W+ II+G+ +    E A   F  M++ GV P+  T+ + L  C
Sbjct: 538 ADKIHDR--TEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTC 595

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTC--IVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           ++   +  G  +   +++      ++D Y C  +VD+  + G + ++  +    P +   
Sbjct: 596 ANLATVGLGKQIHAQIIKQEL---QSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNR-DF 651

Query: 586 AVWGALLGACVIHGNVELGEVAAKWLFE 613
             W A+L     HG   LGE A K LFE
Sbjct: 652 VTWNAMLCGYAHHG---LGEEALK-LFE 675



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 138/518 (26%), Positives = 232/518 (44%), Gaps = 96/518 (18%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           T+  + + C+       G   H R++  GF+  TFV NCL+ M                 
Sbjct: 51  TFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQM----------------- 93

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
                         Y K  Y   A  VFD M                    YL+++    
Sbjct: 94  --------------YIKCLYLDYACKVFDKM--------------------YLRDV---- 115

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
                           ++N+++  Y  CG ++ AR  F  M ERDVV+W S+I+G+  NG
Sbjct: 116 ---------------VSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNG 160

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
           + R ++ +F  M   GV  +  ++  +L AC +L     G  +H   +K   +C+V+  +
Sbjct: 161 ECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGS 220

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           AL+ MYAKC  +  S  VF+   +K  V W+A++AGCV N    + +ELF++M    V  
Sbjct: 221 ALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGV 280

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           + +   SL  + A L+ L+    +H + ++  F S + V T  +D+Y+KCG +  A K+ 
Sbjct: 281 SQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVL 340

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH--- 529
           S +P     +  ++ II GY     G  A+  F+ ++++G+  +E+T + AL+AC+    
Sbjct: 341 SSMP--KCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRG 398

Query: 530 -------GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
                   GL  + + + N  + N            I+D+ G+   L EA DL   M  +
Sbjct: 399 DLEGRQVHGLAVKSISMSNICVAN-----------AILDMYGKCKALAEASDLFDMMERR 447

Query: 583 PTHAVWGALLGACVIHGNVE--LGEVAAKWLFELEPEN 618
                W A++ AC  +GN E  L   A+     +EP++
Sbjct: 448 DA-VSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDD 484



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 7/159 (4%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           KQ+HA II        ++ S+LV  Y   G++ + +++F++   R    +N ++  YA +
Sbjct: 605 KQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHH 664

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT-GFDMDTF 147
           G   ++LK+F  M +L    P++ T+  V++AC  +     G+     +L   G D  + 
Sbjct: 665 GLGEEALKLFESM-QLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSE 723

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAM-WEHSVVSWNTLIS 185
             +C++ +    G +  A  +   M +E   V W  L+S
Sbjct: 724 HYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLS 762


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/612 (34%), Positives = 325/612 (53%), Gaps = 6/612 (0%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           S  +   H  N+   F EM ER+S  ++ V+  Y +N    + LK++  ML  G      
Sbjct: 216 STCKKLDHAFNI---FCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEG-MGVSQ 271

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T+    ++C  L+  +LG  LH   L T F  D  VG   + MY     +  ARKVF+ 
Sbjct: 272 ATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNT 331

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
               +  S N LI GY +     EAL +F  + KS ++ D  S+   L AC  +K    G
Sbjct: 332 FPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEG 391

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
             +H L     L  NI   N ++DMY KCG++ EA L+FD M  +D V+W ++I  +  N
Sbjct: 392 IQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQN 451

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
             V   L LF  M    + P+  T GS++ AC+    L  G  +H   IK  +  +  V 
Sbjct: 452 EHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVG 511

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
           +A+IDMY KC ++  + ++  R  ++ TV WN+I++G         A+  F +ML   V 
Sbjct: 512 SAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVI 571

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           P++ T  ++L   A LA ++    IH  +++    S V +++ ++D+YSKCG+++ +  +
Sbjct: 572 PDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIM 631

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F + P   +D V WS +I  Y  HG GE A+ LF+EM    V+PN   F S L AC+H G
Sbjct: 632 FEKAP--KRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMG 689

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
            +D+GL  F  M  ++    + +HY+C+VDLLGR+G+++EA +LI +MP +    +W  L
Sbjct: 690 FVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTL 749

Query: 592 LGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651
           LG C + GNVE+ E AA  L +L+P++   YVLLS +Y+    W +   +R  M    L+
Sbjct: 750 LGICRLQGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLK 809

Query: 652 KAPAHSLIEVRN 663
           K P  S I+VR+
Sbjct: 810 KEPGCSWIQVRD 821



 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 175/583 (30%), Positives = 286/583 (49%), Gaps = 13/583 (2%)

Query: 51  SSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++++  Y  V N+   + LFD M ER    +N+++  Y QNG    S+++F  M RL E 
Sbjct: 108 NTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKM-RLLEI 166

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
             D  T+ +V+KACT +    LG+ +H   +  GFD D   G  L+ MY    ++  A  
Sbjct: 167 QHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFN 226

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F  M E + V W+ +I+GY +N    E L ++  ML  G+    A+  S   +C  L  
Sbjct: 227 IFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSA 286

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
            E+G  +H        G +     A +DMY KC  + +AR VF+        +  ++I G
Sbjct: 287 FELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVG 346

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           YA    V  AL +F+ +Q   +  + +++   L+ACS++     G  LH   +K  L+  
Sbjct: 347 YARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFN 406

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           + V   ++DMYAKC  +  +  +F     K  V WNAI+A    N    + + LF  ML 
Sbjct: 407 ICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLR 466

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
             +EP+D T  S++ A A    L   M +H  +I+ G      V + +ID+Y KCG L  
Sbjct: 467 STMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVE 526

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A KI     ++++  V W+ II+G+     GE A+S F  M+Q GV P+  T+ + L  C
Sbjct: 527 AEKIHER--LEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDIC 584

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           ++   ++ G  +   +L+  Q  S     + IVD+  + G + ++  +    P K  +  
Sbjct: 585 ANLATVELGKQIHGQILK-LQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAP-KRDYVT 642

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLLSKL 628
           W A++ A   HG   LGE A K   E++ +N  P + + +S L
Sbjct: 643 WSAMICAYAYHG---LGEDAIKLFEEMQLQNVKPNHTIFISVL 682



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 140/523 (26%), Positives = 260/523 (49%), Gaps = 40/523 (7%)

Query: 106 EYNP-DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMY-----MNF 159
           + NP    T+  + + C++L     G   H ++ +TGF    FV NCL+  Y     +N+
Sbjct: 32  QMNPTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNY 91

Query: 160 --------------------------GEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
                                     G ++ A+ +FD+M E  VVSWN+++S Y +N + 
Sbjct: 92  AFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFH 151

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
           ++++ +F  M    ++ D A+   VL AC  +++  +G  +H L        ++    AL
Sbjct: 152 RKSIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTAL 211

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           VDMY  C  ++ A  +F  M ER+ V W+++I GY  N      L L+++M  EG+  + 
Sbjct: 212 VDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQ 271

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            T  S   +C+ L   + G  LHA+ +K N   + IV TA +DMYAKC+ +  + +VF  
Sbjct: 272 ATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNT 331

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
                    NA++ G        +A+E+FR +    ++ ++ +L+  L A + +    + 
Sbjct: 332 FPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEG 391

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
           + +H   ++ G    + V+  ++D+Y+KCG+L  A  IF ++ IKD   V W+ IIA + 
Sbjct: 392 IQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDA--VSWNAIIAAHE 449

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
            + H E  ++LF  M++S ++P++ TF S + AC+    L+ G+++   ++++       
Sbjct: 450 QNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMG---L 506

Query: 554 DHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           D +  + I+D+  + G L EA  +   +  + T   W +++  
Sbjct: 507 DWFVGSAIIDMYCKCGMLVEAEKIHERLEERTT-VSWNSIISG 548


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/599 (34%), Positives = 344/599 (57%), Gaps = 9/599 (1%)

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
           ++R    ++ ++  YA N  + +++  F  ML  G Y P+ Y +  V +AC++     LG
Sbjct: 3   NKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFY-PNEYCFTGVFRACSNKENISLG 61

Query: 131 IALHGRVLITG-FDMDTFVGNCLIAMYMN-FGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
             + G +L TG F+ D  VG  LI M++   G++++A KVFD M + +VV+W  +I+ + 
Sbjct: 62  KIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQ 121

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           +  ++++A+ +F  M+ SG  PD  ++  V+ AC  +  + +GR  H LV    L  ++ 
Sbjct: 122 QLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVC 181

Query: 249 AWNALVDMYVKC---GSVNEARLVFDRMSERDVVTWTSMINGYALNGDV-RNALGLFQLM 304
              +LVDMY KC   GSV++AR VFDRM   +V++WT++I GY  +G   R A+ LF  M
Sbjct: 182 VGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEM 241

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
               V+PN  T  S+L AC++L  +  G  ++A  +K  L     V  +LI MY++C  +
Sbjct: 242 VQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNM 301

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
           + + + F    +K  V +N I+     +  + +A ELF ++       N  T  SLL   
Sbjct: 302 ENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGA 361

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           + +  + +   IH  +++ GF S + +   LI +YS+CG++E+A ++F+E+   D +++ 
Sbjct: 362 SSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMG--DGNVIS 419

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+ +I G+  HG    A+  F +M+++GV PNEVT+ + L ACSH GL+ EGL  F  M 
Sbjct: 420 WTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMK 479

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
             H    R +HY C+VDLLGR+G L+EA +L+ +MP K    V    LGAC +HGN++LG
Sbjct: 480 VEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLG 539

Query: 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           + AA+ + E +P +P  Y+LLS L+++  +W++   +R  M E+ L K    S IEV N
Sbjct: 540 KHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVEN 598



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 144/482 (29%), Positives = 252/482 (52%), Gaps = 12/482 (2%)

Query: 53  LVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNY 112
            V+  G + +   +FD M +R+   +  ++  + Q G S D++ +FL M+ L  Y PD +
Sbjct: 88  FVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMV-LSGYVPDRF 146

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNF---GEVKAARKVF 169
           T   V+ AC ++    LG   H  V+ +G D+D  VG  L+ MY      G V  ARKVF
Sbjct: 147 TLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVF 206

Query: 170 DAMWEHSVVSWNTLISGYFKNAYA-KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           D M  H+V+SW  +I+GY ++    +EA+ +F  M++  V+P+  +  SVL AC  L +I
Sbjct: 207 DRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDI 266

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
            +G  ++ LV   RL       N+L+ MY +CG++  AR  FD + E+++V++ +++N Y
Sbjct: 267 WLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAY 326

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
           A + +   A  LF  ++  G   N+ T  SLLS  SS+  + +G  +H+  +K   +  +
Sbjct: 327 AKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNL 386

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            +  ALI MY++C  ++ +FQVF        + W +++ G   +G A +A+E F +ML  
Sbjct: 387 HICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEA 446

Query: 409 VVEPNDATLNSLLPAYAILADLQQAM-NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
            V PN+ T  ++L A + +  + + + +     + +G +  +E    ++D+  + G LE 
Sbjct: 447 GVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEE 506

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGH---GETAVSLFKEMVQSGVQPNEVTFTSAL 524
           A ++ + +P K  D +V    +    +HG+   G+ A  +  E  Q    P      S L
Sbjct: 507 AMELVNSMPFK-ADALVLRTFLGACRVHGNMDLGKHAAEMILE--QDPHDPAAYILLSNL 563

Query: 525 HA 526
           HA
Sbjct: 564 HA 565



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 123/227 (54%), Gaps = 5/227 (2%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           +SL+  Y   G++ N R  FD + E++   YNT++  YA++  S ++ ++F  +   G  
Sbjct: 289 NSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGT- 347

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
             + +T+  ++   + +     G  +H R+L +GF  +  + N LI+MY   G ++AA +
Sbjct: 348 GVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQ 407

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VF+ M + +V+SW ++I+G+ K+ +A  AL  F  ML++GV P+  + ++VL AC ++  
Sbjct: 408 VFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGL 467

Query: 228 IEMG-RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           I  G +    +     +   +  +  +VD+  + G + EA  + + M
Sbjct: 468 ISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSM 514


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/623 (35%), Positives = 332/623 (53%), Gaps = 71/623 (11%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           D+  +  ++  C  L   +   ++HGR++ T F  + F+ N LI +Y   G +  ARKVF
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 170 DAMWEHSV-------------------------------VSWNTLISGYFKNAYAKEALV 198
           D M E +V                                SWN++I+G+ ++   +EAL 
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
            F  M +     +  S  S L AC  LK++++G  IH L++  +   ++   + L+D Y 
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYS 202

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           KCG V  AR VFD M E++VV+W  +I  Y  NG    AL  F  M   G +P+ +T+ S
Sbjct: 203 KCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLAS 262

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQN-LECEVIVETALIDMYAKCNLV------------- 364
           ++SAC++L   K G  +HA  +K +    ++I+  AL+DMYAKC  V             
Sbjct: 263 VVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVR 322

Query: 365 ------------------KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
                             K +  +FA   +K  V WNA++AG   NG   +A+ LFR + 
Sbjct: 323 NAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLK 382

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL------SVVEVSTGLIDIYS 460
            E V P   T  +LL A A LADL+     H +++++GF         + V   LID+Y 
Sbjct: 383 RESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYM 442

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           KCGS+E   ++F  +   +KD V W+ +I GY  +G+G  A+ LF++M++SG +P+ VT 
Sbjct: 443 KCGSVEEGLRVFENMV--EKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTM 500

Query: 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
              L ACSH GL++EG   F  M + H      DHYTC+VDLLGRAG L+EA DLI +MP
Sbjct: 501 IGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMP 560

Query: 581 LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAEN 640
            +P   VW +LL AC +H N+ LG+  A+ +FE++P + G YVLL+ +YS + RW DA +
Sbjct: 561 KQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVS 620

Query: 641 VRDVMDEKGLRKAPAHSLIEVRN 663
           VR +M  +G+ K P  S I++++
Sbjct: 621 VRKLMRRRGVVKQPGCSWIDIQS 643



 Score =  258 bits (659), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 161/489 (32%), Positives = 255/489 (52%), Gaps = 42/489 (8%)

Query: 46  FTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           F  + S+L+R +G V     LF  M E+    +N+++  +AQ+    ++L  F+ M R  
Sbjct: 93  FNSIISTLMR-WGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHR-D 150

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
           ++  ++Y++   + AC+ L   KLG  +HG +  + + +D F+G+ LI  Y   G V  A
Sbjct: 151 DFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCA 210

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           R+VFD M E +VVSWN LI+ Y +N  A EAL  F  M + G +PD  ++ SV+ AC  L
Sbjct: 211 RRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATL 270

Query: 226 KEIEMGRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM----------- 273
              + G  IH  +V   +   ++   NALVDMY KCG VNEAR VFDRM           
Sbjct: 271 AAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTM 330

Query: 274 --------------------SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
                                ++D+V+W ++I GY  NG+   ALGLF++++ E V P  
Sbjct: 331 VSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTH 390

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNL------ECEVIVETALIDMYAKCNLVKLS 367
            T G+LL+A ++L  L+ GR  H+  +K         E ++ V  +LIDMY KC  V+  
Sbjct: 391 YTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEG 450

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
            +VF    +K  V WN ++ G   NG   +A+ELF++ML    +P+  T+   L A +  
Sbjct: 451 LRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHA 510

Query: 428 ADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
             +++       + + +G L V +  T ++D+  + G LE A  +   +P K  D VVWS
Sbjct: 511 GLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMP-KQPDAVVWS 569

Query: 487 VIIAGYGMH 495
            +++   +H
Sbjct: 570 SLLSACKVH 578


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/547 (35%), Positives = 322/547 (58%), Gaps = 3/547 (0%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           +IK  T +  +     LH + + T   +     + +I++Y N   +  A  VF  +    
Sbjct: 11  LIKNPTRIKSKSQAKQLHAQFIRTQ-SLSHTSASIVISIYTNLKLLHEALLVFKTLESPP 69

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V++W ++I  +   +    AL  F  M  SG  PD     SVL +C  + ++  G  +H 
Sbjct: 70  VLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHG 129

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            +    +  ++   NAL++MY K   ++  R VF+ M  +DVV++ ++I GYA +G   +
Sbjct: 130 FIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYED 189

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           AL + + M    ++P++ T+ S+L   S    + +G+ +H + I++ ++ +V + ++L+D
Sbjct: 190 ALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVD 249

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MYAK   ++ S +VF+   ++ ++ WN+++AG V NG   +A+ LFRQM+   V P    
Sbjct: 250 MYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVA 309

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
            +S++PA A LA L     +H Y++R GF   + +++ L+D+YSKCG++++A KIF  + 
Sbjct: 310 FSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMN 369

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           + D+  V W+ II G+ +HGHG  AVSLF+EM + GV+PN+V F + L ACSH GL+DE 
Sbjct: 370 LHDE--VSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEA 427

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
              FN M + +      +HY  + DLLGRAG+L+EAYD I  M ++PT +VW  LL +C 
Sbjct: 428 WGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCS 487

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           +H N+EL E  A+ +F ++ EN G YVL+  +Y++  RWK+   +R  + +KGLRK PA 
Sbjct: 488 VHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPAC 547

Query: 657 SLIEVRN 663
           S IE++N
Sbjct: 548 SWIEMKN 554



 Score =  226 bits (577), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 140/500 (28%), Positives = 255/500 (51%), Gaps = 12/500 (2%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRIL-- 66
           +  +  L+  L++     KS +  KQLHA  I +  L +H  +S+V +    +N+++L  
Sbjct: 1   MSSSKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQSL-SHTSASIVISI--YTNLKLLHE 57

Query: 67  ----FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
               F  +       + +V++ +        +L  F+ M R     PD+  +P V+K+CT
Sbjct: 58  ALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEM-RASGRCPDHNVFPSVLKSCT 116

Query: 123 DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT 182
            +   + G ++HG ++  G D D + GN L+ MY     + + RKVF+ M    VVS+NT
Sbjct: 117 MMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNT 176

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           +I+GY ++   ++AL +   M  S ++PD  ++ SVLP      ++  G+ IH  V    
Sbjct: 177 VIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKG 236

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
           +  ++   ++LVDMY K   + ++  VF  +  RD ++W S++ GY  NG    AL LF+
Sbjct: 237 IDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFR 296

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            M    VRP ++   S++ AC+ L  L  G+ LH + ++      + + +AL+DMY+KC 
Sbjct: 297 QMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCG 356

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            ++ + ++F R +    V W AI+ G   +G   +AV LF +M  + V+PN     ++L 
Sbjct: 357 NIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLT 416

Query: 423 AYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
           A + +  + +A      + + YG    +E    + D+  + G LE A+   S++ ++   
Sbjct: 417 ACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTG 476

Query: 482 IVVWSVIIAGYGMHGHGETA 501
             VWS +++   +H + E A
Sbjct: 477 -SVWSTLLSSCSVHKNLELA 495


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/617 (34%), Positives = 346/617 (56%), Gaps = 9/617 (1%)

Query: 49  LRSSLVRAYGHVS---NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           + +SL+  YG +S   +    FD M  R    +++++  + QNG + + L MF  M+   
Sbjct: 137 VETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEA 196

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
              PD+ T   V +AC++L   +LG ++HG V+    + +  + N LI MY   G++ +A
Sbjct: 197 -VEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSA 255

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
            ++F+ +       W  +IS Y ++   +EAL VF  M +  +EP+  ++V VL AC  L
Sbjct: 256 ERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARL 315

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWN-ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
             ++ GR +H  V    +   +     AL+++Y   G++ +   VF+ + E+ +++W ++
Sbjct: 316 GRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTL 375

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           I+ +  NG    AL LF  MQ +G+ P+S ++ S LSAC ++ + + G  +H + IK   
Sbjct: 376 ISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG- 434

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
                V+ ALIDMYAKC  V  + ++F +  +K  V WN+++ G   NG + +A+ LF Q
Sbjct: 435 NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQ 494

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           M +  V+ +  T  S++ A + L  L++   +H  LI YG      + T L D+YSKCG 
Sbjct: 495 MYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGE 554

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           L+ AH +F  +   ++ IV WSV+IAGYGMHG     +SLF +M+ SG++PN++TF   L
Sbjct: 555 LQMAHGVFDRM--SERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHIL 612

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            ACSH G ++EG   FN M E      + DH+ C+VDLL RAG L+ AY +I ++P    
Sbjct: 613 SACSHAGAVEEGKLYFNSMSE-FGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPAN 671

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
            ++WGALL  C IH  +++ +   K L +++  + G Y LLS +Y+    W     VR +
Sbjct: 672 SSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSM 731

Query: 645 MDEKGLRKAPAHSLIEV 661
           M  KGLRK P +S IE+
Sbjct: 732 MKSKGLRKVPGYSTIEI 748



 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 175/595 (29%), Positives = 313/595 (52%), Gaps = 19/595 (3%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSS--LVRAYGHV---SNVRILFDE 69
           L + L ++ A + ++    QLHA +  +G L  H  +S  L+ +Y  +    + + +FD 
Sbjct: 3   LYMPLFRRCATSTTLT---QLHAHLFITG-LHRHPPASTKLIESYAQIGIFESSKRVFDT 58

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
             +  SF++  ++K Y   G   +++ ++  M+   +    N+ +P V+KAC+      +
Sbjct: 59  FPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSV 118

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  +HGRV+  GF+ D  V   L+ MY     +  A K FD M    VV+W++++  + +
Sbjct: 119 GGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQ 178

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N  A E L +F  M+   VEPD  +++SV  AC  L  + +GR +H  V    +  N + 
Sbjct: 179 NGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASL 238

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
            N+L+ MY K G +  A  +F+ +  R    WT MI+ Y  +G  + AL +F  MQ   +
Sbjct: 239 NNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKM 298

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV-IVETALIDMYAKCNLVKLSF 368
            PN +T+  +L AC+ L  +K GRS+H + I++ ++ E+  +  AL+++YA    ++   
Sbjct: 299 EPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCH 358

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           +VF    +K  + WN +++    NG   +A+ LF QM  + + P+  +L S L A   ++
Sbjct: 359 KVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTIS 418

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
             Q    IH Y+I+ G  +   V   LID+Y+KCG + SA+K+F +  IK+K +V W+ +
Sbjct: 419 FSQLGAQIHGYIIKTGNFNDF-VQNALIDMYAKCGFVHSANKMFEK--IKEKSLVTWNSM 475

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           I G+  +G+   A++LF +M  + V+ +++TF S + ACSH G L++G  + + ++    
Sbjct: 476 ICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLI---M 532

Query: 549 TCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
              R D Y  T + D+  + G L  A+ +   M  +     W  ++    +HG +
Sbjct: 533 YGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSI-VSWSVMIAGYGMHGQI 586



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 199/363 (54%), Gaps = 8/363 (2%)

Query: 33  KQLHAFIITSG--PLFTHLRSSLVRAYGHVSNVR---ILFDEMSERSSFLYNTVMKMYAQ 87
           + +H F+I     P    L  +L+  Y    N+R    +F+ + E++   +NT++ ++ +
Sbjct: 322 RSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTR 381

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NG   ++L +F+ M   G   PD+Y+    + AC  +++ +LG  +HG ++ TG + + F
Sbjct: 382 NGQPEEALLLFVQMQTQG-LMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDF 439

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           V N LI MY   G V +A K+F+ + E S+V+WN++I G+ +N Y+ EA+ +FD M  + 
Sbjct: 440 VQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNC 499

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           V+ D  + +SV+ AC +L  +E G+ +H  +    L K+     AL DMY KCG +  A 
Sbjct: 500 VKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAH 559

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VFDRMSER +V+W+ MI GY ++G +   + LF  M   G++PN +T   +LSACS   
Sbjct: 560 GVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAG 619

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAIL 386
            ++ G+       +  +E +      ++D+ ++   +  ++Q+         +  W A+L
Sbjct: 620 AVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALL 679

Query: 387 AGC 389
            GC
Sbjct: 680 NGC 682


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/618 (32%), Positives = 339/618 (54%), Gaps = 8/618 (1%)

Query: 51  SSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           SSLV  Y     +     +F+ + E++   +N +++ YA NG SH  +++F+ M   G Y
Sbjct: 366 SSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSG-Y 424

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
           N D++T+  ++  C      ++G   H  ++      + FVGN L+ MY   G ++ AR+
Sbjct: 425 NIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQ 484

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F+ M +   V+WNT+I  Y ++    EA  +F  M   G+  D A + S L AC ++  
Sbjct: 485 IFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHG 544

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +  G+ +H L     L +++   ++L+DMY KCG + +AR VF  + E  VV+  ++I G
Sbjct: 545 LYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAG 604

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y+ N ++  A+ LFQ M   GV P+ +T  +++ AC     L  G   H    K+    E
Sbjct: 605 YSQN-NLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSE 663

Query: 348 -VIVETALIDMYAKCNLVKLSFQVFAR-TSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
              +  +L+ MY     +  +  +F+  +S K  V W  +++G   NG   +A++ +++M
Sbjct: 664 GEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEM 723

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
             + V P+ AT  ++L   ++L+ L++   IH  +           S  LID+Y+KCG +
Sbjct: 724 RHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDM 783

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
           + + ++F E+  +  ++V W+ +I GY  +G+ E A+ +F  M QS + P+E+TF   L 
Sbjct: 784 KGSSQVFDEMR-RRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLT 842

Query: 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           ACSH G + +G  +F  M+  +   +R DH  C+VDLLGR G L EA D I    LKP  
Sbjct: 843 ACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDA 902

Query: 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645
            +W +LLGAC IHG+   GE++A+ L ELEP+N   YVLLS +Y++   W+ A  +R VM
Sbjct: 903 RLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVM 962

Query: 646 DEKGLRKAPAHSLIEVRN 663
            ++G++K P +S I+V  
Sbjct: 963 RDRGVKKVPGYSWIDVEQ 980



 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 159/546 (29%), Positives = 277/546 (50%), Gaps = 5/546 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G + + R+LF EMS      +N ++  + + G    +++ F  M R         T   V
Sbjct: 275 GKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNM-RKSSVKSTRSTLGSV 333

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + A   +A   LG+ +H   +  G   + +VG+ L++MY    +++AA KVF+A+ E + 
Sbjct: 334 LSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKND 393

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V WN +I GY  N  + + + +F  M  SG   D  +  S+L  C    ++EMG   H +
Sbjct: 394 VFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSI 453

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +   +L KN+   NALVDMY KCG++ +AR +F+RM +RD VTW ++I  Y  + +   A
Sbjct: 454 IIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEA 513

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
             LF+ M   G+  +   + S L AC+ ++ L +G+ +H  ++K  L+ ++   ++LIDM
Sbjct: 514 FDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDM 573

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y+KC ++K + +VF+   +   V  NA++AG   N L  +AV LF++ML   V P++ T 
Sbjct: 574 YSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNL-EEAVVLFQEMLTRGVNPSEITF 632

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE-VSTGLIDIYSKCGSLESAHKIFSEIP 476
            +++ A      L      H  + + GF S  E +   L+ +Y     +  A  +FSE+ 
Sbjct: 633 ATIVEACHKPESLTLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELS 692

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
              K IV+W+ +++G+  +G  E A+  +KEM   GV P++ TF + L  CS    L EG
Sbjct: 693 -SPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREG 751

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
             + + +             T ++D+  + G +  +  +   M  +     W +L+    
Sbjct: 752 RAIHSLIFHLAHDLDELTSNT-LIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYA 810

Query: 597 IHGNVE 602
            +G  E
Sbjct: 811 KNGYAE 816



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 143/456 (31%), Positives = 237/456 (51%), Gaps = 8/456 (1%)

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
           ER+S+    ++ MYA+     D+ ++F  ++     +P+   +  +          +  +
Sbjct: 192 ERNSYCGGALVDMYAKCDRISDARRVFEWIV-----DPNTVCWTCLFSGYVKAGLPEEAV 246

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +  R+   G   D      +I  Y+  G++K AR +F  M    VV+WN +ISG+ K  
Sbjct: 247 LVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRG 306

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
               A+  F  M KS V+   +++ SVL A G +  +++G ++H       L  NI   +
Sbjct: 307 CETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGS 366

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           +LV MY KC  +  A  VF+ + E++ V W +MI GYA NG+    + LF  M+  G   
Sbjct: 367 SLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNI 426

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +  T  SLLS C++ + L+ G   H+  IK+ L   + V  AL+DMYAKC  ++ + Q+F
Sbjct: 427 DDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIF 486

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
            R   +  V WN I+   V +    +A +LF++M +  +  + A L S L A   +  L 
Sbjct: 487 ERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLY 546

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           Q   +HC  ++ G    +   + LID+YSKCG ++ A K+FS +P  +  +V  + +IAG
Sbjct: 547 QGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLP--EWSVVSMNALIAG 604

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           Y  + + E AV LF+EM+  GV P+E+TF + + AC
Sbjct: 605 YSQN-NLEEAVVLFQEMLTRGVNPSEITFATIVEAC 639



 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 148/524 (28%), Positives = 243/524 (46%), Gaps = 42/524 (8%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
             VS     FD + E+    +N+++ MY+  G     L+ F+ +    +  P+ +T+ IV
Sbjct: 109 AQVSYAEKQFDFL-EKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFE-NQIFPNKFTFSIV 166

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +  C      + G  +H  ++  G + +++ G  L+ MY     +  AR+VF+ + + + 
Sbjct: 167 LSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNT 226

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V W  L SGY K    +EA++VF+ M   G  PD  + V+V                   
Sbjct: 227 VCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTV------------------- 267

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                           ++ Y++ G + +ARL+F  MS  DVV W  MI+G+   G    A
Sbjct: 268 ----------------INTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVA 311

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           +  F  M+   V+    T+GS+LSA   +  L  G  +HA  IK  L   + V ++L+ M
Sbjct: 312 IEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSM 371

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y+KC  ++ + +VF    +K  V WNA++ G  HNG + K +ELF  M       +D T 
Sbjct: 372 YSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTF 431

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            SLL   A   DL+     H  +I+      + V   L+D+Y+KCG+LE A +IF  +  
Sbjct: 432 TSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMC- 490

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            D+D V W+ II  Y    +   A  LFK M   G+  +     S L AC+H   L +G 
Sbjct: 491 -DRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGK 549

Query: 538 DLFNFMLENHQTCSRADHY-TCIVDLLGRAGRLDEAYDLIRTMP 580
            +    L       R  H  + ++D+  + G + +A  +  ++P
Sbjct: 550 QV--HCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLP 591



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 147/542 (27%), Positives = 245/542 (45%), Gaps = 52/542 (9%)

Query: 66  LFDEMS--ERSSFLYNTVMKMYAQNGASHDS-----LKMFLGMLRLGEYNPDNYTYPIVI 118
           +FD  S   R S+  +   ++Y     SHD      L++ LG  +L +        P  +
Sbjct: 13  MFDSFSFVRRLSYSPDLGRRIYGHVLPSHDQIHQRLLEICLGQCKLFKSRKVFDEMPQRL 72

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
                LA R +G A+H + LI G D +  +GN ++ +Y    +V  A K FD + E  V 
Sbjct: 73  A----LALR-IGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVT 126

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           +WN+++S Y       + L  F  + ++ + P+  +   VL  C     +E GR IH  +
Sbjct: 127 AWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSM 186

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               L +N     ALVDMY KC  +++AR VF+ + + + V WT + +GY   G    A+
Sbjct: 187 IKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAV 246

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
            +F+ M+ EG RP+ L   ++++    L  LK  R L                       
Sbjct: 247 LVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLL----------------------- 283

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
                       F   S    V WN +++G    G    A+E F  M    V+   +TL 
Sbjct: 284 ------------FGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLG 331

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           S+L A  I+A+L   + +H   I+ G  S + V + L+ +YSKC  +E+A K+F    ++
Sbjct: 332 SVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFE--ALE 389

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
           +K+ V W+ +I GY  +G     + LF +M  SG   ++ TFTS L  C+    L+ G  
Sbjct: 390 EKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMG-S 448

Query: 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
            F+ ++   +          +VD+  + G L++A  +   M     +  W  ++G+ V  
Sbjct: 449 QFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERM-CDRDNVTWNTIIGSYVQD 507

Query: 599 GN 600
            N
Sbjct: 508 EN 509



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 98/228 (42%), Gaps = 25/228 (10%)

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           +P    LA L+    +H   +  G  S   +   ++D+Y+KC  +  A K F  +   +K
Sbjct: 68  MPQRLALA-LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL---EK 123

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
           D+  W+ +++ Y   G     +  F  + ++ + PN+ TF+  L  C+    ++ G  + 
Sbjct: 124 DVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIH 183

Query: 541 NFM----LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
             M    LE +  C  A     +VD+  +  R+ +A  +   + + P    W      C+
Sbjct: 184 CSMIKMGLERNSYCGGA-----LVDMYAKCDRISDARRVFEWI-VDPNTVCW-----TCL 232

Query: 597 IHGNVELG-EVAAKWLFEL---EPENPGNYVLLSKLYSAVR--RWKDA 638
             G V+ G    A  +FE    E   P +   ++ + + +R  + KDA
Sbjct: 233 FSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDA 280


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/546 (36%), Positives = 320/546 (58%), Gaps = 12/546 (2%)

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           KL    H R+L  G   ++ +   LI  Y        +R VFD++   +V  WN+LI+GY
Sbjct: 40  KLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGY 99

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKN 246
            KN    EA  +F+ M  S V PD  ++ ++      L  +  G+ IH + +  G +   
Sbjct: 100 AKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDT 159

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV---RNALGLFQL 303
           + A N+++ MY KCG+  E+R VFD M+ R+  +W  +I GYA++G+           + 
Sbjct: 160 VVA-NSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQ 218

Query: 304 MQFEGVRPNSLTIGSLLSACSSLY-YLKRGRSLHAWTIKQNL----ECEVIVETALIDMY 358
           MQ + VRP++ TI SLL  C         GR LH + +K  L    + +V +   LIDMY
Sbjct: 219 MQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMY 278

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM-LVEVVEPNDATL 417
           ++ N V +  +VF R   +    W A++ G V NG + +A+ LFR M +++ +EPN  +L
Sbjct: 279 SRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSL 338

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            S+LPA +  + L     IH + +R    + V +   LID+YSKCGSL+SA ++F +  +
Sbjct: 339 VSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSL 398

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
             KD + WS +I+GYG+HG G+ A+ L+ +M+Q+G++P+ +T    L ACS  GL++EGL
Sbjct: 399 C-KDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVNEGL 457

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
           ++++ ++ ++      + + CIVD+LGRAG+LD A D I+ MP++P  +VWGAL+   +I
Sbjct: 458 NIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPVEPGPSVWGALVSCSII 517

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           HG++E+ E+A ++L +LEPENP NYV +S LY++ RRW     VR +M +K LRK P  S
Sbjct: 518 HGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCS 577

Query: 658 LIEVRN 663
            I + N
Sbjct: 578 WISINN 583



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 161/521 (30%), Positives = 276/521 (52%), Gaps = 22/521 (4%)

Query: 27  KSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVM 82
           KS+  T+Q H+ I++ G    + L + L+ AY    H  + R++FD +  ++ FL+N+++
Sbjct: 37  KSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLI 96

Query: 83  KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
             YA+N   +++ ++F  M    +  PD++T   + K  ++L     G ++HG+ +  GF
Sbjct: 97  NGYAKNRLYNEAFQLFNQMCS-SDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGF 155

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA---YAKEALVV 199
             DT V N +++MY   G  + +RKVFD M   +  SWN LI+GY  +    + +E    
Sbjct: 156 VSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEF 215

Query: 200 FDWMLKSGVEPDCASVVSVLPAC-GYLKEIEMGRMIH------ELVAGGRLGKNIAAWNA 252
              M    V PD  ++ S+LP C G   + + GR +H      ELV G  L  ++     
Sbjct: 216 VKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVKNELVLG--LDSDVHLGCC 273

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ-FEGVRP 311
           L+DMY +   V   R VFDRM  R+V +WT+MINGY  NGD   AL LF+ MQ  +G+ P
Sbjct: 274 LIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEP 333

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           N +++ S+L ACSS   L  GR +H + +++ L  EV +  ALIDMY+KC  +  + +VF
Sbjct: 334 NRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVF 393

Query: 372 ARTSK-KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
              S  K  + W+++++G   +G  ++A+ L+ +ML   + P+  T   +L A +    +
Sbjct: 394 EDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLV 453

Query: 431 QQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
            + +NI+  +I  YG    +E+   ++D+  + G L+ A      +P+ +    VW  ++
Sbjct: 454 NEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMPV-EPGPSVWGALV 512

Query: 490 AGYGMHGHGETAVSLFKEMVQ-SGVQPNEVTFTSALHACSH 529
           +   +HG  E     ++ ++Q     P+     S L+A S 
Sbjct: 513 SCSIIHGDLEMQELAYRFLIQLEPENPSNYVSISNLYASSR 553



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 182/387 (47%), Gaps = 20/387 (5%)

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           K +++ R  H  +    L +N      L+  Y  C     +RLVFD +  ++V  W S+I
Sbjct: 37  KSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLI 96

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           NGYA N     A  LF  M    V P+  T+ +L    S L  L  G+S+H  +I+    
Sbjct: 97  NGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFV 156

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG---LARKAVELF 402
            + +V  +++ MY KC   + S +VF   + + +  WN ++AG   +G      +  E  
Sbjct: 157 SDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFV 216

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQ-----AMNIHCYLIR----YGFLSVVEVST 453
           +QM ++ V P+  T++SLLP    L D  +        +HCY+++     G  S V +  
Sbjct: 217 KQMQMDEVRPDAYTISSLLP----LCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGC 272

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM-VQSG 512
            LID+YS+   +    ++F    +K +++  W+ +I GY  +G  + A+SLF++M V  G
Sbjct: 273 CLIDMYSRSNKVVVGRRVFDR--MKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDG 330

Query: 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572
           ++PN V+  S L ACS    L  G  +  F +      +       ++D+  + G LD A
Sbjct: 331 IEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELN-NEVSLCNALIDMYSKCGSLDSA 389

Query: 573 YDLIRTMPLKPTHAVWGALLGACVIHG 599
             +     L      W +++    +HG
Sbjct: 390 RRVFEDDSLCKDAISWSSMISGYGLHG 416


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 241/701 (34%), Positives = 370/701 (52%), Gaps = 54/701 (7%)

Query: 6   HHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPL--FTH-LRSSLVRAY---GH 59
           H  LP          +  AA +S+   + +H   +    L  FT  + ++L+ AY   G 
Sbjct: 59  HFALPPAA-------KSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGD 111

Query: 60  VSNVRILFDEMSERSSFLYNTVMK---MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           ++    LF+ M  R +  +N+++    ++ +   + D+L+  L    L  +   ++T   
Sbjct: 112 LTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDML----LEGHPLSSFTLVS 167

Query: 117 VIKACTDLAWR-KLGIALHGRVLITGF-DMDT-FVGNCLIAMYMNFGEVKAARKVFDAMW 173
           V+ AC+ LA   +LG   H   L  GF D D  F  N L++MY   G V  A+ +F ++ 
Sbjct: 168 VLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVD 227

Query: 174 EHS-----VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
                   VV+WNT++S   ++    EA+ V   M+  GV PD  +  S LPAC  L+ +
Sbjct: 228 TTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEML 287

Query: 229 EMGRMIHELV-AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM--SERDVVTWTSMI 285
            +GR +H  V     L  N    +ALVDMY     V  AR VFD +    R +  W +M+
Sbjct: 288 SLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMV 347

Query: 286 NGYALNGDVRNALGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
            GYA  G    AL LF  M+ E GV P+  TI  +L AC+         ++H + +K+ +
Sbjct: 348 CGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGM 407

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
                V+ AL+D+YA+   ++ +  +FA    +  V WN ++ GCV  G    A +L R+
Sbjct: 408 ADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVRE 467

Query: 405 MLV------------------EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           M                    E V PN+ TL +LLP  A+LA   +   IH Y +R+   
Sbjct: 468 MQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALD 527

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           S + V + L+D+Y+KCG L  +  +F  +P   ++++ W+V+I  YGMHG G+ A++LF 
Sbjct: 528 SDIAVGSALVDMYAKCGCLALSRAVFDRLP--KRNVITWNVLIMAYGMHGLGDEAIALFD 585

Query: 507 EMVQSG-VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
            MV S   +PNEVTF +AL ACSH G++D G++LF+ M  NH      D + C VD+LGR
Sbjct: 586 RMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGR 645

Query: 566 AGRLDEAYDLIRTM-PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
           AGRLDEAY +I +M P +   + W + LGAC +H NV LGE+AA+ LF+LEP+   +YVL
Sbjct: 646 AGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVL 705

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           L  +YSA   W+ +  VR+ M ++G+ K P  S IE+  ++
Sbjct: 706 LCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVI 746


>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 974

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/618 (34%), Positives = 341/618 (55%), Gaps = 8/618 (1%)

Query: 48  HLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL 104
           ++ S+LV  Y   S +   + +F+ + ER+  L+N ++  +AQNG + + ++ F  M R 
Sbjct: 345 YVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRH 404

Query: 105 GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA 164
           G   PD +T+  +  AC  L +   G  LH  ++   F  + FV N L+ MY   G +K 
Sbjct: 405 GP-QPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKE 463

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
           ARK F+ M  H  VSWN +I GY +  Y  EA  +F  M+ +GV PD  S+ S++ AC  
Sbjct: 464 ARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACAN 523

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           ++E++ G+  H L+    L  +  A ++L+DMYVKCG V  AR VF  M  R+VV+  ++
Sbjct: 524 VQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNAL 583

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN- 343
           I GY + G +  A+ LFQ +Q  G++P  +T   LL  C   + L  GR +H   +K   
Sbjct: 584 IAGYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGF 642

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELF 402
           L    +V  +L+ +Y        S  +F+     K  V W A+++G        KA++ +
Sbjct: 643 LSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFY 702

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
           + M  + + P+ A   S+L A A ++ LQ    IH  +   GF       + LID+Y+KC
Sbjct: 703 QHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKC 762

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G ++ + ++F E+P ++ +++ W+ +I G   +G+ E A+ +FK+M Q  + P+EVTF  
Sbjct: 763 GDVKGSLQVFREMPRRN-NVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLG 821

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
            L ACSH G + EG  +F+ M+ N++   R DH  C+VD+LGR G L+EA + I  +  K
Sbjct: 822 VLSACSHAGRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCK 881

Query: 583 PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642
               +W  LLGAC  HG+   G+ AA  L EL+P++  +YVLLS +Y+    W  A ++R
Sbjct: 882 ADPMLWSTLLGACRKHGDEVRGKRAADKLMELKPQSSSSYVLLSSIYAESENWSGAVSLR 941

Query: 643 DVMDEKGLRKAPAHSLIE 660
             M  KG++K P +S IE
Sbjct: 942 REMKLKGVKKLPGYSWIE 959



 Score =  255 bits (652), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 154/508 (30%), Positives = 259/508 (50%), Gaps = 43/508 (8%)

Query: 33  KQLHAFIITSGPLF-THLRSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+H  +  +G  F +  +  L+  Y    ++ + R++FD      +  +  ++  Y ++
Sbjct: 162 RQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRD 221

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   +++K+F  M R+G + PD  T   V+ A                            
Sbjct: 222 GFPMEAVKVFDRMQRVG-HAPDQITLVTVVNA---------------------------- 252

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
                  Y+  G +  ARK+F  +   +VV+WN +ISG+ K  +A+EA+  F  + K+G+
Sbjct: 253 -------YVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGL 305

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +   +S+ SVL A   L  +  G M+H       L  N+   +ALV+MY KC  ++ A+ 
Sbjct: 306 KATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQ 365

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VF+ + ER++V W +M+ G+A NG  +  +  F  M+  G +P+  T  S+ SAC+SL+Y
Sbjct: 366 VFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHY 425

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L  G  LH   IK      + V  AL+DMYAK   +K + + F        V WNAI+ G
Sbjct: 426 LNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVG 485

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            V      +A  +FR+M+   V P++ +L S++ A A + +L++    HC L++ G  + 
Sbjct: 486 YVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTS 545

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
               + LID+Y KCG + +A  +F  +P   +++V  + +IAGY M GH E A+ LF+E+
Sbjct: 546 TCAGSSLIDMYVKCGVVLAARDVFYSMP--SRNVVSVNALIAGYTM-GHLEEAIHLFQEI 602

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEG 536
              G++P EVTF   L  C    +L+ G
Sbjct: 603 QMVGLKPTEVTFAGLLDGCDGAFMLNLG 630



 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 200/676 (29%), Positives = 310/676 (45%), Gaps = 90/676 (13%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFL 77
           K V Q  +T  +  +K L   +   G L  ++   L    G+V   +  F  + ++  F 
Sbjct: 51  KPVLQALSTAKVIHSKSLKIGVGLKG-LLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFA 109

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N+V+ MY  +G     ++ F+ M    E  P+ +T+ +V+ AC+ L     G  +H  V
Sbjct: 110 WNSVLSMYLDHGLFATVVQSFVCMWN-HEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGV 168

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
             TGF   +F    LI MY     ++ AR VFD       VSW  LI+GY ++ +  EA+
Sbjct: 169 FKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAV 228

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
            VFD M + G  PD  ++V+V                                   V+ Y
Sbjct: 229 KVFDRMQRVGHAPDQITLVTV-----------------------------------VNAY 253

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
           V  G + +AR +F ++   +VV W  MI+G+A  G    A+  F  ++  G++    ++G
Sbjct: 254 VALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLG 313

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           S+LSA +SL  L  G  +HA   K+ L+  V V +AL++MYAKC+ +  + QVF    ++
Sbjct: 314 SVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGER 373

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V WNA+L G   NGLA++ +E F  M     +P++ T  S+  A A L  L     +H
Sbjct: 374 NIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLH 433

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
             +I+  F S + V+  L+D+Y+K G+L+ A K F  + I D   V W+ II GY    +
Sbjct: 434 TVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDN--VSWNAIIVGYVQEEY 491

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE---NHQTC---S 551
            + A  +F+ MV +GV P+EV+  S + AC++   L  G      +++   +  TC   S
Sbjct: 492 NDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSS 551

Query: 552 RADHYT-CIVDLLGR----------------------AGRLDEAYDL---IRTMPLKPTH 585
             D Y  C V L  R                       G L+EA  L   I+ + LKPT 
Sbjct: 552 LIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTMGHLEEAIHLFQEIQMVGLKPTE 611

Query: 586 AVWGALLGAC----------VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRW 635
             +  LL  C           IHG V       KW F    E     V L  LY   +R+
Sbjct: 612 VTFAGLLDGCDGAFMLNLGRQIHGQV------MKWGFLSSSEMV--CVSLLCLYMNSQRF 663

Query: 636 KDAENV-RDVMDEKGL 650
            D+E +  ++   KGL
Sbjct: 664 VDSETLFSELQYPKGL 679


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/659 (33%), Positives = 368/659 (55%), Gaps = 10/659 (1%)

Query: 13  THLVIKLVQQYAATKSIAGTKQLHAFIITSGP---LFTH--LRSSLVRAYGHVSNVRILF 67
           +H    ++QQ    +     K LH  I+  G    LF    L ++ V  +G + +   LF
Sbjct: 3   SHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVH-FGFLEDASKLF 61

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           DEM   ++  + T+ + ++++     + ++ L + R G Y  + + +  ++K    +   
Sbjct: 62  DEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREG-YEVNQFVFTTLLKLLVSMDLA 120

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
              +++H  V   G   D FVG  LI  Y   G V AAR+VFD ++   +VSW  +++ Y
Sbjct: 121 DTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACY 180

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            +N   +++L++F  M   G  P+  ++ + L +C  L+  ++G+ +H         +++
Sbjct: 181 AENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDL 240

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQF 306
               AL+++Y K G + EA+  F+ M + D++ W+ MI+ YA +   + AL LF ++ Q 
Sbjct: 241 YVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQS 300

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
             V PN+ T  S+L AC+SL  L  G  +H+  +K  L+  V V  AL+D+YAKC  ++ 
Sbjct: 301 SVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIEN 360

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           S ++F  +++K  V WN I+ G V  G   KA+ LF  ML   ++P + T +S+L A A 
Sbjct: 361 SVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASAS 420

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           L  L+    IH   I+  +     V+  LID+Y+KCG ++ A   F ++  +D+  V W+
Sbjct: 421 LVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDE--VSWN 478

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            +I GY +HG G  A++LF  M QS  +PN++TF   L ACS+ GLLD+G   F  ML++
Sbjct: 479 ALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQD 538

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
           +      +HYTC+V LLGR+G+ DEA  LI  +P +P+  VW ALLGACVIH N++LG+V
Sbjct: 539 YGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKV 598

Query: 607 AAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
            A+ + E+EP++   +VLLS +Y+  +RW +   VR  M +K ++K P  S +E + ++
Sbjct: 599 CAQRVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVV 657


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/625 (34%), Positives = 350/625 (56%), Gaps = 14/625 (2%)

Query: 49  LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           L ++L+  Y   G   + R LFDEM +R+   +  ++  Y QNG   D+  +   M+  G
Sbjct: 37  LCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEG 96

Query: 106 EYNPDNYTYPIVIKACTD-LAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVK 163
            + P+ + +   I+AC + + WR+ G  +HG  + TG  D    VGN LI MY   G++ 
Sbjct: 97  -FLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDID 155

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
            AR VF  M +   VSWN++I+G  +N   ++A+  ++ M K+G+ P   +++S L +C 
Sbjct: 156 HARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCA 215

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
            L  I +G+  H       L  +++  N L+ +Y +   + E + VF  M ERD V+W +
Sbjct: 216 SLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNT 275

Query: 284 MINGYALNG-DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           +I   A +G  V  A+ +F  M   G  PN +T  +LL+  SSL   K    +HA  +K 
Sbjct: 276 VIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKY 335

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT-VPWNAILAGCVHNGLARKAVEL 401
           N++ +  +E AL+  Y K   ++   ++F+R S+++  V WN++++G +HN L  KA++L
Sbjct: 336 NVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDL 395

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
              M+      +  T  ++L A A +A L+  M +H   IR    S V + + L+D+YSK
Sbjct: 396 VWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSK 455

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
           CG ++ A + F+ +P+++  +  W+ +I+GY  HGHG+ A+ LF  M  SG  P+ +TF 
Sbjct: 456 CGRIDYASRFFNLMPVRN--LYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFV 513

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581
             L ACSH GL+DEG + F  M E +    R +HY+C+VDLLGRAG LD+  + I  MP+
Sbjct: 514 GVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPI 573

Query: 582 KPTHAVWGALLGACVIHGN---VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDA 638
           KP   +W  +LGAC   GN    ELG  AA+ LF ++P+N  NYVLLS +Y++  +W+D 
Sbjct: 574 KPNILIWRTVLGACC-RGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDM 632

Query: 639 ENVRDVMDEKGLRKAPAHSLIEVRN 663
              R  M E  ++K    S + +++
Sbjct: 633 ARTRRAMREAAVKKEAGCSWVTMKD 657



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 138/473 (29%), Positives = 243/473 (51%), Gaps = 10/473 (2%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
            H  VL  GFD D F+ N LI +Y+  G+  +ARK+FD M + + V+W  LISGY +N  
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGM 81

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACG-YLKEIEMGRMIHEL-VAGGRLGKNIAAW 250
            ++A  V   M+  G  P+  +  S + AC   +     GR +H   +  G     +A  
Sbjct: 82  PEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVG 141

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           N L++MY KCG ++ AR VF  M ++D V+W SMI G   N    +A+  +  M+  G+ 
Sbjct: 142 NGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLM 201

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           P++  + S LS+C+SL  +  G+  H   IK  L+ +V V   L+ +YA+ + +    +V
Sbjct: 202 PSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKV 261

Query: 371 FARTSKKKTVPWNAILAGCVHNGLA-RKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           F+   ++  V WN ++     +G +  +A+E+F +M+     PN  T  +LL   + L+ 
Sbjct: 262 FSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLST 321

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
            + +  IH  +++Y       +   L+  Y K G +E+  +IFS +  + +D V W+ +I
Sbjct: 322 SKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSER-RDEVSWNSMI 380

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           +GY  +     A+ L   M+Q G + +  TF + L AC+    L+ G+++    +   + 
Sbjct: 381 SGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAI---RA 437

Query: 550 CSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           C  +D    + +VD+  + GR+D A      MP++  ++ W +++     HG+
Sbjct: 438 CLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYS-WNSMISGYARHGH 489



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 37/205 (18%)

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
            H  ++++GF S + +   LI++Y + G   SA K+F E+P  D++ V W+ +I+GY  +
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMP--DRNGVTWACLISGYTQN 79

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACS------------HG-----GLLDEGLD 538
           G  E A  + KEM+  G  PN   F SA+ AC             HG     GL D  + 
Sbjct: 80  GMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVA 139

Query: 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGR---------LDE---------AYDLIRTMP 580
           + N ++  +  C   DH   +  L+              LD+         +Y+ +R   
Sbjct: 140 VGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTG 199

Query: 581 LKPTHAVWGALLGACVIHGNVELGE 605
           L P++    + L +C   G + LG+
Sbjct: 200 LMPSNFALISALSSCASLGCILLGQ 224


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1038

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/641 (33%), Positives = 355/641 (55%), Gaps = 10/641 (1%)

Query: 33  KQLHAFIITSGPLFTHL--RSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQ 87
           +Q+   +I SG L + L   +SL+  +G++ NV     +F+++SER +  +N+++  YAQ
Sbjct: 281 RQIIGQVIKSG-LESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQ 339

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NG   +S ++F  M R  +   ++ T   ++    D+  +K G  +HG V+  GFD    
Sbjct: 340 NGHIEESSRIFNLMRRFHD-EVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVC 398

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           V N L+ MY   G  + A  VF  M    ++SWN+L++ +  +  + +AL +   M+++G
Sbjct: 399 VCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTG 458

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
              +  +  S L AC   +  + GR++H LV    L  N    NALV MY K G ++ +R
Sbjct: 459 KSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSR 518

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC-SSL 326
            V  +M  RDVV W ++I GYA N D   AL  FQ ++ EGV  N +T+ S+LSAC    
Sbjct: 519 RVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPG 578

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             L+RG+ LHA+ +    E +  V+ +LI MYAKC  +  S  +F     +  + WNAIL
Sbjct: 579 DLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAIL 638

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           A   H+G   + ++L  +M    +  +  + +  L A A LA L++   +H   ++ GF 
Sbjct: 639 AANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFE 698

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
               +     D+YSKCG +    K+    P  ++ +  W+++I+  G HG+ E     F 
Sbjct: 699 LDCFIFNAAADMYSKCGEIGEVVKMLP--PSVNRSLPSWNILISALGRHGYFEEVCETFH 756

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           EM++ G++P  VTF S L ACSHGGL+D+GL  ++ + ++       +H  C++DLLGR+
Sbjct: 757 EMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRS 816

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           GRL EA   I  MP+KP   VW +LL +C IH +++ G  AA+ L +LEPE+   +VL S
Sbjct: 817 GRLAEAETFISKMPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSS 876

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
            +++   RW+D ENVR  M  K ++K  A S +++++ +++
Sbjct: 877 NMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSS 917



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 158/586 (26%), Positives = 283/586 (48%), Gaps = 18/586 (3%)

Query: 26  TKSIAGTKQLHAFIITS----GPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTV 81
           T+   G + LHA  +        L T+   ++   +G V   R LFD+M  R+   +NT+
Sbjct: 72  TRETTG-RALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTM 130

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC--TDLAWRKLGIALHGRVLI 139
           M    + G   + ++ F  M  LG   P ++    ++ AC  +   +R+ G+ +HG V  
Sbjct: 131 MSGIVRVGLYLEGMEFFQKMCDLG-IKPSSFVIASLVTACGRSGSMFRE-GVQVHGFVAK 188

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
           +G   D +V   ++ +Y  +G V  +RKVF+ M + +VVSW +L+ GY      +E + +
Sbjct: 189 SGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDI 248

Query: 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVK 259
           +  M   GVE +  S+  V+ +CG LK+  +GR I   V    L   +A  N+L+ M+  
Sbjct: 249 YKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGN 308

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
            G+V+ A  +F+++SERD ++W S++  YA NG +  +  +F LM+      NS T+ +L
Sbjct: 309 MGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTL 368

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           LS    + + K GR +H   +K   +  V V   L+ MYA     + +  VF +   K  
Sbjct: 369 LSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDL 428

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           + WN+++A  V++G +  A+ +   M+      N  T  S L A        +   +H  
Sbjct: 429 ISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGRILHGL 488

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           ++  G      +   L+ +Y K G + ++ ++  ++P   +D+V W+ +I GY  +   +
Sbjct: 489 VVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMP--RRDVVAWNALIGGYAENEDPD 546

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHAC-SHGGLLDEGLDLFNFMLENHQTCSRADHY-- 556
            A++ F+ +   GV  N +T  S L AC   G LL+ G  L  +++        +D +  
Sbjct: 547 KALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIV---SAGFESDEHVK 603

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
             ++ +  + G L  + DL   +  +     W A+L A   HG+ E
Sbjct: 604 NSLITMYAKCGDLSSSQDLFNGLDNRSI-ITWNAILAANAHHGHGE 648


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/557 (37%), Positives = 313/557 (56%), Gaps = 40/557 (7%)

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           +TF  N ++++   FG++  A  VF +M E    SWN ++SG+ ++   +EAL  F  M 
Sbjct: 84  NTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMH 143

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
                 +  S  S L AC  L ++ MG  IH L++  R   ++   +ALVDMY KCG V 
Sbjct: 144 SEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVA 203

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
            A+  FD M+ R++V+W S+I  Y  NG    AL +F +M   GV P+ +T+ S++SAC+
Sbjct: 204 CAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACA 263

Query: 325 SLYYLKRGRSLHAWTIKQN-LECEVIVETALIDMYAKCNLVKLSFQVFARTS-------- 375
           S   ++ G  +HA  +K++    ++++  AL+DMYAKC  V  +  VF R          
Sbjct: 264 SWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSET 323

Query: 376 -----------------------KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
                                  +K  V WNA++AG   NG   +AV LF  +  E + P
Sbjct: 324 SMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWP 383

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL------SVVEVSTGLIDIYSKCGSLE 466
              T  +LL A A LADL+     H  ++++GF       S + V   LID+Y KCG +E
Sbjct: 384 THYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVE 443

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
               +F  +   ++D+V W+ +I GY  +G+G  A+ +F++M+ SG +P+ VT    L A
Sbjct: 444 DGCLVFERMV--ERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSA 501

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           CSH GL++EG   F+ M          DH+TC+VDLLGRAG LDEA DLI+TMP++P + 
Sbjct: 502 CSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNV 561

Query: 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646
           VWG+LL AC +HGN+ELG+  A+ L E++P N G YVLLS +Y+ + RWKD   VR  M 
Sbjct: 562 VWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMR 621

Query: 647 EKGLRKAPAHSLIEVRN 663
           ++G+ K P  S IE+++
Sbjct: 622 QRGVIKQPGCSWIEIQS 638



 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 170/558 (30%), Positives = 277/558 (49%), Gaps = 80/558 (14%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIIT---SGPLFTHLRSSLVRAYG---HVSNVRILFDEMS 71
           KL+     +KS    +++HA II    S  +F  +++ LV AYG   +  + R +FD M 
Sbjct: 24  KLLDSCVRSKSGIDARRIHARIIKTQFSSEIF--IQNRLVDAYGKCGYFEDARKVFDRMP 81

Query: 72  ERSSFLYNTVMKM-------------------------------YAQNGASHDSLKMFLG 100
           +R++F YN V+ +                               +AQ+    ++L+ F+ 
Sbjct: 82  QRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVD 141

Query: 101 MLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG 160
           M    ++  + Y++   + AC  L    +GI +H  +  + + +D ++G+ L+ MY   G
Sbjct: 142 M-HSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCG 200

Query: 161 EVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLP 220
            V  A++ FD M   ++VSWN+LI+ Y +N  A +AL VF  M+ +GVEPD  ++ SV+ 
Sbjct: 201 VVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVS 260

Query: 221 ACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS----- 274
           AC     I  G  IH  +V   +   ++   NALVDMY KC  VNEARLVFDRM      
Sbjct: 261 ACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVV 320

Query: 275 --------------------------ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
                                     E++VV+W ++I GY  NG+   A+ LF L++ E 
Sbjct: 321 SETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRES 380

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL------ECEVIVETALIDMYAKCN 362
           + P   T G+LL+AC++L  LK GR  H   +K         E ++ V  +LIDMY KC 
Sbjct: 381 IWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCG 440

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
           +V+    VF R  ++  V WNA++ G   NG    A+E+FR+MLV   +P+  T+  +L 
Sbjct: 441 MVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLS 500

Query: 423 AYAILADLQQAMN-IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
           A +    +++     H      G   + +  T ++D+  + G L+ A+ +   +P++  D
Sbjct: 501 ACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQ-PD 559

Query: 482 IVVWSVIIAGYGMHGHGE 499
            VVW  ++A   +HG+ E
Sbjct: 560 NVVWGSLLAACKVHGNIE 577



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/494 (25%), Positives = 209/494 (42%), Gaps = 100/494 (20%)

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D +    +L +C   K     R IH  +   +    I   N LVD Y KCG   +AR VF
Sbjct: 18  DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVF 77

Query: 271 DRMSER-------------------------------DVVTWTSMINGYALNGDVRNALG 299
           DRM +R                               D  +W +M++G+A +     AL 
Sbjct: 78  DRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALR 137

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
            F  M  E    N  + GS LSAC+ L  L  G  +HA   K     +V + +AL+DMY+
Sbjct: 138 FFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYS 197

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           KC +V  + + F   + +  V WN+++     NG A KA+E+F  M+   VEP++ TL S
Sbjct: 198 KCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLAS 257

Query: 420 LLPAYAILADLQQAMNIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           ++ A A  + +++ + IH  ++ R  + + + +   L+D+Y+KC  +  A  +F  +P++
Sbjct: 258 VVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317

Query: 479 -----------------------------DKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
                                        +K++V W+ +IAGY  +G  E AV LF  + 
Sbjct: 318 NVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLK 377

Query: 510 QSGVQPNEVTFTSALHAC-----------SHGGLLDEGL--------DLF--NFMLENHQ 548
           +  + P   TF + L+AC           +H  +L  G         D+F  N +++ + 
Sbjct: 378 RESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYM 437

Query: 549 TCSRADHYTCIVDLL---------------GRAGRLDEAYDLIRTMPL---KPTHAVWGA 590
            C   +    + + +                + G    A ++ R M +   KP H     
Sbjct: 438 KCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIG 497

Query: 591 LLGACVIHGNVELG 604
           +L AC   G VE G
Sbjct: 498 VLSACSHAGLVEEG 511


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 207/571 (36%), Positives = 317/571 (55%), Gaps = 44/571 (7%)

Query: 133 LHGRVLITG-----FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           +H +++ TG     F +   +  C I+    FG +  A  +F+++ + +   WNT+I G 
Sbjct: 51  IHSQIIKTGLHNTQFALSKLIEFCAIS---PFGNLSYALLLFESIEQPNQFIWNTMIRGN 107

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV--------- 238
             ++    A+  +  ML  GVEP+  +   +L +C  +   + G+ IH  V         
Sbjct: 108 SLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDP 167

Query: 239 -----------AGGRLG-----------KNIAAWNALVDMYVKCGSVNEARLVFDRMSER 276
                        G LG           ++  ++ AL+  Y   G +++AR +F+ +  R
Sbjct: 168 FVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVR 227

Query: 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
           D V+W +MI GYA +G    AL  FQ M+   V PN  T+ ++LSAC+    L+ G  + 
Sbjct: 228 DAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVR 287

Query: 337 AWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR 396
           +W     L   + +  ALIDMY+KC  +  +  +F    +K  + WN ++ G  H    +
Sbjct: 288 SWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYK 347

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS--TG 454
           +A+ LFR+M    VEPND T  S+LPA A L  L     IH Y I   FL +   S  T 
Sbjct: 348 EALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAY-IDKKFLGLTNTSLWTS 406

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           LID+Y+KCG++E+A ++F+   +K K +  W+ +I+G  MHGH   A+ LF++M   G +
Sbjct: 407 LIDMYAKCGNIEAAKQVFA--GMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFE 464

Query: 515 PNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYD 574
           P+++TF   L ACSH GL++ G   F+ M+E++    +  HY C++DLLGRAG  DEA  
Sbjct: 465 PDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEA 524

Query: 575 LIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRR 634
           L++ M +KP  A+WG+LLGAC +HGNVELGE AAK LFELEPENPG YVLLS +Y+   R
Sbjct: 525 LMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGR 584

Query: 635 WKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           W D   +R  +++KG++K P  S IEV +++
Sbjct: 585 WDDVARIRTKLNDKGMKKVPGCSSIEVDSVV 615



 Score =  253 bits (646), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 165/548 (30%), Positives = 278/548 (50%), Gaps = 56/548 (10%)

Query: 1   MNGPSHHTLPKTTHLVIKLVQQY------AATKSIAGTKQLHAFIITSGPLFTHLRSS-- 52
           M  P+ H  P T+    KL+Q +      +  KS    KQ+H+ II +G   T    S  
Sbjct: 12  MPPPTLHFQP-TSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKL 70

Query: 53  ----LVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN 108
                +  +G++S   +LF+ + + + F++NT+++  + + +   ++  ++ ML  G   
Sbjct: 71  IEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCG-VE 129

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGE------- 161
           P++YT+P ++K+C  +   + G  +HG VL  G + D FV   LI MY   GE       
Sbjct: 130 PNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELV 189

Query: 162 ------------------------VKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
                                   +  AR++F+ +     VSWN +I+GY ++   +EAL
Sbjct: 190 FSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEAL 249

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
             F  M ++ V P+ +++V+VL AC     +E+G  +   +    LG N+   NAL+DMY
Sbjct: 250 AFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMY 309

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
            KCG +++AR +F+ + E+D+++W  MI GY+     + AL LF+ MQ   V PN +T  
Sbjct: 310 SKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFV 369

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLE-CEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
           S+L AC+ L  L  G+ +HA+  K+ L      + T+LIDMYAKC  ++ + QVFA    
Sbjct: 370 SILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKP 429

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--YAILADLQQAM 434
           K    WNA+++G   +G A  A+ELFRQM  E  EP+D T   +L A  +A L +L +  
Sbjct: 430 KSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGR-- 487

Query: 435 NIHCY---LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
              C+   +  Y     ++    +ID+  + G  + A  +   + +K  D  +W  ++  
Sbjct: 488 --QCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMK-PDGAIWGSLLGA 544

Query: 492 YGMHGHGE 499
             +HG+ E
Sbjct: 545 CRVHGNVE 552


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/617 (34%), Positives = 347/617 (56%), Gaps = 12/617 (1%)

Query: 53  LVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNY 112
           +V  Y     VR +FD M +R+   +NT++  Y +     +++K F  M+++G   P   
Sbjct: 153 MVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIG-IKPSPV 211

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDM--DTFVGNCLIAMYMNFGEVKAARKVFD 170
           ++  V  A + L   K    +HG ++  G +   D +V +  I MY   G ++ A+KVFD
Sbjct: 212 SFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFD 271

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIE 229
              E +   WNT+IS + +N ++ E + +F   ++S     D  +++S + A  +L++ E
Sbjct: 272 NCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFE 331

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
           +   +H  V        +   NAL+ MY +C S++ +  +FD M E+DVV+W +MI+ + 
Sbjct: 332 LAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFV 391

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            NG    AL LF  M+ + +  +S+T+ +LLSA S L     G+  H + ++  ++ E +
Sbjct: 392 QNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGM 451

Query: 350 VETALIDMYAKCNLVKLSFQVFART--SKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
            ++ LIDMYAK  L++ +  VF ++   ++    WN++++G   NGL  +A  + RQML 
Sbjct: 452 -DSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLD 510

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           + V PN  TL S+LPA      +     +H + IR      V V+T LID+YSK GS+  
Sbjct: 511 QKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAH 570

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A  +FS+    +K IV +S +I GYG HG GE+A+ +F  M +SG+QP+ VT  + L AC
Sbjct: 571 AENVFSKA--NEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSAC 628

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK-PTHA 586
           S+ GL+DEGL +F  M   +      +H+ C+ D+LGRAGR+D+AY+ +  +  K     
Sbjct: 629 SYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVME 688

Query: 587 VWGALLGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLLSKLYSAVRRWKDAENVRDV 644
           +WG+LL AC IH   ELG++ AK L E+E  N   G +VLLS +Y+  R W++ + VR  
Sbjct: 689 IWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQ 748

Query: 645 MDEKGLRKAPAHSLIEV 661
           M E+GL+K    S IE+
Sbjct: 749 MRERGLKKETGSSWIEI 765



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 169/588 (28%), Positives = 282/588 (47%), Gaps = 29/588 (4%)

Query: 41  TSGPLFTHLRSSLVR--AYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMF 98
           ++ P    +R  L R    G +   R LFD +   S+ L+NT++     N    ++L  +
Sbjct: 23  STNPKIPTIRYRLSRLCQEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFY 82

Query: 99  LGMLRLG-EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMY- 156
             M     +   D+YTY  V+KAC D     +G A+H   L    +    V N L+ MY 
Sbjct: 83  SNMKSSSPQVKCDSYTYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYS 142

Query: 157 ------------MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
                         +      RKVFD M + +VV+WNTLI+ Y +     EA+  F  M+
Sbjct: 143 MCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMM 202

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA--GGRLGKNIAAWNALVDMYVKCGS 262
           K G++P   S V+V PA   L + +   ++H ++   G     ++   ++ + MY + G 
Sbjct: 203 KIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGC 262

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL-FQLMQFEGVRPNSLTIGSLLS 321
           +  A+ VFD   ER+   W +MI+ +  N      + L FQ ++ E    + +T+ S +S
Sbjct: 263 LEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAIS 322

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
           A S L   +    LHA+ IK     +V V  ALI MY++CN +  SF++F    +K  V 
Sbjct: 323 AASHLQKFELAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVS 382

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           WN +++  V NGL  +A+ LF +M  + +  +  T+ +LL A + L +       H YL+
Sbjct: 383 WNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLL 442

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           R G +    + + LID+Y+K G +E+A  +F +    ++D   W+ +++GY  +G  + A
Sbjct: 443 RNG-IQFEGMDSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQA 501

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN--HQTCSRADHYTCI 559
             + ++M+   V PN VT  S L AC+  G +D G  L  F + N   Q    A   T +
Sbjct: 502 FLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVA---TAL 558

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVA 607
           +D+  ++G +  A ++      K        +LG    +G   +GE A
Sbjct: 559 IDMYSKSGSIAHAENVFSKANEKSIVTYSTMILG----YGQHGMGESA 602



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 192/369 (52%), Gaps = 17/369 (4%)

Query: 33  KQLHAFIITSGPLF-THLRSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQN 88
           +QLHAF+I +  +    + ++L+  Y   +++     +FD M E+    +NT++  + QN
Sbjct: 334 EQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQN 393

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD---MD 145
           G + ++L +F  M +  +   D+ T   ++ A +DL    +G   HG +L  G     MD
Sbjct: 394 GLNDEALMLFYEMKK-QDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMD 452

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEH--SVVSWNTLISGYFKNAYAKEALVVFDWM 203
           ++    LI MY   G ++AA+ VF+  + H     +WN+++SGY +N    +A ++   M
Sbjct: 453 SY----LIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQM 508

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
           L   V P+  ++ S+LPAC     I+ G+ +H       L +N+    AL+DMY K GS+
Sbjct: 509 LDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSI 568

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
             A  VF + +E+ +VT+++MI GY  +G   +AL +F  MQ  G++P+++T+ ++LSAC
Sbjct: 569 AHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSAC 628

Query: 324 SSLYYLKRG-RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP- 381
           S    +  G +   +     N++        + DM  +   V  +++      +K  V  
Sbjct: 629 SYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVME 688

Query: 382 -WNAILAGC 389
            W ++LA C
Sbjct: 689 IWGSLLAAC 697


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/617 (34%), Positives = 347/617 (56%), Gaps = 12/617 (1%)

Query: 53  LVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNY 112
           +V  Y     VR +FD M +R+   +NT++  Y +     +++K F  M+++G   P   
Sbjct: 129 MVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIG-IKPSPV 187

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDM--DTFVGNCLIAMYMNFGEVKAARKVFD 170
           ++  V  A + L   K    +HG ++  G +   D +V +  I MY   G ++ A+KVFD
Sbjct: 188 SFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFD 247

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIE 229
              E +   WNT+IS + +N ++ E + +F   ++S     D  +++S + A  +L++ E
Sbjct: 248 NCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFE 307

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
           +   +H  V        +   NAL+ MY +C S++ +  +FD M E+DVV+W +MI+ + 
Sbjct: 308 LAEQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFV 367

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            NG    AL LF  M+ + +  +S+T+ +LLSA S L     G+  H + ++  ++ E +
Sbjct: 368 QNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGM 427

Query: 350 VETALIDMYAKCNLVKLSFQVFART--SKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
            ++ LIDMYAK  L++ +  VF ++   ++    WN++++G   NGL  +A  + RQML 
Sbjct: 428 -DSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLD 486

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           + V PN  TL S+LPA      +     +H + IR      V V+T LID+YSK GS+  
Sbjct: 487 QKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSIAH 546

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A  +FS+    +K IV +S +I GYG HG GE+A+ +F  M +SG+QP+ VT  + L AC
Sbjct: 547 AENVFSKA--NEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSAC 604

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK-PTHA 586
           S+ GL+DEGL +F  M   +      +H+ C+ D+LGRAGR+D+AY+ +  +  K     
Sbjct: 605 SYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVME 664

Query: 587 VWGALLGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLLSKLYSAVRRWKDAENVRDV 644
           +WG+LL AC IH   ELG++ AK L E+E  N   G +VLLS +Y+  R W++ + VR  
Sbjct: 665 IWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQ 724

Query: 645 MDEKGLRKAPAHSLIEV 661
           M E+GL+K    S IE+
Sbjct: 725 MRERGLKKETGSSWIEI 741



 Score =  238 bits (606), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 165/569 (28%), Positives = 275/569 (48%), Gaps = 27/569 (4%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG-EYNPDNYTYPI 116
           G +   R LFD +   S+ L+NT++     N    ++L  +  M     +   D+YTY  
Sbjct: 18  GQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSS 77

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMY-------------MNFGEVK 163
           V+KAC D     +G A+H   L    +    V N L+ MY               +    
Sbjct: 78  VLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCD 137

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
             RKVFD M + +VV+WNTLI+ Y +     EA+  F  M+K G++P   S V+V PA  
Sbjct: 138 LVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFS 197

Query: 224 YLKEIEMGRMIHELVA--GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTW 281
            L + +   ++H ++   G     ++   ++ + MY + G +  A+ VFD   ER+   W
Sbjct: 198 SLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVW 257

Query: 282 TSMINGYALNGDVRNALGL-FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
            +MI+ +  N      + L FQ ++ E    + +T+ S +SA S L   +    LHA+ I
Sbjct: 258 NTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVI 317

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
           K     +V V  ALI MY++CN +  SF++F    +K  V WN +++  V NGL  +A+ 
Sbjct: 318 KNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALM 377

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
           LF +M  + +  +  T+ +LL A + L +       H YL+R G +    + + LID+Y+
Sbjct: 378 LFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNG-IQFEGMDSYLIDMYA 436

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           K G +E+A  +F +    ++D   W+ +++GY  +G  + A  + ++M+   V PN VT 
Sbjct: 437 KSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTL 496

Query: 521 TSALHACSHGGLLDEGLDLFNFMLEN--HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578
            S L AC+  G +D G  L  F + N   Q    A   T ++D+  ++G +  A ++   
Sbjct: 497 ASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVA---TALIDMYSKSGSIAHAENVFSK 553

Query: 579 MPLKPTHAVWGALLGACVIHGNVELGEVA 607
              K        +LG    +G   +GE A
Sbjct: 554 ANEKSIVTYSTMILG----YGQHGMGESA 578



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 192/369 (52%), Gaps = 17/369 (4%)

Query: 33  KQLHAFIITSGPLF-THLRSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQN 88
           +QLHAF+I +  +    + ++L+  Y   +++     +FD M E+    +NT++  + QN
Sbjct: 310 EQLHAFVIKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQN 369

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD---MD 145
           G + ++L +F  M +  +   D+ T   ++ A +DL    +G   HG +L  G     MD
Sbjct: 370 GLNDEALMLFYEMKK-QDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMD 428

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEH--SVVSWNTLISGYFKNAYAKEALVVFDWM 203
           ++    LI MY   G ++AA+ VF+  + H     +WN+++SGY +N    +A ++   M
Sbjct: 429 SY----LIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQM 484

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
           L   V P+  ++ S+LPAC     I+ G+ +H       L +N+    AL+DMY K GS+
Sbjct: 485 LDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGSI 544

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
             A  VF + +E+ +VT+++MI GY  +G   +AL +F  MQ  G++P+++T+ ++LSAC
Sbjct: 545 AHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSAC 604

Query: 324 SSLYYLKRG-RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP- 381
           S    +  G +   +     N++        + DM  +   V  +++      +K  V  
Sbjct: 605 SYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVME 664

Query: 382 -WNAILAGC 389
            W ++LA C
Sbjct: 665 IWGSLLAAC 673


>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 1441

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/618 (34%), Positives = 341/618 (55%), Gaps = 8/618 (1%)

Query: 48  HLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL 104
           ++ S+LV  Y   S +   + +F+ + ER+  L+N ++  +AQNG + + ++ F  M R 
Sbjct: 345 YVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRH 404

Query: 105 GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA 164
           G   PD +T+  +  AC  L +   G  LH  ++   F  + FV N L+ MY   G +K 
Sbjct: 405 GP-QPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKE 463

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
           ARK F+ M  H  VSWN +I GY +  Y  EA  +F  M+ +GV PD  S+ S++ AC  
Sbjct: 464 ARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACAN 523

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           ++E++ G+  H L+    L  +  A ++L+DMYVKCG V  AR VF  M  R+VV+  ++
Sbjct: 524 VQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNAL 583

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN- 343
           I GY + G +  A+ LFQ +Q  G++P  +T   LL  C   + L  GR +H   +K   
Sbjct: 584 IAGYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGF 642

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELF 402
           L    +V  +L+ +Y        S  +F+     K  V W A+++G        KA++ +
Sbjct: 643 LSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFY 702

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
           + M  + + P+ A   S+L A A ++ LQ    IH  +   GF       + LID+Y+KC
Sbjct: 703 QHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKC 762

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G ++ + ++F E+P ++ +++ W+ +I G   +G+ E A+ +FK+M Q  + P+EVTF  
Sbjct: 763 GDVKGSLQVFREMPRRN-NVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLG 821

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
            L ACSH G + EG  +F+ M+ N++   R DH  C+VD+LGR G L+EA + I  +  K
Sbjct: 822 VLSACSHAGRVSEGRKVFDLMVNNYKLLPRVDHLGCMVDILGRWGFLNEAEEFINKLGCK 881

Query: 583 PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642
               +W  LLGAC  HG+   G+ AA  L EL+P++  +YVLLS +Y+    W  A ++R
Sbjct: 882 ADPMLWSTLLGACRKHGDEVRGKRAADKLMELKPQSSSSYVLLSSIYAESENWSGAVSLR 941

Query: 643 DVMDEKGLRKAPAHSLIE 660
             M  KG++K P +S IE
Sbjct: 942 REMKLKGVKKLPGYSWIE 959



 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 154/508 (30%), Positives = 259/508 (50%), Gaps = 43/508 (8%)

Query: 33  KQLHAFIITSGPLF-THLRSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+H  +  +G  F +  +  L+  Y    ++ + R++FD      +  +  ++  Y ++
Sbjct: 162 RQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRD 221

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   +++K+F  M R+G + PD  T   V+ A                            
Sbjct: 222 GFPMEAVKVFDRMQRVG-HAPDQITLVTVVNA---------------------------- 252

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
                  Y+  G +  ARK+F  +   +VV+WN +ISG+ K  +A+EA+  F  + K+G+
Sbjct: 253 -------YVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGL 305

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +   +S+ SVL A   L  +  G M+H       L  N+   +ALV+MY KC  ++ A+ 
Sbjct: 306 KATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQ 365

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VF+ + ER++V W +M+ G+A NG  +  +  F  M+  G +P+  T  S+ SAC+SL+Y
Sbjct: 366 VFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHY 425

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L  G  LH   IK      + V  AL+DMYAK   +K + + F        V WNAI+ G
Sbjct: 426 LNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVG 485

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            V      +A  +FR+M+   V P++ +L S++ A A + +L++    HC L++ G  + 
Sbjct: 486 YVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTS 545

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
               + LID+Y KCG + +A  +F  +P   +++V  + +IAGY M GH E A+ LF+E+
Sbjct: 546 TCAGSSLIDMYVKCGVVLAARDVFYSMP--SRNVVSVNALIAGYTM-GHLEEAIHLFQEI 602

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEG 536
              G++P EVTF   L  C    +L+ G
Sbjct: 603 QMVGLKPTEVTFAGLLDGCDGAFMLNLG 630



 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 171/584 (29%), Positives = 284/584 (48%), Gaps = 46/584 (7%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFL 77
           K V Q  +T  +  +K L   +   G L  ++   L    G+V   +  F  + ++  F 
Sbjct: 51  KPVLQALSTAKVIHSKSLKIGVGLKG-LLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFA 109

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N+V+ MY  +G     ++ F+ M    E  P+ +T+ +V+ AC+ L     G  +H  V
Sbjct: 110 WNSVLSMYLDHGLFATVVQSFVCMWN-HEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGV 168

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
             TGF   +F    LI MY     ++ AR VFD       VSW  LI+GY ++ +  EA+
Sbjct: 169 FKTGFGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAV 228

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
            VFD M + G  PD  ++V+V                                   V+ Y
Sbjct: 229 KVFDRMQRVGHAPDQITLVTV-----------------------------------VNAY 253

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
           V  G + +AR +F ++   +VV W  MI+G+A  G    A+  F  ++  G++    ++G
Sbjct: 254 VALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLG 313

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           S+LSA +SL  L  G  +HA   K+ L+  V V +AL++MYAKC+ +  + QVF    ++
Sbjct: 314 SVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGER 373

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V WNA+L G   NGLA++ +E F  M     +P++ T  S+  A A L  L     +H
Sbjct: 374 NIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLH 433

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
             +I+  F S + V+  L+D+Y+K G+L+ A K F  + I D   V W+ II GY    +
Sbjct: 434 TVMIKNKFASNLFVANALVDMYAKSGALKEARKQFELMKIHDN--VSWNAIIVGYVQEEY 491

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE---NHQTCSRAD 554
            + A  +F+ MV +GV P+EV+  S + AC++   L  G      +++   +  TC+ + 
Sbjct: 492 NDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSS 551

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
               ++D+  + G +  A D+  +MP +   +V   + G  + H
Sbjct: 552 ----LIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTMGH 591


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 230/733 (31%), Positives = 375/733 (51%), Gaps = 85/733 (11%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAG--TKQLHAFIITSGPLFTHLRSSL--VRAYGHVSNVR 64
           L   T L+ +LV+ Y    S++G     L AF     P      ++L   R  G +   R
Sbjct: 39  LGADTFLINRLVELY----SVSGLPCDALRAFRSLPRPNAYSYNAALSAARRAGDLDAAR 94

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
            L DEM +R+   +NTV+   A++  + ++L+++ GMLR G   P ++T   V+ AC  +
Sbjct: 95  ALLDEMPDRNVVSWNTVIAALARSERAGEALELYEGMLREG-LVPTHFTLASVLSACGAV 153

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
           A    G   HG  +  G D + FV N L+ MY   G V+ A ++FD M   + VS+  ++
Sbjct: 154 AALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMM 213

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY--------LKEIEMGRMIHE 236
            G  +     +AL +F  M +SGV  D  +V SVL +C          ++   +G+ IH 
Sbjct: 214 GGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHA 273

Query: 237 LVAGGRLGKN-------------------------------IAAWNALVDMYVKCGS--- 262
           L+     G +                                 +WN L+  + + GS   
Sbjct: 274 LIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAK 333

Query: 263 --------------------------------VNEARLVFDRMSERDVVTWTSMINGYAL 290
                                           V  AR +FD++S   V TW ++++GY  
Sbjct: 334 ALEVLNLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKISRPSVTTWNTLLSGYCQ 393

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
               ++ + LF+ MQ + V+P+  T+  +LS+CS L  L  G  +H+ +++  L  ++ V
Sbjct: 394 EELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHNDMFV 453

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
            + L+DMY+KC  + ++  +F R +++  V WN++++G   + L  +A + F+QM    +
Sbjct: 454 ASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGM 513

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
            P +++  S++ + A L+ + Q   IH  +++ G+   V V + LID+Y+KCG+++ A +
Sbjct: 514 MPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDA-R 572

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           +F +  +  K+IV W+ +I GY  +G GE AV LF+ M+ +  +P+ VTF + L  CSH 
Sbjct: 573 VFFDCMVT-KNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHS 631

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           GL+DE +  FN M   +     A+HYTC++D LGRAGRL E   LI  MP K    VW  
Sbjct: 632 GLVDEAIAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDPIVWEV 691

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LL AC +H N ELGE AAK LF L+P+NP  YVLLS +Y+++ R  DA  VR +M  +G+
Sbjct: 692 LLAACAVHHNAELGECAAKHLFRLDPKNPSPYVLLSNIYASLGRHGDASGVRALMSSRGV 751

Query: 651 RKAPAHSLIEVRN 663
            K   +S I+ ++
Sbjct: 752 VKGRGYSWIDHKD 764


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/568 (35%), Positives = 307/568 (54%), Gaps = 38/568 (6%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  LH  ++  GF+    +   L+  Y NF  +  A  + +       + WN LIS Y +
Sbjct: 112 GKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISSYVR 171

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N    EAL  +  M   G+ PD  +  SVL ACG   +I  G+ +H  +    LG N+  
Sbjct: 172 NGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGWNLFV 231

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
            N+LV MY K G ++ AR +F+ M ERD V+W +MI+GYA  G  + A  LF  M+ EG+
Sbjct: 232 HNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMRVEGI 291

Query: 310 RPNSLTIGSL-----------------------------------LSACSSLYYLKRGRS 334
             N +T  ++                                   L ACS +  +K GR 
Sbjct: 292 ELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIKLGRE 351

Query: 335 LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
           +H   I+   +    V+ ALI MY++C  ++ ++ +F  T  K  + WN++L+G  H   
Sbjct: 352 IHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYTHMDR 411

Query: 395 ARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY-GFLSVVEVST 453
           + +A  LFR+ML+  +EPN  T+ S+LP  A +A+LQ     HCY++R  GF   + +  
Sbjct: 412 SEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWN 471

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            L+D+Y++ G +  A ++F  I  +D+  V ++ +IAGYG+ G G  A+ LF EM +  +
Sbjct: 472 SLVDMYARSGKVLEAKRLFDSISRRDE--VTYTSLIAGYGIQGEGREALKLFDEMKKRHI 529

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
           +P+ VT  + L ACSH GL+ EG+ LF  M   +    R +H+ C+VDL GRAG L +A 
Sbjct: 530 KPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAK 589

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633
           ++I  MP +P+ A+W  LLGAC IHGN E+GE AA+ L E+ PEN G YVL++ +Y+A  
Sbjct: 590 EMITRMPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANMYAAAG 649

Query: 634 RWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            W     VR  M + G+RKAP  + ++V
Sbjct: 650 CWSKLAKVRTYMRDLGVRKAPGCAWVDV 677



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 140/520 (26%), Positives = 248/520 (47%), Gaps = 55/520 (10%)

Query: 27  KSIAGTKQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFD--EMSERSSFL--- 77
           KS++  KQLH  II+ G    P+       LV  Y   +N  +L D   ++E S+ L   
Sbjct: 107 KSLSQGKQLHTLIISLGFEQHPIIV---PKLVTFY---TNFDLLADAHTITENSNILHPL 160

Query: 78  -YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGR 136
            +N ++  Y +NG   ++L  +  M   G   PD +TYP V+KAC +      G  LH  
Sbjct: 161 PWNLLISSYVRNGLHGEALSAYKQMTHKG-IRPDKFTYPSVLKACGEKLDIAFGKKLHAS 219

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEA 196
           +  +    + FV N L++MY   GE+  AR +F+ M E   VSWNT+ISGY      KEA
Sbjct: 220 INASCLGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEA 279

Query: 197 LVVFDWMLKSGVE---------------------------------PDCASVVSV--LPA 221
             +F  M   G+E                                  D  SV ++  L A
Sbjct: 280 FELFGKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGA 339

Query: 222 CGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTW 281
           C ++  I++GR IH               NAL+ MY +C  +  A  +F     ++++TW
Sbjct: 340 CSHIGAIKLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITW 399

Query: 282 TSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
            SM++GY        A  LF+ M   G+ PN +TI S+L  C+ +  L+ G+  H + ++
Sbjct: 400 NSMLSGYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILR 459

Query: 342 Q-NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
           +   +  +++  +L+DMYA+   V  + ++F   S++  V + +++AG    G  R+A++
Sbjct: 460 RAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALK 519

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIY 459
           LF +M    ++P+  T+ ++L A +    + + + +   +   YG +  +E    ++D++
Sbjct: 520 LFDEMKKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLF 579

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            + G L  A ++ + +P +     +W+ ++    +HG+ E
Sbjct: 580 GRAGLLHKAKEMITRMPYRPSS-AMWATLLGACRIHGNAE 618


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/554 (35%), Positives = 306/554 (55%), Gaps = 37/554 (6%)

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
           ++ + +G  L+   +N G+ + A+++FD + +    + +TLIS +       EA+ ++  
Sbjct: 63  NIPSHLGLRLLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYAS 122

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           +   G++P  +  ++V  ACG   +    + +H+      +  +    NAL+  Y KC  
Sbjct: 123 LRARGIKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKC 182

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           V  AR VFD +  +DVV+WTSM + Y   G  R  L +F  M + GV+PNS+T+ S+L A
Sbjct: 183 VEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPA 242

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           CS L  LK GR++H + ++  +   V V +AL+ +YA+C  VK +  VF     +  V W
Sbjct: 243 CSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSW 302

Query: 383 N-----------------------------------AILAGCVHNGLARKAVELFRQMLV 407
           N                                   A++ GC+ NG   KAVE+ R+M  
Sbjct: 303 NGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQN 362

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
              +PN  T++S LPA +IL  L+    +HCY+ R+  +  +   T L+ +Y+KCG L  
Sbjct: 363 LGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNL 422

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           +  +F  I    KD+V W+ +I    MHG+G   + LF+ M+QSG++PN VTFT  L  C
Sbjct: 423 SRNVFDMIC--RKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGC 480

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           SH  L++EGL +FN M  +H     A+HY C+VD+  RAGRL EAY+ I+ MP++PT + 
Sbjct: 481 SHSRLVEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASA 540

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           WGALLGAC ++ NVEL +++A  LFE+EP NPGNYV L  +    + W +A   R +M E
Sbjct: 541 WGALLGACRVYKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKE 600

Query: 648 KGLRKAPAHSLIEV 661
           +G+ K P  S ++V
Sbjct: 601 RGITKTPGCSWLQV 614



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 223/474 (47%), Gaps = 46/474 (9%)

Query: 47  THLRSSLVRAYGHVSNVR---ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR 103
           +HL   L++A  +V + R    LFD + +      +T++  +   G  +++++++   LR
Sbjct: 66  SHLGLRLLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLY-ASLR 124

Query: 104 LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163
                P N  +  V KAC           +H   +  G   D F+GN LI  Y     V+
Sbjct: 125 ARGIKPHNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVE 184

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
            AR+VFD +    VVSW ++ S Y      +  L VF  M  +GV+P+  ++ S+LPAC 
Sbjct: 185 GARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACS 244

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVV---- 279
            LK+++ GR IH       + +N+   +ALV +Y +C SV +ARLVFD M  RDVV    
Sbjct: 245 ELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNG 304

Query: 280 -------------------------------TWTSMINGYALNGDVRNALGLFQLMQFEG 308
                                          TW ++I G   NG    A+ + + MQ  G
Sbjct: 305 VLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLG 364

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
            +PN +TI S L ACS L  L+ G+ +H +  +  L  ++   TAL+ MYAKC  + LS 
Sbjct: 365 FKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSR 424

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
            VF    +K  V WN ++     +G  R+ + LF  ML   ++PN  T   +L   +   
Sbjct: 425 NVFDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSR 484

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTG----LIDIYSKCGSLESAHKIFSEIPIK 478
            +++ + I   +   G   +VE        ++D++S+ G L  A++    +P++
Sbjct: 485 LVEEGLQIFNSM---GRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPME 535



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 127/284 (44%), Gaps = 15/284 (5%)

Query: 66  LFDEMS----ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC 121
           LF +MS    E     +N V+    +NG +  +++M   M  LG + P+  T    + AC
Sbjct: 321 LFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLG-FKPNQITISSFLPAC 379

Query: 122 TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWN 181
           + L   ++G  +H  V       D      L+ MY   G++  +R VFD +    VV+WN
Sbjct: 380 SILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWN 439

Query: 182 TLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG 241
           T+I     +   +E L++F+ ML+SG++P+  +   VL  C + + +E G  I   +   
Sbjct: 440 TMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRD 499

Query: 242 RLGKNIAA-WNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNA-L 298
            L +  A  +  +VD++ + G ++EA     RM  E     W +++    +  +V  A +
Sbjct: 500 HLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKI 559

Query: 299 GLFQLMQFEGVRP-------NSLTIGSLLSACSSLYYLKRGRSL 335
              +L + E   P       N L    L S  S    L + R +
Sbjct: 560 SANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGI 603


>gi|357465513|ref|XP_003603041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492089|gb|AES73292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 729

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/665 (31%), Positives = 361/665 (54%), Gaps = 28/665 (4%)

Query: 1   MNGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY--- 57
           ++ PS    P T  L  + +Q     +   G  Q           F H+ +SL+  Y   
Sbjct: 59  LSSPSFTHCPSTAALQARQIQTQCLKR---GVNQ-----------FIHVHTSLIDLYMKL 104

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G  S+ R +FD+MS R    +N ++  Y+QNG  + ++++F+ MLR   + P+  T   +
Sbjct: 105 GFTSHARNMFDQMSYRDVVSWNVLICGYSQNGYLYHAIQLFVDMLR-ENFKPNQTTIVSL 163

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + +C        G ++HG  +  GF +D+ + N L++MY    +++A++ +FD M E SV
Sbjct: 164 LPSCGCFELIFQGRSIHGFGIKAGFGLDSHLNNALMSMYAKCDDLEASQLLFDEMDEKSV 223

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSWNT+I  Y +N    +A++ F  MLK G  P   ++++++ A  + + +      H  
Sbjct: 224 VSWNTMIGVYGQNGLFDKAILYFKEMLKEGFHPSSVTIMNLVSANAFPENV------HCY 277

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V       + +   +LV +Y K G  N A+ ++     +D++T T++I+ Y+  GD+ +A
Sbjct: 278 VVKCGFTNDASVVTSLVCLYAKQGFTNTAKQLYKYYPTKDLITLTAIISSYSEKGDIESA 337

Query: 298 LGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           +  F Q +Q + ++P+++ +  +L   ++  +   G + H + +K  L  + +V   LI 
Sbjct: 338 VECFIQTIQLD-IKPDAVALIGVLHGITNPSHFAIGCTFHGYGVKSGLSNDCLVANGLIS 396

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           +Y++ + ++ +  +F    +K  + WN++++GCV  G +  A+ELF +M +   +P+  T
Sbjct: 397 LYSRFDEIEAALSLFYDMREKPLITWNSMISGCVQAGKSSDAMELFSEMSMCGKKPDAIT 456

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           + SLL     L +L+    +H Y++R        + T LID+YSKCG L+ A K+F  I 
Sbjct: 457 IASLLSGCCQLGNLRIGETLHSYILRNNVRVEDFIGTALIDMYSKCGRLDYAEKVFYNI- 515

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
            KD  +  W+ II+GY ++G   TA   + ++ + G++P+++TF   L AC+HGGL+  G
Sbjct: 516 -KDPCLATWNAIISGYSLYGLEHTAFGCYSKLQEQGLKPDKITFLGVLAACTHGGLVYLG 574

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
           L+ FN M + +       HY CIV LLG+ G   EA + I  M ++P  AVWGALL AC 
Sbjct: 575 LEYFNIMTKEYGLMPSLQHYACIVALLGKEGLFKEAIEFINKMEIQPDSAVWGALLNACC 634

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           I   V+LGE  AK LF L  +N G YVL+S LY+ V RW D   VR++M + G       
Sbjct: 635 IQREVKLGECLAKKLFLLNHKNGGFYVLMSNLYAIVGRWDDVARVREMMKDSGGDGCSGV 694

Query: 657 SLIEV 661
           S+I+V
Sbjct: 695 SVIDV 699



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 153/521 (29%), Positives = 254/521 (48%), Gaps = 25/521 (4%)

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKA---------CTDLAWRKLGIALHGRVLIT 140
           A+  +L +F  +L+    NP+ +T+ ++IKA         C   A  +    +  + L  
Sbjct: 28  ATSPALVIFRQILQ-ANVNPNEFTFSLLIKAYLSSPSFTHCPSTAALQ-ARQIQTQCLKR 85

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           G +    V   LI +YM  G    AR +FD M    VVSWN LI GY +N Y   A+ +F
Sbjct: 86  GVNQFIHVHTSLIDLYMKLGFTSHARNMFDQMSYRDVVSWNVLICGYSQNGYLYHAIQLF 145

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
             ML+   +P+  ++VS+LP+CG  + I  GR IH        G +    NAL+ MY KC
Sbjct: 146 VDMLRENFKPNQTTIVSLLPSCGCFELIFQGRSIHGFGIKAGFGLDSHLNNALMSMYAKC 205

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
             +  ++L+FD M E+ VV+W +MI  Y  NG    A+  F+ M  EG  P+S+TI +L+
Sbjct: 206 DDLEASQLLFDEMDEKSVVSWNTMIGVYGQNGLFDKAILYFKEMLKEGFHPSSVTIMNLV 265

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           SA +         ++H + +K     +  V T+L+ +YAK      + Q++     K  +
Sbjct: 266 SANA------FPENVHCYVVKCGFTNDASVVTSLVCLYAKQGFTNTAKQLYKYYPTKDLI 319

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
              AI++     G    AVE F Q +   ++P+   L  +L      +        H Y 
Sbjct: 320 TLTAIISSYSEKGDIESAVECFIQTIQLDIKPDAVALIGVLHGITNPSHFAIGCTFHGYG 379

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           ++ G  +   V+ GLI +YS+   +E+A  +F +  +++K ++ W+ +I+G    G    
Sbjct: 380 VKSGLSNDCLVANGLISLYSRFDEIEAALSLFYD--MREKPLITWNSMISGCVQAGKSSD 437

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TC 558
           A+ LF EM   G +P+ +T  S L  C   G L  G  L +++L N+    R + +  T 
Sbjct: 438 AMELFSEMSMCGKKPDAITIASLLSGCCQLGNLRIGETLHSYILRNN---VRVEDFIGTA 494

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           ++D+  + GRLD A  +   +   P  A W A++    ++G
Sbjct: 495 LIDMYSKCGRLDYAEKVFYNIK-DPCLATWNAIISGYSLYG 534


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/616 (32%), Positives = 326/616 (52%), Gaps = 70/616 (11%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           Y  ++K C +         LH  ++ T    +TF+ N LI+ Y   G +  A KVFD M 
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWM-LKSGVEPDCASVVSVLPACGYLKE----- 227
             ++ SWNT++S Y K     E   +FD M  + GV  +  S++S    CG + +     
Sbjct: 72  HPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWN--SLISGYAGCGLIYQSVKAY 129

Query: 228 -----------------------------IEMGRMIHELVAG-----------------G 241
                                        +++GR IH  V                    
Sbjct: 130 NLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYS 189

Query: 242 RLG--------------KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           ++G              KN+  +N L+   ++CG V +++ +F  M ERD ++WTSMI G
Sbjct: 190 KMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITG 249

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           +  NG  R+A+ +F+ M+ E ++ +  T GS+L+AC  +  L+ G+ +HA+ I+ + +  
Sbjct: 250 FTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDN 309

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           + V +AL+DMY KC  +K +  VF + + K  V W A+L G   NG + +AV+ F  M  
Sbjct: 310 IFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQK 369

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
             +EP+D TL S++ + A LA L++    H   +  G +S + VS  L+ +Y KCGS+E 
Sbjct: 370 YGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIED 429

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           +H++F+EI  KD+  V W+ +++GY   G     + LF+ M+  G++P++VTF   L AC
Sbjct: 430 SHRLFNEISFKDE--VTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSAC 487

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           S  GL+++G  +F  M+  H      DHYTC++DL  RAGR++EA + I  MP  P    
Sbjct: 488 SRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAIS 547

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           W  LL +C  +GN+++G+ AA++L EL+P N  +YVLLS +Y+A  +W++   +R  M +
Sbjct: 548 WATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRD 607

Query: 648 KGLRKAPAHSLIEVRN 663
           KGLRK P  S I+ +N
Sbjct: 608 KGLRKEPGCSWIKYKN 623



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 153/529 (28%), Positives = 262/529 (49%), Gaps = 45/529 (8%)

Query: 8   TLP-KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRS--SLVRAY---GHVS 61
           TLP   T L+  L+  YA   SI      +A  +       +L S  +++ AY   G VS
Sbjct: 38  TLPYPETFLLNNLISSYAKLGSIP-----YACKVFDQMPHPNLYSWNTILSAYSKLGRVS 92

Query: 62  NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR-LGEYNPDNYTYPIVIKA 120
            +  LFD M  R    +N+++  YA  G  + S+K +  ML+  G +N +  T+  ++  
Sbjct: 93  EMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITFSTLLIL 152

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV-- 178
            +     KLG  +HG V+  GF    FVG+ L+ MY   G +  ARKVFD + E +VV  
Sbjct: 153 ASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMY 212

Query: 179 -----------------------------SWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
                                        SW ++I+G+ +N   ++A+ +F  M    ++
Sbjct: 213 NTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQ 272

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
            D  +  SVL ACG +  ++ G+ +H  +       NI   +ALVDMY KC ++  A  V
Sbjct: 273 MDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAV 332

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F +M+ ++VV+WT+M+ GY  NG    A+  F  MQ  G+ P+  T+GS++S+C++L  L
Sbjct: 333 FKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASL 392

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           + G   HA  +   L   + V  AL+ +Y KC  ++ S ++F   S K  V W A+++G 
Sbjct: 393 EEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGY 452

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI-RYGFLSV 448
              G A + + LF  ML   ++P+  T   +L A +    +++   I   +I  +G + +
Sbjct: 453 AQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPI 512

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            +  T +ID++S+ G +E A    +++P    D + W+ +++    +G+
Sbjct: 513 QDHYTCMIDLFSRAGRIEEARNFINKMPF-SPDAISWATLLSSCRFYGN 560


>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Vitis vinifera]
          Length = 729

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 227/694 (32%), Positives = 365/694 (52%), Gaps = 55/694 (7%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLV-------- 54
           P H TL  T      L  +YAA+ +     QLHA+ I +G   +TH+ ++L+        
Sbjct: 51  PDHFTLSSTLTACANL--RYAASGN-----QLHAYSIQTGLKAYTHVGNTLLSFYAKSKD 103

Query: 55  -----RAYGHVSNVRI---------------------LFDEMSERSSFLYNTVMKMYAQN 88
                R +  + N  +                     LF++       ++N ++   A+N
Sbjct: 104 LVSVQRVFNEIENPDVYSWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNAIITGCAEN 163

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
             +  +L +F  M +LG    D YT+  V+  C+ L     G  +H  V+ TGF +   V
Sbjct: 164 KHTEIALNLFREMHQLG-VRHDKYTFASVLSLCS-LELLDFGREVHTLVIKTGFLVRASV 221

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWE--HSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
            N L+ MY N G+V  A +VF+      H  +++N +I G       +EAL++F  M ++
Sbjct: 222 INALLTMYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALIMFKEMQEA 281

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
            + P   + VSV+ +C   +   +   +H               NA + MY  CG+++  
Sbjct: 282 CLRPTELTFVSVMSSCSSAR---VSHQVHAQAIKMGFEACTPVSNAAMTMYSSCGNLHAV 338

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
            +VFDR+ E+D+++W  +I  YA     R A+  F  MQ  G+ P+  TIGSLL++  SL
Sbjct: 339 HMVFDRLEEKDLISWNIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGSLLASSESL 398

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             +K  ++L +   K  L  ++ V  AL+  ++K   ++ ++QVF   S    + WN I+
Sbjct: 399 EIVKMFQALVS---KNGLNSKIEVSNALVSAFSKHGQIEQAYQVFNNMSSPNLISWNTII 455

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           +G + NG   + +E F ++L+  ++PN  TL+ +L   A ++ L+    IH Y++R G  
Sbjct: 456 SGFLFNGFTLQGLEQFYELLMSTLKPNAYTLSIVLSICASISALRHGKQIHGYILRSGVF 515

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           SV  +   LI +Y+KCG L+ + +IF+   +  +DIV W+ +I+ Y  HG G+ AV  FK
Sbjct: 516 SVTSLGNALITMYAKCGDLDWSLRIFN--VMNGRDIVSWNAMISAYAQHGKGKEAVHFFK 573

Query: 507 EMVQSG-VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
            M  SG V+P++ TFT+ L ACSH GL+D+G  +FN M+ ++     ADH +CIVDLLGR
Sbjct: 574 AMQDSGGVKPDQATFTAVLSACSHAGLVDDGTRIFNSMVNDYGFEPGADHLSCIVDLLGR 633

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           AG L+EA  LI +  LK   ++W  L  AC  HGN+ LG + A +L E+E  +P  YVLL
Sbjct: 634 AGYLEEAERLINSKHLKIVSSIWWTLFSACAAHGNLRLGRIVAGFLLEIEQNDPAVYVLL 693

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           S +Y+A  +W++A N RD+M +  + K P  S I
Sbjct: 694 SNIYAAAGQWEEAANTRDLMQKTRVAKQPGCSWI 727



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 153/578 (26%), Positives = 252/578 (43%), Gaps = 76/578 (13%)

Query: 94  SLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLI 153
           S+++F+ +       PD++T    + AC +L +   G  LH   + TG    T VGN L+
Sbjct: 36  SVQLFVQIHSSNYLKPDHFTLSSTLTACANLRYAASGNQLHAYSIQTGLKAYTHVGNTLL 95

Query: 154 AMYMNFGEVKAARKVFDAMWEHSVVSWNTL------------------------------ 183
           + Y    ++ + ++VF+ +    V SW TL                              
Sbjct: 96  SFYAKSKDLVSVQRVFNEIENPDVYSWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNA 155

Query: 184 -ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
            I+G  +N + + AL +F  M + GV  D  +  SVL  C  L+ ++ GR +H LV    
Sbjct: 156 IITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVLSLCS-LELLDFGREVHTLVIKTG 214

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE--RDVVTWTSMINGYALNGDVRNALGL 300
                +  NAL+ MY   G V +A  VF+       D +T+  MI G A  G    AL +
Sbjct: 215 FLVRASVINALLTMYFNSGKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALIM 274

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
           F+ MQ   +RP  LT  S++S+CSS    +    +HA  IK   E    V  A + MY+ 
Sbjct: 275 FKEMQEACLRPTELTFVSVMSSCSS---ARVSHQVHAQAIKMGFEACTPVSNAAMTMYSS 331

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           C  +     VF R  +K  + WN I+         R A+  F QM    +EP++ T+ SL
Sbjct: 332 CGNLHAVHMVFDRLEEKDLISWNIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGSL 391

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L +   L  ++        + + G  S +EVS  L+  +SK G +E A+++F+   +   
Sbjct: 392 LASSESLEIVKM---FQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQVFNN--MSSP 446

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS-----------H 529
           +++ W+ II+G+  +G     +  F E++ S ++PN  T +  L  C+           H
Sbjct: 447 NLISWNTIISGFLFNGFTLQGLEQFYELLMSTLKPNAYTLSIVLSICASISALRHGKQIH 506

Query: 530 GGLLDEGL----DLFNFMLENHQTCSRAD---------------HYTCIVDLLGRAGRLD 570
           G +L  G+     L N ++  +  C   D                +  ++    + G+  
Sbjct: 507 GYILRSGVFSVTSLGNALITMYAKCGDLDWSLRIFNVMNGRDIVSWNAMISAYAQHGKGK 566

Query: 571 EAYDLIRTMP----LKPTHAVWGALLGACVIHGNVELG 604
           EA    + M     +KP  A + A+L AC   G V+ G
Sbjct: 567 EAVHFFKAMQDSGGVKPDQATFTAVLSACSHAGLVDDG 604


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/639 (34%), Positives = 352/639 (55%), Gaps = 14/639 (2%)

Query: 34  QLHAFIIT---SGPLFTHLRSSLVRAYG---HVSNVRILFDEMS-ERSSFLYNTVMKMYA 86
           Q+HA  ++   SG +F  + ++LV  YG    V   R +FDE + +R++  +N +M  + 
Sbjct: 121 QVHAVAVSTGLSGDIF--VANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFV 178

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           +N    D++++F  M+  G   P+ + +  V+ ACT     + G  +H  V+ TG+D D 
Sbjct: 179 KNDRCSDAVELFGEMVWSG-VRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDV 237

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
           F  N L+ MY   G++  A  VF  + +  VVSWN  ISG   + + + AL +   M  S
Sbjct: 238 FTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSS 297

Query: 207 GVEPDCASVVSVLPACGYLKEIEMG--RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
           G+ P+  ++ S+L AC           R IH  +       +     ALVDMY K G ++
Sbjct: 298 GLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLD 357

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
           +AR VF+ +  +D++ W ++I+G +  G    +L LF  M+ EG   N  T+ ++L + +
Sbjct: 358 DARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTA 417

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
           SL  +     +HA   K     +  V   LID Y KCN ++ + +VF   S    + + +
Sbjct: 418 SLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTS 477

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           ++           A++LF +ML + +EP+   L+SLL A A L+  +Q   +H +LI+  
Sbjct: 478 MITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRK 537

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
           F++ V     L+  Y+KCGS+E A   FS +P  DK +V WS +I G   HGHG+ A+ +
Sbjct: 538 FMTDVFAGNALVYTYAKCGSIEDADLAFSGLP--DKGVVSWSAMIGGLAQHGHGKRALDV 595

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           F+ MV   + PN +T TS L AC+H GL+DE    F+ M E        +HY+C++DLLG
Sbjct: 596 FRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLG 655

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
           RAG+LD+A +L+ +MP +   AVWGALL A  +H + ELG++AA+ LF LEPE  G +VL
Sbjct: 656 RAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGTHVL 715

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           L+  Y++   W +   VR +M +  ++K PA S +E+++
Sbjct: 716 LANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKD 754



 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 184/596 (30%), Positives = 307/596 (51%), Gaps = 15/596 (2%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHV---SNVRILF 67
           ++   +  L+ +YAAT+S+     +HA ++ SG L    R+ L+  Y       + R +F
Sbjct: 2   RSPESISPLLTRYAATQSLFLGAHIHAHLLKSG-LLHAFRNHLLSFYSKCRLPGSARRVF 60

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           DE  +     +++++  Y+ N    ++L  F  M   G    + +  PIV+K   D    
Sbjct: 61  DETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARG-VRCNEFALPIVLKCAPDAG-- 117

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD-AMWEHSVVSWNTLISG 186
            LG+ +H   + TG   D FV N L+AMY  FG V  AR+VFD A  + + VSWN ++S 
Sbjct: 118 -LGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSA 176

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
           + KN    +A+ +F  M+ SGV P+      V+ AC   +++E GR +H +V      K+
Sbjct: 177 FVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKD 236

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           +   NALVDMY K G ++ A LVF ++ + DVV+W + I+G  L+G  ++AL L   M+ 
Sbjct: 237 VFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKS 296

Query: 307 EGVRPNSLTIGSLLS--ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
            G+ PN  T+ S+L   A +       GR +H + IK   + +  +  AL+DMYAK  L+
Sbjct: 297 SGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLL 356

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
             + +VF    +K  + WNA+++GC H G   +++ LF +M  E  + N  TL ++L + 
Sbjct: 357 DDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKST 416

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           A L  +     +H    + GFLS   V  GLID Y KC  L  A+K+F E      +I+ 
Sbjct: 417 ASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEE--HSSDNIIA 474

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           ++ +I       HGE A+ LF EM++ G++P+    +S L+AC+     ++G  +   ++
Sbjct: 475 FTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 534

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           +  +  +       +V    + G +++A      +P K     W A++G    HG+
Sbjct: 535 KR-KFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGV-VSWSAMIGGLAQHGH 588


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/549 (34%), Positives = 309/549 (56%), Gaps = 6/549 (1%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           +++ CT       G  +H  +L +G  ++    N LI MY    E   A KVFD+M E +
Sbjct: 12  ILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERN 71

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           VVSW+ L+SG+  N   K +L +F  M + G+ P+  +  + L ACG L  +E G  IH 
Sbjct: 72  VVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHG 131

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
                     +   N+LVDMY KCG +NEA  VF R+ +R +++W +MI G+   G    
Sbjct: 132 FCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSK 191

Query: 297 ALGLFQLMQFEGV--RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC--EVIVET 352
           AL  F +MQ   +  RP+  T+ SLL ACSS   +  G+ +H + ++    C     +  
Sbjct: 192 ALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITG 251

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           +L+D+Y KC  +  + + F +  +K  + W++++ G    G   +A+ LF+++     + 
Sbjct: 252 SLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQI 311

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           +   L+S++  +A  A L+Q   +    ++        V   ++D+Y KCG ++ A K F
Sbjct: 312 DSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCF 371

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
           +E+ +KD  ++ W+V+I GYG HG G+ +V +F EM++  ++P+EV + + L ACSH G+
Sbjct: 372 AEMQLKD--VISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGM 429

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           + EG +LF+ +LE H    R +HY C+VDLLGRAGRL EA  LI TMP+KP   +W  LL
Sbjct: 430 IKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLL 489

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
             C +HG++ELG+   K L  ++ +NP NYV++S LY     W +  N R++ + KGL+K
Sbjct: 490 SLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKK 549

Query: 653 APAHSLIEV 661
               S +E+
Sbjct: 550 EAGMSWVEI 558



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 138/472 (29%), Positives = 247/472 (52%), Gaps = 11/472 (2%)

Query: 34  QLHAFIITSGPLFTHLRSS-LVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNG 89
           Q+H +++ SG     + S+ L+  Y       +   +FD M ER+   ++ +M  +  NG
Sbjct: 27  QVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNG 86

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
               SL +F  M R G Y P+ +T+   +KAC  L   + G+ +HG  L  GF+M   VG
Sbjct: 87  DLKGSLSLFSEMGRQGIY-PNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVG 145

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N L+ MY   G +  A KVF  + + S++SWN +I+G+    Y  +AL  F  M ++ ++
Sbjct: 146 NSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIK 205

Query: 210 --PDCASVVSVLPACGYLKEIEMGRMIHELV--AGGRLGKNIAAWNALVDMYVKCGSVNE 265
             PD  ++ S+L AC     I  G+ IH  +  +G     +     +LVD+YVKCG +  
Sbjct: 206 ERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFS 265

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           AR  FD++ E+ +++W+S+I GYA  G+   A+GLF+ +Q    + +S  + S++   + 
Sbjct: 266 ARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFAD 325

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
              L++G+ + A  +K     E  V  +++DMY KC LV  + + FA    K  + W  +
Sbjct: 326 FALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVV 385

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YG 444
           + G   +GL +K+V +F +ML   +EP++    ++L A +    +++   +   L+  +G
Sbjct: 386 ITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHG 445

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
               VE    ++D+  + G L+ A  +   +PIK  ++ +W  +++   +HG
Sbjct: 446 IKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIK-PNVGIWQTLLSLCRVHG 496



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/472 (29%), Positives = 229/472 (48%), Gaps = 43/472 (9%)

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           ++VS+L  C      + G  +H  +     G N+   N L+DMY KC     A  VFD M
Sbjct: 8   NLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSM 67

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
            ER+VV+W+++++G+ LNGD++ +L LF  M  +G+ PN  T  + L AC  L  L++G 
Sbjct: 68  PERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGL 127

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            +H + +K   E  V V  +L+DMY+KC  +  + +VF R   +  + WNA++AG VH G
Sbjct: 128 QIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAG 187

Query: 394 LARKAVELFRQMLVEVVE--PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF--LSVV 449
              KA++ F  M    ++  P++ TL SLL A +    +     IH +L+R GF   S  
Sbjct: 188 YGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSA 247

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            ++  L+D+Y KCG L SA K F +  IK+K ++ WS +I GY   G    A+ LFK + 
Sbjct: 248 TITGSLVDLYVKCGYLFSARKAFDQ--IKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQ 305

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDL---------------FNFMLENHQTCSRAD 554
           +   Q +    +S +   +   LL +G  +                N +++ +  C   D
Sbjct: 306 ELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVD 365

Query: 555 H---------------YTCIVDLLGRAGRLDEA----YDLIRTMPLKPTHAVWGALLGAC 595
                           +T ++   G+ G   ++    Y+++R   ++P    + A+L AC
Sbjct: 366 EAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRH-NIEPDEVCYLAVLSAC 424

Query: 596 VIHGNVELGEVAAKWLFELEPENP--GNYVLLSKLYSAVRRWKDAENVRDVM 645
              G ++ GE     L E     P   +Y  +  L     R K+A+++ D M
Sbjct: 425 SHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTM 476



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 146/286 (51%), Gaps = 13/286 (4%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY---GHVSNVRILFDEMSE 72
           L++  ++T  I   KQ+H F++ SG   P    +  SLV  Y   G++ + R  FD++ E
Sbjct: 216 LLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKE 275

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNP--DNYTYPIVIKACTDLAWRKLG 130
           ++   +++++  YAQ G   +++ +F    RL E N   D++    +I    D A  + G
Sbjct: 276 KTMISWSSLILGYAQEGEFVEAMGLF---KRLQELNSQIDSFALSSIIGVFADFALLRQG 332

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
             +    +     ++T V N ++ MY+  G V  A K F  M    V+SW  +I+GY K+
Sbjct: 333 KQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKH 392

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAA 249
              K+++ +F  ML+  +EPD    ++VL AC +   I+ G  +  +L+    +   +  
Sbjct: 393 GLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEH 452

Query: 250 WNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDV 294
           +  +VD+  + G + EA+ + D M  + +V  W ++++   ++GD+
Sbjct: 453 YACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDI 498


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/597 (34%), Positives = 339/597 (56%), Gaps = 5/597 (0%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG-EYNPDNYTYPIVIKACTDLAWRK 128
           M +R++  + T+++ Y Q+    + + +F  + R G E NP  + +  ++K    +   +
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNP--FVFTTILKLLVSVECAE 58

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
           L  +LH  +   G + + FVG  LI  Y   G V +AR+ FDA+    +VSW  +++ Y 
Sbjct: 59  LAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYA 118

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           +N   +++L +F  M   G  P+  +   VL AC  L+   +G+ +H  V       ++ 
Sbjct: 119 ENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLY 178

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
               L+D+Y K G  N+   VF+ M + DV+ W+ MI+ YA +   R A+ LF  M+   
Sbjct: 179 VGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAF 238

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           V PN  T  S+L +C+S+  L+ G+ +H   +K  L+  V V  AL+D+YAKC  +  S 
Sbjct: 239 VLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSM 298

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           ++F     +  V WN ++ G V +G   KA+ L++ ML   V+ ++ T +S+L A A LA
Sbjct: 299 KLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLA 358

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            ++    IH   ++  +   V V   LID+Y+KCGS+++A  +F    + ++D + W+ +
Sbjct: 359 AMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFD--MLSERDEISWNAM 416

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           I+GY MHG    A+  F+ M ++   PN++TF S L ACS+ GLLD G + F  M++++ 
Sbjct: 417 ISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYG 476

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAA 608
                +HYTC+V LLGR+G LD+A  LI  +PL+P   VW ALLGACVIH +V+LG ++A
Sbjct: 477 IEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSA 536

Query: 609 KWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           + + +++P++   +VLLS +Y+  RRW    +VR  M  KG++K P  S IE + I+
Sbjct: 537 QQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIV 593



 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 145/471 (30%), Positives = 266/471 (56%), Gaps = 8/471 (1%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++L+ AY   G V++ R  FD ++ +    +  ++  YA+N    DSL++F  M  +G +
Sbjct: 80  TALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVG-F 138

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
           NP+++T+  V+KAC  L    +G ++HG VL T ++MD +VG  L+ +Y  FG+     +
Sbjct: 139 NPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLR 198

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VF+ M +H V+ W+ +IS Y ++  ++EA+ +F  M ++ V P+  +  SVL +C  ++ 
Sbjct: 199 VFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIEN 258

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +++G+ +H  V    L  N+   NAL+D+Y KCG ++ +  +F  +  R+ VTW +MI G
Sbjct: 259 LQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVG 318

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y  +GD   AL L++ M    V+ + +T  S+L AC+SL  ++ G  +H+ ++K   + +
Sbjct: 319 YVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKD 378

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           V+V  ALIDMYAKC  +K +  VF   S++  + WNA+++G   +GL  +A++ F+ M  
Sbjct: 379 VVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQE 438

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLE 466
               PN  T  S+L A +    L    N    +++ YG    +E  T ++ +  + G L+
Sbjct: 439 TECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLD 498

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
            A K+  EIP+ + ++ VW  ++    +H   +  +   ++++Q  + P +
Sbjct: 499 KAVKLIEEIPL-EPNVKVWRALLGACVIHNDVDLGIMSAQQILQ--IDPQD 546


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/665 (32%), Positives = 347/665 (52%), Gaps = 16/665 (2%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAYGH--- 59
           P + TLP        + +  A    +   + +HA  + +G      + ++L+  YG    
Sbjct: 193 PDNFTLPC-------VAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGF 245

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN--PDNYTYPIV 117
           V +   +F+ M  R+   +N+VM   ++NG   +   +F  +L   E    PD  T   V
Sbjct: 246 VESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTV 305

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           I AC  +   ++G+ +HG     G   +  V N L+ MY   G +  AR +FD     +V
Sbjct: 306 IPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNV 365

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           VSWNT+I GY K    +    +   M +   V  +  +V++VLPAC    ++   + IH 
Sbjct: 366 VSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHG 425

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
                   K+    NA V  Y KC S++ A  VF  M  + V +W ++I  +A NG    
Sbjct: 426 YAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGK 485

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           +L LF +M   G+ P+  TIGSLL AC+ L +L+ G+ +H + ++  LE +  +  +L+ 
Sbjct: 486 SLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMS 545

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           +Y +C+ + L   +F +   K  V WN ++ G   N L  +A++ FRQML   ++P +  
Sbjct: 546 LYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIA 605

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           +  +L A + ++ L+    +H + ++        V+  LID+Y+KCG +E +  IF  + 
Sbjct: 606 VTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRV- 664

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
             +KD  VW+VIIAGYG+HGHG  A+ LF+ M   G +P+  TF   L AC+H GL+ EG
Sbjct: 665 -NEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEG 723

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
           L     M   +    + +HY C+VD+LGRAG+L EA  L+  MP +P   +W +LL +C 
Sbjct: 724 LKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCR 783

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
            +G++E+GE  +K L ELEP    NYVLLS LY+ + +W +   VR  M E GL K    
Sbjct: 784 NYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGC 843

Query: 657 SLIEV 661
           S IE+
Sbjct: 844 SWIEI 848



 Score =  311 bits (797), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 196/604 (32%), Positives = 321/604 (53%), Gaps = 19/604 (3%)

Query: 27  KSIAGTKQLHAFIITSGPLFTH--LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTV 81
           K+I   +++HA +  S  L     L + ++  Y   G  S+ R +FD   E+  FLYN +
Sbjct: 106 KNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNAL 165

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           +  Y++N    D++ +FL +L   +  PDN+T P V KAC  +A  +LG A+H   L  G
Sbjct: 166 LSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAG 225

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
              D FVGN LIAMY   G V++A KVF+ M   ++VSWN+++    +N    E   VF 
Sbjct: 226 GFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFK 285

Query: 202 WMLKS---GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
            +L S   G+ PD A++V+V+PAC  + E+ MG ++H L     + + +   N+LVDMY 
Sbjct: 286 RLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYS 345

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF-EGVRPNSLTIG 317
           KCG + EAR +FD    ++VV+W ++I GY+  GD R    L Q MQ  E VR N +T+ 
Sbjct: 346 KCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVL 405

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           ++L ACS  + L   + +H +  +     + +V  A +  YAKC+ +  + +VF     K
Sbjct: 406 NVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGK 465

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
               WNA++     NG   K+++LF  M+   ++P+  T+ SLL A A L  L+    IH
Sbjct: 466 TVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIH 525

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            +++R G      +   L+ +Y +C S+     IF +  +++K +V W+V+I G+  +  
Sbjct: 526 GFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDK--MENKSLVCWNVMITGFSQNEL 583

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
              A+  F++M+  G++P E+  T  L ACS    L  G ++ +F L+ H   S     T
Sbjct: 584 PCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAH--LSEDAFVT 641

Query: 558 C-IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
           C ++D+  + G ++++ ++   +  K   AVW  ++    IHG+     + A  LFEL  
Sbjct: 642 CALIDMYAKCGCMEQSQNIFDRVNEK-DEAVWNVIIAGYGIHGH----GLKAIELFELMQ 696

Query: 617 ENPG 620
              G
Sbjct: 697 NKGG 700



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 101/317 (31%), Positives = 173/317 (54%), Gaps = 8/317 (2%)

Query: 218 VLPACGYLKEIEMGRMIHELV-AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER 276
           +L ACG+ K I +GR +H LV A  +L  ++     ++ MY  CGS +++R VFD   E+
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK 157

Query: 277 DVVTWTSMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
           D+  + ++++GY+ N   R+A+ LF +L+    + P++ T+  +  AC+ +  ++ G ++
Sbjct: 158 DLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAV 217

Query: 336 HAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLA 395
           HA  +K     +  V  ALI MY KC  V+ + +VF     +  V WN+++  C  NG  
Sbjct: 218 HALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGF 277

Query: 396 RKAVELFRQMLVEVVE---PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
            +   +F+++L+   E   P+ AT+ +++PA A + +++  M +H    + G    V V+
Sbjct: 278 GECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVN 337

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV-QS 511
             L+D+YSKCG L  A  +F       K++V W+ II GY   G       L +EM  + 
Sbjct: 338 NSLVDMYSKCGYLGEARALFD--MNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREE 395

Query: 512 GVQPNEVTFTSALHACS 528
            V+ NEVT  + L ACS
Sbjct: 396 KVRVNEVTVLNVLPACS 412



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 142/299 (47%), Gaps = 20/299 (6%)

Query: 291 NGDVRNALGLFQLMQFEGVRPNS----LTIGSLLSACSSLYYLKRGRSLHAW-TIKQNLE 345
           +G++ +AL L       G   +S      IG LL AC     +  GR +HA  +    L 
Sbjct: 66  SGNLNDALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLR 125

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
            +V++ T +I MY+ C     S  VF    +K    +NA+L+G   N L R A+ LF ++
Sbjct: 126 NDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLEL 185

Query: 406 LVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           L    + P++ TL  +  A A +AD++    +H   ++ G  S   V   LI +Y KCG 
Sbjct: 186 LSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGF 245

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV---QSGVQPNEVTFT 521
           +ESA K+F    ++++++V W+ ++     +G       +FK ++   + G+ P+  T  
Sbjct: 246 VESAVKVFE--TMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMV 303

Query: 522 SALHACSHGGLLDEGLDL----FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
           + + AC+  G +  G+ +    F   +    T + +     +VD+  + G L EA  L 
Sbjct: 304 TVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNS-----LVDMYSKCGYLGEARALF 357


>gi|225441321|ref|XP_002274344.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 739

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/652 (32%), Positives = 360/652 (55%), Gaps = 18/652 (2%)

Query: 25  ATKSIAGTKQLHA-FIITSGPLFTHLRSSLVRAYGHVSNVRILF---DEMSERSSFLYNT 80
           +  ++   K++HA  I++SG     + S L+  Y  +++ R  F   +   E ++ ++N+
Sbjct: 60  SCNNLQALKRIHASLIVSSGFQPLSVASKLITLYSQLNDFRSAFSICNSFEEPNTVIWNS 119

Query: 81  VMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR-KLGIALHGRVLI 139
           ++K +  +G    +L  +  M  LG  + D++T+PI+ +A   L  R + G  +H   + 
Sbjct: 120 IIKSHVDSGLFGYALLQYGRMRELGVAH-DSFTFPIINQAIWSLGCRVEYGETVHCVAMK 178

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
            GF  D + GN ++ +Y+  G +  A K+FD M    +VSW ++ISGY           +
Sbjct: 179 MGFGQDVYFGNTMLEVYVKCGSIGNASKLFDEMTHRDLVSWTSIISGYIYGESFSRGFKL 238

Query: 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVK 259
           F+ M +  +EP+  ++V +L AC   + +  GR +H  V       + +  N+++ MY K
Sbjct: 239 FNKM-RMEMEPNSVTMVVMLQACSAFESVNEGRELHSYVIKKGFMVDRSVQNSILRMYTK 297

Query: 260 CG-SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP-NSLTIG 317
            G S  E    F  + ERD+++W  +I  Y+  GD+      F  M+ E      SLT+ 
Sbjct: 298 TGGSGEEVETFFSEIEERDIISWNILIAFYSFRGDIAEVAERFNEMRREVTSSIESLTL- 356

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
            ++SA ++   L  G  LH   IK  L  + ++ T L+ +YAKC  +++S Q+F     +
Sbjct: 357 -VVSAIANCANLSEGGMLHCSAIKTGLH-DTVLMTCLLALYAKCGALEISAQLFRDIPHR 414

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
            ++ W+++++G   NG  ++A+EL++QML   ++PN   +++L+ AY  L  LQ     H
Sbjct: 415 NSITWSSMMSGFTQNGFFKEAIELYQQMLASGLQPNHDIISTLVIAYTHLGALQLGKATH 474

Query: 438 CYLIR----YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
            + IR    +       + T L+++Y +CGS+ SA   F+ + +KD  +V W+ +I G+G
Sbjct: 475 AFFIRNLSSWPEEDSAPLETSLLNMYIRCGSISSALICFNRVVVKD--VVTWTSMIEGFG 532

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
            HG    A+  FK M++S VQPN VTF S L ACSH GL+ EG ++F+ M    +     
Sbjct: 533 THGLAFEALKFFKSMLESEVQPNSVTFLSLLSACSHSGLVREGCEVFHSMKWGFRIEPDL 592

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
           +HYTC+VDLLGR+G+L EA  +I  +   P   +WGALL A  +H + +LGE AA+ L E
Sbjct: 593 NHYTCMVDLLGRSGKLKEALTVILKLVTCPDSRIWGALLAASRVHEDKKLGEYAAEKLLE 652

Query: 614 LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           LEP+N G Y L S + +++ RW + E VR VM E+ L+K P  S IEV+ ++
Sbjct: 653 LEPDNVGYYTLWSNIEASLERWGEVEEVRRVMHERDLKKKPGWSCIEVKGMI 704


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 220/607 (36%), Positives = 340/607 (56%), Gaps = 12/607 (1%)

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
           VR +FD M +R+   +NT++  Y +     ++ KMF  M+R+G   P   ++  V  A  
Sbjct: 171 VRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMG-IRPTPVSFVNVFPAVW 229

Query: 123 DLAWRKLGIALHGRVLITGFDM--DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
            +        L+G V+  G D   D FV +  I MY   G V  AR++FD   E +   W
Sbjct: 230 RMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVW 289

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           NT+I GY +N    EA+ +F  +++S     D  + +S L A   L+ +++GR +H  + 
Sbjct: 290 NTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYIL 349

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
                  +   NA++ MY +CGS+  +  VF  M ERDVVTW +M++ +  NG     L 
Sbjct: 350 KSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLM 409

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           L   MQ +G   +S+T+ +LLS  S+L   + G+  HA+ I+  ++ E + +  LIDMYA
Sbjct: 410 LVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGM-DGYLIDMYA 468

Query: 360 KCNLVKLSFQVFARTS--KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           K  L+  + Q+F + S   +    WNA++AG   NGL+ +   +FR+M+ + V PN  TL
Sbjct: 469 KSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTL 528

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            S+LPA   +  +     IH + IR      V V T L+D+YSK G++  A  +F+E   
Sbjct: 529 ASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAET-- 586

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            +K+ V ++ +I  YG HG GE A+SLF  M+ SG++P+ VTF + L ACS+ GL+DEGL
Sbjct: 587 LEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGL 646

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK-PTHAVWGALLGACV 596
            +F  M   ++    ++HY C+ D+LGR GR+ EAY+ ++ +  +  T  +WG+LLGAC 
Sbjct: 647 RIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACR 706

Query: 597 IHGNVELGEVAAKWLFELEPEN--PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP 654
           IHG  ELG+V A  L E+E  +   G +VLLS +Y+A   W + + VR  M +KGL K  
Sbjct: 707 IHGEFELGKVVANKLLEMEKGSXLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEA 766

Query: 655 AHSLIEV 661
             S +EV
Sbjct: 767 GCSWVEV 773



 Score =  252 bits (643), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 182/644 (28%), Positives = 303/644 (47%), Gaps = 54/644 (8%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           GH      LFD +   ++ L+NT++  +  N    D+L  +  M        D+YT+   
Sbjct: 51  GHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSST 110

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMY-------------MNFGEVKA 164
           +KAC      KLG ALH  VL + F     V N L+ MY              +F     
Sbjct: 111 LKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDL 170

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
            R+VFD M + +VV+WNT+IS Y K     EA  +F  M++ G+ P   S V+V PA   
Sbjct: 171 VRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWR 230

Query: 225 LKEIEMGRMIHELVA--GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
           + + +   +++ LV   G     +    ++ + MY + G V+ AR +FD   ER+   W 
Sbjct: 231 MNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWN 290

Query: 283 SMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
           +MI GY  N     A+ LF Q+M+ E    + +T  S L+A S L +L  GR LHA+ +K
Sbjct: 291 TMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILK 350

Query: 342 QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVEL 401
            +   +V++  A+I MY++C  +  SF+VF+   ++  V WN +++  V NGL  + + L
Sbjct: 351 SSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLML 410

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
             +M  +    +  TL +LL   + L   +     H YLIR+G +    +   LID+Y+K
Sbjct: 411 VFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHG-IQFEGMDGYLIDMYAK 469

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
            G + +A ++F +    D+D   W+ +IAGY  +G  E   ++F++M++  V+PN VT  
Sbjct: 470 SGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLA 529

Query: 522 SALHACSHGGLLDEGLDLFNF------------------MLENHQTCSRADH-------- 555
           S L AC+  G +  G  +  F                  M       + A++        
Sbjct: 530 SILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEK 589

Query: 556 ----YTCIVDLLGRAGRLDEAYDLIRTM---PLKPTHAVWGALLGACVIHGNVELGEVAA 608
               YT ++   G+ G  + A  L   M    +KP    + A+L AC   G V+ G    
Sbjct: 590 NSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIF 649

Query: 609 KWL---FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
           + +   ++++P +  +Y  ++ +   V R  +A      + E+G
Sbjct: 650 QSMEREYKIQPSSE-HYCCVADMLGRVGRVXEAYEFVKGLGEEG 692



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 127/473 (26%), Positives = 232/473 (49%), Gaps = 12/473 (2%)

Query: 31  GTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           G+  +  F + S  +F +         G V   R +FD   ER++ ++NT++  Y QN  
Sbjct: 248 GSDYVDDFFVVSSAIFMYAE------LGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNC 301

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             +++ +F+ ++   ++  D+ T+   + A + L W  LG  LH  +L +   +   + N
Sbjct: 302 PIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILN 361

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            +I MY   G +  + KVF  M E  VV+WNT++S + +N    E L++   M K G   
Sbjct: 362 AIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMV 421

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA-LVDMYVKCGSVNEARLV 269
           D  ++ ++L     L+  E+G+  H  +   R G      +  L+DMY K G +  A+ +
Sbjct: 422 DSVTLTALLSLASNLRSQEIGKQAHAYLI--RHGIQFEGMDGYLIDMYAKSGLITTAQQL 479

Query: 270 FDRMS--ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           F++ S  +RD  TW +MI GY  NG       +F+ M  + VRPN++T+ S+L AC+ + 
Sbjct: 480 FEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMG 539

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            +  G+ +H + I+  L   V V TAL+DMY+K   +  +  VFA T +K +V +  ++ 
Sbjct: 540 TIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMIL 599

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFL 446
               +G+  +A+ LF  ML   ++P+  T  ++L A +    + + + I   + R Y   
Sbjct: 600 SYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQ 659

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
              E    + D+  + G +  A++    +  +     +W  ++    +HG  E
Sbjct: 660 PSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFE 712


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  370 bits (951), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 206/597 (34%), Positives = 331/597 (55%), Gaps = 34/597 (5%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG-EYNPDNYTYPIVIKACTDL 124
           LFDEM ER++  + T+++ YA++    +++++F+ + R G E NP  + +  ++K    +
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNP--FVFTTILKLLVSM 152

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
              +LG  +H  +   G + + FVG  LI  Y   G V  AR+VFD +    +VSW  ++
Sbjct: 153 DCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMV 212

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           + + +N   KEAL +F  M   G +P+  +  SV  AC  L+  ++G+ +H      R  
Sbjct: 213 TCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYE 272

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            ++    AL+D+Y K G +++AR  F+ + ++DV+ W+ MI  YA +   + A+ +F  M
Sbjct: 273 LDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQM 332

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
           +   V PN  T  S+L AC+++  L  G  +H   IK  L  +V V  AL+D+YAKC  +
Sbjct: 333 RQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRM 392

Query: 365 KLSFQVFARTSKKKTV-PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           + S  +FA +  +  V PWN ++ G V  G   KA+ LF  ML   V+  + T +S L A
Sbjct: 393 ENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRA 452

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
            A LA L+  + IH   ++  F   + V+  LID+Y+KCGS++ A  +F  +  +D+  V
Sbjct: 453 CASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDE--V 510

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ +I+GY MHG                             AC++ GLLD+G   F  M
Sbjct: 511 SWNAMISGYSMHGL----------------------------ACANAGLLDQGQAYFTSM 542

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
           +++H      +HYTC+V LLGR G LD+A  LI  +P +P+  VW ALLGACVIH ++EL
Sbjct: 543 IQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIEL 602

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           G ++A+ + E+EP++   +VLLS +Y+  +RW +  +VR  M  KG++K P  S IE
Sbjct: 603 GRISAQHVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIE 659



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 132/453 (29%), Positives = 228/453 (50%), Gaps = 33/453 (7%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++L+ AY   G V   R +FD +  +    +  ++  +A+N    ++LK+F  M  +G +
Sbjct: 178 TALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVG-F 236

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            P+N+T+  V KAC  L    +G ++HG  L + +++D +VG  L+ +Y   G++  AR 
Sbjct: 237 KPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARX 296

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
            F+ + +  V+ W+ +I+ Y ++  +KEA+ +F  M ++ V P+  +  SVL AC  ++ 
Sbjct: 297 AFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEG 356

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER-DVVTWTSMIN 286
           + +G  IH  V    L  ++   NAL+D+Y KCG +  +  +F     R DV  W ++I 
Sbjct: 357 LNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIV 416

Query: 287 GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346
           G+   GD   AL LF  M    V+   +T  S L AC+SL  L+ G  +H+ T+K   + 
Sbjct: 417 GHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDK 476

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
           +++V  ALIDMYAKC  +K +  VF   +K+  V WNA+++G   +GLA     L  Q  
Sbjct: 477 DIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLACANAGLLDQ-- 534

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
                   A   S++                     +G    +E  T ++ +  + G L+
Sbjct: 535 ------GQAYFTSMIQ-------------------DHGIEPCIEHYTCMVWLLGRGGHLD 569

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            A K+  EIP +   ++VW  ++    +H   E
Sbjct: 570 KAVKLIDEIPFQ-PSVMVWRALLGACVIHNDIE 601


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 201/535 (37%), Positives = 310/535 (57%), Gaps = 3/535 (0%)

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           + G  LH  ++  G+   TF+ N L+ MY   GE+  A K+FD M + ++VSW  +ISG 
Sbjct: 22  RRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGL 81

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            +N+   EA+  F  M   G  P   +  S + AC  L  IEMG+ +H L     +G  +
Sbjct: 82  SQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSEL 141

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
              + L DMY KCG++ +A  VF+ M  +D V+WT+MI+GY+  G+   AL  F+ M  E
Sbjct: 142 FVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDE 201

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
            V  +   + S L AC +L   K GRS+H+  +K   E ++ V  AL DMY+K   ++ +
Sbjct: 202 EVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESA 261

Query: 368 FQVFARTSK-KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
             VF   S+ +  V +  ++ G V      K + +F ++  + +EPN+ T +SL+ A A 
Sbjct: 262 SNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACAN 321

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
            A L+Q   +H  +++  F     VS+ L+D+Y KCG LE A + F EI   D   + W+
Sbjct: 322 QAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEI--GDPTEIAWN 379

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            +++ +G HG G+ A+ +F+ MV  GV+PN +TF S L  CSH GL++EGLD F  M + 
Sbjct: 380 SLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKT 439

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
           +      +HY+C++DLLGRAGRL EA + I  MP +P    W + LGAC IHG+ E+G++
Sbjct: 440 YGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKL 499

Query: 607 AAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           AA+ L +LEP+N G  VLLS +Y+  R+W+D  +VR  M +  ++K P +S ++V
Sbjct: 500 AAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDV 554



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 153/496 (30%), Positives = 251/496 (50%), Gaps = 10/496 (2%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG--PLFTHLRSSLVRAY---GHVSNVRI 65
           + T+ +  ++Q YA TK +   KQLHA +I +G  P  T L + LV  Y   G + +   
Sbjct: 3   RDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPC-TFLTNHLVNMYSKCGELDHALK 61

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LFD M +R+   +  ++   +QN    ++++ F GM   GE  P  + +   I+AC  L 
Sbjct: 62  LFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLG 120

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             ++G  +H   L  G   + FVG+ L  MY   G +  A KVF+ M     VSW  +I 
Sbjct: 121 SIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMID 180

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY K    +EAL+ F  M+   V  D   + S L ACG LK  + GR +H  V       
Sbjct: 181 GYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFES 240

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSE-RDVVTWTSMINGYALNGDVRNALGLFQLM 304
           +I   NAL DMY K G +  A  VF   SE R+VV++T +I+GY     +   L +F  +
Sbjct: 241 DIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL 300

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
           + +G+ PN  T  SL+ AC++   L++G  LHA  +K N + +  V + L+DMY KC L+
Sbjct: 301 RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLL 360

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
           + + Q F        + WN++++    +GL + A+++F +M+   V+PN  T  SLL   
Sbjct: 361 EQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGC 420

Query: 425 AILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
           +    +++ ++    + + YG +   E  + +ID+  + G L+ A +  + +P  + +  
Sbjct: 421 SHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPF-EPNAF 479

Query: 484 VWSVIIAGYGMHGHGE 499
            W   +    +HG  E
Sbjct: 480 GWCSFLGACRIHGDKE 495


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 220/605 (36%), Positives = 334/605 (55%), Gaps = 60/605 (9%)

Query: 107 YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR 166
           Y P++  +  ++ +C      +    +H R+L+T F M+ F+ N LI +Y     +  AR
Sbjct: 11  YLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDAR 70

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD-CA------------ 213
           K+FD M + +  +WN+LIS   K+ +  EA  +F  M     EPD C+            
Sbjct: 71  KLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSM----PEPDQCSWNSMVSGFAQHD 126

Query: 214 ----------------------SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
                                 S  S L AC  L ++ MG  +H LV+  R   ++   +
Sbjct: 127 RFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGS 186

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           AL+DMY KCGSV  A  VF  M ER++VTW S+I  Y  NG    AL +F  M   G+ P
Sbjct: 187 ALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEP 246

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN-LECEVIVETALIDMYAKCNLVKLSFQV 370
           + +T+ S++SAC+SL  LK G  +HA  +K N    ++++  AL+DMYAKC+ V  + +V
Sbjct: 247 DEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRV 306

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKA-VELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           F R S +  V   ++++     G AR A V+  R M  ++ + N  + N+L+  Y    +
Sbjct: 307 FDRMSIRNVVSETSMVS-----GYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGE 361

Query: 430 LQQAMNIHCYLIR-------YGFLSVVE----VSTGLIDIYSKCGSLESAHKIFSEIPIK 478
            ++A+ +   L R       Y F ++++    V   LID+Y KCGS+E   ++F +  +K
Sbjct: 362 NEEALRLFRLLKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEK--MK 419

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
           ++D V W+ II GY  +G+G  A+ +F++M+  G +P+ VT    L ACSH GL++EG  
Sbjct: 420 ERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRH 479

Query: 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
            F F +E H      DHYTC+VDLLGRAG L+EA +LI  MP+ P   VWG+LL AC +H
Sbjct: 480 YF-FSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVH 538

Query: 599 GNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSL 658
           GN+E+G+ AA+ L E++P N G YVLLS +Y+ + RW D   VR +M ++G+ K P  S 
Sbjct: 539 GNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSW 598

Query: 659 IEVRN 663
           IEV +
Sbjct: 599 IEVES 603



 Score =  245 bits (625), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 165/534 (30%), Positives = 278/534 (52%), Gaps = 46/534 (8%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFII-TSGPLFTHLRSSLVRAYGH---VSNVR 64
           LP ++    KL+     ++S  GT+ +HA I+ T   +   +++ L+  YG    + + R
Sbjct: 12  LPNSSPFA-KLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDAR 70

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNG---------------------------ASHD---- 93
            LFD M +R++F +N+++ +  ++G                           A HD    
Sbjct: 71  KLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEE 130

Query: 94  SLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLI 153
           SL+ F+ M R  ++  + Y++   + AC  L    +G  +H  V  + +  D ++G+ LI
Sbjct: 131 SLEYFVKMHR-EDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALI 189

Query: 154 AMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCA 213
            MY   G V  A +VF  M E ++V+WN+LI+ Y +N  A EAL VF  M+ SG+EPD  
Sbjct: 190 DMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEV 249

Query: 214 SVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR 272
           ++ SV+ AC  L  ++ G  IH  +V   +   ++   NALVDMY KC  VNEAR VFDR
Sbjct: 250 TLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDR 309

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLM-QFEGVRPNSLTIGSLLSACSS----LY 327
           MS R+VV+ TSM++GYA    V+ A  +F  M Q   V  N+L  G   +  +     L+
Sbjct: 310 MSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLF 369

Query: 328 YLKRGRSLHA--WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
            L +  S+    +T    L+ ++ V  +LIDMY KC  ++   +VF +  ++  V WNAI
Sbjct: 370 RLLKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAI 429

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           + G   NG   +A+++FR+MLV   +P+  T+  +L A +    +++  +    +  +G 
Sbjct: 430 IVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGL 489

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           + + +  T ++D+  + G L  A  +   +P+ + D VVW  ++A   +HG+ E
Sbjct: 490 IPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPV-NPDAVVWGSLLAACKVHGNIE 542


>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 796

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 216/654 (33%), Positives = 347/654 (53%), Gaps = 24/654 (3%)

Query: 28  SIAGTKQLHAFIITSGP---LFTHLRSSLVRAY-----GHVSNVRILFDEMSERSSFLYN 79
           S+     +H  I  + P   LF  LR++L+ AY     G     R L DEM  R++  +N
Sbjct: 25  SLPQAAAVHGHIARAHPSPSLF--LRNTLLAAYCRLGAGDTHQARRLLDEMPRRNAVSFN 82

Query: 80  TVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLI 139
            ++  Y++ G + +SL+ FL   R  E   D +TY   + AC+     K G  +H   ++
Sbjct: 83  LLIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAACSRAGRLKEGKVVHALAVL 142

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
            G     FV N L++MY   G++  AR+VFD   E   VSWN+L+SGY +    +E L V
Sbjct: 143 EGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLVSGYLRVGAHEEMLRV 202

Query: 200 FDWMLKSGVEPDCASVVSVLPAC----GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           F  M +  +  +  ++ SV+  C    G ++ I     +H  V    L  ++   +A+VD
Sbjct: 203 FALMRRCAMGLNSFALGSVIKCCSGGDGSVRGI--AEAVHGCVVKAGLDTDLFLASAMVD 260

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD------VRNALGLFQLMQFEGV 309
           MY K G+++EA  +F  + + +VV + +MI G   +        VR AL L+  +Q  G+
Sbjct: 261 MYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQSRGM 320

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
            P   T  S++ AC+    ++ G+ +H   +K   + +  + +ALID+Y     ++  F+
Sbjct: 321 EPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYFNSACMEDGFR 380

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
            F    K+  V W A+++GCV N L  +A+ LF ++L   ++P+  T++S++ A A LA 
Sbjct: 381 CFRSVPKQDVVTWTAMISGCVQNELFERALALFHELLGVGLKPDPFTISSVMNACASLAV 440

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           ++    + C+  + GF     +    I +Y++ G++E+A + F E+  +  D+V WS II
Sbjct: 441 VRTGEQMQCFATKSGFDRFTAMGNSCIHMYARSGNVEAAIQRFQEM--ESHDVVSWSAII 498

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           + +  HG    A+  F EMV + V PNE+TF   L ACSHGGL+DEGL  +  M   +  
Sbjct: 499 SSHAQHGCARQALQFFNEMVGAKVVPNEITFLGVLTACSHGGLVDEGLRYYEIMKMEYGL 558

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
           C    H TC+VDLLGRAGRL +A   IR         VW +LLG+C IH ++E G++ A 
Sbjct: 559 CPTVKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVVWQSLLGSCRIHRDMERGQLVAD 618

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            + EL+P + G YV L  +Y           +RD+M E+G++K P  S IE+R+
Sbjct: 619 RIMELQPASSGCYVNLYNMYLDAGELSLGSKIRDLMKERGVKKEPGLSWIELRS 672


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 198/496 (39%), Positives = 302/496 (60%), Gaps = 11/496 (2%)

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
           +V SWN++I+   ++  + EAL  F  M K  ++P+ ++    + +C  L ++  GR  H
Sbjct: 116 NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 175

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
           +         ++   +ALVDMY KCG + +AR +FD +S R++V+WTSMI GY  N D  
Sbjct: 176 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 235

Query: 296 NALGLFQ--LMQFEG------VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
            AL LF+  L++  G      V  + + + S+LSACS +        +H + IK+  E +
Sbjct: 236 RALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGD 295

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           + VE  L+D YAKC  + +S +VF   +++  + WN+I+A    NG++ +++E+F +M+ 
Sbjct: 296 LGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVK 355

Query: 408 E-VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
           +  +  N  TL+++L A A     +    IH  +I+ G  S V V T +ID+Y KCG +E
Sbjct: 356 DGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVE 415

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
            A K F  +  ++K++  WS ++AGYGMHGH + A+ +F EM  +GV+PN +TF S L A
Sbjct: 416 MARKAFDRM--REKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAA 473

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           CSH GLL+EG   F  M          +HY C+VDLLGRAG L EA+DLI+ M L+P   
Sbjct: 474 CSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFV 533

Query: 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646
           VWGALLGAC +H NV+LGE++A+ LFEL+P+N G YVLLS +Y+   RW+D E +R +M 
Sbjct: 534 VWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMK 593

Query: 647 EKGLRKAPAHSLIEVR 662
             GL K P  SL++++
Sbjct: 594 NSGLVKPPGFSLVDIK 609



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 150/459 (32%), Positives = 253/459 (55%), Gaps = 23/459 (5%)

Query: 53  LVRAYGHVSNVRILFDEMSERSS-FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           L R Y +  N+  LF++  ++++ F +N+V+   A++G S ++L+ F  M +L    P+ 
Sbjct: 94  LRRRYSNNPNLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLS-LKPNR 152

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T+P  IK+C+ L     G   H + LI GF+ D FV + L+ MY   GE++ AR +FD 
Sbjct: 153 STFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDE 212

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWML--KSGVEPD---CA---SVVSVLPACG 223
           +   ++VSW ++I+GY +N  A  AL++F   L  +SG E D   C    ++VSVL AC 
Sbjct: 213 ISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACS 272

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
            + E  +   +H  +       ++   N L+D Y KCG +  +R VFD M+ERDV++W S
Sbjct: 273 RVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNS 332

Query: 284 MINGYALNGDVRNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           +I  YA NG    ++ +F  M  +G +  N++T+ ++L AC+     + G+ +H   IK 
Sbjct: 333 IIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKM 392

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
            LE  V V T++IDMY KC  V+++ + F R  +K    W+A++AG   +G A++A+E+F
Sbjct: 393 GLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVF 452

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQ------AMNIHCYLIRYGFLSVVEVSTGLI 456
            +M +  V+PN  T  S+L A +    L++      AM+ H + +  G    VE    ++
Sbjct: 453 YEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMS-HEFDVEPG----VEHYGCMV 507

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           D+  + G L+ A  +   + ++  D VVW  ++    MH
Sbjct: 508 DLLGRAGYLKEAFDLIKGMKLR-PDFVVWGALLGACRMH 545



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 160/293 (54%), Gaps = 20/293 (6%)

Query: 25  ATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNT 80
           + KSI  T+ +H F+I  G      + ++L+ AY   G +   R +FD M+ER    +N+
Sbjct: 275 SEKSI--TEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNS 332

Query: 81  VMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT 140
           ++ +YAQNG S +S+++F  M++ GE N +  T   V+ AC     ++LG  +H +V+  
Sbjct: 333 IIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKM 392

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           G + + FVG  +I MY   G+V+ ARK FD M E +V SW+ +++GY  + +AKEAL VF
Sbjct: 393 GLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVF 452

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMG-----RMIHELVAGGRLGKNIAAWNALVD 255
             M  +GV+P+  + VSVL AC +   +E G      M HE      +   +  +  +VD
Sbjct: 453 YEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEF----DVEPGVEHYGCMVD 508

Query: 256 MYVKCGSVNEARLVFDRMSER-DVVTWTSMINGYALNGDVR----NALGLFQL 303
           +  + G + EA  +   M  R D V W +++    ++ +V     +A  LF+L
Sbjct: 509 LLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFEL 561


>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 200/546 (36%), Positives = 320/546 (58%), Gaps = 12/546 (2%)

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           KL    H R+L  G   ++F+   LI  Y        +R VFD++   +V  WN+LI+G 
Sbjct: 40  KLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGC 99

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKN 246
            KN    EA  +F+ M  S V PD  ++ ++      L  +  G+ IH + +  G +   
Sbjct: 100 VKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFVSDT 159

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV---RNALGLFQL 303
           + A N+++ MY KCG+ +E+R VFD M+ R+  +W  +I GYA++G+           + 
Sbjct: 160 VVA-NSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQ 218

Query: 304 MQFEGVRPNSLTIGSLLSACS-SLYYLKRGRSLHAWTIKQNL----ECEVIVETALIDMY 358
           MQ + VRP++ TI SLL  C   +     GR LH + +K  L    + +V +   LIDMY
Sbjct: 219 MQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMY 278

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM-LVEVVEPNDATL 417
           ++ N V +  +VF R   +    W A++ G V NG + +A+ LFR M +++ VEPN  +L
Sbjct: 279 SRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVSL 338

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            S+LPA +  + L     IH + +R    + V +   LID+YSKCGSL+SA ++F +  +
Sbjct: 339 VSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSL 398

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
             KD + WS +I+GYG+HG G+ A+ L+ +M+Q+G++P+ +T    L AC   GL++EGL
Sbjct: 399 C-KDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACGRSGLVNEGL 457

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
           ++++ ++ ++      +   CIVD+LGRAG+LD A D I+ +P++P  +VWGAL+   +I
Sbjct: 458 NIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDFIKAIPVEPGPSVWGALVSCSII 517

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           HG++E+ E+A ++L +LEP+NP NYV +S LY++ RRW     VR +M +K LRK P  S
Sbjct: 518 HGDLEMQELAYRFLIQLEPKNPSNYVSISNLYASSRRWDAVAEVRRMMKDKRLRKVPGCS 577

Query: 658 LIEVRN 663
            I + N
Sbjct: 578 WISINN 583



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 162/521 (31%), Positives = 274/521 (52%), Gaps = 22/521 (4%)

Query: 27  KSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVM 82
           KS+  T+Q H+ I++ G    + L + L+ AY    H  + R++FD +  ++ FL+N+++
Sbjct: 37  KSLKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLI 96

Query: 83  KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
               +N   +++ ++F  M    +  PD++T   + K  ++L     G ++HG+ + TGF
Sbjct: 97  NGCVKNRLYNEAFQLFNQMCS-SDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGF 155

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA---YAKEALVV 199
             DT V N +++MY   G    +RKVFD M   +  SWN LI+GY  +    + +E    
Sbjct: 156 VSDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEF 215

Query: 200 FDWMLKSGVEPDCASVVSVLPAC-GYLKEIEMGRMIH------ELVAGGRLGKNIAAWNA 252
              M    V PD  ++ S+LP C G + + + GR +H      ELV G  L  ++     
Sbjct: 216 VKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLG--LDSDVHLGCC 273

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ-FEGVRP 311
           L+DMY +   V   R VFDRM  R+V +WT+MINGY  NGD   AL LF+ MQ  +GV P
Sbjct: 274 LIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEP 333

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           N +++ S+L ACSS   L  GR +H + +++ L  EV +  ALIDMY+KC  +  + +VF
Sbjct: 334 NRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNNEVSLCNALIDMYSKCGSLDSARRVF 393

Query: 372 ARTS-KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
              S  K  + W+++++G   +G  ++A+ L+ +ML   + P+  T   +L A      +
Sbjct: 394 EDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACGRSGLV 453

Query: 431 QQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
            + +NI+  +I  YG    +E+   ++D+  + G L+ A      IP+ +    VW  ++
Sbjct: 454 NEGLNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDFIKAIPV-EPGPSVWGALV 512

Query: 490 AGYGMHGHGETAVSLFKEMVQ-SGVQPNEVTFTSALHACSH 529
           +   +HG  E     ++ ++Q     P+     S L+A S 
Sbjct: 513 SCSIIHGDLEMQELAYRFLIQLEPKNPSNYVSISNLYASSR 553



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 177/383 (46%), Gaps = 12/383 (3%)

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           K +++ R  H  +    L +N      L+  Y  C     +RLVFD +  ++V  W S+I
Sbjct: 37  KSLKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLI 96

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           NG   N     A  LF  M    V P+  T+ +L    S L  L  G+S+H  +I+    
Sbjct: 97  NGCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFV 156

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG---LARKAVELF 402
            + +V  +++ MY KC     S +VF   + + +  WN ++AG   +G      +  E  
Sbjct: 157 SDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFV 216

Query: 403 RQMLVEVVEPNDATLNSLLP-AYAILADLQQAMNIHCYLIR----YGFLSVVEVSTGLID 457
           +QM ++ V P+  T++SLLP     +        +HCY+++     G  S V +   LID
Sbjct: 217 KQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLID 276

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM-VQSGVQPN 516
           +YS+   +    ++F    +K +++  W+ +I GY  +G  + A+SLF++M V  GV+PN
Sbjct: 277 MYSRSNKVVVGRRVFDR--MKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPN 334

Query: 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
            V+  S L ACS    L  G  +  F +      +       ++D+  + G LD A  + 
Sbjct: 335 RVSLVSVLPACSSFSGLLSGRQIHGFAVRKELN-NEVSLCNALIDMYSKCGSLDSARRVF 393

Query: 577 RTMPLKPTHAVWGALLGACVIHG 599
               L      W +++    +HG
Sbjct: 394 EDDSLCKDAISWSSMISGYGLHG 416



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 133/281 (47%), Gaps = 10/281 (3%)

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           LK  R  H+  +   L     + T LI  YA C     S  VF     K    WN+++ G
Sbjct: 39  LKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLING 98

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
           CV N L  +A +LF QM    V P+D TL++L    + L  L    +IH   IR GF+S 
Sbjct: 99  CVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFVSD 158

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG---ETAVSLF 505
             V+  ++ +Y KCG+ + + K+F E+ I++     W+V+IAGY + G+    E      
Sbjct: 159 TVVANSIMSMYCKCGNFDESRKVFDEMTIRNSG--SWNVLIAGYAVSGNCNFREETWEFV 216

Query: 506 KEMVQSGVQPNEVTFTSALHACSHG-GLLDEGLDLFNFMLENHQTC---SRADHYTCIVD 561
           K+M    V+P+  T +S L  C    G  D G +L  ++++N       S      C++D
Sbjct: 217 KQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLID 276

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           +  R+ ++     +   M  +   + W A++   V +G+ +
Sbjct: 277 MYSRSNKVVVGRRVFDRMKCRNVFS-WTAMINGYVENGDSD 316


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 201/535 (37%), Positives = 309/535 (57%), Gaps = 3/535 (0%)

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           + G  LH  ++  G+   TF+ N L+ MY   GE+  A K+FD M + ++VSW  +ISG 
Sbjct: 22  RRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGL 81

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            +N+   EA+  F  M   G  P   +  S + AC  L  IEMG+ +H L     +G  +
Sbjct: 82  SQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSEL 141

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
              + L DMY KCG++ +A  VF+ M  +D V+WT+MI+GY+  G+   AL  F+ M  E
Sbjct: 142 FVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDE 201

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
            V  +   + S L AC +L   K GRS+H+  +K   E ++ V  AL DMY+K   ++ +
Sbjct: 202 EVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESA 261

Query: 368 FQVFARTSK-KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
             VF   S+ +  V +  ++ G V      K + +F ++  + +EPN+ T +SL+ A A 
Sbjct: 262 SNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACAN 321

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
            A L+Q   +H  +++  F     VS+ L+D+Y KCG LE A + F EI   D   + W+
Sbjct: 322 QAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEI--GDPTEIAWN 379

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            +++ +G HG G+ A+  F+ MV  GV+PN +TF S L  CSH GL++EGLD F  M + 
Sbjct: 380 SLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKT 439

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
           +      +HY+C++DLLGRAGRL EA + I  MP +P    W + LGAC IHG+ E+G++
Sbjct: 440 YGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKL 499

Query: 607 AAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           AA+ L +LEP+N G  VLLS +Y+  R+W+D  +VR  M +  ++K P +S ++V
Sbjct: 500 AAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDV 554



 Score =  240 bits (612), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 153/496 (30%), Positives = 250/496 (50%), Gaps = 10/496 (2%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG--PLFTHLRSSLVRAY---GHVSNVRI 65
           + T+ +  ++Q YA TK +   KQLHA +I +G  P  T L + LV  Y   G + +   
Sbjct: 3   RDTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPC-TFLTNHLVNMYSKCGELDHALK 61

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LFD M +R+   +  ++   +QN    ++++ F GM   GE  P  + +   I+AC  L 
Sbjct: 62  LFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLG 120

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             ++G  +H   L  G   + FVG+ L  MY   G +  A KVF+ M     VSW  +I 
Sbjct: 121 SIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMID 180

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY K    +EAL+ F  M+   V  D   + S L ACG LK  + GR +H  V       
Sbjct: 181 GYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFES 240

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSE-RDVVTWTSMINGYALNGDVRNALGLFQLM 304
           +I   NAL DMY K G +  A  VF   SE R+VV++T +I+GY     +   L +F  +
Sbjct: 241 DIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL 300

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
           + +G+ PN  T  SL+ AC++   L++G  LHA  +K N + +  V + L+DMY KC L+
Sbjct: 301 RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLL 360

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
           + + Q F        + WN++++    +GL + A++ F +M+   V+PN  T  SLL   
Sbjct: 361 EHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGC 420

Query: 425 AILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
           +    +++ ++    + + YG +   E  + +ID+  + G L+ A +  + +P  + +  
Sbjct: 421 SHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPF-EPNAF 479

Query: 484 VWSVIIAGYGMHGHGE 499
            W   +    +HG  E
Sbjct: 480 GWCSFLGACRIHGDKE 495


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 219/661 (33%), Positives = 343/661 (51%), Gaps = 10/661 (1%)

Query: 9   LPK-TTHLVIKLVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY---GHVS 61
           LPK  ++   +L+Q+  A       + +HA ++  G    L T   + L+  Y   G ++
Sbjct: 42  LPKLDSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLA 101

Query: 62  NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC 121
             R LFD M ER+   + T+++ YA  G   ++  +F  + R G +  +++    ++K  
Sbjct: 102 AARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREG-HEVNHFVLTTILKVL 160

Query: 122 TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWN 181
             +    L   +H      G D + FVG+ LI  Y   G V  AR VFD +     V+W 
Sbjct: 161 VAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWT 220

Query: 182 TLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG 241
            ++S Y +N   ++AL  F  M  +G +P+   + SVL A   L    +G+ IH      
Sbjct: 221 AMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKT 280

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
                     AL+DMY KCG + +AR VF+ +   DV+ W+ +I+ YA +     A  +F
Sbjct: 281 LCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMF 340

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
             M    V PN  ++  +L AC+++ +L  G+ +H   IK   E E+ V  AL+D+YAKC
Sbjct: 341 LRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKC 400

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
             ++ S ++F        V WN I+ G   +G A  A+ +F++M    V     T +S+L
Sbjct: 401 RNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVL 460

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            A A  A ++  + IH  + +  F +   V   LID Y+KCG +  A K+F  I     D
Sbjct: 461 RACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESI--IQCD 518

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           +V W+ II+GY +HG    A+ LF  M +S  +PN+VTF + L  C   GL+++GL LFN
Sbjct: 519 VVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFN 578

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            M  +H+     DHYTCIV LLGRAGRL++A   I  +P  P+  VW ALL +CV+H NV
Sbjct: 579 SMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNV 638

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            LG+ +A+ + E+EP++   YVLLS +Y+A         +R  M   G++K    S +E+
Sbjct: 639 ALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEI 698

Query: 662 R 662
           +
Sbjct: 699 K 699


>gi|414887787|tpg|DAA63801.1| TPA: hypothetical protein ZEAMMB73_367984 [Zea mays]
          Length = 711

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 216/659 (32%), Positives = 353/659 (53%), Gaps = 24/659 (3%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSN------VRILFDE 69
           + L+ +  +  ++   ++LHA ++  G    T L + LVRAY  + +      VR+ FD 
Sbjct: 61  VALLLRLQSAPALTEVRRLHAALLVRGYHRSTVLAAQLVRAYARMRDGGLGHAVRV-FDG 119

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           M  R+SF +N V+K     G   ++L+ +  M+R G    D +TYP V+KAC       L
Sbjct: 120 MPTRNSFAWNAVIKGLVDAGRFSEALRWYWDMVRDGSVVADRFTYPPVLKACA-----AL 174

Query: 130 GIALHGRVLITGFDMD---------TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
           G    GR +    + D          FV   L+ M+   G +  AR +F++M    + SW
Sbjct: 175 GEVEQGRKVQENVETDIARGIAKGNVFVQCALVDMFAKCGCLGEARNMFESMGVRDLASW 234

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
             +I G  +     E + +   M   G  PD     +V+PACG +KE+  G  +H     
Sbjct: 235 TAMIGGAVRGGDWLEVMTLLKRMKSEGFRPDSMIFATVIPACGKVKELRTGMALHGYAVK 294

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
             +G +I   NALVDMY KC  ++ A  +F  +  +DV +W+++I G++ N     ++ L
Sbjct: 295 CGVGDDICVPNALVDMYCKCARLDMAASLFWSIDHKDVFSWSTIIAGHSQNRIYNVSVSL 354

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
           F  M   G++PNS TI S+L + S L  L+ G+ +H ++++  LE    + +ALID Y +
Sbjct: 355 FTEMVASGIKPNSTTIASILPSISELRLLRYGKEIHCFSLRNRLEHSEFLASALIDFYCR 414

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
              ++ +  VF    K   V  N+++ G V N  +  A+ L R +L E + P+  T+ S+
Sbjct: 415 QGYIRDAQIVFEFKPKNDLVVLNSMIRGYVVNKDSESALRLLRALLKEGLRPDHVTVVSV 474

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           LP     + L Q   +H Y IR+   S   V+  L D+Y KCG LE A+KIF  + + ++
Sbjct: 475 LPLCNQPSRLLQGKELHAYAIRHNISSCFSVTNALTDMYCKCGCLEIANKIF--LLMTER 532

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
           + V ++ +I+  G HGH + A  LF  M + GV P++VTF + L  CSHGGL+D+GL  +
Sbjct: 533 NTVTYNTLISSLGKHGHADQAFILFDLMKRDGVSPDKVTFVALLSCCSHGGLIDKGLCFY 592

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           + ML ++      +HY+CIVDL  R+G+LD+A+  I  +   P   V G LL AC  H  
Sbjct: 593 DSMLRDYNIPPDKEHYSCIVDLYSRSGKLDDAWSFIANLQEVPEIDVLGCLLSACRDHHR 652

Query: 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           +++ E+ A+ +FE  P +PG ++LLS +Y++   W +   +R +++E+ L+K   +SLI
Sbjct: 653 MDIAELVAERIFEQNPNDPGYHILLSNVYASAGMWSEVTRIRTMIEERSLKKRTGNSLI 711


>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 800

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 209/664 (31%), Positives = 368/664 (55%), Gaps = 9/664 (1%)

Query: 2   NGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHL-RSSLVRAYGHV 60
           N   +  +P +  +   +++  A   ++   +++H  II  G    H+  +SL+  YG +
Sbjct: 88  NKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEVHGRIIKYGLDVDHVVETSLLGMYGDL 147

Query: 61  ---SNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
              SN + +FD M+ R    +++++  Y  NG S + L+MF  +L   +   D+ T   +
Sbjct: 148 GCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMF-RLLVSQDVELDSVTMLSI 206

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
             AC +L + +L  ++HG ++    +    + + L+ MY    +  +A ++F  M+  S+
Sbjct: 207 AGACGELGFLRLAKSVHGCIIRQRIETRGPLNDALVLMYSRCDDFSSAERIFSNMFNRSI 266

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
            SW  +IS Y ++ + K+AL VF  ML+  V P+  ++++VL +C     +  G+ +H  
Sbjct: 267 ASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAVTIMAVLSSCAGFNLLREGKSVHCY 326

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                   + +   AL++ Y + G ++    V   + +R++++W  +I+ YA  G  + A
Sbjct: 327 AVKHIDLDDDSLGPALIEYYAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEA 386

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           LG+F  MQ +G  P+S ++ S +SAC+++  L  G  +H + IK+++  E  V+ +LIDM
Sbjct: 387 LGIFVQMQRQGQIPDSFSLSSSISACANVGLLWLGHQIHGYAIKRHILDE-FVQNSLIDM 445

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y+KC  V L++ +F R   K  V WN+++ G    G + +A+ LF QM +  ++ N+ T 
Sbjct: 446 YSKCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTF 505

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            + + A + +  L++   +H  LI YG    + + T LID+Y+KCG L  AH++F    +
Sbjct: 506 LTAIQACSHMGHLEKGKWLHHKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFD--SM 563

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            ++ +V WS +I G GMHG  + A+SLF EM+Q  ++PN++TF + L ACSH G ++EG 
Sbjct: 564 SERSVVSWSAMIGGCGMHGDIDAAISLFAEMIQREMKPNDITFMNILSACSHSGYVEEGK 623

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             FN M +N +     +H+ C+VDLL RAG LDEAY +I +MP     ++WGALL  C I
Sbjct: 624 FYFNSM-KNFEVEPNLEHFACMVDLLSRAGDLDEAYRIINSMPFPAEASIWGALLNGCRI 682

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           H  +++     + L ++  ++ G Y LLS +Y+    W  +  VR  M   GL+K P +S
Sbjct: 683 HQRMDMIRNIERDLLDMRTDDTGYYTLLSNIYAEEGNWDVSRKVRSAMKGIGLKKVPGYS 742

Query: 658 LIEV 661
            IE+
Sbjct: 743 TIEL 746



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 162/587 (27%), Positives = 309/587 (52%), Gaps = 16/587 (2%)

Query: 23  YAATKSIAGTKQLHAFIITSGPLFTHLRSS-LVRAY---GHVSNVRILFDEMSERSSFLY 78
           + +  S+     LH+ ++ +G       S+ L+ +Y   G + + +++F+      SF++
Sbjct: 8   FRSCTSLRPLTLLHSHLLVTGLHHDPQASTKLIESYSQIGCLQSSKLVFETFQNPDSFMW 67

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
             ++K +  +    +++ ++  M+   +    ++ +  V++AC       +G  +HGR++
Sbjct: 68  AVLIKCHVWSNFCGEAISLYNKMI-YKQIPISDFIFSSVLRACAGFGNLDVGEEVHGRII 126

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
             G D+D  V   L+ MY + G +  A+KVFD M    +VSW+++IS Y  N  + E L 
Sbjct: 127 KYGLDVDHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLE 186

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           +F  ++   VE D  +++S+  ACG L  + + + +H  +   R+       +ALV MY 
Sbjct: 187 MFRLLVSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDALVLMYS 246

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIG 317
           +C   + A  +F  M  R + +WT+MI+ Y  +   + AL +F ++++F+ V PN++TI 
Sbjct: 247 RCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFK-VAPNAVTIM 305

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           ++LS+C+    L+ G+S+H + +K     +  +  ALI+ YA+   +    +V     K+
Sbjct: 306 AVLSSCAGFNLLREGKSVHCYAVKHIDLDDDSLGPALIEYYAQFGKLSYCEKVLHTIGKR 365

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             + WN +++     GL ++A+ +F QM  +   P+  +L+S + A A +  L     IH
Sbjct: 366 NIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISACANVGLLWLGHQIH 425

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            Y I+   L    V   LID+YSKCG ++ A+ IF    I+ K +V W+ +I G+   G+
Sbjct: 426 GYAIKRHILDEF-VQNSLIDMYSKCGHVDLAYLIFDR--IQSKSVVAWNSMICGFSQIGN 482

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY- 556
              A+ LF +M  + +  NEVTF +A+ ACSH G L++G  L + ++       + D + 
Sbjct: 483 SLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHKLIAYG---VKKDLFI 539

Query: 557 -TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
            T ++D+  + G L  A+ +  +M  +     W A++G C +HG+++
Sbjct: 540 DTALIDMYAKCGDLRIAHRVFDSMSERSV-VSWSAMIGGCGMHGDID 585



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/481 (25%), Positives = 246/481 (51%), Gaps = 12/481 (2%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           Y  + ++CT L  R L + LH  +L+TG   D      LI  Y   G +++++ VF+   
Sbjct: 4   YMPLFRSCTSL--RPLTL-LHSHLLVTGLHHDPQASTKLIESYSQIGCLQSSKLVFETFQ 60

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
                 W  LI  +  + +  EA+ +++ M+   +        SVL AC     +++G  
Sbjct: 61  NPDSFMWAVLIKCHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVGEE 120

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           +H  +    L  +     +L+ MY   G ++ A+ VFD M+ RD+V+W+S+I+ Y  NG+
Sbjct: 121 VHGRIIKYGLDVDHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGE 180

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
               L +F+L+  + V  +S+T+ S+  AC  L +L+  +S+H   I+Q +E    +  A
Sbjct: 181 SSEGLEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQRIETRGPLNDA 240

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           L+ MY++C+    + ++F+    +    W A+++    +   ++A+++F +ML   V PN
Sbjct: 241 LVLMYSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPN 300

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
             T+ ++L + A    L++  ++HCY +++  L    +   LI+ Y++ G L    K+  
Sbjct: 301 AVTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDSLGPALIEYYAQFGKLSYCEKVLH 360

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
              I  ++I+ W+++I+ Y   G  + A+ +F +M + G  P+  + +S++ AC++ GLL
Sbjct: 361 --TIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSSISACANVGLL 418

Query: 534 DEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
             G  +  + ++ H      D +    ++D+  + G +D AY +   +  K   A W ++
Sbjct: 419 WLGHQIHGYAIKRHIL----DEFVQNSLIDMYSKCGHVDLAYLIFDRIQSKSVVA-WNSM 473

Query: 592 L 592
           +
Sbjct: 474 I 474


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 201/608 (33%), Positives = 321/608 (52%), Gaps = 12/608 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +++   LFD M  ++   + +VM  Y +NG    +L MF  M+  G   P+++     
Sbjct: 62  GRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESG-VAPNDFACNAA 120

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + AC DL   + G  +H   +  GF  D ++G+CLI MY   G + AA++VFD M    V
Sbjct: 121 LVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDV 180

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V + +LIS + +N   + A      MLK G++P+  ++ ++L AC  +    +G+ IH  
Sbjct: 181 VGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHGY 236

Query: 238 VAG--GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
           +    G   +++ +  AL+D Y + G    A+ VFD +  ++VV+W SM+  Y  +G + 
Sbjct: 237 LIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLE 296

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            AL +F  M  EGV PN   +  +L AC S+     GR LH   IK +L  ++ V  AL+
Sbjct: 297 EALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GRQLHCSAIKHDLITDIRVSNALL 353

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
            MY +  LV+    +  +      V W   ++    NG   KA+ L  QM  E   PN  
Sbjct: 354 SMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGY 413

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
             +S+L + A +A L Q M  HC  ++ G  S +     LI++YSKCG + SA   F   
Sbjct: 414 AFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFD-- 471

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
            +   D+  W+ +I G+  HG    A+ +F +M  +G++P++ TF   L  C+H G+++E
Sbjct: 472 VMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEE 531

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           G   F  M++ +       HY C++D+LGR GR DEA  +I  MP +P   +W  LL +C
Sbjct: 532 GELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASC 591

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
            +H N+++G++AA  L EL   +  +YVL+S +Y+    W+DA  VR  MDE G++K   
Sbjct: 592 KLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAG 651

Query: 656 HSLIEVRN 663
            S IE+ N
Sbjct: 652 CSWIEINN 659



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 178/377 (47%), Gaps = 18/377 (4%)

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
           VK G + +A  +FDRM  ++VV WTS+++GY  NG    AL +F  M   GV PN     
Sbjct: 59  VKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACN 118

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           + L AC+ L  L+ G  +H+  ++     +  + + LI+MY++C  +  + +VF R    
Sbjct: 119 AALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSP 178

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V + ++++    NG    A E   QML + ++PN+ T+ ++L A   +   Q    IH
Sbjct: 179 DVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQ----IH 234

Query: 438 CYLIRYGFLSVVEV--STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
            YLI+   L    V  ST LID YS+ G  + A  +F  +    K++V W  ++  Y   
Sbjct: 235 GYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHC--KNVVSWCSMMQLYIRD 292

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
           G  E A+ +F +M+  GV PNE   +  L AC   GL   G  L    ++ H   +    
Sbjct: 293 GRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GRQLHCSAIK-HDLITDIRV 348

Query: 556 YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
              ++ + GR G ++E   ++  +   P    W   + A   +G    GE A   L ++ 
Sbjct: 349 SNALLSMYGRTGLVEELEAMLNKIE-NPDLVSWTTAISANFQNG---FGEKAIALLCQMH 404

Query: 616 PE--NPGNYVLLSKLYS 630
            E   P  Y   S L S
Sbjct: 405 SEGFTPNGYAFSSVLSS 421



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 134/289 (46%), Gaps = 36/289 (12%)

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
           +V++E   ++   K   +  +  +F R  +K  V W ++++G   NG    A+ +F  M+
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
              V PND   N+ L A A L  L+    +H   +R GF     + + LI++YS+CGSL 
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLP 166

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
           +A ++F    +   D+V ++ +I+ +  +G  E A     +M++ G++PNE T T+ L A
Sbjct: 167 AAKEVFDR--MDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTA 224

Query: 527 CS-------HGGLLDE-GLD---------LFNFMLENHQ-----------TCSRADHYTC 558
           C        HG L+ + GL          L +F   N +            C     +  
Sbjct: 225 CPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCS 284

Query: 559 IVDLLGRAGRLDEAYDLIRTM---PLKPTHAVWGALLGACVIHGNVELG 604
           ++ L  R GRL+EA  +   M    + P       +LGAC   G++ LG
Sbjct: 285 MMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGAC---GSIGLG 330


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  369 bits (948), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 188/536 (35%), Positives = 320/536 (59%), Gaps = 4/536 (0%)

Query: 133 LHGRVLITG-FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
           +H  +L TG F  D      LIA Y     +  AR VF+ M + S+ +WN++I  Y +  
Sbjct: 4   IHALILTTGLFFNDANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRTN 63

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
           Y  E L ++  M+  G++PD ++    L AC  L +++MG +I         G ++   +
Sbjct: 64  YPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVS 123

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           +++++Y K G +++A++VFD+M +RDVV+WT+MI G+A +G   +A+ +++ MQ E    
Sbjct: 124 SVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEG 183

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           + + +  L+ AC+SL   K G S+H   +++ +  + +++T+LIDMYAK   ++L+ +VF
Sbjct: 184 DGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVF 243

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
                K  + W A+++G   NG A K +    +M     +P+  +L S L A A + +L+
Sbjct: 244 EGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLK 303

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
              ++H ++++  +L  V   T LID+Y+KCG+L  A  +F +  I+ +D+++W+ +I+ 
Sbjct: 304 VGKSLHGHIVKRLYLDKVS-GTALIDMYAKCGALTFARALFDQ--IEPRDLILWNAMISS 360

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           YG+HG G  A+SLF +M ++ + P+  TF S L ACSH GL++EG   F+ +++  +   
Sbjct: 361 YGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQP 420

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
              HY C+VDLL RAG+++EAY LI +M +KP  A+W ALL  C+ H N+ +GE+ AK +
Sbjct: 421 SEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSGCLNHKNLLIGEMVAKKI 480

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
            E  P++ G YVL+S  +S  ++W DA   R +M   G+RK P +S +EV   L A
Sbjct: 481 LESNPDDLGIYVLVSNFFSMAKKWDDAAVFRKIMKNTGMRKVPGYSAVEVNGDLQA 536



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 131/464 (28%), Positives = 247/464 (53%), Gaps = 9/464 (1%)

Query: 34  QLHAFIITSGPLFTHLRS--SLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQN 88
           Q+HA I+T+G  F    S   L+ +YG ++N+   R +F++M +RS   +N+++  Y++ 
Sbjct: 3   QIHALILTTGLFFNDANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRT 62

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
               + L ++  M+  G   PD+ T+ + +KAC+ L    +G  +  + +  G+  D FV
Sbjct: 63  NYPDEVLNLYYRMISEG-IKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFV 121

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            + ++ +Y   G++  A+ VFD M +  VVSW T+I+G+ ++    +A+ ++  M K   
Sbjct: 122 VSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERT 181

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           E D   +V ++ AC  L + + G  +H  +    +  +     +L+DMY K G +  A  
Sbjct: 182 EGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASR 241

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VF+ +  + V++W ++I+G+A NG     L     MQ  G +P+ +++ S LSAC+ +  
Sbjct: 242 VFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGN 301

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           LK G+SLH   +K+ L  + +  TALIDMYAKC  +  +  +F +   +  + WNA+++ 
Sbjct: 302 LKVGKSLHGHIVKR-LYLDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISS 360

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
              +G   +A+ LF +M    + P+ AT  SLL A +    +++       LI    +  
Sbjct: 361 YGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQP 420

Query: 449 VEVSTG-LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
            E     ++D+ S+ G +E A+++   + IK   + +W  +++G
Sbjct: 421 SEKHYACMVDLLSRAGQVEEAYQLIESMHIK-PGLAIWVALLSG 463


>gi|297738048|emb|CBI27249.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score =  369 bits (948), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 219/643 (34%), Positives = 341/643 (53%), Gaps = 57/643 (8%)

Query: 27  KSIAGTKQLHAFIITSG---PLFTHLR-SSLVRAYGHVSNVRILFDEMSERSSFLYNTVM 82
           K+++  +++HA ++  G    L    +  SL  ++GHV   R++FD +     + +  ++
Sbjct: 97  KTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMI 156

Query: 83  KMYAQNGASHDSLKMFLGMLR--LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT 140
           + Y  N +  + ++ +   LR  L EY  DN  + IV+KAC++L     G  LH +++  
Sbjct: 157 RWYFLNDSYSEIVQFYNTRLRKCLNEY--DNVVFSIVLKACSELRETDEGRKLHCQIVKV 214

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           G   D+FV   L+ MY    EV+ +R+VFD + + +VV W ++I GY +N   KE LV+F
Sbjct: 215 G-SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLF 273

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           + M +  VE +  ++ S++ AC  L  +  G+ +H  V       N      L+D+Y KC
Sbjct: 274 NRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKC 333

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           G + +A  VFD +S  D+V+WT+MI GYA  G  R AL LF   +++ + PN++T  S+L
Sbjct: 334 GDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVL 393

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           SAC+    L  GRS+H   IK   E +   E AL+DMYAKC+++  +  VF     K  +
Sbjct: 394 SACAQTGSLNMGRSVHCLGIKLGSE-DATFENALVDMYAKCHMIGDARYVFETVFDKDVI 452

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            WN+I++G   NG A +A+ELF QM  + V P+  TL S+L A A +   +   ++H Y 
Sbjct: 453 AWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYA 512

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           I+ G LS  + S  L                                             
Sbjct: 513 IKAGLLSGRDCSRSL--------------------------------------------- 527

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560
              LF +M++  ++PNEV FT+ L ACSH G+L EG   FN M + +       HY C+V
Sbjct: 528 --ELFGDMLKEKLEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMV 585

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620
           DLL RAGRL+EA D I  +P++P  ++ GA L  C +H   +LGEVA + + EL P+   
Sbjct: 586 DLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLELHPDKAC 645

Query: 621 NYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            YVL+S LY++  RW  A  V ++M ++GL K P  SL+++  
Sbjct: 646 YYVLMSNLYASEGRWSQANQVMELMKQRGLAKLPGWSLVDIET 688



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 106/321 (33%), Positives = 157/321 (48%), Gaps = 16/321 (4%)

Query: 223 GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
           G  K +   R IH L+    L +++     LV +Y   G V  ARL+FDR+   D+ +W 
Sbjct: 94  GICKTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWK 153

Query: 283 SMINGYALNGDVRNALGLFQLMQFEGVR-------PNSLTIGSLLSACSSLYYLKRGRSL 335
            MI  Y LN          +++QF   R        +++    +L ACS L     GR L
Sbjct: 154 VMIRWYFLNDSYS------EIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKL 207

Query: 336 HAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLA 395
           H   +K     +  V T L+DMYAKC  V+ S +VF     +  V W +++ G V N   
Sbjct: 208 HCQIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCL 266

Query: 396 RKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGL 455
           ++ + LF +M   +VE N  TL SL+ A   L  L Q   +H Y+I+ GF     + T L
Sbjct: 267 KEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPL 326

Query: 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP 515
           +D+Y KCG +  A  +F E+     D+V W+ +I GY   G+   A+ LF +     + P
Sbjct: 327 LDLYFKCGDIRDAFSVFDELST--IDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLP 384

Query: 516 NEVTFTSALHACSHGGLLDEG 536
           N VT +S L AC+  G L+ G
Sbjct: 385 NTVTTSSVLSACAQTGSLNMG 405


>gi|413918945|gb|AFW58877.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 768

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 205/624 (32%), Positives = 336/624 (53%), Gaps = 7/624 (1%)

Query: 47  THLRSSLVRAYGHVS---NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR 103
           T L + L+  YG  +   + R++FD M +R+   +  V+  +AQN    D++ +F  MLR
Sbjct: 80  TILSNHLITMYGRCAAPDSARMVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLR 139

Query: 104 LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163
           LG   PD +     ++AC +L    LG  +H + + +       V N L+ MY   G V 
Sbjct: 140 LGT-APDEFALGSAVRACAELGDLGLGRQVHAQAIKSDNGGHLIVQNALVTMYSKSGSVG 198

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE-PDCASVVSVLPAC 222
               +F+ + +  + SW ++I+G  +     +AL +F  M+  G+  P+     SV  AC
Sbjct: 199 DGFALFERIRDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRAC 258

Query: 223 GY-LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTW 281
              +  +E G  IH L    +L +N  A  +L DMY +C  ++ A  VF R+   D+V+W
Sbjct: 259 SVVINSLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESPDLVSW 318

Query: 282 TSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
            S+IN ++ +G +  A+ LF  M++  ++P+ +T+ +LL AC     L++GRS+H++ +K
Sbjct: 319 NSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLVK 378

Query: 342 QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVEL 401
             L  +V+V  +LI MY +C     +  VF  T+ +  V WN+IL  CV +       +L
Sbjct: 379 LGLGGDVMVCNSLISMYTRCLDFPSAMDVFHETNDRDVVTWNSILTACVQHRHMEDVFKL 438

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
           FR +   +   +  +LN++L A A L   + A  +H Y  + G +S   +S  LID Y+K
Sbjct: 439 FRLLHSSMPSLDRISLNNVLSASAELGYFEMAKQVHAYAFKVGLVSDAILSNALIDTYAK 498

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
           CGSL+ A+K+F EI    +D+  WS +I GY   G+ + A+ LF  M   GV+PN VTF 
Sbjct: 499 CGSLDDANKLF-EIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFV 557

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581
             L ACS  GL+DEG   ++ M   +      +H +C++DLL RAGRL EA   +  MP 
Sbjct: 558 GVLIACSRVGLVDEGCYYYSIMEPEYGIVPTKEHCSCVIDLLARAGRLSEAAKFVDQMPF 617

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENV 641
           +P   +W  LL A   H +VE+G+ AA+ +  ++P +   YVLL  +Y++   W +   +
Sbjct: 618 EPDIIMWNTLLAASRTHNDVEMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFARL 677

Query: 642 RDVMDEKGLRKAPAHSLIEVRNIL 665
           +  M   G++K+P  S I+++  L
Sbjct: 678 KKDMRSSGVQKSPGKSWIKLKGEL 701



 Score =  218 bits (555), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 147/509 (28%), Positives = 242/509 (47%), Gaps = 41/509 (8%)

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           +T + N LI MY       +AR VFD M + + VSW  +I+ + +N+   +A+ +F  ML
Sbjct: 79  NTILSNHLITMYGRCAAPDSARMVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSML 138

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
           + G  PD  ++ S + AC  L ++ +GR +H        G ++   NALV MY K GSV 
Sbjct: 139 RLGTAPDEFALGSAVRACAELGDLGLGRQVHAQAIKSDNGGHLIVQNALVTMYSKSGSVG 198

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV-RPNSLTIGSLLSAC 323
           +   +F+R+ ++D+ +W S+I G A  G   +AL +F+ M  EG+  PN    GS+  AC
Sbjct: 199 DGFALFERIRDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRAC 258

Query: 324 S-SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           S  +  L+ G  +H   +K  L+       +L DMYA+CN +  + +VF R      V W
Sbjct: 259 SVVINSLEYGEQIHGLCVKYKLDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESPDLVSW 318

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           N+++     +GL  +A+ LF +M    ++P+  T+ +LL A      L+Q  +IH YL++
Sbjct: 319 NSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLVK 378

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
            G    V V   LI +Y++C    SA  +F E    D+D+V W+ I+     H H E   
Sbjct: 379 LGLGGDVMVCNSLISMYTRCLDFPSAMDVFHE--TNDRDVVTWNSILTACVQHRHMEDVF 436

Query: 503 SLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD---------------LFNFMLENH 547
            LF+ +  S    + ++  + L A +  G  +                   L N +++ +
Sbjct: 437 KLFRLLHSSMPSLDRISLNNVLSASAELGYFEMAKQVHAYAFKVGLVSDAILSNALIDTY 496

Query: 548 QTCSRADHYTCIVDLLGRA----------------GRLDEAYDL---IRTMPLKPTHAVW 588
             C   D    + +++G                  G   EA DL   +R + +KP H  +
Sbjct: 497 AKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTF 556

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPE 617
             +L AC   G V+ G     +   +EPE
Sbjct: 557 VGVLIACSRVGLVDEG---CYYYSIMEPE 582



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 190/390 (48%), Gaps = 15/390 (3%)

Query: 222 CGYLKEIEMGRMIHELV-----AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER 276
           C  L+    GR++H  +         L +N    N L+ MY +C + + AR+VFD M +R
Sbjct: 50  CSRLRSFPQGRLVHRHLLASSAGAAYLARNTILSNHLITMYGRCAAPDSARMVFDGMLDR 109

Query: 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
           + V+W ++I  +A N    +A+GLF  M   G  P+   +GS + AC+ L  L  GR +H
Sbjct: 110 NPVSWAAVIAAHAQNSRCADAMGLFSSMLRLGTAPDEFALGSAVRACAELGDLGLGRQVH 169

Query: 337 AWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR 396
           A  IK +    +IV+ AL+ MY+K   V   F +F R   K    W +I+AG    G   
Sbjct: 170 AQAIKSDNGGHLIVQNALVTMYSKSGSVGDGFALFERIRDKDLFSWGSIIAGLAQQGREM 229

Query: 397 KAVELFRQMLVEVV-EPNDATLNSLLPAYAILAD-LQQAMNIHCYLIRYGFLSVVEVSTG 454
            A+ +FR+M+ E +  PN+    S+  A +++ + L+    IH   ++Y           
Sbjct: 230 DALHIFREMIAEGMHHPNEFHFGSVFRACSVVINSLEYGEQIHGLCVKYKLDRNSYAGCS 289

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           L D+Y++C  L+SA K+F    I+  D+V W+ +I  +   G    A+ LF EM  S ++
Sbjct: 290 LGDMYARCNKLDSAMKVFYR--IESPDLVSWNSLINAFSADGLLSEAMVLFSEMRYSSLK 347

Query: 515 PNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC--IVDLLGRAGRLDEA 572
           P+ +T  + L AC     L +G  + ++++   +     D   C  ++ +  R      A
Sbjct: 348 PDGITVMALLCACVGCDALRQGRSIHSYLV---KLGLGGDVMVCNSLISMYTRCLDFPSA 404

Query: 573 YDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
            D+      +     W ++L ACV H ++E
Sbjct: 405 MDVFHETNDRDV-VTWNSILTACVQHRHME 433


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 199/550 (36%), Positives = 300/550 (54%), Gaps = 2/550 (0%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           +Y  + +AC  +     G   H ++  T  +   F+ N ++ MY   G +  ARKVFD M
Sbjct: 12  SYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEM 71

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
            E ++VSWNT+IS Y +N    +   +F  ML+   +P+ ++ +  L +      +E+G+
Sbjct: 72  RERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGK 131

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            IH       LG N +   A+ +MYVKCG +  A LVF++MSE++ V WT ++ GY    
Sbjct: 132 QIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAE 191

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
              +AL LF  M  EGV  +      +L AC+ L  L  GR +H   +K  LE EV V T
Sbjct: 192 RQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGT 251

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
            L+D Y KC+ ++ + + F   S+   V W+A++ G    G   +A++ F  +    V+ 
Sbjct: 252 PLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDI 311

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           N  T  S+  A + LAD       H   I+   ++     + +I +YS+CG L+ A ++F
Sbjct: 312 NSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVF 371

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
               I D D V W+ IIAGY   G+   A+ LF+ M   GV+PN VTF + L ACSH GL
Sbjct: 372 E--SIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGL 429

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           + EG      M  N+   +  DHY C+VD+  RAG L EA +LIR+MP  P    W  LL
Sbjct: 430 VIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLL 489

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
           G C  + N+E+GE+AA+ LF+L+PE+   Y+L+  LY++  +WK+A NVR +M E+ LRK
Sbjct: 490 GGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGKWKEAANVRKMMAERNLRK 549

Query: 653 APAHSLIEVR 662
             + S I V+
Sbjct: 550 ELSCSWITVK 559



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 139/458 (30%), Positives = 234/458 (51%), Gaps = 12/458 (2%)

Query: 40  ITSGPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLK 96
           + + P F  L +S+++ Y   G +++ R +FDEM ER+   +NT++  YA+NG       
Sbjct: 40  VKNPPEF--LENSVLKMYCKCGSLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFC 97

Query: 97  MFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMY 156
           MF  ML L E  P+  TY   +++  + +  ++G  +H   + +G   +  V   +  MY
Sbjct: 98  MFSNMLEL-ETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMY 156

Query: 157 MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVV 216
           +  G ++ A  VF+ M E + V+W  ++ GY +     +AL +F  M+  GVE D     
Sbjct: 157 VKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFS 216

Query: 217 SVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER 276
            VL AC  L+E+  GR IH  +    L   ++    LVD YVKC ++  A   F+ +SE 
Sbjct: 217 IVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEP 276

Query: 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
           + V+W+++I GY   G+   AL  F+ ++   V  NS T  S+  ACS+L     G   H
Sbjct: 277 NDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAH 336

Query: 337 AWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR 396
           A  IK +L      E+A+I MY++C  +  + +VF        V W AI+AG  + G A 
Sbjct: 337 ADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAP 396

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYA---ILADLQQAMNIHCYLIRYGFLSVVEVST 453
           +A++LFR+M    V PN  T  ++L A +   ++ + +Q +        YG  + ++   
Sbjct: 397 EALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYL--ESMSSNYGVATTIDHYD 454

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
            ++DIYS+ G L+ A ++   +P    D + W  ++ G
Sbjct: 455 CMVDIYSRAGFLQEALELIRSMPFS-PDAMSWKCLLGG 491



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 126/406 (31%), Positives = 195/406 (48%), Gaps = 20/406 (4%)

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW--NALVDMYVKC 260
           M  +G+     S   +  ACG +K +  GR+ HE +   R  KN   +  N+++ MY KC
Sbjct: 1   MEDAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQ--RTVKNPPEFLENSVLKMYCKC 58

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           GS+ +AR VFD M ER++V+W ++I+ YA NG       +F  M     +PN  T    L
Sbjct: 59  GSLADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFL 118

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
            +  +   L+ G+ +H+  I+  L     V TA+ +MY KC  ++ +  VF + S+K  V
Sbjct: 119 RSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAV 178

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            W  I+ G         A+ LF +M+ E VE ++   + +L A A L +L     IH ++
Sbjct: 179 AWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHI 238

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           ++ G  S V V T L+D Y KC +LESA K F    I + + V WS +I GY   G  E 
Sbjct: 239 VKLGLESEVSVGTPLVDFYVKCSNLESATKAFE--WISEPNDVSWSALITGYCQMGEFEE 296

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD------ 554
           A+  F+ +    V  N  T+TS   ACS        L  FN   + H    ++       
Sbjct: 297 ALKTFESLRTRSVDINSFTYTSIFQACS-------ALADFNSGAQAHADAIKSSLVAYQH 349

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             + ++ +  R GRLD A  +  ++   P    W A++      GN
Sbjct: 350 GESAMITMYSRCGRLDYATRVFESID-DPDAVAWTAIIAGYAYQGN 394


>gi|357168001|ref|XP_003581434.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 757

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 207/623 (33%), Positives = 326/623 (52%), Gaps = 6/623 (0%)

Query: 47  THLRSSLVRAYGHVS---NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR 103
           T L + L+  YG  +   + R++FDEM  ++   + +V+  +AQN  S D+L +F  MLR
Sbjct: 76  TVLNNHLITMYGRCAAPESARLVFDEMPAKNPVSWASVIAAHAQNRRSTDALGLFSSMLR 135

Query: 104 LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163
            G   PD +     ++AC +L    +G  +H + + +    D  V N L+ MY   G V 
Sbjct: 136 SGTA-PDQFALGSTVRACAELGDIGVGRQVHAQAMKSENGSDLIVQNALVTMYSKSGLVA 194

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE-PDCASVVSVLPAC 222
               +F  M E   +SW ++I+G+ +     EAL +F  M+  G+  P+     SV  AC
Sbjct: 195 DGFLLFGRMREKDPISWGSIIAGFAQQGCEMEALQIFREMVAEGMHHPNEFHFGSVFSAC 254

Query: 223 GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
           G L  +E G  IH L    RL  N  A  +L DMY +C  +  A+ VF  +   D+V+W 
Sbjct: 255 GVLGSLEYGEQIHSLSVKYRLDHNSYAGCSLSDMYARCKKLESAKRVFYGIDAPDLVSWN 314

Query: 283 SMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           S+IN  ++ G +  A+ L   M+  G+RP+ +T+  LL AC     ++ GR +H++ +K 
Sbjct: 315 SIINACSVEGLLSEAMVLLSEMRGSGLRPDGITVRGLLCACVGCDAIQHGRLMHSYLVKL 374

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
            L+ +V V  +L+ MYA+C     +  VF  T  +  V WN+IL  CV +       +LF
Sbjct: 375 GLDGDVSVCNSLLSMYARCMDFSSAMDVFHETRDRDVVTWNSILTACVQHQHLEVVFKLF 434

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
             +   +   +  +LN++L A A L   +    +H    + G ++   +S GLID Y+KC
Sbjct: 435 NLLQRSLPSLDRISLNNVLSASAELGYFEMVKQVHTCTFKVGLVNDTMLSNGLIDTYAKC 494

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           GSL+ A K+F E+   + D+  WS +I GY   G+   A+ LF  M   GV+PN VTF  
Sbjct: 495 GSLDDAVKLF-EMMGTNSDVFSWSSLIVGYAQSGYPRKALDLFARMRNLGVRPNHVTFVG 553

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
            L ACS  GL+DEG   ++ M   H      +H +C++DLL RAGRL EA   +  MP +
Sbjct: 554 VLTACSRVGLVDEGCYYYSIMEPEHGVLPTREHCSCVIDLLARAGRLTEAAKFVDQMPFE 613

Query: 583 PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642
           P   +W  LL     H +VE+G  AA+ +  ++P +   YVLL  +YSA   W +   ++
Sbjct: 614 PDIVMWKTLLAGSKTHNDVEMGRRAAEGILNIDPSHSAAYVLLCNIYSASGDWNEFARLK 673

Query: 643 DVMDEKGLRKAPAHSLIEVRNIL 665
             M   G++K+P  S ++++  L
Sbjct: 674 KAMRSSGVKKSPGKSWVKLKGEL 696



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 155/537 (28%), Positives = 258/537 (48%), Gaps = 45/537 (8%)

Query: 121 CTDLAWRKLGIALHGRVLIT---GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           C+ L    LG  +H  +L +       +T + N LI MY      ++AR VFD M   + 
Sbjct: 48  CSRLRALCLGCLVHRHLLASPDPNLVRNTVLNNHLITMYGRCAAPESARLVFDEMPAKNP 107

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSW ++I+ + +N  + +AL +F  ML+SG  PD  ++ S + AC  L +I +GR +H  
Sbjct: 108 VSWASVIAAHAQNRRSTDALGLFSSMLRSGTAPDQFALGSTVRACAELGDIGVGRQVHAQ 167

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                 G ++   NALV MY K G V +  L+F RM E+D ++W S+I G+A  G    A
Sbjct: 168 AMKSENGSDLIVQNALVTMYSKSGLVADGFLLFGRMREKDPISWGSIIAGFAQQGCEMEA 227

Query: 298 LGLFQLMQFEGV-RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           L +F+ M  EG+  PN    GS+ SAC  L  L+ G  +H+ ++K  L+       +L D
Sbjct: 228 LQIFREMVAEGMHHPNEFHFGSVFSACGVLGSLEYGEQIHSLSVKYRLDHNSYAGCSLSD 287

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MYA+C  ++ + +VF        V WN+I+  C   GL  +A+ L  +M    + P+  T
Sbjct: 288 MYARCKKLESAKRVFYGIDAPDLVSWNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGIT 347

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           +  LL A      +Q    +H YL++ G    V V   L+ +Y++C    SA  +F E  
Sbjct: 348 VRGLLCACVGCDAIQHGRLMHSYLVKLGLDGDVSVCNSLLSMYARCMDFSSAMDVFHE-- 405

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL------------ 524
            +D+D+V W+ I+     H H E    LF  + +S    + ++  + L            
Sbjct: 406 TRDRDVVTWNSILTACVQHQHLEVVFKLFNLLQRSLPSLDRISLNNVLSASAELGYFEMV 465

Query: 525 ---HACSHG-GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG---------------- 564
              H C+   GL+++ + L N +++ +  C   D    + +++G                
Sbjct: 466 KQVHTCTFKVGLVNDTM-LSNGLIDTYAKCGSLDDAVKLFEMMGTNSDVFSWSSLIVGYA 524

Query: 565 RAGRLDEAYDL---IRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
           ++G   +A DL   +R + ++P H  +  +L AC   G V+ G     +   +EPE+
Sbjct: 525 QSGYPRKALDLFARMRNLGVRPNHVTFVGVLTACSRVGLVDEG---CYYYSIMEPEH 578


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 207/607 (34%), Positives = 331/607 (54%), Gaps = 4/607 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G++S  R LFD M +RS   +  ++  YAQ+    ++  +F  M R G   PD+ T   +
Sbjct: 87  GNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMV-PDHITLATL 145

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +   T+         +HG V+  G+D    V N L+  Y     +  A  +F  M E   
Sbjct: 146 LSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDN 205

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V++N L++GY K  +  +A+ +F  M   G  P   +  +VL A   + +IE G+ +H  
Sbjct: 206 VTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSF 265

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V       N+   NAL+D Y K   + EAR +F  M E D +++  +I   A NG V  +
Sbjct: 266 VVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEES 325

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L LF+ +QF           +LLS  ++   L+ GR +H+  I  +   EV+V  +L+DM
Sbjct: 326 LELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDM 385

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAKC+    + ++FA  + + +VPW A+++G V  GL    ++LF +M    +  + AT 
Sbjct: 386 YAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATY 445

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            S+L A A LA L     +H  +IR G LS V   + L+D+Y+KCGS++ A ++F E+P+
Sbjct: 446 ASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPV 505

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
           ++   V W+ +I+ Y  +G G  A+  F++M+ SG+QPN V+F S L ACSH GL++EGL
Sbjct: 506 RNS--VSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGL 563

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             FN M + ++   R +HY  +VD+L R+GR DEA  L+  MP +P   +W ++L +C I
Sbjct: 564 QYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRI 623

Query: 598 HGNVELGEVAAKWLFELEP-ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           H N EL   AA  LF ++   +   YV +S +Y+A   W     V+  + E+G+RK PA+
Sbjct: 624 HKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAY 683

Query: 657 SLIEVRN 663
           S +E++ 
Sbjct: 684 SWVEIKQ 690



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 228/451 (50%), Gaps = 4/451 (0%)

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N +I  Y+  G +  AR +FD+M + SVV+W  LI GY ++    EA  +F  M + G+ 
Sbjct: 77  NTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMV 136

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PD  ++ ++L      + +     +H  V        +   N+L+D Y K  S+  A  +
Sbjct: 137 PDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHL 196

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F  M+E+D VT+ +++ GY+  G   +A+ LF  MQ  G RP+  T  ++L+A   +  +
Sbjct: 197 FKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDI 256

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           + G+ +H++ +K N    V V  AL+D Y+K + +  + ++F    +   + +N ++  C
Sbjct: 257 EFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCC 316

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
             NG   +++ELFR++     +       +LL   A   +L+    IH   I    +S V
Sbjct: 317 AWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEV 376

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            V   L+D+Y+KC     A++IF+++    +  V W+ +I+GY   G  E  + LF EM 
Sbjct: 377 LVGNSLVDMYAKCDKFGEANRIFADLA--HQSSVPWTALISGYVQKGLHEDGLKLFVEMH 434

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           ++ +  +  T+ S L AC++   L  G  L + ++ +    S     + +VD+  + G +
Sbjct: 435 RAKIGADSATYASILRACANLASLTLGKQLHSRIIRS-GCLSNVFSGSALVDMYAKCGSI 493

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
            EA  + + MP++ +   W AL+ A   +G+
Sbjct: 494 KEALQMFQEMPVRNS-VSWNALISAYAQNGD 523



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 192/382 (50%), Gaps = 10/382 (2%)

Query: 33  KQLHAFIITSGPLFT-HLRSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+H+F++    ++   + ++L+  Y     +   R LF EM E     YN ++   A N
Sbjct: 260 QQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWN 319

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   +SL++F   L+   ++   + +  ++    +    ++G  +H + ++T    +  V
Sbjct: 320 GRVEESLELFRE-LQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLV 378

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           GN L+ MY    +   A ++F  +   S V W  LISGY +    ++ L +F  M ++ +
Sbjct: 379 GNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKI 438

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
             D A+  S+L AC  L  + +G+ +H  +       N+ + +ALVDMY KCGS+ EA  
Sbjct: 439 GADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQ 498

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +F  M  R+ V+W ++I+ YA NGD  +AL  F+ M   G++PNS++  S+L ACS    
Sbjct: 499 MFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGL 558

Query: 329 LKRG-RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAIL 386
           ++ G +  ++ T    LE       +++DM  +      + ++ AR   +   + W++IL
Sbjct: 559 VEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSIL 618

Query: 387 AGC-VHNG--LARKAVELFRQM 405
             C +H    LA KA +    M
Sbjct: 619 NSCRIHKNQELAIKAADQLFNM 640



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 193/407 (47%), Gaps = 18/407 (4%)

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL-----GKNIAAWNALVDMY 257
           M+K+G +P+          C +  +++      +L A  +L      KN+ + N ++  Y
Sbjct: 33  MIKTGFDPN---------TCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGY 83

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
           +K G+++ AR +FD M +R VVTWT +I GYA +     A  LF  M   G+ P+ +T+ 
Sbjct: 84  LKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLA 143

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           +LLS  +    +     +H   +K   +  ++V  +L+D Y K   + L+  +F   ++K
Sbjct: 144 TLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEK 203

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V +NA+L G    G    A+ LF +M      P++ T  ++L A   + D++    +H
Sbjct: 204 DNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVH 263

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            ++++  F+  V V+  L+D YSK   +  A K+F E+P  + D + ++V+I     +G 
Sbjct: 264 SFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMP--EVDGISYNVLITCCAWNGR 321

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
            E ++ LF+E+  +     +  F + L   ++   L+ G  + +  +      S      
Sbjct: 322 VEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVT-DAISEVLVGN 380

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
            +VD+  +  +  EA  +   +  + +   W AL+   V  G  E G
Sbjct: 381 SLVDMYAKCDKFGEANRIFADLAHQSS-VPWTALISGYVQKGLHEDG 426


>gi|356521639|ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Glycine max]
          Length = 699

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 216/614 (35%), Positives = 349/614 (56%), Gaps = 13/614 (2%)

Query: 56  AYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY-NPDNYT- 113
           ++G + + R +F+ +  R  + +  +++ Y  N      + ++  ++RL  +  P +Y  
Sbjct: 77  SFGQLRHARKIFNHLPTRDLYCFKVMIRAYFLNDTPSGVVSLYR-LMRLSLHPTPHDYVL 135

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           + IV K+C +    +     H    +     D+FV  CL+  Y  F  V  A + FD + 
Sbjct: 136 FSIVFKSCAESRDFQTLTITHCH-FVKSLPSDSFVLTCLVDAYAKFARVDEATRAFDEIH 194

Query: 174 EHS-VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
           E+  VVSW ++I  Y +N  A+E L +F+ M ++ V+ +  +V S++ AC  L  +  G+
Sbjct: 195 ENDDVVSWTSMIVAYVQNDCAREGLTLFNRMREAFVDGNEFTVGSLVSACTKLNWLHQGK 254

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS----ERDVVTWTSMINGY 288
            +H  V    +  N     +L++MYVKCG++ +A  VFD  S    +RD+V+WT+MI GY
Sbjct: 255 WVHGFVIKNGICVNSYLTTSLLNMYVKCGNIQDACKVFDESSSSSYDRDLVSWTAMIVGY 314

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
           +  G    AL LF+  ++ G+ PNS+T+ SLLS+C+ L     G+ LH   +K  L+ + 
Sbjct: 315 SQRGYPHLALELFKDKKWSGILPNSVTVSSLLSSCAQLGNSVMGKLLHGLAVKCGLD-DH 373

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            V  AL+DMYAKC +V  +  VF    +K  V WN+I++G V +G A +A+ LFR+M +E
Sbjct: 374 PVRNALVDMYAKCGVVSDARCVFEAMLEKDVVSWNSIISGFVQSGEAYEALNLFRRMGLE 433

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL-SVVEVSTGLIDIYSKCGSLES 467
           +  P+  T+  +L A A L  L    ++H   ++ G + S + V T L++ Y+KCG   +
Sbjct: 434 LFSPDAVTVVGILSACASLGMLHLGCSVHGLALKDGLVVSSIYVGTALLNFYAKCGDARA 493

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A  +F  +   +K+ V W  +I GYGM G G  +++LF++M++  V+PNEV FT+ L AC
Sbjct: 494 ARMVFDSM--GEKNAVTWGAMIGGYGMQGDGNGSLTLFRDMLEELVEPNEVVFTTILAAC 551

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           SH G++ EG  LFN M           HY C+VD+L RAG L+EA D I  MP++P+ +V
Sbjct: 552 SHSGMVGEGSRLFNLMCGELNFVPSMKHYACMVDMLARAGNLEEALDFIERMPVQPSVSV 611

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           +GA L  C +H   ELG  A K + EL P+    YVL+S LY++  RW   + VR+++ +
Sbjct: 612 FGAFLHGCGLHSRFELGGAAIKKMLELHPDEACYYVLVSNLYASDGRWGMVKQVREMIKQ 671

Query: 648 KGLRKAPAHSLIEV 661
           +GL K P  S +E+
Sbjct: 672 RGLNKVPGCSSVEM 685


>gi|4049345|emb|CAA22570.1| putative protein [Arabidopsis thaliana]
 gi|7270147|emb|CAB79960.1| putative protein [Arabidopsis thaliana]
          Length = 688

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 209/637 (32%), Positives = 347/637 (54%), Gaps = 23/637 (3%)

Query: 34  QLHAFIITSGPLFTHLRS------SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           Q+H F  TSG  FT           + R  G   N   +F+ + +     +NT++  +  
Sbjct: 22  QIHGFSTTSG--FTSFVCVSNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDD 79

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           N  + +    F+  ++      D +TY   +  C       LG+ L   V+ TG + D  
Sbjct: 80  NQIALN----FVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLESDLV 135

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA-YAKEALVVFDWMLKS 206
           VGN  I MY   G  + AR+VFD M    ++SWN+L+SG  +   +  EA+V+F  M++ 
Sbjct: 136 VGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMRE 195

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           GVE D  S  SV+  C +  ++++ R IH L         +   N L+  Y KCG +   
Sbjct: 196 GVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAV 255

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
           + VF +MSER+VV+WT+MI+    N D  +A+ +F  M+F+GV PN +T   L++A    
Sbjct: 256 KSVFHQMSERNVVSWTTMISS---NKD--DAVSIFLNMRFDGVYPNEVTFVGLINAVKCN 310

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             +K G  +H   IK     E  V  + I +YAK   ++ + + F   + ++ + WNA++
Sbjct: 311 EQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMI 370

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL--QQAMNIHCYLIRYG 444
           +G   NG + +A+++F     E + PN+ T  S+L A A   D+  +Q    H +L++ G
Sbjct: 371 SGFAQNGFSHEALKMFLSAAAETM-PNEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLG 429

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
             S   VS+ L+D+Y+K G+++ + K+F+E+  K++   VW+ II+ Y  HG  ET ++L
Sbjct: 430 LNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQ--FVWTSIISAYSSHGDFETVMNL 487

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           F +M++  V P+ VTF S L AC+  G++D+G ++FN M+E +      +HY+C+VD+LG
Sbjct: 488 FHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDMLG 547

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
           RAGRL EA +L+  +P  P  ++  ++LG+C +HGNV++G   A+   E++PE  G+YV 
Sbjct: 548 RAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQ 607

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +  +Y+    W  A  +R  M +K + K    S I+V
Sbjct: 608 MYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDV 644



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 141/508 (27%), Positives = 239/508 (47%), Gaps = 42/508 (8%)

Query: 110 DNYTYPIVIKACT-DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           D  T  + +KAC  DL   K G  +HG    +GF     V N ++ MY   G    A  +
Sbjct: 2   DEVTLCLALKACRGDL---KRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCI 58

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           F+ + +  VVSWNT++SG+  N  A   +V    M  +GV  D  +  + L  C   +  
Sbjct: 59  FENLVDPDVVSWNTILSGFDDNQIALNFVV---RMKSAGVVFDAFTYSTALSFCVGSEGF 115

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
            +G  +   V    L  ++   N+ + MY + GS   AR VFD MS +D+++W S+++G 
Sbjct: 116 LLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGL 175

Query: 289 ALNGDVR-NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           +  G     A+ +F+ M  EGV  + ++  S+++ C     LK  R +H   IK+  E  
Sbjct: 176 SQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESL 235

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           + V   L+  Y+KC +++    VF + S++  V W  +++    +     AV +F  M  
Sbjct: 236 LEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNKDD-----AVSIFLNMRF 290

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           + V PN+ T   L+ A      +++ + IH   I+ GF+S   V    I +Y+K  +LE 
Sbjct: 291 DGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALED 350

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A K F +I    ++I+ W+ +I+G+  +G    A+ +F     +   PNE TF S L+A 
Sbjct: 351 AKKAFEDITF--REIISWNAMISGFAQNGFSHEALKMFLS-AAAETMPNEYTFGSVLNAI 407

Query: 528 S-------------HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYD 574
           +             H  LL  GL+          +C      + ++D+  + G +DE+  
Sbjct: 408 AFAEDISVKQGQRCHAHLLKLGLN----------SCPVVS--SALLDMYAKRGNIDESEK 455

Query: 575 LIRTMPLKPTHAVWGALLGACVIHGNVE 602
           +   M  K    VW +++ A   HG+ E
Sbjct: 456 VFNEMSQK-NQFVWTSIISAYSSHGDFE 482


>gi|302796685|ref|XP_002980104.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
 gi|300152331|gb|EFJ18974.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
          Length = 623

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 211/613 (34%), Positives = 331/613 (53%), Gaps = 10/613 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH---VSNVRILFDEMSERS 74
           L++QY  +KS+A  +++H+ +I++G    T+L + LV+ YG    + + R  F  + +R+
Sbjct: 8   LLKQYGNSKSLADGRRVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFRGIHQRN 67

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
            F +  ++ +  QNG + + L++ L  + L     +  T+  ++ AC+      LG  +H
Sbjct: 68  VFSWTILISLLVQNGEASEGLEL-LKFMDLEGTEANKITFISLLGACSVTGDLSLGKKIH 126

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
            RV   G + D   GN L+ MY     +  AR VF+ M    VVSW  +IS Y    Y  
Sbjct: 127 ERVRAKGLETDIITGNALLNMYTTCDSLDEARLVFERMVFRDVVSWTIIISAYAHAGYPL 186

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           EAL ++  M +    PD  +++SVL AC  L+ +  G+ IHE +    +  ++    A+V
Sbjct: 187 EALQLYRRMEQEFSRPDAVTLISVLEACASLRTLVEGKTIHERIVASGVETDVFVGTAVV 246

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
             Y KC +V++AR VFDR+ ++D+V W +MI  YA N     A  L+  M    +RPN +
Sbjct: 247 SFYGKCEAVDDARQVFDRIMDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMRPNDV 306

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T+ +LL +CSS   ++RG SLH     +       V  ALI+MYAKC  ++ + +VF   
Sbjct: 307 TLITLLDSCSSTCKMERGSSLHREAAARGYLSHTSVVNALINMYAKCGSLENATRVFIEA 366

Query: 375 SKKKT--VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           + + T  + WN ++       L  +A++++ +M  E ++ +D T  ++L   A   D   
Sbjct: 367 TNRTTNVITWNTMIVANAQEDLNLEALQIYHRMNQEGIKASDVTYGTVLAVCANFGDFTT 426

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              +H   +  G  S V V   LI +Y  CG+LE+A   F  +    K++V WS I+A Y
Sbjct: 427 GREVHSRSLATGCCSDV-VQNSLICLYGGCGNLEAAQTAFESVA--SKNVVSWSSIVAAY 483

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
             +G  + A +LF  M Q GV PN VTFTS LHACSH GL DEG   F  M  +H     
Sbjct: 484 ARNGEEDRARNLFWTMNQDGVLPNIVTFTSVLHACSHAGLADEGWSYFLSMQGDHHLEPT 543

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
            +HY C+V+LL ++GR+ +A   +  MP++P  + W +LLGAC +H + E G +AAK L 
Sbjct: 544 PEHYGCMVNLLAKSGRVKQAASFMSAMPVQPDASAWRSLLGACEVHTDKEYGALAAKQLL 603

Query: 613 ELEPENPGNYVLL 625
           + EP N   YVLL
Sbjct: 604 DAEPRNSAAYVLL 616



 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 156/487 (32%), Positives = 257/487 (52%), Gaps = 3/487 (0%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           TY  ++K   +      G  +H +++  G D DT++GN L+ MY   G +  AR  F  +
Sbjct: 4   TYEALLKQYGNSKSLADGRRVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFRGI 63

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
            + +V SW  LIS   +N  A E L +  +M   G E +  + +S+L AC    ++ +G+
Sbjct: 64  HQRNVFSWTILISLLVQNGEASEGLELLKFMDLEGTEANKITFISLLGACSVTGDLSLGK 123

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            IHE V    L  +I   NAL++MY  C S++EARLVF+RM  RDVV+WT +I+ YA  G
Sbjct: 124 KIHERVRAKGLETDIITGNALLNMYTTCDSLDEARLVFERMVFRDVVSWTIIISAYAHAG 183

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
               AL L++ M+ E  RP+++T+ S+L AC+SL  L  G+++H   +   +E +V V T
Sbjct: 184 YPLEALQLYRRMEQEFSRPDAVTLISVLEACASLRTLVEGKTIHERIVASGVETDVFVGT 243

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           A++  Y KC  V  + QVF R   K  V WNA++     N    KA  L+ +M+   + P
Sbjct: 244 AVVSFYGKCEAVDDARQVFDRIMDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMRP 303

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           ND TL +LL + +    +++  ++H      G+LS   V   LI++Y+KCGSLE+A ++F
Sbjct: 304 NDVTLITLLDSCSSTCKMERGSSLHREAAARGYLSHTSVVNALINMYAKCGSLENATRVF 363

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
            E   +  +++ W+ +I           A+ ++  M Q G++ ++VT+ + L  C++ G 
Sbjct: 364 IEATNRTTNVITWNTMIVANAQEDLNLEALQIYHRMNQEGIKASDVTYGTVLAVCANFGD 423

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
              G ++ +  L     CS     + I  L G  G L+ A     ++  K     W +++
Sbjct: 424 FTTGREVHSRSLAT-GCCSDVVQNSLIC-LYGGCGNLEAAQTAFESVASKNV-VSWSSIV 480

Query: 593 GACVIHG 599
            A   +G
Sbjct: 481 AAYARNG 487


>gi|30689384|ref|NP_194969.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75147159|sp|Q84MA3.1|PP345_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g32430, mitochondrial; Flags: Precursor
 gi|30102674|gb|AAP21255.1| At4g32430 [Arabidopsis thaliana]
 gi|110742925|dbj|BAE99358.1| hypothetical protein [Arabidopsis thaliana]
 gi|332660658|gb|AEE86058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 209/637 (32%), Positives = 347/637 (54%), Gaps = 23/637 (3%)

Query: 34  QLHAFIITSGPLFTHLRS------SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           Q+H F  TSG  FT           + R  G   N   +F+ + +     +NT++  +  
Sbjct: 97  QIHGFSTTSG--FTSFVCVSNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTILSGFDD 154

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           N  + +    F+  ++      D +TY   +  C       LG+ L   V+ TG + D  
Sbjct: 155 NQIALN----FVVRMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLESDLV 210

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA-YAKEALVVFDWMLKS 206
           VGN  I MY   G  + AR+VFD M    ++SWN+L+SG  +   +  EA+V+F  M++ 
Sbjct: 211 VGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMRE 270

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           GVE D  S  SV+  C +  ++++ R IH L         +   N L+  Y KCG +   
Sbjct: 271 GVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAV 330

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
           + VF +MSER+VV+WT+MI+    N D  +A+ +F  M+F+GV PN +T   L++A    
Sbjct: 331 KSVFHQMSERNVVSWTTMISS---NKD--DAVSIFLNMRFDGVYPNEVTFVGLINAVKCN 385

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             +K G  +H   IK     E  V  + I +YAK   ++ + + F   + ++ + WNA++
Sbjct: 386 EQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMI 445

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL--QQAMNIHCYLIRYG 444
           +G   NG + +A+++F     E + PN+ T  S+L A A   D+  +Q    H +L++ G
Sbjct: 446 SGFAQNGFSHEALKMFLSAAAETM-PNEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLG 504

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
             S   VS+ L+D+Y+K G+++ + K+F+E+  K++   VW+ II+ Y  HG  ET ++L
Sbjct: 505 LNSCPVVSSALLDMYAKRGNIDESEKVFNEMSQKNQ--FVWTSIISAYSSHGDFETVMNL 562

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           F +M++  V P+ VTF S L AC+  G++D+G ++FN M+E +      +HY+C+VD+LG
Sbjct: 563 FHKMIKENVAPDLVTFLSVLTACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDMLG 622

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
           RAGRL EA +L+  +P  P  ++  ++LG+C +HGNV++G   A+   E++PE  G+YV 
Sbjct: 623 RAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQ 682

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +  +Y+    W  A  +R  M +K + K    S I+V
Sbjct: 683 MYNIYAEKEEWDKAAEIRKAMRKKNVSKEAGFSWIDV 719



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 152/556 (27%), Positives = 264/556 (47%), Gaps = 47/556 (8%)

Query: 66  LFDEMSER--SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNP--DNYTYPIVIKAC 121
           LFD  S+R  ++ + +++ +   +N  +  +L +F   L+LG +    D  T  + +KAC
Sbjct: 30  LFDGSSQRNATTSINHSISESLRRNSPAR-ALSIFKENLQLGYFGRHMDEVTLCLALKAC 88

Query: 122 T-DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
             DL   K G  +HG    +GF     V N ++ MY   G    A  +F+ + +  VVSW
Sbjct: 89  RGDL---KRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNALCIFENLVDPDVVSW 145

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
           NT++SG+  N  A   +V    M  +GV  D  +  + L  C   +   +G  +   V  
Sbjct: 146 NTILSGFDDNQIALNFVV---RMKSAGVVFDAFTYSTALSFCVGSEGFLLGLQLQSTVVK 202

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR-NALG 299
             L  ++   N+ + MY + GS   AR VFD MS +D+++W S+++G +  G     A+ 
Sbjct: 203 TGLESDLVVGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLSQEGTFGFEAVV 262

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           +F+ M  EGV  + ++  S+++ C     LK  R +H   IK+  E  + V   L+  Y+
Sbjct: 263 IFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYS 322

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           KC +++    VF + S++  V W  +++    +     AV +F  M  + V PN+ T   
Sbjct: 323 KCGVLEAVKSVFHQMSERNVVSWTTMISSNKDD-----AVSIFLNMRFDGVYPNEVTFVG 377

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           L+ A      +++ + IH   I+ GF+S   V    I +Y+K  +LE A K F +I    
Sbjct: 378 LINAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITLYAKFEALEDAKKAFEDITF-- 435

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS----------- 528
           ++I+ W+ +I+G+  +G    A+ +F     +   PNE TF S L+A +           
Sbjct: 436 REIISWNAMISGFAQNGFSHEALKMFLS-AAAETMPNEYTFGSVLNAIAFAEDISVKQGQ 494

Query: 529 --HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
             H  LL  GL+          +C      + ++D+  + G +DE+  +   M  K    
Sbjct: 495 RCHAHLLKLGLN----------SCPVVS--SALLDMYAKRGNIDESEKVFNEMSQK-NQF 541

Query: 587 VWGALLGACVIHGNVE 602
           VW +++ A   HG+ E
Sbjct: 542 VWTSIISAYSSHGDFE 557


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 189/467 (40%), Positives = 284/467 (60%), Gaps = 3/467 (0%)

Query: 197 LVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
           L V D +    +EP+      +L  C YL++++ GR IH  +       ++   N +++M
Sbjct: 90  LYVLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNM 149

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y KCGS+ EA+ +FD+M  +D+V+WT +I+GY+ +G    AL LF  M   G +PN  T+
Sbjct: 150 YAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTL 209

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
            SLL A  +      GR LHA+++K   +  V V ++L+DMYA+   ++ +  +F   + 
Sbjct: 210 SSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAA 269

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           K  V WNA++AG    G     + LF QML +  EP   T +S+  A A    L+Q   +
Sbjct: 270 KNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWV 329

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H ++I+ G   +  +   LID+Y+K GS++ A K+F  +    +DIV W+ II+GY  HG
Sbjct: 330 HAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLV--KQDIVSWNSIISGYAQHG 387

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
            G  A+ LF++M+++ VQPNE+TF S L ACSH GLLDEG   F  M + H+  ++  H+
Sbjct: 388 LGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIEAQVAHH 446

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
             +VDLLGRAGRL+EA   I  MP+KPT AVWGALLG+C +H N++LG  AA+ +FEL+P
Sbjct: 447 VTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDP 506

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            + G +VLLS +Y++  R  DA  VR +M E G++K PA S +E+ N
Sbjct: 507 HDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIEN 553



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 124/404 (30%), Positives = 211/404 (52%), Gaps = 1/404 (0%)

Query: 99  LGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMN 158
           L ++  G   P+   Y  ++  CT L   K G A+H  +  + F+ D  + N ++ MY  
Sbjct: 93  LDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAK 152

Query: 159 FGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSV 218
            G ++ A+ +FD M    +VSW  LISGY ++  A EAL +F  ML  G +P+  ++ S+
Sbjct: 153 CGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSL 212

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
           L A G       GR +H          N+   ++L+DMY +   + EA+++F+ ++ ++V
Sbjct: 213 LKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNV 272

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           V+W ++I G+A  G+  + + LF  M  +G  P   T  S+ +AC+S   L++G+ +HA 
Sbjct: 273 VSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAH 332

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
            IK   +    +   LIDMYAK   +K + +VF R  K+  V WN+I++G   +GL  +A
Sbjct: 333 VIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEA 392

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
           ++LF QML   V+PN+ T  S+L A +    L +       + ++   + V     ++D+
Sbjct: 393 LQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDL 452

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
             + G L  A+K   E+PIK     VW  ++    MH + +  V
Sbjct: 453 LGRAGRLNEANKFIEEMPIK-PTAAVWGALLGSCRMHKNMDLGV 495



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 176/335 (52%), Gaps = 6/335 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +   + LFD+M  +    +  ++  Y+Q+G + ++L +F  ML LG + P+ +T   +
Sbjct: 154 GSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLG-FQPNEFTLSSL 212

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +KA         G  LH   L  G+DM+  VG+ L+ MY  +  ++ A+ +F+++   +V
Sbjct: 213 LKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNV 272

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSWN LI+G+ +    +  + +F  ML+ G EP   +  SV  AC     +E G+ +H  
Sbjct: 273 VSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAH 332

Query: 238 V--AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
           V  +GG+    I   N L+DMY K GS+ +A+ VF R+ ++D+V+W S+I+GYA +G   
Sbjct: 333 VIKSGGQPIAYIG--NTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGA 390

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            AL LF+ M    V+PN +T  S+L+ACS    L  G+       K  +E +V     ++
Sbjct: 391 EALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVV 450

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVP-WNAILAGC 389
           D+  +   +  + +       K T   W A+L  C
Sbjct: 451 DLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSC 485



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 157/294 (53%), Gaps = 8/294 (2%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +QLHAF +  G  +  H+ SSL+  Y    H+   +++F+ ++ ++   +N ++  +A+ 
Sbjct: 226 RQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARK 285

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G     +++FL MLR G + P ++TY  V  AC      + G  +H  V+ +G     ++
Sbjct: 286 GEGEHVMRLFLQMLRQG-FEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYI 344

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           GN LI MY   G +K A+KVF  + +  +VSWN++ISGY ++    EAL +F+ MLK+ V
Sbjct: 345 GNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKV 404

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +P+  + +SVL AC +   ++ G+   EL+   ++   +A    +VD+  + G +NEA  
Sbjct: 405 QPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANK 464

Query: 269 VFDRMSERDVVT-WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
             + M  +     W +++    ++ ++   LG++   Q   + P+      LLS
Sbjct: 465 FIEEMPIKPTAAVWGALLGSCRMHKNMD--LGVYAAEQIFELDPHDSGPHVLLS 516


>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Brachypodium distachyon]
          Length = 773

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 223/634 (35%), Positives = 334/634 (52%), Gaps = 14/634 (2%)

Query: 38  FIITSGPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDS 94
           F + +G     + SSLV  Y   G + +   LFDEM ER    +  V+    +NG     
Sbjct: 142 FGLLAGDGSVAVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKG 201

Query: 95  LKMFLGMLRLGE---YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNC 151
           +   + M+RL       P++ T    ++AC  L     G  LHG  +  G      V + 
Sbjct: 202 ICYLVQMIRLAGDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSA 261

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           L +MY      + A  +F  + E  VVSW  LI  Y +   A+EA+ +F  M +SG++PD
Sbjct: 262 LFSMYSKCDMTEDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPD 321

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFD 271
              V  VL   G    +  G+  H ++     G ++   N+L+ MY K   V+ A  VF 
Sbjct: 322 EVLVSCVLSGLGSSANVNRGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFG 381

Query: 272 RMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA---CSSLYY 328
            + +RD  +W+ M+ GY   G     L L++ MQ          I SL+SA   CS L  
Sbjct: 382 MLHQRDDESWSLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGR 441

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILA 387
           L+ G+S+H ++IK  L+ E  +  +LI MY +C   +L+ ++FA    ++  V WNA+++
Sbjct: 442 LRLGQSVHCYSIKCLLD-ENSITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALIS 500

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
              H G +  A+ L+ QML E V+PN +TL +++ A A LA L+    +H Y+   G  S
Sbjct: 501 SYSHVGRSNDALSLYGQMLTEDVKPNSSTLITVISACANLAALEHGELLHSYVKNMGLES 560

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            V +ST L+D+Y+KCG L +A  IF  +    +D+V W+V+I+GYGMHG    A+ LF E
Sbjct: 561 DVSISTALVDMYTKCGQLGTARGIFDSM--LQRDVVTWNVMISGYGMHGEANQALKLFSE 618

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M    ++PN +TF + L AC H GL+DEG  LF   +  ++      HY C+VDLLG++G
Sbjct: 619 MEAGSIKPNSLTFLAILSACCHAGLVDEGRKLF-IRMGGYRLEPNLKHYACMVDLLGKSG 677

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
            L EA DL+  MP+KP   VWG LL AC +H N E+G   AK  F  +P N G Y+L+S 
Sbjct: 678 LLQEAEDLVLAMPIKPDGGVWGTLLSACKVHDNFEMGLRVAKKAFSSDPRNDGYYILMSN 737

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            Y +  +W + E +RD M   G+ K    S ++V
Sbjct: 738 SYGSAEKWDEIEKLRDTMKNYGVEKGVGWSAVDV 771



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 169/596 (28%), Positives = 286/596 (47%), Gaps = 22/596 (3%)

Query: 34  QLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           +LHA   TSG    P F     S   + G      + F       +FL+N++++ +    
Sbjct: 33  RLHALASTSGLSSRPDFAAKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSH-HCA 91

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF---DMDT 146
           +  DS       +R     P  +T P+   A  +LA   +G ++H   +  G    D   
Sbjct: 92  SDFDSALSAHRRMRASGARPSRFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGSV 151

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK- 205
            V + L+ MY   G +  A K+FD M E  VV+W  ++SG  +N    + +     M++ 
Sbjct: 152 AVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRL 211

Query: 206 ---SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
              SG  P+  ++ S L ACG L E+  GR +H       +       +AL  MY KC  
Sbjct: 212 AGDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDM 271

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
             +A ++F  ++E+DVV+WT +I  Y   G  R A+ LFQ M+  G++P+ + +  +LS 
Sbjct: 272 TEDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSG 331

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
             S   + RG++ HA  I++N    V++  +LI MY K  LV ++  VF    ++    W
Sbjct: 332 LGSSANVNRGKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESW 391

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI---LADLQQAMNIHCY 439
           + ++AG    GL  K +EL+RQM     +     + SL+ A +    L  L+   ++HCY
Sbjct: 392 SLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCY 451

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            I+   L    ++  LI +Y +CG+ E A KIF+   ++ +D+V W+ +I+ Y   G   
Sbjct: 452 SIKC-LLDENSITNSLIGMYGRCGNFELACKIFAVAKLR-RDVVTWNALISSYSHVGRSN 509

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
            A+SL+ +M+   V+PN  T  + + AC++   L+ G +L +  ++N    S     T +
Sbjct: 510 DALSLYGQMLTEDVKPNSSTLITVISACANLAALEHG-ELLHSYVKNMGLESDVSISTAL 568

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
           VD+  + G+L  A  +  +M L+     W  ++    +HG       A K   E+E
Sbjct: 569 VDMYTKCGQLGTARGIFDSM-LQRDVVTWNVMISGYGMHGEA---NQALKLFSEME 620


>gi|255583011|ref|XP_002532274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528034|gb|EEF30114.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 631

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 214/634 (33%), Positives = 335/634 (52%), Gaps = 47/634 (7%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           M ER+   +++V+ MY++ G S ++L +FL   R    NP+ Y    VI AC  +    +
Sbjct: 1   MPERNLISWSSVVSMYSKRGFSEEALLVFLDFKRCCNENPNEYILASVISACVQVGG-SI 59

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
              +HG  + +GFD + +VG  L+ +Y   G +  AR VFD + E S V+W T+I+   K
Sbjct: 60  DKQMHGFAVKSGFDRNVYVGTSLVDLYAKGGNIDEARLVFDGLLEKSAVTWTTIITACVK 119

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
              ++ +L +F  M ++ V PD   + SVL AC  L+ ++ G+ IH  V    +  +++ 
Sbjct: 120 RGRSEVSLQLFSQMRETNVVPDGYILSSVLGACSQLEFVQGGKQIHGHVLRRGIEIDVSF 179

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
            N L+D Y K G V  AR +FD M++R+V++WT+MI GY  N   R A+ LF  M   G 
Sbjct: 180 VNVLIDFYTKSGKVQSARKLFDGMADRNVISWTAMIAGYMQNSFDREAVKLFIEMTRLGR 239

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
           RP+     S+L++C SL  L+ GR +HA++IK N+E ++ ++  LIDMYAKC  +  + +
Sbjct: 240 RPDGFVCTSILTSCGSLEALELGRQVHAYSIKGNVESDIFLQNGLIDMYAKCGSLNDARK 299

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           VF   + +  V +NA++ G        +A+ LFR+M   ++ P+  T  SLL A A L+ 
Sbjct: 300 VFDDMTIRNVVSYNALIEGYSTLEQLSEAMNLFREMRHGMLSPSFLTFVSLLGASATLSA 359

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L+    IH  + ++G    +   + LID YSKC  L  A  +F ++   +KDIVVW+ ++
Sbjct: 360 LELGKQIHALITKFGISMEIFAGSALIDFYSKCSCLMDARLVFDKMT--EKDIVVWNAML 417

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGGLLDEGLD 538
            GY      E A+ L+ E+  S  +PN VTF +   A S           H  ++  GLD
Sbjct: 418 FGYTQQLENEEALKLYTELQISEPKPNVVTFAALTTAASNLASLQHGQQFHNHIIKTGLD 477

Query: 539 LFNF----MLENHQTCSR-----------------------------ADHYTCIVDLLGR 565
              F    +++ +  C                                +HY C+V LLGR
Sbjct: 478 SHPFTTNSLIDMYAKCGSLEDARKAFGHVKDGLHYFESMPKFSIKPGTEHYACVVSLLGR 537

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           +G+L EA + I  MP +P   VW +LL AC + GNVELG+ AA+    ++  + G+Y LL
Sbjct: 538 SGKLYEAKEFIEKMPTEPEAVVWRSLLSACRVSGNVELGKYAAEKAISIDSTDSGSYTLL 597

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           S +Y++   W D + VR+ MD  G+ K   HS I
Sbjct: 598 SNIYASKGMWVDVKKVRERMDIAGVVKEAGHSWI 631



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 132/292 (45%), Gaps = 23/292 (7%)

Query: 6   HHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVS--- 61
           H  L  +    + L+   A   ++   KQ+HA I   G  +     S+L+  Y   S   
Sbjct: 337 HGMLSPSFLTFVSLLGASATLSALELGKQIHALITKFGISMEIFAGSALIDFYSKCSCLM 396

Query: 62  NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC 121
           + R++FD+M+E+   ++N ++  Y Q   + ++LK++   L++ E  P+  T+  +  A 
Sbjct: 397 DARLVFDKMTEKDIVVWNAMLFGYTQQLENEEALKLYT-ELQISEPKPNVVTFAALTTAA 455

Query: 122 TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF----------DA 171
           ++LA  + G   H  ++ TG D   F  N LI MY   G ++ ARK F          ++
Sbjct: 456 SNLASLQHGQQFHNHIIKTGLDSHPFTTNSLIDMYAKCGSLEDARKAFGHVKDGLHYFES 515

Query: 172 MWEHSVVS----WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           M + S+      +  ++S   ++    EA    +++ K   EP+     S+L AC     
Sbjct: 516 MPKFSIKPGTEHYACVVSLLGRSGKLYEAK---EFIEKMPTEPEAVVWRSLLSACRVSGN 572

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVV 279
           +E+G+   E  A      +  ++  L ++Y   G   + + V +RM    VV
Sbjct: 573 VELGKYAAE-KAISIDSTDSGSYTLLSNIYASKGMWVDVKKVRERMDIAGVV 623


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 195/497 (39%), Positives = 282/497 (56%), Gaps = 24/497 (4%)

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
           ++ + AL  + +M K  +E D   + SVL AC  +    MG+ IH       L  ++   
Sbjct: 88  SHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVV 147

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTW----------------------TSMINGY 288
           NAL+ MY +CGS+  ARL+FD+MSERDVV+W                      T+MI GY
Sbjct: 148 NALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGY 207

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
               D+     LF  M  E V PN +T+ SL+ +C  +  ++ G+ LHA+ ++      +
Sbjct: 208 IRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSL 267

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            + TAL+DMY KC  ++ +  +F     K  + W A+++          A +LF QM   
Sbjct: 268 ALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDN 327

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            V PN+ T+ SLL   A+   L      H Y+ + G    V + T LID+Y+KCG +  A
Sbjct: 328 GVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGA 387

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            ++FSE    D+DI  W+V++AGYGMHG+GE A+ LF EM   GV+PN++TF  ALHACS
Sbjct: 388 QRLFSEA--IDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACS 445

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           H GL+ EG  LF  M+ +     + +HY C+VDLLGRAG LDEAY +I +MP+ P  A+W
Sbjct: 446 HAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIW 505

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
           GA+L AC IH N  +GE+AA+ L  LEP+N G  VL+S +Y+A  RW D   +R  + + 
Sbjct: 506 GAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDT 565

Query: 649 GLRKAPAHSLIEVRNIL 665
           G++K P  S IEV  ++
Sbjct: 566 GIKKEPGMSSIEVNGLV 582



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 133/409 (32%), Positives = 219/409 (53%), Gaps = 24/409 (5%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           D++  P V+KAC+ ++  ++G  +HG  +  G   D FV N L+ MY   G + +AR +F
Sbjct: 108 DSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLF 167

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW----------------------MLKSG 207
           D M E  VVSW+T+I  Y    Y      +  W                      M++  
Sbjct: 168 DKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEEN 227

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           V P+  +++S++ +CG++  +++G+ +H  +     G ++A   ALVDMY KCG +  AR
Sbjct: 228 VFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSAR 287

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +FD M  +DV+TWT+MI+ YA    +  A  LF  M+  GVRPN LT+ SLLS C+   
Sbjct: 288 AIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNG 347

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L  G+  HA+  KQ +E +VI++TALIDMYAKC  +  + ++F+    +    WN ++A
Sbjct: 348 ALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMA 407

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFL 446
           G   +G   KA++LF +M    V+PND T    L A +    + +   +   +I  +G +
Sbjct: 408 GYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLV 467

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
             VE    ++D+  + G L+ A+K+   +P+   +I +W  ++A   +H
Sbjct: 468 PKVEHYGCMVDLLGRAGLLDEAYKMIESMPVT-PNIAIWGAMLAACKIH 515



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 189/384 (49%), Gaps = 27/384 (7%)

Query: 33  KQLHAFIITSGPLF-THLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ- 87
           K++H F + +G +    + ++L++ Y   G + + R+LFD+MSER    ++T+++ Y   
Sbjct: 129 KEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITL 188

Query: 88  -NGASHDSLKMFLGML-----------------RLGEYN--PDNYTYPIVIKACTDLAWR 127
             G S  S+  +  M+                 R+ E N  P++ T   +I +C  +   
Sbjct: 189 FYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAV 248

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           +LG  LH  +L  GF M   +   L+ MY   GE+++AR +FD+M    V++W  +IS Y
Sbjct: 249 QLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAY 308

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            +      A  +F  M  +GV P+  ++VS+L  C     ++MG+  H  +    +  ++
Sbjct: 309 AQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDV 368

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
               AL+DMY KCG ++ A+ +F    +RD+ TW  M+ GY ++G    AL LF  M+  
Sbjct: 369 ILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETL 428

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ-NLECEVIVETALIDMYAKCNLVKL 366
           GV+PN +T    L ACS    +  G+ L    I    L  +V     ++D+  +  L+  
Sbjct: 429 GVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDE 488

Query: 367 SFQVFARTSKKKTVP-WNAILAGC 389
           ++++         +  W A+LA C
Sbjct: 489 AYKMIESMPVTPNIAIWGAMLAAC 512


>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
 gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
          Length = 766

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 207/624 (33%), Positives = 332/624 (53%), Gaps = 7/624 (1%)

Query: 47  THLRSSLVRAYGHV---SNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR 103
           T L + L+  YG      + R++FD M +R+   +  V+  +AQN    D++ +F  MLR
Sbjct: 82  TILSNHLITMYGRCGAPDSARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSMLR 141

Query: 104 LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163
            G   PD +     I AC++L    LG  +H + +      D  V N L+ MY   G V 
Sbjct: 142 SGTM-PDQFALGSAICACSELGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYSKSGSVG 200

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE-PDCASVVSVLPAC 222
               +F+ + +  ++SW ++I+G  +     +AL +F  M+  GV  P+     SV  AC
Sbjct: 201 DGFALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRAC 260

Query: 223 GYL-KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTW 281
             +   +E G  IH +    +L +N  A  +L DMY +C  ++ AR VF R+   D+V+W
Sbjct: 261 SVVVNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSW 320

Query: 282 TSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
            S+IN ++  G +  A+ LF  M+  G+RP+ +T+ +LL AC     L +GRS+H++ +K
Sbjct: 321 NSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSYLVK 380

Query: 342 QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVEL 401
             L  +VIV  +L+ MYA+C     +  VF  T  +  V WN+IL  CV +       +L
Sbjct: 381 LGLGGDVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVVTWNSILTACVQHQHLEDVFKL 440

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
           F  +   +   +  +LN++L A A L   +    +H Y  + G +    +S GLID Y+K
Sbjct: 441 FSLLHRSMPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKVGLVGDAMLSNGLIDTYAK 500

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
           CGSL+ A+K+F EI    +D+  WS +I GY   G+ + A+ LF  M   GV+PN VTF 
Sbjct: 501 CGSLDDANKLF-EIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVTFV 559

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581
             L ACS  GL+DEG   ++ M   +      +H +C++DLL RAGRL EA   +  MP 
Sbjct: 560 GVLTACSRVGLVDEGCYYYSIMKPEYGIVPTREHCSCVLDLLARAGRLSEAAKFVDQMPF 619

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENV 641
           +P   +W  LL A   H +V++G+ AA+ +  ++P +   YVLL  +Y++   W +   +
Sbjct: 620 EPDIIMWKTLLAASRTHNDVDMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNWNEFARL 679

Query: 642 RDVMDEKGLRKAPAHSLIEVRNIL 665
           +  M   G++K+P  S I+++  L
Sbjct: 680 KKDMRSSGVQKSPGKSWIKLKGEL 703



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 149/497 (29%), Positives = 243/497 (48%), Gaps = 40/497 (8%)

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           +T + N LI MY   G   +AR VFD M + + VSW  +I+ + +N+   +A+ +F  ML
Sbjct: 81  NTILSNHLITMYGRCGAPDSARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSML 140

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
           +SG  PD  ++ S + AC  L ++ +GR +H        G ++   NALV MY K GSV 
Sbjct: 141 RSGTMPDQFALGSAICACSELGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYSKSGSVG 200

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV-RPNSLTIGSLLSAC 323
           +   +F+R+ ++D+++W S+I G A  G   +AL +F+ M  EGV  PN    GS+  AC
Sbjct: 201 DGFALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRAC 260

Query: 324 SSLY-YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           S +   L+ G  +H  ++K  L+       +L DMYA+CN +  + +VF R      V W
Sbjct: 261 SVVVNSLEYGEQIHGVSVKYQLDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVSW 320

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           N+++      GL  +A+ LF +M    + P+  T+ +LL A      L Q  +IH YL++
Sbjct: 321 NSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSYLVK 380

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
            G    V VS  L+ +Y++C    SA  +F E    D+D+V W+ I+     H H E   
Sbjct: 381 LGLGGDVIVSNSLLSMYARCLDFSSAMDVFHE--THDRDVVTWNSILTACVQHQHLEDVF 438

Query: 503 SLFKEMVQSGVQPNEVTFTSALHACS-----------HG-----GLLDEGLDLFNFMLEN 546
            LF  + +S    + ++  + L A +           H      GL+ + + L N +++ 
Sbjct: 439 KLFSLLHRSMPSLDRISLNNVLSASAELGYFEMVKQVHAYAFKVGLVGDAM-LSNGLIDT 497

Query: 547 HQTCSRADHYTCIVDLLGRA----------------GRLDEAYDL---IRTMPLKPTHAV 587
           +  C   D    + +++G                  G   EA DL   +R + +KP H  
Sbjct: 498 YAKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKPNHVT 557

Query: 588 WGALLGACVIHGNVELG 604
           +  +L AC   G V+ G
Sbjct: 558 FVGVLTACSRVGLVDEG 574



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/392 (30%), Positives = 195/392 (49%), Gaps = 19/392 (4%)

Query: 222 CGYLKEIEMGRMIHE--LVAGGR---LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER 276
           C  L+ +  GR++H   L +  R   L  N    N L+ MY +CG+ + AR+VFD M +R
Sbjct: 52  CSRLRSLPQGRLVHRHLLASSARDRFLAHNTILSNHLITMYGRCGAPDSARVVFDGMLDR 111

Query: 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
           + V+W ++I  +A N    +A+GLF  M   G  P+   +GS + ACS L  L  GR +H
Sbjct: 112 NPVSWAAVIAAHAQNSRCADAMGLFSSMLRSGTMPDQFALGSAICACSELGDLGLGRQVH 171

Query: 337 AWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR 396
           A  IK     ++IV+ AL+ MY+K   V   F +F R   K  + W +I+AG    G   
Sbjct: 172 AQAIKWESGSDLIVQNALVTMYSKSGSVGDGFALFERIRDKDLISWGSIIAGLAQQGREM 231

Query: 397 KAVELFRQMLVEVV-EPNDATLNSLLPAYAILAD-LQQAMNIHCYLIRYGFLSVVEVSTG 454
            A+++FR+M+ E V  PN+    S+  A +++ + L+    IH   ++Y           
Sbjct: 232 DALQIFREMIAEGVHHPNEFHFGSVFRACSVVVNSLEYGEQIHGVSVKYQLDRNSYAGCS 291

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           L D+Y++C  L+SA K+F    I+  D+V W+ +I  +   G    A+ LF EM  SG++
Sbjct: 292 LSDMYARCNELDSARKVFYR--IESPDLVSWNSLINAFSAKGLLSEAMVLFSEMRDSGLR 349

Query: 515 PNEVTFTSALHACSHGGLLDEGLDLFNFM----LENHQTCSRADHYTCIVDLLGRAGRLD 570
           P+ +T  + L AC     L +G  + +++    L      S +     ++ +  R     
Sbjct: 350 PDGITVMALLCACVGYDALHQGRSIHSYLVKLGLGGDVIVSNS-----LLSMYARCLDFS 404

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
            A D+      +     W ++L ACV H ++E
Sbjct: 405 SAMDVFHETHDRDV-VTWNSILTACVQHQHLE 435


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 201/608 (33%), Positives = 321/608 (52%), Gaps = 12/608 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +++   LFD M  ++   + +VM  Y +NG    +L MF  M+  G   P+++     
Sbjct: 62  GRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESG-VAPNDFACNAA 120

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + AC DL   + G  +H   +  GF  D ++G+CLI MY   G + AA++VFD M    V
Sbjct: 121 LVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDV 180

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V + +LIS + +N   + A      MLK G++P+  ++ ++L AC  +    +G+ IH  
Sbjct: 181 VGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHGY 236

Query: 238 VAG--GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
           +    G   +++ +  AL+D Y + G    A+ VFD +  ++VV+W SM+  Y  +G + 
Sbjct: 237 LIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLE 296

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            AL +F  M  EGV PN   +  +L AC S+     GR LH   IK +L  ++ V  AL+
Sbjct: 297 EALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GRQLHCSAIKHDLITDIRVSNALL 353

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
            MY +  LV+    +  +      V W   ++    NG   KA+ L  QM  E   PN  
Sbjct: 354 SMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGY 413

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
             +S+L + A +A L Q M  HC  ++ G  S +     LI++YSKCG + SA   F  +
Sbjct: 414 AFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVM 473

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
                D+  W+ +I G+  HG    A+ +F +M  +G++P++ TF   L  C+H G+++E
Sbjct: 474 --HTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEE 531

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           G   F  M++ +       HY C++D+LGR GR DEA  +I  MP +P   +W  LL +C
Sbjct: 532 GELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASC 591

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
            +H N+++G++AA  L EL   +  +YVL+S +Y+    W+DA  VR  MDE G++K   
Sbjct: 592 KLHRNLDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAG 651

Query: 656 HSLIEVRN 663
            S IE+ N
Sbjct: 652 CSWIEINN 659



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 178/377 (47%), Gaps = 18/377 (4%)

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
           VK G + +A  +FDRM  ++VV WTS+++GY  NG    AL +F  M   GV PN     
Sbjct: 59  VKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACN 118

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           + L AC+ L  L+ G  +H+  ++     +  + + LI+MY++C  +  + +VF R    
Sbjct: 119 AALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSP 178

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V + ++++    NG    A E   QML + ++PN+ T+ ++L A   +   Q    IH
Sbjct: 179 DVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQ----IH 234

Query: 438 CYLIRYGFLSVVEV--STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
            YLI+   L    V  ST LID YS+ G  + A  +F  +    K++V W  ++  Y   
Sbjct: 235 GYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHC--KNVVSWCSMMQLYIRD 292

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
           G  E A+ +F +M+  GV PNE   +  L AC   GL   G  L    ++ H   +    
Sbjct: 293 GRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIGL---GRQLHCSAIK-HDLITDIRV 348

Query: 556 YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
              ++ + GR G ++E   ++  +   P    W   + A   +G    GE A   L ++ 
Sbjct: 349 SNALLSMYGRTGLVEELEAMLNKIE-NPDLVSWTTAISANFQNG---FGEKAIALLCQMH 404

Query: 616 PE--NPGNYVLLSKLYS 630
            E   P  Y   S L S
Sbjct: 405 SEGFTPNGYAFSSVLSS 421



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 134/289 (46%), Gaps = 36/289 (12%)

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
           +V++E   ++   K   +  +  +F R  +K  V W ++++G   NG    A+ +F  M+
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
              V PND   N+ L A A L  L+    +H   +R GF     + + LI++YS+CGSL 
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLP 166

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
           +A ++F    +   D+V ++ +I+ +  +G  E A     +M++ G++PNE T T+ L A
Sbjct: 167 AAKEVFDR--MDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTA 224

Query: 527 CS-------HGGLLDE-GLD---------LFNFMLENHQ-----------TCSRADHYTC 558
           C        HG L+ + GL          L +F   N +            C     +  
Sbjct: 225 CPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCS 284

Query: 559 IVDLLGRAGRLDEAYDLIRTM---PLKPTHAVWGALLGACVIHGNVELG 604
           ++ L  R GRL+EA  +   M    + P       +LGAC   G++ LG
Sbjct: 285 MMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGAC---GSIGLG 330


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  368 bits (944), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 225/666 (33%), Positives = 358/666 (53%), Gaps = 19/666 (2%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRI 65
           P T+ L+ KL         +AG + +H  II +G        + LV  Y   G ++    
Sbjct: 12  PHTSTLLKKLTHHSQQRNLVAG-RAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHS 70

Query: 66  LFDEMSERSSFLYNTVMKMYAQNG---ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
           +F+ +  +    +N+++  Y+QNG   +S+  +++F  M R  +  P+ YT   + KA +
Sbjct: 71  IFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREM-RAQDILPNAYTLAGIFKAES 129

Query: 123 DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT 182
            L    +G   H  V+      D +V   L+ MY   G V+   KVF  M E +  +W+T
Sbjct: 130 SLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWST 189

Query: 183 LISGYFKNAYAKEALVVFDWMLKS---GVEPD--CASVVSVLPACGYLKEIEMGRMIHEL 237
           ++SGY      +EA+ VF+  L+    G + D    +V+S L A  Y   + +GR IH +
Sbjct: 190 MVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIY---VGLGRQIHCI 246

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                L   +A  NALV MY KC S+NEA  +FD   +R+ +TW++M+ GY+ NG+   A
Sbjct: 247 TIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEA 306

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + LF  M   G++P+  TI  +L+ACS + YL+ G+ LH++ +K   E  +   TAL+DM
Sbjct: 307 VKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDM 366

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAK   +  + + F    ++    W ++++G V N    +A+ L+R+M    + PND T+
Sbjct: 367 YAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTM 426

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            S+L A + LA L+    +H + I++GF   V + + L  +YSKCGSLE  + +F   P 
Sbjct: 427 ASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTP- 485

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            +KD+V W+ +I+G   +G G+ A+ LF+EM+  G++P++VTF + + ACSH G ++ G 
Sbjct: 486 -NKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGW 544

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             FN M +      + DHY C+VDLL RAG+L EA + I +  +     +W  LL AC  
Sbjct: 545 FYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKN 604

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           HG  ELG  A + L  L       YV LS +Y+A+ R +D E V   M   G+ K    S
Sbjct: 605 HGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCS 664

Query: 658 LIEVRN 663
            IE++N
Sbjct: 665 WIELKN 670



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 121/411 (29%), Positives = 211/411 (51%), Gaps = 23/411 (5%)

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
            ++ + P  ++++  L      + +  GR +H  +        I   N LV+ Y KCG +
Sbjct: 6   FQTELNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKL 65

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNA---LGLFQLMQFEGVRPNSLTIGSLL 320
            +A  +F+ +  +DVV+W S+I GY+ NG + ++   + LF+ M+ + + PN+ T+  + 
Sbjct: 66  AKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIF 125

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
            A SSL     GR  HA  +K +   ++ V+T+L+ MY K  LV+   +VFA   ++ T 
Sbjct: 126 KAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTY 185

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA--TLNSLLPAYAILADLQQAMNIHC 438
            W+ +++G    G   +A+++F   L E  E +D+     ++L + A    +     IHC
Sbjct: 186 TWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHC 245

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
             I+ G L  V +S  L+ +YSKC SL  A K+F      D++ + WS ++ GY  +G  
Sbjct: 246 ITIKNGLLGFVALSNALVTMYSKCESLNEACKMFD--SSGDRNSITWSAMVTGYSQNGES 303

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML----ENHQTCSRAD 554
             AV LF  M  +G++P+E T    L+ACS    L+EG  L +F+L    E H   +   
Sbjct: 304 LEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFAT--- 360

Query: 555 HYTCIVDLLGRAGRLDEA---YDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
             T +VD+  +AG L +A   +D ++   +    A+W +L+   V + + E
Sbjct: 361 --TALVDMYAKAGCLADARKGFDCLQERDV----ALWTSLISGYVQNSDNE 405


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 208/622 (33%), Positives = 332/622 (53%), Gaps = 43/622 (6%)

Query: 80  TVMKMYAQNGASHDSLKMFLGMLRL--GEYNPDNYTYPI--VIKACTDLAWRKLGIALHG 135
           T +K +   G   D+ K  + ++RL     + D   +PI  ++ +CTD+     G  LHG
Sbjct: 140 TSLKEFTSRGNLLDAFKT-VSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHG 198

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
            ++  GF+    +   L+  Y  F  +  A  + +         WN LIS Y +N + ++
Sbjct: 199 HIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQK 258

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           AL  +  M+K G+ PD  +  SVL ACG   ++  G+ +HE +   R+  ++   NAL+ 
Sbjct: 259 ALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALIS 318

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMIN----------------------------- 286
           MY KCG V  AR +FD++ ERD V+W SMI+                             
Sbjct: 319 MYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIII 378

Query: 287 ------GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
                 GY   G+ + AL L   M+  G   +S+ +   L ACS +   K G+ +H++ I
Sbjct: 379 WNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAI 438

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
           +        V+ +LI MY++C  +K ++ +F     K  + WN+I++GC H   + +A  
Sbjct: 439 RSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIISGCCHMDRSEEASF 498

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY-GFLSVVEVSTGLIDIY 459
           L R+ML+  +EPN  T+ S+LP  A +A+LQ     HCY+ R   F   + +   L+D+Y
Sbjct: 499 LLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMY 558

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
           ++ G +  A ++F  +  +DK  + ++ +IAGYGM G G+ A+ LF+EM    ++P+ +T
Sbjct: 559 ARSGKVLEARRVFDMLGERDK--MTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHIT 616

Query: 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
             + L ACSH GL+ +G  LF  M   +      +H+ C+ DL GRAG L++A ++IR M
Sbjct: 617 MIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNM 676

Query: 580 PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAE 639
           P KPT A+W  L+GAC IH N E+GE AA+ L E++PENPG YVL++ +Y+A   W    
Sbjct: 677 PYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLA 736

Query: 640 NVRDVMDEKGLRKAPAHSLIEV 661
            VR  M + G+RKAP  + ++V
Sbjct: 737 KVRXFMRDLGVRKAPGCAWVDV 758



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 135/539 (25%), Positives = 245/539 (45%), Gaps = 46/539 (8%)

Query: 14  HLVIKLVQQYAATKSIAGTKQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDE 69
           H +  L+      KS+A  +QLH  II+ G    P+      +   A+  + +  ++ + 
Sbjct: 175 HPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITEN 234

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
            +    F +N ++  Y +NG    +L  +  M++ G   PDN+TYP V+KAC +      
Sbjct: 235 SNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKG-IRPDNFTYPSVLKACGEELDLGF 293

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS---- 185
           G  +H  +  +       V N LI+MY   G+V  AR +FD + E   VSWN++IS    
Sbjct: 294 GKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYAS 353

Query: 186 -------------------------------GYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
                                          GY +    K AL +   M K G   D  +
Sbjct: 354 MGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVA 413

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           ++  L AC ++ + ++G+ IH        G+     N+L+ MY +C  +  A L+F  M 
Sbjct: 414 LIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLME 473

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
            + +++W S+I+G         A  L + M   G+ PN +TI S+L  C+ +  L+ G+ 
Sbjct: 474 AKSLISWNSIISGCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKE 533

Query: 335 LHAW-TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            H + T +++ +  +++  AL+DMYA+   V  + +VF    ++  + + +++AG    G
Sbjct: 534 FHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQG 593

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVS 452
             + A++LF +M    ++P+  T+ ++L A +    + Q   +   +   YG    +E  
Sbjct: 594 EGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHF 653

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH---GETAVSLFKEM 508
             + D++ + G L  A +I   +P K     +W+ +I    +H +   GE A     EM
Sbjct: 654 ACMTDLFGRAGLLNKAKEIIRNMPYKPTP-AMWATLIGACRIHRNTEIGEWAAEKLLEM 711


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 192/537 (35%), Positives = 306/537 (56%), Gaps = 3/537 (0%)

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           +LG   H  V+  G   D FV   LI MY   GEV +A +V+D M      + N LIS Y
Sbjct: 130 ELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAY 189

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            +N +  +A  VF  +   G  P+  +  ++L  CG +  I+ G+ +H  V   +     
Sbjct: 190 ARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSET 249

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
           A  NAL+ +Y KCG + EA +VF+ + +R++++WT+ ING+  +GD + AL  F +M+  
Sbjct: 250 AVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRES 309

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           G+ PN  T   +L++C  +     GR  H   IK+ +   V V TA+IDMY+    +  +
Sbjct: 310 GIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEA 369

Query: 368 FQVFARTSKKKT-VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
            + F +  +  + V WNA++AG V N    KA+E F +M+ E V  N+ T +++  A + 
Sbjct: 370 EKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSS 429

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
              L   + IH  LI+    S + V++ LI+ Y++CGSLE+A ++F++I   D D+V W+
Sbjct: 430 FPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQI--SDADVVSWN 487

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            II  Y  +G    A+ L ++M++ G +P   TF + L ACSH GL+ EG + F  M+++
Sbjct: 488 SIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQD 547

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
           +       H +C+VD+LGRAG+L+ A D I+ + +KPT ++W  LL AC  + N+++ E 
Sbjct: 548 YSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEY 607

Query: 607 AAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            A+ + +LEP +   YV LS +Y+ V RW DAEN R +M++K + K P  S IEV N
Sbjct: 608 VAEKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEVNN 664



 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 195/559 (34%), Positives = 306/559 (54%), Gaps = 37/559 (6%)

Query: 103  RLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEV 162
            R  + + D Y   I + A     +R  G ALH  ++I G    T+    L++ Y   G++
Sbjct: 797  RTFQSSSDTYAKAIDMYARDRALYR--GRALHAHLVIIGLARLTYFAAKLMSFYTECGQL 854

Query: 163  KAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC 222
              ARK+FD +   ++  W  L     +  + +EAL  F  M K G+ P+   + S+L AC
Sbjct: 855  SNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKAC 914

Query: 223  GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
            G+L +   G  +H ++       +    +AL+ MY KCG V +A  VFD + ++D+V   
Sbjct: 915  GHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMN 974

Query: 283  SMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
            +M++GYA +G V  AL L Q MQ  GV+PN ++  +L++  S +                
Sbjct: 975  AMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQV---------------- 1018

Query: 343  NLECEVIVETALIDMYAKCNLVKLSFQVF-ARTSKKKTVPWNAILAGCVHNGLARKAVEL 401
                               ++V   F++  A   +   V W ++++G V N    +  + 
Sbjct: 1019 ----------------GDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDA 1062

Query: 402  FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
            F++ML +   P+  T++SLLPA   +A+L+    IH Y +  G    V V + L+D+Y+K
Sbjct: 1063 FKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAK 1122

Query: 462  CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
            CG +  A  +F  +P  +++ V W+ +I GY  HG+   A+ LF +M +S  + + +TFT
Sbjct: 1123 CGYISEAKILFYMMP--ERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFT 1180

Query: 522  SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581
            + L+ACSH G+++ G  LF  M E ++   R +HY C+VDLLGRAG+L EAYDLI+ MP+
Sbjct: 1181 AVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPV 1240

Query: 582  KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENV 641
            +P   VWGALLGAC  HGN+EL EVAA+ LFELEPE+PG+ +LLS LY+   RW +A  +
Sbjct: 1241 EPDKFVWGALLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYADAGRWGNAAKM 1300

Query: 642  RDVMDEKGLRKAPAHSLIE 660
            + +M ++   K P  S IE
Sbjct: 1301 KKMMKQRKFGKFPGCSWIE 1319



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 129/474 (27%), Positives = 242/474 (51%), Gaps = 9/474 (1%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           +SL+  Y   G V +   ++D+M+   +   N ++  YA+NG    + ++F+ +  +G  
Sbjct: 152 TSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGT- 210

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            P++YTY  ++  C  ++  + G  LH  V+   +  +T VGN L+ +Y   G ++ A  
Sbjct: 211 RPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEI 270

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VF+++ + +++SW   I+G++++   K+AL  F  M +SG+EP+  +   VL +CG +K+
Sbjct: 271 VFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKD 330

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-RDVVTWTSMIN 286
              GRM H  V    +   +    A++DMY   G ++EA   F +M      V+W ++I 
Sbjct: 331 FIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIA 390

Query: 287 GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346
           GY LN  +  A+  F  M  E V  N  T  ++  ACSS   L     +H+  IK N+E 
Sbjct: 391 GYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVES 450

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
            + V ++LI+ Y +C  ++ + QVF + S    V WN+I+     NG   KA+ L R+M+
Sbjct: 451 NLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMI 510

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSL 465
            E  +P   T  ++L A +    +Q+       +++ Y         + ++DI  + G L
Sbjct: 511 EEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQL 570

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
           E+A     ++ +K     +W  ++A    + + + A  + ++++   ++PN+ T
Sbjct: 571 ENALDFIKKLTMK-PTASIWRPLLAACRYNSNLQMAEYVAEKILD--LEPNDAT 621



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 136/510 (26%), Positives = 248/510 (48%), Gaps = 48/510 (9%)

Query: 2    NGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY--- 57
            N  +H T   ++    K +  YA  +++   + LHA ++  G    T+  + L+  Y   
Sbjct: 792  NISTHRTFQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTEC 851

Query: 58   GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
            G +SN R LFD++   +   +  +    A+ G   ++L  F  M + G   P+ +  P +
Sbjct: 852  GQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEG-LRPNQFVLPSI 910

Query: 118  IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
            +KAC  L+ R+ G  +H  +L   F+ D ++ + LI MY   G V+ A +VFD + +  +
Sbjct: 911  LKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDL 970

Query: 178  VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
            V  N ++SGY ++ +  EAL +   M ++GV+P                           
Sbjct: 971  VVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKP--------------------------- 1003

Query: 238  VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS----ERDVVTWTSMINGYALNGD 293
                    N+ +WN L+  + + G  +    VF  M+    E DVV+WTS+I+G+  N  
Sbjct: 1004 --------NVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFH 1055

Query: 294  VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
                   F+ M  +G  P+S+TI SLL AC+++  L+ G+ +H + +   +E +V V +A
Sbjct: 1056 NHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSA 1115

Query: 354  LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
            L+DMYAKC  +  +  +F    ++ TV WN+++ G  ++G   +A+ELF QM     + +
Sbjct: 1116 LVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLD 1175

Query: 414  DATLNSLLPA--YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
              T  ++L A  +A + +L +++       +Y     +E    ++D+  + G L  A+ +
Sbjct: 1176 HLTFTAVLNACSHAGMVELGESL-FXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDL 1234

Query: 472  FSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
               +P+ + D  VW  ++     HG+ E A
Sbjct: 1235 IKAMPV-EPDKFVWGALLGACRNHGNIELA 1263



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 128/444 (28%), Positives = 209/444 (47%), Gaps = 37/444 (8%)

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           P    V S L  CG    +E+GR  H  V    LG +     +L+DMY KCG V+ A  V
Sbjct: 111 PHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRV 170

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           +D+M+  D  T   +I+ YA NG    A  +F  +   G RPN  T  ++L+ C ++  +
Sbjct: 171 YDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAI 230

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           + G+ LHA  +K     E  V  AL+ +Y+KC +++ +  VF    ++  + W A + G 
Sbjct: 231 QEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGF 290

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
             +G  +KA++ F  M    +EPN+ T + +L +   + D       H  +I+ G  S V
Sbjct: 291 YQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGV 350

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            V T +ID+YS  G ++ A K F ++  +    V W+ +IAGY ++   E A+  F  MV
Sbjct: 351 FVGTAIIDMYSGLGEMDEAEKQFKQMG-RAASNVSWNALIAGYVLNEKIEKAMEAFCRMV 409

Query: 510 QSGVQPNEVTFTSALHACS-----------HGGLL----DEGLDLFNFMLENHQTC---- 550
           +  V  NE T+++   ACS           H  L+    +  L + + ++E +  C    
Sbjct: 410 KEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLE 469

Query: 551 ---------SRAD--HYTCIVDLLGRAGRLDEAYDLIRTM---PLKPTHAVWGALLGACV 596
                    S AD   +  I+    + G   +A  L+R M     KPT   +  +L AC 
Sbjct: 470 NAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACS 529

Query: 597 IHGNVELGEVAAKWL---FELEPE 617
             G V+ G+   K +   + ++PE
Sbjct: 530 HSGLVQEGQEFFKSMVQDYSIQPE 553



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 197/403 (48%), Gaps = 26/403 (6%)

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           P C    S+LP C     +++ + I+ +++     K   +   +V  +V    +N A ++
Sbjct: 13  PTC----SLLPGC---IAVDLQKNINPIISASGPYKGCMSKGNVVGGWV---DLNNACIL 62

Query: 270 FDRMSERDVVTWT-SMINGYALNGD--VRNALGLFQL-----MQFEGVRPNSLTIGSLLS 321
           F++  +R  V+ T S  +G   + +  V+ A G F       ++F G  P+   + S LS
Sbjct: 63  FEKTPKRIGVSITESHRSGCTDDPEEGVKEA-GFFTRNETPHVEFGGGFPHRQYVFSALS 121

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
            C     ++ GR  H + +K  L  +  V T+LIDMYAKC  V  + +V+ + +      
Sbjct: 122 FCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAAT 181

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
            N +++    NG   +A ++F Q+      PN  T +++L     ++ +Q+   +H +++
Sbjct: 182 CNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVV 241

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           +  +LS   V   L+ +YSKCG +E A  +F    ++ ++I+ W+  I G+  HG  + A
Sbjct: 242 KMQYLSETAVGNALLTLYSKCGMMEEAEIVFES--LRQRNIISWTASINGFYQHGDFKKA 299

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD--LFNFMLENHQTCSRADHYTCI 559
           +  F  M +SG++PNE TF+  L +C   G + + +D  +F+  +      S     T I
Sbjct: 300 LKQFSMMRESGIEPNEFTFSIVLASC---GCVKDFIDGRMFHTQVIKKGMASGVFVGTAI 356

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           +D+    G +DEA    + M    ++  W AL+   V++  +E
Sbjct: 357 IDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIE 399


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  367 bits (943), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 191/467 (40%), Positives = 285/467 (61%), Gaps = 4/467 (0%)

Query: 197 LVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
           L V D +    +EP+      +L  C YL++++ GR IH  +       ++   N +++M
Sbjct: 90  LYVLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNM 149

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y KCGS+ EA+ +FD+M  +D+V+WT +I+GY+ +G    AL LF  M   G +PN  T+
Sbjct: 150 YAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTL 209

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
            SLL A  +      GR LHA+++K   +  V V ++L+DMYA+   ++ +  +F   + 
Sbjct: 210 SSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAA 269

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           K  V WNA++AG    G     + LF QML +  EP   T +S+L A A    L+Q   +
Sbjct: 270 KNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWV 328

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H ++I+ G   +  +   LID+Y+K GS++ A K+F  +    +DIV W+ II+GY  HG
Sbjct: 329 HAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLV--KQDIVSWNSIISGYAQHG 386

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
            G  A+ LF++M+++ VQPNE+TF S L ACSH GLLDEG   F  M + H+  ++  H+
Sbjct: 387 LGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELM-KKHKIEAQVAHH 445

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
             +VDLLGRAGRL+EA   I  MP+KPT AVWGALLGAC +H N++LG  AA+ +FEL+P
Sbjct: 446 VTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDP 505

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            + G +VLLS +Y++  R  DA  VR +M E G++K PA S +E+ N
Sbjct: 506 HDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIEN 552



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/404 (30%), Positives = 211/404 (52%), Gaps = 2/404 (0%)

Query: 99  LGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMN 158
           L ++  G   P+   Y  ++  CT L   K G A+H  +  + F+ D  + N ++ MY  
Sbjct: 93  LDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAK 152

Query: 159 FGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSV 218
            G ++ A+ +FD M    +VSW  LISGY ++  A EAL +F  ML  G +P+  ++ S+
Sbjct: 153 CGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSL 212

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
           L A G       GR +H          N+   ++L+DMY +   + EA+++F+ ++ ++V
Sbjct: 213 LKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNV 272

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           V+W ++I G+A  G+  + + LF  M  +G  P   T  S+L AC+S   L++G+ +HA 
Sbjct: 273 VSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAH 331

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
            IK   +    +   LIDMYAK   +K + +VF R  K+  V WN+I++G   +GL  +A
Sbjct: 332 VIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEA 391

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
           ++LF QML   V+PN+ T  S+L A +    L +       + ++   + V     ++D+
Sbjct: 392 LQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDL 451

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
             + G L  A+K   E+PIK     VW  ++    MH + +  V
Sbjct: 452 LGRAGRLNEANKFIEEMPIK-PTAAVWGALLGACRMHKNMDLGV 494



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 177/335 (52%), Gaps = 7/335 (2%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +   + LFD+M  +    +  ++  Y+Q+G + ++L +F  ML LG + P+ +T   +
Sbjct: 154 GSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLG-FQPNEFTLSSL 212

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +KA         G  LH   L  G+DM+  VG+ L+ MY  +  ++ A+ +F+++   +V
Sbjct: 213 LKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNV 272

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSWN LI+G+ +    +  + +F  ML+ G EP   +  SVL AC     +E G+ +H  
Sbjct: 273 VSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAH 331

Query: 238 V--AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
           V  +GG+    I   N L+DMY K GS+ +A+ VF R+ ++D+V+W S+I+GYA +G   
Sbjct: 332 VIKSGGQPIAYIG--NTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGA 389

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            AL LF+ M    V+PN +T  S+L+ACS    L  G+       K  +E +V     ++
Sbjct: 390 EALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVV 449

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVP-WNAILAGC 389
           D+  +   +  + +       K T   W A+L  C
Sbjct: 450 DLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGAC 484



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 157/294 (53%), Gaps = 9/294 (3%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +QLHAF +  G  +  H+ SSL+  Y    H+   +++F+ ++ ++   +N ++  +A+ 
Sbjct: 226 RQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARK 285

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G     +++F  MLR G + P ++TY  V+ AC      + G  +H  V+ +G     ++
Sbjct: 286 GEGEHVMRLFXQMLRQG-FEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQPIAYI 343

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           GN LI MY   G +K A+KVF  + +  +VSWN++ISGY ++    EAL +F+ MLK+ V
Sbjct: 344 GNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKV 403

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +P+  + +SVL AC +   ++ G+   EL+   ++   +A    +VD+  + G +NEA  
Sbjct: 404 QPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANK 463

Query: 269 VFDRMSERDVVT-WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
             + M  +     W +++    ++ ++   LG++   Q   + P+      LLS
Sbjct: 464 FIEEMPIKPTAAVWGALLGACRMHKNMD--LGVYAAEQIFELDPHDSGPHVLLS 515



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 64/117 (54%), Gaps = 7/117 (5%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG--PLFTHLRSSLVRAY---GHVSNVRI 65
           + TH     V   A++ S+   K +HA +I SG  P+  ++ ++L+  Y   G + + + 
Sbjct: 304 EPTHFTYSSVLACASSGSLEQGKWVHAHVIKSGGQPI-AYIGNTLIDMYAKSGSIKDAKK 362

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
           +F  + ++    +N+++  YAQ+G   ++L++F  ML+  +  P+  T+  V+ AC+
Sbjct: 363 VFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLK-AKVQPNEITFLSVLTACS 418


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  367 bits (943), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 213/685 (31%), Positives = 349/685 (50%), Gaps = 80/685 (11%)

Query: 58   GHVSNVRILFDEMSERSSFLYNTVMKMYAQ------------------------------ 87
            G + + R+LFD M ER   L+N ++K Y Q                              
Sbjct: 776  GRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLIL 835

Query: 88   NGASH----------DSLKMFLGMLRLGEYNPDNY------------------------- 112
            NG S           D ++ +   L L + NPD +                         
Sbjct: 836  NGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNM 895

Query: 113  ----------TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEV 162
                      T  +V+ A       +LG  +HG  + +G D D  V N L+ MY   G  
Sbjct: 896  NGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCA 955

Query: 163  KAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC 222
              AR+VF+ M    ++SWN++IS   +++  +E++ +F  +L  G++PD  ++ SVL AC
Sbjct: 956  YFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRAC 1015

Query: 223  GYLKE-IEMGRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT 280
              L + + + R IH   +  G +  +  A   L+D+Y K G + EA  +F    + D+  
Sbjct: 1016 SSLIDGLNISRQIHVHALKTGNIADSFVA-TTLIDVYSKSGKMEEAEFLFQNKDDLDLAC 1074

Query: 281  WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
            W +M+ GY +  D + AL LF L+   G + + +T+ +   AC  L  L +G+ +HA  I
Sbjct: 1075 WNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAI 1134

Query: 341  KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
            K   + ++ V + ++DMY KC  +  +  VF   S    V W ++++GCV NG   +A+ 
Sbjct: 1135 KAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALR 1194

Query: 401  LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
            ++ +M    V P++ T  +L+ A + +  L+Q   +H  +I+   +S   V T L+D+Y+
Sbjct: 1195 IYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYA 1254

Query: 461  KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
            KCG++E A+++F ++ +++  I +W+ ++ G   HG+ E AV+LFK M   G++P+ V+F
Sbjct: 1255 KCGNIEDAYRLFKKMNVRN--IALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSF 1312

Query: 521  TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
               L ACSH GL  E  +  + M  ++      +HY+C+VD LGRAG + EA  +I TMP
Sbjct: 1313 IGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMP 1372

Query: 581  LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAEN 640
             K + ++  ALLGAC I G+VE G+  A  LF LEP +   YVLLS +Y+A  RW D  +
Sbjct: 1373 FKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTD 1432

Query: 641  VRDVMDEKGLRKAPAHSLIEVRNIL 665
             R +M  K ++K P  S I+V+N+L
Sbjct: 1433 ARKMMKRKNVKKDPGFSWIDVKNML 1457



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 136/461 (29%), Positives = 234/461 (50%), Gaps = 7/461 (1%)

Query: 24   AATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYN 79
            A T  +   KQ+H   + SG      + +SLV  Y   G     R +F++M       +N
Sbjct: 915  AGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWN 974

Query: 80   TVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL-AWRKLGIALHGRVL 138
            +++   AQ+    +S+ +F+ +L  G   PD++T   V++AC+ L     +   +H   L
Sbjct: 975  SMISSCAQSSLEEESVNLFIDLLHEG-LKPDHFTLASVLRACSSLIDGLNISRQIHVHAL 1033

Query: 139  ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
             TG   D+FV   LI +Y   G+++ A  +F    +  +  WN ++ GY      K+AL 
Sbjct: 1034 KTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALE 1093

Query: 199  VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
            +F  + KSG + D  ++ +   ACG L  ++ G+ IH          ++   + ++DMY+
Sbjct: 1094 LFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYI 1153

Query: 259  KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
            KCG +  A +VF+ +S  D V WTSMI+G   NG+   AL ++  M+   V P+  T  +
Sbjct: 1154 KCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFAT 1213

Query: 319  LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
            L+ A S +  L++GR LHA  IK +   +  V T+L+DMYAKC  ++ ++++F + + + 
Sbjct: 1214 LIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRN 1273

Query: 379  TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN-IH 437
               WNA+L G   +G A +AV LF+ M    +EP+  +   +L A +      +A   +H
Sbjct: 1274 IALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLH 1333

Query: 438  CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
                 YG    +E  + L+D   + G ++ A K+   +P K
Sbjct: 1334 SMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFK 1374



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 157/596 (26%), Positives = 278/596 (46%), Gaps = 48/596 (8%)

Query: 19   LVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAY---GHVSNVRILFDEMSERS 74
            L++   +T ++   K  HA I+ SG    H L ++L+  Y   G +S+ R +FD   ER 
Sbjct: 627  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 75   SFLYNTVMKMYA-----QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA--WR 127
               +N ++  YA      +G + + L +F  +LR    +    T   V+K C +    W 
Sbjct: 687  LVTWNAILGAYAASVDSNDGNAQEGLHLFR-LLRASLGSTTRMTLAPVLKLCLNSGCLWA 745

Query: 128  KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
              G+  HG  +  G + D FV   L+ +Y   G ++ AR +FD M E  VV WN ++ GY
Sbjct: 746  AEGV--HGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGY 803

Query: 188  FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
             +    KEA  +F    +SG+ PD  SV  +L     +   E          G  L   +
Sbjct: 804  VQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDE----------GKWLADQV 853

Query: 248  AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
             A+ A + +                    DV  W   ++     GD   A+  F  M   
Sbjct: 854  QAYAAKLSL---------------SDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGL 898

Query: 308  GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
             +  +++T+  +L+A +    L+ G+ +H   +K  L+ +V V  +L++MY+K      +
Sbjct: 899  NIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFA 958

Query: 368  FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
             +VF        + WN++++ C  + L  ++V LF  +L E ++P+  TL S+L A + L
Sbjct: 959  REVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSL 1018

Query: 428  AD-LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
             D L  +  IH + ++ G ++   V+T LID+YSK G +E A  +F      D D+  W+
Sbjct: 1019 IDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQN--KDDLDLACWN 1076

Query: 487  VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
             ++ GY +   G+ A+ LF  + +SG + +++T  +A  AC    LLD+G  +    +  
Sbjct: 1077 AMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAI-- 1134

Query: 547  HQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             +    +D +  + I+D+  + G +  A  ++      P    W +++  CV +GN
Sbjct: 1135 -KAGFDSDLHVNSGILDMYIKCGDMVNA-GIVFNYISAPDDVAWTSMISGCVDNGN 1188


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  367 bits (943), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 209/614 (34%), Positives = 333/614 (54%), Gaps = 46/614 (7%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V++   LFD MS  +   +  +M   AQ+GA  D+L++F  M R      D      V
Sbjct: 191 GSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSR-SAIRVDPVAVSSV 249

Query: 118 IKACTDLAWR--------KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           + AC              +L  ++H  V+  GFD D  VGN LI MY    ++  A KVF
Sbjct: 250 LGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVF 309

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           ++M   S+VSWN L++GY +    + AL V D M +SG EP+  +  ++L +C       
Sbjct: 310 ESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASC------- 362

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
                                       +K   V  AR +FD++S+  V TW ++++GY 
Sbjct: 363 ----------------------------IKARDVPSARAMFDKISKPSVTTWNTLLSGYG 394

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
                ++ + LF+ MQ + V+P+  T+  +LS CS L  L+ G+ +H+ ++K  L  ++ 
Sbjct: 395 QEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMF 454

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           V + LIDMY+KC  V ++  +F   +++  V WN++++G   + L  +A + F+QM    
Sbjct: 455 VASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENG 514

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           + P +++  S++ + A L+ + Q   IH  +++ G+   V V + LID+Y+KCG+++ A 
Sbjct: 515 MFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDAR 574

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
             F+ + +K+  IV W+ +I GY  +G GE AV LF+ M+ +  +P+ VTF + L  CSH
Sbjct: 575 LFFNCMIVKN--IVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSH 632

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
            GL+DE +  FN M  N+      +HYTC++D LGRAGR  E   +I  MP K    +W 
Sbjct: 633 SGLVDEAIAYFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDDAILWE 692

Query: 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
            LL ACV+H N ELGE AAK LF L+P+NP  YVLLS +Y+ + R  DA  VR +M  +G
Sbjct: 693 VLLAACVVHHNAELGEFAAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRG 752

Query: 650 LRKAPAHSLIEVRN 663
           + K   +S +  ++
Sbjct: 753 VVKGRGYSWVNHKD 766



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 136/536 (25%), Positives = 234/536 (43%), Gaps = 95/536 (17%)

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
           +FL N ++++Y+ +G    +L+ F  + R     P+ Y+Y                    
Sbjct: 45  TFLLNRLVELYSLSGLPCHALRAFRALPR-----PNVYSY-------------------- 79

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
                          N  I+     G++ AAR +   M + + VSWNT+I+   ++    
Sbjct: 80  ---------------NAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSDSPG 124

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           EAL ++  ML+ G+ P   ++ SVL ACG +  ++ GR  H L     L  N    N L+
Sbjct: 125 EALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLL 184

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
            MY KCGSV +A  +FD MS  + V++T+M+ G A +G V +AL LF  M    +R + +
Sbjct: 185 GMYTKCGSVADAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPV 244

Query: 315 TIGSLLSACSSL----YYLKR----GRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
            + S+L AC+      Y + R     +S+HA  +++  + +  V  +LIDMYAK   +  
Sbjct: 245 AVSSVLGACAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDE 304

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           + +VF   S    V WN ++ G    G   +A+E+   M     EPN+ T +++L +   
Sbjct: 305 AMKVFESMSSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLAS--- 361

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
                      C   R                      + SA  +F +  I    +  W+
Sbjct: 362 -----------CIKAR---------------------DVPSARAMFDK--ISKPSVTTWN 387

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN----F 542
            +++GYG     +  + LF+ M    VQP+  T    L  CS  G+L+ G  + +     
Sbjct: 388 TLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKL 447

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
           +L N    +       ++D+  + G++  A  +I  M  +     W +++    IH
Sbjct: 448 LLHNDMFVASG-----LIDMYSKCGQVGIA-QIIFNMMTERDVVCWNSMISGLAIH 497



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 180/371 (48%), Gaps = 18/371 (4%)

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           N+ ++NA +    + G +  AR +  RM +R+ V+W ++I   A +     AL +++ M 
Sbjct: 75  NVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGML 134

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            EG+ P + T+ S+LSAC ++  L  GR  H   +K  L+    VE  L+ MY KC  V 
Sbjct: 135 QEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVA 194

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA-- 423
            + ++F   S    V + A++ G   +G    A+ LF +M    +  +   ++S+L A  
Sbjct: 195 DAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACA 254

Query: 424 ------YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
                 Y +   ++ A +IH  ++R GF S   V   LID+Y+K   ++ A K+F    +
Sbjct: 255 QACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFES--M 312

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
               IV W++++ GYG  G  E A+ +   M +SG +PNEVT+++ L +C     +    
Sbjct: 313 SSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASCIKARDVPSAR 372

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP---LKPTHAVWGALLGA 594
            +F+ + +   T      +  ++   G+     +  +L R M    ++P       +L  
Sbjct: 373 AMFDKISKPSVTT-----WNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILST 427

Query: 595 CVIHGNVELGE 605
           C   G +ELG+
Sbjct: 428 CSRLGILELGK 438



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 115/274 (41%), Gaps = 40/274 (14%)

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVF-------------------------------A 372
           L  +  +   L+++Y+   L   + + F                                
Sbjct: 41  LAADTFLLNRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAARDLLG 100

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           R   +  V WN ++A    +    +A+E++R ML E + P + TL S+L A   +A L  
Sbjct: 101 RMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAVAALDD 160

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
               H   ++ G      V  GL+ +Y+KCGS+  A ++F  +   ++  V ++ ++ G 
Sbjct: 161 GRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNE--VSFTAMMGGL 218

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN-HQTCS 551
              G  + A+ LF  M +S ++ + V  +S L AC+     D  +     + ++ H    
Sbjct: 219 AQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYNVARAIRLAQSIHALVV 278

Query: 552 R----ADHY--TCIVDLLGRAGRLDEAYDLIRTM 579
           R    +D +    ++D+  +  ++DEA  +  +M
Sbjct: 279 RKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESM 312


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  367 bits (943), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 198/607 (32%), Positives = 339/607 (55%), Gaps = 4/607 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G++S  R LFD M +R++  +  ++  YAQN    ++  +F+ M R G  +PD+ +   +
Sbjct: 146 GNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHG-IDPDHVSLATL 204

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +   T+         +H  V+  G+D    V N L+  Y     +  A ++F+ + E   
Sbjct: 205 LSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDS 264

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V++N L++GY K  + +EA+ +F  M + G  P   +  ++L A   L +IE G+ +H  
Sbjct: 265 VTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGF 324

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V       N+   NAL+D Y K   V EA  +F  M E D +++  ++  YA NG V+ +
Sbjct: 325 VVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKES 384

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L LF+ +QF G    +    +LLS  +    L  GR +H+ TI  +   E++V  +L+DM
Sbjct: 385 LELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDM 444

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAKC     + ++F+  + + +VPW A+++  V  GL    ++LF +M    +  + AT 
Sbjct: 445 YAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATY 504

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            S++ A A LA L     +H ++I  G++S V   + L+D+Y+KCGS++ A ++F E+P+
Sbjct: 505 ASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPV 564

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
           ++   V W+ +I+ Y  +G G+  + LF+EMV+SG+QP+ V+  S L ACSH GL++EGL
Sbjct: 565 RNS--VSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGL 622

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             F+ M   ++   + +HY   +D+L R GR DEA  L+  MP +P   +W ++L +C I
Sbjct: 623 QYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGI 682

Query: 598 HGNVELGEVAAKWLFELEP-ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           H N EL + AA  LF ++   +   YV +S +Y+A   W +   V+  M E+G++K PA+
Sbjct: 683 HKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAY 742

Query: 657 SLIEVRN 663
           S +E+++
Sbjct: 743 SWVEIKH 749



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/495 (27%), Positives = 245/495 (49%), Gaps = 10/495 (2%)

Query: 107 YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD-MDTFVGNCLIAMYMNFGEVKAA 165
           +NP+ Y    ++K+     + + G     R L       + F  N +I  Y+  G +  A
Sbjct: 97  FNPNTYRSNFLVKS-----FLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEA 151

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           R +FD+M++ + V+W  LI GY +N   +EA  +F  M + G++PD  S+ ++L      
Sbjct: 152 RTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEF 211

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
             +   R +H  V        +   N+L+D Y K  S+  A  +F+ + ERD VT+ +++
Sbjct: 212 DSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALL 271

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
            GY+  G  R A+ LF  MQ  G RP   T  ++L+A   L  ++ G+ +H + +K N  
Sbjct: 272 TGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFV 331

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
             V V  AL+D Y+K + V  + ++F    +   + +N ++     NG  ++++ELF+++
Sbjct: 332 WNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKEL 391

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
                +  +    +LL   AI  +L     IH   I    +S + V   L+D+Y+KCG  
Sbjct: 392 QFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEF 451

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
             A++IFS++ I+    V W+ +I+ Y   G  E  + LF EM ++ +  +  T+ S + 
Sbjct: 452 GEANRIFSDLAIQSS--VPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVR 509

Query: 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           AC+    L  G  L + ++ +    S     + +VD+  + G + +A  + + MP++ + 
Sbjct: 510 ACASLASLTLGKQLHSHIIGSGYI-SNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNS- 567

Query: 586 AVWGALLGACVIHGN 600
             W AL+ A   +G+
Sbjct: 568 VSWNALISAYAQNGD 582



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 189/376 (50%), Gaps = 7/376 (1%)

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
           KNI + N ++  Y+K G+++EAR +FD M +R  VTWT +I GYA N   R A GLF  M
Sbjct: 130 KNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEM 189

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
              G+ P+ +++ +LLS  +    +   R +H+  IK   +  ++V  +L+D Y K   +
Sbjct: 190 GRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSL 249

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
            L+FQ+F    ++ +V +NA+L G    G  R+A+ LF +M      P + T  ++L A 
Sbjct: 250 GLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAG 309

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
             L D++    +H ++++  F+  V V+  L+D YSK   +  A K+F E+P  + D + 
Sbjct: 310 IQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMP--EVDGIS 367

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           ++V++  Y  +G  + ++ LFKE+  +G       F + L   +    LD G  + +  +
Sbjct: 368 YNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTI 427

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
                 S       +VD+  + G   EA  +   + ++ +   W A++ + V  G   L 
Sbjct: 428 VT-DAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSS-VPWTAMISSYVQKG---LH 482

Query: 605 EVAAKWLFELEPENPG 620
           E   K   E++    G
Sbjct: 483 EDGLKLFVEMQRAKIG 498


>gi|242046440|ref|XP_002461091.1| hypothetical protein SORBIDRAFT_02g040530 [Sorghum bicolor]
 gi|241924468|gb|EER97612.1| hypothetical protein SORBIDRAFT_02g040530 [Sorghum bicolor]
          Length = 695

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 217/657 (33%), Positives = 351/657 (53%), Gaps = 24/657 (3%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSN------VRILFDEMS 71
           L+ +  +  ++   ++LHA ++  G    T L + LVRAY  + +      VR+ FD M 
Sbjct: 47  LLLRLQSGPALTEVRRLHAALLVRGYRTSTVLAAQLVRAYARLRDGGLGHAVRV-FDGML 105

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
            R+SF +N V+K     G   ++L+ +  M+  G    D +TYP V+KAC       LG+
Sbjct: 106 TRNSFAWNAVIKGLVDAGRFSEALQWYWDMVGDGSVVADRFTYPPVLKACA-----ALGV 160

Query: 132 ALHGRVLITGFDMD---------TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT 182
              GR +    + D          FV   L+ M+   G +  AR VF++M    + +W  
Sbjct: 161 VEQGRKVQENVEADIARGIAKCNVFVQCALVDMFAKCGCLGEARNVFESMEVRDLAAWTA 220

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           +I G        E + +   M   G  PD   + +V+PACG +KE+  G  +H  V    
Sbjct: 221 MIGGTVHGGDWLEVMTLLKRMKSEGFRPDSMILATVIPACGKVKELRTGTALHGCVVKCG 280

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
           +G +    NALVDMY KC  ++ A  +F  +  +DV++W+++I G++ N     ++ LF 
Sbjct: 281 VGVDTCVLNALVDMYCKCARLDFAASLFWSIDHKDVISWSTIIAGHSQNRRYHVSVSLFS 340

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            M   GV+PNS T+ S+L + S L   + G+ +H ++++  LE    + +ALID Y++  
Sbjct: 341 EMVASGVKPNSTTLASILPSLSELRLFRYGKEIHCFSLRNGLEHSEFLASALIDFYSRQG 400

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            +K +  VF  T K   V  N+++ G V N  +  A+ L R +L E + P+  T+ S+LP
Sbjct: 401 SIKEAEIVFEFTPKNDLVVSNSMIGGYVVNEDSESALRLLRALLKEGLRPDRVTVVSVLP 460

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
                + L Q   +H Y IR+   S   VS  L D+Y KCG LE A +IF  + + +++ 
Sbjct: 461 LCNQHSRLLQGKELHAYAIRHNISSCCSVSNALTDMYCKCGCLELAFEIF--LLMTERNT 518

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
           V ++ +I+  G HGH E A  LF  M + GV P++VTF + L  CSH GL+D+GL  ++ 
Sbjct: 519 VTYNTLISSLGKHGHAEQAFFLFDLMKRDGVSPDKVTFVALLSCCSHEGLIDKGLCFYDS 578

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           ML ++      +HY+CIVDL  R+GRLD A+  I  +   P   V G LL AC  H  ++
Sbjct: 579 MLRDYNISPDKEHYSCIVDLYSRSGRLDAAWSFIANLQEVPEIDVLGCLLSACREHNRMD 638

Query: 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           + E+ A+ +FE  P +PG ++LLS +Y++   W +   +R +++E+ L+K   +SLI
Sbjct: 639 IAELVAERIFEQNPNDPGYHILLSNIYASAGMWSEVTRIRTMIEERSLKKRTGNSLI 695


>gi|359474850|ref|XP_002277741.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
 gi|297744624|emb|CBI37886.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 221/620 (35%), Positives = 346/620 (55%), Gaps = 5/620 (0%)

Query: 42  SGPL-FTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLG 100
           S P+ ++ L S  +++ G + N   LF+E+ +R    ++ ++  Y +NG    S+++F  
Sbjct: 24  SDPINYSKLLSCYLKS-GDIINAGKLFEEIPKRDVVSWSIMIHGYNRNGFRRKSMELF-S 81

Query: 101 MLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG 160
            +R+    P ++T   V+ +   L    LG  +HG +L  G D D  V   L+  Y   G
Sbjct: 82  QMRISSLVPTSFTMVGVLVSIAGLGDPVLGQCVHGLILKYGLDSDFRVVTALLNAYAKCG 141

Query: 161 EVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLP 220
            V  + +VF+ +    +VS + ++SG+  N   +EA+V+F+   K G+ P+ A+V++++ 
Sbjct: 142 NVVDSYRVFEQLENPGLVSCSAIVSGFVYNELFEEAVVLFNQFRKLGMVPNAATVLTLIR 201

Query: 221 ACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT 280
           AC  L+   +   IH +V    L  ++A  N+++DMY     ++ A  VF+ M  RDV++
Sbjct: 202 ACVALESRRLCESIHGMVVKLSLVLDVAVNNSVLDMYSSMLDLDAATRVFEGMECRDVIS 261

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           WT+MIN         +AL LF+ M+  G+  + + + +L+SAC+ L  LKRGR +H   I
Sbjct: 262 WTTMINLLVCLEYASDALMLFRQMRNTGICNDVVVVMNLISACAILGDLKRGREIHTQAI 321

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
                 E+ +  ++I MY+KC  +  S  VF +T+ K  V W A++ GCV NG  R+A++
Sbjct: 322 VCGFGSELPLTNSIIAMYSKCGDLDSSRTVFDQTTGKSLVSWTAMILGCVQNGYPREALK 381

Query: 401 LFRQMLVEVVEPNDAT-LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459
           L  +M  E     D+  L  +L A   LA L+    +HCY    GF     V   LI  Y
Sbjct: 382 LLIKMRGEESFYLDSIMLIGVLSASGELALLELCQQLHCYAFESGFPRYRLVQNSLISAY 441

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
           SKCG +E A+ +F ++    +DIV W+ I+ GYG++GHGE AV+L+ EM +    P+  T
Sbjct: 442 SKCGDVEPAYNVFGQMGYI-RDIVSWNAILNGYGINGHGEIAVALYHEMRKGRENPDAAT 500

Query: 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
           +   L ACSH GL+D+GL +FN M+E        DH  CIVDLL RAG   +A + +   
Sbjct: 501 YLCVLSACSHSGLVDDGLVIFNQMVEERTIRPSQDHCGCIVDLLARAGCFSDAREFVSRY 560

Query: 580 PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAE 639
             K     W ALL  C +HGNV L E+AA+ + EL+PE PG  VLLS +Y++V R++DAE
Sbjct: 561 MEKMGPNAWRALLSGCQLHGNVGLAELAARRVCELDPEEPGQVVLLSNVYASVGRFQDAE 620

Query: 640 NVRDVMDEKGLRKAPAHSLI 659
            +R  M +K L K P  SL+
Sbjct: 621 ALRASMKKKELIKNPGISLL 640



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 181/359 (50%), Gaps = 10/359 (2%)

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
           G +   ++ L+  Y+K G +  A  +F+ + +RDVV+W+ MI+GY  NG  R ++ LF  
Sbjct: 23  GSDPINYSKLLSCYLKSGDIINAGKLFEEIPKRDVVSWSIMIHGYNRNGFRRKSMELFSQ 82

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M+   + P S T+  +L + + L     G+ +H   +K  L+ +  V TAL++ YAKC  
Sbjct: 83  MRISSLVPTSFTMVGVLVSIAGLGDPVLGQCVHGLILKYGLDSDFRVVTALLNAYAKCGN 142

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           V  S++VF +      V  +AI++G V+N L  +AV LF Q     + PN AT+ +L+ A
Sbjct: 143 VVDSYRVFEQLENPGLVSCSAIVSGFVYNELFEEAVVLFNQFRKLGMVPNAATVLTLIRA 202

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
              L   +   +IH  +++   +  V V+  ++D+YS    L++A ++F    ++ +D++
Sbjct: 203 CVALESRRLCESIHGMVVKLSLVLDVAVNNSVLDMYSSMLDLDAATRVFE--GMECRDVI 260

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ +I       +   A+ LF++M  +G+  + V   + + AC+  G L  G ++    
Sbjct: 261 SWTTMINLLVCLEYASDALMLFRQMRNTGICNDVVVVMNLISACAILGDLKRGREIHTQA 320

Query: 544 LENHQTC---SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           +     C   S       I+ +  + G LD +  +      K +   W A++  CV +G
Sbjct: 321 I----VCGFGSELPLTNSIIAMYSKCGDLDSSRTVFDQTTGK-SLVSWTAMILGCVQNG 374



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 101/194 (52%), Gaps = 2/194 (1%)

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
           S+H  T +     + I  + L+  Y K   +  + ++F    K+  V W+ ++ G   NG
Sbjct: 12  SIHTSTQRYPHGSDPINYSKLLSCYLKSGDIINAGKLFEEIPKRDVVSWSIMIHGYNRNG 71

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
             RK++ELF QM +  + P   T+  +L + A L D      +H  +++YG  S   V T
Sbjct: 72  FRRKSMELFSQMRISSLVPTSFTMVGVLVSIAGLGDPVLGQCVHGLILKYGLDSDFRVVT 131

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            L++ Y+KCG++  ++++F +  +++  +V  S I++G+  +   E AV LF +  + G+
Sbjct: 132 ALLNAYAKCGNVVDSYRVFEQ--LENPGLVSCSAIVSGFVYNELFEEAVVLFNQFRKLGM 189

Query: 514 QPNEVTFTSALHAC 527
            PN  T  + + AC
Sbjct: 190 VPNAATVLTLIRAC 203


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 216/615 (35%), Positives = 339/615 (55%), Gaps = 34/615 (5%)

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
           + ++K   + G   ++L +   M+  G + P + TY  +++ C +         LH  ++
Sbjct: 33  DGLVKSLCKQGRLREALHILQDMVENGIW-PHSSTYDSLLQGCLNAKSLPDAKLLHAHMI 91

Query: 139 ITGFD-MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
            T F+  D  +GN L+++Y+  G +  AR+VFD M   +VVSW  +I+ Y ++ + +EAL
Sbjct: 92  QTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEAL 151

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
             F  M   G++P+  +  S+LPAC  L+   +G    E+V GG    N+   N LVDMY
Sbjct: 152 GFFYEMQDVGIQPNHFTFASILPACTDLEV--LGEFHDEIVKGG-FESNVFVGNGLVDMY 208

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ-LMQFEGVRPNSLTI 316
            K G +  AR +FD+M +RDVV+W +MI GY  NG + +AL LFQ + + + +  N++  
Sbjct: 209 AKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMA 268

Query: 317 GSLLSACSSLY-----------------------YLKRGRSLHAWTIKQNL-ECEVIVET 352
           G   + C  +                        Y++ G    A+ + Q + E  VI   
Sbjct: 269 G--YAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWN 326

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           A+I  +A+   V+ + ++F    +   V WNA++AG   NG A  A++LF QM +  ++P
Sbjct: 327 AVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKP 386

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           N  T   +LPA A LA L+Q    H  +IR GF S V V   L+ +Y+KCGS+E A K+F
Sbjct: 387 NTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVF 446

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
             +  + +D    S +I GY ++G  + ++ LF++M  +G++P+ VTF   L AC H GL
Sbjct: 447 DRM--RQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGL 504

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           +DEG   F+ M   +      +HY C++DLLGRAG  DEA DLI  MP+KP   +WG+LL
Sbjct: 505 VDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLL 564

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
            AC  H N++LGE  A+ L  L P+NP  YVLLS +Y+A  RW D  +VR+ M ++ ++K
Sbjct: 565 SACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKK 624

Query: 653 APAHSLIEVRNILTA 667
               S I ++  + A
Sbjct: 625 KLGCSWIVIKKQVHA 639



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 150/510 (29%), Positives = 257/510 (50%), Gaps = 38/510 (7%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG--PLFTHLRSSLVRAY---GHVSNVRILFDEMSER 73
           L+Q     KS+   K LHA +I +        L + LV  Y   G +   R +FDEM  +
Sbjct: 70  LLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVK 129

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           +   +  ++  YA++    ++L  F  M  +G   P+++T+  ++ ACTDL    LG   
Sbjct: 130 NVVSWTAMIAAYARHEHGQEALGFFYEMQDVG-IQPNHFTFASILPACTDL--EVLG-EF 185

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H  ++  GF+ + FVGN L+ MY   G ++ AR++FD M +  VVSWN +I+GY +N   
Sbjct: 186 HDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLI 245

Query: 194 KEALVVFDWMLKSGV---------EPDCASVVSVLPACGYLKE---IEMGRMIHELVAGG 241
           ++AL +F  + K  V            C  V + +     + E   +    MI   V  G
Sbjct: 246 EDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNG 305

Query: 242 RLG-----------KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
            +            +N+ +WNA++  + + G V EA  +F  M E +VV+W +MI GY+ 
Sbjct: 306 SVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQ 365

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           NG   NAL LF  MQ   ++PN+ T   +L AC++L  L++G   H   I+   + +V+V
Sbjct: 366 NGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLV 425

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
              L+ MYAKC  ++ + +VF R  ++ +   +A++ G   NG +++++ELF QM    +
Sbjct: 426 GNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGL 485

Query: 411 EPNDATLNSLLPA--YAILADL-QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           +P+  T   +L A  +A L D  +Q  +I      Y     +E    +ID+  + G  + 
Sbjct: 486 KPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRF--YHITPAMEHYGCMIDLLGRAGCFDE 543

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
           A+ + +++PIK  D  +W  +++    H +
Sbjct: 544 ANDLINKMPIK-PDADMWGSLLSACRTHNN 572


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 184/501 (36%), Positives = 299/501 (59%), Gaps = 2/501 (0%)

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
           A  +F  + E    ++N +I G+       EA+++F  M ++ V+PD  +   +L  C  
Sbjct: 77  AVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSR 136

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           L+ +  G  IH L+     G +    N L+ MY  CG V  AR VFD MSER+V TW SM
Sbjct: 137 LQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSM 196

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
             GY  +G+    + LF  M    +R + +T+ S+L+AC  L  L+ G  ++ +  ++ L
Sbjct: 197 FAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGL 256

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
           +    + T+L+DMYAKC  V  + ++F +  ++  V W+A+++G       R+A++LF +
Sbjct: 257 KGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHE 316

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           M    ++PN+ T+ S+L + A+L  L+    +H ++ +      V + T L+D Y+KCGS
Sbjct: 317 MQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGS 376

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           +ES+ ++F ++P+K+  ++ W+V+I G   +G G+ A+  F  M++  V+PN+VTF   L
Sbjct: 377 VESSIEVFGKMPVKN--VLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVL 434

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            ACSH GL+DEG DLF  M  +     R +HY C+VD+LGRAG ++EA+  I+ MP++P 
Sbjct: 435 SACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPN 494

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
             +W  LL +C +H NVE+GE + K L  LEP + G+Y+LLS +Y++V RW+DA  VR  
Sbjct: 495 AVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGE 554

Query: 645 MDEKGLRKAPAHSLIEVRNIL 665
           M EKG++K P  SLIE+  ++
Sbjct: 555 MKEKGIKKTPGCSLIELDGVI 575



 Score =  282 bits (721), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 160/490 (32%), Positives = 264/490 (53%), Gaps = 9/490 (1%)

Query: 27  KSIAGTKQLHAFIITSGPLFTH------LRSSLVRAYGHVSNVRILFDEMSERSSFLYNT 80
           K+I    ++HA +I +  L         L S+ +     +     +F ++ E  S  YN 
Sbjct: 35  KTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNI 94

Query: 81  VMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT 140
           +++ +    + H+++ +F  M       PD +T+P ++K C+ L     G  +H  ++  
Sbjct: 95  MIRGFTLKQSPHEAILLFKEMHE-NSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKC 153

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           GF    FV N LI MY N GEV+ AR+VFD M E +V +WN++ +GY K+   +E + +F
Sbjct: 154 GFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLF 213

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
             ML+  +  D  ++VSVL ACG L ++E+G  I+  V    L  N     +LVDMY KC
Sbjct: 214 HEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKC 273

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           G V+ AR +FD+M  RDVV W++MI+GY+     R AL LF  MQ   + PN +T+ S+L
Sbjct: 274 GQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSIL 333

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           S+C+ L  L+ G+ +H +  K+ ++  V + TAL+D YAKC  V+ S +VF +   K  +
Sbjct: 334 SSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVL 393

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            W  ++ G   NG  +KA+E F  ML + VEPND T   +L A +    + +  ++   +
Sbjct: 394 SWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSM 453

Query: 441 IR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            R +G    +E    ++DI  + G +E A +    +PI+  + V+W  ++A   +H + E
Sbjct: 454 SRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQ-PNAVIWRTLLASCKVHKNVE 512

Query: 500 TAVSLFKEMV 509
                 K+++
Sbjct: 513 IGEESLKQLI 522


>gi|359492597|ref|XP_002282781.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g04860-like [Vitis vinifera]
          Length = 724

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 218/656 (33%), Positives = 362/656 (55%), Gaps = 30/656 (4%)

Query: 27  KSIAGTKQLHAFI-ITSGPLFTHLRSSLVRAY--------------GHVSNVRILFDEMS 71
           K   GT+ L A   I +  + THLR S    Y              G +   + LF+EM 
Sbjct: 56  KFAVGTRALDANTKIEANQIQTHLRKSGFNQYVYLTTAFLDFYGKLGCIYYAQHLFEEMP 115

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC--TDLAWRKL 129
            R    +N ++  Y++NG  +D+L++F+ MLR G + P   T   ++ +C   D+ ++  
Sbjct: 116 RRDVVSWNALICGYSRNGYDYDALEVFVQMLREG-FPPCQRTLVGLVPSCGRPDIIFQ-- 172

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G A+HG  + +G D+D  V N L +MY    +++AA  +F+ ++E + VSWNT+I  Y +
Sbjct: 173 GKAIHGFGIKSGLDLDCRVKNALTSMYAKCADLQAAEVLFEEIFEKTEVSWNTMIGAYGQ 232

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N    EA++VF  M K  VE +  +++S+L A  +L         H  V       + + 
Sbjct: 233 NGLFDEAMLVFKQMQKERVEVNYVTIISLLSANAHLDST------HCYVIKTGFATDASV 286

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQFEG 308
             +LV  Y  CG++  A L+++ M +R++V+ T+MI+GYA  G++   +  F Q++Q + 
Sbjct: 287 ITSLVCSYAGCGNIESAGLLYNLMPQRNLVSLTAMISGYAEKGNMGLVVECFTQMLQLK- 345

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           ++P+++ + S+L   +   ++  G  +HA+ +K  L  + +V   LI MY+K   ++  F
Sbjct: 346 MKPDAVAMVSILHGFTDPTFIGSGLGIHAYGLKTGLCADCLVVNGLISMYSKFGDIETVF 405

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
            +F+   +K+ + WN++++ C+  G    A+ELF QM +    P+  T+ SLL   + + 
Sbjct: 406 SLFSEMGEKQLISWNSVISACIQVGRTSDAMELFCQMRMYGHSPDAITIASLLAGCSEVG 465

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            LQ    +H Y++R        + T L+D+Y KCG LESA ++F    IK+  +  W+ +
Sbjct: 466 FLQFGERLHNYVLRNNLDMEDFLETALVDMYIKCGRLESAERVFK--SIKEPCLATWNTM 523

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           I+GYG+ GH   A+S + EM + G++P+ +TF   L AC+HGGL+ EG   F  M E+  
Sbjct: 524 ISGYGLSGHEHRALSCYSEMQEQGLKPDRITFLGVLSACTHGGLVWEGKRYFRSMREDFG 583

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAA 608
                 H  C+VDLL RAG L+EA   ++ M ++P  A+WGALL +C IH  ++LGE  A
Sbjct: 584 MIPGLQHNACMVDLLSRAGFLEEAVIFVKNMEVEPDSAIWGALLTSCCIHQELKLGECLA 643

Query: 609 KWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
           K L  L+  + G YVL+S LY++  RW D   VR +M + G   +   SLIEV ++
Sbjct: 644 KRLLLLDYYSGGLYVLMSNLYASKGRWDDVARVRKMMKDTGGDGSSGISLIEVSSL 699


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 205/531 (38%), Positives = 301/531 (56%), Gaps = 8/531 (1%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           LH   + +GF  D FV + L  +Y        ARKVFDA+     V WNTL++G      
Sbjct: 145 LHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGL----S 200

Query: 193 AKEALVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
             EAL  F  M  +G V PD  ++ SVLPA   +    MGR +H       L ++     
Sbjct: 201 GSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVT 260

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            L+ +Y KCG +  AR +FDRM   D+VT+ ++I+GY++NG V +++ LF+ +   G+RP
Sbjct: 261 GLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRP 320

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +S T+ +L+   S   +      LHA  +K  L+    V TAL  +Y + N +  + + F
Sbjct: 321 SSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAF 380

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
               +K    WNA+++G   NGL   AV LF+QM    V PN  T++S L A A L  L 
Sbjct: 381 DAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALS 440

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               +H  +        V V T LID+Y KCGS+  A  IF  +   +K++V W+V+I+G
Sbjct: 441 LGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSM--DNKNVVSWNVMISG 498

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           YG+HG G  A+ L+K+M+ + + P   TF S L+ACSHGGL+ EG  +F  M  ++    
Sbjct: 499 YGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITP 558

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT-HAVWGALLGACVIHGNVELGEVAAKW 610
             +H TC+VDLLGRAG+L EA++LI   P       +WGALLGAC++H + +L ++A++ 
Sbjct: 559 GIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQK 618

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           LFELEPEN G YVLLS LY++ +++ +A  VR     + L K P  +LIE+
Sbjct: 619 LFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEI 669



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 138/477 (28%), Positives = 235/477 (49%), Gaps = 9/477 (1%)

Query: 30  AGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVS---NVRILFDEMSERSSFLYNTVMKMY 85
           A  + LHA  + SG      + S+L + Y  +S   + R +FD +    + L+NT++   
Sbjct: 140 AALRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGL 199

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
           + +    ++L+ F+ M   G   PD+ T   V+ A  ++A   +G  +H      G    
Sbjct: 200 SGS----EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQH 255

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
             V   LI++Y   G+++ AR +FD M    +V++N LISGY  N     ++ +F  ++ 
Sbjct: 256 EHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVG 315

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
            G+ P  +++V+++P         +   +H  V    L  N     AL  +Y +   ++ 
Sbjct: 316 MGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDS 375

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           AR  FD M E+ + +W +MI+GYA NG    A+ LFQ MQ   VRPN LTI S LSAC+ 
Sbjct: 376 ARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQ 435

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           L  L  G+ +H     + LE  V V TALIDMY KC  +  +  +F     K  V WN +
Sbjct: 436 LGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVM 495

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YG 444
           ++G   +G   +A++L++ M+   + P  +T  S+L A +    +++   +   +   YG
Sbjct: 496 ISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYG 555

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
               +E  T ++D+  + G L+ A ++ SE P       +W  ++    +H  G+ A
Sbjct: 556 ITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLA 612


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 205/640 (32%), Positives = 348/640 (54%), Gaps = 14/640 (2%)

Query: 27  KSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMK 83
           + +   +Q+H  I  +      L + +VRAYG    V++ R  FD ++ ++ + + +++ 
Sbjct: 38  QDLESVRQIHDRISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLT 97

Query: 84  MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT-GF 142
            YAQNG    +L ++  M    +  P+   Y  V+ AC  +   + G A+H R+  T G 
Sbjct: 98  AYAQNGHYRAALDLYKRM----DLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGL 153

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
            +D  + N L+ MY   G ++ A+++F+ M   SV SWN +I+ Y ++ + +EA+ +++ 
Sbjct: 154 KLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYED 213

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           M    VEP   +  SVL AC  L  ++ GR IH L++      +++  NAL+ MY +C  
Sbjct: 214 M---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKC 270

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           +++A  +F R+  RDVV+W++MI  +A       A+  +  MQ EGVRPN  T  S+L A
Sbjct: 271 LDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLA 330

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           C+S+  L+ GR++H   +    +  ++  TAL+D+Y     +  +  +F +   +    W
Sbjct: 331 CASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLW 390

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS-LLPAYAILADLQQAMNIHCYLI 441
             ++ G    G     +EL+R+M      P    + S ++ A A L     A   H  + 
Sbjct: 391 TVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIE 450

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
             G +S   ++T L+++YS+ G+LESA ++F ++    +D + W+ +IAGY  HG    A
Sbjct: 451 ADGMISDFVLATSLVNMYSRWGNLESARQVFDKMS--SRDTLAWTTLIAGYAKHGEHGLA 508

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561
           + L+KEM   G +P+E+TF   L+ACSH GL ++G  LF  +  ++       HY+CI+D
Sbjct: 509 LGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIID 568

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGN 621
           LL RAGRL +A +LI  MP++P    W +LLGA  IH +V+    AA  + +L+P +P +
Sbjct: 569 LLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPAS 628

Query: 622 YVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           YVLLS +++         +VR+ M  +G++K    S IEV
Sbjct: 629 YVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEV 668


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 208/639 (32%), Positives = 331/639 (51%), Gaps = 35/639 (5%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           KQLH  ++  G    T++ ++LV  Y   G++S+   +F  MS+R    YN+++   AQ 
Sbjct: 271 KQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQ 330

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G  + +L +F  M  L    PD  T   ++ AC  +     G   H   +  G   D  V
Sbjct: 331 GYINRALALFKKM-NLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVV 389

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
              L+ +Y+   ++K A + F             L  G   N    ++  +F  M   G+
Sbjct: 390 EGSLLDLYVKCSDIKTAHEFF-------------LCYGQLDNL--NKSFQIFTQMQIEGI 434

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P+  +  S+L  C  L   ++G  IH  V       N+   + L+DMY K G ++ A  
Sbjct: 435 VPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALK 494

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +F R+ E DVV+WT+MI GY  +     AL LF+ MQ +G++ +++   S +SAC+ +  
Sbjct: 495 IFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQA 554

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L +GR +HA +       ++ +  AL+ +YA+C  V+ ++  F +   K  V WN++++G
Sbjct: 555 LDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSG 614

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
              +G   +A+ +F QM    +E N  T  S + A A +A+++    IH  + + G+ S 
Sbjct: 615 FAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSE 674

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
            EVS  LI +Y+KCG++               D + W+ +I GY  HG G  A+ LF++M
Sbjct: 675 TEVSNALITLYAKCGTI---------------DDISWNSMITGYSQHGCGFEALKLFEDM 719

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
            Q  V PN VTF   L ACSH GL+DEG+  F  M E H    + +HY C+VDLLGR+G 
Sbjct: 720 KQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGL 779

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           L  A   +  MP++P   VW  LL AC +H N+++GE AA  L ELEP++   YVL+S +
Sbjct: 780 LSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNM 839

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           Y+   +W   +  R +M ++G++K P  S +EV N + A
Sbjct: 840 YAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHA 878



 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 166/553 (30%), Positives = 278/553 (50%), Gaps = 45/553 (8%)

Query: 56  AYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
           A+G ++    +FDEM  RS   +N +   +           +F  ML       D   + 
Sbjct: 109 AFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRML-TKNVEFDERIFA 167

Query: 116 IVIKACTDLAWR-KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
           +V++ C+  A   +    +H + + +GF+  TF+ N LI +Y   G + +A+KVF+ +  
Sbjct: 168 VVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKA 227

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
              VSW  +ISG  +N Y +EA+++F  +              VL AC  ++  E G+ +
Sbjct: 228 RDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQL 273

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H LV            NALV +Y + G+++ A  +F  MS+RD V++ S+I+G A  G +
Sbjct: 274 HGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYI 333

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             AL LF+ M  +  +P+ +T+ SLLSAC+S+  L  G+  H++ IK  +  +++VE +L
Sbjct: 334 NRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSL 393

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           +D+Y KC+ +K + + F             +  G + N    K+ ++F QM +E + PN 
Sbjct: 394 LDLYVKCSDIKTAHEFF-------------LCYGQLDN--LNKSFQIFTQMQIEGIVPNQ 438

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
            T  S+L     L        IH  +++ GF   V VS+ LID+Y+K G L+ A KIF  
Sbjct: 439 FTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRR 498

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
             +K+ D+V W+ +IAGY  H     A++LFKEM   G++ + + F SA+ AC+    LD
Sbjct: 499 --LKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALD 556

Query: 535 EGLDLFNFMLENHQTC--SRADHYT---CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
           +G  +      + Q+C    +D  +    +V L  R G++ EAY     +  K  +  W 
Sbjct: 557 QGRQI------HAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKD-NVSWN 609

Query: 590 ALLGACVIHGNVE 602
           +L+      G  E
Sbjct: 610 SLVSGFAQSGYFE 622



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 140/498 (28%), Positives = 243/498 (48%), Gaps = 32/498 (6%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAYGHVSNVRILFDEMSERS 74
           V  L+   A+  ++   KQ H++ I +G      +  SL+  Y   S+++      +   
Sbjct: 355 VASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIK------TAHE 408

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
            FL       Y Q    + S ++F  M ++    P+ +TYP ++K CT L    LG  +H
Sbjct: 409 FFL------CYGQLDNLNKSFQIFTQM-QIEGIVPNQFTYPSILKTCTTLGATDLGEQIH 461

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
            +VL TGF  + +V + LI MY   G++  A K+F  + E+ VVSW  +I+GY ++    
Sbjct: 462 TQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFT 521

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           EAL +F  M   G++ D     S + AC  ++ ++ GR IH          +++  NALV
Sbjct: 522 EALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALV 581

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
            +Y +CG V EA   FD++  +D V+W S+++G+A +G    AL +F  M   G+  NS 
Sbjct: 582 SLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSF 641

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T GS +SA +++  ++ G+ +H    K   + E  V  ALI +YAKC  +          
Sbjct: 642 TFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTI---------- 691

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
                + WN+++ G   +G   +A++LF  M    V PN  T   +L A + +  + + +
Sbjct: 692 ---DDISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGI 748

Query: 435 NIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
           +    +   +  +   E    ++D+  + G L  A +   E+PI+  D +VW  +++   
Sbjct: 749 SYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQ-PDAMVWRTLLSACN 807

Query: 494 MHGH---GETAVSLFKEM 508
           +H +   GE A S   E+
Sbjct: 808 VHKNIDIGEFAASHLLEL 825



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 205/451 (45%), Gaps = 40/451 (8%)

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           LI  Y+ FG++  A  VFD M   S+  WN + + +           +F  ML   VE D
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 212 CASVVSVLPAC-GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
                 VL  C G          IH          +    N L+D+Y K G ++ A+ VF
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
           + +  RD V+W +MI+G + NG    A+ LF  +              +LSAC+ + + +
Sbjct: 223 ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFE 268

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
            G+ LH   +KQ    E  V  AL+ +Y++   +  + Q+F   S++  V +N++++G  
Sbjct: 269 FGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLA 328

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
             G   +A+ LF++M ++  +P+  T+ SLL A A +  L      H Y I+ G  S + 
Sbjct: 329 QQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIV 388

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           V   L+D+Y KC  +++AH+ F                   YG   +   +  +F +M  
Sbjct: 389 VEGSLLDLYVKCSDIKTAHEFF-----------------LCYGQLDNLNKSFQIFTQMQI 431

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGR 568
            G+ PN+ T+ S L  C+  G  D G  +   +L   +T  + + Y  + ++D+  + G+
Sbjct: 432 EGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVL---KTGFQFNVYVSSVLIDMYAKHGK 488

Query: 569 LDEAYDLIRTMPLKPTHAV-WGALLGACVIH 598
           LD A  + R   LK    V W A++     H
Sbjct: 489 LDHALKIFRR--LKENDVVSWTAMIAGYTQH 517



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 164/372 (44%), Gaps = 35/372 (9%)

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+D Y+  G +N A  VFD M  R +  W  + N +     +    GLF+ M  + V  +
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFD 162

Query: 313 SLTIGSLLSACS-SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
                 +L  CS +    +    +HA TI    E    +   LID+Y K   +  + +VF
Sbjct: 163 ERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVF 222

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
                + +V W A+++G   NG   +A+ LF Q+              +L A   +   +
Sbjct: 223 ENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFE 268

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               +H  +++ GF S   V   L+ +YS+ G+L SA +IF  +  +D+  V ++ +I+G
Sbjct: 269 FGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDR--VSYNSLISG 326

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC- 550
               G+   A++LFK+M     +P+ VT  S L AC+  G L  G    ++ ++   T  
Sbjct: 327 LAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSD 386

Query: 551 -----SRADHYTCIVDL---------LGRAGRLDEAYDLIRTMPLK---PTHAVWGALLG 593
                S  D Y    D+          G+   L++++ +   M ++   P    + ++L 
Sbjct: 387 IVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILK 446

Query: 594 ACVIHGNVELGE 605
            C   G  +LGE
Sbjct: 447 TCTTLGATDLGE 458



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 133/335 (39%), Gaps = 51/335 (15%)

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
           + +G   LM+  GVR NS T   LL  C           L++ +    L+        LI
Sbjct: 64  SGIGYLHLMEQHGVRANSQTFLWLLEGC-----------LNSRSFYDGLK--------LI 104

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           D Y     +  +  VF     +    WN I    +   L  +   LFR+ML + VE ++ 
Sbjct: 105 DFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDER 164

Query: 416 TLNSLLPAYAILA-DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
               +L   +  A   +    IH   I  GF S   +   LID+Y K G L SA K+F  
Sbjct: 165 IFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFEN 224

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV--------------TF 520
             +K +D V W  +I+G   +G+ E A+ LF ++V S     E                F
Sbjct: 225 --LKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGF 282

Query: 521 TSALHAC-------SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
           +S  + C       S  G L     +F+ M +  +       Y  ++  L + G ++ A 
Sbjct: 283 SSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRV-----SYNSLISGLAQQGYINRAL 337

Query: 574 DLIRTMPL---KPTHAVWGALLGACVIHGNVELGE 605
            L + M L   KP      +LL AC   G +  G+
Sbjct: 338 ALFKKMNLDCQKPDCVTVASLLSACASVGALPNGK 372


>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
 gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
          Length = 602

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 194/532 (36%), Positives = 314/532 (59%), Gaps = 7/532 (1%)

Query: 133 LHGRVLITG-FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
           +H  ++ TG F  ++     +IA Y   G + +AR +FD + +  V +WN +I  Y +  
Sbjct: 26  IHALIITTGLFFANSNFNGLVIASYARIGGITSARHLFDKLPQRGVDAWNAMIVAYSRRY 85

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
           +  E L ++  M+  G +PD ++    + A   LK++E G  I         G ++   +
Sbjct: 86  HLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAGERIWRRAVDFGYGCDVFVGS 145

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           +++++YVKCG ++EA+LVFD+M +RDVV W +MI G   NG+V  A+ +F+ M+ EG+  
Sbjct: 146 SVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDMFRRMRKEGIEG 205

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN-LECEVIVETALIDMYAKCNLVKLSFQV 370
           + + +  L+ AC++L  LK G S+H   +++  L  +VI++T+L+DMYAK   ++L+ +V
Sbjct: 206 DGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYAKIGDLELASRV 265

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F +  +K  V W A+++G   NG A  A++L  +M     +P+ A L S L A + +  L
Sbjct: 266 FEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVSALLACSQVGHL 325

Query: 431 QQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           +   +IH Y++R  GF  V+   T LID+Y+KCGSL  AH IF  +    +D+++W+ +I
Sbjct: 326 KLGKSIHGYIVRRLGFELVL--GTALIDMYAKCGSLSCAHAIFDRV--DSRDVILWNTMI 381

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           A YG+HG G+  +SLF +M ++ + P+  TF S L A SH G +D G   FN M+   + 
Sbjct: 382 ASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVDVGQYWFNAMVNECKI 441

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
                HY C+VDL  RAGR++EAY LI +M  +P  A+W ALL  C  + N+  GEVAAK
Sbjct: 442 PPSEKHYACMVDLFSRAGRVEEAYQLIESMNTEPGLAIWVALLSGCHNYRNLLFGEVAAK 501

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            + +L P++ G Y L+S  +S  R W     +R +M E G++K P +S +EV
Sbjct: 502 KILDLNPDDLGIYALVSNFFSLARMWDRVSILRKIMKETGMKKVPGYSAVEV 553



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 253/474 (53%), Gaps = 10/474 (2%)

Query: 25  ATKSIAGTKQLHAFIITSGPLF--THLRSSLVRAY---GHVSNVRILFDEMSERSSFLYN 79
           A K  A   Q+HA IIT+G  F  ++    ++ +Y   G +++ R LFD++ +R    +N
Sbjct: 16  ACKDEAPVTQIHALIITTGLFFANSNFNGLVIASYARIGGITSARHLFDKLPQRGVDAWN 75

Query: 80  TVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLI 139
            ++  Y++     + L ++  M+  G   PD+ T+ + IKA + L   + G  +  R + 
Sbjct: 76  AMIVAYSRRYHLTEVLNLYHQMVNEGG-KPDSSTFTVAIKASSSLKDLEAGERIWRRAVD 134

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
            G+  D FVG+ ++ +Y+  G++  A+ VFD M +  VV W T+I+G  +N    EA+ +
Sbjct: 135 FGYGCDVFVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDM 194

Query: 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVDMYV 258
           F  M K G+E D   ++ ++ AC  L E+++G  +H   V    L  ++    +LVDMY 
Sbjct: 195 FRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYA 254

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           K G +  A  VF++M  ++ V+W ++I+G+A NG    AL L   MQ    +P++  + S
Sbjct: 255 KIGDLELASRVFEQMPRKNAVSWGALISGFAQNGFAEYALDLLVEMQSLEFKPDTAVLVS 314

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
            L ACS + +LK G+S+H + +++ L  E+++ TALIDMYAKC  +  +  +F R   + 
Sbjct: 315 ALLACSQVGHLKLGKSIHGYIVRR-LGFELVLGTALIDMYAKCGSLSCAHAIFDRVDSRD 373

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
            + WN ++A    +G  ++ + LF +M    + P+ AT  SLL A +    +        
Sbjct: 374 VILWNTMIASYGIHGDGKEVLSLFLKMKEANISPDHATFASLLSALSHSGQVDVGQYWFN 433

Query: 439 YLIRYGFLSVVEVSTG-LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
            ++    +   E     ++D++S+ G +E A+++   +   +  + +W  +++G
Sbjct: 434 AMVNECKIPPSEKHYACMVDLFSRAGRVEEAYQLIESMN-TEPGLAIWVALLSG 486


>gi|357440905|ref|XP_003590730.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479778|gb|AES60981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 627

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 198/560 (35%), Positives = 321/560 (57%), Gaps = 17/560 (3%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           +++   DL   KL    H ++L   F  + F+   LI+ Y  FG+   ++ VFD++   +
Sbjct: 32  LLQLSIDLHSLKLTQQCHSQILTNCFSQNAFLTTRLISAYATFGDSIMSKLVFDSVHTKN 91

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V  WN+LI+GY KN     A+V+F  M +  + PD  ++ ++    G ++++ +G++IH 
Sbjct: 92  VYLWNSLINGYVKNHQFDNAIVLFRQMGRC-LLPDDYTLATISKVSGEIQDLVLGKLIHG 150

Query: 237 LVAGGRLG--KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
                R+G   +I   N+++ MY++C    +A  VFD M +R+V ++  +I+G A  G++
Sbjct: 151 --KSLRIGFVSDIVVGNSVMSMYIRCREFGDAMKVFDEMPQRNVGSFNVIISGCAALGNL 208

Query: 295 RNAL-----GLFQLMQFEGVRPNSLTIGSLLS-ACSSLYYLKRGRSLHAWTIKQNLE--- 345
             +L       F+ MQ +G   ++ T+ SLL   C S      GR LH + +K  L+   
Sbjct: 209 DYSLYADLWNFFRRMQCQGYNADAFTVASLLPMCCDSDGKFDHGRELHCYLVKNGLDLKM 268

Query: 346 -CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
             +V + ++LIDMY++ N + LS +VF +   +    W A++ G V NG    A+ LFR+
Sbjct: 269 CSDVHMGSSLIDMYSRSNKLVLSRRVFDQMKSRNIYVWTAMINGYVQNGAPEGALILFRE 328

Query: 405 ML-VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
           M   + + PN  +L S+LPA  +L  L     +H + I+  F   + +   LID+Y+KCG
Sbjct: 329 MQRKDRIRPNRVSLVSVLPACGLLVGLMGGKQVHAFSIKMEFNDYISLRNALIDMYAKCG 388

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
           SL+ A ++F       KD + WS II+ YG+HG G+ A++ + EM+Q G++P+ +T    
Sbjct: 389 SLDYARRVFDNGSYS-KDAITWSSIISAYGLHGKGQEALTTYYEMLQQGIKPDMITVVGV 447

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           L AC   GL+DEG+ ++N +   ++     +   C+VDLLGR+G+LD+A D IR MP+ P
Sbjct: 448 LSACCRSGLVDEGISIYNSLTTEYEMKPSVEICGCVVDLLGRSGQLDQALDFIREMPIIP 507

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643
             +VWG+LL A VIHGN    ++A + L ELEPENP NY+ LS  Y++ RRW +   VR 
Sbjct: 508 GPSVWGSLLTASVIHGNSMTRDLAYRCLLELEPENPSNYISLSNTYASSRRWDEITEVRS 567

Query: 644 VMDEKGLRKAPAHSLIEVRN 663
           +M E+GLRK P  S I + +
Sbjct: 568 MMKERGLRKVPGISWITISD 587



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 149/508 (29%), Positives = 261/508 (51%), Gaps = 24/508 (4%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH---LRSSLVRAYGHVSNV---RI 65
           + H ++ L+Q      S+  T+Q H+ I+T+   F+    L + L+ AY    +    ++
Sbjct: 25  SPHNLLHLLQLSIDLHSLKLTQQCHSQILTN--CFSQNAFLTTRLISAYATFGDSIMSKL 82

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD +  ++ +L+N+++  Y +N    +++ +F  M R     PD+YT   + K   ++ 
Sbjct: 83  VFDSVHTKNVYLWNSLINGYVKNHQFDNAIVLFRQMGRC--LLPDDYTLATISKVSGEIQ 140

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
              LG  +HG+ L  GF  D  VGN +++MY+   E   A KVFD M + +V S+N +IS
Sbjct: 141 DLVLGKLIHGKSLRIGFVSDIVVGNSVMSMYIRCREFGDAMKVFDEMPQRNVGSFNVIIS 200

Query: 186 GYFKNAYAKEALVVFDW-----MLKSGVEPDCASVVSVLP-ACGYLKEIEMGRMIH-ELV 238
           G         +L    W     M   G   D  +V S+LP  C    + + GR +H  LV
Sbjct: 201 GCAALGNLDYSLYADLWNFFRRMQCQGYNADAFTVASLLPMCCDSDGKFDHGRELHCYLV 260

Query: 239 AGG---RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
             G   ++  ++   ++L+DMY +   +  +R VFD+M  R++  WT+MINGY  NG   
Sbjct: 261 KNGLDLKMCSDVHMGSSLIDMYSRSNKLVLSRRVFDQMKSRNIYVWTAMINGYVQNGAPE 320

Query: 296 NALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
            AL LF+ MQ +  +RPN +++ S+L AC  L  L  G+ +HA++IK      + +  AL
Sbjct: 321 GALILFREMQRKDRIRPNRVSLVSVLPACGLLVGLMGGKQVHAFSIKMEFNDYISLRNAL 380

Query: 355 IDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           IDMYAKC  +  + +VF   S  K  + W++I++    +G  ++A+  + +ML + ++P+
Sbjct: 381 IDMYAKCGSLDYARRVFDNGSYSKDAITWSSIISAYGLHGKGQEALTTYYEMLQQGIKPD 440

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYL-IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
             T+  +L A      + + ++I+  L   Y     VE+   ++D+  + G L+ A    
Sbjct: 441 MITVVGVLSACCRSGLVDEGISIYNSLTTEYEMKPSVEICGCVVDLLGRSGQLDQALDFI 500

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGET 500
            E+PI      VW  ++    +HG+  T
Sbjct: 501 REMPIIPGP-SVWGSLLTASVIHGNSMT 527


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 194/552 (35%), Positives = 312/552 (56%), Gaps = 8/552 (1%)

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG-EVKAARKVFD 170
           + Y  +++ CT       GI  H   + +G D D FVGN L+A+Y   G  +  AR+VFD
Sbjct: 61  FFYASLLQTCTKAVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFD 120

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
            ++   ++SW ++I+GY K    K++L +F  ML  G+EP+  ++ +V+ AC  L ++ +
Sbjct: 121 GLFYKDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRL 180

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
           G+  H +V       N     AL+DMY +  +V++A LVF  + + D + WTS+I+ +  
Sbjct: 181 GKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTR 240

Query: 291 NGDVRNALGLFQLM-QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
           N     ALG F  M +  G+ P+  T G++L+AC +L  LK+G+ +HA  I   L   V 
Sbjct: 241 NDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVF 300

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           VE++L+DMY KC LV  S  VF R S K  V W A+L G   NG     + +FR    E 
Sbjct: 301 VESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFR----EG 356

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
            + +  +  ++L A A LA ++Q   +HC  ++      V   + L+D+Y+KCG ++ A+
Sbjct: 357 KKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAY 416

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
           +IF  + +++  ++ W+ +I G+  +G G     LF EM++ G++P+ ++F   L ACSH
Sbjct: 417 RIFVRMSVRN--LITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFACSH 474

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
            GL+D+G   F  M E ++     +HY C++DLLGRAG L+EA +LI     +   ++W 
Sbjct: 475 AGLVDQGKKYFAAMTEVYEIKPGIEHYNCMIDLLGRAGLLEEAENLIENANCRDEPSLWT 534

Query: 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
            LLGAC    +    E  AK   EL+P++  +YV L+ +Y AV RW DA  +R++M ++G
Sbjct: 535 VLLGACAASPHSATAERIAKKAVELKPDHHLSYVYLANVYRAVGRWDDAVKIRNLMTKRG 594

Query: 650 LRKAPAHSLIEV 661
           + K P  S IE 
Sbjct: 595 VGKMPGTSWIET 606



 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 150/498 (30%), Positives = 264/498 (53%), Gaps = 23/498 (4%)

Query: 26  TKSIAGTK--QLHAFIITSG-PLFTHLRSSLVRAY----GHVSNVRILFDEMSERSSFLY 78
           TK+++ T   Q H+  I SG      + +SL+  Y     ++   R +FD +  +    +
Sbjct: 71  TKAVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFDGLFYKDLISW 130

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
            +++  Y +      SL++FL ML LG   P+ +T   VIKAC+ L   +LG   HG V+
Sbjct: 131 TSMITGYVKVEKPKKSLELFLEMLGLG-IEPNGFTLSAVIKACSGLGDLRLGKCFHGVVM 189

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
           + GFD++  +   LI MY     V  A  VF  + +   + W ++IS + +N    +AL 
Sbjct: 190 VRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTRNDVYDKALG 249

Query: 199 VFDWML-KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
            F  M  K G+ PD  +  +VL ACG L  ++ G+ +H  V    L  N+   ++LVDMY
Sbjct: 250 FFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVFVESSLVDMY 309

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
            KC  VN+++ VFDRMS +++V+WT+++ GY  NGD  + + +F+    EG + ++ + G
Sbjct: 310 GKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIFR----EGKKVDTYSFG 365

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           ++L AC+ L  +++G+ +H   +K+    +V+ E+AL+D+YAKC  +  ++++F R S +
Sbjct: 366 TVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAYRIFVRMSVR 425

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--YAILADLQQ--- 432
             + WN+++ G   NG   +  +LF +M+ E + P+  +   +L A  +A L D  +   
Sbjct: 426 NLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFACSHAGLVDQGKKYF 485

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
           A     Y I+ G    +E    +ID+  + G LE A  +      +D+   +W+V++   
Sbjct: 486 AAMTEVYEIKPG----IEHYNCMIDLLGRAGLLEEAENLIENANCRDEP-SLWTVLLGAC 540

Query: 493 GMHGHGETAVSLFKEMVQ 510
               H  TA  + K+ V+
Sbjct: 541 AASPHSATAERIAKKAVE 558



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 190/383 (49%), Gaps = 19/383 (4%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           K  H  ++  G  L   + ++L+  YG    V +  ++F E+ +  +  + +++  + +N
Sbjct: 182 KCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTRN 241

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
                +L  F  M R    +PD +T+  V+ AC +L   K G  +H +V+ +G   + FV
Sbjct: 242 DVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLSGNVFV 301

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            + L+ MY     V  ++ VFD M   ++VSW  L+ GY +N   +  + +F    + G 
Sbjct: 302 ESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIF----REGK 357

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           + D  S  +VL AC  L  +  G+ +H         +++   +ALVD+Y KCG ++ A  
Sbjct: 358 KVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKCGCIDFAYR 417

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +F RMS R+++TW SMI G+A NG       LF  M  EG+RP+ ++   +L ACS    
Sbjct: 418 IFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFACSHAGL 477

Query: 329 LKRGRSLHAWTIKQNLECEVIVE--TALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAI 385
           + +G+   A  + +  E +  +E    +ID+  +  L++ +  +    + + +   W  +
Sbjct: 478 VDQGKKYFA-AMTEVYEIKPGIEHYNCMIDLLGRAGLLEEAENLIENANCRDEPSLWTVL 536

Query: 386 LAGCV---HNG----LARKAVEL 401
           L  C    H+     +A+KAVEL
Sbjct: 537 LGACAASPHSATAERIAKKAVEL 559


>gi|15233292|ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22150, chloroplastic; Flags: Precursor
 gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 820

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 208/607 (34%), Positives = 353/607 (58%), Gaps = 12/607 (1%)

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
           VR +FD M  ++   +NT++  Y + G + ++ + F  M+R+ E  P   ++  V  A +
Sbjct: 167 VRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRM-EVKPSPVSFVNVFPAVS 225

Query: 123 DLAWRKLGIALHGRVLITG--FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
                K     +G +L  G  +  D FV +  I+MY   G+++++R+VFD+  E ++  W
Sbjct: 226 ISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVW 285

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           NT+I  Y +N    E++ +F   + S  +  D  + +    A   L+++E+GR  H  V+
Sbjct: 286 NTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVS 345

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
                  I   N+L+ MY +CGSV+++  VF  M ERDVV+W +MI+ +  NG     L 
Sbjct: 346 KNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLM 405

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           L   MQ +G + + +T+ +LLSA S+L   + G+  HA+ I+Q ++ E +  + LIDMY+
Sbjct: 406 LVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEGM-NSYLIDMYS 464

Query: 360 KCNLVKLSFQVFART--SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           K  L+++S ++F  +  +++    WN++++G   NG   K   +FR+ML + + PN  T+
Sbjct: 465 KSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTV 524

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            S+LPA + +  +     +H + IR      V V++ L+D+YSK G+++ A  +FS+   
Sbjct: 525 ASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQT-- 582

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
           K+++ V ++ +I GYG HG GE A+SLF  M +SG++P+ +TF + L ACS+ GL+DEGL
Sbjct: 583 KERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGL 642

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA-VWGALLGACV 596
            +F  M E +     ++HY CI D+LGR GR++EAY+ ++ +  +   A +WG+LLG+C 
Sbjct: 643 KIFEEMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCK 702

Query: 597 IHGNVELGEVAAKWL--FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP 654
           +HG +EL E  ++ L  F+      G  VLLS +Y+  ++WK  + VR  M EKGL+K  
Sbjct: 703 LHGELELAETVSERLAKFDKGKNFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEV 762

Query: 655 AHSLIEV 661
             S IE+
Sbjct: 763 GRSGIEI 769



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 167/589 (28%), Positives = 288/589 (48%), Gaps = 22/589 (3%)

Query: 41  TSGPLFTHLRSSLVR--AYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMF 98
           T  P    +RS L +    G+    R LFD + + ++ L+NT++  +  N   H++L  +
Sbjct: 34  TLTPQTPSIRSRLSKICQDGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFY 93

Query: 99  LGMLRLGEY-NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYM 157
             M +   + N D YTY   +KAC +    K G A+H  ++    +    V N L+ MY+
Sbjct: 94  SRMKKTAPFTNCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYV 153

Query: 158 ------NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
                 +  E    RKVFD M   +VV+WNTLIS Y K     EA   F  M++  V+P 
Sbjct: 154 SCLNAPDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPS 213

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELV--AGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
             S V+V PA    + I+   + + L+   G    K++   ++ + MY + G +  +R V
Sbjct: 214 PVSFVNVFPAVSISRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRV 273

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYY 328
           FD   ER++  W +MI  Y  N  +  ++ LF + +  + +  + +T     SA S+L  
Sbjct: 274 FDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVSALQQ 333

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           ++ GR  H +  K   E  +++  +L+ MY++C  V  SF VF    ++  V WN +++ 
Sbjct: 334 VELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISA 393

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            V NGL  + + L  +M  +  + +  T+ +LL A + L + +     H +LIR G +  
Sbjct: 394 FVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQG-IQF 452

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             +++ LID+YSK G +  + K+F      ++D   W+ +I+GY  +GH E    +F++M
Sbjct: 453 EGMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKM 512

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH--QTCSRADHYTCIVDLLGRA 566
           ++  ++PN VT  S L ACS  G +D G  L  F +  +  Q    A   + +VD+  +A
Sbjct: 513 LEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVA---SALVDMYSKA 569

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
           G +  A D+      + +      +LG    +G   +GE A      ++
Sbjct: 570 GAIKYAEDMFSQTKERNSVTYTTMILG----YGQHGMGERAISLFLSMQ 614



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/463 (28%), Positives = 236/463 (50%), Gaps = 6/463 (1%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           S+    G + + R +FD   ER+  ++NT++ +Y QN    +S+++FL  +   E   D 
Sbjct: 259 SMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDE 318

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            TY +   A + L   +LG   HG V     ++   + N L+ MY   G V  +  VF +
Sbjct: 319 VTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLS 378

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M E  VVSWNT+IS + +N    E L++   M K G + D  +V ++L A   L+  E+G
Sbjct: 379 MRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIG 438

Query: 232 RMIHELVAGGRLGKNIAAWNA-LVDMYVKCGSVNEARLVFDR--MSERDVVTWTSMINGY 288
           +  H  +   R G      N+ L+DMY K G +  ++ +F+    +ERD  TW SMI+GY
Sbjct: 439 KQTHAFLI--RQGIQFEGMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGY 496

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
             NG       +F+ M  + +RPN++T+ S+L ACS +  +  G+ LH ++I+Q L+  V
Sbjct: 497 TQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNV 556

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            V +AL+DMY+K   +K +  +F++T ++ +V +  ++ G   +G+  +A+ LF  M   
Sbjct: 557 FVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQES 616

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLES 467
            ++P+  T  ++L A +    + + + I   +   Y      E    + D+  + G +  
Sbjct: 617 GIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDMLGRVGRVNE 676

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           A++    +  +     +W  ++    +HG  E A ++ + + +
Sbjct: 677 AYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAK 719



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 166/307 (54%), Gaps = 8/307 (2%)

Query: 24  AATKSIAGTKQLHAFIITS-GPLFTHLRSSLVRAYGHVSNVRI---LFDEMSERSSFLYN 79
           +A + +   +Q H F+  +   L   + +SL+  Y    +V     +F  M ER    +N
Sbjct: 329 SALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWN 388

Query: 80  TVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLI 139
           T++  + QNG   + L +   M + G +  D  T   ++ A ++L  +++G   H  ++ 
Sbjct: 389 TMISAFVQNGLDDEGLMLVYEMQKQG-FKIDYITVTALLSAASNLRNKEIGKQTHAFLIR 447

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA--MWEHSVVSWNTLISGYFKNAYAKEAL 197
            G   +  + + LI MY   G ++ ++K+F+     E    +WN++ISGY +N + ++  
Sbjct: 448 QGIQFEG-MNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTF 506

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
           +VF  ML+  + P+  +V S+LPAC  +  +++G+ +H       L +N+   +ALVDMY
Sbjct: 507 LVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMY 566

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
            K G++  A  +F +  ER+ VT+T+MI GY  +G    A+ LF  MQ  G++P+++T  
Sbjct: 567 SKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFV 626

Query: 318 SLLSACS 324
           ++LSACS
Sbjct: 627 AVLSACS 633


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 212/621 (34%), Positives = 342/621 (55%), Gaps = 17/621 (2%)

Query: 52  SLVRAYGHVSNVRILFDEMS---ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN 108
           SL    G ++  + +F+ M    +R    ++ +M  +  NG   D++K+F+  L +G   
Sbjct: 105 SLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMG-LV 163

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITG-FDMDTFVGNCLIAMYMNFGE--VKAA 165
           P++Y Y  VI+AC++  +  +G  + G ++ TG F+ D  VG  LI M++  GE   + A
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVK-GENSFENA 222

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
            KVFD M E +VV+W  +I+   +  + +EA+  F  M+ SG E D  ++ SV  AC  L
Sbjct: 223 YKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAEL 282

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC---GSVNEARLVFDRMSERDVVTWT 282
           + + +GR +H       L  ++    +LVDMY KC   GSV++ R VFDRM +  V++WT
Sbjct: 283 ENLSLGRQLHSWAIRSGLADDVEC--SLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWT 340

Query: 283 SMINGYALNGDV-RNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           ++I GY  N ++   A+ LF  M  +G V PN  T  S   AC ++   + G+ +     
Sbjct: 341 ALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAF 400

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
           K+ L     V  ++I M+ KC+ ++ +   F   S+K  V +N  L G   N     A E
Sbjct: 401 KRGLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFE 460

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
           L  ++    +  +  T  SLL   A +  L++   IH  +++ G      V   LI +YS
Sbjct: 461 LLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYS 520

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           KCGS+++A ++FS +   +++++ W+ +I G+  HG  E  +  F +M + GV+PNEVT+
Sbjct: 521 KCGSIDTASRVFSLM--DNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTY 578

Query: 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
            + L ACSH GL+ EG   FN M E+H+   + +HY C+VDLL RAG L +A++ I TMP
Sbjct: 579 VAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP 638

Query: 581 LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAEN 640
            +    VW   LGAC +H N ELG++AA+ + E +P  P  Y+ LS +Y++  +W+++  
Sbjct: 639 FQADVLVWRTFLGACRVHSNTELGKLAARKILEFDPNEPAAYIQLSNIYASAGKWEESTE 698

Query: 641 VRDVMDEKGLRKAPAHSLIEV 661
           +R  M E+ L K    S IEV
Sbjct: 699 MRRKMKERNLVKEGGCSWIEV 719



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 145/514 (28%), Positives = 253/514 (49%), Gaps = 20/514 (3%)

Query: 101 MLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG 160
           M R G    D+ T+  ++K+C      +LG  +H R++    + D+ + N LI++Y   G
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSG 111

Query: 161 EVKAARKVFDAM---WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVS 217
           ++  A+ VF+ M    +  VVSW+ +++ +  N    +A+ +F   L+ G+ P+     +
Sbjct: 112 DLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTA 171

Query: 218 VLPACGYLKEIEMGRMI-HELVAGGRLGKNIAAWNALVDMYVKC-GSVNEARLVFDRMSE 275
           V+ AC     + +GR+I   L+  G    ++    +L+DM+VK   S   A  VFD+MSE
Sbjct: 172 VIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231

Query: 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
            +VVTWT MI      G  R A+  F  M   G   +  T+ S+ SAC+ L  L  GR L
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGRQL 291

Query: 336 HAWTIKQNLECEVIVETALIDMYAKCNL---VKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           H+W I+  L  +  VE +L+DMYAKC+    V    +VF R      + W A++ G + N
Sbjct: 292 HSWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQN 349

Query: 393 -GLARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
             LA +A+ LF +M+ +  VEPN  T +S   A   ++D +    +  +  + G  S   
Sbjct: 350 CNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSS 409

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           VS  +I ++ KC  +E A   F    + +K++V ++  + G   +   E A  L  E+ +
Sbjct: 410 VSNSVISMFVKCDRMEDARTAFES--LSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAE 467

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC--IVDLLGRAGR 568
             +  +  TF S L   ++ G L +G  + + +L+   +C++     C  ++ +  + G 
Sbjct: 468 RELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQP---VCNALISMYSKCGS 524

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           +D A  +   M  +   + W +++     HG  E
Sbjct: 525 IDTASRVFSLMDNRNVIS-WTSMITGFAKHGFAE 557



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 219/465 (47%), Gaps = 32/465 (6%)

Query: 33  KQLHAFIITSGPLFTHLRSSLVRAY------GHVSNVRILFDEMSERSSFLYNTVMKMYA 86
           +QLH++ I SG L   +  SLV  Y      G V + R +FD M + S   +  ++  Y 
Sbjct: 289 RQLHSWAIRSG-LADDVECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYM 347

Query: 87  QN-GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
           QN   + +++ +F  M+  G   P+++T+    KAC +++  ++G  + G     G   +
Sbjct: 348 QNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASN 407

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
           + V N +I+M++    ++ AR  F+++ E ++VS+NT + G  +N   + A  +   + +
Sbjct: 408 SSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAE 467

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
             +     +  S+L     +  +  G  IH  V    L  N    NAL+ MY KCGS++ 
Sbjct: 468 RELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSIDT 527

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           A  VF  M  R+V++WTSMI G+A +G     L  F  M  EGV+PN +T  ++LSACS 
Sbjct: 528 ASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSH 587

Query: 326 LYYLKRG-RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWN 383
           +  +  G R  ++      ++ ++     ++D+  +  L+  +F+       +   + W 
Sbjct: 588 VGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWR 647

Query: 384 AILAGC-VHNGL------ARKAVELFRQMLVEVVEPND-ATLNSLLPAYAILADLQQAMN 435
             L  C VH+        ARK +E          +PN+ A    L   YA     +++  
Sbjct: 648 TFLGACRVHSNTELGKLAARKILEF---------DPNEPAAYIQLSNIYASAGKWEESTE 698

Query: 436 IHCY-----LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           +        L++ G  S +EV   +   Y    S  +AH+I+ E+
Sbjct: 699 MRRKMKERNLVKEGGCSWIEVGDKVHKFYVGDTSHPNAHQIYDEL 743



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 157/314 (50%), Gaps = 23/314 (7%)

Query: 292 GDVRNALGLFQLMQFEGVRP-NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           GD+R A+    LM  +G+RP +S+T  SLL +C    + + G+ +HA  I+  +E + ++
Sbjct: 40  GDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVL 99

Query: 351 ETALIDMYAKC-NLVKLS--FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
             +LI +Y+K  +L K    F+   R  K+  V W+A++A   +NG    A++LF + L 
Sbjct: 100 YNSLISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLE 159

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG-FLSVVEVSTGLIDIYSKC-GSL 465
             + PND    +++ A +    +     I  +L++ G F S V V   LID++ K   S 
Sbjct: 160 MGLVPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSF 219

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
           E+A+K+F +  + + ++V W+++I      G    A+  F +MV SG + ++ T +S   
Sbjct: 220 ENAYKVFDK--MSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFS 277

Query: 526 ACSHGGLLDEGLDLFNFM----LENHQTCSRADHYT-CIVDLLGRAGRLDEAYDLIRTMP 580
           AC+    L  G  L ++     L +   CS  D Y  C  D     G +D+   +   M 
Sbjct: 278 ACAELENLSLGRQLHSWAIRSGLADDVECSLVDMYAKCSAD-----GSVDDCRKVFDRM- 331

Query: 581 LKPTHAV--WGALL 592
               H+V  W AL+
Sbjct: 332 --QDHSVMSWTALI 343


>gi|356506341|ref|XP_003521943.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Glycine max]
          Length = 895

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 217/667 (32%), Positives = 360/667 (53%), Gaps = 23/667 (3%)

Query: 7   HTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPL-FTHLRSSLVRAY---GHVSN 62
           H+L     + + L  +    +S  G  Q+H F + SG + F  + +SL++ Y   G+   
Sbjct: 72  HSLENVDEVTVALSLKACQGESKLGC-QIHGFAVCSGFVSFVTVSNSLMKMYCKSGNFGK 130

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG-EYNPDNYTYPIVIKAC 121
             I+F+ +S      +NTV+  + +   S D+L     M   G  ++P  YT  +    C
Sbjct: 131 ALIVFENLSHPDIVSWNTVLSGFEE---SVDALNFARSMHYCGIAFDPVTYTSALAF--C 185

Query: 122 TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWN 181
                   G  LH  V+  G   + F+GN L+ MY  +G +  AR+VFD M E  +VSWN
Sbjct: 186 WGDHGFLFGWQLHSLVVKCGLGCEVFIGNALVTMYSRWGMLDEARRVFDEMPERDLVSWN 245

Query: 182 TLISGYFKNA--YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
            +ISGY +    Y  EA+++F  M++ G+  D  S+   + ACG++K +E+GR IH L  
Sbjct: 246 AMISGYAQEGKCYGLEAVLLFVNMVRHGMLIDHVSLTGAVSACGHMKNLELGRQIHGLTQ 305

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
               G +++  N L+  Y KC    +A+ VF+ +S R+VV+WT+MI+      D  +A+ 
Sbjct: 306 KVGYGTHVSVCNVLMSTYSKCEVPKDAKAVFESISNRNVVSWTTMISI-----DEEDAVS 360

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           LF  M+  GV PN +T   L+ A +    +  G ++H   IK     E  V  + I MYA
Sbjct: 361 LFNAMRVNGVYPNDVTFIGLIHAVTIRNLVTEGLTIHGLCIKSCFLSEQTVSNSFITMYA 420

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           K   ++ S ++F   + ++TV WNA+++G   NG  ++A+  +   + E+ +PN  T  S
Sbjct: 421 KFECIQESTKIFEELNCRETVSWNALISGYAQNGSYKEALLTYLSAVKEI-KPNQYTFGS 479

Query: 420 LLPAYAILAD--LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +L A A   D  L    + H +L++ G  +   VS  L+D+Y K G +  + ++F+E   
Sbjct: 480 VLNAIAAAEDISLNHGKSCHSHLLKLGLGTDPIVSGALLDMYGKRGDIIESQRVFNET-- 537

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            ++    W+ II+ Y  HG  E+ +SL+ EM + G+ P+ +TF S L AC   G++D G 
Sbjct: 538 LERTQFAWTAIISAYARHGDFESVMSLYTEMEREGINPDSITFLSVLAACCRKGMVDAGH 597

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
            +F+ M++ H     ++HY+ +VD+LGR GRLDEA +L+  +P  P  +V  +LLG+C +
Sbjct: 598 RVFDSMVKKHSIEPTSEHYSIMVDMLGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCRL 657

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           HGN+E+ E     L E++P + G YVL++ LY+   +W+    VR  M  +G++K    S
Sbjct: 658 HGNMEMAEKVVGRLIEMDPASSGPYVLMANLYAEKGKWEKVAEVRRGMRGRGVKKEVGFS 717

Query: 658 LIEVRNI 664
            ++V N+
Sbjct: 718 WVDVSNV 724


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 206/599 (34%), Positives = 328/599 (54%), Gaps = 9/599 (1%)

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
           S R    ++ ++  +A N     +L  F+ M+  G Y P+ Y +    +AC+   +  +G
Sbjct: 129 SSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYY-PNEYCFAAATRACSTAEFVSVG 187

Query: 131 IALHGRVLITGF-DMDTFVGNCLIAMYMN-FGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
            ++ G V+ TG+   D  VG  LI M++   G++ +A KVF+ M E + V+W  +I+   
Sbjct: 188 DSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLM 247

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           +  YA EA+ +F  M+ SG EPD  ++  V+ AC  ++ + +G+ +H       L  +  
Sbjct: 248 QFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRC 307

Query: 249 AWNALVDMYVKC---GSVNEARLVFDRMSERDVVTWTSMINGYALNGDV-RNALGLFQLM 304
               L++MY KC   GS+  AR +FD++ + +V +WT+MI GY   G     AL LF+ M
Sbjct: 308 VGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGM 367

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
               V PN  T  S L AC++L  L+ G  +    +K        V  +LI MYA+   +
Sbjct: 368 ILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRI 427

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
             + + F    +K  + +N ++     N  + +A+ELF ++  + +  +  T  SLL   
Sbjct: 428 DDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGA 487

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           A +  + +   IH  +I+ G      V   LI +YS+CG++ESA ++F ++  +D++++ 
Sbjct: 488 ASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDM--EDRNVIS 545

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+ II G+  HG    A+ LF +M++ GV+PNEVT+ + L ACSH GL++EG   F  M 
Sbjct: 546 WTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMY 605

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
             H    R +HY CIVD+LGR+G L EA   I +MP K    VW   LGAC +HGN+ELG
Sbjct: 606 TEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELG 665

Query: 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           + AAK + E EP +P  Y+LLS LY+++ +W +  N+R  M EK L K    S +EV N
Sbjct: 666 KHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVEN 724



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 147/477 (30%), Positives = 253/477 (53%), Gaps = 15/477 (3%)

Query: 35  LHAFIITSGPLFTH------LRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +  F+I +G L +       L    V+  G + +   +F++M ER++  +  ++    Q 
Sbjct: 190 IFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQF 249

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G + +++ +FL M+  G Y PD +T   VI AC ++    LG  LH + +  G  +D  V
Sbjct: 250 GYAGEAIDLFLDMIFSG-YEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCV 308

Query: 149 GNCLIAMYMNF---GEVKAARKVFDAMWEHSVVSWNTLISGYF-KNAYAKEALVVFDWML 204
           G CLI MY      G + AARK+FD + +H+V SW  +I+GY  K  Y +EAL +F  M+
Sbjct: 309 GCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMI 368

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSV 263
            + V P+  +  S L AC  L  + +G  +    V  G    N  A N+L+ MY + G +
Sbjct: 369 LTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVA-NSLISMYARSGRI 427

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
           ++AR  FD + E++++++ ++I+ YA N +   AL LF  ++ +G+  ++ T  SLLS  
Sbjct: 428 DDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGA 487

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
           +S+  + +G  +HA  IK  L+    V  ALI MY++C  ++ +FQVF     +  + W 
Sbjct: 488 ASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWT 547

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA-MNIHCYLIR 442
           +I+ G   +G A +A+ELF +ML E V PN+ T  ++L A + +  + +   +       
Sbjct: 548 SIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTE 607

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           +G +  +E    ++DI  + GSL  A +  + +P K  D +VW   +    +HG+ E
Sbjct: 608 HGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYK-ADALVWRTFLGACRVHGNLE 663



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 141/525 (26%), Positives = 255/525 (48%), Gaps = 22/525 (4%)

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
            NG  H ++     M+  G + PD  TY + +K C       +G  +H ++  +   +D+
Sbjct: 43  NNGRLHKAISTLEHMVHQGSH-PDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMW-EHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
              N LI++Y   G+ + A  +F  M     ++SW+ ++S +  N     AL+ F  M++
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELV-AGGRLGKNIAAWNALVDMYVKC-GSV 263
           +G  P+     +   AC   + + +G  I   V   G L  ++     L+DM+VK  G +
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDL 221

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
             A  VF++M ER+ VTWT MI      G    A+ LF  M F G  P+  T+  ++SAC
Sbjct: 222 VSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISAC 281

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL---VKLSFQVFARTSKKKTV 380
           +++  L  G+ LH+  I+  L  +  V   LI+MYAKC++   +  + ++F +       
Sbjct: 282 ANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVF 341

Query: 381 PWNAILAGCVHN-GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
            W A++ G V   G   +A++LFR M++  V PN  T +S L A A LA L+    +  +
Sbjct: 342 SWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTH 401

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            ++ GF SV  V+  LI +Y++ G ++ A K F    + +K+++ ++ +I  Y  + + E
Sbjct: 402 AVKLGFSSVNCVANSLISMYARSGRIDDARKAFD--ILFEKNLISYNTVIDAYAKNLNSE 459

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE-----NHQTCSRAD 554
            A+ LF E+   G+  +  TF S L   +  G + +G  +   +++     N   C+   
Sbjct: 460 EALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCN--- 516

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
               ++ +  R G ++ A+ +   M  +   + W +++     HG
Sbjct: 517 ---ALISMYSRCGNIESAFQVFEDMEDRNVIS-WTSIITGFAKHG 557



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 128/431 (29%), Positives = 214/431 (49%), Gaps = 20/431 (4%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGA-SHDSLKMFLGMLRLGEYNPDNYTYPI 116
           G +   R +FD++ + + F +  ++  Y Q G    ++L +F GM+ L    P+++T+  
Sbjct: 323 GSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMI-LTHVIPNHFTFSS 381

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
            +KAC +LA  ++G  +    +  GF     V N LI+MY   G +  ARK FD ++E +
Sbjct: 382 TLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKN 441

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           ++S+NT+I  Y KN  ++EAL +F+ +   G+     +  S+L     +  I  G  IH 
Sbjct: 442 LISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHA 501

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            V    L  N +  NAL+ MY +CG++  A  VF+ M +R+V++WTS+I G+A +G    
Sbjct: 502 RVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQ 561

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG-RSLHAWTIKQNLECEVIVETALI 355
           AL LF  M  EGVRPN +T  ++LSACS +  +  G +   +   +  +   +     ++
Sbjct: 562 ALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIV 621

Query: 356 DMYAKCNLVKLSFQ-VFARTSKKKTVPWNAILAGC-VHNGLARKAVELFR---QMLVEVV 410
           D+  +   +  + Q + +   K   + W   L  C VH  L     EL +   +M++E  
Sbjct: 622 DILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNL-----ELGKHAAKMIIE-Q 675

Query: 411 EPNDATLNSLLPA-YAILADLQQAMNI-----HCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           EP+D     LL   YA ++   +  NI        LI+    S VEV   +   Y    S
Sbjct: 676 EPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTS 735

Query: 465 LESAHKIFSEI 475
              A +I+ E+
Sbjct: 736 HPKAAEIYDEL 746


>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
 gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
          Length = 1029

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 206/637 (32%), Positives = 346/637 (54%), Gaps = 8/637 (1%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+HA  +  G      + SSL+  Y   G +S+ + +FD  +E++  ++N ++  + QN
Sbjct: 347 QQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQN 406

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
               ++++MF  M R  +   D++T+  V+ AC +L    +G  +H   +    D D FV
Sbjct: 407 DLQEETIQMFQYMRR-ADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFV 465

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N ++ MY   G +  A+ +F  +     VSWN LI G   N   +EA+ +   M   G+
Sbjct: 466 ANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGI 525

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            PD  S  + + AC  ++  E G+ IH       +  N A  ++L+D+Y K G V  +R 
Sbjct: 526 APDEVSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRK 585

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           V   +    +V   ++I G   N     A+ LFQ +  +G +P++ T  S+LS C+    
Sbjct: 586 VLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVS 645

Query: 329 LKRGRSLHAWTIKQNL-ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT-VPWNAIL 386
              G+ +H++T+K  L   +  +  +L+ +Y KC L++ + ++ A     K  V W A +
Sbjct: 646 SVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATI 705

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           +G   NG + +++ +F +M    V  ++AT  S+L A + +A L     IH  +I+ GF+
Sbjct: 706 SGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFV 765

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           S    ++ L+D+YSKCG + S+ +IF E+  K ++I+ W+ +I G+  +G+   A+ LF+
Sbjct: 766 SYETAASALMDMYSKCGDVISSFEIFKELKNK-QNIMPWNSMIVGFAKNGYANEALLLFQ 824

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           +M +S ++P+EVT    L ACSH GL+ EG +LF+ M + +    R DHY C++DLLGR 
Sbjct: 825 KMQESQLKPDEVTLLGVLIACSHAGLISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGRG 884

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           G L EA ++I  +P +    +W   L AC +H + E G+VAAK L E+EP+    YV LS
Sbjct: 885 GHLQEAQEVIDQLPFRADGVIWATFLAACQMHKDEERGKVAAKKLVEMEPQRSSTYVFLS 944

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            L++A   W +A+  R+ M EKG+ K P  S I V N
Sbjct: 945 SLHAAAGNWVEAKVAREAMREKGVMKFPGCSWITVGN 981



 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 149/546 (27%), Positives = 290/546 (53%), Gaps = 12/546 (2%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           S + + G +S+ R L   +   S+  +N V+  Y+Q+G   +   ++  M R G   P  
Sbjct: 269 STLASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQG-LMPTR 327

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T+  ++ A   +     G  +H   +  G D + FVG+ LI +Y+  G +  A+KVFD 
Sbjct: 328 STFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDF 387

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
             E ++V WN ++ G+ +N   +E + +F +M ++ +E D  + VSVL AC  L  +++G
Sbjct: 388 STEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIG 447

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           R +H +     +  ++   NA++DMY K G+++ A+ +F  +  +D V+W ++I G A N
Sbjct: 448 RQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHN 507

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
            +   A+ + + M+  G+ P+ ++  + ++ACS++   + G+ +H  +IK N+     V 
Sbjct: 508 EEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVG 567

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
           ++LID+Y+K   V+ S +V A       VP NA++ G V N    +A+ELF+Q+L +  +
Sbjct: 568 SSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFK 627

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV-VEVSTGLIDIYSKCGSLESAHK 470
           P++ T  S+L              +H Y ++   L+    +   L+ IY KC  LE A+K
Sbjct: 628 PSNFTFASILSGCTGPVSSVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANK 687

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           + +E+P   K++V W+  I+GY  +G+ + ++ +F  M    V+ +E TF S L ACS  
Sbjct: 688 LLAEVP-DHKNLVEWTATISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACSEI 746

Query: 531 GLLDEGLDLFNFMLE----NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
             L +G ++   +++    +++T + A     ++D+  + G +  ++++ + +  K    
Sbjct: 747 AALTDGKEIHGLIIKSGFVSYETAASA-----LMDMYSKCGDVISSFEIFKELKNKQNIM 801

Query: 587 VWGALL 592
            W +++
Sbjct: 802 PWNSMI 807



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 158/578 (27%), Positives = 271/578 (46%), Gaps = 54/578 (9%)

Query: 5   SHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNV 63
           +HH    T H           T        LHA ++  G PL   L  +LV  YG    V
Sbjct: 58  AHHPFDATPH----------RTHQARACGVLHARVLRLGLPLRGRLGDALVDLYGRSGRV 107

Query: 64  RILFDEMS-----ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
              +  +        S    ++V+  +A++G+  D L  F  +       PD +   +V+
Sbjct: 108 GYAWRALGCCTGAPASGAAASSVLSCHARSGSPRDVLDAFQRLRCSIGGTPDQFGLAVVL 167

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
            AC+ L   + G  +H  VL +GF    F    L+ MY    EVK AR+VFD +     +
Sbjct: 168 SACSRLGALEQGRQVHCDVLKSGFCSSAFCQAGLVDMYAKCVEVKDARRVFDGIACPDTI 227

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
            W ++I+GY +    ++AL +F  M K G  PD  + V++               I  L 
Sbjct: 228 CWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVTI---------------ISTLA 272

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
           + GRL                    ++AR +  R+     V W ++I+ Y+ +G      
Sbjct: 273 SMGRL--------------------SDARTLLKRIQMPSTVAWNAVISSYSQSGLESEVF 312

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
           GL++ M+ +G+ P   T  S+LSA +S+     G+ +HA  +K  L+  V V ++LI++Y
Sbjct: 313 GLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLY 372

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
            K   +  + +VF  +++K  V WNA+L G V N L  + +++F+ M    +E +D T  
Sbjct: 373 VKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFV 432

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           S+L A   L  L     +HC  I+    + + V+  ++D+YSK G+++ A  +FS IP  
Sbjct: 433 SVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIP-- 490

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
            KD V W+ +I G   +   E AV + K M   G+ P+EV+F +A++ACS+    + G  
Sbjct: 491 GKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETGKQ 550

Query: 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
           +    ++ +  CS     + ++DL  + G ++ +  ++
Sbjct: 551 IHCASIK-YNVCSNHAVGSSLIDLYSKFGDVESSRKVL 587



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 120/455 (26%), Positives = 230/455 (50%), Gaps = 7/455 (1%)

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           S+F    ++ MYA+     D+ ++F G+       PD   +  +I     +   +  +AL
Sbjct: 194 SAFCQAGLVDMYAKCVEVKDARRVFDGIA-----CPDTICWASMIAGYHRVGRYQQALAL 248

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
             R+   G   D      +I+   + G +  AR +   +   S V+WN +IS Y ++   
Sbjct: 249 FSRMEKMGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLE 308

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
            E   ++  M + G+ P  ++  S+L A   +   + G+ IH       L  N+   ++L
Sbjct: 309 SEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSL 368

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           +++YVK G +++A+ VFD  +E+++V W +M+ G+  N      + +FQ M+   +  + 
Sbjct: 369 INLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADD 428

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            T  S+L AC +L  L  GR +H  TIK +++ ++ V  A++DMY+K   + ++  +F+ 
Sbjct: 429 FTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSL 488

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
              K +V WNA++ G  HN    +AV + ++M    + P++ +  + + A + +   +  
Sbjct: 489 IPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETG 548

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             IHC  I+Y   S   V + LID+YSK G +ES+ K+ + +      +V  + +I G  
Sbjct: 549 KQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDA--SSMVPINALITGLV 606

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            +   + A+ LF+++++ G +P+  TF S L  C+
Sbjct: 607 QNNREDEAIELFQQVLKDGFKPSNFTFASILSGCT 641


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 203/600 (33%), Positives = 322/600 (53%), Gaps = 72/600 (12%)

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H R+L +G   D ++   LIA Y N+     A  +  ++ + +V S+++LI    K    
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLF 97

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
            +++ VF  M   G+ PD   + ++   C  L   + G+ IH +     L  +     +L
Sbjct: 98  SQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSL 157

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV------------------- 294
             MY++CG + +AR VFDRMSE+DVVT ++++ GYA  G +                   
Sbjct: 158 FHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNI 217

Query: 295 ----------------RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
                           + A+ +FQ M   G  P+ +T+ S+L +      L  GR +H +
Sbjct: 218 VSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGY 277

Query: 339 TIKQNLECEVIVETALIDMYAK---------------------CN----------LVKLS 367
            IKQ L  +  V +A++DMY K                     CN          LV  +
Sbjct: 278 VIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKA 337

Query: 368 FQVFARTSKKK----TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
            ++F    ++K     V W +I+AGC  NG   +A+ELFR+M V  V+PN  T+ S+LPA
Sbjct: 338 LEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPA 397

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
              +A L    + H + +R   L  V V + LID+Y+KCG ++ +  +F+ +P K+  +V
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKN--LV 455

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ ++ GY MHG  +  +S+F+ ++++ ++P+ ++FTS L AC   GL DEG   FN M
Sbjct: 456 CWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMM 515

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
            E +    R +HY+C+V+LLGRAG+L EAYDLI+ +P +P   VWGALL +C +  NV+L
Sbjct: 516 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDL 575

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            E+AA+ LF LEPENPG YVL+S +Y+A   W + +++R+ M+  GL+K P  S I+V+N
Sbjct: 576 AEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKN 635



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 153/533 (28%), Positives = 248/533 (46%), Gaps = 77/533 (14%)

Query: 32  TKQLHAFIITSGPLFT-HLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           T Q HA I+ SG     ++ + L+ +Y +    ++  ++   + + + + +++++    +
Sbjct: 34  TTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTK 93

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
                 S+ +F  M   G   PD +  P + K C +L+  K G  +H    ++G DMD F
Sbjct: 94  AKLFSQSIGVFSRMFSHGLI-PDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAF 152

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSV------------------------------ 177
           V   L  MYM  G +  ARKVFD M E  V                              
Sbjct: 153 VQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSG 212

Query: 178 -----VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
                VSWN ++SG+ ++ Y KEA+++F  M   G  PD  +V SVLP+ G  + + MGR
Sbjct: 213 IEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGR 272

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS------------------ 274
            IH  V    L K+    +A++DMY K G V     +FD                     
Sbjct: 273 QIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNG 332

Query: 275 -----------------ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
                            E +VV+WTS+I G A NG    AL LF+ MQ  GV+PN +TI 
Sbjct: 333 LVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIP 392

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           S+L AC ++  L  GRS H + ++ +L  +V V +ALIDMYAKC  +K+S  VF     K
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTK 452

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V WN+++ G   +G A++ + +F  ++   ++P+  +  SLL A   +    +     
Sbjct: 453 NLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512

Query: 438 CYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
             +   YG    +E  + ++++  + G L+ A+ +  EIP  + D  VW  ++
Sbjct: 513 NMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPF-EPDSCVWGALL 564



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 113/464 (24%), Positives = 197/464 (42%), Gaps = 87/464 (18%)

Query: 7   HTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSN 62
           H L   TH++  L +  A   +    KQ+H     SG  +   ++ SL   Y   G + +
Sbjct: 110 HGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGD 169

Query: 63  VRILFDEMSER-----SSFL------------------------------YNTVMKMYAQ 87
            R +FD MSE+     S+ L                              +N ++  + +
Sbjct: 170 ARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNR 229

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           +G   +++ MF  M  LG + PD  T   V+ +  D     +G  +HG V+  G   D  
Sbjct: 230 SGYHKEAVIMFQKMHHLG-FCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKC 288

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAM----------------------------------- 172
           V + ++ MY   G V    K+FD                                     
Sbjct: 289 VISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQK 348

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
            E +VVSW ++I+G  +N    EAL +F  M  +GV+P+  ++ S+LPACG +  +  GR
Sbjct: 349 MELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGR 408

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
             H       L  ++   +AL+DMY KCG +  +++VF+ M  +++V W S++NGY+++G
Sbjct: 409 STHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHG 468

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
             +  + +F+ +    ++P+ ++  SLLSAC  +     G +   W     +  E  ++ 
Sbjct: 469 KAKEVMSIFESLMRTRLKPDFISFTSLLSACGQV-----GLTDEGWKYFNMMSEEYGIKP 523

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVP-------WNAILAGC 389
            L       NL+  + ++       K +P       W A+L  C
Sbjct: 524 RLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSC 567



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 134/266 (50%), Gaps = 5/266 (1%)

Query: 66  LFDEMS-ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           LF E   E +   + +++   AQNG   ++L++F  M ++    P+  T P ++ AC ++
Sbjct: 343 LFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREM-QVAGVKPNRVTIPSMLPACGNI 401

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
           A    G + HG  +      D  VG+ LI MY   G +K ++ VF+ M   ++V WN+L+
Sbjct: 402 AALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLM 461

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRL 243
           +GY  +  AKE + +F+ ++++ ++PD  S  S+L ACG +   + G +  + +     +
Sbjct: 462 NGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGI 521

Query: 244 GKNIAAWNALVDMYVKCGSVNEA-RLVFDRMSERDVVTWTSMINGYALNGDVRNA-LGLF 301
              +  ++ +V++  + G + EA  L+ +   E D   W +++N   L  +V  A +   
Sbjct: 522 KPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQ 581

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLY 327
           +L   E   P +  + S + A   ++
Sbjct: 582 KLFHLEPENPGTYVLMSNIYAAKGMW 607


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  365 bits (938), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 196/506 (38%), Positives = 301/506 (59%), Gaps = 15/506 (2%)

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           K FD      V SWN+LI+   +   + E+L  F WM K  ++P+ ++    + +C  L 
Sbjct: 40  KYFD---RTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
           ++  G+  H+         ++   +AL+DMY KCG ++ AR++FD +  R++VTWTS+I 
Sbjct: 97  DLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLIT 156

Query: 287 GYALNGDVRNALGLFQLMQFE---------GVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
           GY  N D   AL +F+   FE         G   +S+ + S+LSACS +        +H 
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHG 216

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
             IK  L+  + VE  L+D YAKC  V LS +VF   ++K  V WN+++A    NGL+  
Sbjct: 217 VAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTD 276

Query: 398 AVELFRQML-VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLI 456
           A E+F  ML     + N+ TL++LL A A    L+  M +H  +I+ G+++ V ++T +I
Sbjct: 277 AFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSII 336

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
           D+Y KCG  E A   F    +K+K++  W+ +IAGYGMHG    A+ +F +M+ +GV+PN
Sbjct: 337 DMYCKCGQAEMARNAFD--GMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPN 394

Query: 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
            +TF S L ACSH G L+EG   FN M   +      +HY C+VDLLGRAG + EAY+LI
Sbjct: 395 YITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLI 454

Query: 577 RTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWK 636
           ++M ++    +WG+LL AC IH +VEL E++A+ LF+L+P N G YVLL+ +Y+   RWK
Sbjct: 455 KSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWK 514

Query: 637 DAENVRDVMDEKGLRKAPAHSLIEVR 662
           D E +R ++ ++GL K P +SL+E++
Sbjct: 515 DVERMRILVKDRGLVKPPGYSLVELK 540



 Score =  229 bits (583), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 151/467 (32%), Positives = 251/467 (53%), Gaps = 28/467 (5%)

Query: 61  SNVRILFDEMSERSS-FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           +N+  LF++  +R+  + +N+++   A+ G S +SL+ F  M +L +  P+  T+P  IK
Sbjct: 32  TNLTTLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKL-DIKPNRSTFPCAIK 90

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           +C+ L     G   H + L+ GF+ D FV + LI MY   G++  AR +FD +   ++V+
Sbjct: 91  SCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVT 150

Query: 180 WNTLISGYFKNAYAKEALVVFDWML---------KSGVEPDCASVVSVLPACGYLKEIEM 230
           W +LI+GY +N  A EAL+VF   L         + G   D  +++SVL AC  +    +
Sbjct: 151 WTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAV 210

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
              +H +     L K +   N L+D Y KCG V+ +R VFD M+E+DVV+W SMI  YA 
Sbjct: 211 SEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQ 270

Query: 291 NGDVRNALGLFQ-LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
           NG   +A  +F  +++  G + N +T+ +LL AC+    L+ G  LH   IK      VI
Sbjct: 271 NGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVI 330

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           + T++IDMY KC   +++   F    +K    W A++AG   +G AR+A+++F QM+   
Sbjct: 331 MATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAG 390

Query: 410 VEPNDATLNSLLPAYAILADLQQ------AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
           V+PN  T  S+L A +    L++      AM+ H Y +  G    VE    ++D+  + G
Sbjct: 391 VKPNYITFISVLAACSHAGFLEEGWRWFNAMS-HEYNVEPG----VEHYGCMVDLLGRAG 445

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE----TAVSLFK 506
            ++ A+ +   + ++ +D V+W  ++A   +H   E    +A  LFK
Sbjct: 446 YIKEAYNLIKSMKVR-RDFVLWGSLLAACRIHKDVELAEISARELFK 491



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/421 (30%), Positives = 216/421 (51%), Gaps = 30/421 (7%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY--- 57
           P+  T P         ++  +A   +   KQ H   +  G    LF  + S+L+  Y   
Sbjct: 80  PNRSTFPCA-------IKSCSALFDLNSGKQAHQQALVFGFESDLF--VSSALIDMYSKC 130

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGML-RLGEYNP------- 109
           G +SN R+LFDE+  R+   + +++  Y QN  +H++L +F   L    E N        
Sbjct: 131 GKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSV 190

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           D+     V+ AC+ ++ + +   +HG  +  G D    V N L+  Y   GEV  +RKVF
Sbjct: 191 DSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVF 250

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEI 228
           D M E  VVSWN++I+ Y +N  + +A  VF  MLK+ G + +  ++ ++L AC +   +
Sbjct: 251 DDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGAL 310

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
            +G  +H+ V       N+    +++DMY KCG    AR  FD M E++V +WT+MI GY
Sbjct: 311 RVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGY 370

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG-RSLHAWTIKQNLECE 347
            ++G  R AL +F  M + GV+PN +T  S+L+ACS   +L+ G R  +A + + N+E  
Sbjct: 371 GMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPG 430

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGC-VHNGLAR---KAVELF 402
           V     ++D+  +   +K ++ +      ++  V W ++LA C +H  +      A ELF
Sbjct: 431 VEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELF 490

Query: 403 R 403
           +
Sbjct: 491 K 491


>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
 gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
          Length = 766

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 210/661 (31%), Positives = 348/661 (52%), Gaps = 18/661 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLF--------THLRSSLVRAYGHVS---NVRILF 67
           LV   +  +S+   +++H  ++ S            T L + L+  YG  +   + R +F
Sbjct: 50  LVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQVF 109

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           DEM  R+   + +V+  + QNG + D+L +F  MLR G    D +     ++ACT+L   
Sbjct: 110 DEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGT-AADQFALGSAVRACTELGDV 168

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
             G  +H   L +    D  V N L+ MY   G V     +F+ + +  ++SW ++I+G+
Sbjct: 169 GTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGF 228

Query: 188 FKNAYAKEALVVFDWMLKSGVE-PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
            +  +  EAL VF  M+  G   P+     S   ACG +   E G  IH L    RL ++
Sbjct: 229 AQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRD 288

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           +    +L DMY +C +++ AR+ F R+   D+V+W S++N Y++ G +  AL LF  M+ 
Sbjct: 289 LYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRD 348

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
            G+RP+ +T+  LL AC     L  GR +H++ +K  L+ +V V  +L+ MYA+C+ +  
Sbjct: 349 SGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSS 408

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP--NDATLNSLLPAY 424
           +  VF     +  V WN+IL  C  +    + ++LF   L+   EP  +  +LN++L A 
Sbjct: 409 AMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFS--LLNKSEPSLDRISLNNVLSAS 466

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           A L   +    +H Y  + G +    +S  LID Y+KCGSL+ A ++F EI   ++D+  
Sbjct: 467 AELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLF-EIMGNNRDVFS 525

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           WS +I GY   G+ + A  LF  M   G++PN VTF   L ACS  G ++EG   ++ M 
Sbjct: 526 WSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIME 585

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
             +      +H +CIVDLL RAG+L EA + I  MP +P   +W  LL A  +H ++E+G
Sbjct: 586 PEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMG 645

Query: 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
           + AA+ +  ++P +   YVLL  +Y+A   W +   ++  M   G++K+P  S ++++  
Sbjct: 646 KRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGE 705

Query: 665 L 665
           L
Sbjct: 706 L 706


>gi|356533824|ref|XP_003535458.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 630

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 201/561 (35%), Positives = 316/561 (56%), Gaps = 22/561 (3%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           +++ C DL  +KL    H ++L  GF  + F+   L++ Y   GE+  +R VF+++   S
Sbjct: 34  LLQLCIDLRSQKLAQQSHAQILANGFAQNAFLATRLVSAYATCGELATSRFVFESVEAKS 93

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V  WN+LI+GY KN   ++AL +F  M ++G+ PD  ++ +V    G L+++  G++IH 
Sbjct: 94  VYLWNSLINGYVKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVSGKLIHG 153

Query: 237 LVAGGRLG--KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING------- 287
              G R+G   ++   N+L+ MY +CG   +A  VFD    R+V ++  +I+G       
Sbjct: 154 --KGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVVISGCAALENC 211

Query: 288 -YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS-ACSSLYYLKRGRSLHAWTIKQNLE 345
            +  + D+ N    F  MQ EG + ++ T+ SLL   C        GR LH + +K  L+
Sbjct: 212 NFTSHDDLSN---FFLRMQCEGFKADAFTVASLLPVCCGDTGKWDYGRELHCYVVKNGLD 268

Query: 346 ----CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVEL 401
                +V + ++LIDMY++   V L  +VF +   +    W A++ G V NG    A+ L
Sbjct: 269 LKMDSDVHLGSSLIDMYSRSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGAPDDALVL 328

Query: 402 FRQM-LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
            R M + + + PN  +L S LPA  +LA L     IH + I+      V +   LID+YS
Sbjct: 329 LRAMQMKDGIRPNKVSLISALPACGLLAGLIGGKQIHGFSIKMELNDDVSLCNALIDMYS 388

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           KCGSL+ A + F E     KD + WS +I+ YG+HG GE A+  + +M+Q G +P+ +T 
Sbjct: 389 KCGSLDYARRAF-ETSSYFKDAITWSSMISAYGLHGRGEEAIIAYYKMLQQGFKPDMITV 447

Query: 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
              L ACS  GL+DEG+ ++  ++  ++     +   C+VD+LGR+G+LD+A + I+ MP
Sbjct: 448 VGVLSACSKSGLVDEGISIYKSLMTKYEIKPTVEICACVVDMLGRSGQLDQALEFIKEMP 507

Query: 581 LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAEN 640
           L P  +VWG+LL A VIHGN    ++A + L ELEPENP NY+ LS  Y++ RRW     
Sbjct: 508 LDPGPSVWGSLLTASVIHGNSRTRDLAYRHLLELEPENPSNYISLSNTYASDRRWDVVTE 567

Query: 641 VRDVMDEKGLRKAPAHSLIEV 661
           VR +M E+GL+K P  S I +
Sbjct: 568 VRTIMKERGLKKVPGCSWITI 588



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 154/520 (29%), Positives = 268/520 (51%), Gaps = 19/520 (3%)

Query: 8   TLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNV 63
           +L  T   ++ L+Q     +S    +Q HA I+ +G      L + LV AY   G ++  
Sbjct: 23  SLAHTPQSLLHLLQLCIDLRSQKLAQQSHAQILANGFAQNAFLATRLVSAYATCGELATS 82

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
           R +F+ +  +S +L+N+++  Y +N     +L +F  M R G   PD+YT   V K   +
Sbjct: 83  RFVFESVEAKSVYLWNSLINGYVKNHDFRQALALFREMGRNGML-PDDYTLATVFKVFGE 141

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
           L     G  +HG+ +  GF  D  VGN L++MY   GE   A KVFD     +V S+N +
Sbjct: 142 LEDLVSGKLIHGKGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVV 201

Query: 184 ISGYFK----NAYAKEALVVFDWMLK-SGVEPDCASVVSVLP-ACGYLKEIEMGRMIHEL 237
           ISG       N  + + L  F   ++  G + D  +V S+LP  CG   + + GR +H  
Sbjct: 202 ISGCAALENCNFTSHDDLSNFFLRMQCEGFKADAFTVASLLPVCCGDTGKWDYGRELHCY 261

Query: 238 VAGG----RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           V       ++  ++   ++L+DMY +   V   R VFD+M  R+V  WT+MINGY  NG 
Sbjct: 262 VVKNGLDLKMDSDVHLGSSLIDMYSRSKKVVLGRRVFDQMKNRNVYVWTAMINGYVQNGA 321

Query: 294 VRNALGLFQLMQF-EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
             +AL L + MQ  +G+RPN +++ S L AC  L  L  G+ +H ++IK  L  +V +  
Sbjct: 322 PDDALVLLRAMQMKDGIRPNKVSLISALPACGLLAGLIGGKQIHGFSIKMELNDDVSLCN 381

Query: 353 ALIDMYAKCNLVKLSFQVFARTSK-KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
           ALIDMY+KC  +  + + F  +S  K  + W+++++    +G   +A+  + +ML +  +
Sbjct: 382 ALIDMYSKCGSLDYARRAFETSSYFKDAITWSSMISAYGLHGRGEEAIIAYYKMLQQGFK 441

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           P+  T+  +L A +    + + ++I+  L+ +Y     VE+   ++D+  + G L+ A +
Sbjct: 442 PDMITVVGVLSACSKSGLVDEGISIYKSLMTKYEIKPTVEICACVVDMLGRSGQLDQALE 501

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
              E+P+ D    VW  ++    +HG+  T    ++ +++
Sbjct: 502 FIKEMPL-DPGPSVWGSLLTASVIHGNSRTRDLAYRHLLE 540



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 192/411 (46%), Gaps = 26/411 (6%)

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           S++ +L  C  L+  ++ +  H  +      +N      LV  Y  CG +  +R VF+ +
Sbjct: 30  SLLHLLQLCIDLRSQKLAQQSHAQILANGFAQNAFLATRLVSAYATCGELATSRFVFESV 89

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
             + V  W S+INGY  N D R AL LF+ M   G+ P+  T+ ++      L  L  G+
Sbjct: 90  EAKSVYLWNSLINGYVKNHDFRQALALFREMGRNGMLPDDYTLATVFKVFGELEDLVSGK 149

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV--- 390
            +H   I+     +V+V  +L+ MY +C     + +VF  T  +    +N +++GC    
Sbjct: 150 LIHGKGIRIGFVSDVVVGNSLMSMYCRCGEFGDAVKVFDETPHRNVGSFNVVISGCAALE 209

Query: 391 ------HNGLARKAVELFRQMLVEVVEPNDATLNSLLP-AYAILADLQQAMNIHCYLIRY 443
                 H+ L+      F +M  E  + +  T+ SLLP              +HCY+++ 
Sbjct: 210 NCNFTSHDDLS----NFFLRMQCEGFKADAFTVASLLPVCCGDTGKWDYGRELHCYVVKN 265

Query: 444 GF----LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           G      S V + + LID+YS+   +    ++F +  +K++++ VW+ +I GY  +G  +
Sbjct: 266 GLDLKMDSDVHLGSSLIDMYSRSKKVVLGRRVFDQ--MKNRNVYVWTAMINGYVQNGAPD 323

Query: 500 TAVSLFKEM-VQSGVQPNEVTFTSALHACSHGGLLDEGLDL--FNFMLENHQTCSRADHY 556
            A+ L + M ++ G++PN+V+  SAL AC     L  G  +  F+  +E +   S  +  
Sbjct: 324 DALVLLRAMQMKDGIRPNKVSLISALPACGLLAGLIGGKQIHGFSIKMELNDDVSLCN-- 381

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVA 607
             ++D+  + G LD A     T         W +++ A  +HG  E   +A
Sbjct: 382 -ALIDMYSKCGSLDYARRAFETSSYFKDAITWSSMISAYGLHGRGEEAIIA 431


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 209/622 (33%), Positives = 332/622 (53%), Gaps = 43/622 (6%)

Query: 80  TVMKMYAQNGASHDSLKMFLGMLRL--GEYNPDNYTYPI--VIKACTDLAWRKLGIALHG 135
           T +K +   G   D+ K  + ++RL     + D   +PI  ++ +CTD+     G  LHG
Sbjct: 66  TSLKEFTSRGNLLDAFKT-VSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHG 124

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
            ++  GF+    +   L+  Y  F  +  A  + +         WN LIS Y +N + ++
Sbjct: 125 HIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQK 184

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           AL  +  M+K G+ PD  +  SVL ACG   ++  G+ +HE +   R+  ++   NAL+ 
Sbjct: 185 ALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIKWSLIVHNALIS 244

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMIN----------------------------- 286
           MY KCG V  AR +FD++ ERD V+W SMI+                             
Sbjct: 245 MYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIELNIII 304

Query: 287 ------GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
                 GY   G+ + AL L   M+  G   +S+ +   L ACS +   K G+ +H++ I
Sbjct: 305 WNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAI 364

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
           +        V+ ALI MY++C  +K ++ +F     K  + WN+I++GC H   + +A  
Sbjct: 365 RSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASF 424

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY-GFLSVVEVSTGLIDIY 459
           L R+ML+  +EPN  T+ S+LP  A +A+LQ     HCY+ R   F   + +   L+D+Y
Sbjct: 425 LLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMY 484

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
           ++ G +  A ++F  +  +DK  + ++ +IAGYGM G G+ A+ LF+EM    ++P+ +T
Sbjct: 485 ARSGKVLEARRVFDMLGERDK--MTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHIT 542

Query: 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
             + L ACSH GL+ +G  LF  M   +      +H+ C+ DL GRAG L++A ++IR M
Sbjct: 543 MIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNM 602

Query: 580 PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAE 639
           P KPT A+W  L+GAC IH N E+GE AA+ L E++PENPG YVL++ +Y+A   W    
Sbjct: 603 PYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANMYAAAGCWNKLA 662

Query: 640 NVRDVMDEKGLRKAPAHSLIEV 661
            VR  M + G+RKAP  + ++V
Sbjct: 663 KVRIFMRDLGVRKAPGCAWVDV 684



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 137/539 (25%), Positives = 245/539 (45%), Gaps = 46/539 (8%)

Query: 14  HLVIKLVQQYAATKSIAGTKQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDE 69
           H +  L+      KS+A  +QLH  II+ G    P+      +   A+  + +  ++ + 
Sbjct: 101 HPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITEN 160

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
            +    F +N ++  Y +NG    +L  +  M++ G   PDN+TYP V+KAC +      
Sbjct: 161 SNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKG-IRPDNFTYPSVLKACGEELDLGF 219

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS---- 185
           G  +H  +  +       V N LI+MY   G+V  AR +FD + E   VSWN++IS    
Sbjct: 220 GKEVHESINASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYAS 279

Query: 186 -------------------------------GYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
                                          GY +    K AL +   M K G   D  +
Sbjct: 280 MGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVA 339

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           ++  L AC ++ + ++G+ IH        G+     NAL+ MY +C  +  A L+F  M 
Sbjct: 340 LIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLME 399

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
            + ++TW S+I+G         A  L + M   G+ PN +TI S+L  C+ +  L+ G+ 
Sbjct: 400 AKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKE 459

Query: 335 LHAW-TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            H + T +++ +  +++  AL+DMYA+   V  + +VF    ++  + + +++AG    G
Sbjct: 460 FHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQG 519

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVS 452
             + A++LF +M    ++P+  T+ ++L A +    + Q   +   +   YG    +E  
Sbjct: 520 EGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHF 579

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH---GETAVSLFKEM 508
             + D++ + G L  A +I   +P K     +W+ +I    +H +   GE A     EM
Sbjct: 580 ACMTDLFGRAGLLNKAKEIIRNMPYKPTP-AMWATLIGACRIHRNTEIGEWAAEKLLEM 637


>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 594

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 188/513 (36%), Positives = 296/513 (57%), Gaps = 4/513 (0%)

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           LI  Y + G  + A  +F+ + E  VV+W  +I G+    +  +A  +F  ML+S V+P+
Sbjct: 49  LIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPN 108

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV-KCGSVNEARLVF 270
             ++ SVL AC  +K +  G + H L     + +++   NAL+DMY   C ++++A  VF
Sbjct: 109 AFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVF 168

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
           + +  +  V+WT++I G+   GD  + L  F+ M  E V PNS +      AC+S+    
Sbjct: 169 NDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYS 228

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
            G+ +HA   K  L C+  V  +++DMY +CN +  + + F   ++K  + WN ++AG  
Sbjct: 229 CGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAG-Y 287

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
               + +++ LF QM  E  +PN  T  S+  A A LA L     +H  ++R GF   V 
Sbjct: 288 ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVA 347

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           +   LID+Y+KCGS+  +HK+F ++P   +D+V W+ ++ GYG HG+G+ AV LF EMVQ
Sbjct: 348 LINSLIDMYAKCGSISDSHKLFCDMP--GRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQ 405

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
           SG+QP+ + F   L  CSH GL+D+GL  F  MLE++      + Y C+VDLLGRAGR++
Sbjct: 406 SGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVE 465

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630
           EA+ L+  MP +P  +VWGALLGAC  +    LG +AA+ + +  P   G Y+LLSK+Y+
Sbjct: 466 EAFQLVENMPFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYA 525

Query: 631 AVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           A  +W +   +R +M     +K    S IE+RN
Sbjct: 526 AEGKWGEFAKMRKLMKGMNKKKEVGKSWIEIRN 558



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 125/494 (25%), Positives = 227/494 (45%), Gaps = 18/494 (3%)

Query: 2   NGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---G 58
           + P  H +P    L+++   Q+ +  ++    Q +      GP  +   ++L+++Y   G
Sbjct: 8   SSPHFHPIP----LIVRNSLQWISNSTL----QSNPPFTPEGP--SVWATNLIKSYFDKG 57

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
                  LF+E+ ER    +  ++  +      H +  MF  MLR  E  P+ +T   V+
Sbjct: 58  LTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLR-SEVQPNAFTMSSVL 116

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMY-MNFGEVKAARKVFDAMWEHSV 177
           KAC  +     G   H      G D   +V N L+ MY  +   +  A  VF+ +   + 
Sbjct: 117 KACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTA 176

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSW TLI+G+         L+ F  ML   V P+  S      AC  +     G+ IH  
Sbjct: 177 VSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAA 236

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V    L  +    N+++DMY +C  + +A+  F  ++E++++TW ++I GY    D   +
Sbjct: 237 VTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYE-RSDSSES 295

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L LF  M  EG +PN  T  S+ +AC++L  L  G+ +H   +++  +  V +  +LIDM
Sbjct: 296 LSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDM 355

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAKC  +  S ++F     +  V W  ++ G   +G  ++AV+LF +M+   ++P+    
Sbjct: 356 YAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVF 415

Query: 418 NSLLPAYAILADLQQAMN-IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
             +L   +    + + +      L  Y      E+   ++D+  + G +E A ++   +P
Sbjct: 416 MGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMP 475

Query: 477 IKDKDIVVWSVIIA 490
             + D  VW  ++ 
Sbjct: 476 F-EPDESVWGALLG 488



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 168/326 (51%), Gaps = 4/326 (1%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F+++  +++  + T++  +   G  +  L  F  ML L +  P+++++ I  +AC  ++
Sbjct: 167 VFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQML-LEDVGPNSFSFSIAARACASIS 225

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
               G  +H  V   G   D  V N ++ MY     +  A++ F  + E ++++WNTLI+
Sbjct: 226 SYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIA 285

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY + + + E+L +F  M   G +P+C +  S+  AC  L  +  G+ +H  +      K
Sbjct: 286 GY-ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDK 344

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           N+A  N+L+DMY KCGS++++  +F  M  RD+V+WT+M+ GY  +G  + A+ LF  M 
Sbjct: 345 NVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMV 404

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRG-RSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
             G++P+ +    +L  CS    + +G +   +     N+  +  +   ++D+  +   V
Sbjct: 405 QSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRV 464

Query: 365 KLSFQVFARTS-KKKTVPWNAILAGC 389
           + +FQ+      +     W A+L  C
Sbjct: 465 EEAFQLVENMPFEPDESVWGALLGAC 490



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 3/178 (1%)

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
           T LI  Y    L + +  +F    ++  V W A++ G        +A  +F +ML   V+
Sbjct: 47  TNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQ 106

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY-SKCGSLESAHK 470
           PN  T++S+L A   +  L      H    ++G    V V   L+D+Y + C +++ A  
Sbjct: 107 PNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALS 166

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
           +F++IP+K    V W+ +IAG+   G G + +  F++M+   V PN  +F+ A  AC+
Sbjct: 167 VFNDIPLKTA--VSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACA 222


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 222/671 (33%), Positives = 350/671 (52%), Gaps = 46/671 (6%)

Query: 37  AFIITSGPLFTHLRS--SLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGAS 91
           A+ +  G +F ++ S  +++  +   G +     LF++M ER S  +N++M  Y  NG  
Sbjct: 58  AYRVFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGEL 117

Query: 92  HDSLKMF--LGMLRLG-EYNPDNYTYPIVIKACTDLA----WRKLG-IALHGRVLITGFD 143
             ++K    LG L+L  + +     +   I  C + +    + K G +    +V     +
Sbjct: 118 EATIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPN 177

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
              F  N +I  Y  +G VK A ++F  M E   VSWNT+IS   ++ +  E L  F  M
Sbjct: 178 PSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEM 237

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
              G  P+  +  SVL AC  + ++E G  +H  +       ++ A   L+DMY KCG +
Sbjct: 238 WNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRL 297

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
             AR VFD ++E + V+WTS+I G A  G    AL LF  M+   V  +  T+ ++L  C
Sbjct: 298 ESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVC 357

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV------------------- 364
            S   +  G  LHA TI + L+  V V  AL+ MYAKC  V                   
Sbjct: 358 LSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWT 417

Query: 365 ------------KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
                       + + + F +  ++  + WN++LA  +  G   + ++++ QML E V+ 
Sbjct: 418 AMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKT 477

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           +  T ++ + A A LA L     I     + GF S V V+  ++ +YS+CG +E A K+F
Sbjct: 478 DWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMF 537

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
           S I +K+  +V W+ ++AGY  +G G   + +F++M+  G  P+++++ S L  CSH G 
Sbjct: 538 SSIVMKN--LVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGF 595

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           + EG   F  M ++H     ++H+ C+VDLLGRAG+L++A +LI  MP KP  A+WGALL
Sbjct: 596 VSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALL 655

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
            AC IHGN +L E+A K L EL+ E PG+Y LL+ +YS   + +   NVR +M +KG+RK
Sbjct: 656 AACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRK 715

Query: 653 APAHSLIEVRN 663
            P  S IEV N
Sbjct: 716 NPGCSWIEVDN 726



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 143/553 (25%), Positives = 250/553 (45%), Gaps = 73/553 (13%)

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +K C  L    +   LH +++  G     F+ N L+ MY N G +  A +VF  +   +V
Sbjct: 11  MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 70

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWM----------LKSGVEPDCASVVSVLPACGYLKE 227
            SWNT+ISG+  +   +EA  +F+ M          + SG   +   + + + A G L  
Sbjct: 71  YSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHN-GELEATIKASGSLGY 129

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +++   +H        G +     +++DMY+KCG+++ A+ VF R     +  W SMI G
Sbjct: 130 LKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYG 189

Query: 288 YALNGDVRNALGLFQLMQ-------------------------------FEGVRPNSLTI 316
           Y+  G V+ AL LF  M                                 +G RPNS+T 
Sbjct: 190 YSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTY 249

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
            S+LSAC+S+Y L+ G  LHA  ++     +V     LIDMYAKC  ++ + QVF   ++
Sbjct: 250 ASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTE 309

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
              V W +++ G    G   +A+ LF QM    V  +  TL ++L       D+     +
Sbjct: 310 HNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQL 369

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD----------------- 479
           H + I  G  S V V+  L+ +Y+KCG +  A+  F  +PI+D                 
Sbjct: 370 HAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDV 429

Query: 480 ------------KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
                       ++++ W+ ++A Y   G+ E  + ++ +M++ GV+ + +TF++++ AC
Sbjct: 430 EKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISAC 489

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           +   +L  G  +     E     S       +V +  R G+++EA  +  ++ +K     
Sbjct: 490 ADLAVLILGNQILA-QAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMK-NLVS 547

Query: 588 WGALLGACVIHGN 600
           W A++     +G 
Sbjct: 548 WNAMMAGYAQNGQ 560



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 155/361 (42%), Gaps = 79/361 (21%)

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           +  C+SL  +   R LHA  I   L+  + ++  L++MY+ C L+  +++VF        
Sbjct: 11  MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNV 70

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY-------------AI 426
             WN +++G   +G  R+A +LF +M     E +  + NS++  Y               
Sbjct: 71  YSWNTMISGFADSGQMREAEKLFEKM----PERDSVSWNSMMSGYFHNGELEATIKASGS 126

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP---------- 476
           L  L+ A+ +H +  ++ F     V T ++D+Y KCG+++ A K+F   P          
Sbjct: 127 LGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSM 186

Query: 477 -------------------IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
                              + ++D V W+ +I+    HG G   ++ F EM   G +PN 
Sbjct: 187 IYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNS 246

Query: 518 VTFTSALHACSHGGLLDEG-------------LDLFN--FMLENHQTCSR---------- 552
           +T+ S L AC+    L+ G             LD++    +++ +  C R          
Sbjct: 247 MTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDG 306

Query: 553 -----ADHYTCIVDLLGRAGRLDEA---YDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
                A  +T ++  + +AG  +EA   ++ +R +P+         +LG C+   ++ +G
Sbjct: 307 LTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIG 366

Query: 605 E 605
           E
Sbjct: 367 E 367


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 186/533 (34%), Positives = 299/533 (56%), Gaps = 34/533 (6%)

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           ++F+ +     ++W ++I  Y  +    ++L  F  ML SG+ PD     SVL +C  L 
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA-------------------- 266
           ++ +G  +H  +    L  ++   NAL++MY K   + E+                    
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 267 ------------RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
                       R +F+ M E+D+V+W ++I G A NG     L + + M    ++P+S 
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T+ S+L   +    + RG+ +H  +I+Q L+ ++ V ++LIDMYAKC  V  S +VF   
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLL 300

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
           +++  + WN+I+AGCV NGL  + +  FRQML+  ++P   + +S++PA A L  L    
Sbjct: 301 TERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGK 360

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            +H Y+ R GF   + +++ L+D+Y+KCG++ +A +IF  + +  +D+V W+ +I G  +
Sbjct: 361 QLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRL--RDMVSWTAMIMGCAL 418

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           HG    A+ LF++M   G++PN V F + L ACSHGGL+DE    FN M  +       +
Sbjct: 419 HGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVE 478

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HY  + DLLGRAGRL+EAYD I  M + PT ++W  LL AC +H N+++ E  A  + E+
Sbjct: 479 HYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEV 538

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           +P N G Y+LL+ +YSA RRWK+A   R  M   G+RK PA S IEV+N + A
Sbjct: 539 DPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYA 591



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 155/541 (28%), Positives = 263/541 (48%), Gaps = 40/541 (7%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVS---NVRILFD 68
           T  LV  L++   + KS +  +QLHA ++          S L+  Y H++   +   LF+
Sbjct: 5   TEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRLFN 64

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
            +    +  + +V++ Y  +G  H SL  F+GML  G Y PD+  +P V+K+C  L    
Sbjct: 65  TIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLY-PDHNVFPSVLKSCALLMDLN 123

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMY-------------MNFGEV------------- 162
           LG +LHG ++  G D D + GN L+ MY             +  GEV             
Sbjct: 124 LGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRT 183

Query: 163 ------KAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVV 216
                  + RK+F+ M E  +VSWNT+I+G  +N   +E L +   M  + ++PD  ++ 
Sbjct: 184 VSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLS 243

Query: 217 SVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER 276
           SVLP      +I  G+ IH       L  +I   ++L+DMY KC  V ++  VF  ++ER
Sbjct: 244 SVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTER 303

Query: 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
           D ++W S+I G   NG     L  F+ M    ++P S +  S++ AC+ L  L  G+ LH
Sbjct: 304 DGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLH 363

Query: 337 AWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR 396
            +  +   +  + + ++L+DMYAKC  ++ + Q+F R   +  V W A++ GC  +G A 
Sbjct: 364 GYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAP 423

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGL 455
            A+ELF QM  E ++PN     ++L A +    + +A      + R +G    VE    +
Sbjct: 424 DAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAV 483

Query: 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP 515
            D+  + G LE A+     + I      +W+ +++   +H + + A  +   +++  V P
Sbjct: 484 SDLLGRAGRLEEAYDFICGMHIGPTG-SIWATLLSACRVHXNIDMAEKVANRILE--VDP 540

Query: 516 N 516
           N
Sbjct: 541 N 541


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 212/651 (32%), Positives = 336/651 (51%), Gaps = 9/651 (1%)

Query: 18   KLVQQYAATKSIAGTKQLHAFIITSGPL------FTHLRSSLVRAYGHVSNVRILFDEMS 71
            +L+Q   A     G + +H  ++ SG L        ++  ++    G   +   +FD + 
Sbjct: 433  RLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLP 492

Query: 72   ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
            ER+   + T+++ +A  G   ++  +F   LR   +  + +    V+K    +    L  
Sbjct: 493  ERNMVSFVTLVQGHALRGEFEEASALF-QRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAW 551

Query: 132  ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
             +H      G D + FVG+ LI  Y   G V  AR+VFD +     V+W  ++S Y +N 
Sbjct: 552  GVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSEND 611

Query: 192  YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
              +  L +F  M  +  + +  ++ SVL A   L  + +G+ IH              + 
Sbjct: 612  CPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYG 671

Query: 252  ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            AL+DMY KCG++ +ARL F+ ++  DV+ W+ MI+ YA       A  LF  M    V P
Sbjct: 672  ALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSP 731

Query: 312  NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
            N  ++ S+L AC+++  L  G+ +H   IK   E E+ V  ALID+YAKC+ ++ S ++F
Sbjct: 732  NEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIF 791

Query: 372  ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
            +       V WN I+ G   +G    A+ +FR+M    V     T +S+L A A  A + 
Sbjct: 792  SSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASIN 851

Query: 432  QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
                +HC + +  F S   VS  LID Y+KCG +  A +IF  +  K+ D+V W+ II+G
Sbjct: 852  HVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETL--KECDLVSWNAIISG 909

Query: 492  YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
            Y +HG    A  LF  M ++ ++ N++TF + L  C   GL+ +GL LF+ M  +H    
Sbjct: 910  YAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEP 969

Query: 552  RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
              +HYTCIV LLGRAGRL++A + I  +P  P+  VW ALL +C++H NVELG  +A+ +
Sbjct: 970  SMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKV 1029

Query: 612  FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
             E+EP++   YVLLS +YSA          R  M   G+RK P  S +E++
Sbjct: 1030 LEIEPQDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIK 1080



 Score =  224 bits (572), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 150/512 (29%), Positives = 259/512 (50%), Gaps = 12/512 (2%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITG--FDMDTFVGNCLIAMYMNFGEVKAARK 167
           D+Y Y  +++ C      + G A+HG V+ +G    +D F  N L+ MY   G   +A +
Sbjct: 427 DSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHR 486

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VFD + E ++VS+ TL+ G+      +EA  +F  +   G E +   + +VL     +  
Sbjct: 487 VFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDT 546

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           + +   +H         +N    +AL+D Y  CG V++AR VFD +  +D V WT+M++ 
Sbjct: 547 LGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSC 606

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y+ N    N L +F  M+    + N   + S+L A   L  +  G+ +HA ++K   + E
Sbjct: 607 YSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTE 666

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
             V  AL+DMYAKC  ++ +   F   +    + W+ +++         +A ELF +M+ 
Sbjct: 667 RHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMR 726

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
             V PN+ +L+S+L A A +  L     IH + I+ G  S + V   LID+Y+KC  +ES
Sbjct: 727 SSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMES 786

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           + +IFS   ++D + V W+ II GY   G GE A+S+F+EM  + V   +VT++S L AC
Sbjct: 787 SLEIFSS--LRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRAC 844

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           +    ++  +   + ++E     S       ++D   + G + +A ++  T  LK    V
Sbjct: 845 ASTASINH-VGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFET--LKECDLV 901

Query: 588 -WGALLGACVIHGNVELGEVAAKWLFELEPEN 618
            W A++    +HG   +    A+ LF++  +N
Sbjct: 902 SWNAIISGYAVHGQAAM----AQELFDMMSKN 929


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 218/639 (34%), Positives = 351/639 (54%), Gaps = 17/639 (2%)

Query: 33  KQLHAFIITSGPLF-THLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+H   + SG L    + +SLV  Y    +    R +FDEM  ++   + +++  YA+N
Sbjct: 124 RQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARN 183

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G + D +   +  +++   NP+ +T+  V+ A  D +  + G+ +H  ++  GF+  TFV
Sbjct: 184 GLN-DEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFV 242

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N LI MY+    V  A  VFD+M     V+WN +I GY    +  E   +F  M  +GV
Sbjct: 243 CNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGV 302

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVA--GGRLGKNIAAWNALVDMYVKCGSVNEA 266
           +       + L  C   +E+   + +H  V   G    ++I    AL+  Y KC SV+EA
Sbjct: 303 KLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT--ALMVTYSKCSSVDEA 360

Query: 267 RLVFDRM-SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
             +F    +  +VVTWT+MI G+  N + + A+ LF  M  EGVRPN  T  ++L+   S
Sbjct: 361 FKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPS 420

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
                    LHA  IK   E    V TAL+D Y K   V  S +VF     K  V W+A+
Sbjct: 421 SLL----SQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAM 476

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA-YAILADLQQAMNIHCYLIRYG 444
           L G      + KA+E+F Q++ E V+PN+ T +S++ A  +  A ++    IH   ++ G
Sbjct: 477 LTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSG 536

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
             + + VS+ L+ +YSK G++ESA K+F+    +++DIV W+ +I GYG HG  + A+ +
Sbjct: 537 KSNALCVSSALLTMYSKKGNIESAEKVFTRQ--EERDIVSWNSMITGYGQHGDAKKALEV 594

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           F+ M   G+  ++VTF   L AC+H GL++EG   FN M++++    + +HY+C+VDL  
Sbjct: 595 FQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYS 654

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
           RAG  D+A D+I  MP   +  +W  LL AC +H N+ELG++AA+ L  L+P +   YVL
Sbjct: 655 RAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVL 714

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           LS +++    W++  +VR +MDE+ ++K    S IE++N
Sbjct: 715 LSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKN 753



 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 152/466 (32%), Positives = 235/466 (50%), Gaps = 12/466 (2%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LFDE   +    YN ++  +++N    ++L +F  +   G    D  T    +K C  L 
Sbjct: 60  LFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSG-LGVDGLTLSCALKVCGVLF 118

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
            + +G  +H + L +GF  D  VG  L+ MYM   + +  R +FD M   +VVSW +L+S
Sbjct: 119 DQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLS 178

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY +N    E + + + M   GV P+  +  +VL A      IE G  +H ++       
Sbjct: 179 GYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEF 238

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
                NAL+ MY+K   V +A  VFD M  RD VTW  MI GYA  G       +F  M+
Sbjct: 239 TTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMR 298

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
             GV+ +     + L  CS    L   + LH   +K   E    + TAL+  Y+KC+ V 
Sbjct: 299 LAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVD 358

Query: 366 LSFQVFART-SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
            +F++F+   +    V W A++ G V N   +KAV+LF QM  E V PN  T +++L   
Sbjct: 359 EAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGK 418

Query: 425 --AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
             ++L+ L      H  +I+  +  V  V+T L+D Y K G++  + ++F  IP   KDI
Sbjct: 419 PSSLLSQL------HAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPA--KDI 470

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
           V WS ++ G       E A+ +F ++V+ GV+PNE TF+S ++ACS
Sbjct: 471 VAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACS 516



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 117/430 (27%), Positives = 211/430 (49%), Gaps = 7/430 (1%)

Query: 163 KAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC 222
           + A ++FD      +  +N L+  + +N + +EAL +F  +  SG+  D  ++   L  C
Sbjct: 55  RYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVC 114

Query: 223 GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
           G L +  +GR +H         ++++   +LVDMY+K     + R +FD M  ++VV+WT
Sbjct: 115 GVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWT 174

Query: 283 SMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           S+++GYA NG     + L   MQ EGV PN  T  ++L A +    ++ G  +HA  +K 
Sbjct: 175 SLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKN 234

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
             E    V  ALI MY K  +V  +  VF     + +V WN ++ G    G   +  ++F
Sbjct: 235 GFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMF 294

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
            +M +  V+ +     + L   +   +L     +HC +++ G+    ++ T L+  YSKC
Sbjct: 295 HRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKC 354

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
            S++ A K+FS +     ++V W+ +I G+  + + + AV LF +M + GV+PN  T+++
Sbjct: 355 SSVDEAFKLFS-MADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYST 413

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
            L       L      +     E   + +     T ++D   + G + E+  +  ++P K
Sbjct: 414 VLAGKPSSLLSQLHAQIIKAYYEKVPSVA-----TALLDAYVKTGNVVESARVFYSIPAK 468

Query: 583 PTHAVWGALL 592
              A W A+L
Sbjct: 469 DIVA-WSAML 477



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 154/335 (45%), Gaps = 3/335 (0%)

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           A  +FD    +D+  +  ++  ++ N   R AL LF+ +   G+  + LT+   L  C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           L+    GR +H  ++K     +V V T+L+DMY K    +    +F     K  V W ++
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           L+G   NGL  + + L  QM +E V PN  T  ++L A A  + ++  + +H  +++ GF
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
                V   LI +Y K   +  A  +F  + ++D   V W+++I GY   G       +F
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDS--VTWNIMIGGYAAIGFYLEGFQMF 294

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
             M  +GV+ +   F +AL  CS    L+    L   +++N    ++ D  T ++    +
Sbjct: 295 HRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQ-DIRTALMVTYSK 353

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
              +DEA+ L            W A++G  V + N
Sbjct: 354 CSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNN 388


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 205/641 (31%), Positives = 349/641 (54%), Gaps = 15/641 (2%)

Query: 27  KSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMK 83
           + +   +Q+H  I  +      L + +VRAYG    V++ R+ FD ++ ++ + + +++ 
Sbjct: 38  QDLESVRQIHDRISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLT 97

Query: 84  MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT-GF 142
            YAQNG    +L ++  M    +  P+   Y  V+ AC  +   + G A+H R+  T G 
Sbjct: 98  AYAQNGHYRAALDLYKRM----DLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGL 153

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAM-WEHSVVSWNTLISGYFKNAYAKEALVVFD 201
            +D  + N L+ MY   G ++ A+++F+ M    SV SWN +I+ Y ++ + +EA+ +++
Sbjct: 154 KLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYE 213

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
            M    VEP   +  SVL AC  L  ++ GR IH L++      +++  NAL+ MY +C 
Sbjct: 214 DM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCK 270

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
            +++A  +F R+  RDVV+W++MI  +A       A+  +  MQ EGVRPN  T  S+L 
Sbjct: 271 CLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLL 330

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
           AC+S+  L+ GR++H   +    +  ++  TAL+D+Y     +  +  +F +   +    
Sbjct: 331 ACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGL 390

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS-LLPAYAILADLQQAMNIHCYL 440
           W  ++ G    G     +EL+R+M      P    + S ++ A A L     A   H  +
Sbjct: 391 WTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDI 450

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
              G +S   ++T L+++YS+ G+LESA ++F ++    +D + W+ +IAGY  HG    
Sbjct: 451 EADGMISDFVLATSLVNMYSRWGNLESARQVFDKMS--SRDTLAWTTLIAGYAKHGEHGL 508

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560
           A+ L+KEM   G +P+E+TF   L+ACSH GL ++G  LF  +  ++       HY+CI+
Sbjct: 509 ALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCII 568

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620
           DLL RAGRL +A +LI  MP++P    W +LLGA  IH +V+    AA  + +L+P +P 
Sbjct: 569 DLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPA 628

Query: 621 NYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +YVLLS +++         +VR+ M  +G++K    S IEV
Sbjct: 629 SYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEV 669


>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570-like [Cucumis sativus]
          Length = 606

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 188/513 (36%), Positives = 296/513 (57%), Gaps = 4/513 (0%)

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           LI  Y + G  + A  +F+ + E  VV+W  +I G+    +  +A  +F  ML+S V+P+
Sbjct: 49  LIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQPN 108

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV-KCGSVNEARLVF 270
             ++ SVL AC  +K +  G + H L     + +++   NAL+DMY   C ++++A  VF
Sbjct: 109 AFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVF 168

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
           + +  +  V+WT++I G+   GD  + L  F+ M  E V PNS +      AC+S+    
Sbjct: 169 NDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYS 228

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
            G+ +HA   K  L C+  V  +++DMY +CN +  + + F   ++K  + WN ++AG  
Sbjct: 229 CGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAG-Y 287

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
               + +++ LF QM  E  +PN  T  S+  A A LA L     +H  ++R GF   V 
Sbjct: 288 ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVA 347

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           +   LID+Y+KCGS+  +HK+F ++P   +D+V W+ ++ GYG HG+G+ AV LF EMVQ
Sbjct: 348 LINSLIDMYAKCGSISDSHKLFCDMP--GRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQ 405

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
           SG+QP+ + F   L  CSH GL+D+GL  F  MLE++      + Y C+VDLLGRAGR++
Sbjct: 406 SGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVE 465

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630
           EA+ L+  MP +P  +VWGALLGAC  +    LG +AA+ + +  P   G Y+LLSK+Y+
Sbjct: 466 EAFQLVENMPFEPDESVWGALLGACKAYKLSNLGNLAAQRVLDRRPNMAGTYLLLSKIYA 525

Query: 631 AVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           A  +W +   +R +M     +K    S IE+RN
Sbjct: 526 AEGKWGEFAKMRKLMKGMNKKKEVGKSWIEIRN 558



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 125/494 (25%), Positives = 227/494 (45%), Gaps = 18/494 (3%)

Query: 2   NGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---G 58
           + P  H +P    L+++   Q+ +  ++    Q +      GP  +   ++L+++Y   G
Sbjct: 8   SSPHFHPIP----LIVRNSLQWISNSTL----QSNPPFTPEGP--SVWATNLIKSYFDKG 57

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
                  LF+E+ ER    +  ++  +      H +  MF  MLR  E  P+ +T   V+
Sbjct: 58  LTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLR-SEVQPNAFTMSSVL 116

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMY-MNFGEVKAARKVFDAMWEHSV 177
           KAC  +     G   H      G D   +V N L+ MY  +   +  A  VF+ +   + 
Sbjct: 117 KACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDIPLKTA 176

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSW TLI+G+         L+ F  ML   V P+  S      AC  +     G+ IH  
Sbjct: 177 VSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACASISSYSCGKQIHAA 236

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V    L  +    N+++DMY +C  + +A+  F  ++E++++TW ++I GY    D   +
Sbjct: 237 VTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIAGYE-RSDSSES 295

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L LF  M  EG +PN  T  S+ +AC++L  L  G+ +H   +++  +  V +  +LIDM
Sbjct: 296 LSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDM 355

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAKC  +  S ++F     +  V W  ++ G   +G  ++AV+LF +M+   ++P+    
Sbjct: 356 YAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVF 415

Query: 418 NSLLPAYAILADLQQAMN-IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
             +L   +    + + +      L  Y      E+   ++D+  + G +E A ++   +P
Sbjct: 416 MGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMP 475

Query: 477 IKDKDIVVWSVIIA 490
             + D  VW  ++ 
Sbjct: 476 F-EPDESVWGALLG 488



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 168/326 (51%), Gaps = 4/326 (1%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F+++  +++  + T++  +   G  +  L  F  ML L +  P+++++ I  +AC  ++
Sbjct: 167 VFNDIPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQML-LEDVGPNSFSFSIAARACASIS 225

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
               G  +H  V   G   D  V N ++ MY     +  A++ F  + E ++++WNTLI+
Sbjct: 226 SYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCFGELTEKNLITWNTLIA 285

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY + + + E+L +F  M   G +P+C +  S+  AC  L  +  G+ +H  +      K
Sbjct: 286 GY-ERSDSSESLSLFFQMGSEGYKPNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDK 344

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           N+A  N+L+DMY KCGS++++  +F  M  RD+V+WT+M+ GY  +G  + A+ LF  M 
Sbjct: 345 NVALINSLIDMYAKCGSISDSHKLFCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMV 404

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRG-RSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
             G++P+ +    +L  CS    + +G +   +     N+  +  +   ++D+  +   V
Sbjct: 405 QSGIQPDRIVFMGVLCGCSHAGLVDKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRV 464

Query: 365 KLSFQVFARTS-KKKTVPWNAILAGC 389
           + +FQ+      +     W A+L  C
Sbjct: 465 EEAFQLVENMPFEPDESVWGALLGAC 490



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 3/178 (1%)

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
           T LI  Y    L + +  +F    ++  V W A++ G        +A  +F +ML   V+
Sbjct: 47  TNLIKSYFDKGLTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAWTMFSEMLRSEVQ 106

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY-SKCGSLESAHK 470
           PN  T++S+L A   +  L      H    ++G    V V   L+D+Y + C +++ A  
Sbjct: 107 PNAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALS 166

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
           +F++IP+K    V W+ +IAG+   G G + +  F++M+   V PN  +F+ A  AC+
Sbjct: 167 VFNDIPLKTA--VSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPNSFSFSIAARACA 222


>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
 gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
          Length = 772

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 223/644 (34%), Positives = 333/644 (51%), Gaps = 22/644 (3%)

Query: 34  QLHAFIITSGPLFTH-----LRSSLVRAYGHVSNVR---ILFDEMSERSSFLYNTVMKMY 85
            +HA+ +  G L        + SSLV  Y     VR    LF+EM ER    +  V+   
Sbjct: 131 SVHAYCVRYGLLAVDGGSVAVPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVSGC 190

Query: 86  AQNGASHDSLKMFLGMLRL---GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
            +NG   D L+  + M+RL   G+  P++ T    ++AC  L     G  LHG  +  G 
Sbjct: 191 VRNGECGDGLRYLVEMVRLAGDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGV 250

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
                V + L +MY      + A  +F  + E  VVSW +LI  Y      +EA+ +F  
Sbjct: 251 GDSPMVISALFSMYSKCHSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQE 310

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           M++SG++PD   V  +L   G    +  G+  H ++     G N+   NAL+ MY K   
Sbjct: 311 MMESGLQPDDVLVSCLLSGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFEL 370

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV-----RPNSLTIG 317
           V+ A  VF  + +RD  +W  MI GY   G     L L++ MQF          NSL   
Sbjct: 371 VDNAGRVFRLLHQRDADSWNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLCDANSLV-- 428

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS-K 376
           S +S+CS L  L+ GRS H ++IK  L+ +  V   LI MY +C     + ++F     K
Sbjct: 429 SAISSCSRLVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLK 488

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
              V WN +++   H G +  AV L+ QML E + PN  TL +++ A A L  L++   I
Sbjct: 489 GDVVTWNTLISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERGEKI 548

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H Y+   G+   V ++T LID+Y+KCG L +A +IF  +     D+V W+V+I+GYGMHG
Sbjct: 549 HSYVKEMGWDYDVSINTALIDMYAKCGQLGTARRIFDSM--LQHDVVAWNVMISGYGMHG 606

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
             + A+ LF +M    ++PN VTF + L AC H GLL+EG  LF  M   +       HY
Sbjct: 607 EAKQALELFGKMEGGSIKPNGVTFLAILSACCHSGLLEEGRQLFTRM-GKYSLEPNLKHY 665

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
            C+VDLLG++G L EA D++  MP++P   +WG LL AC +H + E+G   AK  F  + 
Sbjct: 666 ACMVDLLGKSGHLQEAEDMVLAMPVEPDGGIWGTLLSACKLHDDFEMGLRIAKKAFASDA 725

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           EN G Y+L+S  Y + ++W + E +R+ M   G++K    S ++
Sbjct: 726 ENEGYYILISNSYGSAKKWDEIEKLREAMKNHGVQKGAGWSAVD 769



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 165/584 (28%), Positives = 278/584 (47%), Gaps = 19/584 (3%)

Query: 34  QLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           ++HA  +TSG      + + LV AY   G      + F       +FL+N++++ +    
Sbjct: 30  RVHALAVTSGLSQRPDIVAKLVSAYSSAGRPGLAALAFSACPRPDAFLWNSLIRTHHCAS 89

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF----DMD 145
               +L     ML      P  +T P+   A  +L    +G ++H   +  G        
Sbjct: 90  DFVAALNAHRRMLA-SSARPSPFTVPLAASAAAELGALGVGASVHAYCVRYGLLAVDGGS 148

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
             V + L+ MY   G V+ A K+F+ M E  VV+W  ++SG  +N    + L     M++
Sbjct: 149 VAVPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVSGCVRNGECGDGLRYLVEMVR 208

Query: 206 ----SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
                   P+  ++ S L ACG L E+  GR +H       +G +    +AL  MY KC 
Sbjct: 209 LAGDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYSKCH 268

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
           S  +A  +F  + E+DVV+WTS+I  Y   G +R A+ LFQ M   G++P+ + +  LLS
Sbjct: 269 STEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLS 328

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
              +   +  G++ HA  +K+N    V+V  ALI MY K  LV  + +VF    ++    
Sbjct: 329 GLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDADS 388

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI---LADLQQAMNIHC 438
           WN ++ G    G   K +EL+R+M            NSL+ A +    L +L+   + HC
Sbjct: 389 WNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLCDANSLVSAISSCSRLVELRLGRSAHC 448

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           Y I++       V+  LI +Y +CG  + A KIF    +K  D+V W+ +I+ Y   GH 
Sbjct: 449 YSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKG-DVVTWNTLISSYAHLGHS 507

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
            TAVSL+ +M+  G+ PN  T  + + AC++   L+ G  + +++ E       + + T 
Sbjct: 508 NTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSIN-TA 566

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           ++D+  + G+L  A  +  +M L+     W  ++    +HG  +
Sbjct: 567 LIDMYAKCGQLGTARRIFDSM-LQHDVVAWNVMISGYGMHGEAK 609



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 187/383 (48%), Gaps = 8/383 (2%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHL-RSSLVRAYGH---VSNVRILFDEM 70
           LV  L+     + ++ G K  HA I+        L  ++L+  YG    V N   +F  +
Sbjct: 322 LVSCLLSGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFELVDNAGRVFRLL 381

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN--PDNYTYPIVIKACTDLAWRK 128
            +R +  +N ++  Y + G     L+++  M     Y    D  +    I +C+ L   +
Sbjct: 382 HQRDADSWNLMIVGYCKAGCDVKCLELYREMQFRDTYEFLCDANSLVSAISSCSRLVELR 441

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD-AMWEHSVVSWNTLISGY 187
           LG + H   +    D D+ V N LI MY   G+   A K+F  A  +  VV+WNTLIS Y
Sbjct: 442 LGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSY 501

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
               ++  A+ ++D ML  G+ P+  ++++V+ AC  L  +E G  IH  V       ++
Sbjct: 502 AHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDV 561

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
           +   AL+DMY KCG +  AR +FD M + DVV W  MI+GY ++G+ + AL LF  M+  
Sbjct: 562 SINTALIDMYAKCGQLGTARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGG 621

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC-NLVKL 366
            ++PN +T  ++LSAC     L+ GR L     K +LE  +     ++D+  K  +L + 
Sbjct: 622 SIKPNGVTFLAILSACCHSGLLEEGRQLFTRMGKYSLEPNLKHYACMVDLLGKSGHLQEA 681

Query: 367 SFQVFARTSKKKTVPWNAILAGC 389
              V A   +     W  +L+ C
Sbjct: 682 EDMVLAMPVEPDGGIWGTLLSAC 704


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 202/558 (36%), Positives = 309/558 (55%), Gaps = 44/558 (7%)

Query: 133 LHGRVLITG-----FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           +H +++ TG     F +   +  C I+    FG +  A  +F+++ + +   WNT+I G 
Sbjct: 51  IHSQIIKTGLHNTQFALSKLIEFCAIS---PFGNLSYALLLFESIEQPNQFIWNTMIRGN 107

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV--------- 238
             ++    A+  +  ML  GVEP+  +   +L +C  +   + G+ IH  V         
Sbjct: 108 SLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDP 167

Query: 239 -----------AGGRLG-----------KNIAAWNALVDMYVKCGSVNEARLVFDRMSER 276
                        G LG           ++  ++ AL+  Y   G +++AR +F+ +  R
Sbjct: 168 FVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVR 227

Query: 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
           D V+W +MI GYA +G    AL  FQ M+   V PN  T+ ++LSAC+    L+ G  + 
Sbjct: 228 DAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVR 287

Query: 337 AWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR 396
           +W     L   + +  ALIDMY+KC  +  +  +F    +K  + WN ++ G  H    +
Sbjct: 288 SWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYK 347

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS--TG 454
           +A+ LFR+M    VEPND T  S+LPA A L  L     IH Y I   FL +   S  T 
Sbjct: 348 EALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAY-IDKKFLGLTNTSLWTS 406

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           LID+Y+KCG++E+A ++F+ +  K K +  W+ +I+G  MHGH   A+ LF++M   G +
Sbjct: 407 LIDMYAKCGNIEAAKQVFAGM--KPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFE 464

Query: 515 PNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYD 574
           P+++TF   L ACSH GL++ G   F+ M+E++    +  HY C++DLLGRAG  DEA  
Sbjct: 465 PDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEA 524

Query: 575 LIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRR 634
           L++ M +KP  A+WG+LLGAC +HGNVELGE AAK LFELEPENPG YVLLS +Y+   R
Sbjct: 525 LMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGR 584

Query: 635 WKDAENVRDVMDEKGLRK 652
           W D   +R  +++KG++K
Sbjct: 585 WDDVARIRTKLNDKGMKK 602



 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 169/555 (30%), Positives = 278/555 (50%), Gaps = 70/555 (12%)

Query: 1   MNGPSHHTLPKTTHLVIKLVQQY------AATKSIAGTKQLHAFIITSGPLFTHLRSS-- 52
           M  P+ H  P T+    KL+Q +      +  KS    KQ+H+ II +G   T    S  
Sbjct: 12  MPPPTLHFQP-TSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKL 70

Query: 53  ----LVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN 108
                +  +G++S   +LF+ + + + F++NT+++  + + +   ++  ++ ML  G   
Sbjct: 71  IEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCG-VE 129

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGE------- 161
           P++YT+P ++K+C  +   + G  +HG VL  G + D FV   LI MY   GE       
Sbjct: 130 PNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELV 189

Query: 162 ------------------------VKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
                                   +  AR++F+ +     VSWN +I+GY ++   +EAL
Sbjct: 190 FSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEAL 249

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
             F  M ++ V P+ +++V+VL AC     +E+G  +   +    LG N+   NAL+DMY
Sbjct: 250 AFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMY 309

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
            KCG +++AR +F+ + E+D+++W  MI GY+     + AL LF+ MQ   V PN +T  
Sbjct: 310 SKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFV 369

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLE-CEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
           S+L AC+ L  L  G+ +HA+  K+ L      + T+LIDMYAKC  ++ + QVFA    
Sbjct: 370 SILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKP 429

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           K    WNA+++G   +G A  A+ELFRQM  E  EP+D T   +L A +           
Sbjct: 430 KSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACS----------- 478

Query: 437 HCYLIRYG---FLSVVE---VSTGL------IDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           H  L+  G   F S+VE   +S  L      ID+  + G  + A  +   + +K  D  +
Sbjct: 479 HAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMK-PDGAI 537

Query: 485 WSVIIAGYGMHGHGE 499
           W  ++    +HG+ E
Sbjct: 538 WGSLLGACRVHGNVE 552


>gi|242035545|ref|XP_002465167.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
 gi|241919021|gb|EER92165.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
          Length = 564

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 200/501 (39%), Positives = 289/501 (57%), Gaps = 8/501 (1%)

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARK 167
           PD++T+P +++A    A        H   L  G    + F    L+  Y+ FG V  A +
Sbjct: 67  PDSFTFPPLVRAAPGPAS---AAQFHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYR 123

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VFD M E  V +WN ++SG  +NA A +A+ +F  M+  GV  D  ++ SVLP C  L +
Sbjct: 124 VFDEMPERDVPAWNAMLSGLCRNARAVDAVALFGRMVGEGVAGDAVTLSSVLPMCVLLGD 183

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
             +  ++H       L   +   NAL+D+Y K G + EAR VF  M+ RD+VTW S+I+ 
Sbjct: 184 RALALVMHVYAVKRGLSGELFVCNALIDVYGKLGMLVEARWVFGGMALRDLVTWNSIISA 243

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC- 346
           Y   G V  A+ LF  M   GV P+ LT+ SL SA +     +  +S+H +  ++  +  
Sbjct: 244 YEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASAVAQCGDERGAKSVHCYVRRRGWDVG 303

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
           ++I   A++DMYAK + +  +  VF     +  V WN ++ G + NGL+ +AV ++  M 
Sbjct: 304 DIIAGNAVVDMYAKLSKIDAAQMVFDNLPDRDVVSWNTLITGYMQNGLSNEAVRIYNDMQ 363

Query: 407 V-EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
             E ++P   T  S+LPAY+ L  LQQ M +H   I+ G    V VST LID+Y+KCG L
Sbjct: 364 NHEGLKPIQGTFVSILPAYSNLGALQQGMRMHALSIKTGLNLDVYVSTCLIDLYAKCGKL 423

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
             A  +F  +P +      W+ IIAG G+HGHG  A++LF +M Q G++P+ VTF S L 
Sbjct: 424 VEAMLLFEHMPRRSTG--PWNAIIAGLGVHGHGAKALNLFSQMQQEGIKPDNVTFVSLLA 481

Query: 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           ACSH GL+D+G   F+ M   +     A HY C+VD+LGRAG+LDEA++ I+ MP+KP  
Sbjct: 482 ACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYACMVDMLGRAGQLDEAFEFIQGMPIKPDS 541

Query: 586 AVWGALLGACVIHGNVELGEV 606
           AVWGALLGAC IHGNVEL  +
Sbjct: 542 AVWGALLGACRIHGNVELAAI 562



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 190/368 (51%), Gaps = 15/368 (4%)

Query: 42  SGPLFTHLRSSLVRAYGHVS---NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMF 98
           SG LF  + ++L+  YG +      R +F  M+ R    +N+++  Y Q G    ++++F
Sbjct: 200 SGELF--VCNALIDVYGKLGMLVEARWVFGGMALRDLVTWNSIISAYEQGGKVAAAVELF 257

Query: 99  LGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDM-DTFVGNCLIAMYM 157
            GM++ G  +PD  T   +  A       +   ++H  V   G+D+ D   GN ++ MY 
Sbjct: 258 HGMMKSG-VSPDVLTLVSLASAVAQCGDERGAKSVHCYVRRRGWDVGDIIAGNAVVDMYA 316

Query: 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK-SGVEPDCASVV 216
              ++ AA+ VFD + +  VVSWNTLI+GY +N  + EA+ +++ M    G++P   + V
Sbjct: 317 KLSKIDAAQMVFDNLPDRDVVSWNTLITGYMQNGLSNEAVRIYNDMQNHEGLKPIQGTFV 376

Query: 217 SVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER 276
           S+LPA   L  ++ G  +H L     L  ++     L+D+Y KCG + EA L+F+ M  R
Sbjct: 377 SILPAYSNLGALQQGMRMHALSIKTGLNLDVYVSTCLIDLYAKCGKLVEAMLLFEHMPRR 436

Query: 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
               W ++I G  ++G    AL LF  MQ EG++P+++T  SLL+ACS    + +GRS  
Sbjct: 437 STGPWNAIIAGLGVHGHGAKALNLFSQMQQEGIKPDNVTFVSLLAACSHAGLVDQGRSF- 495

Query: 337 AWTIKQNLECEVIVE---TALIDMYAKCNLVKLSFQ-VFARTSKKKTVPWNAILAGC-VH 391
            + + Q +   V +      ++DM  +   +  +F+ +     K  +  W A+L  C +H
Sbjct: 496 -FDLMQTVYGIVPIAKHYACMVDMLGRAGQLDEAFEFIQGMPIKPDSAVWGALLGACRIH 554

Query: 392 NGLARKAV 399
             +   A+
Sbjct: 555 GNVELAAI 562



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 143/289 (49%), Gaps = 7/289 (2%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHL--RSSLVRAYGHVSNV---RILFDEM 70
           ++ L    A      G K +H ++   G     +   +++V  Y  +S +   +++FD +
Sbjct: 272 LVSLASAVAQCGDERGAKSVHCYVRRRGWDVGDIIAGNAVVDMYAKLSKIDAAQMVFDNL 331

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
            +R    +NT++  Y QNG S+++++++  M       P   T+  ++ A ++L   + G
Sbjct: 332 PDRDVVSWNTLITGYMQNGLSNEAVRIYNDMQNHEGLKPIQGTFVSILPAYSNLGALQQG 391

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           + +H   + TG ++D +V  CLI +Y   G++  A  +F+ M   S   WN +I+G   +
Sbjct: 392 MRMHALSIKTGLNLDVYVSTCLIDLYAKCGKLVEAMLLFEHMPRRSTGPWNAIIAGLGVH 451

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA- 249
            +  +AL +F  M + G++PD  + VS+L AC +   ++ GR   +L+        IA  
Sbjct: 452 GHGAKALNLFSQMQQEGIKPDNVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKH 511

Query: 250 WNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNA 297
           +  +VDM  + G ++EA      M  + D   W +++    ++G+V  A
Sbjct: 512 YACMVDMLGRAGQLDEAFEFIQGMPIKPDSAVWGALLGACRIHGNVELA 560


>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
 gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
 gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
          Length = 767

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 220/639 (34%), Positives = 342/639 (53%), Gaps = 24/639 (3%)

Query: 38  FIITSGPLFTHLRSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDS 94
           F +  G     + SSLV  Y    +VR    LFDEM ER    +  V+     NG   + 
Sbjct: 136 FGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEG 195

Query: 95  LKMFLGMLRL---GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNC 151
           L   + M+R    G   P++ T    ++AC  L    +G  LHG      F +   VG+C
Sbjct: 196 LSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHG------FGVKAGVGHC 249

Query: 152 ------LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
                 L +MY      + AR +F  + E  +VSW +LI  Y +  +A++A+ +F  M +
Sbjct: 250 PSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEE 309

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
           SG++PD   +  +L   G   ++  G+  H  +     G ++   NAL+ MY KC  V+ 
Sbjct: 310 SGLQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDI 369

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF---EGVRPNSLTIGSLLSA 322
           A  VF  + +RD  +W+SM+  Y   G     L L++ MQF   +    ++ ++ S++S+
Sbjct: 370 AATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISS 429

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           CS L  L+ G+S H ++IK        V  ALI MY +C    ++ ++F     K  V W
Sbjct: 430 CSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTW 489

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           +A+++   H G ++ A+ L+ QML E V+PN ATL S++ + A LA L+    IH ++  
Sbjct: 490 SALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKD 549

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
            G    + + T L+D+Y KCG L  A K+F  +   ++D+V W+V+I+GYGMHG    A+
Sbjct: 550 VGLECDLSICTALVDMYMKCGQLGIARKMFDSM--LERDVVTWNVMISGYGMHGEAIQAL 607

Query: 503 SLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDL 562
            LF  M +  V+PN +TF + L AC H GL+D+G +LF  M E +       HY C+VDL
Sbjct: 608 KLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRM-EEYSLEPNLKHYACMVDL 666

Query: 563 LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNY 622
           LG++G L EA D++  MP++P   +WG LLGAC +H N E+G   AK  F  +PEN G Y
Sbjct: 667 LGKSGHLQEAEDVVSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYY 726

Query: 623 VLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +L+S  Y +  +W + E +RD+M   G+ K+   S I++
Sbjct: 727 ILMSNSYGSAEKWNEIEKLRDMMKNHGVEKSIGWSTIDI 765



 Score =  245 bits (626), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 168/583 (28%), Positives = 284/583 (48%), Gaps = 25/583 (4%)

Query: 35  LHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSER---SSFLYNTVMKMYAQ 87
           LHA  +TSG    P F    + LV AY       +     +      +FL+N++++   +
Sbjct: 28  LHALAVTSGLSPRPDFA---AKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHR 84

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF---DM 144
                 +L     M R     P  +T P+V  A  +L    +G A+H   +  G    D 
Sbjct: 85  ASDFASTLSAHRRM-RASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDG 143

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
              V + L+ MY   G V+ A ++FD M E  VV+W  +ISG   N    E L     M+
Sbjct: 144 SVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMV 203

Query: 205 KS----GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           +S    G  P+  ++ S L ACG L E+ +G  +H       +G   +  ++L  MY KC
Sbjct: 204 RSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKC 263

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
            S  +AR++F  + E+D+V+WTS+I  Y   G    A+ LF  M+  G++P+ + I  LL
Sbjct: 264 DSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLL 323

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           +   +   ++ G++ HA  +++N    V++  ALI MYAKC  V ++  VF    ++ T 
Sbjct: 324 AGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTD 383

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI---LADLQQAMNIH 437
            W++++      GL  K +EL+R+M     +  +   NSL+   +    L  L+   + H
Sbjct: 384 SWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAH 443

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
           CY I++       V+  LI +Y +CG+ + A KIF    +K KD+V WS +I+ Y   GH
Sbjct: 444 CYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGM--VKTKDVVTWSALISSYSHLGH 501

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
            + A+ L+ +M+  GV+PN  T  S + +C++   L+ G  + + + +    C  +   T
Sbjct: 502 SKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSI-CT 560

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
            +VD+  + G+L  A  +  +M L+     W  ++    +HG 
Sbjct: 561 ALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHGE 602



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/484 (27%), Positives = 242/484 (50%), Gaps = 9/484 (1%)

Query: 35  LHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           LH F + +G    P       S+        + RILF E+ E+    + +++  Y + G 
Sbjct: 237 LHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGH 296

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
           +  ++++FLGM   G   PD      ++    + A  + G   H  ++   F     +GN
Sbjct: 297 AEKAVELFLGMEESG-LQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGN 355

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML---KSG 207
            LI+MY    +V  A  VF  + +    SW++++  Y K     + L ++  M    K  
Sbjct: 356 ALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDE 415

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
            E D  S++S++ +C  L  + +G+  H        G+N +  NAL+ MY +CG+ + AR
Sbjct: 416 FEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVAR 475

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +F  +  +DVVTW+++I+ Y+  G  ++AL L+  M  EGV+PNS T+ S++S+C++L 
Sbjct: 476 KIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLA 535

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L+ G  +H+      LEC++ + TAL+DMY KC  + ++ ++F    ++  V WN +++
Sbjct: 536 ALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMIS 595

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G   +G A +A++LF  M    V+PN  T  ++L A      + +   +   +  Y    
Sbjct: 596 GYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEP 655

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            ++    ++D+  K G L+ A  + S +PI + D  +W  ++    MH + E  + + K+
Sbjct: 656 NLKHYACMVDLLGKSGHLQEAEDVVSAMPI-EPDGGIWGTLLGACKMHDNFEMGLRVAKK 714

Query: 508 MVQS 511
              S
Sbjct: 715 AFAS 718



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 192/368 (52%), Gaps = 7/368 (1%)

Query: 29  IAGTKQLHAFIITSGPLFTHL-RSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKM 84
           + G K  HA I+      + L  ++L+  Y     V I   +F  + +R +  +++++  
Sbjct: 332 VRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVA 391

Query: 85  YAQNGASHDSLKMFLGML--RLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
           Y + G     L+++  M      E+  D  +   +I +C+ L   +LG + H   +    
Sbjct: 392 YCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLA 451

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
             ++ V N LI+MY   G    ARK+F  +    VV+W+ LIS Y    ++K+AL+++D 
Sbjct: 452 GENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQ 511

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           ML  GV+P+ A++VSV+ +C  L  +E G +IH  V    L  +++   ALVDMY+KCG 
Sbjct: 512 MLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQ 571

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           +  AR +FD M ERDVVTW  MI+GY ++G+   AL LF +M+   V+PNSLT  ++LSA
Sbjct: 572 LGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSA 631

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC-NLVKLSFQVFARTSKKKTVP 381
           C     + +GR L     + +LE  +     ++D+  K  +L +    V A   +     
Sbjct: 632 CCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGI 691

Query: 382 WNAILAGC 389
           W  +L  C
Sbjct: 692 WGTLLGAC 699


>gi|302809659|ref|XP_002986522.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
 gi|300145705|gb|EFJ12379.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
          Length = 625

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 206/585 (35%), Positives = 328/585 (56%), Gaps = 11/585 (1%)

Query: 49  LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           +++SLV AY   G + + R +FD +  +    +N+++  Y+Q+G   + L++F  M    
Sbjct: 44  VKNSLVSAYTRSGDLRSARKVFDSIENKDLISWNSMVVAYSQHGHGEEMLELFRKM---- 99

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
           +  PD+ TY  ++ AC+ +   +LG  +H RV  + F  D  +   LI MY   G +++A
Sbjct: 100 DVEPDSITYASILGACSAMELLELGKEVHARVSRSRFKSDPALAAALINMYSKCGVLESA 159

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           R+VFD +       WN +ISG  ++  A+EAL +F+ M    V  D  S +++L AC  L
Sbjct: 160 RRVFDGIQSVDPSPWNAMISGLVQHGRAREALGLFERMKAESVRIDKVSYLTILSACCAL 219

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER-DVVTWTSM 284
           +++  G  IHE  +   + K++    A+ +MY KC  V+ AR +FD M+E+ +VV+W SM
Sbjct: 220 EDLHEGIRIHEHASACGMDKDLVVETAVFNMYSKCRQVDLARKMFDGMNEKTNVVSWNSM 279

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           I  YA +G  R AL L++LM+ EGV+P+ +T    L AC+S     +G  +H+   +  +
Sbjct: 280 IAAYAQSGRGREALELYELMKEEGVQPDDITYAGALGACTSYGGSAKGAEIHSRITESKI 339

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
             +V ++TA+++MYAKC  ++ +   F +  +K  V W+A++   +  G  R+A++L+ +
Sbjct: 340 RTDVFLDTAIVNMYAKCGELETAMSYFEKMRRKNAVTWSAMVGAFIQQGYDREALDLYLR 399

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL-SVVEVSTGLIDIYSKCG 463
           M+ E  +P++ TL   L A + +  LQ+   IH  +     L + + +   L+++Y+KCG
Sbjct: 400 MVSEGFQPSEITLAGALAACSRIGALQEGKAIHSRIQATETLQNCLFLQNSLLNMYAKCG 459

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            L  A+ +FS +  + +D   W+ II G+  HG  +  +SL  EMVQ GV P+ VTF   
Sbjct: 460 CLAIANTMFSNL--QRRDSFSWNTIIVGHAHHGDVDEVLSLHGEMVQDGVDPDYVTFACV 517

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           L ACSH GLLD G   F  M  ++      DHY C+VD+L RAG   EA  L   MP  P
Sbjct: 518 LLACSHAGLLDRGRSHFLSMTGDYCIKPMLDHYECLVDVLSRAGWAREAEALAMAMPFTP 577

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
               W  LLGAC +HG  + G  AA+ L EL  E   +YVLLS L
Sbjct: 578 RPVTWTTLLGACKLHGETKRGVEAARSLLELGFECSSSYVLLSNL 622



 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 139/431 (32%), Positives = 235/431 (54%), Gaps = 9/431 (2%)

Query: 107 YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR 166
           + P+  T+  V  +C+    R+    +   +  + F  +  V N L++ Y   G++++AR
Sbjct: 6   FRPNGVTFSGVASSCSG---REELDTIQASIAASDFHSNVVVKNSLVSAYTRSGDLRSAR 62

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           KVFD++    ++SWN+++  Y ++ + +E L +F  M    VEPD  +  S+L AC  ++
Sbjct: 63  KVFDSIENKDLISWNSMVVAYSQHGHGEEMLELFRKM---DVEPDSITYASILGACSAME 119

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
            +E+G+ +H  V+  R   + A   AL++MY KCG +  AR VFD +   D   W +MI+
Sbjct: 120 LLELGKEVHARVSRSRFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAMIS 179

Query: 287 GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346
           G   +G  R ALGLF+ M+ E VR + ++  ++LSAC +L  L  G  +H       ++ 
Sbjct: 180 GLVQHGRAREALGLFERMKAESVRIDKVSYLTILSACCALEDLHEGIRIHEHASACGMDK 239

Query: 347 EVIVETALIDMYAKCNLVKLSFQVF-ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
           +++VETA+ +MY+KC  V L+ ++F     K   V WN+++A    +G  R+A+EL+  M
Sbjct: 240 DLVVETAVFNMYSKCRQVDLARKMFDGMNEKTNVVSWNSMIAAYAQSGRGREALELYELM 299

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
             E V+P+D T    L A        +   IH  +      + V + T ++++Y+KCG L
Sbjct: 300 KEEGVQPDDITYAGALGACTSYGGSAKGAEIHSRITESKIRTDVFLDTAIVNMYAKCGEL 359

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
           E+A   F +  ++ K+ V WS ++  +   G+   A+ L+  MV  G QP+E+T   AL 
Sbjct: 360 ETAMSYFEK--MRRKNAVTWSAMVGAFIQQGYDREALDLYLRMVSEGFQPSEITLAGALA 417

Query: 526 ACSHGGLLDEG 536
           ACS  G L EG
Sbjct: 418 ACSRIGALQEG 428



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 210/399 (52%), Gaps = 13/399 (3%)

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           ML  G  P+  +   V  +C   +E++    I   +A      N+   N+LV  Y + G 
Sbjct: 1   MLLEGFRPNGVTFSGVASSCSGREELDT---IQASIAASDFHSNVVVKNSLVSAYTRSGD 57

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           +  AR VFD +  +D+++W SM+  Y+ +G     L LF+ M  E   P+S+T  S+L A
Sbjct: 58  LRSARKVFDSIENKDLISWNSMVVAYSQHGHGEEMLELFRKMDVE---PDSITYASILGA 114

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           CS++  L+ G+ +HA   +   + +  +  ALI+MY+KC +++ + +VF         PW
Sbjct: 115 CSAMELLELGKEVHARVSRSRFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPW 174

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           NA+++G V +G AR+A+ LF +M  E V  +  +  ++L A   L DL + + IH +   
Sbjct: 175 NAMISGLVQHGRAREALGLFERMKAESVRIDKVSYLTILSACCALEDLHEGIRIHEHASA 234

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
            G    + V T + ++YSKC  ++ A K+F  +  K  ++V W+ +IA Y   G G  A+
Sbjct: 235 CGMDKDLVVETAVFNMYSKCRQVDLARKMFDGMNEK-TNVVSWNSMIAAYAQSGRGREAL 293

Query: 503 SLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIV 560
            L++ M + GVQP+++T+  AL AC+  G   +G ++ + + E+     R D +  T IV
Sbjct: 294 ELYELMKEEGVQPDDITYAGALGACTSYGGSAKGAEIHSRITESK---IRTDVFLDTAIV 350

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           ++  + G L+ A      M  K     W A++GA +  G
Sbjct: 351 NMYAKCGELETAMSYFEKMRRKNA-VTWSAMVGAFIQQG 388


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 201/637 (31%), Positives = 345/637 (54%), Gaps = 38/637 (5%)

Query: 33  KQLHAFIITSG---PLFTHLRSSLVRAYGHVS---NVRILFDEMSERSSFLYNTVMKMYA 86
           KQ+H  ++ SG    +F  + ++LV  Y       + + LFDE+ ER+   +N +   Y 
Sbjct: 177 KQVHGVVVVSGFEGDVF--VANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYV 234

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           Q     +++ +F  M+ L    P+ ++   ++ ACT L     G  +HG ++  G+D D 
Sbjct: 235 QXDFCGEAVGLFYEMV-LSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDP 293

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
           F  N L+ MY   G++  A  VF+ + +  +VSWN +I+G   + + ++AL +       
Sbjct: 294 FSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLG----- 348

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
                                 +M R +H  +    +  ++     LVDMY KC  + +A
Sbjct: 349 ----------------------QMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDA 386

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
           R+ F+ + E+D++ W ++I+GY+   +   AL LF  M  EG+  N  T+ ++L + + L
Sbjct: 387 RMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGL 446

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             +   R +H  ++K     ++ V  +LID Y KC+ V+ + ++F   +    V + +++
Sbjct: 447 QVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMI 506

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
                 G   +A++LF +M    ++P+    +SLL A A L+  +Q   +H ++++YGF+
Sbjct: 507 TAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFV 566

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
             +     L+++Y+KCGS++ A + FSE+   ++ IV WS +I G   HGHG  A+ LF 
Sbjct: 567 LDIFAGNSLVNMYAKCGSIDDAGRAFSELT--ERGIVSWSAMIGGLAQHGHGRQALQLFN 624

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           +M++ GV PN +T  S L AC+H GL+ E    F  M E        +HY C++DLLGRA
Sbjct: 625 QMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRA 684

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           G+++EA +L+  MP +   +VWGALLGA  IH +VELG  AA+ LF LEPE  G +VLL+
Sbjct: 685 GKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLA 744

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            +Y++  +W++   VR +M +  ++K P  S IEV++
Sbjct: 745 NIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKD 781



 Score =  261 bits (667), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 181/598 (30%), Positives = 304/598 (50%), Gaps = 58/598 (9%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSG-----PLFTHLRS--SLVRAYGHVSNVRILFDEM 70
           KL+ Q   TKS+    Q+HA I  SG      +  HL +  S  R +G+    R L DE 
Sbjct: 61  KLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYA---RKLVDES 117

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
           SE     ++ ++  YAQNG    +L  F  M  LG    + +T+  V+KAC+ +   ++G
Sbjct: 118 SEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLG-VKCNEFTFSSVLKACSIVKDLRIG 176

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
             +HG V+++GF+ D FV N L+ MY    E   ++++FD + E +VVSWN L S Y + 
Sbjct: 177 KQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQX 236

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
            +  EA+ +F  M+ SG++P+  S+ S++ AC  L++   G++IH  +   +LG +   +
Sbjct: 237 DFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLI--KLGYDWDPF 294

Query: 251 --NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             NALVDMY K G + +A  VF+++ + D+V+W ++I G  L+     AL L   M+   
Sbjct: 295 SANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK--- 351

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
                                   R LH+  +K ++E ++ V   L+DMY+KC+L++ + 
Sbjct: 352 ------------------------RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDAR 387

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
             F    +K  + WNAI++G        +A+ LF +M  E +  N  TL+++L + A L 
Sbjct: 388 MAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQ 447

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            +     +H   ++ GF S + V   LID Y KC  +E A +IF E  I   D+V ++ +
Sbjct: 448 VVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTI--GDLVSFTSM 505

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL------FNF 542
           I  Y  +G GE A+ LF EM    ++P+    +S L+AC++    ++G  L      + F
Sbjct: 506 ITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGF 565

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           +L+     S       +V++  + G +D+A      +  +     W A++G    HG+
Sbjct: 566 VLDIFAGNS-------LVNMYAKCGSIDDAGRAFSELTERGI-VSWSAMIGGLAQHGH 615



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 155/540 (28%), Positives = 259/540 (47%), Gaps = 62/540 (11%)

Query: 99  LGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMN 158
           L ++  G + P + +Y  ++  C      + G+ +H  +  +G   D  + N LI +Y  
Sbjct: 44  LNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSK 103

Query: 159 FGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSV 218
                 ARK+ D   E  +VSW+ LISGY +N     AL+ F  M   GV+ +  +  SV
Sbjct: 104 CRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSV 163

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
           L AC  +K++ +G+ +H +V       ++   N LV MY KC    +++ +FD + ER+V
Sbjct: 164 LKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNV 223

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           V+W ++ + Y        A+GLF  M   G++PN  ++ S+++AC+ L    RG+ +H +
Sbjct: 224 VSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGY 283

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
            IK   + +     AL+DMYAK   +  +  VF +  +   V WNA++AGCV +    +A
Sbjct: 284 LIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQA 343

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
           +EL  QM                              +H  L++    S + VS GL+D+
Sbjct: 344 LELLGQM---------------------------KRQLHSSLMKMDMESDLFVSVGLVDM 376

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           YSKC  LE A   F+ +P  +KD++ W+ II+GY  +     A+SLF EM + G+  N+ 
Sbjct: 377 YSKCDLLEDARMAFNLLP--EKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQT 434

Query: 519 TFTSAL---------HACS--HGGLLDEGL--DLF--NFMLENHQTCSRADH-------- 555
           T ++ L         H C   HG  +  G   D++  N +++++  CS  +         
Sbjct: 435 TLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEEC 494

Query: 556 -------YTCIVDLLGRAGRLDEAYDL---IRTMPLKPTHAVWGALLGACVIHGNVELGE 605
                  +T ++    + G+ +EA  L   ++ M LKP   V  +LL AC      E G+
Sbjct: 495 TIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGK 554



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 150/286 (52%), Gaps = 13/286 (4%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYG---HVSNVRILFDEMSERS 74
           +++  A  + +   +Q+H   + SG     ++ +SL+ +YG   HV +   +F+E +   
Sbjct: 439 ILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGD 498

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
              + +++  YAQ G   ++LK+FL M  + E  PD +    ++ AC +L+  + G  LH
Sbjct: 499 LVSFTSMITAYAQYGQGEEALKLFLEMQDM-ELKPDRFVCSSLLNACANLSAFEQGKQLH 557

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
             +L  GF +D F GN L+ MY   G +  A + F  + E  +VSW+ +I G  ++ + +
Sbjct: 558 VHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGR 617

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM----IHELVAGGRLGKNIAAW 250
           +AL +F+ MLK GV P+  ++VSVL AC +   +   ++    + EL     + ++ A  
Sbjct: 618 QALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYA-- 675

Query: 251 NALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVR 295
             ++D+  + G +NEA  + ++M  E +   W +++    ++ DV 
Sbjct: 676 -CMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVE 720


>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
          Length = 897

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 219/629 (34%), Positives = 340/629 (54%), Gaps = 16/629 (2%)

Query: 51  SSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL--- 104
           SSLV  Y    +VR    LFDEM ER    +  V+     NG   + L   + M+R    
Sbjct: 149 SSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGD 208

Query: 105 GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA 164
           G   P++ T    ++AC  L    +G  LHG  +  G      V + L +MY      + 
Sbjct: 209 GGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTED 268

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
           AR +F  + E  +VSW +LI  Y +  +A++A+ +F  M +SG++PD   +  +L   G 
Sbjct: 269 ARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGN 328

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
             ++  G+  H  +     G ++   NAL+ MY KC  V+ A  VF  + +RD  +W+SM
Sbjct: 329 DAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSM 388

Query: 285 INGYALNGDVRNALGLFQLMQF---EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
           +  Y   G     L L++ MQF   +    ++ ++ S++S+CS L  L+ G+S H ++IK
Sbjct: 389 VVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIK 448

Query: 342 QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVEL 401
                   V  ALI MY +C    ++ ++F     K  V W+A+++   H G ++ A+ L
Sbjct: 449 HLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLL 508

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
           + QML E V+PN ATL S++ + A LA L+    IH ++   G    + + T L+D+Y K
Sbjct: 509 YDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMK 568

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
           CG L  A K+F  +   ++D+V W+V+I+GYGMHG    A+ LF  M +  V+PN +TF 
Sbjct: 569 CGQLGIARKMFDSM--LERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFL 626

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581
           + L AC H GL+D+G +LF  M E +       HY C+VDLLG++G L EA D++  MP+
Sbjct: 627 AILSACCHAGLVDKGRELFTRM-EEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPI 685

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENV 641
           +P   +WG LLGAC +H N E+G   AK  F  +PEN G Y+L+S  Y +  +W + E +
Sbjct: 686 EPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKL 745

Query: 642 RDVMDEKGLRKAPAHSLIEV----RNILT 666
           RD+M   G+ K+   S I++    +N LT
Sbjct: 746 RDMMKNHGVEKSIGWSTIDICGFMKNQLT 774



 Score =  246 bits (627), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 168/583 (28%), Positives = 284/583 (48%), Gaps = 25/583 (4%)

Query: 35  LHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSER---SSFLYNTVMKMYAQ 87
           LHA  +TSG    P F    + LV AY       +     +      +FL+N++++   +
Sbjct: 28  LHALAVTSGLSPRPDFA---AKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHR 84

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF---DM 144
                 +L     M R     P  +T P+V  A  +L    +G A+H   +  G    D 
Sbjct: 85  ASDFASTLSAHRRM-RASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDG 143

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
              V + L+ MY   G V+ A ++FD M E  VV+W  +ISG   N    E L     M+
Sbjct: 144 SVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMV 203

Query: 205 KS----GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           +S    G  P+  ++ S L ACG L E+ +G  +H       +G   +  ++L  MY KC
Sbjct: 204 RSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKC 263

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
            S  +AR++F  + E+D+V+WTS+I  Y   G    A+ LF  M+  G++P+ + I  LL
Sbjct: 264 DSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLL 323

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           +   +   ++ G++ HA  +++N    V++  ALI MYAKC  V ++  VF    ++ T 
Sbjct: 324 AGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTD 383

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI---LADLQQAMNIH 437
            W++++      GL  K +EL+R+M     +  +   NSL+   +    L  L+   + H
Sbjct: 384 SWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAH 443

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
           CY I++       V+  LI +Y +CG+ + A KIF    +K KD+V WS +I+ Y   GH
Sbjct: 444 CYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGM--VKTKDVVTWSALISSYSHLGH 501

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
            + A+ L+ +M+  GV+PN  T  S + +C++   L+ G  + + + +    C  +   T
Sbjct: 502 SKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSI-CT 560

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
            +VD+  + G+L  A  +  +M L+     W  ++    +HG 
Sbjct: 561 ALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHGE 602



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/484 (27%), Positives = 242/484 (50%), Gaps = 9/484 (1%)

Query: 35  LHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           LH F + +G    P       S+        + RILF E+ E+    + +++  Y + G 
Sbjct: 237 LHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGH 296

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
           +  ++++FLGM   G   PD      ++    + A  + G   H  ++   F     +GN
Sbjct: 297 AEKAVELFLGMEESG-LQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGN 355

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML---KSG 207
            LI+MY    +V  A  VF  + +    SW++++  Y K     + L ++  M    K  
Sbjct: 356 ALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDE 415

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
            E D  S++S++ +C  L  + +G+  H        G+N +  NAL+ MY +CG+ + AR
Sbjct: 416 FEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVAR 475

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +F  +  +DVVTW+++I+ Y+  G  ++AL L+  M  EGV+PNS T+ S++S+C++L 
Sbjct: 476 KIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLA 535

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L+ G  +H+      LEC++ + TAL+DMY KC  + ++ ++F    ++  V WN +++
Sbjct: 536 ALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMIS 595

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G   +G A +A++LF  M    V+PN  T  ++L A      + +   +   +  Y    
Sbjct: 596 GYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEP 655

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            ++    ++D+  K G L+ A  + S +PI + D  +W  ++    MH + E  + + K+
Sbjct: 656 NLKHYACMVDLLGKSGHLQEAEDVVSAMPI-EPDGGIWGTLLGACKMHDNFEMGLRVAKK 714

Query: 508 MVQS 511
              S
Sbjct: 715 AFAS 718



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 192/368 (52%), Gaps = 7/368 (1%)

Query: 29  IAGTKQLHAFIITSGPLFTHL-RSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKM 84
           + G K  HA I+      + L  ++L+  Y     V I   +F  + +R +  +++++  
Sbjct: 332 VRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVA 391

Query: 85  YAQNGASHDSLKMFLGML--RLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
           Y + G     L+++  M      E+  D  +   +I +C+ L   +LG + H   +    
Sbjct: 392 YCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLA 451

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
             ++ V N LI+MY   G    ARK+F  +    VV+W+ LIS Y    ++K+AL+++D 
Sbjct: 452 GENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQ 511

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           ML  GV+P+ A++VSV+ +C  L  +E G +IH  V    L  +++   ALVDMY+KCG 
Sbjct: 512 MLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQ 571

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           +  AR +FD M ERDVVTW  MI+GY ++G+   AL LF +M+   V+PNSLT  ++LSA
Sbjct: 572 LGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSA 631

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC-NLVKLSFQVFARTSKKKTVP 381
           C     + +GR L     + +LE  +     ++D+  K  +L +    V A   +     
Sbjct: 632 CCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGI 691

Query: 382 WNAILAGC 389
           W  +L  C
Sbjct: 692 WGTLLGAC 699


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 194/532 (36%), Positives = 320/532 (60%), Gaps = 6/532 (1%)

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGE--VKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           +++TGF       N LIA  ++ G   V  A  VF    E  V++WN+++  +  +   +
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPR 60

Query: 195 EALVVFDWML-KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
            AL  +  ML +S   PD  +  S+L  C  L E ++G+++H  V    L  ++     L
Sbjct: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           ++MY  CG +  AR +F+RM  R+ V WTSMI+GY  N     AL L++ M+ +G  P+ 
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
           +T+ +L+SAC+ L  L  G  LH+   + +++   ++ +AL++MYAKC  +K + QVF +
Sbjct: 181 VTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDK 240

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQML-VEVVEPNDATLNSLLPAYAILADLQQ 432
            S K    W+A++ G V N  + +A++LFR++     + PN+ T+ +++ A A L DL+ 
Sbjct: 241 LSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLET 300

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              +H Y+ R      V ++  LID++SKCG +++A +IF  +    KD++ W+ ++ G+
Sbjct: 301 GRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSY--KDLISWNSMVNGF 358

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
            +HG G  A++ F+ M  + +QP+E+TF   L ACSH GL+ EG  LF  +   +    +
Sbjct: 359 ALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLK 418

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
           ++HY C+VDLL RAG L EA + IR MPL+P  A+WG++LGAC ++ N+ELGE AA++L 
Sbjct: 419 SEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLL 478

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
           +LEP N G Y+LLS +Y+  + W + + VR++M+EKG++K P  S + + NI
Sbjct: 479 KLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNI 530



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 132/457 (28%), Positives = 236/457 (51%), Gaps = 13/457 (2%)

Query: 46  FTHLRSSLVRAYGHVSNVRIL--------FDEMSERSSFLYNTVMKMYAQNGASHDSLKM 97
           F H + SL +   HV ++  L        F    E     +N++++ +  +     +L+ 
Sbjct: 6   FIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQS 65

Query: 98  FLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYM 157
           +  ML      PD +T+P ++K C  L   K+G  LHG+V+      D ++   L+ MY 
Sbjct: 66  YTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYA 125

Query: 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVS 217
             G++K+AR +F+ M   + V W ++ISGY KN    EAL+++  M + G  PD  ++ +
Sbjct: 126 ACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMAT 185

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           ++ AC  LK++ +G  +H  +    +       +ALV+MY KCG +  AR VFD++S++D
Sbjct: 186 LVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKD 245

Query: 278 VVTWTSMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
           V  W+++I GY  N     AL LF ++     +RPN +TI +++SAC+ L  L+ GR +H
Sbjct: 246 VYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVH 305

Query: 337 AWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR 396
            +  +      V +  +LIDM++KC  +  + ++F   S K  + WN+++ G   +GL R
Sbjct: 306 DYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGR 365

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR--YGFLSVVEVSTG 454
           +A+  FR M    ++P++ T   +L A +    +Q+   +  Y I   YG     E    
Sbjct: 366 EALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLF-YEIEALYGVRLKSEHYGC 424

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           ++D+  + G L  A +    +P++  D  +W  ++  
Sbjct: 425 MVDLLCRAGLLAEAREFIRVMPLQ-PDGAIWGSMLGA 460


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 199/540 (36%), Positives = 311/540 (57%), Gaps = 5/540 (0%)

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH--SVVSWNTLIS 185
           K    +H +++I  +    F+ N LI +Y   G +  A  +F     H  ++V+W +LI+
Sbjct: 159 KHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLIT 218

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
                    +AL +F+ M  SG  P+  +  S+L A      +  G+ +H L+       
Sbjct: 219 HLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDA 278

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ-LM 304
           NI    ALVDMY KC  ++ A  VFD+M ER++V+W SMI G+  N     A+G+F+ ++
Sbjct: 279 NIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVL 338

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
           + + V PN +++ S+LSAC+++  L  GR +H   +K  L     V  +L+DMY KC   
Sbjct: 339 REKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFF 398

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
               ++F     +  V WN ++ G V N    +A   F  M  E + P++A+ +++L + 
Sbjct: 399 DEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSS 458

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           A LA L Q   IH  +I+ G++  + +   LI +Y+KCGSL  A+++F    I+D +++ 
Sbjct: 459 ASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFE--GIEDHNVIS 516

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+ +I+ Y +HG     + LF+ M+  G++P+ VTF   L ACSH G ++EGL  FN M 
Sbjct: 517 WTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMK 576

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
           + H      +HY C+VDLLGRAG LDEA   I +MP+KPT +VWGALLGAC  +GN+++G
Sbjct: 577 KIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMG 636

Query: 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
             AA+ LFE+EP NPGNYVLL+ + +   R ++A  VR +M   G+RK P  S I+V+N+
Sbjct: 637 REAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNM 696



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 146/543 (26%), Positives = 253/543 (46%), Gaps = 23/543 (4%)

Query: 13  THLVIKLVQQYAATKSIAGTKQLHAFII----TSGPLFTHLRSSLVRAYGHVSNVRILFD 68
            HL+   +Q    T+S+    Q+H  II    TS P   +   +L    G ++   +LF 
Sbjct: 146 NHLLNTAIQ----TRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFS 201

Query: 69  EMSE--RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
                 ++   + +++   +       +L +F  M   G Y P+ +T+  ++ A      
Sbjct: 202 ITHHHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPY-PNQFTFSSILSASAATMM 260

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
              G  LH  +   GFD + FVG  L+ MY    ++ +A +VFD M E ++VSWN++I G
Sbjct: 261 VLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVG 320

Query: 187 YFKNAYAKEALVVF-DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           +F N     A+ VF D + +  V P+  SV SVL AC  +  +  GR +H +V    L  
Sbjct: 321 FFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVP 380

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
                N+L+DMY KC   +E   +F  + +RDVVTW  ++ G+  N     A   F +M+
Sbjct: 381 LTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMR 440

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            EG+ P+  +  ++L + +SL  L +G ++H   IK      + +  +LI MYAKC  + 
Sbjct: 441 REGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLV 500

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            ++QVF        + W A+++    +G A + +ELF  ML E +EP+  T   +L A +
Sbjct: 501 DAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACS 560

Query: 426 ILADLQQAMNIHCYLIRYGFLSV-VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
               +++ +     + +   ++   E    ++D+  + G L+ A +    +P+K     V
Sbjct: 561 HTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTP-SV 619

Query: 485 WSVIIAG---YGMHGHGETAVSLFKEMVQSGVQP-NEVTFTSALHACSHGGLLDEGLDLF 540
           W  ++     YG    G  A     EM     +P N   +    + C+  G L+E  ++ 
Sbjct: 620 WGALLGACRKYGNLKMGREAAERLFEM-----EPYNPGNYVLLANMCTRSGRLEEANEVR 674

Query: 541 NFM 543
             M
Sbjct: 675 RLM 677


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 208/613 (33%), Positives = 331/613 (53%), Gaps = 16/613 (2%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGE-YNPDNYTYP 115
           +G V +   +FD+M +R+   +N+VM    +NG   +S  +F G+L   E   PD  T  
Sbjct: 244 FGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMV 303

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
            VI  C      +LG+  HG  L  G   +  V + L+ MY   G +  AR +FD   E 
Sbjct: 304 TVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDTN-EK 362

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWM-LKSGVEPDCASVVSVLPACG------YLKEI 228
           +V+SWN++I GY K+   + A  +   M ++  V+ +  ++++VLP C        LKEI
Sbjct: 363 NVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEI 422

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
               + H  +    L       NA V  Y KCGS++ A  VF  M  + V +W ++I G+
Sbjct: 423 HGYALRHGFIQSDEL-----VANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGH 477

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
             NG  R AL L+ LM+  G+ P+  TI SLLSAC+ L  L  G+ +H   ++   E + 
Sbjct: 478 VQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDE 537

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            +  +L+ +Y +C  + L+   F    +K  V WN ++ G   N     A+++F QML  
Sbjct: 538 FICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSS 597

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            + P++ ++   L A + ++ L+    +HC+ ++        V+  LID+Y+KCG +E +
Sbjct: 598 KIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQS 657

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
             IF  + +K +  V W+V+I GYG+HGHG  A+ LFK M  +G +P+ VTF + L AC+
Sbjct: 658 QNIFDRVHLKGE--VTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACN 715

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           H GL+ EGL+    M        + +HY C+VD+LGRAGRL+EA +L+  +P KP   +W
Sbjct: 716 HAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIW 775

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
            +LL +C  + ++++GE  A  L EL P+   NYVL+S  Y+ + +W +   +R  M E 
Sbjct: 776 SSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEI 835

Query: 649 GLRKAPAHSLIEV 661
           GL+K    S IE+
Sbjct: 836 GLQKDAGCSWIEI 848



 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 193/601 (32%), Positives = 324/601 (53%), Gaps = 18/601 (2%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH---LRSSLVRAYGHVS---NVR 64
           K   L+  L+Q     K+I   +++H FI TS P F +   L + LV  Y       +  
Sbjct: 91  KPKQLIGLLLQLCGEYKNIEIGRKIHNFISTS-PHFQNDVVLITRLVTMYSICDSPYDSC 149

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           ++F+    ++ FL+N ++  Y +N    D++ +F+ M+ L E+ PDN+T P VIKAC  +
Sbjct: 150 LVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGV 209

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
              +LG A+HG  L T    D FVGN LIAMY  FG V++A KVFD M + ++VSWN+++
Sbjct: 210 YDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVM 269

Query: 185 SGYFKNAYAKEALVVFDWMLK--SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
               +N   +E+  +F  +L    G+ PD A++V+V+P C    E+ +G + H L     
Sbjct: 270 YACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLG 329

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
           L   +   ++L+DMY KCG + EAR++FD  +E++V++W SMI GY+ + D R A  L +
Sbjct: 330 LCGELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLR 388

Query: 303 LMQFEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN-LECEVIVETALIDMYAK 360
            MQ E  V+ N +T+ ++L  C       + + +H + ++   ++ + +V  A +  YAK
Sbjct: 389 KMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAK 448

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           C  +  +  VF     K    WNA++ G V NG  RKA++L+  M    +EP+  T+ SL
Sbjct: 449 CGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASL 508

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L A A L  L     IH  ++R GF     +   L+ +Y +CG +  A   F    +++K
Sbjct: 509 LSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDN--MEEK 566

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
           ++V W+ +I G+  +     A+ +F +M+ S + P+E++   AL ACS    L  G +L 
Sbjct: 567 NLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELH 626

Query: 541 NFMLENHQTCSRADHYTC-IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            F +++H T       TC ++D+  + G ++++ ++   + LK     W  L+    IHG
Sbjct: 627 CFAVKSHLT--EHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLK-GEVTWNVLITGYGIHG 683

Query: 600 N 600
           +
Sbjct: 684 H 684


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 197/538 (36%), Positives = 304/538 (56%), Gaps = 6/538 (1%)

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS--VVSWNTLIS 185
           K    +H +++ T         N L+ +Y   G +     +F+     S  VV+W TLI+
Sbjct: 114 KHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLIN 173

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
              ++    +AL  F+ M  +G+ P+  +  ++LPAC +   +  G+ IH L+       
Sbjct: 174 QLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLN 233

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           +     AL+DMY KCGS+  A  VFD M  R++V+W SMI G+  N     A+G+F+  +
Sbjct: 234 DPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFR--E 291

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
              + P+ ++I S+LSAC+ L  L  G+ +H   +K+ L   V V+ +L+DMY KC L +
Sbjct: 292 VLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFE 351

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + ++F     +  V WN ++ GC       +A   F+ M+ E VEP++A+ +SL  A A
Sbjct: 352 DATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASA 411

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            +A L Q   IH ++++ G +    +S+ L+ +Y KCGS+  A+++F E   K+ ++V W
Sbjct: 412 SIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRET--KEHNVVCW 469

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I  +  HG    A+ LF+EM+  GV P  +TF S L ACSH G +D+G   FN M  
Sbjct: 470 TAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMAN 529

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
            H      +HY C+VDLLGR GRL+EA   I +MP +P   VWGALLGAC  H NVE+G 
Sbjct: 530 VHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGR 589

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
             A+ LF+LEP+NPGNY+LLS +Y      ++A+ VR +M   G+RK    S I+V+N
Sbjct: 590 EVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKN 647



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 152/523 (29%), Positives = 246/523 (47%), Gaps = 34/523 (6%)

Query: 4   PSHH---TLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLR-SSLVRAY-- 57
           P  H   ++P   HL+       A  KS+    Q+H+ ++T+    +    ++L+  Y  
Sbjct: 89  PKFHQFSSVPDLKHLL----NNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAK 144

Query: 58  -GHVSNVRILFDEMSERSS--FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTY 114
            G + +  +LF+     S+    + T++   +++     +L  F  M   G Y P+++T+
Sbjct: 145 CGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIY-PNHFTF 203

Query: 115 PIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
             ++ AC   A    G  +H  +    F  D FV   L+ MY   G +  A  VFD M  
Sbjct: 204 SAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPH 263

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
            ++VSWN++I G+ KN     A+ VF  +L  G  PD  S+ SVL AC  L E++ G+ +
Sbjct: 264 RNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSACAGLVELDFGKQV 321

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H  +    L   +   N+LVDMY KCG   +A  +F    +RDVVTW  MI G     + 
Sbjct: 322 HGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNF 381

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             A   FQ M  EGV P+  +  SL  A +S+  L +G  +H+  +K        + ++L
Sbjct: 382 EQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSL 441

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           + MY KC  +  ++QVF  T +   V W A++     +G A +A++LF +ML E V P  
Sbjct: 442 VTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEY 501

Query: 415 ATLNSLLPAYAILADLQQAM-------NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
            T  S+L A +    +           N+H   I+ G    +E    ++D+  + G LE 
Sbjct: 502 ITFVSVLSACSHTGKIDDGFKYFNSMANVHN--IKPG----LEHYACMVDLLGRVGRLEE 555

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGH----GETAVSLFK 506
           A +    +P  + D +VW  ++   G H +     E A  LFK
Sbjct: 556 ACRFIESMPF-EPDSLVWGALLGACGKHANVEMGREVAERLFK 597


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 218/639 (34%), Positives = 350/639 (54%), Gaps = 17/639 (2%)

Query: 33  KQLHAFIITSGPLF-THLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+H   + SG L    + +SLV  Y    +    R +FDEM  ++   + +++  YA+N
Sbjct: 124 RQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARN 183

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G + D +   +  +++   NP+ +T+  V+ A  D +  + G+ +H  ++  GF+  TFV
Sbjct: 184 GLN-DEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFV 242

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N LI MY+    V  A  VFD+M     V+WN +I GY    +  E   +F  M  +GV
Sbjct: 243 CNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGV 302

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVA--GGRLGKNIAAWNALVDMYVKCGSVNEA 266
           +       + L  C   +E+   + +H  V   G    ++I    AL+  Y KC SV+EA
Sbjct: 303 KLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT--ALMVTYSKCSSVDEA 360

Query: 267 RLVFDRM-SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
             +F    +  +VVTWT+MI G+  N +   A+ LF  M  EGVRPN  T  ++L+   S
Sbjct: 361 FKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPS 420

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
                    LHA  IK   E    V TAL+D Y K   V  S +VF     K  V W+A+
Sbjct: 421 SLL----SQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAM 476

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA-YAILADLQQAMNIHCYLIRYG 444
           L G      + KA+E+F Q++ E V+PN+ T +S++ A  +  A ++    IH   ++ G
Sbjct: 477 LTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSG 536

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
             + + VS+ L+ +YSK G++ESA K+F+    +++DIV W+ +I GYG HG  + A+ +
Sbjct: 537 KSNALCVSSALLTMYSKKGNIESAEKVFTRQ--EERDIVSWNSMITGYGQHGDAKKALEV 594

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           F+ M   G+  ++VTF   L AC+H GL++EG   FN M++++    + +HY+C+VDL  
Sbjct: 595 FQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYS 654

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
           RAG  D+A D+I  MP   +  +W  LL AC +H N+ELG++AA+ L  L+P +   YVL
Sbjct: 655 RAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVL 714

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           LS +++    W++  +VR +MDE+ ++K    S IE++N
Sbjct: 715 LSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKN 753



 Score =  238 bits (607), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 152/466 (32%), Positives = 234/466 (50%), Gaps = 12/466 (2%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LFDE   +    YN ++  +++N    ++L +F  +   G    D  T    +K C  L 
Sbjct: 60  LFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSG-LGVDGLTLSCALKVCGVLF 118

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
            + +G  +H + L +GF  D  VG  L+ MYM   + +  R +FD M   +VVSW +L+S
Sbjct: 119 DQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLS 178

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY +N    E + + + M   GV P+  +  +VL A      IE G  +H ++       
Sbjct: 179 GYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEF 238

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
                NAL+ MY+K   V +A  VFD M  RD VTW  MI GYA  G       +F  M+
Sbjct: 239 TTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMR 298

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
             GV+ +     + L  CS    L   + LH   +K   E    + TAL+  Y+KC+ V 
Sbjct: 299 LAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVD 358

Query: 366 LSFQVFART-SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
            +F++F+   +    V W A++ G V N    KAV+LF QM  E V PN  T +++L   
Sbjct: 359 EAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGK 418

Query: 425 --AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
             ++L+ L      H  +I+  +  V  V+T L+D Y K G++  + ++F  IP   KDI
Sbjct: 419 PSSLLSQL------HAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPA--KDI 470

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
           V WS ++ G       E A+ +F ++V+ GV+PNE TF+S ++ACS
Sbjct: 471 VAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACS 516



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 211/430 (49%), Gaps = 7/430 (1%)

Query: 163 KAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC 222
           + A ++FD      +  +N L+  + +N + +EAL +F  +  SG+  D  ++   L  C
Sbjct: 55  RYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVC 114

Query: 223 GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
           G L +  +GR +H         ++++   +LVDMY+K     + R +FD M  ++VV+WT
Sbjct: 115 GVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWT 174

Query: 283 SMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           S+++GYA NG     + L   MQ EGV PN  T  ++L A +    ++ G  +HA  +K 
Sbjct: 175 SLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKN 234

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
             E    V  ALI MY K  +V  +  VF     + +V WN ++ G    G   +  ++F
Sbjct: 235 GFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMF 294

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
            +M +  V+ +     + L   +   +L     +HC +++ G+    ++ T L+  YSKC
Sbjct: 295 HRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKC 354

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
            S++ A K+FS +     ++V W+ +I G+  + + E AV LF +M + GV+PN  T+++
Sbjct: 355 SSVDEAFKLFS-MADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYST 413

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
            L       L      +     E   + +     T ++D   + G + E+  +  ++P K
Sbjct: 414 VLAGKPSSLLSQLHAQIIKAYYEKVPSVA-----TALLDAYVKTGNVVESARVFYSIPAK 468

Query: 583 PTHAVWGALL 592
              A W A+L
Sbjct: 469 DIVA-WSAML 477



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 155/337 (45%), Gaps = 3/337 (0%)

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           A  +FD    +D+  +  ++  ++ N   R AL LF+ +   G+  + LT+   L  C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           L+    GR +H  ++K     +V V T+L+DMY K    +    +F     K  V W ++
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           L+G   NGL  + + L  QM +E V PN  T  ++L A A  + ++  + +H  +++ GF
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
                V   LI +Y K   +  A  +F  + ++D   V W+++I GY   G       +F
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDS--VTWNIMIGGYAAIGFYLEGFQMF 294

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
             M  +GV+ +   F +AL  CS    L+    L   +++N    ++ D  T ++    +
Sbjct: 295 HRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQ-DIRTALMVTYSK 353

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
              +DEA+ L            W A++G  V + N E
Sbjct: 354 CSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNE 390


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 221/626 (35%), Positives = 342/626 (54%), Gaps = 44/626 (7%)

Query: 73  RSSFLYNTVMK---MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA--WR 127
           R +  YN+++    ++ + G + D+L+  L      ++   ++T   V+ AC+ LA    
Sbjct: 116 RDAVSYNSLISALCLFRRWGHALDALRDMLA-----DHEVSSFTLVSVLLACSHLADQGH 170

Query: 128 KLGIALHGRVLITGF---DMDTFVGNCLIAMYMNFGEVKAARKVF--DAMWEHSVVSWNT 182
           +LG   H   L  GF     + F  N L++MY   G V  A+++F         +V+WNT
Sbjct: 171 RLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNT 230

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV-AGG 241
           +IS   +    +EA+ V   M+  GV PD  +  S LPAC  L+ + +GR +H  V    
Sbjct: 231 MISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDD 290

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE--RDVVTWTSMINGYALNGDV-RNAL 298
            L  N    +ALVDMY     V+ AR VFD + E  R +  W +MI GYA +G +   A+
Sbjct: 291 DLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAI 350

Query: 299 GLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
            LF  M+ E G  P+  T+  +L AC+         ++H + +K+++     V+ AL+DM
Sbjct: 351 ELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDM 410

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV---------- 407
           YA+   +  +  +FA    +  V WN ++ GC+  GL  +A +L R+M +          
Sbjct: 411 YARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETM 470

Query: 408 ----------EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
                     +   PN+ TL +LLP  A+LA   +   IH Y +R+   S + V + L+D
Sbjct: 471 LEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVD 530

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG-VQPN 516
           +Y+KCG L  A  +F  +P   ++++ W+V+I  YGMHG G+ A++LF  MV +G   PN
Sbjct: 531 MYAKCGCLALARAVFDRLP--RRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPN 588

Query: 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
           EVTF +AL ACSH GL+D GL+LF  M  ++        + C+VD+LGRAGRLDEAY +I
Sbjct: 589 EVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGII 648

Query: 577 RTM-PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRW 635
            +M P +   + W  +LGAC +H NV+LG +AA+ LFELEP+   +YVLL  +YSA   W
Sbjct: 649 SSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLW 708

Query: 636 KDAENVRDVMDEKGLRKAPAHSLIEV 661
           +++  VR +M ++G+ K P  S IE+
Sbjct: 709 ENSTEVRGMMRQRGVAKEPGCSWIEL 734


>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
          Length = 918

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 218/626 (34%), Positives = 338/626 (53%), Gaps = 24/626 (3%)

Query: 51  SSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL--- 104
           SSLV  Y    +VR    LFDEM ER    +  V+     NG   + L   + M+R    
Sbjct: 149 SSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGD 208

Query: 105 GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNC------LIAMYMN 158
           G   P++ T    ++AC  L    +G  LHG      F +   VG+C      L +MY  
Sbjct: 209 GGARPNSRTMESGLEACGVLGELSVGTCLHG------FGVKAGVGHCPSVVSSLFSMYTK 262

Query: 159 FGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSV 218
               + AR +F  + E  +VSW +LI  Y +  +A++A+ +F  M +SG++PD   +  +
Sbjct: 263 CDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCL 322

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
           L   G   ++  G+  H  +     G ++   NAL+ MY KC  V+ A  VF  + +RD 
Sbjct: 323 LAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDT 382

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQF---EGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
            +W+SM+  Y   G     L L++ MQF   +    ++ ++ S++S+CS L  L+ G+S 
Sbjct: 383 DSWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSA 442

Query: 336 HAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLA 395
           H ++IK        V  ALI MY +C    ++ ++F     K  V W+A+++   H G +
Sbjct: 443 HCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHS 502

Query: 396 RKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGL 455
           + A+ L+ QML E V+PN ATL S++ + A LA L+    IH ++   G    + + T L
Sbjct: 503 KDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTAL 562

Query: 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP 515
           +D+Y KCG L  A K+F  +   ++D+V W+V+I+GYGMHG    A+ LF  M +  V+P
Sbjct: 563 VDMYMKCGQLGIARKMFDSM--LERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKP 620

Query: 516 NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDL 575
           N +TF + L AC H GL+D+G +LF  M E +       HY C+VDLLG++G L EA D+
Sbjct: 621 NSLTFLAILSACCHAGLVDKGRELFTRM-EEYSLEPNLKHYACMVDLLGKSGHLQEAEDV 679

Query: 576 IRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRW 635
           +  MP++P   +WG LLGAC +H N E+G   AK  F  +PEN G Y+L+S  Y +  +W
Sbjct: 680 VSAMPIEPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKW 739

Query: 636 KDAENVRDVMDEKGLRKAPAHSLIEV 661
            + E +RD+M   G+ K+   S I++
Sbjct: 740 NEIEKLRDMMKNHGVEKSIGWSTIDI 765



 Score =  244 bits (624), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 168/582 (28%), Positives = 284/582 (48%), Gaps = 25/582 (4%)

Query: 35  LHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSER---SSFLYNTVMKMYAQ 87
           LHA  +TSG    P F    + LV AY       +     +      +FL+N++++   +
Sbjct: 28  LHALAVTSGLSPRPDFA---AKLVSAYSSAGLPALAALAFAASPCPDAFLWNSLLRSRHR 84

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF---DM 144
                 +L     M R     P  +T P+V  A  +L    +G A+H   +  G    D 
Sbjct: 85  ASDFASTLSAHRRM-RASGARPSRFTAPLVASAAAELGALPVGAAVHAYSVRFGLLEGDG 143

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
              V + L+ MY   G V+ A ++FD M E  VV+W  +ISG   N    E L     M+
Sbjct: 144 SVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMV 203

Query: 205 KS----GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           +S    G  P+  ++ S L ACG L E+ +G  +H       +G   +  ++L  MY KC
Sbjct: 204 RSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKC 263

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
            S  +AR++F  + E+D+V+WTS+I  Y   G    A+ LF  M+  G++P+ + I  LL
Sbjct: 264 DSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLL 323

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           +   +   ++ G++ HA  +++N    V++  ALI MYAKC  V ++  VF    ++ T 
Sbjct: 324 AGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTD 383

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI---LADLQQAMNIH 437
            W++++      GL  K +EL+R+M     +  +   NSL+   +    L  L+   + H
Sbjct: 384 SWSSMVVAYCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAH 443

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
           CY I++       V+  LI +Y +CG+ + A KIF    +K KD+V WS +I+ Y   GH
Sbjct: 444 CYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGM--VKTKDVVTWSALISSYSHLGH 501

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
            + A+ L+ +M+  GV+PN  T  S + +C++   L+ G  + + + +    C  +   T
Sbjct: 502 SKDALLLYDQMLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSI-CT 560

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            +VD+  + G+L  A  +  +M L+     W  ++    +HG
Sbjct: 561 ALVDMYMKCGQLGIARKMFDSM-LERDVVTWNVMISGYGMHG 601



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 132/484 (27%), Positives = 242/484 (50%), Gaps = 9/484 (1%)

Query: 35  LHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           LH F + +G    P       S+        + RILF E+ E+    + +++  Y + G 
Sbjct: 237 LHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGH 296

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
           +  ++++FLGM   G   PD      ++    + A  + G   H  ++   F     +GN
Sbjct: 297 AEKAVELFLGMEESG-LQPDEVVISCLLAGLGNDAKVRGGKTFHAAIVRRNFGDSVLIGN 355

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML---KSG 207
            LI+MY    +V  A  VF  + +    SW++++  Y K     + L ++  M    K  
Sbjct: 356 ALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRDKDE 415

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
            E D  S++S++ +C  L  + +G+  H        G+N +  NAL+ MY +CG+ + AR
Sbjct: 416 FEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVAR 475

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +F  +  +DVVTW+++I+ Y+  G  ++AL L+  M  EGV+PNS T+ S++S+C++L 
Sbjct: 476 KIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGVKPNSATLVSVISSCANLA 535

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L+ G  +H+      LEC++ + TAL+DMY KC  + ++ ++F    ++  V WN +++
Sbjct: 536 ALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARKMFDSMLERDVVTWNVMIS 595

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G   +G A +A++LF  M    V+PN  T  ++L A      + +   +   +  Y    
Sbjct: 596 GYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGLVDKGRELFTRMEEYSLEP 655

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            ++    ++D+  K G L+ A  + S +PI + D  +W  ++    MH + E  + + K+
Sbjct: 656 NLKHYACMVDLLGKSGHLQEAEDVVSAMPI-EPDGGIWGTLLGACKMHDNFEMGLRVAKK 714

Query: 508 MVQS 511
              S
Sbjct: 715 AFAS 718



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 117/368 (31%), Positives = 192/368 (52%), Gaps = 7/368 (1%)

Query: 29  IAGTKQLHAFIITSGPLFTHL-RSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKM 84
           + G K  HA I+      + L  ++L+  Y     V I   +F  + +R +  +++++  
Sbjct: 332 VRGGKTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVA 391

Query: 85  YAQNGASHDSLKMFLGML--RLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
           Y + G     L+++  M      E+  D  +   +I +C+ L   +LG + H   +    
Sbjct: 392 YCKAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLA 451

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
             ++ V N LI+MY   G    ARK+F  +    VV+W+ LIS Y    ++K+AL+++D 
Sbjct: 452 GENSSVANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQ 511

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           ML  GV+P+ A++VSV+ +C  L  +E G +IH  V    L  +++   ALVDMY+KCG 
Sbjct: 512 MLTEGVKPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQ 571

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           +  AR +FD M ERDVVTW  MI+GY ++G+   AL LF +M+   V+PNSLT  ++LSA
Sbjct: 572 LGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSA 631

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC-NLVKLSFQVFARTSKKKTVP 381
           C     + +GR L     + +LE  +     ++D+  K  +L +    V A   +     
Sbjct: 632 CCHAGLVDKGRELFTRMEEYSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGI 691

Query: 382 WNAILAGC 389
           W  +L  C
Sbjct: 692 WGTLLGAC 699


>gi|125591533|gb|EAZ31883.1| hypothetical protein OsJ_16048 [Oryza sativa Japonica Group]
          Length = 674

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 220/635 (34%), Positives = 357/635 (56%), Gaps = 28/635 (4%)

Query: 49  LRSSLVRAYG--------HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLG 100
           LR+SL+  Y          V  VR LFD M +R+   +NT+   Y + G   ++L++F+ 
Sbjct: 14  LRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVR 73

Query: 101 MLRLGEYNPDNYTYPIVIKACT--DLAWRKLGIALHGRVLITGFDM--DTFVGNCLIAMY 156
           ML  G + P   ++  +  A    D +W      L+G ++  G +   D FV +  I M+
Sbjct: 74  MLEDG-FRPTPVSFVNIFPAAVADDPSWP---FQLYGLLVKYGVEYINDLFVVSSAIDMF 129

Query: 157 MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP-DCASV 215
             FG+V++AR+VFD   + +   WNT+I+GY +N    EA+ +F  +L S   P D  + 
Sbjct: 130 SEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTF 189

Query: 216 VSVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           +S L A    +++ +G+ +H  L+ G      +   NALV MY +CG+V  A  +FDR+ 
Sbjct: 190 LSALTAASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLP 249

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
           E+D+VTW +M+  +  N      L L   MQ  G   +S+T+ ++LSA S+   L+ G+ 
Sbjct: 250 EKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQ 309

Query: 335 LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA--RTSKKKTVPWNAILAGCVHN 392
            H + I+  +E E + E+ LIDMYAK   V+++ +VF   + +K+  V WNA++AG   +
Sbjct: 310 AHGYLIRHGIEGEGL-ESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQS 368

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAY-AILADLQQAMNIHCYLIRYGFLSVVEV 451
           G   KA+ +FR ML   +EP   TL S+LPA   +   +     IHC+ +R    + V V
Sbjct: 369 GQPEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFV 428

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
            T LID+YSKCG + +A  +F    +  K  V ++ +I+G G HG G+ A++LF  M + 
Sbjct: 429 GTALIDMYSKCGEITTAENVFG--GMTGKSTVTYTTMISGLGQHGFGKKALALFNSMQEK 486

Query: 512 GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571
           G++P+ VTF SA+ AC++ GL+DEGL L+  M ++    +   H+ C+ DLL +AGR++E
Sbjct: 487 GLKPDAVTFLSAISACNYSGLVDEGLALYRSM-DSFGISATPQHHCCVADLLAKAGRVEE 545

Query: 572 AYDLIRTMPLKPTH-AVWGALLGACVIHGNVELGEVAAKWLFELEPE--NPGNYVLLSKL 628
           AY+ I  +  +    A+WG+LL +C   G  EL ++  K L ++E +  + G  VLLS++
Sbjct: 546 AYEFIEGLGEEGNFVAIWGSLLASCKAQGKQELAKLVTKKLLDIEKQYGHAGYSVLLSQV 605

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            +A   W  A+++R  M  +GL+K    S I+V+N
Sbjct: 606 LAAESNWNSADSLRKEMRARGLKKEAGSSWIKVQN 640


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 199/566 (35%), Positives = 314/566 (55%), Gaps = 35/566 (6%)

Query: 133 LHGRVLITGFDMDTFVGNCLI--AMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           +H  ++ TG     F  + LI  +     G++  A  +F+++ E ++  WN++I G   +
Sbjct: 48  IHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMS 107

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
                ALV F  M+ SGVEP+  +   +L +C  L     G+ IH  V       ++   
Sbjct: 108 LSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIH 167

Query: 251 NALVDMYVKCGSVNEARLVFDR-------------------------------MSERDVV 279
            +L++MY + G +N A+LVFD+                               M  +DVV
Sbjct: 168 TSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVV 227

Query: 280 TWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWT 339
           +W +MI GYA  G  + AL LF+ M+   V PN  TI S+LSAC+    L  G S+ +W 
Sbjct: 228 SWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWI 287

Query: 340 IKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAV 399
             + L   + +  ALIDMY+KC  ++ + ++F    ++  + WN ++ G  H    ++A+
Sbjct: 288 EDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEAL 347

Query: 400 ELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459
            LFR+ML   VEP + T  S+LP+ A L  +     IH Y+ +        +ST LID+Y
Sbjct: 348 ALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLY 407

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
           +KCG++ +A ++F  + IK   +  W+ +I G  MHG  + A  LF +M   G++PNE+T
Sbjct: 408 AKCGNIVAARQVFDGMKIKS--LASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEIT 465

Query: 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
           F   L AC H GL+D G   F+ M+++++   ++ HY C++DLLGRAG  +EA  L++ M
Sbjct: 466 FVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNM 525

Query: 580 PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAE 639
            +KP  A+WG+LLGAC  HG VELGE+ A+ LFELEP+NPG YVLLS +Y+   +W D  
Sbjct: 526 EVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVA 585

Query: 640 NVRDVMDEKGLRKAPAHSLIEVRNIL 665
            +R  ++++G++K P  + IEV N++
Sbjct: 586 RIRTRLNDRGMKKVPGCTTIEVDNVV 611



 Score =  245 bits (625), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 169/538 (31%), Positives = 266/538 (49%), Gaps = 49/538 (9%)

Query: 7   HTLPKTTHLVIKLVQQYAATK------SIAGTKQLHAFIITSG------PLFTHLRSSLV 54
           H LP ++    +++Q++ + K      SI   KQ+HA II +G       L   +  S V
Sbjct: 15  HVLP-SSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAV 73

Query: 55  RAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTY 114
              G +S    LF+ + E + F++N++++  + + +   +L  F+ M+  G   P++YT+
Sbjct: 74  SRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSG-VEPNSYTF 132

Query: 115 PIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD---- 170
           P ++K+C  LA    G  +H  VL  GF  D F+   LI MY   GE+  A+ VFD    
Sbjct: 133 PFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNF 192

Query: 171 -------------AMWEH--------------SVVSWNTLISGYFKNAYAKEALVVFDWM 203
                        A+W +               VVSWN +I+GY +   +KEAL++F+ M
Sbjct: 193 RDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDM 252

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
            K+ V P+ +++VSVL AC     +++G  +   +    L  N+   NAL+DMY KCG +
Sbjct: 253 RKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDL 312

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
             AR +FD M ERDV++W  MI GY      + AL LF+ M   GV P  +T  S+L +C
Sbjct: 313 QTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSC 372

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
           + L  +  G+ +HA+  K        + T+LID+YAKC  +  + QVF     K    WN
Sbjct: 373 AHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWN 432

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--YAILADLQQAMNIHCYLI 441
           A++ G   +G A KA ELF +M  + +EPN+ T   +L A  +A L DL Q       + 
Sbjct: 433 AMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQF-FSSMVQ 491

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            Y      +    +ID+  + G  E A  +   + +K  D  +W  ++     HG  E
Sbjct: 492 DYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVK-PDGAIWGSLLGACRDHGRVE 548


>gi|115473985|ref|NP_001060591.1| Os07g0670000 [Oryza sativa Japonica Group]
 gi|22831115|dbj|BAC15976.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
 gi|50510078|dbj|BAD30730.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
 gi|113612127|dbj|BAF22505.1| Os07g0670000 [Oryza sativa Japonica Group]
 gi|125559550|gb|EAZ05086.1| hypothetical protein OsI_27276 [Oryza sativa Indica Group]
          Length = 726

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 230/669 (34%), Positives = 344/669 (51%), Gaps = 23/669 (3%)

Query: 2   NGPSHHTLPKTTHLVIKLVQQYAATKS--IAGTKQLHAFIITSG-PLFTHLRSSLVRAY- 57
           +G  H +L +  H  +  +   AA ++   A    LHA  +T+G   F  + +SL   Y 
Sbjct: 21  DGIPHPSLAR--HRRVNPIAFSAAVRASDPASLPALHAVAVTTGLHGFAAVTNSLAARYA 78

Query: 58  --GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
             G   +   +F     R    YNT++  +       ++L     MLR G   PD  T  
Sbjct: 79  KTGSFPSAVGVFAAARARDVSSYNTILSAFPDPA---EALDFASWMLRSGAVRPDAVTCT 135

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           + +          L   LH     +G   D FVGN L+  Y   G +  AR VFD M   
Sbjct: 136 VALSLAAGRGEGFLVRQLHALAWRSGLAADVFVGNALVTAYSRGGSLGEARSVFDDMPAR 195

Query: 176 SVVSWNTLISGYFKNA-YAKEALVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRM 233
            +VSWN LI G  ++     E + VF  ML+ G V+PD  SV SV+PACG   ++E+GR 
Sbjct: 196 DLVSWNALICGLAQDGDCPAEVIGVFLRMLRDGDVQPDRISVCSVIPACGGEGKLELGRQ 255

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           +H       +   ++  N LV MY KCG+   AR +FD MSERDVV+WT+     A++ D
Sbjct: 256 VHGFAVKLGVEGYVSIGNVLVAMYYKCGAPGSARRLFDAMSERDVVSWTT-----AISMD 310

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
             +AL LF  M+ +GV PN +T  +L+SA  +    +  + +HA  +K  +  E     +
Sbjct: 311 GEDALTLFNGMRRDGVPPNEVTFVALMSALPADCPARGAQMVHAACLKAAVSGEAAASNS 370

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           LI MYAK   +  +  VF    +++ + WNA+++G   NG    A+ELF  M    + PN
Sbjct: 371 LITMYAKARRMDDARMVFDLMPRREIIAWNAVISGYAQNGRCNDALELFSSM-ARCLTPN 429

Query: 414 DATLNSLLPAYAILADLQQAMN--IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           + T  S+L A   +  +  A     H   +  GF     V+  LID+Y+K G+LE + K 
Sbjct: 430 ETTFASVLSAVTAVETVSMAYGQMYHSRALSMGFGDSEYVAGALIDMYAKRGNLEESRKA 489

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F E   + + ++ W+ II+    HG     +SLF +M +SGV P+ V   + L AC +GG
Sbjct: 490 FHET--EQRSLIAWTAIISANARHGSYGAVMSLFGDMARSGVAPDGVVLLAVLTACRYGG 547

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
           ++D G D+F+ M  +       +HY+C+VD+LGRAGRL EA +L+  MP  P+ +   +L
Sbjct: 548 MVDAGRDIFDSMAADRGVELWPEHYSCVVDMLGRAGRLAEAEELMMRMPAGPSVSALQSL 607

Query: 592 LGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651
           LGAC IHG+ E+GE  A+ L E EP   G YVLLS +Y+ V  W     VR  M ++G++
Sbjct: 608 LGACRIHGDAEIGERIARILTEKEPTESGAYVLLSNIYADVGDWDGVAKVRRKMRDRGVK 667

Query: 652 KAPAHSLIE 660
           K    S ++
Sbjct: 668 KEIGFSWVD 676


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1724

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 204/563 (36%), Positives = 317/563 (56%), Gaps = 6/563 (1%)

Query: 102 LRLGEYNP---DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMN 158
           L+L   NP   D   Y  +++ C D   +K G  +H  ++  GF  D  +   LI  Y+ 
Sbjct: 18  LKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVK 77

Query: 159 FGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSV 218
            G+V AAR VFD M E SVVSW  ++SGY +N   ++A V+F  M   GV+ +  +  S 
Sbjct: 78  VGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSA 137

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
           L AC  L+ ++MG  +   +  GR  +N+   +ALVD + KCG + +A  +F  M ERDV
Sbjct: 138 LRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDV 197

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           V+W +MI GYA+ G   ++  +F+ M   G+ P+  T+GS+L A +    L     +H  
Sbjct: 198 VSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGI 257

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL-ARK 397
             +       IV   LI+ YAK   ++ +  +     KK      A++ G  H G+ +  
Sbjct: 258 ITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVD 317

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
           A++LF++M    +  +D  L S+L   A LA       IH + ++Y     V +   LID
Sbjct: 318 ALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALID 377

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
           +Y+K G +E A + F E+  ++K+++ W+ +I+GY  HG+G  AVSL+K+M   G +PN+
Sbjct: 378 MYAKSGEIEDAKRAFDEM--EEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPND 435

Query: 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIR 577
           VTF S L ACSH GL  EG + FN M+  +    RA+HY+C+VDL  R G L+EAY+L+ 
Sbjct: 436 VTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLC 495

Query: 578 TMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKD 637
            + +K   ++WGA+LGA  I+G + LG+ AA  LF ++PEN  NYV+L+ +YSA   W D
Sbjct: 496 KIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLWDD 555

Query: 638 AENVRDVMDEKGLRKAPAHSLIE 660
           A  +R +M+E+  +K   +S  +
Sbjct: 556 AWKIRKLMEERSTKKNAGYSFFQ 578



 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 199/617 (32%), Positives = 329/617 (53%), Gaps = 12/617 (1%)

Query: 52   SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
            S+  ++  V     +FD M+E     +N ++  YA +G   +SL+ F  M  L  +N  N
Sbjct: 990  SMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHL--HNETN 1047

Query: 112  YT----YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
             T       V  +  +L W   G  +HG V+  G D +  + N L+ +Y   G  + A  
Sbjct: 1048 STTLSSLLSVCSSVDNLKW---GRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAEL 1104

Query: 168  VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
            VF AM E  ++SWN++++ Y ++    + L +   +L+ G   +  +  S L AC   + 
Sbjct: 1105 VFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPEC 1164

Query: 228  IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
            +   +++H L+        +   NALV MY K G + EA+ V   M + D VTW ++I G
Sbjct: 1165 LIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGG 1224

Query: 288  YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY-YLKRGRSLHAWTIKQNLEC 346
            +A N +   A+  ++L++ +G+  N +T+ S+L ACS+    LK G  +HA  +    E 
Sbjct: 1225 HAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFES 1284

Query: 347  EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
            +  V+ +LI MYAKC  +  S  +F     K  + WNA++A   H+G   +A+++F +M 
Sbjct: 1285 DDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMR 1344

Query: 407  VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
               V  +  + +  L A A LA L++   +H  +I+ GF S + V+   +D+Y KCG + 
Sbjct: 1345 NVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMH 1404

Query: 467  SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
               K+  + PI ++  + W+++I+ +  HG  + A   F EM++ G +P+ VTF S L A
Sbjct: 1405 DVLKMLPQ-PI-NRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSA 1462

Query: 527  CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
            C+HGGL+DEGL  ++ M          +H  CI+DLLGR+GRL  A   I+ MP+ P   
Sbjct: 1463 CNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDL 1522

Query: 587  VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646
             W +LL AC IHGN+EL    A+ L EL+P +   YVL S + +   +W+D EN+R  M 
Sbjct: 1523 AWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMG 1582

Query: 647  EKGLRKAPAHSLIEVRN 663
               ++K PA S +++++
Sbjct: 1583 SNNIKKQPACSWVKLKD 1599



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 175/608 (28%), Positives = 300/608 (49%), Gaps = 27/608 (4%)

Query: 34   QLHAFIITSGPLF-THLRSSLVRAYGHVS---NVRILFDEMSERSSFLYNTVMKMYAQNG 89
            Q+H F++ +G L   ++ ++LV  YG +    N + LF+EM + +   + ++M  Y+ +G
Sbjct: 867  QVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSG 926

Query: 90   ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
               + L ++  M + G     N T+  V  +C  L  + LG  + G ++  GF+    V 
Sbjct: 927  NPGEVLNVYQRMRQEGVSGNQN-TFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVA 985

Query: 150  NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
            N LI+M+ +F  V+ A  VFD M E  ++SWN +IS Y  +   +E+L  F WM     E
Sbjct: 986  NSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNE 1045

Query: 210  PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
             +  ++ S+L  C  +  ++ GR IH LV    L  N+   N L+ +Y + G   +A LV
Sbjct: 1046 TNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELV 1105

Query: 270  FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
            F  M+ERD+++W SM+  Y  +G   + L +   +   G   N +T  S L+ACS+   L
Sbjct: 1106 FQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECL 1165

Query: 330  KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
               + +HA  I       +IV  AL+ MY K  ++  + +V     +   V WNA++ G 
Sbjct: 1166 IESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGH 1225

Query: 390  VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD-LQQAMNIHCYLIRYGFLSV 448
              N    +AV+ ++ +  + +  N  T+ S+L A +   D L+  M IH +++  GF S 
Sbjct: 1226 AENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESD 1285

Query: 449  VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
              V   LI +Y+KCG L S++ IF    + +K  + W+ ++A    HG GE A+ +F EM
Sbjct: 1286 DYVKNSLITMYAKCGDLNSSNYIFD--GLGNKSPITWNAMVAANAHHGCGEEALKIFGEM 1343

Query: 509  VQSGVQPNEVTFTSALHACSHGGLLDEGLDL------FNFMLENHQTCSRADHYTCIVDL 562
               GV  ++ +F+  L A ++  +L+EG  L        F  + H T +  D Y      
Sbjct: 1344 RNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMY------ 1397

Query: 563  LGRAGRLDEAYDLIRTM--PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620
                G+  E +D+++ +  P+  +   W  L+ A   HG  +        + +L P+ P 
Sbjct: 1398 ----GKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPK-PD 1452

Query: 621  NYVLLSKL 628
            +   +S L
Sbjct: 1453 HVTFVSLL 1460



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 154/533 (28%), Positives = 260/533 (48%), Gaps = 31/533 (5%)

Query: 118  IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
            +K  +++  +  G ALH   ++   ++  F  N LI MY  FG ++ AR VFD M   + 
Sbjct: 751  LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 810

Query: 178  VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC---GYLKEIEMGRMI 234
             SW+T++SGY +    +EA+ +F  M   GVEP+   V S++ AC   GY+ +   G  +
Sbjct: 811  ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMAD--EGFQV 868

Query: 235  HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
            H  V    +  ++    ALV  Y   G V  A+ +F+ M + +VV+WTS++ GY+ +G+ 
Sbjct: 869  HGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNP 928

Query: 295  RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
               L ++Q M+ EGV  N  T  ++ S+C  L     G  +    I+   E  V V  +L
Sbjct: 929  GEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSL 988

Query: 355  IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
            I M++  + V+ +  VF   ++   + WNA+++   H+GL R+++  F  M     E N 
Sbjct: 989  ISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 1048

Query: 415  ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
             TL+SLL   + + +L+    IH  +++ G  S V +   L+ +YS+ G  E A  +F  
Sbjct: 1049 TTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQ- 1107

Query: 475  IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
              + ++D++ W+ ++A Y   G     + +  E++Q G   N VTF SAL ACS+   L 
Sbjct: 1108 -AMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLI 1166

Query: 535  EG---------LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
            E              +F++  +           +V + G+ G + EA  +++TMP +P  
Sbjct: 1167 ESKIVHALIIVAGFHDFLIVGN----------ALVTMYGKLGMMMEAKKVLQTMP-QPDR 1215

Query: 586  AVWGALLGACVIHG-NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKD 637
              W AL+G    H  N E  E    +    E   P NY+ +  +  A     D
Sbjct: 1216 VTWNALIGG---HAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDD 1265



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 151/542 (27%), Positives = 264/542 (48%), Gaps = 19/542 (3%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---RILFDEM 70
           L +K++Q     K+      +H  +IT+G     HL + L+  Y  V +V   R +FD M
Sbjct: 32  LYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGM 91

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
            ERS   +  ++  Y+QNG    +  +F  M   G    + +TY   ++ACT L    +G
Sbjct: 92  PERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCG-VKANQFTYGSALRACTSLRCLDMG 150

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           I + G +    F  + FV + L+  +   G+++ A  +F  M E  VVSWN +I GY   
Sbjct: 151 IQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQ 210

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
            +A ++  +F  ML+ G+ PDC ++ SVL A      + +   IH ++     G      
Sbjct: 211 GFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVT 270

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR-NALGLFQLMQFEGV 309
             L++ Y K GS+  A+ +   M ++D+ + T++I GYA  G    +AL LF+ M    +
Sbjct: 271 GLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNI 330

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
             + + + S+L+ C++L     G  +HA+ +K     +V +  ALIDMYAK   ++ + +
Sbjct: 331 GMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKR 390

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
            F    +K  + W ++++G   +G    AV L+++M  +  +PND T  SLL  +A    
Sbjct: 391 AFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLL--FACSHT 448

Query: 430 LQQAMNIHCY---LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
              A    C+   + +Y      E  + ++D++++ G LE A+ +  +I IK  +  +W 
Sbjct: 449 GLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIK-HNASLWG 507

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQS--GVQP-NEVTFTSALHACSHGGLLDEGLDLFNFM 543
            I+    ++G+    +SL KE   +   +QP N V +       S  GL D+   +   M
Sbjct: 508 AILGASSIYGY----MSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLM 563

Query: 544 LE 545
            E
Sbjct: 564 EE 565


>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 206/585 (35%), Positives = 315/585 (53%), Gaps = 39/585 (6%)

Query: 114 YPI--VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
           +PI  ++ ACT       G  LH +V+  G D +  + + L+  Y N   +  A+ V ++
Sbjct: 82  HPIGSLLLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTES 141

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
                 + WN LIS Y +N +  EAL V+  ML   +EPD  +  SVL ACG   +   G
Sbjct: 142 SNTLDPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNSG 201

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
             +H  +    +  ++   NALV MY + G +  AR +FD M  RD V+W ++I+ YA  
Sbjct: 202 LEVHRSIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASR 261

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSL-------------------------------- 319
           G  + A  LF  MQ EGV  N +   ++                                
Sbjct: 262 GIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIHLDAIAMV 321

Query: 320 --LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
             L+ACS +  +K G+ +H   ++   +    V+ ALI MY++C  +  +F +F RT +K
Sbjct: 322 VGLNACSHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEK 381

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             + WNA+L+G  H     +   LFR+ML E +EPN  T+ S+LP  A +A+LQ     H
Sbjct: 382 GLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFH 441

Query: 438 CYLIRYG-FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           CY++++  F   + +   L+D+YS+ G +  A K+F  +  +D+  V ++ +I GYGM G
Sbjct: 442 CYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSLTKRDE--VTYTSMILGYGMKG 499

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
            GET + LF+EM +  ++P+ VT  + L ACSH GL+ +G  LF  M++ H    R +HY
Sbjct: 500 EGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQVLFKRMIDVHGIVPRLEHY 559

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
            C+ DL GRAG L++A + I  MP KPT A+W  LLGAC IHGN E+GE AA  L E++P
Sbjct: 560 ACMADLFGRAGLLNKAKEFITGMPYKPTSAMWATLLGACRIHGNTEMGEWAAGKLLEMKP 619

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           ++ G YVL++ +Y+A   W+    VR  M   G+RKAP  + ++V
Sbjct: 620 DHSGYYVLIANMYAAAGSWRKLAEVRTYMRNLGVRKAPGCAWVDV 664



 Score =  198 bits (504), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 145/519 (27%), Positives = 252/519 (48%), Gaps = 54/519 (10%)

Query: 27  KSIAGTKQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDE--MSERSSFL--- 77
           KS++  KQLHA +I+ G    P+   L S LV  Y   +NV +L D   ++E S+ L   
Sbjct: 95  KSLSQGKQLHAQVISLGLDQNPI---LVSRLVNFY---TNVNLLVDAQFVTESSNTLDPL 148

Query: 78  -YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGR 136
            +N ++  Y +NG   ++L ++  ML   +  PD YTYP V+KAC +      G+ +H  
Sbjct: 149 HWNLLISAYVRNGFFVEALCVYKNMLN-KKIEPDEYTYPSVLKACGESLDFNSGLEVHRS 207

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEA 196
           +  +  +   FV N L++MY  FG+++ AR +FD M     VSWNT+IS Y      KEA
Sbjct: 208 IEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYASRGIWKEA 267

Query: 197 LVVFDWMLKSGVEP----------------------------------DCASVVSVLPAC 222
             +F  M + GVE                                   D  ++V  L AC
Sbjct: 268 FQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIHLDAIAMVVGLNAC 327

Query: 223 GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
            ++  I++G+ IH               NAL+ MY +C  +  A ++F R  E+ ++TW 
Sbjct: 328 SHIGAIKLGKEIHGHAVRTCFDVFDNVKNALITMYSRCRDLGHAFILFHRTEEKGLITWN 387

Query: 283 SMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK- 341
           +M++GYA          LF+ M  EG+ PN +TI S+L  C+ +  L+ G+  H + +K 
Sbjct: 388 AMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKH 447

Query: 342 QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVEL 401
           +  E  +++  AL+DMY++   V  + +VF   +K+  V + +++ G    G     ++L
Sbjct: 448 KQFEEYLLLWNALVDMYSRSGRVLEARKVFDSLTKRDEVTYTSMILGYGMKGEGETTLKL 507

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYS 460
           F +M    ++P+  T+ ++L A +    + Q   +   +I  +G +  +E    + D++ 
Sbjct: 508 FEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQVLFKRMIDVHGIVPRLEHYACMADLFG 567

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           + G L  A +  + +P K     +W+ ++    +HG+ E
Sbjct: 568 RAGLLNKAKEFITGMPYKPTS-AMWATLLGACRIHGNTE 605



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 122/261 (46%), Gaps = 4/261 (1%)

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSL--TIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           +  +  +G + NA   F  +Q      + L   IGSLL AC+    L +G+ LHA  I  
Sbjct: 51  LKDFVTHGHLTNAFKTFFQIQHHAASSHLLLHPIGSLLLACTHFKSLSQGKQLHAQVISL 110

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
            L+   I+ + L++ Y   NL+  +  V   ++    + WN +++  V NG   +A+ ++
Sbjct: 111 GLDQNPILVSRLVNFYTNVNLLVDAQFVTESSNTLDPLHWNLLISAYVRNGFFVEALCVY 170

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
           + ML + +EP++ T  S+L A     D    + +H  +        + V   L+ +Y + 
Sbjct: 171 KNMLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIEASSMEWSLFVHNALVSMYGRF 230

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G LE A  +F  +P +D   V W+ II+ Y   G  + A  LF  M + GV+ N + + +
Sbjct: 231 GKLEIARHLFDNMPRRDS--VSWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVIIWNT 288

Query: 523 ALHACSHGGLLDEGLDLFNFM 543
               C H G     L L + M
Sbjct: 289 IAGGCLHSGNFRGALQLISQM 309


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 214/648 (33%), Positives = 338/648 (52%), Gaps = 12/648 (1%)

Query: 27  KSIAGTKQLHAFIITSGPLF-THLRSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVM 82
           K +   + LHA I+ +G    T + +SL+  Y    H S   ++FD ++ +    +N ++
Sbjct: 24  KQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINNKDVVSWNCLI 83

Query: 83  KMYAQNGASHDSLKMFLGMLRL----GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
             ++Q  A   SL +     +L        P+ +T   V  A + L+  + G   H   +
Sbjct: 84  NAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAV 143

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
            T    D F  + L+ MY   G V  AR +FD M E + VSW T+ISGY     A EA  
Sbjct: 144 KTACSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFE 203

Query: 199 VFDWML--KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
           +F  M   + G   +     SVL A      +  GR +H L     L   ++  NALV M
Sbjct: 204 LFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTM 263

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           YVKCGS+ +A   F+    ++ +TW++M+ G+A  GD   AL LF  M   G  P+  T+
Sbjct: 264 YVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTL 323

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
             +++ACS    +  GR +H +++K   E ++ V +AL+DMYAKC  +  + + F    +
Sbjct: 324 VGVINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARKGFECIQQ 383

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
              V W +I+ G V NG    A+ L+ +M +  V PND T+ S+L A + LA L Q   +
Sbjct: 384 PDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQM 443

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H  +I+Y F   + + + L  +Y+KCGSL+  ++IF  +P   +D++ W+ +I+G   +G
Sbjct: 444 HAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPA--RDVISWNAMISGLSQNG 501

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
            G   + LF++M   G +P+ VTF + L ACSH GL+D G   F  M +        +HY
Sbjct: 502 RGNEGLELFEKMCLEGTKPDNVTFVNLLSACSHMGLVDRGWVYFKMMFDEFNIAPTVEHY 561

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
            C+VD+L RAG+L EA + I +  +     +W  LL A   H + +LG  A + L EL  
Sbjct: 562 ACMVDILSRAGKLHEAKEFIESATVDHGLCLWRILLAASKNHRDYDLGAYAGEKLMELGS 621

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
                YVLLS +Y+A+ +W+D E VR +M  +G+ K P  S IE++++
Sbjct: 622 LESSAYVLLSSIYTALGKWEDVERVRGMMKARGVTKEPGCSWIELKSL 669


>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
 gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Cucumis sativus]
          Length = 712

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 204/636 (32%), Positives = 341/636 (53%), Gaps = 47/636 (7%)

Query: 70  MSERSSFLYNTV---MKMYAQNGASHDSLKMFLGMLRLGEYNPDNY-----TYPIVIKAC 121
           +S  S F+  ++   +K +A +G    S + F  +++L     D++     +  I++ +C
Sbjct: 31  VSNSSEFMIGSIFSSLKDFASHGQLSKSFEAF-SLIQLRTSYNDSFDLILQSISILLVSC 89

Query: 122 TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWN 181
           T  +    G  LHG ++ +G   D+F+ + L+  Y +   +  A  + +        SWN
Sbjct: 90  TKSSSLPPGKQLHGHIISSGLVEDSFLVSKLVMFYSSLEFLPEAHTLVETSNLFRPCSWN 149

Query: 182 TLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG 241
            LI+ Y K+   + A++ +  M+  GV PD  +  S+L ACG  + ++ G  +H+ +   
Sbjct: 150 ILITSYVKHKLYEAAILAYKQMVSKGVRPDNFTFPSILKACGETQNLKFGLEVHKSINSW 209

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
               ++   NAL+ MY +CG V+ AR +FD M ERD V+W SMI+ Y+  G  R A  LF
Sbjct: 210 STPWSLFVHNALISMYGRCGEVDTARNLFDNMLERDAVSWNSMISCYSSRGMWREAFELF 269

Query: 302 QLMQFEGVRPNSLT----------IGSL-------------------------LSACSSL 326
           + MQ + +  N +T          +G+                          L ACS +
Sbjct: 270 ESMQSKCLEINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHI 329

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             ++ G+ +H +TI+        V+ AL+ MYA+C  ++ ++ +F     K  + WN++L
Sbjct: 330 GAIRLGKEIHGFTIRHYHHMLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNSML 389

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY-GF 445
           +G  H G   +A+ LFR++L+  VEP+  T  S+LP  A +ADLQ     HCY+ ++  F
Sbjct: 390 SGLTHLGRVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITKHRDF 449

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
              + +   L+D+Y++ G +  A +IF  +  KD+  V ++ +IAGYGM G G  AV LF
Sbjct: 450 RDHLLLWNALVDMYARAGKVSEAKRIFYSLSKKDE--VTYTSLIAGYGMQGEGGKAVRLF 507

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
           +EM +  ++P+ +T  + L ACSH GL+++   LF  M   H    R +HY C+ DL GR
Sbjct: 508 EEMKRFQIKPDHITMIAVLSACSHSGLVNQAELLFAEMQSVHGLSPRLEHYACMADLFGR 567

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
            G L++A ++I  MP +PT A+W  L+GAC IHGN+++GE AA+ L E+ PE+ G YVL+
Sbjct: 568 VGLLNKAKEIITRMPYRPTSAIWATLIGACCIHGNMDIGEWAAEKLLEMRPEHSGYYVLI 627

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           + +Y+A   W     +R +M + G+ K P  S ++V
Sbjct: 628 ANMYAAAGSWSKLAEIRTLMRDSGVAKIPGCSWVDV 663



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 146/530 (27%), Positives = 246/530 (46%), Gaps = 52/530 (9%)

Query: 26  TKSIAGTKQLHAFIITSGPLF-THLRSSLVRAYGHVSNVRILFD--EMSERSSFL----Y 78
           + S+   KQLH  II+SG +  + L S LV  Y   S++  L +   + E S+      +
Sbjct: 92  SSSLPPGKQLHGHIISSGLVEDSFLVSKLVMFY---SSLEFLPEAHTLVETSNLFRPCSW 148

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
           N ++  Y ++     ++  +  M+  G   PDN+T+P ++KAC +    K G+ +H  + 
Sbjct: 149 NILITSYVKHKLYEAAILAYKQMVSKG-VRPDNFTFPSILKACGETQNLKFGLEVHKSIN 207

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
                   FV N LI+MY   GEV  AR +FD M E   VSWN++IS Y      +EA  
Sbjct: 208 SWSTPWSLFVHNALISMYGRCGEVDTARNLFDNMLERDAVSWNSMISCYSSRGMWREAFE 267

Query: 199 VFD-------------W----------------------MLKSGVEPDCASVVSVLPACG 223
           +F+             W                      M   G+  D  +++  L AC 
Sbjct: 268 LFESMQSKCLEINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACS 327

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
           ++  I +G+ IH               NALV MY +C  +  A ++F    ++  +TW S
Sbjct: 328 HIGAIRLGKEIHGFTIRHYHHMLSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNS 387

Query: 284 MINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK-Q 342
           M++G    G V  AL LF+ +   GV P+ +T  S+L  C+ +  L+ GR  H +  K +
Sbjct: 388 MLSGLTHLGRVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITKHR 447

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
           +    +++  AL+DMYA+   V  + ++F   SKK  V + +++AG    G   KAV LF
Sbjct: 448 DFRDHLLLWNALVDMYARAGKVSEAKRIFYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLF 507

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSK 461
            +M    ++P+  T+ ++L A +    + QA  +   +   +G    +E    + D++ +
Sbjct: 508 EEMKRFQIKPDHITMIAVLSACSHSGLVNQAELLFAEMQSVHGLSPRLEHYACMADLFGR 567

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH---GETAVSLFKEM 508
            G L  A +I + +P +     +W+ +I    +HG+   GE A     EM
Sbjct: 568 VGLLNKAKEIITRMPYRPTS-AIWATLIGACCIHGNMDIGEWAAEKLLEM 616


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 199/531 (37%), Positives = 304/531 (57%), Gaps = 8/531 (1%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           LHG  +  G+  DTFV + L  +Y        ARKVFD +     + WNTL++G      
Sbjct: 136 LHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGL----P 191

Query: 193 AKEALVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
             EAL  F  M+ +G V PD  ++ S L A      + MGR +H       L ++     
Sbjct: 192 GSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVT 251

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            L+ +Y KCG ++ A+ +FDRM   D+V + ++I+GY++NG V +++ LF+ +   G RP
Sbjct: 252 GLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRP 311

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           NS T+ +++   S   +    R LHA+ +K  L+ + +V TAL  +Y + N ++ +  +F
Sbjct: 312 NSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIF 371

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
               +K    WNA+++G   NGL   AV LF+ M    V+PN  T++S L A A L  L 
Sbjct: 372 DAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALS 431

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               +H  + +      V V T LID+Y+KCGS+  A  IF  +   +K++V W+ +I+G
Sbjct: 432 LGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRM--DNKNVVSWNAMISG 489

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           YG+HG G  A+ L+K+M+ + + P   TF S ++ACSHGGL+DEG  +F  M   ++   
Sbjct: 490 YGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITP 549

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT-HAVWGALLGACVIHGNVELGEVAAKW 610
             +H TC+VDLLGRAG+L+EA +LI   P       VWGALLGAC++H N +L ++A++ 
Sbjct: 550 GIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQK 609

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           LFEL+ EN G YVLLS LY++ + + +A  VR     + L K P  +LIE+
Sbjct: 610 LFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEI 660



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/478 (29%), Positives = 241/478 (50%), Gaps = 11/478 (2%)

Query: 30  AGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVS---NVRILFDEMSERSSFLYNTVMKMY 85
           A  + LH   + +G    T + S+L + Y  +S   + R +FD +    + L+NT++   
Sbjct: 131 AAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGL 190

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
             +    ++L+ F+ M+  G   PD+ T    ++A  + +   +G  +HG  +  G    
Sbjct: 191 PGS----EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEH 246

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
             V   L+++Y   G++ +A+ +FD M    +V++N LISGY  N   + ++ +F  +  
Sbjct: 247 EHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTA 306

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
           SG  P+ +++V+V+P         + R +H  V   RL  +     AL  +Y +   +  
Sbjct: 307 SGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMES 366

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           AR +FD M E+ + +W +MI+GYA NG    A+ LFQLMQ   V+PN +TI S LSAC+ 
Sbjct: 367 ARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAH 426

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           L  L  G+ +H    K+ LE  V V TALIDMYAKC  +  +  +F R   K  V WNA+
Sbjct: 427 LGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAM 486

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--YAILADLQQAMNIHCYLIRY 443
           ++G   +G   +A++L++ ML   + P  +T  S++ A  +  L D  Q +        Y
Sbjct: 487 ISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKV-FRVMTNEY 545

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
                +E  T ++D+  + G L  A ++ SE P       VW  ++    +H + + A
Sbjct: 546 RITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLA 603


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 197/547 (36%), Positives = 308/547 (56%), Gaps = 11/547 (2%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           +IK C  L   K   +LH  +L +   +   +   LIA Y + G +  A  +F      +
Sbjct: 10  LIKQCVTLEALK---SLHASILKS--HLHPHLCTSLIAQYASLGSISHAYALFSTSHSSN 64

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V  WN +I  +    +++ +L ++  ML+ G++    +   +L ACG L + E+G   H 
Sbjct: 65  VFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHA 124

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            V       ++   N+L+ MY + G  + +R VF+RM ER+VV+W+SM+  YA NG    
Sbjct: 125 HVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEE 184

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
            L LF  M  EG+ PN    GS+++A + ++            I   L+ +  V+ A + 
Sbjct: 185 GLLLFWRMLNEGIAPNR---GSIVNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAMG 241

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MYA+C  + ++ + F     K  V W +++   V   L   A+ELF+QM +  + P+  T
Sbjct: 242 MYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVT 301

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           L SL+ A + LA  Q A  +H  + R  F + + + T +ID+Y KCG+LE A K F  + 
Sbjct: 302 LLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMS 361

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
            ++  ++ WS +I+GYGMHGHG  A+ LF +M ++ ++P+ + F   L ACSHGGL+ EG
Sbjct: 362 ARN--LISWSTMISGYGMHGHGREALCLFDQM-KASIKPDHIAFVMVLSACSHGGLIAEG 418

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
            + F  M  +     R +HY C+VDLLGRAGRL EA   I  MP+ P   VWGALLGAC 
Sbjct: 419 WECFKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACR 478

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           IH N+E  E AA+ LF L+ ENPG Y+LLS +Y++  + K+A+++R +M  +G+RK   H
Sbjct: 479 IHSNLETAETAARHLFNLDAENPGRYILLSNIYASSGKRKEADDIRALMKSRGVRKTVGH 538

Query: 657 SLIEVRN 663
           ++IE++N
Sbjct: 539 TIIEIKN 545



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 154/517 (29%), Positives = 270/517 (52%), Gaps = 15/517 (2%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVRILFDEMSER 73
           I L++Q    +++   K LHA I+ S  L  HL +SL+  Y   G +S+   LF      
Sbjct: 8   IALIKQCVTLEAL---KSLHASILKS-HLHPHLCTSLIAQYASLGSISHAYALFSTSHSS 63

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           + FL+N +++ ++    S +SL+++  ML+LG     N+T+P ++KAC  LA  +LG   
Sbjct: 64  NVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLG-IQATNFTFPFLLKACGCLADFELGARA 122

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H  V++ G++ D FV N L+AMY  FG    +R+VF+ M E +VVSW++++  Y  N   
Sbjct: 123 HAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRY 182

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
           +E L++F  ML  G+ P+  S+V+ + AC + +E E       ++  G L  + +  NA 
Sbjct: 183 EEGLLLFWRMLNEGIAPNRGSIVNAM-ACIH-REHEADDFCRVVIDNG-LDSDQSVQNAA 239

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           + MY +CG ++ AR  F  + ++D+V WTSMI  Y       NAL LF+ M+  G+ P+S
Sbjct: 240 MGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDS 299

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
           +T+ SL+ A S+L   +  R +H    +   +  + ++TA+ID+Y KC  ++ + + F R
Sbjct: 300 VTLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDR 359

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
            S +  + W+ +++G   +G  R+A+ LF QM    ++P+      +L A +    + + 
Sbjct: 360 MSARNLISWSTMISGYGMHGHGREALCLFDQMKAS-IKPDHIAFVMVLSACSHGGLIAEG 418

Query: 434 MNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
                 + R +G     E    ++D+  + G L  A      +PI   D  VW  ++   
Sbjct: 419 WECFKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPIT-PDAGVWGALLGAC 477

Query: 493 GMHGHGETAVSLFKEMVQSGVQ-PNEVTFTSALHACS 528
            +H + ETA +  + +     + P      S ++A S
Sbjct: 478 RIHSNLETAETAARHLFNLDAENPGRYILLSNIYASS 514


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 211/641 (32%), Positives = 342/641 (53%), Gaps = 16/641 (2%)

Query: 35  LHAFIITSGP---LFTHLRSSLVRAYGHVS-NVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           +HA I+ + P   LF  LR++L+ AY  +  + R L DEM   ++  +N ++  Y++ G 
Sbjct: 36  VHAHIVRAHPSPSLF--LRNTLLAAYCRLGGHARRLLDEMPRTNAVSFNLLIDAYSRAGQ 93

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
              SL+ F    R      D +TY   + AC+     + G A+H   ++ G     FV N
Sbjct: 94  PEASLETFARARRSAGVRADRFTYAAALAACSRAGRLREGKAVHALSVLEGIAGGVFVSN 153

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            L++MY   G++  AR+VFDA  E   VSWN L+SGY +     + L VF  M +SG+  
Sbjct: 154 SLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGAQDDMLRVFAMMRRSGIGL 213

Query: 211 DCASVVSVLPACGYLKE--IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +  ++ SV+  C    +  +++   +H  V       ++   +A+V MY K G+++EA  
Sbjct: 214 NSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLASAMVGMYAKKGALSEAVA 273

Query: 269 VFDRMSERDVVTWTSMINGY-----ALNGDV-RNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           +F  + + +VV + +MI G      A+  DV R AL L+  +Q  G+ P   T  S++ A
Sbjct: 274 LFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRA 333

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           C+    ++ G+ +H   +K   + +  + +ALID+Y     ++  F+ F    K+  V W
Sbjct: 334 CNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTW 393

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
            A+++GCV N L  +A+ LF ++L   ++P+  T++S++ A A LA  +    I C+  +
Sbjct: 394 TAMISGCVQNELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTGEQIQCFATK 453

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
            GF     +    I +Y++ G + +A + F E+  +  DIV WS +I+ +  HG    A+
Sbjct: 454 SGFGRFTAMGNSCIHMYARSGDVHAAVRRFQEM--ESHDIVSWSAVISSHAQHGCARDAL 511

Query: 503 SLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDL 562
             F EMV + V PNE+TF   L ACSHGGL+DEGL  +  M E +       H TC+VDL
Sbjct: 512 RFFNEMVDAKVVPNEITFLGVLTACSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDL 571

Query: 563 LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNY 622
           LGRAGRL +A   IR         +W +LL +C IH ++E G++ A  + EL+P +  +Y
Sbjct: 572 LGRAGRLADAEAFIRDSIFHDEPVIWRSLLASCRIHRDMERGQLVADRIMELQPSSSASY 631

Query: 623 VLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           V L  +Y        A  +RDVM E+G++K P  S IE+R+
Sbjct: 632 VNLYNIYLDAGELSLASKIRDVMKERGVKKEPGLSWIELRS 672


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 199/609 (32%), Positives = 321/609 (52%), Gaps = 2/609 (0%)

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
           H+ + R LFD++ +R    +  ++  Y  +  S ++L++F  M    E   D +   + +
Sbjct: 64  HLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGL 123

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
           K C        G  LHG  + TG     FVG+ L+ MYM  GE+  + KVFD M   + V
Sbjct: 124 KTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAV 183

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           +W  +I+G  +  Y++  L  F  M +S VE D  +    L A      +  GR IH   
Sbjct: 184 TWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQT 243

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
                 +N    N+L  MY KCG ++     F +M   DVV+WT+++  Y   G     L
Sbjct: 244 LKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGL 303

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
             F+ M+   V PN  T  +++S C++   LK G  LHA  +       + V  +++ +Y
Sbjct: 304 QAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLY 363

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
           +KC  +    +VF     +  + W+ I+A     G   +A E   +M  E  +PN+  L 
Sbjct: 364 SKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALA 423

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           S+L     +A L+Q   +H +++  G      V + LI +Y+KCGS+  A KIF +   K
Sbjct: 424 SVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMD-SWK 482

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
           D DI+ W+ +I+GY  HGH + A+ LF+ + + G++P+ VTF   L ACSH G++D G  
Sbjct: 483 D-DIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFY 541

Query: 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
            FN M +++      +HY C++DLL RAGRL +A  LIR+MP++    VW  LL AC IH
Sbjct: 542 YFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIH 601

Query: 599 GNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSL 658
           G+V+ G+ AA  + +L+P   G ++ L+ +++A  +WK+A N+R +M  KG+ K P  S 
Sbjct: 602 GDVDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSS 661

Query: 659 IEVRNILTA 667
           ++V++ + A
Sbjct: 662 VKVKDSVFA 670



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/495 (27%), Positives = 218/495 (44%), Gaps = 36/495 (7%)

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
           +D    N  + + +    +K AR +FD + +   VSW  +ISGY  ++ + EAL +F  M
Sbjct: 47  VDLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKM 106

Query: 204 -LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
            L+S +  D   +   L  CG       G  +H       L  ++   +AL+DMY+K G 
Sbjct: 107 RLQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGE 166

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           +  +  VFD M  R+ VTWT++I G    G     L  F  M    V  +S      L A
Sbjct: 167 IGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKA 226

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
            +    L  GRS+H  T+K+  +    V  +L  MY KC  +      F +      V W
Sbjct: 227 SADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSW 286

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
             I+   +  G     ++ F++M    V PN+ T ++++   A  A L+    +H +++ 
Sbjct: 287 TTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLC 346

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
            GF++ + V+  ++ +YSKCG L S  K+F    +K +DI+ WS IIA Y   G+GE A 
Sbjct: 347 VGFVNALSVANSIMTLYSKCGELASVSKVF--CSMKFRDIITWSTIIAAYSQVGYGEEAF 404

Query: 503 SLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML-----ENHQTCS------ 551
                M   G +PNE    S L  C    +L++G  L   +L     +    CS      
Sbjct: 405 EYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMY 464

Query: 552 -----------------RAD--HYTCIVDLLGRAGRLDEAYDL---IRTMPLKPTHAVWG 589
                            + D   +T ++      G   EA +L   I+ + L+P    + 
Sbjct: 465 AKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFI 524

Query: 590 ALLGACVIHGNVELG 604
            +L AC   G V+LG
Sbjct: 525 GVLTACSHAGMVDLG 539



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 177/382 (46%), Gaps = 22/382 (5%)

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           ++A  N  + + VK   + +AR +FD++ +RD V+WT++I+GY  + D   AL LF  M+
Sbjct: 48  DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMR 107

Query: 306 FEG---VRPNSLTIGSLLSACS-SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
            +    + P  L++G  L  C   L YL  G +LH +++K  L   V V +AL+DMY K 
Sbjct: 108 LQSELRIDPFLLSLG--LKTCGLGLNYL-YGTNLHGFSVKTGLVNSVFVGSALLDMYMKI 164

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
             +  S +VF     +  V W A++ G V  G +   +  F  M    VE +       L
Sbjct: 165 GEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIAL 224

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            A A    L    +IH   ++ GF     V+  L  +Y+KCG L+     F +  ++  D
Sbjct: 225 KASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRK--MRTLD 282

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           +V W+ I+  Y   G  +  +  FK M  S V PNE TF++ +  C++   L  G  L  
Sbjct: 283 VVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHA 342

Query: 542 FML----ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
            +L     N  + + +     I+ L  + G L     +  +M  +     W  ++ A   
Sbjct: 343 HVLCVGFVNALSVANS-----IMTLYSKCGELASVSKVFCSMKFRDI-ITWSTIIAA--- 393

Query: 598 HGNVELGEVAAKWLFELEPENP 619
           +  V  GE A ++L  +  E P
Sbjct: 394 YSQVGYGEEAFEYLSRMRSEGP 415


>gi|116310930|emb|CAH67868.1| B0403H10-OSIGBa0105A11.20 [Oryza sativa Indica Group]
          Length = 804

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 220/635 (34%), Positives = 357/635 (56%), Gaps = 28/635 (4%)

Query: 49  LRSSLVRAYG--------HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLG 100
           LR+SL+  Y          V  VR LFD M +R+   +NT+   Y + G   ++L++F+ 
Sbjct: 144 LRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVR 203

Query: 101 MLRLGEYNPDNYTYPIVIKACT--DLAWRKLGIALHGRVLITGFDM--DTFVGNCLIAMY 156
           ML  G + P   ++  +  A    D +W      L+G ++  G +   D FV +  I M+
Sbjct: 204 MLEDG-FRPTPVSFVNIFPAAVADDPSW---PFQLYGLLVKYGVEYINDLFVVSSAIDMF 259

Query: 157 MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP-DCASV 215
             FG+V++AR+VFD   + +   WNT+I+GY +N    EA+ +F  +L S   P D  + 
Sbjct: 260 SEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTF 319

Query: 216 VSVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           +S L A    +++ +G+ +H  L+ G      +   NALV MY +CG+V  A  +FDR+ 
Sbjct: 320 LSALTAASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLP 379

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
           E+D+VTW +M+  +  N      L L   MQ  G   +S+T+ ++LSA S+   L+ G+ 
Sbjct: 380 EKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQ 439

Query: 335 LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA--RTSKKKTVPWNAILAGCVHN 392
            H + I+  +E E + E+ LIDMYAK   V+++ +VF   + +K+  V WNA++AG   +
Sbjct: 440 AHGYLIRHGIEGEGL-ESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQS 498

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAY-AILADLQQAMNIHCYLIRYGFLSVVEV 451
           G   KA+ +FR ML   +EP   TL S+LPA   +   +     IHC+ +R    + V V
Sbjct: 499 GQPEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFV 558

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
            T LID+YSKCG + +A  +F    +  K  V ++ +I+G G HG G+ A++LF  M + 
Sbjct: 559 GTALIDMYSKCGEITTAENVFG--GMTGKSTVTYTTMISGLGQHGFGKKALALFNSMQEK 616

Query: 512 GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571
           G++P+ VTF SA+ AC++ GL+DEGL L+  M ++    +   H+ C+ DLL +AGR++E
Sbjct: 617 GLKPDAVTFLSAISACNYSGLVDEGLALYRSM-DSFGISATPQHHCCVADLLAKAGRVEE 675

Query: 572 AYDLIRTMPLKPTH-AVWGALLGACVIHGNVELGEVAAKWLFELEPE--NPGNYVLLSKL 628
           AY+ I  +  +    A+WG+LL +C   G  EL ++  K L ++E +  + G  VLLS++
Sbjct: 676 AYEFIEGLGEEGNFVAIWGSLLASCKAQGKQELAKLVTKKLLDIEKQYGHAGYSVLLSQV 735

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            +A   W  A+++R  M  +GL+K    S I+V+N
Sbjct: 736 LAAESNWNSADSLRKEMRARGLKKEAGSSWIKVQN 770



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 160/544 (29%), Positives = 264/544 (48%), Gaps = 21/544 (3%)

Query: 58  GHVSNVRILFDEMSERS--SFLYNTVMKMYAQNGASHDSLKM--FLGMLRLGEYNPDNYT 113
           G + + R L  E   R   + L N ++  YA      ++L++   L          D+YT
Sbjct: 48  GRLDHARRLLLEALPRPPPTLLCNALLIAYADRALQEEALRLNALLNHAARPPVRSDHYT 107

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDM-DTFV-GNCLIAMYMNF-----GEVKAAR 166
           Y   + AC      +LG ++H  +L     + DT V  N L+ +Y +        V   R
Sbjct: 108 YSAALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREARVDVVR 167

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           ++FDAM + +VVSWNTL   Y K    +EAL +F  ML+ G  P   S V++ PA     
Sbjct: 168 RLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAAVADD 227

Query: 227 EIEMGRMIHELVAGG-RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
                ++   LV  G     ++   ++ +DM+ + G V  AR VFDR ++++   W +MI
Sbjct: 228 PSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMI 287

Query: 286 NGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK-QN 343
            GY  NG    A+ LF +++    V  + +T  S L+A S    +  G+ LH + IK  +
Sbjct: 288 TGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIKGMH 347

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
               VI+  AL+ MY++C  V+ +F +F R  +K  V WN ++   + N    + + L  
Sbjct: 348 RTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVY 407

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
           +M       +  TL ++L A +   DLQ     H YLIR+G +    + + LID+Y+K G
Sbjct: 408 EMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHG-IEGEGLESYLIDMYAKSG 466

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            +E A ++F       +D V W+ +IAGY   G  E A+ +F+ M+++G++P  VT  S 
Sbjct: 467 RVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASV 526

Query: 524 LHACSH-GGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMP 580
           L AC   GG +  G  +  F +   + C   + +  T ++D+  + G +  A ++   M 
Sbjct: 527 LPACDPVGGGVYSGKQIHCFAV---RRCLDTNVFVGTALIDMYSKCGEITTAENVFGGMT 583

Query: 581 LKPT 584
            K T
Sbjct: 584 GKST 587



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 147/298 (49%), Gaps = 14/298 (4%)

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK--QNLECEVIVETALIDMYAKC----- 361
           VR +  T  + L+AC+    L+ GRS+HA  ++  ++L    ++  +L+++YA       
Sbjct: 101 VRSDHYTYSAALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRYRE 160

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
             V +  ++F    K+  V WN +    V  G  ++A+ELF +ML +   P   +  ++ 
Sbjct: 161 ARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIF 220

Query: 422 PAYAILADLQQAMNIHCYLIRYG--FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           PA A+  D      ++  L++YG  +++ + V +  ID++S+ G ++SA ++F     K+
Sbjct: 221 PA-AVADDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKN 279

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP-NEVTFTSALHACSHGGLLDEGLD 538
            +  VW+ +I GY  +G    A+ LF +++ S   P + VTF SAL A S    +  G  
Sbjct: 280 TE--VWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQ 337

Query: 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
           L  ++++             +V +  R G +  A+DL   +P K     W  ++ A +
Sbjct: 338 LHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDI-VTWNTMVTAFI 394


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 210/645 (32%), Positives = 346/645 (53%), Gaps = 20/645 (3%)

Query: 35  LHAFIITSGPLFT-HLRSSLVRAY-----GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +HA I  + P  +  LR+SL+ AY     G   +   L DEM  R++  YN ++  Y++ 
Sbjct: 21  VHAHIARAHPTASLFLRNSLLAAYCRLGVGAPLHAARLIDEMPRRNAVSYNLLISSYSRA 80

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G    +L+ F           D +TY   + AC+     + G A+H   ++ G     F+
Sbjct: 81  GLPGRALETFARARAAAGLRVDRFTYAAALAACSRALDLRTGKAVHAMTVLDGLGNGVFL 140

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L +MY + GE+  AR+VFDA  EH  VSWN+L+SGY +    +E L VF  M   G+
Sbjct: 141 SNSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHHGL 200

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAG----GRLGKNIAAWNALVDMYVKCGSVN 264
             +  ++ S++  C    ++  GR I E V G      L  ++   +A++DMY K G++ 
Sbjct: 201 GWNSFALGSIIKCCASGSDV--GRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALT 258

Query: 265 EARLVFDRMSERDVVTWTSMINGY-----ALNGDV-RNALGLFQLMQFEGVRPNSLTIGS 318
            A  +F  + + +V+ + +MI G+     A+  +V R AL L+  MQ  G++P+  T  S
Sbjct: 259 NAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSEFTFSS 318

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           +L AC+       G+ +H   +K +   +  + +ALID+Y+    ++  ++ F    K+ 
Sbjct: 319 ILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPKQD 378

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
            V W ++++GCV N L  KA+ LF++ +   ++P+  T++S++ A A LA  +    I C
Sbjct: 379 IVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLFTMSSVMNACASLAVARTGEQIQC 438

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
             I+YGF     +    I + ++ G +++  + F E+  + +D+V WS +I+ +  HG  
Sbjct: 439 LAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEM--ESRDVVSWSAVISSHAQHGCA 496

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
             A+ +F EM+ + V PNEVTF + L ACSHGGL+D+GL  +  M   +       H TC
Sbjct: 497 RDALRIFNEMMNAKVAPNEVTFLNVLTACSHGGLVDDGLRYYEIMKNEYGLSPTIKHVTC 556

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
           +VDLLGRAGRL +A   IR         VW +LL +C IHG++E G++ A  + +LEP +
Sbjct: 557 VVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIHGDMERGQLVADQIMDLEPTS 616

Query: 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
             +YV+L  +Y        A   RD+M E+G++K P  S IE+R+
Sbjct: 617 SASYVILYNMYLDAGELSLASKTRDLMKERGVKKEPGLSWIELRS 661


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 191/511 (37%), Positives = 295/511 (57%), Gaps = 7/511 (1%)

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
           C +A  M++     ARK+FD M +  V  WNTLI GY      +EAL ++  M  +G+ P
Sbjct: 72  CCLAPTMDY-----ARKMFDQMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFP 126

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D  +   V+ +C  L  +  G+ +H  +       ++   ++LV MY + G      LVF
Sbjct: 127 DNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVF 186

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
             M  R++V+WT++I GY  N   +  LG+F+ M   G +PN++T+ S+L AC+ L +L 
Sbjct: 187 GEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLN 246

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
            G+ +H + IK  ++ +V +  ALI +Y KC  V+ +  +F     +  V WNA++A   
Sbjct: 247 LGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYE 306

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
            N     AV+LFR+M  E V+ +  T+ S++ A A L  L     +H  + R G    V 
Sbjct: 307 QNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVS 366

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           ++  LID+Y+KCG+++ A ++F  +P   + +V W+ +I     HGHGE A+ LF  M  
Sbjct: 367 ITNALIDMYAKCGNIDLAREVFERLPC--RSVVSWTSMIGACASHGHGEDALKLFSRMKD 424

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
            GV+PN  TF +   AC H GL++EG   F  M+ ++      +H  C+VDLLGRAG L 
Sbjct: 425 EGVKPNSFTFAAVFTACRHSGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLM 484

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630
           EAY+ I  MP++P  +VWGALLG+C IH N+EL E+ A+ LF L+P+    YVL+S +Y+
Sbjct: 485 EAYEFIDKMPVEPDVSVWGALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYA 544

Query: 631 AVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
              RW+DA  +R +M+E+ L+K P HSL+EV
Sbjct: 545 EAGRWEDAARLRKLMEERELKKIPGHSLVEV 575



 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 168/501 (33%), Positives = 279/501 (55%), Gaps = 14/501 (2%)

Query: 28  SIAGTKQLHAFIITSGP-----LFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVM 82
           S+    ++HA ++T+G      L T L  +       +   R +FD+M +R  FL+NT++
Sbjct: 41  SLPDLSRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFLWNTLI 100

Query: 83  KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
           + YA  G   ++L ++  M   G + PDNYT+P V+++C  L+  + G  +H  ++  GF
Sbjct: 101 RGYADAGPCEEALALYSNMHGAGLF-PDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGF 159

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
           D D FV + L+AMY   GE      VF  M   ++VSW  +I+GY +N Y KE L VF  
Sbjct: 160 DSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFRE 219

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG--KNIAAWNALVDMYVKC 260
           M+ SG +P+  ++VSVLPAC  L+ + +G++IH    G +LG   +++  NAL+ +Y KC
Sbjct: 220 MVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGY--GIKLGVDPDVSLTNALIALYGKC 277

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           G+V  AR +FD M  +++V+W +MI  Y  N    NA+ LF+ MQ E V  + +T+ S++
Sbjct: 278 GNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVI 337

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           SAC+SL  L  GR +H    ++ LE  V +  ALIDMYAKC  + L+ +VF R   +  V
Sbjct: 338 SACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVV 397

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            W +++  C  +G    A++LF +M  E V+PN  T  ++  A      +++       +
Sbjct: 398 SWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFESM 457

Query: 441 IR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           +R Y  +  VE    ++D+  + GSL  A++   ++P+ + D+ VW  ++    +H + E
Sbjct: 458 MRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPV-EPDVSVWGALLGSCRIHSNLE 516

Query: 500 TAVSLFKEMVQSGVQPNEVTF 520
            A  + +++    + P  VTF
Sbjct: 517 LAELVAEKLFL--LDPQTVTF 535



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 135/426 (31%), Positives = 218/426 (51%), Gaps = 20/426 (4%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GH 59
           P ++T P        +V+  A   ++   K++H  I+  G      ++SSLV  Y   G 
Sbjct: 126 PDNYTFPF-------VVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGE 178

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
              + ++F EM  R+   +  V+  Y QN    + L +F  M+  G   P+  T   V+ 
Sbjct: 179 TLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGT-QPNAVTLVSVLP 237

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           AC  L +  LG  +HG  +  G D D  + N LIA+Y   G V+ AR +FD M   ++VS
Sbjct: 238 ACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVS 297

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WN +I+ Y +N     A+ +F  M    V+ D  ++VSV+ AC  L  +  GR +HELV 
Sbjct: 298 WNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVK 357

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
              L  N++  NAL+DMY KCG+++ AR VF+R+  R VV+WTSMI   A +G   +AL 
Sbjct: 358 RKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVSWTSMIGACASHGHGEDALK 417

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE--TALIDM 357
           LF  M+ EGV+PNS T  ++ +AC     ++ GR  H  ++ ++      VE    ++D+
Sbjct: 418 LFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRK-HFESMMRDYSIMPGVEHCACMVDL 476

Query: 358 YAKCNLVKLSFQVFARTSKKKTVP-WNAILAGC-VHNGLARKAVELFRQMLVEVVEPNDA 415
             +   +  +++   +   +  V  W A+L  C +H+ L  +  EL  + L  +++P   
Sbjct: 477 LGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNL--ELAELVAEKLF-LLDPQTV 533

Query: 416 TLNSLL 421
           T   L+
Sbjct: 534 TFYVLM 539


>gi|115460348|ref|NP_001053774.1| Os04g0602600 [Oryza sativa Japonica Group]
 gi|38344148|emb|CAE01824.2| OSJNBa0041A02.15 [Oryza sativa Japonica Group]
 gi|113565345|dbj|BAF15688.1| Os04g0602600 [Oryza sativa Japonica Group]
 gi|125549608|gb|EAY95430.1| hypothetical protein OsI_17272 [Oryza sativa Indica Group]
          Length = 804

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 220/635 (34%), Positives = 357/635 (56%), Gaps = 28/635 (4%)

Query: 49  LRSSLVRAYG--------HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLG 100
           LR+SL+  Y          V  VR LFD M +R+   +NT+   Y + G   ++L++F+ 
Sbjct: 144 LRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVR 203

Query: 101 MLRLGEYNPDNYTYPIVIKACT--DLAWRKLGIALHGRVLITGFDM--DTFVGNCLIAMY 156
           ML  G + P   ++  +  A    D +W      L+G ++  G +   D FV +  I M+
Sbjct: 204 MLEDG-FRPTPVSFVNIFPAAVADDPSW---PFQLYGLLVKYGVEYINDLFVVSSAIDMF 259

Query: 157 MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP-DCASV 215
             FG+V++AR+VFD   + +   WNT+I+GY +N    EA+ +F  +L S   P D  + 
Sbjct: 260 SEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTF 319

Query: 216 VSVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           +S L A    +++ +G+ +H  L+ G      +   NALV MY +CG+V  A  +FDR+ 
Sbjct: 320 LSALTAASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLP 379

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
           E+D+VTW +M+  +  N      L L   MQ  G   +S+T+ ++LSA S+   L+ G+ 
Sbjct: 380 EKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQ 439

Query: 335 LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA--RTSKKKTVPWNAILAGCVHN 392
            H + I+  +E E + E+ LIDMYAK   V+++ +VF   + +K+  V WNA++AG   +
Sbjct: 440 AHGYLIRHGIEGEGL-ESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQS 498

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAY-AILADLQQAMNIHCYLIRYGFLSVVEV 451
           G   KA+ +FR ML   +EP   TL S+LPA   +   +     IHC+ +R    + V V
Sbjct: 499 GQPEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFV 558

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
            T LID+YSKCG + +A  +F  +    K  V ++ +I+G G HG G+ A++LF  M + 
Sbjct: 559 GTALIDMYSKCGEITTAENVFGGM--TGKSTVTYTTMISGLGQHGFGKKALALFNSMQEK 616

Query: 512 GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571
           G++P+ VTF SA+ AC++ GL+DEGL L+  M ++    +   H+ C+ DLL +AGR++E
Sbjct: 617 GLKPDAVTFLSAISACNYSGLVDEGLALYRSM-DSFGISATPQHHCCVADLLAKAGRVEE 675

Query: 572 AYDLIRTMPLKPTH-AVWGALLGACVIHGNVELGEVAAKWLFELEPE--NPGNYVLLSKL 628
           AY+ I  +  +    A+WG+LL +C   G  EL ++  K L ++E +  + G  VLLS++
Sbjct: 676 AYEFIEGLGEEGNFVAIWGSLLASCKAQGKQELAKLVTKKLLDIEKQYGHAGYSVLLSQV 735

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            +A   W  A+++R  M  +GL+K    S I+V+N
Sbjct: 736 LAAESNWNSADSLRKEMRARGLKKEAGSSWIKVQN 770



 Score =  218 bits (555), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 161/545 (29%), Positives = 267/545 (48%), Gaps = 23/545 (4%)

Query: 58  GHVSNVRILFDEMSERS--SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNP---DNY 112
           G + + R L  E   R   + L N ++  YA      ++L+++  +L      P   D+Y
Sbjct: 48  GRLDHARRLLLEALPRPPPTLLCNALLIAYAARALPEEALRLY-ALLNHAARPPVRSDHY 106

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDM-DTFV-GNCLIAMYMNF-----GEVKAA 165
           TY   + AC      +LG ++H  +L     + DT V  N L+ +Y +        V   
Sbjct: 107 TYSAALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREARVDVV 166

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           R++FDAM + +VVSWNTL   Y K    +EAL +F  ML+ G  P   S V++ PA    
Sbjct: 167 RRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAAVAD 226

Query: 226 KEIEMGRMIHELVAGG-RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
                 ++   LV  G     ++   ++ +DM+ + G V  AR VFDR ++++   W +M
Sbjct: 227 DPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTM 286

Query: 285 INGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK-Q 342
           I GY  NG    A+ LF +++    V  + +T  S L+A S    +  G+ LH + IK  
Sbjct: 287 ITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIKGM 346

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
           +    VI+  AL+ MY++C  V+ +F +F R  +K  V WN ++   + N    + + L 
Sbjct: 347 HRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLV 406

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
            +M       +  TL ++L A +   DLQ     H YLIR+G +    + + LID+Y+K 
Sbjct: 407 YEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHG-IEGEGLESYLIDMYAKS 465

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G +E A ++F       +D V W+ +IAGY   G  E A+ +F+ M+++G++P  VT  S
Sbjct: 466 GRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLAS 525

Query: 523 ALHACSH-GGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTM 579
            L AC   GG +  G  +  F +   + C   + +  T ++D+  + G +  A ++   M
Sbjct: 526 VLPACDPVGGGVYSGKQIHCFAV---RRCLDTNVFVGTALIDMYSKCGEITTAENVFGGM 582

Query: 580 PLKPT 584
             K T
Sbjct: 583 TGKST 587



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 167/353 (47%), Gaps = 19/353 (5%)

Query: 259 KCGSVNEARLVFDRMSERDVVTW--TSMINGYALNGDVRNALGLFQLMQFEG---VRPNS 313
           K G ++ AR +      R   T    +++  YA       AL L+ L+       VR + 
Sbjct: 46  KQGRLDHARRLLLEALPRPPPTLLCNALLIAYAARALPEEALRLYALLNHAARPPVRSDH 105

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIK--QNLECEVIVETALIDMYAKC-----NLVKL 366
            T  + L+AC+    L+ GRS+HA  ++  ++L    ++  +L+++YA         V +
Sbjct: 106 YTYSAALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLLNLYASSVRYREARVDV 165

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
             ++F    K+  V WN +    V  G  ++A+ELF +ML +   P   +  ++ PA A+
Sbjct: 166 VRRLFDAMPKRNVVSWNTLFGWYVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPA-AV 224

Query: 427 LADLQQAMNIHCYLIRYG--FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
             D      ++  L++YG  +++ + V +  ID++S+ G ++SA ++F     K+ +  V
Sbjct: 225 ADDPSWPFQLYGLLVKYGVEYINDLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTE--V 282

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQP-NEVTFTSALHACSHGGLLDEGLDLFNFM 543
           W+ +I GY  +G    A+ LF +++ S   P + VTF SAL A S    +  G  L  ++
Sbjct: 283 WNTMITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYL 342

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
           ++             +V +  R G +  A+DL   +P K     W  ++ A +
Sbjct: 343 IKGMHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDI-VTWNTMVTAFI 394


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 221/674 (32%), Positives = 351/674 (52%), Gaps = 16/674 (2%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITS--GPLFTHLRSSLVRAY---G 58
           P +  LP  +    KLVQ    T S+   K  H  +I +   P    L ++L+  Y   G
Sbjct: 10  PYYLGLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCL-FLLNNLLYMYCKCG 68

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
                + LFD M +R+   +N+++  Y Q G  H+ + +F    R+ +   D +T+   +
Sbjct: 69  ETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLF-KEARMSDLRLDKFTFSNAL 127

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
             C      +LG  +H  + ++G      + N LI MY   G +  AR VF++  E   V
Sbjct: 128 SVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSV 187

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG--YLKEIEMGRMIHE 236
           SWN+LI+GY +     E L +   ML+ G+  +  ++ S L ACG  +   IE G+M+H 
Sbjct: 188 SWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHG 247

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY----ALNG 292
                 L  ++    AL+D Y K G + +A  +F  M + +VV + +MI G+     +  
Sbjct: 248 CAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMAD 307

Query: 293 DVRN-ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           +  N A+ LF  MQ  G++P+  T  S+L ACS++   + G+ +HA   K NL+ +  + 
Sbjct: 308 EFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIG 367

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
            AL+++Y+    ++   + F  T K   V W +++ G V NG     + LF ++L    +
Sbjct: 368 NALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRK 427

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           P++ T++ +L A A LA ++    IH Y I+ G  +   +    I +Y+KCG ++SA+  
Sbjct: 428 PDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMT 487

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F E   K+ DIV WSV+I+    HG  + AV LF+ M  SG+ PN +TF   L ACSHGG
Sbjct: 488 FKET--KNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGG 545

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
           L++EGL  F  M ++H       H  CIVDLLGRAGRL EA   I     +    +W +L
Sbjct: 546 LVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSL 605

Query: 592 LGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651
           L AC +H   + G+  A+ + ELEPE   +YVLL  +Y+       A  +R++M ++G++
Sbjct: 606 LSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVK 665

Query: 652 KAPAHSLIEVRNIL 665
           K P  S IEV N++
Sbjct: 666 KEPGLSWIEVGNVV 679



 Score = 38.9 bits (89), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 115/265 (43%), Gaps = 35/265 (13%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILF 67
           T  +++      AA KS    +Q+HA+ I +G   FT +++S +  Y   G + +  + F
Sbjct: 432 TISIMLSACANLAAVKS---GEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTF 488

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
            E        ++ ++   AQ+G + +++ +F  +++     P++ T+  V+ AC+     
Sbjct: 489 KETKNPDIVSWSVMISSNAQHGCAKEAVDLF-ELMKGSGIAPNHITFLGVLVACSHGGLV 547

Query: 128 KLGIALHGRVLITGFDMDTFVGN--CLIAMYMNFGEVKAARK-VFDAMWEHSVVSWNTLI 184
           + G+  +  ++     +   V +  C++ +    G +  A   + D+ +E   V W +L+
Sbjct: 548 EEGLR-YFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLL 606

Query: 185 SG------------------YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           S                     +   A   +++++    +G++     + +++   G  K
Sbjct: 607 SACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKK 666

Query: 227 E-----IEMGRMIHELVAGGRLGKN 246
           E     IE+G ++H  VAG R   N
Sbjct: 667 EPGLSWIEVGNVVHSFVAGDRSHPN 691


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/590 (32%), Positives = 330/590 (55%), Gaps = 8/590 (1%)

Query: 77  LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGR 136
           ++N  +  Y Q G   +++  F  M++      D+ TY +++     L   +LG  +HG 
Sbjct: 264 VWNKTLSSYLQAGEGWEAVDCFRDMIK-SRVPCDSLTYIVILSVVASLNHLELGKQIHGA 322

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEA 196
           V+  G+D    V N  I MY+  G V  AR++F  M E  ++SWNT+ISG  ++   + +
Sbjct: 323 VVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECS 382

Query: 197 LVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE-MGRMIHE--LVAGGRLGKNIAAWNAL 253
           L +F  +L+SG+ PD  ++ SVL AC  L+E   +GR +H   L AG  L   ++   AL
Sbjct: 383 LRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVS--TAL 440

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           +D+Y K G + EA L+F      D+ +W +M++G+ ++ + R AL LF LM   G + + 
Sbjct: 441 IDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQ 500

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
           +T  +   A   L  L++G+ +HA  IK     ++ V + ++DMY KC  +K + +VF +
Sbjct: 501 ITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQ 560

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
                 V W  +++GCV NG   +A+  + QM +  V+P++ T  +L+ A ++L  L+Q 
Sbjct: 561 IPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQG 620

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             IH  +++        V T L+D+Y+KCG++E A+ +F  +    + + +W+ +I G  
Sbjct: 621 KQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRM--NTRSVALWNAMIVGLA 678

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
            HG+ E A++ F EM   GV P+ VTF   L ACSH GL  +    F+ M + +      
Sbjct: 679 QHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEI 738

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
           +HY+C+VD L RAG + EA  ++ +MP + +  ++  LL AC + G+ E GE  A+ LF 
Sbjct: 739 EHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFT 798

Query: 614 LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           ++P +   YVLLS +Y+A  +W++A + R++M    ++K P  S I+++N
Sbjct: 799 MDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKN 848



 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 171/553 (30%), Positives = 273/553 (49%), Gaps = 45/553 (8%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +  +   R+LFD M  R   L+N +MK Y + GA  + L +F    R G   PD      
Sbjct: 170 FQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSG-LRPD------ 222

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA-ARKVFDAMWEH 175
               C  +           R ++ G    T     L        +V+A A K+F    + 
Sbjct: 223 ----CVSV-----------RTILMGVGKKTVFEREL-------EQVRAYATKLFVCDDDS 260

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
            V  WN  +S Y +     EA+  F  M+KS V  D  + + +L     L  +E+G+ IH
Sbjct: 261 DVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIH 320

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
             V      + ++  N+ ++MYVK GSVN AR +F +M E D+++W ++I+G A +G   
Sbjct: 321 GAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEE 380

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSL---YYLKRGRSLHAWTIKQNLECEVIVET 352
            +L LF  +   G+ P+  TI S+L ACSSL   Y +  GR +H   +K  +  +  V T
Sbjct: 381 CSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCV--GRQVHTCALKAGIVLDSFVST 438

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           ALID+Y+K   ++ +  +F          WNA++ G   +   R+A+ LF  M     + 
Sbjct: 439 ALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKA 498

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           +  T  +   A   L  LQQ   IH  +I+  F   + V +G++D+Y KCG ++SA K+F
Sbjct: 499 DQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVF 558

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
           ++IP  D   V W+ +I+G   +G  E A+  + +M  +GVQP+E TF + + ACS    
Sbjct: 559 NQIPSPDD--VAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTA 616

Query: 533 LDEGLDLF-NFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
           L++G  +  N M  N   C+  D +  T +VD+  + G +++AY L R M  +   A+W 
Sbjct: 617 LEQGKQIHANIMKLN---CA-FDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSV-ALWN 671

Query: 590 ALLGACVIHGNVE 602
           A++     HGN E
Sbjct: 672 AMIVGLAQHGNAE 684



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 140/476 (29%), Positives = 246/476 (51%), Gaps = 12/476 (2%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           KQ+H  ++  G   F  + +S +  Y   G V+  R +F +M E     +NTV+   A++
Sbjct: 317 KQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARS 376

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK-LGIALHGRVLITGFDMDTF 147
           G    SL++F+ +LR G   PD +T   V++AC+ L     +G  +H   L  G  +D+F
Sbjct: 377 GLEECSLRLFIDLLRSGLL-PDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSF 435

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           V   LI +Y   G+++ A  +F       + SWN ++ G+  +   +EAL +F  M + G
Sbjct: 436 VSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERG 495

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
            + D  +  +   A G L  ++ G+ IH +V   R   ++   + ++DMY+KCG +  AR
Sbjct: 496 EKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSAR 555

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VF+++   D V WT++I+G   NG+   AL  +  M+  GV+P+  T  +L+ ACS L 
Sbjct: 556 KVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLT 615

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L++G+ +HA  +K N   +  V T+L+DMYAKC  ++ ++ +F R + +    WNA++ 
Sbjct: 616 ALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIV 675

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA---ILADLQQAMNIHCYLIRYG 444
           G   +G A +A+  F +M    V P+  T   +L A +   + +D  +  N       YG
Sbjct: 676 GLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYK--NFDSMQKTYG 733

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
               +E  + L+D  S+ G ++ A K+ S +P  +    ++  ++    + G  ET
Sbjct: 734 VEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPF-EASATMYRTLLNACRVQGDKET 788



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 116/464 (25%), Positives = 203/464 (43%), Gaps = 61/464 (13%)

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD--AMWEHSVVSWNTLISG 186
           LG   H  ++ +G + D +V N LI MY   G + +ARK+FD     +  +V++N +++ 
Sbjct: 31  LGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAA 90

Query: 187 YFKNA------YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
           Y             EA  +F  + +S +     ++  +   C           +      
Sbjct: 91  YAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVK 150

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
             L  ++    ALV++Y K   + EAR++FDRM  RDVV W  M+  Y   G     LGL
Sbjct: 151 IGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGL 210

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
           F      G+RP+ +++ ++L         +R                   E   +  YA 
Sbjct: 211 FSAFHRSGLRPDCVSVRTILMGVGKKTVFER-------------------ELEQVRAYAT 251

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
                   ++F          WN  L+  +  G   +AV+ FR M+   V  +  T   +
Sbjct: 252 --------KLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVI 303

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L   A L  L+    IH  ++R+G+   V V+   I++Y K GS+  A ++F +  +K+ 
Sbjct: 304 LSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQ--MKEV 361

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS------------ 528
           D++ W+ +I+G    G  E ++ LF ++++SG+ P++ T TS L ACS            
Sbjct: 362 DLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQV 421

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572
           H   L  G+ L +F+             T ++D+  + G+++EA
Sbjct: 422 HTCALKAGIVLDSFV------------STALIDVYSKGGKMEEA 453



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 19/197 (9%)

Query: 418 NSLLPA-YAIL------ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           +SLLP  ++IL      +DL      H  ++  G      V+  LI +Y+KCGSL SA K
Sbjct: 10  SSLLPQWFSILRHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARK 69

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGH------GETAVSLFKEMVQSGVQPNEVTFTSAL 524
           +F   P  D+D+V ++ I+A Y   G          A  +F+ + QS +     T +   
Sbjct: 70  LFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLF 129

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYT--CIVDLLGRAGRLDEAYDLIRTMPLK 582
             C   G       L  + +   +   + D +    +V++  +  R+ EA  L   MP++
Sbjct: 130 KLCLLYGSPSASEALQGYAV---KIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVR 186

Query: 583 PTHAVWGALLGACVIHG 599
               +W  ++ A V  G
Sbjct: 187 DV-VLWNVMMKAYVEMG 202


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 201/525 (38%), Positives = 304/525 (57%), Gaps = 2/525 (0%)

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           G   D ++ N ++    +F +    R +F  + + ++  WNT+I G   N    +A+  +
Sbjct: 41  GLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFY 100

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
             M   G  P+  +   VL AC  L ++++G  IH LV  G    ++    +LV +Y KC
Sbjct: 101 GLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKC 160

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           G + +A  VFD + +++VV+WT++I+GY   G  R A+ +F+ +    + P+S TI  +L
Sbjct: 161 GYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVL 220

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           SAC+ L  L  G  +H   ++  +   V V T+L+DMYAKC  ++ +  VF    +K  V
Sbjct: 221 SACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIV 280

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            W A++ G   NGL ++A++LF QM  E V+P+  T+  +L A A L  L+    +   +
Sbjct: 281 SWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLV 340

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
            R  FL    + T LID+Y+KCGS+  A ++F    +K+KD VVW+ II+G  M+G+ + 
Sbjct: 341 DRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFK--GMKEKDRVVWNAIISGLAMNGYVKI 398

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560
           +  LF ++ + G++P+  TF   L  C+H GL+DEG   FN M          +HY C+V
Sbjct: 399 SFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMV 458

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620
           DLLGRAG LDEA+ LIR MP++    VWGALLGAC IH + +L E+A K L ELEP N G
Sbjct: 459 DLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSG 518

Query: 621 NYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           NYVLLS +YSA  +W +A  VR  M+EK ++K P  S IEV  I+
Sbjct: 519 NYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIV 563



 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 146/455 (32%), Positives = 253/455 (55%), Gaps = 3/455 (0%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +   +  R LF ++ + + FL+NT+++    N    D+++ F G++R   + P+N+T+P 
Sbjct: 59  FSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIE-FYGLMRSEGFLPNNFTFPF 117

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           V+KAC  L   +LG+ +H  V+  GFD D FV   L+ +Y   G ++ A KVFD + + +
Sbjct: 118 VLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKN 177

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           VVSW  +ISGY      +EA+ +F  +L+  + PD  ++V VL AC  L ++  G  IH+
Sbjct: 178 VVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHK 237

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            +    + +N+    +LVDMY KCG++ +AR VFD M E+D+V+W +MI GYALNG  + 
Sbjct: 238 CIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKE 297

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A+ LF  MQ E V+P+  T+  +LSAC+ L  L+ G  +     +       ++ TALID
Sbjct: 298 AIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALID 357

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           +YAKC  +  +++VF    +K  V WNAI++G   NG  + +  LF Q+    ++P+  T
Sbjct: 358 LYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNT 417

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLS-VVEVSTGLIDIYSKCGSLESAHKIFSEI 475
              LL        + +       + R+  L+  +E    ++D+  + G L+ AH++   +
Sbjct: 418 FIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNM 477

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           P+ + + +VW  ++    +H   + A    K++++
Sbjct: 478 PM-EANAIVWGALLGACRIHRDTQLAELALKQLIE 511


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 237/706 (33%), Positives = 370/706 (52%), Gaps = 60/706 (8%)

Query: 8   TLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY---GHVS 61
           TL  ++     L+ +Y  +      ++LH   I  G    LF  L ++L+  Y   G + 
Sbjct: 94  TLFSSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLF--LSNTLINIYVRIGDLG 151

Query: 62  NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC 121
           + + LFDEMS R+   +  ++  Y QNG   ++   F  M+R G + P++Y +   ++AC
Sbjct: 152 SAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAG-FIPNHYAFGSALRAC 210

Query: 122 TDLAWR--KLGIALHGRVLITGFDMDTFVGNCLIAMYMN-FGEVKAARKVFDAMWEHSVV 178
            +      KLG+ +HG +  T +  D  V N LI+MY +       AR VFD +   + +
Sbjct: 211 QESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSI 270

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGV----EP-DCASVVSVLPACGYLKEIEMGRM 233
           SWN++IS Y +   A  A  +F  M K G+    +P D  S  SVL   G  K    GR 
Sbjct: 271 SWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEE-GRRK----GRE 325

Query: 234 IHELVAGGRLGKN-IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
           +H  V    L  N +A  N LV+MY K G++ +A  VF+ M E+D V+W S+I+G   N 
Sbjct: 326 VHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNE 385

Query: 293 DVRNALGLFQLM-QFEGVRPNS-------------------------------LTIGSLL 320
              +A  +F LM +++ V  NS                               +T  ++L
Sbjct: 386 CSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINIL 445

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK-KKT 379
           SA SSL   +    +HA  +K  L  +  +  AL+  Y KC  +    ++FAR S+ +  
Sbjct: 446 SAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDE 505

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           V WN++++G +HN L  KA++L   M+ +    +  T  ++L A A +A L++ M +H  
Sbjct: 506 VSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHAC 565

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            IR    S V V + L+D+YSKCG ++ A + F  +P+  +++  W+ +I+GY  HGHGE
Sbjct: 566 GIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPL--RNVYSWNSMISGYARHGHGE 623

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
            A+ LF  M+  G  P+ VTF   L ACSH G ++EG + F  M E ++   R +H++C+
Sbjct: 624 KALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCM 683

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG--NVELGEVAAKWLFELEPE 617
           VDLLGRAG+LDE  D I +MP+KP   +W  +LGAC      N ELG  AA+ L ELEP+
Sbjct: 684 VDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQ 743

Query: 618 NPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           N  NYVLL+ +Y++  +W+D    R  M E  ++K    S + +++
Sbjct: 744 NAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKD 789


>gi|115467784|ref|NP_001057491.1| Os06g0314100 [Oryza sativa Japonica Group]
 gi|54291635|dbj|BAD62428.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113595531|dbj|BAF19405.1| Os06g0314100 [Oryza sativa Japonica Group]
 gi|125597005|gb|EAZ36785.1| hypothetical protein OsJ_21122 [Oryza sativa Japonica Group]
          Length = 992

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 205/615 (33%), Positives = 341/615 (55%), Gaps = 15/615 (2%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR---L 104
           S+LV  Y   G + +   LF  ++E+S  L+N+++  Y  N    +   M +G +R   +
Sbjct: 383 SALVSMYSKLGDLDSAVFLFSSVTEKSQLLWNSLISGYLVN----NKWNMVMGSVRRMQI 438

Query: 105 GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA 164
              +PD  T   VI  C       +G ++H   + +  +++  V N L+AMY + G++  
Sbjct: 439 EGVDPDALTVISVISKCRHTEDLHVGKSIHAYAVRSRLELNESVMNALLAMYADCGQLSI 498

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
             K+F  M   +++SWNT+ISG+ +N  +   L  F  M  + ++ D  ++++++ +   
Sbjct: 499 CCKLFHTMEVRTLISWNTIISGFAENGDSVACLRFFCQMRLADMQFDLVTLIALISSLSA 558

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           +++I +G  +H L        +++  NAL+ MY  CG +     +FD +S  + +++ ++
Sbjct: 559 IEDITVGESVHSLAIRSGCNLDVSVANALITMYTNCGIIQAGEKLFDSLSSVNTISYNAL 618

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           + GY  N      L LF  M     +PN +T+ +LL  C S     +G+++H++ I+   
Sbjct: 619 MTGYRKNNLFEEILPLFYHMIKNDQKPNIITLLNLLPICHSQL---QGKTVHSYAIRNFS 675

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
           + E  + T+ I MY++ N ++    +F    ++  + WNAIL+ CV    A  A + FRQ
Sbjct: 676 KLETSLFTSAICMYSRFNNLEYCHNLFCLVGERNNIVWNAILSACVQCKQAGVAFDYFRQ 735

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           +    V+ +  T+ +L+ A + L     A  +    ++ GF   + V   LID++S+CGS
Sbjct: 736 IQFLNVKTDAVTMLALISACSQLGKADLAECVTAIALQKGFDGTIIVLNALIDMHSRCGS 795

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           +  A KIF +I + +KD V WS +I  Y MHG G +A+ LF  MV SG++P+++TF S L
Sbjct: 796 ISFARKIF-DISM-EKDSVSWSTMINAYSMHGDGGSALDLFLMMVSSGIKPDDITFVSVL 853

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            ACS  G L++G  LF  ML +H    R +HY C+VDLLGR G LDEAYD++ TMP +P+
Sbjct: 854 SACSRSGFLEQGRTLFRSMLADHGITPRMEHYACMVDLLGRTGHLDEAYDIVTTMPFRPS 913

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
            ++  +LLGAC  HGN +LGE   K L E +  NP +YV+LS +Y++  +W D E +R  
Sbjct: 914 KSLLESLLGACRFHGNSKLGESVGKILTESDHGNPRSYVMLSNIYASAGKWSDYERLRSD 973

Query: 645 MDEKGLRKAPAHSLI 659
           M+ KGL K    SLI
Sbjct: 974 MEAKGLIKDVGVSLI 988



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 155/598 (25%), Positives = 292/598 (48%), Gaps = 19/598 (3%)

Query: 3   GPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---G 58
           G  + T P        +++  AA   +   K++H  ++ +G      ++++L+  Y   G
Sbjct: 139 GSDNFTFPP-------VIRACAAVSCLRLGKEVHCRVVRTGHGGNVGVQTALLDMYAKSG 191

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
            V   R +FD M  R    +N ++  Y+ NG   ++ +    M + G + P+  +   ++
Sbjct: 192 QVDLSRRVFDGMKSRDLISWNAMISGYSLNGCLLEAAEALKQMQQDG-FRPNASSLVGIV 250

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
              + L  R  G  LH   L +G   D  +    I+MY  FG + ++  +F      ++V
Sbjct: 251 SMVSGLGVRDAGDPLHAFALKSGVLGDESLTPAFISMYAAFGHLSSSLSLFHQSLVDNLV 310

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           S N++IS   ++   ++A  VF  M   G+ P+  +VVS+LP C     I  G  +H +V
Sbjct: 311 SCNSMISVCMQHGAWEKAFGVFRLMRCKGLVPNLVTVVSILPCCSNFFGINHGESVHGMV 370

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               L + ++  +ALV MY K G ++ A  +F  ++E+  + W S+I+GY +N      +
Sbjct: 371 IKFGLAEQVSVVSALVSMYSKLGDLDSAVFLFSSVTEKSQLLWNSLISGYLVNNKWNMVM 430

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
           G  + MQ EGV P++LT+ S++S C     L  G+S+HA+ ++  LE    V  AL+ MY
Sbjct: 431 GSVRRMQIEGVDPDALTVISVISKCRHTEDLHVGKSIHAYAVRSRLELNESVMNALLAMY 490

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
           A C  + +  ++F     +  + WN I++G   NG +   +  F QM +  ++ +  TL 
Sbjct: 491 ADCGQLSICCKLFHTMEVRTLISWNTIISGFAENGDSVACLRFFCQMRLADMQFDLVTLI 550

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           +L+ + + + D+    ++H   IR G    V V+  LI +Y+ CG +++  K+F    + 
Sbjct: 551 ALISSLSAIEDITVGESVHSLAIRSGCNLDVSVANALITMYTNCGIIQAGEKLFDS--LS 608

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
             + + ++ ++ GY  +   E  + LF  M+++  +PN +T  + L  C H  L  +G  
Sbjct: 609 SVNTISYNALMTGYRKNNLFEEILPLFYHMIKNDQKPNIITLLNLLPIC-HSQL--QGKT 665

Query: 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
           + ++ + N         +T  + +  R   L+  ++L   +  +  + VW A+L ACV
Sbjct: 666 VHSYAIRNFSKL-ETSLFTSAICMYSRFNNLEYCHNLF-CLVGERNNIVWNAILSACV 721



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 145/529 (27%), Positives = 256/529 (48%), Gaps = 19/529 (3%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFD 68
           +P     V +L++   AT+S     +LHA +  +G L    R       G V        
Sbjct: 39  IPPRVDAVSRLLR---ATRSAKCLSKLHARLAVTGAL----REDASVVAGAVERYLFFGK 91

Query: 69  EMSERSSF--LYNTVMKMYAQNGA-----SHDSLKMFLGMLR-LGEYNPDNYTYPIVIKA 120
             S  + F   Y    ++Y  N A      H   +  LG+ R +  +  DN+T+P VI+A
Sbjct: 92  PASAAAVFAGFYRGRAEVYDLNIAVRCFSDHGFHRELLGLYREVCAFGSDNFTFPPVIRA 151

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
           C  ++  +LG  +H RV+ TG   +  V   L+ MY   G+V  +R+VFD M    ++SW
Sbjct: 152 CAAVSCLRLGKEVHCRVVRTGHGGNVGVQTALLDMYAKSGQVDLSRRVFDGMKSRDLISW 211

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-VA 239
           N +ISGY  N    EA      M + G  P+ +S+V ++     L   + G  +H   + 
Sbjct: 212 NAMISGYSLNGCLLEAAEALKQMQQDGFRPNASSLVGIVSMVSGLGVRDAGDPLHAFALK 271

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
            G LG   +   A + MY   G ++ +  +F +    ++V+  SMI+    +G    A G
Sbjct: 272 SGVLGDE-SLTPAFISMYAAFGHLSSSLSLFHQSLVDNLVSCNSMISVCMQHGAWEKAFG 330

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           +F+LM+ +G+ PN +T+ S+L  CS+ + +  G S+H   IK  L  +V V +AL+ MY+
Sbjct: 331 VFRLMRCKGLVPNLVTVVSILPCCSNFFGINHGESVHGMVIKFGLAEQVSVVSALVSMYS 390

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           K   +  +  +F+  ++K  + WN++++G + N      +   R+M +E V+P+  T+ S
Sbjct: 391 KLGDLDSAVFLFSSVTEKSQLLWNSLISGYLVNNKWNMVMGSVRRMQIEGVDPDALTVIS 450

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           ++       DL    +IH Y +R        V   L+ +Y+ CG L    K+F  + +  
Sbjct: 451 VISKCRHTEDLHVGKSIHAYAVRSRLELNESVMNALLAMYADCGQLSICCKLFHTMEV-- 508

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
           + ++ W+ II+G+  +G     +  F +M  + +Q + VT  + + + S
Sbjct: 509 RTLISWNTIISGFAENGDSVACLRFFCQMRLADMQFDLVTLIALISSLS 557


>gi|449519412|ref|XP_004166729.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Cucumis sativus]
          Length = 781

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 211/640 (32%), Positives = 347/640 (54%), Gaps = 21/640 (3%)

Query: 33  KQLHAFIITSGPLFTHL--RSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           +Q+H F+I+SG   +H+   +SL+  Y   G +     +F  + +     +NT++  + +
Sbjct: 93  RQIHGFVISSG-FVSHITVSNSLMNMYCKSGQLERAFSVFQNLHDPDIVSWNTILSGFEK 151

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
              S ++L   L M  L     D+ TY   +  C D      G  LH   L  GF  D F
Sbjct: 152 ---SENALSFALRM-NLNGVKFDSVTYTTALSFCLDGEEFLFGWQLHTLALKCGFKGDVF 207

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA-YAKEALVVFDWMLKS 206
           VGN L+ MY  +  +  ARKVFD M     VSW+ +I+GY +      +A++VF  M++ 
Sbjct: 208 VGNALVTMYSRWEHLVDARKVFDEMPSRDRVSWSAMITGYAQEGDNGLQAILVFVQMVRE 267

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           GV+ D   +   L  CG+ + +E+G+ IH L        + +  N L+  Y KC  + +A
Sbjct: 268 GVKFDNVPITGALSVCGHERNLELGKQIHCLAVKTGHETHTSVGNVLISTYSKCEIIEDA 327

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
           + VF+ +++R+V++WT+MI+ Y        A+ LF  M+ +GV PN +T   LL A +  
Sbjct: 328 KAVFELINDRNVISWTTMISLYE-----EGAVSLFNKMRLDGVYPNDVTFIGLLHAITIR 382

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             +++G  +H   IK +   E+ V  +LI MYAK   ++ + +VF     ++ + WNA++
Sbjct: 383 NMVEQGLMVHGLCIKADFVSELTVGNSLITMYAKFEFMQDASRVFIELPYREIISWNALI 442

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD--LQQAMNIHCYLIRYG 444
           +G   N L ++A+E F   ++E  +PN+ T  S+L A +   D  L+     H +LI+ G
Sbjct: 443 SGYAQNALCQEALEAFLYAIMEY-KPNEYTFGSVLNAISAGEDISLKHGQRCHSHLIKVG 501

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
                 +S  L+D+Y+K GS++ + ++F+E   + +    W+ +I+GY  HG  E+ + L
Sbjct: 502 LNVDPIISGALLDMYAKRGSIQESQRVFNETSKQSQ--FAWTALISGYAQHGDYESVIKL 559

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           F+EM +  ++P+ V F S L ACS   ++D G   FN M+++H      +HY+C+VD+LG
Sbjct: 560 FEEMEKERIKPDAVIFLSVLTACSRNRMVDMGRQFFNMMIKDHMIEPEGEHYSCMVDMLG 619

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
           RAGRL+EA +++  +P  P  +   +LLGAC  HGNVE+ E  A  L + EP   G YVL
Sbjct: 620 RAGRLEEAEEILARIPGGPGVSALQSLLGACRTHGNVEMAERIANDLMKKEPLESGPYVL 679

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
           +S LY+    W+    VR  M E+G+ K    S ++V N 
Sbjct: 680 MSNLYAQKGDWEKVAKVRKEMRERGVMKEIGFSWVDVGNF 719



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 172/596 (28%), Positives = 282/596 (47%), Gaps = 43/596 (7%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG-EYNPD 110
           +  R++ H  N   LFD+    ++  +N V+  Y     +  SL+ F    R G + N D
Sbjct: 18  NFFRSFQHDHN---LFDQSPPPNAASFNRVLLNYLPRDGAFQSLRFFKNNFRWGLDGNAD 74

Query: 111 NYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD 170
            +T  + +KAC    + KLG  +HG V+ +GF     V N L+ MY   G+++ A  VF 
Sbjct: 75  EFTLVLALKACC--GFPKLGRQIHGFVISSGFVSHITVSNSLMNMYCKSGQLERAFSVFQ 132

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
            + +  +VSWNT++SG+ K   ++ AL     M  +GV+ D  +  + L  C   +E   
Sbjct: 133 NLHDPDIVSWNTILSGFEK---SENALSFALRMNLNGVKFDSVTYTTALSFCLDGEEFLF 189

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
           G  +H L        ++   NALV MY +   + +AR VFD M  RD V+W++MI GYA 
Sbjct: 190 GWQLHTLALKCGFKGDVFVGNALVTMYSRWEHLVDARKVFDEMPSRDRVSWSAMITGYAQ 249

Query: 291 NGDVR-NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            GD    A+ +F  M  EGV+ +++ I   LS C     L+ G+ +H   +K   E    
Sbjct: 250 EGDNGLQAILVFVQMVREGVKFDNVPITGALSVCGHERNLELGKQIHCLAVKTGHETHTS 309

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           V   LI  Y+KC +++ +  VF   + +  + W  +++          AV LF +M ++ 
Sbjct: 310 VGNVLISTYSKCEIIEDAKAVFELINDRNVISWTTMIS-----LYEEGAVSLFNKMRLDG 364

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           V PND T   LL A  I   ++Q + +H   I+  F+S + V   LI +Y+K   ++ A 
Sbjct: 365 VYPNDVTFIGLLHAITIRNMVEQGLMVHGLCIKADFVSELTVGNSLITMYAKFEFMQDAS 424

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
           ++F E+P   ++I+ W+ +I+GY  +   + A+  F   +    +PNE TF S L+A S 
Sbjct: 425 RVFIELPY--REIISWNALISGYAQNALCQEALEAFLYAIME-YKPNEYTFGSVLNAISA 481

Query: 530 GGLLDEGLDLFNFMLENHQTCS--------RADHYT--CIVDLLGRAGRLDEAYDLIRTM 579
           G          +  L++ Q C           D      ++D+  + G + E+  +    
Sbjct: 482 GE---------DISLKHGQRCHSHLIKVGLNVDPIISGALLDMYAKRGSIQESQRVFNET 532

Query: 580 PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE--NPGNYVLLSKLYSAVR 633
             K +   W AL+     HG+    E   K   E+E E   P   + LS L +  R
Sbjct: 533 S-KQSQFAWTALISGYAQHGDY---ESVIKLFEEMEKERIKPDAVIFLSVLTACSR 584


>gi|125555089|gb|EAZ00695.1| hypothetical protein OsI_22717 [Oryza sativa Indica Group]
          Length = 992

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 204/615 (33%), Positives = 342/615 (55%), Gaps = 15/615 (2%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR---L 104
           S+LV  Y   G + +   LF  ++E+S  L+N+++  Y  N    +   M +G +R   +
Sbjct: 383 SALVSMYSKLGDLDSAVFLFSSVTEKSQLLWNSLISGYLVN----NKWNMVMGSVRRMQI 438

Query: 105 GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA 164
              +PD  T   VI  C       +G ++H   + +  +++  V N L+AMY + G++  
Sbjct: 439 EGVDPDALTVISVISKCRHTEDLHVGKSIHAYAVRSRLELNESVMNALLAMYADCGQLSI 498

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
             K+F  M   +++SWNT+ISG+ +N  +   L  F  M  + ++ D  ++++++ +   
Sbjct: 499 CCKLFHTMEVRTLISWNTIISGFAENGDSVACLRFFCQMRLADMQFDLVTLIALISSLSA 558

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           +++I +G  +H L        +++  NAL+ MY  CG +     +FD +S  + +++ ++
Sbjct: 559 IEDITVGESVHSLAIRSGCNLDVSVANALITMYTNCGIIQAGEKLFDSLSSVNTISYNAL 618

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           + GY  N   +  L LF  M     +PN +T+ +LL  C S     +G+++H++ I+   
Sbjct: 619 MTGYRKNNLFKEILPLFYHMIKNDQKPNIITLLNLLPICHSQL---QGKTVHSYAIRNFS 675

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
           + E  + T+ I MY++ N ++    +F    ++  + WNAIL+ CV    A  A + FRQ
Sbjct: 676 KLETSLFTSAICMYSRFNNLEYCHNLFCLVGERNNIVWNAILSACVQCKQAGVAFDYFRQ 735

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           +    V+ +  T+ +L+ A + L     A  +    ++ GF   + V   LID++S+CGS
Sbjct: 736 IQFLNVKTDAVTMLALISACSQLGKADLAECVTAIALQKGFDGTIVVLNALIDMHSRCGS 795

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           +  A KIF +I + +KD V WS +I  Y MHG G +A+ LF  MV +G++P+++TF S L
Sbjct: 796 ISFARKIF-DISM-EKDSVSWSTMINAYSMHGDGGSALDLFLMMVSTGIKPDDITFVSVL 853

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            ACS  G L++G  LF  ML +H    R +HY C+VDLLGR G LDEAYD++ TMP +P+
Sbjct: 854 SACSRSGFLEQGRTLFRSMLADHGITPRMEHYACMVDLLGRTGHLDEAYDIVTTMPFRPS 913

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
            ++  +LLGAC  HGN +LGE   K L E +  NP +YV+LS +Y++  +W D E +R  
Sbjct: 914 KSLLESLLGACRFHGNSKLGESVGKILTESDHGNPRSYVMLSNIYASAGKWSDYERLRSD 973

Query: 645 MDEKGLRKAPAHSLI 659
           M+ KGL K    SLI
Sbjct: 974 MEAKGLIKDVGVSLI 988



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 155/598 (25%), Positives = 292/598 (48%), Gaps = 19/598 (3%)

Query: 3   GPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---G 58
           G  + T P        +++  AA   +   K++H  ++ +G      ++++L+  Y   G
Sbjct: 139 GSDNFTFPP-------VIRACAAVSCLRLGKEVHCRVVRTGHGGNVGVQTALLDMYAKSG 191

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
            V   R +FD M  R    +N ++  Y+ NG   ++ +    M + G + P+  +   ++
Sbjct: 192 QVDLSRRVFDGMKSRDLISWNAMISGYSLNGCLLEAAEALKQMQQDG-FRPNASSLVGIV 250

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
              + L  R  G  LH   L +G   D  V    I+MY  FG + ++  +F      ++V
Sbjct: 251 SMVSGLGVRDAGDPLHAFALKSGVLGDESVTPAFISMYAAFGHLSSSLSLFHQSLVDNLV 310

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           S N++IS   ++   ++A  VF  M   G+ P+  +VVS+LP C     I  G  +H +V
Sbjct: 311 SCNSMISVCMQHGAWEKAFGVFRLMRCKGLVPNLVTVVSILPCCSNFFGINHGESVHGMV 370

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               L + ++  +ALV MY K G ++ A  +F  ++E+  + W S+I+GY +N      +
Sbjct: 371 IKFGLAEQVSVVSALVSMYSKLGDLDSAVFLFSSVTEKSQLLWNSLISGYLVNNKWNMVM 430

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
           G  + MQ EGV P++LT+ S++S C     L  G+S+HA+ ++  LE    V  AL+ MY
Sbjct: 431 GSVRRMQIEGVDPDALTVISVISKCRHTEDLHVGKSIHAYAVRSRLELNESVMNALLAMY 490

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
           A C  + +  ++F     +  + WN I++G   NG +   +  F QM +  ++ +  TL 
Sbjct: 491 ADCGQLSICCKLFHTMEVRTLISWNTIISGFAENGDSVACLRFFCQMRLADMQFDLVTLI 550

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           +L+ + + + D+    ++H   IR G    V V+  LI +Y+ CG +++  K+F    + 
Sbjct: 551 ALISSLSAIEDITVGESVHSLAIRSGCNLDVSVANALITMYTNCGIIQAGEKLFDS--LS 608

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
             + + ++ ++ GY  +   +  + LF  M+++  +PN +T  + L  C H  L  +G  
Sbjct: 609 SVNTISYNALMTGYRKNNLFKEILPLFYHMIKNDQKPNIITLLNLLPIC-HSQL--QGKT 665

Query: 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
           + ++ + N         +T  + +  R   L+  ++L   +  +  + VW A+L ACV
Sbjct: 666 VHSYAIRNFSKL-ETSLFTSAICMYSRFNNLEYCHNLF-CLVGERNNIVWNAILSACV 721



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 145/529 (27%), Positives = 256/529 (48%), Gaps = 19/529 (3%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFD 68
           +P     V +L++   AT+S     +LHA +  +G L    R       G V        
Sbjct: 39  IPPRVDAVSRLLR---ATRSAKCLSKLHARLAVTGAL----REDASVVAGAVERYLFFGK 91

Query: 69  EMSERSSF--LYNTVMKMYAQNGA-----SHDSLKMFLGMLR-LGEYNPDNYTYPIVIKA 120
             S  + F   Y    ++Y  N A      H   +  LG+ R +  +  DN+T+P VI+A
Sbjct: 92  PASAAAVFAGFYRGRAEVYDLNIAVRCFSDHGFHRELLGLYREVCAFGSDNFTFPPVIRA 151

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
           C  ++  +LG  +H RV+ TG   +  V   L+ MY   G+V  +R+VFD M    ++SW
Sbjct: 152 CAAVSCLRLGKEVHCRVVRTGHGGNVGVQTALLDMYAKSGQVDLSRRVFDGMKSRDLISW 211

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-VA 239
           N +ISGY  N    EA      M + G  P+ +S+V ++     L   + G  +H   + 
Sbjct: 212 NAMISGYSLNGCLLEAAEALKQMQQDGFRPNASSLVGIVSMVSGLGVRDAGDPLHAFALK 271

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
            G LG   +   A + MY   G ++ +  +F +    ++V+  SMI+    +G    A G
Sbjct: 272 SGVLGDE-SVTPAFISMYAAFGHLSSSLSLFHQSLVDNLVSCNSMISVCMQHGAWEKAFG 330

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           +F+LM+ +G+ PN +T+ S+L  CS+ + +  G S+H   IK  L  +V V +AL+ MY+
Sbjct: 331 VFRLMRCKGLVPNLVTVVSILPCCSNFFGINHGESVHGMVIKFGLAEQVSVVSALVSMYS 390

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           K   +  +  +F+  ++K  + WN++++G + N      +   R+M +E V+P+  T+ S
Sbjct: 391 KLGDLDSAVFLFSSVTEKSQLLWNSLISGYLVNNKWNMVMGSVRRMQIEGVDPDALTVIS 450

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           ++       DL    +IH Y +R        V   L+ +Y+ CG L    K+F  + +  
Sbjct: 451 VISKCRHTEDLHVGKSIHAYAVRSRLELNESVMNALLAMYADCGQLSICCKLFHTMEV-- 508

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
           + ++ W+ II+G+  +G     +  F +M  + +Q + VT  + + + S
Sbjct: 509 RTLISWNTIISGFAENGDSVACLRFFCQMRLADMQFDLVTLIALISSLS 557


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 197/497 (39%), Positives = 293/497 (58%), Gaps = 14/497 (2%)

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
           SV SWN++I+ + ++  + +AL  F  M K  + P+ ++    + +C  L ++  G+ IH
Sbjct: 50  SVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIH 109

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
           +       G +I   +AL+DMY KCG +N+AR +FD + ER+VV+WTSMI+GY  N   R
Sbjct: 110 QQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAR 169

Query: 296 NALGLFQL-----------MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
            A+ LF+            +   GV  +S+ +G ++SAC+ +        +H   +K+  
Sbjct: 170 EAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGF 229

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
           E  + V   L+D YAKC  + +S +VF    +     WN+++A    NGL+ +A  LF  
Sbjct: 230 EGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSD 289

Query: 405 MLVE-VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
           M+    V  N  TL+++L A A    LQ    IH  +++      + V T ++D+Y KCG
Sbjct: 290 MVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCG 349

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            +E A K F  +  K K++  W+V++AGYGMHGHG+ A+ +F EM++ G++PN +TF S 
Sbjct: 350 RVEMARKAFDRL--KRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSV 407

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           L ACSH GLL EG   FN M          +HY+C+VDLLGRAG L EAY LI+ M +KP
Sbjct: 408 LAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKP 467

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643
              VWG+LLGAC IH NVELGE++A+ LF+L+P N G YVLLS +Y+   RW D E +R 
Sbjct: 468 DFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRI 527

Query: 644 VMDEKGLRKAPAHSLIE 660
           +M   GL K P +S++E
Sbjct: 528 LMKNHGLLKTPGYSIVE 544



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 140/464 (30%), Positives = 247/464 (53%), Gaps = 20/464 (4%)

Query: 61  SNVRILFDEMSERSS-FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           +N+R +F +  +++S + +N+++  +A++G S  +L  F  M +L   +P+  T+P  IK
Sbjct: 36  ANLRSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKL-SLHPNRSTFPCTIK 94

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           +C+ L     G  +H +  + G+  D FV + LI MY   G +  ARK+FD + E +VVS
Sbjct: 95  SCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVS 154

Query: 180 WNTLISGYFKNAYAKEALVVF-----------DWMLKSGVEPDCASVVSVLPACGYLKEI 228
           W ++ISGY +N  A+EA+ +F           D ++  GV  D   +  V+ AC  +   
Sbjct: 155 WTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVK 214

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
            +   +H L         +A  N L+D Y KCG ++ +R VFD M E DV +W S+I  Y
Sbjct: 215 SVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVY 274

Query: 289 ALNGDVRNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           A NG    A  LF  M   G VR N++T+ ++L AC+    L+ G+ +H   +K  LE  
Sbjct: 275 AQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDN 334

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           ++V T+++DMY KC  V+++ + F R  +K    W  ++AG   +G  ++A+++F +M+ 
Sbjct: 335 LVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIR 394

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMN-IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
             ++PN  T  S+L A +    L++  +  +     +     +E  + ++D+  + G L+
Sbjct: 395 CGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLK 454

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE----TAVSLFK 506
            A+ +  E+ +K  D +VW  ++    +H + E    +A  LFK
Sbjct: 455 EAYGLIQEMKVK-PDFIVWGSLLGACRIHKNVELGEISARKLFK 497



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 122/410 (29%), Positives = 209/410 (50%), Gaps = 38/410 (9%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLH--AFIITSGP-LFTHLRSSLVRAY--- 57
           P+  T P T       ++  ++   +   KQ+H  AF+   G  +F  + S+L+  Y   
Sbjct: 84  PNRSTFPCT-------IKSCSSLYDLCAGKQIHQQAFVFGYGSDIF--VASALIDMYSKC 134

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN--------- 108
           G++++ R LFDE+ ER+   + +++  Y QN  + +++ +F   L + E +         
Sbjct: 135 GYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGV 194

Query: 109 -PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
             D+     VI AC  +  + +   +HG  +  GF+    VGN L+  Y   GE+  +RK
Sbjct: 195 GVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRK 254

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG-VEPDCASVVSVLPACGYLK 226
           VFD M E  V SWN+LI+ Y +N  + EA  +F  M+K G V  +  ++ +VL AC +  
Sbjct: 255 VFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSG 314

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
            +++G+ IH+ V    L  N+    ++VDMY KCG V  AR  FDR+  ++V +WT M+ 
Sbjct: 315 ALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVA 374

Query: 287 GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346
           GY ++G  + A+ +F  M   G++PN +T  S+L+ACS    LK G     W     ++C
Sbjct: 375 GYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEG-----WHWFNKMKC 429

Query: 347 EVIVE------TALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGC 389
           E  VE      + ++D+  +   +K ++ +      K   + W ++L  C
Sbjct: 430 EFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGAC 479



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 182/370 (49%), Gaps = 38/370 (10%)

Query: 267 RLVFDRMSER-DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           R +F +  ++  V +W S+I  +A +GD   AL  F  M+   + PN  T    + +CSS
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           LY L  G+ +H          ++ V +ALIDMY+KC  +  + ++F    ++  V W ++
Sbjct: 99  LYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSM 158

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPND-------------ATLNSLLPAYAILADLQQ 432
           ++G V N  AR+AV LF++ L  +V+  D               L  ++ A A +     
Sbjct: 159 ISGYVQNERAREAVFLFKEFL--LVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSV 216

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              +H   ++ GF   + V   L+D Y+KCG +  + K+F    +++ D+  W+ +IA Y
Sbjct: 217 TECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFD--GMEETDVCSWNSLIAVY 274

Query: 493 GMHGHGETAVSLFKEMVQSG-VQPNEVTFTSALHACSHGGLLDEGL----DLFNFMLENH 547
             +G    A SLF +MV+ G V+ N VT ++ L AC+H G L  G      +    LE++
Sbjct: 275 AQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDN 334

Query: 548 QTCSRADHYTCIVDLLGRAGRLD---EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
                    T IVD+  + GR++   +A+D ++   +K     W  ++    +HG+   G
Sbjct: 335 LVVG-----TSIVDMYCKCGRVEMARKAFDRLKRKNVKS----WTVMVAGYGMHGH---G 382

Query: 605 EVAAKWLFEL 614
           + A K  +E+
Sbjct: 383 KEAMKVFYEM 392


>gi|18409250|ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75168871|sp|Q9C507.1|PP111_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial; Flags: Precursor
 gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical protein; 27026-24663 [Arabidopsis thaliana]
 gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332196793|gb|AEE34914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 787

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 214/668 (32%), Positives = 366/668 (54%), Gaps = 19/668 (2%)

Query: 6   HHTLPKTTHLVIKLVQQYAATKSIAGTKQ-------LHAFIITSG-PLFTHLRSSLVRAY 57
           +H L   T  + K V   +  ++ AG+++       +H  II  G      + +SL+  Y
Sbjct: 88  YHRLVSETTQISKFVFP-SVLRACAGSREHLSVGGKVHGRIIKGGVDDDAVIETSLLCMY 146

Query: 58  GHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTY 114
           G   N+     +FD M  R    ++T++    +NG    +L+MF  M+  G   PD  T 
Sbjct: 147 GQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMVDDG-VEPDAVTM 205

Query: 115 PIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
             V++ C +L   ++  ++HG++    FD+D  + N L+ MY   G++ ++ ++F+ + +
Sbjct: 206 ISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAK 265

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
            + VSW  +IS Y +  ++++AL  F  M+KSG+EP+  ++ SVL +CG +  I  G+ +
Sbjct: 266 KNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSV 325

Query: 235 HELVAGGRLGKNIAAWN-ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           H       L  N  + + ALV++Y +CG +++   V   +S+R++V W S+I+ YA  G 
Sbjct: 326 HGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGM 385

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
           V  ALGLF+ M  + ++P++ T+ S +SAC +   +  G+ +H   I+ ++  E  V+ +
Sbjct: 386 VIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDVSDE-FVQNS 444

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           LIDMY+K   V  +  VF +   +  V WN++L G   NG + +A+ LF  M    +E N
Sbjct: 445 LIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMN 504

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
           + T  +++ A + +  L++   +H  LI  G L  +   T LID+Y+KCG L +A  +F 
Sbjct: 505 EVTFLAVIQACSSIGSLEKGKWVHHKLIISG-LKDLFTDTALIDMYAKCGDLNAAETVFR 563

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
              +  + IV WS +I  YGMHG   +A+S F +MV+SG +PNEV F + L AC H G +
Sbjct: 564 --AMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSV 621

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
           +EG   FN M ++      ++H+ C +DLL R+G L EAY  I+ MP     +VWG+L+ 
Sbjct: 622 EEGKYYFNLM-KSFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVN 680

Query: 594 ACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKA 653
            C IH  +++ +     L ++  ++ G Y LLS +Y+    W++   +R  M    L+K 
Sbjct: 681 GCRIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSNIYAEEGEWEEFRRLRSAMKSSNLKKV 740

Query: 654 PAHSLIEV 661
           P +S IE+
Sbjct: 741 PGYSAIEI 748



 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 159/564 (28%), Positives = 295/564 (52%), Gaps = 13/564 (2%)

Query: 23  YAATKSIAGTKQLHAFIITSGPLFTHLR--SSLVRAY---GHVSNVRILFDEMSERSSFL 77
           + +  S+    QLHA ++ +G L       + L+ +Y   G   + R++F+      SF+
Sbjct: 8   FRSCSSLRLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYPDSFM 67

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT-DLAWRKLGIALHGR 136
           Y  ++K          ++ ++  ++         + +P V++AC        +G  +HGR
Sbjct: 68  YGVLIKCNVWCHLLDAAIDLYHRLVS-ETTQISKFVFPSVLRACAGSREHLSVGGKVHGR 126

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEA 196
           ++  G D D  +   L+ MY   G +  A KVFD M    +V+W+TL+S   +N    +A
Sbjct: 127 IIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKA 186

Query: 197 LVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
           L +F  M+  GVEPD  +++SV+  C  L  + + R +H  +       +    N+L+ M
Sbjct: 187 LRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLLTM 246

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y KCG +  +  +F+++++++ V+WT+MI+ Y        AL  F  M   G+ PN +T+
Sbjct: 247 YSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTL 306

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEV-IVETALIDMYAKCNLVKLSFQVFARTS 375
            S+LS+C  +  ++ G+S+H + +++ L+     +  AL+++YA+C  +     V    S
Sbjct: 307 YSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCETVLRVVS 366

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
            +  V WN++++   H G+  +A+ LFRQM+ + ++P+  TL S + A      +     
Sbjct: 367 DRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQ 426

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           IH ++IR   +S   V   LID+YSK GS++SA  +F++  IK + +V W+ ++ G+  +
Sbjct: 427 IHGHVIRTD-VSDEFVQNSLIDMYSKSGSVDSASTVFNQ--IKHRSVVTWNSMLCGFSQN 483

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
           G+   A+SLF  M  S ++ NEVTF + + ACS  G L++G  + + ++ +       D 
Sbjct: 484 GNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLKDLFTD- 542

Query: 556 YTCIVDLLGRAGRLDEAYDLIRTM 579
            T ++D+  + G L+ A  + R M
Sbjct: 543 -TALIDMYAKCGDLNAAETVFRAM 565


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  362 bits (929), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 206/567 (36%), Positives = 311/567 (54%), Gaps = 40/567 (7%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H + LI G  + T     LI   ++   +  AR V D     +  SWN+LI  Y  +  
Sbjct: 18  IHAQTLIHGLPLQTH----LIPKLIDLHSIDYARFVLDQTPSPTDFSWNSLIRAYTVHGS 73

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            + +L ++  ML+S  +P   +   VL AC  L  +  G  IH  V     G ++   N+
Sbjct: 74  PQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNS 133

Query: 253 LVDMYVKC-------------------------------GSVNEARLVFDRMS-ERDVVT 280
           L+DMY KC                               G V +AR +F+ M   R+VV 
Sbjct: 134 LIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNVVC 193

Query: 281 WTSMINGYALNGDVRNALGLFQ--LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           WT+MINGY   GD    L LF+  L+  + V+PN+ T+  LLSACS+L   + GR L  +
Sbjct: 194 WTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVF 253

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
                +    I+ TALIDMY+KC  V+ ++++F   S K    WNAI+ GCV  GL  +A
Sbjct: 254 IDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEA 313

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
           ++L+R M  + V+PN+ TL ++L A A L  L+    +H YL R G    V ++T L+D+
Sbjct: 314 IDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDM 373

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           Y+KCG ++ A  IF  +   +KD+ +W+ +I G   HG G  ++++F +MV++GVQPN+V
Sbjct: 374 YAKCGKIDDACLIF--VKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDV 431

Query: 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578
           TF   L AC+H GL++EG   F+ M + H    + +HY C+VDLLGRAG L EAY+L++ 
Sbjct: 432 TFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQN 491

Query: 579 MPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDA 638
           M + P   +WGALL AC IH N+EL +  ++ +   +  N G  +LLS +Y++  RWKD 
Sbjct: 492 MLIPPDSIIWGALLSACRIHRNLELADKISETIMASQDPNIGFCILLSNIYASSGRWKDV 551

Query: 639 ENVRDVMDEKGLRKAPAHSLIEVRNIL 665
             VR  + EK ++K    S +EV  ++
Sbjct: 552 ARVRRQVKEKRIKKPSGCSWVEVDGVV 578



 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 159/525 (30%), Positives = 270/525 (51%), Gaps = 40/525 (7%)

Query: 28  SIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYA 86
           S+    Q+HA  +  G PL THL   L+  +  +   R + D+    + F +N++++ Y 
Sbjct: 11  SLTQIHQIHAQTLIHGLPLQTHLIPKLIDLHS-IDYARFVLDQTPSPTDFSWNSLIRAYT 69

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
            +G+  +SL ++L MLR     P N+T+P V+KAC+ L     G  +H  VL  GF  D 
Sbjct: 70  VHGSPQNSLFLYLKMLR-SSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDL 128

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK----------------- 189
           FV N LI MY     + +AR  +D M     VSWN++ISGY +                 
Sbjct: 129 FVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMR 188

Query: 190 ----------NAYAKEA-----LVVFDWMLKSG--VEPDCASVVSVLPACGYLKEIEMGR 232
                     N Y KE      L +F  ML S   V+P+ A++V +L AC  L   E+GR
Sbjct: 189 RNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEVGR 248

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            +   +   ++  N     AL+DMY KCG V +A  +FD +S +++ +W ++I G    G
Sbjct: 249 FLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGG 308

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
            +  A+ L++ M+ + V+PN +T+ ++LSAC+ L  L+ GR +H +  +  L+  VI+ T
Sbjct: 309 LLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILAT 368

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           AL+DMYAKC  +  +  +F +TS+K    WNA++ G  ++G  R ++ +F QM+   V+P
Sbjct: 369 ALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQP 428

Query: 413 NDATLNSLLPAYAILADLQQA-MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           ND T   +L A      +++  +       ++G    +E    ++D+  + G L+ A+++
Sbjct: 429 NDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYEL 488

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
              + I   D ++W  +++   +H + E A  +  E + +   PN
Sbjct: 489 VQNMLIP-PDSIIWGALLSACRIHRNLELADKI-SETIMASQDPN 531



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 16/199 (8%)

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           LL        L Q   IH   + +G      +   LID++S    ++ A  +  + P   
Sbjct: 2   LLSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLHS----IDYARFVLDQTPSPT 57

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
                W+ +I  Y +HG  + ++ L+ +M++S  +P+  TF   L ACS  G + EG  +
Sbjct: 58  D--FSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQI 115

Query: 540 FNFMLENHQTCSRADHYTC--IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
              +L   +    +D + C  ++D+  +  RLD A +    M  +     W +++   V 
Sbjct: 116 HTHVL---RLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFR-DEVSWNSIISGYVQ 171

Query: 598 HGNVELGEVAAKWLFELEP 616
            G VE     A+ LFE  P
Sbjct: 172 WGQVE----KARDLFEEMP 186


>gi|302793382|ref|XP_002978456.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
 gi|300153805|gb|EFJ20442.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
          Length = 899

 Score =  362 bits (929), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 218/643 (33%), Positives = 347/643 (53%), Gaps = 21/643 (3%)

Query: 33  KQLHAFIITSGPLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNG 89
           K +H   + +G     + +++V  YG    V   + +F+ + ER+   +N ++   AQNG
Sbjct: 147 KAIHDCAVLAGMETQVVGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNG 206

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              D++++F  M   G   P++ T+  V+ AC++L     G + H R++ TGFD   FVG
Sbjct: 207 HCKDAMQVFHLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVG 266

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N L+ MY   G V  AR VF+ M   +VVSW  +I  Y +  + + A   FD   +   E
Sbjct: 267 NSLVNMYGKCGSVDRARLVFEKMSSRNVVSWTVMIWAYAQQGFIRAA---FDLYKRMDCE 323

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           P+  + ++V+ +C   +++     IH  +       +      LV MY KCGSV+ A  +
Sbjct: 324 PNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFDSDAVLQVCLVTMYGKCGSVDSAWSI 383

Query: 270 FDRMSER--DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           F+ + ER  + VTW +MI+G A +G+ + AL  F  M+ EGVRPNS+T  + L ACSSL 
Sbjct: 384 FENLKERSNNAVTWNAMISGLAQHGESKQALECFWKMELEGVRPNSVTYLASLEACSSLN 443

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L RGR LHA  + +N+  E  +  A+I+MY KC  +  +   FA+  ++  V WN ++A
Sbjct: 444 DLTRGRQLHARILLENIH-EANLSNAVINMYGKCGSLDEAMDEFAKMPERDVVSWNTMIA 502

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG--F 445
               +G  R+A+E F+QM +E    + AT    + A   +  L     IH  +       
Sbjct: 503 TYAQHGSGRQALEFFKQMDLEGWTTDRATYLGAIDACGSVPSLALGKTIHSIVATAAPCL 562

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
                V+T L+ +Y++CGSL  A  +F       +++V WS +IA    HG    A+ LF
Sbjct: 563 EQDPGVATALVTMYARCGSLHDAKSVFWR--SHSRNLVTWSNLIAACAQHGRENEALDLF 620

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
           +EM   G +P+ +TF++ + ACS  G++ +G+  F  M+E++   +  DH+  +VDLLGR
Sbjct: 621 REMQLQGTKPDALTFSTLVAACSRRGVVKDGVFYFVSMVEDYSIPASEDHFGGMVDLLGR 680

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNY--- 622
           AG L+EA  ++R  P    HAV   LLGAC +HG+VE G   A+   EL+ +N  ++   
Sbjct: 681 AGWLEEAEQVMRKNPCALAHAV---LLGACHVHGDVERGIRIAQSALELDWKNSASFAAS 737

Query: 623 -VLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP-AHSLIEVRN 663
             +L++LY A  RW+DA  VR  ++ +  R+ P   S IEV+N
Sbjct: 738 MAMLAELYGAAGRWEDAARVRKAVESRNARREPGGRSWIEVKN 780



 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 161/515 (31%), Positives = 268/515 (52%), Gaps = 12/515 (2%)

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
            A+  SL+  +  L+    +     Y  +++ CT+      G  +H  +L +G  ++ ++
Sbjct: 4   AATELSLQTHINQLKKSSESLQPARYASLLQKCTEQKSAAAGKLVHQHILSSGCGVNRYI 63

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N LI MY   G ++ A +VF+ +   +V SW  LI+ Y K  + +E L +F  M   G 
Sbjct: 64  QNHLIFMYAKCGCLEDALEVFELLPNPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGT 123

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +PD     +VL AC     +  G+ IH+      +   +   NA+V++Y KCG V+EA+ 
Sbjct: 124 KPDAFVFSTVLTACSSAGALNEGKAIHDCAVLAGMETQVVG-NAIVNLYGKCGRVHEAKA 182

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLY 327
           VF+R+ ER++V+W ++I   A NG  ++A+ +F LM  +G VRPN  T  S++ ACS+L 
Sbjct: 183 VFERLPERNLVSWNALIAANAQNGHCKDAMQVFHLMDLDGSVRPNDATFVSVVDACSNLL 242

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L RG+S H   I+   +  + V  +L++MY KC  V  +  VF + S +  V W  ++ 
Sbjct: 243 DLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVSWTVMIW 302

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
                G  R A +L+++M     EPN  T  +++ +     DL +A  IH +++  GF S
Sbjct: 303 AYAQQGFIRAAFDLYKRM---DCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFDS 359

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
              +   L+ +Y KCGS++SA  IF  +  +  + V W+ +I+G   HG  + A+  F +
Sbjct: 360 DAVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQHGESKQALECFWK 419

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF-NFMLEN-HQTCSRADHYTCIVDLLGR 565
           M   GV+PN VT+ ++L ACS    L  G  L    +LEN H+    A+    ++++ G+
Sbjct: 420 MELEGVRPNSVTYLASLEACSSLNDLTRGRQLHARILLENIHE----ANLSNAVINMYGK 475

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
            G LDEA D    MP +     W  ++     HG+
Sbjct: 476 CGSLDEAMDEFAKMPERDV-VSWNTMIATYAQHGS 509



 Score =  269 bits (687), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 179/616 (29%), Positives = 296/616 (48%), Gaps = 71/616 (11%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLY 78
           L+Q+    KS A  K +H  I++SG                                ++ 
Sbjct: 32  LLQKCTEQKSAAAGKLVHQHILSSGCGVNR---------------------------YIQ 64

Query: 79  NTVMKMYAQNGASHDSLKMF---------------------------LGMLR---LGEYN 108
           N ++ MYA+ G   D+L++F                           LG+ R   L    
Sbjct: 65  NHLIFMYAKCGCLEDALEVFELLPNPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTK 124

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           PD + +  V+ AC+       G A+H   ++ G +    VGN ++ +Y   G V  A+ V
Sbjct: 125 PDAFVFSTVLTACSSAGALNEGKAIHDCAVLAGMETQV-VGNAIVNLYGKCGRVHEAKAV 183

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM-LKSGVEPDCASVVSVLPACGYLKE 227
           F+ + E ++VSWN LI+   +N + K+A+ VF  M L   V P+ A+ VSV+ AC  L +
Sbjct: 184 FERLPERNLVSWNALIAANAQNGHCKDAMQVFHLMDLDGSVRPNDATFVSVVDACSNLLD 243

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +  G+  HE +        +   N+LV+MY KCGSV+ ARLVF++MS R+VV+WT MI  
Sbjct: 244 LPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVSWTVMIWA 303

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           YA  G +R A  L++ M  E   PN++T  +++ +C     L R   +HA  +    + +
Sbjct: 304 YAQQGFIRAAFDLYKRMDCE---PNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFDSD 360

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKT--VPWNAILAGCVHNGLARKAVELFRQM 405
            +++  L+ MY KC  V  ++ +F    ++    V WNA+++G   +G +++A+E F +M
Sbjct: 361 AVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQHGESKQALECFWKM 420

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
            +E V PN  T  + L A + L DL +   +H  ++    +    +S  +I++Y KCGSL
Sbjct: 421 ELEGVRPNSVTYLASLEACSSLNDLTRGRQLHARILLEN-IHEANLSNAVINMYGKCGSL 479

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
           + A   F+++P  ++D+V W+ +IA Y  HG G  A+  FK+M   G   +  T+  A+ 
Sbjct: 480 DEAMDEFAKMP--ERDVVSWNTMIATYAQHGSGRQALEFFKQMDLEGWTTDRATYLGAID 537

Query: 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADH--YTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           AC     L  G  + + ++     C   D    T +V +  R G L +A  +      + 
Sbjct: 538 ACGSVPSLALGKTIHS-IVATAAPCLEQDPGVATALVTMYARCGSLHDAKSVFWRSHSRN 596

Query: 584 THAVWGALLGACVIHG 599
               W  L+ AC  HG
Sbjct: 597 L-VTWSNLIAACAQHG 611



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 129/418 (30%), Positives = 217/418 (51%), Gaps = 10/418 (2%)

Query: 213 ASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR 272
           A   S+L  C   K    G+++H+ +     G N    N L+ MY KCG + +A  VF+ 
Sbjct: 27  ARYASLLQKCTEQKSAAAGKLVHQHILSSGCGVNRYIQNHLIFMYAKCGCLEDALEVFEL 86

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
           +   +V +WT++I  YA  G +R  LGLF+ MQ +G +P++    ++L+ACSS   L  G
Sbjct: 87  LPNPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPDAFVFSTVLTACSSAGALNEG 146

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           +++H   +   +E +V V  A++++Y KC  V  +  VF R  ++  V WNA++A    N
Sbjct: 147 KAIHDCAVLAGMETQV-VGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQN 205

Query: 393 GLARKAVELFRQMLVE-VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEV 451
           G  + A+++F  M ++  V PNDAT  S++ A + L DL +  + H  +IR GF S + V
Sbjct: 206 GHCKDAMQVFHLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFV 265

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
              L+++Y KCGS++ A  +F +  +  +++V W+V+I  Y   G    A  L+K M   
Sbjct: 266 GNSLVNMYGKCGSVDRARLVFEK--MSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRM--- 320

Query: 512 GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571
             +PN VTF + + +C     L     +   M+ +    S A    C+V + G+ G +D 
Sbjct: 321 DCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFD-SDAVLQVCLVTMYGKCGSVDS 379

Query: 572 AYDLIRTMPLKPTHAV-WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           A+ +   +  +  +AV W A++     HG  +   +   W  ELE   P +   L+ L
Sbjct: 380 AWSIFENLKERSNNAVTWNAMISGLAQHGESKQA-LECFWKMELEGVRPNSVTYLASL 436


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  362 bits (929), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 210/621 (33%), Positives = 341/621 (54%), Gaps = 17/621 (2%)

Query: 52  SLVRAYGHVSNVRILFDEM---SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN 108
           SL    G  +    +F+ M    +R    ++ +M  Y  NG   D++K+F+  L LG   
Sbjct: 105 SLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELG-LV 163

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITG-FDMDTFVGNCLIAMYMNFGE--VKAA 165
           P++Y Y  VI+AC++  +  +G    G ++ TG F+ D  VG  LI M++  GE   + A
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVK-GENSFENA 222

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
            KVFD M E +VV+W  +I+   +  + +EA+  F  M+ SG E D  ++ SV  AC  L
Sbjct: 223 YKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAEL 282

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC---GSVNEARLVFDRMSERDVVTWT 282
           + + +G+ +H       L  ++    +LVDMY KC   GSV++ R VFDRM +  V++WT
Sbjct: 283 ENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWT 340

Query: 283 SMINGYALNGDV-RNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           ++I GY  N ++   A+ LF  M  +G V PN  T  S   AC +L   + G+ +     
Sbjct: 341 ALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAF 400

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
           K+ L     V  ++I M+ K + ++ + + F   S+K  V +N  L G   N    +A +
Sbjct: 401 KRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFK 460

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
           L  ++    +  +  T  SLL   A +  +++   IH  +++ G      V   LI +YS
Sbjct: 461 LLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYS 520

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           KCGS+++A ++F+   +++++++ W+ +I G+  HG     +  F +M++ GV+PNEVT+
Sbjct: 521 KCGSIDTASRVFN--FMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTY 578

Query: 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
            + L ACSH GL+ EG   FN M E+H+   + +HY C+VDLL RAG L +A++ I TMP
Sbjct: 579 VAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP 638

Query: 581 LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAEN 640
            +    VW   LGAC +H N ELG++AA+ + EL+P  P  Y+ LS +Y+   +W+++  
Sbjct: 639 FQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTE 698

Query: 641 VRDVMDEKGLRKAPAHSLIEV 661
           +R  M E+ L K    S IEV
Sbjct: 699 MRRKMKERNLVKEGGCSWIEV 719



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 141/511 (27%), Positives = 250/511 (48%), Gaps = 20/511 (3%)

Query: 101 MLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG 160
           M R G    D+ T+  ++K+C      +LG  +H R++    + D+ + N LI++Y   G
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSG 111

Query: 161 EVKAARKVFDAMW---EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVS 217
           +   A  VF+ M    +  VVSW+ +++ Y  N    +A+ VF   L+ G+ P+     +
Sbjct: 112 DSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTA 171

Query: 218 VLPACGYLKEIEMGRM-IHELVAGGRLGKNIAAWNALVDMYVKC-GSVNEARLVFDRMSE 275
           V+ AC     + +GR+ +  L+  G    ++    +L+DM+VK   S   A  VFD+MSE
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231

Query: 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
            +VVTWT MI      G  R A+  F  M   G   +  T+ S+ SAC+ L  L  G+ L
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQL 291

Query: 336 HAWTIKQNLECEVIVETALIDMYAKCNL---VKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           H+W I+  L  +  VE +L+DMYAKC+    V    +VF R      + W A++ G + N
Sbjct: 292 HSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKN 349

Query: 393 -GLARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
             LA +A+ LF +M+ +  VEPN  T +S   A   L+D +    +     + G  S   
Sbjct: 350 CNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSS 409

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           V+  +I ++ K   +E A + F    + +K++V ++  + G   + + E A  L  E+ +
Sbjct: 410 VANSVISMFVKSDRMEDAQRAFE--SLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITE 467

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC--IVDLLGRAGR 568
             +  +  TF S L   ++ G + +G  + + +++   +C++     C  ++ +  + G 
Sbjct: 468 RELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQP---VCNALISMYSKCGS 524

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           +D A  +   M  +   + W +++     HG
Sbjct: 525 IDTASRVFNFMENRNVIS-WTSMITGFAKHG 554



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 154/314 (49%), Gaps = 23/314 (7%)

Query: 292 GDVRNALGLFQLMQFEGVRP-NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           GD+R A+    LM  +G+RP +S+T  SLL +C      + G+ +HA  I+ ++E + ++
Sbjct: 40  GDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVL 99

Query: 351 ETALIDMYAKCN---LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
             +LI +Y+K       +  F+   R  K+  V W+A++A   +NG    A+++F + L 
Sbjct: 100 YNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLE 159

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG-FLSVVEVSTGLIDIYSKC-GSL 465
             + PND    +++ A +    +        +L++ G F S V V   LID++ K   S 
Sbjct: 160 LGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSF 219

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
           E+A+K+F +  + + ++V W+++I      G    A+  F +MV SG + ++ T +S   
Sbjct: 220 ENAYKVFDK--MSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFS 277

Query: 526 ACSHGGLLDEGLDLFNFMLE----NHQTCSRADHYT-CIVDLLGRAGRLDEAYDLIRTMP 580
           AC+    L  G  L ++ +     +   CS  D Y  C  D     G +D+   +   M 
Sbjct: 278 ACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSAD-----GSVDDCRKVFDRM- 331

Query: 581 LKPTHAV--WGALL 592
               H+V  W AL+
Sbjct: 332 --EDHSVMSWTALI 343


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 217/622 (34%), Positives = 334/622 (53%), Gaps = 31/622 (4%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKM-FLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
           +S + +F +N+++   A+N   +    + F   ++      +N+T+P ++KAC  L    
Sbjct: 13  ISHKDTFHWNSLI---AKNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLL 69

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV--VSWNTLISG 186
             + +H  +   G   D F    L+  Y   G    A +VFD M E SV  VSW  LIS 
Sbjct: 70  PTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 187 YFKNAYAKEALVVFD---WMLK-SGVEP---DCASVVSVLPACGY---LKEIEMGRMIHE 236
           Y  N    EA   F    WM    G E    D  S+ +++ AC        +  G  +H 
Sbjct: 130 YSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHG 189

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFD--RMSERDVVTWTSMINGYALNGDV 294
           LV     G +    N++V MY  C  V  A  VF+   + +RDVV+W S+I+G+ LNG+ 
Sbjct: 190 LVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEA 249

Query: 295 RNALGLFQLMQFEG---VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN----LECE 347
             AL  F+ M  EG   V PN +T+ +LL +C+ L  ++    +H +   ++    +  +
Sbjct: 250 ERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKD 309

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           V+V TAL+DM+A+C  + L+ ++F     K  V W+A++AG        +A+ LFRQML+
Sbjct: 310 VVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLM 369

Query: 408 E------VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
           E       V+PN  TL S++ A + L   + A  IH Y +  G      +++ LID+ +K
Sbjct: 370 EGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAK 429

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
           CG +E   ++FSE+    + +V WS +I   G+HG G+ A+ LF EM   G +PNE+T+ 
Sbjct: 430 CGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYI 489

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581
           S L ACSH GL+++G   FN M +++       HY C+VDLLGRAG LDEA+++I  MP+
Sbjct: 490 SVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPI 549

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENV 641
           K   A+WG+LL AC +HGN +LGE+  K +  L+  + G++VLL+ +Y    RW D   +
Sbjct: 550 KADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRM 609

Query: 642 RDVMDEKGLRKAPAHSLIEVRN 663
           R  +   GLRK P  S IE+ N
Sbjct: 610 RVELRRSGLRKIPGQSFIEIGN 631



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 121/250 (48%), Gaps = 15/250 (6%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG-----EYNPDNY 112
           G+++  R +FD +  ++   ++ ++  Y Q     ++L++F  ML  G     E  P+  
Sbjct: 324 GNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAV 383

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           T   VI AC+ L   +    +H   + TG D D  + + LI M    G+++  R+VF  M
Sbjct: 384 TLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEM 443

Query: 173 WE--HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
            E   +VVSW+++I     +   K AL +F  M   G EP+  + +SVL AC +   +E 
Sbjct: 444 DESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQ 503

Query: 231 GR----MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMI 285
           G+     + +       GK+ A    LVD+  + G ++EA  V   M  + D+  W S++
Sbjct: 504 GKSCFNSMEKDYGMSPTGKHYA---CLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLL 560

Query: 286 NGYALNGDVR 295
               L+G+ +
Sbjct: 561 AACHLHGNCK 570


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 217/622 (34%), Positives = 334/622 (53%), Gaps = 31/622 (4%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKM-FLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
           +S + +F +N+++   A+N   +    + F   ++      +N+T+P ++KAC  L    
Sbjct: 13  ISHKDTFHWNSLI---AKNATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLL 69

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV--VSWNTLISG 186
             + +H  +   G   D F    L+  Y   G    A +VFD M E SV  VSW  LIS 
Sbjct: 70  PTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISA 129

Query: 187 YFKNAYAKEALVVFD---WMLK-SGVEP---DCASVVSVLPACGY---LKEIEMGRMIHE 236
           Y  N    EA   F    WM    G E    D  S+ +++ AC        +  G  +H 
Sbjct: 130 YSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHG 189

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFD--RMSERDVVTWTSMINGYALNGDV 294
           LV     G +    N++V MY  C  V  A  VF+   + +RDVV+W S+I+G+ LNG+ 
Sbjct: 190 LVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEA 249

Query: 295 RNALGLFQLMQFEG---VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN----LECE 347
             AL  F+ M  EG   V PN +T+ +LL +C+ L  ++    +H +   ++    +  +
Sbjct: 250 ERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKD 309

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           V+V TAL+DM+A+C  + L+ ++F     K  V W+A++AG        +A+ LFRQML+
Sbjct: 310 VVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLM 369

Query: 408 E------VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
           E       V+PN  TL S++ A + L   + A  IH Y +  G      +++ LID+ +K
Sbjct: 370 EGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAK 429

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
           CG +E   ++FSE+    + +V WS +I   G+HG G+ A+ LF EM   G +PNE+T+ 
Sbjct: 430 CGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYI 489

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581
           S L ACSH GL+++G   FN M +++       HY C+VDLLGRAG LDEA+++I  MP+
Sbjct: 490 SVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPI 549

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENV 641
           K   A+WG+LL AC +HGN +LGE+  K +  L+  + G++VLL+ +Y    RW D   +
Sbjct: 550 KADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRM 609

Query: 642 RDVMDEKGLRKAPAHSLIEVRN 663
           R  +   GLRK P  S IE+ N
Sbjct: 610 RVELRRSGLRKIPGQSFIEIGN 631



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 121/250 (48%), Gaps = 15/250 (6%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG-----EYNPDNY 112
           G+++  R +FD +  ++   ++ ++  Y Q     ++L++F  ML  G     E  P+  
Sbjct: 324 GNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAV 383

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           T   VI AC+ L   +    +H   + TG D D  + + LI M    G+++  R+VF  M
Sbjct: 384 TLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEM 443

Query: 173 WE--HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
            E   +VVSW+++I     +   K AL +F  M   G EP+  + +SVL AC +   +E 
Sbjct: 444 DESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQ 503

Query: 231 GR----MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMI 285
           G+     + +       GK+ A    LVD+  + G ++EA  V   M  + D+  W S++
Sbjct: 504 GKSCFNSMEKDYGMSPTGKHYA---CLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLL 560

Query: 286 NGYALNGDVR 295
               L+G+ +
Sbjct: 561 AACHLHGNCK 570


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 199/533 (37%), Positives = 306/533 (57%), Gaps = 8/533 (1%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           LH   +  G+  DTFV + L  +Y     V  ARKVFD +     V WNTL++G      
Sbjct: 136 LHALAVAAGYAADTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGL----S 191

Query: 193 AKEALVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
             EA+  F  M+  G V PD  ++ SVLPA   + ++ MGR +H       L ++     
Sbjct: 192 GSEAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLT 251

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            L+ +Y KCG V  AR +FD M + D+V + ++I+GY++NG V +++ LF  +   G+ P
Sbjct: 252 GLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWP 311

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           NS T+ +L+   S   +    + LH + +K        V TA+  ++ + N ++ + + F
Sbjct: 312 NSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAF 371

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
               +K    WNA+++G   NGL   AV LF QM+   V PN  T++S L A A L  L 
Sbjct: 372 DTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALS 431

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               +H  +        V V T LID+Y+KCGS+  A +IF+ +   +K++V W+ +IAG
Sbjct: 432 LGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTM--DNKNVVSWNAMIAG 489

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           YG+HG G  A+ L+K+M+ + + P   TF S L+ACSHGGL++EG  +F  M +++    
Sbjct: 490 YGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINP 549

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT-HAVWGALLGACVIHGNVELGEVAAKW 610
             +H TC+VDLLGRAG+L EA++LI   P       VWGALLGAC++H + +L ++A++ 
Sbjct: 550 GIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQK 609

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           LFEL+PEN G YVLLS L+++ +++ +A  VR     + L K P ++LIE+ N
Sbjct: 610 LFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGN 662



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 132/459 (28%), Positives = 230/459 (50%), Gaps = 8/459 (1%)

Query: 47  THLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR 103
           T + S+L + Y     V + R +FD +    + L+NT++   + +    ++++ F  M+ 
Sbjct: 149 TFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMVC 204

Query: 104 LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163
            G   PD  T   V+ A  ++A   +G  +H      G      V   LI++Y   G+V+
Sbjct: 205 DGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVE 264

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
           +AR +FD M +  +V++N LISGY  N     ++ +F  ++  G+ P+ +++V+++P   
Sbjct: 265 SARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHS 324

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
                 + + +H  V       N     A+  ++ +   +  AR  FD M E+ + +W +
Sbjct: 325 PFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNA 384

Query: 284 MINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN 343
           MI+GYA NG    A+ LF+ M    VRPN +TI S LSAC+ L  L  G+ LH    +++
Sbjct: 385 MISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEED 444

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
           LE  V V TALIDMYAKC  +  + ++F     K  V WNA++AG   +G   +A++L++
Sbjct: 445 LEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYK 504

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI-RYGFLSVVEVSTGLIDIYSKC 462
            ML   + P  AT  S+L A +    +++   +   +   Y     +E  T ++D+  + 
Sbjct: 505 DMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRA 564

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           G L+ A ++ SE P       VW  ++    +H   + A
Sbjct: 565 GQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLA 603


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 210/621 (33%), Positives = 341/621 (54%), Gaps = 17/621 (2%)

Query: 52  SLVRAYGHVSNVRILFDEM---SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN 108
           SL    G  +    +F+ M    +R    ++ +M  Y  NG   D++K+F+  L LG   
Sbjct: 105 SLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELG-LV 163

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITG-FDMDTFVGNCLIAMYMNFGE--VKAA 165
           P++Y Y  VI+AC++  +  +G    G ++ TG F+ D  VG  LI M++  GE   + A
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVK-GENSFENA 222

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
            KVFD M E +VV+W  +I+   +  + +EA+  F  M+ SG E D  ++ SV  AC  L
Sbjct: 223 YKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAEL 282

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC---GSVNEARLVFDRMSERDVVTWT 282
           + + +G+ +H       L  ++    +LVDMY KC   GSV++ R VFDRM +  V++WT
Sbjct: 283 ENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWT 340

Query: 283 SMINGYALNGDV-RNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           ++I GY  N ++   A+ LF  M  +G V PN  T  S   AC +L   + G+ +     
Sbjct: 341 ALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAF 400

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
           K+ L     V  ++I M+ K + ++ + + F   S+K  V +N  L G   N    +A +
Sbjct: 401 KRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFK 460

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
           L  ++    +  +  T  SLL   A +  +++   IH  +++ G      V   LI +YS
Sbjct: 461 LLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYS 520

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           KCGS+++A ++F+ +  ++++++ W+ +I G+  HG     +  F +M++ GV+PNEVT+
Sbjct: 521 KCGSIDTASRVFNFM--ENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTY 578

Query: 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
            + L ACSH GL+ EG   FN M E+H+   + +HY C+VDLL RAG L +A++ I TMP
Sbjct: 579 VAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMP 638

Query: 581 LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAEN 640
            +    VW   LGAC +H N ELG++AA+ + EL+P  P  Y+ LS +Y+   +W+++  
Sbjct: 639 FQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTE 698

Query: 641 VRDVMDEKGLRKAPAHSLIEV 661
           +R  M E+ L K    S IEV
Sbjct: 699 MRRKMKERNLVKEGGCSWIEV 719



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 140/509 (27%), Positives = 249/509 (48%), Gaps = 16/509 (3%)

Query: 101 MLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG 160
           M R G    D+ T+  ++K+C      +LG  +H R++    + D+ + N LI++Y   G
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSG 111

Query: 161 EVKAARKVFDAM---WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVS 217
           +   A  VF+ M    +  VVSW+ +++ Y  N    +A+ VF   L+ G+ P+     +
Sbjct: 112 DSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTA 171

Query: 218 VLPACGYLKEIEMGRM-IHELVAGGRLGKNIAAWNALVDMYVKC-GSVNEARLVFDRMSE 275
           V+ AC     + +GR+ +  L+  G    ++    +L+DM+VK   S   A  VFD+MSE
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231

Query: 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
            +VVTWT MI      G  R A+  F  M   G   +  T+ S+ SAC+ L  L  G+ L
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQL 291

Query: 336 HAWTIKQNLECEVIVETALIDMYAKCNL---VKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           H+W I+  L  +  VE +L+DMYAKC+    V    +VF R      + W A++ G + N
Sbjct: 292 HSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKN 349

Query: 393 -GLARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
             LA +A+ LF +M+ +  VEPN  T +S   A   L+D +    +     + G  S   
Sbjct: 350 CNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSS 409

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           V+  +I ++ K   +E A + F    + +K++V ++  + G   + + E A  L  E+ +
Sbjct: 410 VANSVISMFVKSDRMEDAQRAFES--LSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITE 467

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
             +  +  TF S L   ++ G + +G  + + +++   +C++      ++ +  + G +D
Sbjct: 468 RELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQP-VCNALISMYSKCGSID 526

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            A  +   M  +   + W +++     HG
Sbjct: 527 TASRVFNFMENRNVIS-WTSMITGFAKHG 554



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 154/314 (49%), Gaps = 23/314 (7%)

Query: 292 GDVRNALGLFQLMQFEGVRP-NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           GD+R A+    LM  +G+RP +S+T  SLL +C      + G+ +HA  I+ ++E + ++
Sbjct: 40  GDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVL 99

Query: 351 ETALIDMYAKCN---LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
             +LI +Y+K       +  F+   R  K+  V W+A++A   +NG    A+++F + L 
Sbjct: 100 YNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLE 159

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG-FLSVVEVSTGLIDIYSKC-GSL 465
             + PND    +++ A +    +        +L++ G F S V V   LID++ K   S 
Sbjct: 160 LGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSF 219

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
           E+A+K+F +  + + ++V W+++I      G    A+  F +MV SG + ++ T +S   
Sbjct: 220 ENAYKVFDK--MSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFS 277

Query: 526 ACSHGGLLDEGLDLFNFMLE----NHQTCSRADHYT-CIVDLLGRAGRLDEAYDLIRTMP 580
           AC+    L  G  L ++ +     +   CS  D Y  C  D     G +D+   +   M 
Sbjct: 278 ACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSAD-----GSVDDCRKVFDRM- 331

Query: 581 LKPTHAV--WGALL 592
               H+V  W AL+
Sbjct: 332 --EDHSVMSWTALI 343


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 196/608 (32%), Positives = 330/608 (54%), Gaps = 4/608 (0%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +G +S  R LFD M ER++  +  ++  Y Q+  S ++ +++  M R G   PD  T   
Sbjct: 87  FGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRR-GGIEPDYVTLVT 145

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           ++    +L  + + + +H  V+  G++ +  V N L+  Y     +  A ++F  M    
Sbjct: 146 LLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKD 205

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
            V++N+L++GY      +EA+ +F  +  SG++P   +  ++L A   L + + G+ +H 
Sbjct: 206 TVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHG 265

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            V       N+   NAL+D Y K   V+E   +F  M E D +++  +I  YA NG  + 
Sbjct: 266 FVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKE 325

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           +  LF+ +QF           +LLS  +S   L+ GR +H   I      E  VE AL+D
Sbjct: 326 SFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVD 385

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MYAKCN  K + ++F   + K TVPW A+++  V  G   + + +F  M    V  + AT
Sbjct: 386 MYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQAT 445

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
             S+L A A LA +     +H  LIR GF+S V   + L+D Y+KCG +  A K F E+P
Sbjct: 446 FASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMP 505

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
             +++ V W+ +I+ Y  +G+ +  ++ F++M+QSG +P+ V+F S L ACSH G ++E 
Sbjct: 506 --ERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEA 563

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
           L  FN M + ++   + +HYT +VD+L R GR DEA  L+  MP +P+  +W ++L +C 
Sbjct: 564 LWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCR 623

Query: 597 IHGNVELGEVAAKWLFELEP-ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
           IH N EL + AA  LF +E   +   Y+ +S +Y+   +W +   V+  M ++G+RK PA
Sbjct: 624 IHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPA 683

Query: 656 HSLIEVRN 663
           +S +E+++
Sbjct: 684 YSWVEIKH 691



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 132/458 (28%), Positives = 227/458 (49%), Gaps = 4/458 (0%)

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           +T   N +I+ ++ FG++  AR++FD M E + VSW  LI GY ++  +KEA  ++  M 
Sbjct: 73  NTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMR 132

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
           + G+EPD  ++V++L   G L+   +   IH  V       N+   N+LVD Y K   + 
Sbjct: 133 RGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLY 192

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
            A  +F  M  +D VT+ S++ GY+  G    A+ LF  +   G++P+  T  +LLSA  
Sbjct: 193 LASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAV 252

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
            L   K G+ +H + +K N    V V  AL+D Y+K + V    ++F    +   + +N 
Sbjct: 253 GLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNV 312

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           ++     NG  +++ +LFR++     +       +LL       +L+    IHC  I  G
Sbjct: 313 VITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVG 372

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
                 V   L+D+Y+KC   + A KIF  I    K  V W+ +I+ Y   G  E  +++
Sbjct: 373 ANFESRVENALVDMYAKCNGDKEAQKIFDNIAC--KSTVPWTAMISAYVQKGKHEEGINV 430

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           F +M ++GV  ++ TF S L AC++   +  G  L + ++ +    S     + ++D   
Sbjct: 431 FSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRS-GFMSNVYSGSALLDTYA 489

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           + G + +A      MP + +   W AL+ A   +GNV+
Sbjct: 490 KCGCMTDAIKSFGEMPERNS-VSWNALISAYAQNGNVD 526



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 195/414 (47%), Gaps = 32/414 (7%)

Query: 203 MLKSGVEPD-CASVVSVLPACGYLKEIEMGRMIHELVAGGRL-GKNIAAWNALVDMYVKC 260
           ++K+G  P+ C S   V         +E G ++H      ++  KN  + N ++  ++K 
Sbjct: 34  IVKTGFNPNTCRSNFQVN------NFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKF 87

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           G +++AR +FD M ER  V+WT +I GY  +   + A  L+  M+  G+ P+ +T+ +LL
Sbjct: 88  GKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLL 147

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           S    L        +H   IK   E  ++V  +L+D Y K + + L+ Q+F     K TV
Sbjct: 148 SGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTV 207

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            +N+++ G  + GL  +A+ELF ++    ++P+D T  +LL A   L D +    +H ++
Sbjct: 208 TFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFV 267

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           ++  F+  V V   L+D YSK   ++   K+F E+P  + D + ++V+I  Y  +G  + 
Sbjct: 268 LKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMP--ELDGISYNVVITSYAWNGQFKE 325

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL----------FNFMLENHQTC 550
           +  LF+++  +     +  F + L   +    L  G  +          F   +EN    
Sbjct: 326 SFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVEN---- 381

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
                   +VD+  +     EA  +   +  K T   W A++ A V  G  E G
Sbjct: 382 -------ALVDMYAKCNGDKEAQKIFDNIACKST-VPWTAMISAYVQKGKHEEG 427


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 217/660 (32%), Positives = 342/660 (51%), Gaps = 9/660 (1%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRI 65
           P  +     L     AT  I G +Q+HA  +  G      + SSL+  Y   G + +  +
Sbjct: 198 PTRSTFASMLSAAANATAFIEG-RQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAIL 256

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD   E++  ++N ++    +N    ++++MFL M RLG    D +TY  V+ AC  L 
Sbjct: 257 VFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLG-LEADEFTYVSVLGACAHLD 315

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
              LG  +    +    D   FV N  + M+  FG +  A+ +F+ +     VSWN L+ 
Sbjct: 316 SHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLV 375

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           G   N   +EA+ +   M   GV PD  S  +V+ AC  ++  E G+ IH L     +  
Sbjct: 376 GLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICS 435

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           N A  ++L+D Y K G V   R V  ++    +V    +I G   N     A+ LFQ + 
Sbjct: 436 NHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVL 495

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN-LECEVIVETALIDMYAKCNLV 364
            +G++P+S T  S+LS C+ L     G+ +H +T+K   L  +  V  +L+  Y K  + 
Sbjct: 496 RDGLKPSSFTFSSILSGCTGLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMP 555

Query: 365 KLSFQVFARTSKKKT-VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           + + ++       K  V W AI++G   NG + +++  F +M    V P++ T  S+L A
Sbjct: 556 EDANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKA 615

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
            + +  L     IH  +I+ GF S    ++ +ID+YSKCG + S+ + F E+  K +DI 
Sbjct: 616 CSEMTALSDGKEIHGLIIKSGFGSYKTATSAIIDMYSKCGDIISSFEAFKELKSK-QDIT 674

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
           +W+ +I G+  +G+ + A+ LF++M  S ++ +EVTF   L AC+H GL+ EG   F+ M
Sbjct: 675 LWNSMILGFAKNGYADEALLLFQKMQDSQIKSDEVTFLGVLIACAHAGLISEGRHYFDSM 734

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
            + +    R DHY C +DLLGR G L EA ++I  +P +P   +W   L AC +H + E 
Sbjct: 735 SKVYGIMPRVDHYACFIDLLGRGGHLQEAQEVINELPFRPDGVIWATYLAACRMHKDEER 794

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           GE+AAK L ELEP+N   YVLLS +Y+A   W +A+  R+ M EKG  K P  S I V N
Sbjct: 795 GEIAAKELVELEPQNSSTYVLLSNMYAAAGNWVEAKMAREAMREKGATKFPGCSWITVGN 854



 Score =  249 bits (637), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 152/544 (27%), Positives = 286/544 (52%), Gaps = 14/544 (2%)

Query: 56  AYGHVSNVRILFDEMSERSSFL-YNTVMKMYAQ-NGASHDSLKMFLGMLRLGEYNPDNYT 113
           A G + + R L   M   SS + +N V+  YAQ +G  H+   ++  M   G + P   T
Sbjct: 144 ALGRLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLW-PTRST 202

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           +  ++ A  +      G  +H   +  G D + FVG+ LI +Y   G +  A  VFD   
Sbjct: 203 FASMLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSG 262

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
           E +VV WN +++G  +N Y  EA+ +F +M + G+E D  + VSVL AC +L    +GR 
Sbjct: 263 EKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQ 322

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           +  +     +  ++   NA +DM+ K G++++A+ +F+ ++ +D V+W +++ G   N +
Sbjct: 323 VQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEE 382

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              A+ + + M  +GV P+ ++  ++++ACS++   + G+ +H   +K ++     V ++
Sbjct: 383 DEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSS 442

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           LID Y+K   V+   +V A+      VP N ++AG V N    +A++LF+Q+L + ++P+
Sbjct: 443 LIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPS 502

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS-VVEVSTGLIDIYSKCGSLESAHKIF 472
             T +S+L     L        +HCY ++ GFL+    V   L+  Y K    E A+K+ 
Sbjct: 503 SFTFSSILSGCTGLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANKLL 562

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
            E+P   K++V W+ I++GY  +G+   ++  F  M    V P+EVTF S L ACS    
Sbjct: 563 IEMP-DHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTA 621

Query: 533 LDEGLDLFNFMLE----NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           L +G ++   +++    +++T + A     I+D+  + G +  +++  + +  K    +W
Sbjct: 622 LSDGKEIHGLIIKSGFGSYKTATSA-----IIDMYSKCGDIISSFEAFKELKSKQDITLW 676

Query: 589 GALL 592
            +++
Sbjct: 677 NSMI 680



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 140/528 (26%), Positives = 230/528 (43%), Gaps = 74/528 (14%)

Query: 105 GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA 164
           G   PD +     + AC+ L     G   H      G     F    L+ MY   G V  
Sbjct: 25  GGVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGD 84

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
           AR+VF  +     V W ++ISGY +    +EA+ +F  M K G  PD  + V+V+ A   
Sbjct: 85  ARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCA--- 141

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM-SERDVVTWTS 283
                       L A GRL                     +AR +  RM +    V W +
Sbjct: 142 ------------LTALGRL--------------------EDARTLLHRMPAPSSTVAWNA 169

Query: 284 MINGYALNGDVRN-ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           +I+GYA    + +   GL++ M+  G+ P   T  S+LSA ++      GR +HA  ++ 
Sbjct: 170 VISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAVRH 229

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
            L+  V V ++LI++YAKC  +  +  VF  + +K  V WNA+L G V N    +A+++F
Sbjct: 230 GLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMF 289

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
             M    +E ++ T  S+L A A L        + C  I+    + + V+   +D++SK 
Sbjct: 290 LYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKF 349

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G+++ A  +F+ I    KD V W+ ++ G   +   E A+ + K M   GV P+EV+F +
Sbjct: 350 GAIDDAKTLFNLITY--KDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFAT 407

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG--------------- 567
            ++ACS+    + G  +    ++ H  CS     + ++D   + G               
Sbjct: 408 VINACSNIRATETGKQIHCLAMK-HSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDAS 466

Query: 568 ----------------RLDEAYDLIRTM---PLKPTHAVWGALLGACV 596
                           R DEA DL + +    LKP+   + ++L  C 
Sbjct: 467 SIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCT 514


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 209/635 (32%), Positives = 341/635 (53%), Gaps = 13/635 (2%)

Query: 35  LHAFIITSG-PLFTHLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           +H  +I  G  L   + ++LV  YG    V     +FD M E +   +N+++  +++NG 
Sbjct: 168 IHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGF 227

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
           S DS  + + ML      PD  T   ++  C       +G+ +HG  +  G   +  V N
Sbjct: 228 SRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNN 287

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE- 209
            ++ MY   G +  A+  F      +VVSWNT+IS +       EA  +   M   G E 
Sbjct: 288 AMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEM 347

Query: 210 -PDCASVVSVLPACGYLKEIEMGRMIHEL--VAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
             +  ++++VLPAC  L ++++ R + EL   +     +++   NA +  Y KCG++N A
Sbjct: 348 KANEVTILNVLPAC--LDKLQL-RSLKELHGYSFRHCFQHVELSNAFILAYAKCGALNSA 404

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
             VF  + ++ V +W ++I G+A NGD R AL L   M + G +P+  TI SLL AC+ L
Sbjct: 405 EKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHL 464

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             L+ G+ +H + ++  LE +  V T+L+  Y  C     +  +F R   K  V WNA++
Sbjct: 465 KSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMI 524

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           +G   NGL  +++ LFR+ L E ++ ++  + S+  A + L+ L+     H Y+++    
Sbjct: 525 SGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQT 584

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
               V   +ID+Y+K G ++ + K+F    +KDK++  W+ II  +G+HGHG+ A+ L++
Sbjct: 585 EDAFVGCSIIDMYAKSGCIKESRKVFD--GLKDKNVASWNAIIVAHGIHGHGKEAIELYE 642

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
            M + G  P+  T+   L AC H GL++EGL  F  M   +    + +HY C++D+L RA
Sbjct: 643 RMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARA 702

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           GRLD+A  L+  MP +  + +W +LL +C   G +E+GE  AK L ELEP+   NYVLLS
Sbjct: 703 GRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLS 762

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            LY+ + +W     VR +M E GL+K    S IEV
Sbjct: 763 NLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEV 797



 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 198/596 (33%), Positives = 324/596 (54%), Gaps = 25/596 (4%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLR------SSLVRAY---GHVSNVRILFDE 69
           L+Q     K I   ++LH F+  S    TH R      + L++ Y   G   + R++FD 
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDS----THYRNDYVLNTRLIKMYAMCGSPLDSRLVFDN 104

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           M  ++   +N ++  Y +NG   D +K+F+ ++   ++ PDN+T+P VIKAC  +   +L
Sbjct: 105 METKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRL 164

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  +HG V+  G  +D FVGN L+ MY   G V  A KVFD M E ++VSWN++I  + +
Sbjct: 165 GEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSE 224

Query: 190 NAYAKEALVVFDWML-KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           N +++++  +   ML + G+ PD  +VV++LP C    E+++G  IH L     L + + 
Sbjct: 225 NGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVM 284

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             NA+V MY KCG +NEA++ F + + ++VV+W +MI+ ++L GDV  A  L Q MQ +G
Sbjct: 285 VNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQG 344

Query: 309 --VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
             ++ N +TI ++L AC     L+  + LH ++ +   +  V +  A I  YAKC  +  
Sbjct: 345 EEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQ-HVELSNAFILAYAKCGALNS 403

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           + +VF     K    WNA++ G   NG  RKA+ L  QM     +P+  T++SLL A A 
Sbjct: 404 AEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAH 463

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           L  LQ    IH Y++R G  +   V T L+  Y  CG   SA  +F    +KDK++V W+
Sbjct: 464 LKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDR--MKDKNLVSWN 521

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            +I+GY  +G    +++LF++ +  G+Q +E+   S   ACS    L  G +   ++L+ 
Sbjct: 522 AMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKA 581

Query: 547 HQTCSRADHYT--CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
            QT    D +    I+D+  ++G + E+  +   +  K   A W A++ A  IHG+
Sbjct: 582 LQT---EDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNV-ASWNAIIVAHGIHGH 633



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 119/228 (52%), Gaps = 5/228 (2%)

Query: 315 TIGSLLSACSSLYYLKRGRSLHAW-TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            IG LL AC +   ++ GR LH + +   +   + ++ T LI MYA C     S  VF  
Sbjct: 45  AIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDN 104

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQ 432
              K  + WNA+++G   NGL    V++F  ++ +   +P++ T  S++ A   + D++ 
Sbjct: 105 METKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRL 164

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              IH  +I+ G +  V V   L+ +Y KCG+++ A K+F  +P  + ++V W+ +I  +
Sbjct: 165 GEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMP--ETNLVSWNSMICAF 222

Query: 493 GMHGHGETAVSLFKEMV-QSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
             +G    +  L  EM+ + G+ P+ VT  + L  C+  G +D G+ +
Sbjct: 223 SENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGI 270


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 209/619 (33%), Positives = 332/619 (53%), Gaps = 10/619 (1%)

Query: 52  SLVRAYGHVSNVRILFDEM-SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPD 110
           SL    G       +F  M S R    ++ ++  +A N     +L  F+ M+  G Y P+
Sbjct: 109 SLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYY-PN 167

Query: 111 NYTYPIVIKACTDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMN-FGEVKAARKV 168
            Y +    +AC+   +  +G ++ G V+ TG+   D  VG  LI M++   G++ +A KV
Sbjct: 168 EYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKV 227

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           F+ M E + V+W  +I+   +  YA EA+ +F  M+ SG EPD  ++  V+ AC  ++ +
Sbjct: 228 FEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELL 287

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKC---GSVNEARLVFDRMSERDVVTWTSMI 285
            +G+ +H       L  +      L++MY KC   GS+  AR +FD++ + +V +WT+MI
Sbjct: 288 LLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMI 347

Query: 286 NGYALNGDV-RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
            GY   G     AL LF+ M    V PN  T  S L AC++L  L+ G  +    +K   
Sbjct: 348 TGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGF 407

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
                V  +LI MYA+   +  + + F    +K  + +N ++     N  + +A+ELF +
Sbjct: 408 SSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNE 467

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           +  + +  +  T  SLL   A +  + +   IH  +I+ G      V   LI +YS+CG+
Sbjct: 468 IEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGN 527

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           +ESA ++F ++  +D++++ W+ II G+  HG    A+ LF +M++ GV+PN VT+ + L
Sbjct: 528 IESAFQVFEDM--EDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVL 585

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            ACSH GL++EG   F  M   H    R +HY C+VD+LGR+G L EA   I +MP K  
Sbjct: 586 SACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKAD 645

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
             VW   LGAC +HGN+ELG+ AAK + E EP +P  Y+LLS LY++  +W +  N+R  
Sbjct: 646 ALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKA 705

Query: 645 MDEKGLRKAPAHSLIEVRN 663
           M EK L K    S +EV N
Sbjct: 706 MKEKNLIKEAGCSWVEVEN 724



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 140/524 (26%), Positives = 254/524 (48%), Gaps = 22/524 (4%)

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NG  H ++     M+  G + PD  TY + +K C       +G  +H ++  +   +D+ 
Sbjct: 44  NGRLHKAISTLEHMVHQGSH-PDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMW-EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
             N LI++Y   G+ + A  +F  M     ++SW+ ++S +  N     AL+ F  M+++
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG-GRLGKNIAAWNALVDMYVKC-GSVN 264
           G  P+     +   AC   + + +G  I   V   G L  ++     L+DM+VK  G + 
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLV 222

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
            A  VF++M ER+ VTWT MI      G    A+ LF  M   G  P+  T+  ++SAC+
Sbjct: 223 SAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACA 282

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL---VKLSFQVFARTSKKKTVP 381
           ++  L  G+ LH+  I+  L  +  V   LI+MYAKC++   +  + ++F +        
Sbjct: 283 NMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFS 342

Query: 382 WNAILAGCVHN-GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
           W A++ G V   G   +A++LFR M++  V PN  T +S L A A LA L+    +  + 
Sbjct: 343 WTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHA 402

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           ++ GF SV  V+  LI +Y++ G ++ A K F    + +K+++ ++ +I  Y  + + E 
Sbjct: 403 VKLGFSSVNCVANSLISMYARSGRIDDARKAFD--ILFEKNLISYNTVIDAYAKNLNSEE 460

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE-----NHQTCSRADH 555
           A+ LF E+   G+  +  TF S L   +  G + +G  +   +++     N   C+    
Sbjct: 461 ALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCN---- 516

Query: 556 YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
              ++ +  R G ++ A+ +   M  +   + W +++     HG
Sbjct: 517 --ALISMYSRCGNIESAFQVFEDMEDRNVIS-WTSIITGFAKHG 557


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 209/667 (31%), Positives = 342/667 (51%), Gaps = 8/667 (1%)

Query: 1   MNGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHV 60
           ++ P  ++ P T     +L+QQ    +       +H  +  +  L       LV+  G +
Sbjct: 53  LDSPLTYSSPGTATECRELIQQAKQEQLAQNAYSVHNMLELNSEL-----KQLVKQ-GQL 106

Query: 61  SNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKA 120
              R +FD+M+ R    + T++  Y     S+++L +F  M        D +   + +KA
Sbjct: 107 CKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMISVALKA 166

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
           C        G  LHG  + +G     FV + LI MYM  G+++   +VF  M + +VVSW
Sbjct: 167 CGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSW 226

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
             +I+G     Y  EAL+ F  M  S V  D  +    L A      +  G+ IH     
Sbjct: 227 TAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIK 286

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
               ++    N L  MY KCG  +    +F++M   DVV+WT++I  Y   G+  +A+  
Sbjct: 287 QGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEA 346

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
           F+ M+   V PN  T  +++SAC++L   K G  +H   ++  L   + V  +++ +Y+K
Sbjct: 347 FKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSK 406

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
             L+K +  VF   ++K  + W+ I+A     G A++A +    M  E  +PN+  L+S+
Sbjct: 407 SGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSV 466

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L     +A L+Q   +H +++  G      V + LI +YSKCGS+E A KIF+ + I + 
Sbjct: 467 LSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKIFNGMKINN- 525

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
            I+ W+ +I GY  HG+ + A++LF+++   G++P+ VTF   L ACSH G++D G   F
Sbjct: 526 -IISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMVDLGFYYF 584

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             M   +Q     +HY CI+DLL RAGRL EA  +IR+MP      VW  LL +C +HG+
Sbjct: 585 MLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLLRSCRVHGD 644

Query: 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           V+ G   A+ L  L+P + G ++ L+ +Y+A  RWK+A ++R +M  KG+ K    S + 
Sbjct: 645 VDRGRWTAEQLLRLDPNSAGTHIALANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVN 704

Query: 661 VRNILTA 667
           V + L A
Sbjct: 705 VNDKLNA 711


>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 203/560 (36%), Positives = 315/560 (56%), Gaps = 17/560 (3%)

Query: 116 IVIKACTDLAWRKLGIALHGRVL-----ITGFDMDTF-----VGNCLIAMYMNFGEVKAA 165
            ++  C    +  LG +LH  ++     + G + D       V N L++MY   GE++ A
Sbjct: 49  FLLSLCGREGYLHLGSSLHASIIKNFGFLDGNNRDNLRNVIVVWNSLLSMYSRCGELRDA 108

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV-EPDCASVVSVLPACGY 224
            KVFD M     +SWN+ ISG   N   +    VF  + +SG+ + D A++ +VL AC  
Sbjct: 109 TKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDK 168

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
            +   + +MIH LV      + I   NAL+  Y +CG  +  R VFD MSE++VVTWT++
Sbjct: 169 PEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAV 228

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           I+G +       +L LF  M+   V PNSLT  S L ACS L  ++ GR +H    K  +
Sbjct: 229 ISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGV 288

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
             ++ +E+AL+DMY+KC  ++ ++++F    +   V    IL G   NG   +++++F +
Sbjct: 289 HFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVK 348

Query: 405 MLVE--VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
           M+    V++PN   ++++L  + I   L     IH  +I+  F S   V+ GLI++YSKC
Sbjct: 349 MVKNGVVIDPN--MISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKC 406

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G L+ + KIF  +P   ++ V W+ +IA +  HG+G  A+ L++EM   GV P +VTF S
Sbjct: 407 GDLDDSIKIFCWMP--QRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLS 464

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
            LHAC+H GL+++G+     M +++    R +HY C+VD++GRAG L+EA   I  +P K
Sbjct: 465 LLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEK 524

Query: 583 PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642
           P   VW ALLGAC IHGN E+G+ AA  LF   PE+P  Y+LL+ +YS+  +WK+     
Sbjct: 525 PGILVWQALLGACSIHGNSEMGKYAANQLFLQAPESPAPYILLANIYSSEGKWKERARTI 584

Query: 643 DVMDEKGLRKAPAHSLIEVR 662
             M + G+ K    S IE+ 
Sbjct: 585 KKMKDMGVTKETGISWIEIE 604



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/449 (28%), Positives = 223/449 (49%), Gaps = 2/449 (0%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           S+    G + +   +FD M  + +  +N+ +     NG      ++F  +   G Y  D 
Sbjct: 97  SMYSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQ 156

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T   V+ AC    +  +   +H  V + G++ +  VGN LI  Y   G   + R+VFD 
Sbjct: 157 ATLTTVLTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDE 216

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M E +VV+W  +ISG  +  + +E+L +F  M    V+P+  + +S L AC  L+ I  G
Sbjct: 217 MSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREG 276

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           R IH LV    +  ++   +AL+DMY KCGS+ +A  +F+   E D V+ T ++ G A N
Sbjct: 277 RQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQN 336

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G    ++ +F  M   GV  +   I ++L        L  G+ +H+  IK++      V 
Sbjct: 337 GFEEESIQVFVKMVKNGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVN 396

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
             LI+MY+KC  +  S ++F    ++ +V WN+++A    +G   +A++L+ +M +E V 
Sbjct: 397 NGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVW 456

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           P D T  SLL A A +  +++ M     + + YG    +E    ++D+  + G L  A K
Sbjct: 457 PTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKK 516

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
               +P K   I+VW  ++    +HG+ E
Sbjct: 517 FIERLPEK-PGILVWQALLGACSIHGNSE 544



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 197/386 (51%), Gaps = 7/386 (1%)

Query: 32  TKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           +K +H+ +   G      + ++L+ +Y   G  S+ R +FDEMSE++   +  V+   +Q
Sbjct: 175 SKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQ 234

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
                +SLK+F G +R G  +P++ TY   + AC+ L   + G  +HG V   G   D  
Sbjct: 235 GQFYEESLKLF-GKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLC 293

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           + + L+ MY   G ++ A K+F++  E   VS   ++ G  +N + +E++ VF  M+K+G
Sbjct: 294 IESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNG 353

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           V  D   + ++L   G    + +G+ IH L+     G N    N L++MY KCG ++++ 
Sbjct: 354 VVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSI 413

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +F  M +R+ V+W SMI  +A +G+   AL L++ M+ EGV P  +T  SLL AC+ + 
Sbjct: 414 KIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVG 473

Query: 328 YLKRGRS-LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV-PWNAI 385
            +++G   L +      +   +     ++DM  +  L+  + +   R  +K  +  W A+
Sbjct: 474 LVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQAL 533

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVE 411
           L  C  +G +        Q+ ++  E
Sbjct: 534 LGACSIHGNSEMGKYAANQLFLQAPE 559



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 135/281 (48%), Gaps = 20/281 (7%)

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ----------NLECEVIVETALIDMYAKC 361
           N + I  LLS C    YL  G SLHA  IK           NL   ++V  +L+ MY++C
Sbjct: 43  NQVDISFLLSLCGREGYLHLGSSLHASIIKNFGFLDGNNRDNLRNVIVVWNSLLSMYSRC 102

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE-VVEPNDATLNSL 420
             ++ + +VF     K T+ WN+ ++G + NG       +F+Q+    + + + ATL ++
Sbjct: 103 GELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTV 162

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L A         +  IH  +  YG+   + V   LI  Y +CG   S  ++F E  + +K
Sbjct: 163 LTACDKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDE--MSEK 220

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
           ++V W+ +I+G       E ++ LF +M    V PN +T+ S+L ACS    + EG  + 
Sbjct: 221 NVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIH 280

Query: 541 NFMLE---NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578
             + +   +   C      + ++D+  + G L++A+ +  +
Sbjct: 281 GLVWKLGVHFDLCIE----SALMDMYSKCGSLEDAWKIFES 317


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 205/532 (38%), Positives = 295/532 (55%), Gaps = 41/532 (7%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           LH  +++ G     F+   L+ +Y N G+V  +R  FD + +  V +WN++IS Y  N +
Sbjct: 38  LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 97

Query: 193 AKEALVVF-DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
             EA+  F   +L S + PD  +   VL ACG L +   GR IH          N+    
Sbjct: 98  FHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAA 154

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           +L+ MY + G    AR +FD M  RD+ +W +MI+G   NG+   AL +   M+ EG++ 
Sbjct: 155 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 214

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           N +T+ S+L                                  +DMYAK  L+  + +VF
Sbjct: 215 NFVTVVSILPV-------------------------------FVDMYAKLGLLDSAHKVF 243

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE--PNDATLNSLLPAYAILAD 429
                K  + WN ++ G   NGLA +A+E+++ M+ E  E  PN  T  S+LPAYA +  
Sbjct: 244 EIIPVKDVISWNTLITGYAQNGLASEAIEVYK-MMEECKEIIPNQGTWVSILPAYAHVGA 302

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           LQQ M IH  +I+      V V+T LID+Y KCG L  A  +F ++P   +  V W+ II
Sbjct: 303 LQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP--QESSVTWNAII 360

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           + +G+HGH E  + LF EM+  GV+P+ VTF S L ACSH G ++EG   F  M E +  
Sbjct: 361 SCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGI 419

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
                HY C+VDLLGRAG L+ AYD I+ MPL+P  ++WGALLGAC IHGN+ELG+ A+ 
Sbjct: 420 KPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASD 479

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            LFE++ +N G YVLLS +Y+ V +W+  + VR +  E+GL+K P  S IEV
Sbjct: 480 RLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEV 531



 Score =  224 bits (572), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 144/472 (30%), Positives = 240/472 (50%), Gaps = 40/472 (8%)

Query: 33  KQLHAFIITSGPLFT-HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           K LHA ++ +G + +  + + LV  Y   G VS  R  FD++ ++  + +N+++  Y  N
Sbjct: 36  KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHN 95

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G  H+++  F  +L + E  PD YT+P V+KAC  L     G  +H      GF  + FV
Sbjct: 96  GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLV---DGRKIHCWAFKLGFQWNVFV 152

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
              LI MY  FG    AR +FD M    + SWN +ISG  +N  A +AL V D M   G+
Sbjct: 153 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 212

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           + +  +VVS+LP                                 VDMY K G ++ A  
Sbjct: 213 KMNFVTVVSILP-------------------------------VFVDMYAKLGLLDSAHK 241

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM-QFEGVRPNSLTIGSLLSACSSLY 327
           VF+ +  +DV++W ++I GYA NG    A+ ++++M + + + PN  T  S+L A + + 
Sbjct: 242 VFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 301

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L++G  +H   IK NL  +V V T LID+Y KC  +  +  +F +  ++ +V WNAI++
Sbjct: 302 ALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIIS 361

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
               +G A K ++LF +ML E V+P+  T  SLL A +    +++       +  YG   
Sbjct: 362 CHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKP 421

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            ++    ++D+  + G LE A+    ++P++  D  +W  ++    +HG+ E
Sbjct: 422 SLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQ-PDASIWGALLGACRIHGNIE 472



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 139/274 (50%), Gaps = 7/274 (2%)

Query: 29  IAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           + G K     +++  P+F  + + L    G + +   +F+ +  +    +NT++  YAQN
Sbjct: 209 LEGIKMNFVTVVSILPVFVDMYAKL----GLLDSAHKVFEIIPVKDVISWNTLITGYAQN 264

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G + ++++++  M    E  P+  T+  ++ A   +   + G+ +HGRV+ T   +D FV
Sbjct: 265 GLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFV 324

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
             CLI +Y   G +  A  +F  + + S V+WN +IS +  + +A++ L +F  ML  GV
Sbjct: 325 ATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGV 384

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA-R 267
           +PD  + VS+L AC +   +E G+    L+    +  ++  +  +VD+  + G +  A  
Sbjct: 385 KPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYD 444

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
            + D   + D   W +++    ++G++   LG F
Sbjct: 445 FIKDMPLQPDASIWGALLGACRIHGNIE--LGKF 476


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 193/510 (37%), Positives = 288/510 (56%), Gaps = 26/510 (5%)

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           ++W  +I  Y  +   + +L  F+ +   G+ PD     S+L A    K   + + +H  
Sbjct: 42  LAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAA 101

Query: 238 VAGGRLGKNIAAW--NALVDMYVK----------------------CGSVNEARLVFDRM 273
           V   RLG +   +  NAL++MY K                         ++  R +FDRM
Sbjct: 102 VI--RLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRM 159

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
             RDVV+W ++I G A NG    AL + + M  E +RP+S T+ S+L   +    + +G+
Sbjct: 160 PVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGK 219

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            +H + I+   + +V + ++LIDMYAKC  V+LS   F   S +  + WN+I+AGCV NG
Sbjct: 220 EIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNG 279

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
              + +  FR+ML E V+P   + +S++PA A L  L     +H Y+IR GF     +++
Sbjct: 280 RFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIAS 339

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            L+D+Y+KCG+++ A  IF++I + D+D+V W+ II G  MHGH   AVSLF+EM+  GV
Sbjct: 340 SLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGV 399

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
           +P  V F + L ACSH GL+DEG   FN M  +       +HY  + DLLGRAGRL+EAY
Sbjct: 400 KPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAY 459

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633
           D I  M  +PT +VW  LL AC  H N+EL E     +  ++P N G +V++S +YSA +
Sbjct: 460 DFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQ 519

Query: 634 RWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           RW+DA  +R  M + GL+K PA S IEV N
Sbjct: 520 RWRDAAKLRVRMRKTGLKKTPACSWIEVGN 549



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 133/452 (29%), Positives = 217/452 (48%), Gaps = 27/452 (5%)

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
           S  +  ++K YA +G    SL  F  +LR    +PD + +P +++A T      L  +LH
Sbjct: 41  SLAWICIIKCYASHGLLRHSLASF-NLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLH 99

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFG----------------------EVKAARKVFDAM 172
             V+  GF  D +  N L+ MY  F                       ++ + RK+FD M
Sbjct: 100 AAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRM 159

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
               VVSWNT+I+G  +N   +EAL +   M K  + PD  ++ S+LP       +  G+
Sbjct: 160 PVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGK 219

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            IH         K++   ++L+DMY KC  V  +   F  +S RD ++W S+I G   NG
Sbjct: 220 EIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNG 279

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
                LG F+ M  E V+P  ++  S++ AC+ L  L  G+ LHA+ I+   +    + +
Sbjct: 280 RFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIAS 339

Query: 353 ALIDMYAKCNLVKLSFQVFARTS--KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
           +L+DMYAKC  +K++  +F +     +  V W AI+ GC  +G A  AV LF +MLV+ V
Sbjct: 340 SLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGV 399

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAH 469
           +P      ++L A +    + +       + R +G    +E    + D+  + G LE A+
Sbjct: 400 KPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAY 459

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
              S +  ++    VWS ++A    H + E A
Sbjct: 460 DFISNMG-EEPTGSVWSTLLAACRAHKNIELA 490



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 201/387 (51%), Gaps = 31/387 (8%)

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN--PDNYTYPIV 117
           + +VR LFD M  R    +NTV+   AQNG   ++L M   M   G+ N  PD++T   +
Sbjct: 149 IDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEM---GKENLRPDSFTLSSI 205

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +   T+ A    G  +HG  +  GFD D F+G+ LI MY    +V+ +   F  +     
Sbjct: 206 LPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDA 265

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           +SWN++I+G  +N    + L  F  MLK  V+P   S  SV+PAC +L  + +G+ +H  
Sbjct: 266 ISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAY 325

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR--MSERDVVTWTSMINGYALNGDVR 295
           +       N    ++L+DMY KCG++  AR +F++  M +RD+V+WT++I G A++G   
Sbjct: 326 IIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHAL 385

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE---- 351
           +A+ LF+ M  +GV+P  +   ++L+ACS    +  G     W    +++ +  V     
Sbjct: 386 DAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEG-----WKYFNSMQRDFGVAPGLE 440

Query: 352 --TALIDMYAKCNLVKLSFQVFARTSKKKTVP-WNAILAGCVHNGLARKAVELFRQMLVE 408
              A+ D+  +   ++ ++   +   ++ T   W+ +LA C     A K +EL  +++ +
Sbjct: 441 HYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAAC----RAHKNIELAEKVVNK 496

Query: 409 V--VEPNDATLNSLLPAYAILADLQQA 433
           +  V+P +      + A+ I++++  A
Sbjct: 497 ILLVDPGN------MGAHVIMSNIYSA 517


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 197/608 (32%), Positives = 328/608 (53%), Gaps = 6/608 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN-PDNYTYPI 116
           G VS+ R LFD M +R+   +  +M  YA+N    ++ K+F  M R      PD+ T+  
Sbjct: 93  GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTT 152

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTF--VGNCLIAMYMNFGEVKAARKVFDAMWE 174
           ++  C D   +     +H   +  GFD + F  V N L+  Y     +  A  +F+ + E
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE 212

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
              V++NTLI+GY K+    E++ +F  M +SG +P   +   VL A   L +  +G+ +
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQL 272

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H L       ++ +  N ++D Y K   V E R++FD M E D V++  +I+ Y+     
Sbjct: 273 HALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQY 332

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             +L  F+ MQ  G    +    ++LS  ++L  L+ GR LH   +    +  + V  +L
Sbjct: 333 EASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSL 392

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           +DMYAKC + + +  +F    ++ TV W A+++G V  GL    ++LF +M    +  + 
Sbjct: 393 VDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQ 452

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
           +T  ++L A A  A L     +H ++IR G L  V   +GL+D+Y+KCGS++ A ++F E
Sbjct: 453 STFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEE 512

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
           +P  D++ V W+ +I+ +  +G GE A+  F +M++SG+QP+ V+    L ACSH G ++
Sbjct: 513 MP--DRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVE 570

Query: 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           +G + F  M   +    +  HY C++DLLGR GR  EA  L+  MP +P   +W ++L A
Sbjct: 571 QGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNA 630

Query: 595 CVIHGNVELGEVAAKWLFELEP-ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKA 653
           C IH N  L E AA+ LF +E   +   YV +S +Y+A   W+   +V+  M E+G++K 
Sbjct: 631 CRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKV 690

Query: 654 PAHSLIEV 661
           PA+S +EV
Sbjct: 691 PAYSWVEV 698



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 122/483 (25%), Positives = 226/483 (46%), Gaps = 16/483 (3%)

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           +T   N +I+ ++  G+V +AR +FDAM + +VV+W  L+  Y +N++  EA  +F  M 
Sbjct: 78  NTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMC 137

Query: 205 KSG--VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN--IAAWNALVDMYVKC 260
           +S     PD  +  ++LP C           +H          N  +   N L+  Y + 
Sbjct: 138 RSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEV 197

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
             ++ A ++F+ + E+D VT+ ++I GY  +G    ++ LF  M+  G +P+  T   +L
Sbjct: 198 RRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVL 257

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
            A   L+    G+ LHA ++      +  V   ++D Y+K + V  +  +F    +   V
Sbjct: 258 KAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFV 317

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            +N +++          ++  FR+M     +  +    ++L   A L+ LQ    +HC  
Sbjct: 318 SYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQA 377

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY---GMHGH 497
           +     S++ V   L+D+Y+KC   E A  IF  +P   +  V W+ +I+GY   G+HG 
Sbjct: 378 LLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLP--QRTTVSWTALISGYVQKGLHGA 435

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
           G   + LF +M  S ++ ++ TF + L A +    L  G  L  F++ +          +
Sbjct: 436 G---LKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRS-GNLENVFSGS 491

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE--LGEVAAKWLFELE 615
            +VD+  + G + +A  +   MP +     W AL+ A   +G+ E  +G  A      L+
Sbjct: 492 GLVDMYAKCGSIKDAVQVFEEMPDR-NAVSWNALISAHADNGDGEAAIGAFAKMIESGLQ 550

Query: 616 PEN 618
           P++
Sbjct: 551 PDS 553



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 159/306 (51%), Gaps = 9/306 (2%)

Query: 33  KQLHAFIITSGPLFTHLRS------SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYA 86
           +QLHA  +T+G  F+   S           +  V   R+LFDEM E     YN V+  Y+
Sbjct: 270 QQLHALSVTTG--FSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYS 327

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           Q      SL  F  M  +G ++  N+ +  ++    +L+  ++G  LH + L+   D   
Sbjct: 328 QADQYEASLHFFREMQCMG-FDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSIL 386

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
            VGN L+ MY      + A  +F ++ + + VSW  LISGY +       L +F  M  S
Sbjct: 387 HVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGS 446

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
            +  D ++  +VL A      + +G+ +H  +      +N+ + + LVDMY KCGS+ +A
Sbjct: 447 NLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDA 506

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
             VF+ M +R+ V+W ++I+ +A NGD   A+G F  M   G++P+S++I  +L+ACS  
Sbjct: 507 VQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHC 566

Query: 327 YYLKRG 332
            ++++G
Sbjct: 567 GFVEQG 572



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 161/363 (44%), Gaps = 16/363 (4%)

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
           KN  + N ++  +VK G V+ AR +FD M +R VVTWT ++  YA N     A  LF+ M
Sbjct: 77  KNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQM 136

Query: 305 --QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE--VIVETALIDMYAK 360
                   P+ +T  +LL  C+          +HA+ +K   +    + V   L+  Y +
Sbjct: 137 CRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCE 196

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
              + L+  +F    +K +V +N ++ G   +GL  +++ LF +M     +P+D T + +
Sbjct: 197 VRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGV 256

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L A   L D      +H   +  GF     V   ++D YSK   +     +F E+P  + 
Sbjct: 257 LKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMP--EL 314

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
           D V ++V+I+ Y      E ++  F+EM   G       F + L   ++   L  G  L 
Sbjct: 315 DFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLH 374

Query: 541 NFMLENHQTCSRADHY----TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
              L      + AD        +VD+  +    +EA  + +++P + T   W AL+   V
Sbjct: 375 CQAL-----LATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTT-VSWTALISGYV 428

Query: 597 IHG 599
             G
Sbjct: 429 QKG 431



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 116/305 (38%), Gaps = 56/305 (18%)

Query: 33  KQLHAFIITSGPLFTHLR-SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           KQLHAFII SG L      S LV  Y   G + +   +F+EM +R++  +N ++  +A N
Sbjct: 472 KQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADN 531

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA-LHGRVLITGFDMDTF 147
           G    ++  F  M+  G   PD+ +   V+ AC+   + + G         I G      
Sbjct: 532 GDGEAAIGAFAKMIESG-LQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKK 590

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
              C++ +    G    A K+ D M                                   
Sbjct: 591 HYACMLDLLGRNGRFAEAEKLMDEM----------------------------------P 616

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
            EPD     SVL AC   K   +     E +      ++ AA+ ++ ++Y   G   + R
Sbjct: 617 FEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVR 676

Query: 268 LVFDRMSERDV-----VTWTSMINGYAL---------NGD--VRNALGLFQLMQFEGVRP 311
            V   M ER +      +W  + +   +         NGD  VR    L   ++ EG +P
Sbjct: 677 DVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKP 736

Query: 312 NSLTI 316
           ++ ++
Sbjct: 737 DTSSV 741


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 214/635 (33%), Positives = 333/635 (52%), Gaps = 10/635 (1%)

Query: 36  HAFIITSGPLFT-HLRSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGAS 91
           H   I SG   + +  ++++  Y     +RI   +F E S+R +  +NT++  +   G  
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81

Query: 92  HDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNC 151
             +L+    M R G +  D Y++  ++K    + + ++G  +H  ++  G++ + F G+ 
Sbjct: 82  ETALEFLKSMKRYG-FAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSA 140

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           L+ MY     V+ A +VF ++   + V+WN LISGY +      A  + D M   GVE D
Sbjct: 141 LLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEID 200

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFD 271
             +   +L         ++   +H  +    L  +    NA++  Y +CGS+ +A  VFD
Sbjct: 201 DGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFD 260

Query: 272 RMSE-RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
              E RD+VTW SM+  Y +N     A  LF  MQ  G  P+  T  S++SA     +  
Sbjct: 261 GAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQG 320

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL--SFQVFARTSKKKTVPWNAILAG 388
           +G+SLH   IK+ LE  V +  +LI MY K +   +  +  +F     K  V WN+IL G
Sbjct: 321 QGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTG 380

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
              +GL+  A++ F  M  + V  +    +++L + + LA LQ    +H  +++ GF   
Sbjct: 381 FSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPN 440

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             V++ LI +YSKCG +E A K F   P KD  I  W+ +I GY  HG G+ A+ LF  M
Sbjct: 441 GFVASSLIFMYSKCGVIEDARKSFDATP-KDSSIA-WNSLIFGYAQHGRGKIALDLFFLM 498

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
               V+ + +TF + L ACSH GL++EG      M  ++    R +HY C++DLLGRAGR
Sbjct: 499 KDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGR 558

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           LDEA  LI  MP +P   VW  LLGAC   G++EL    A  L ELEPE    YVLLS +
Sbjct: 559 LDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSM 618

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +  +RRW +  +++ +M E+G++K P  S IEV+N
Sbjct: 619 FGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKN 653



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 2/197 (1%)

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
           SS   L R    H   IK      +     +I  YAKC  ++++ ++F  TS++  V WN
Sbjct: 10  SSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWN 69

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
            ++AG V+ G    A+E  + M       +  +  S+L   A +  ++    +H  +++ 
Sbjct: 70  TMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKM 129

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
           G+   V   + L+D+Y+KC  +E A ++F  I I++   V W+ +I+GY   G   TA  
Sbjct: 130 GYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNS--VTWNALISGYAQVGDRGTAFW 187

Query: 504 LFKEMVQSGVQPNEVTF 520
           L   M   GV+ ++ TF
Sbjct: 188 LLDCMELEGVEIDDGTF 204


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 213/652 (32%), Positives = 336/652 (51%), Gaps = 12/652 (1%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPL---FTHLRSSLVRAYGHVSN---VRILFDE 69
           +I+L+++ A  + +   K +H F+I    +    T + + LV AY   S+    R +FDE
Sbjct: 64  LIELIRESADERCLKKAKSIHGFVIKFQLIEKSLTVMLNQLVIAYSKCSDFGSARQVFDE 123

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           + ++S F +  +M    +NG   D +  F+ +L   +  PD Y     I+AC  +    +
Sbjct: 124 IPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGC-DIVPDEYALSAAIQACIGVDSIVV 182

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  +H +V+  GF   TFV   L+ MY   G +  + KVF+++   + VSWN +ISG+  
Sbjct: 183 GEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVS 242

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N    EA   F  ML   + P+ A  +SV  A G L ++E GR I+ +     +  NI  
Sbjct: 243 NGLYAEAYNSFLRMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHV 302

Query: 250 WNALVDMYVKCGSVNEARLVF-DRMSERDV-VTWTSMINGYALNGDVRNALGLFQLMQFE 307
             AL+DM+ KCG V E+  VF    S   V + W +MI+G+ ++G    A+ LF  M   
Sbjct: 303 GTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQN 362

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
            ++ +  T  S L++ + +  L+  + LH    K      V +  AL+D YAKC  +   
Sbjct: 363 NIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWKSG-SIGVSLCNALMDAYAKCGELDAM 421

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
            ++F    +   + W  ++     +     A+ +F QM     +PN  T + +L + A L
Sbjct: 422 RKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCASL 481

Query: 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
             L+    +H    + GF     V + LID+Y+KCGS+  A K+F  +  KD D++ W+ 
Sbjct: 482 CSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESL--KDPDVISWTA 539

Query: 488 IIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH 547
           +I+GY  HG  + A+ LF++M      PN  TF   L ACSHGGL+DEGL  F+ M E +
Sbjct: 540 MISGYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERY 599

Query: 548 QTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVA 607
                 +HY C+VD+LGR GRL EA+  I  MP++P   VW  LLGAC +HGN++L ++A
Sbjct: 600 GLVPEIEHYACVVDILGRVGRLTEAWKFIMKMPIEPDEKVWSTLLGACRVHGNIQLAKIA 659

Query: 608 AKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           A+ +    P++    VLLS  Y      +   NVR++M  + +RK    S I
Sbjct: 660 AQKVLSYNPDDFAALVLLSNTYREAGNIEGGLNVRNMMKSQAMRKETGMSWI 711



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 147/297 (49%), Gaps = 6/297 (2%)

Query: 6   HHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GHVSN 62
            + + +  +     +   A  +S+   KQLH  I  SG +   L ++L+ AY   G +  
Sbjct: 361 QNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWKSGSIGVSLCNALMDAYAKCGELDA 420

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
           +R LFD   E +   + T++  Y+Q+    D+L +F  M  +G + P+  T+  V+ +C 
Sbjct: 421 MRKLFDTWEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMG-FQPNQVTFSGVLASCA 479

Query: 123 DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT 182
            L   + G  +H     TGF  D  V + LI MY   G V+ A KVF+++ +  V+SW  
Sbjct: 480 SLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISWTA 539

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGG 241
           +ISGY ++  AK+AL +F  M      P+ A+ + +L AC +   ++ G R  H +    
Sbjct: 540 MISGYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSHGGLVDEGLRYFHLMEERY 599

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEA-RLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
            L   I  +  +VD+  + G + EA + +     E D   W++++    ++G+++ A
Sbjct: 600 GLVPEIEHYACVVDILGRVGRLTEAWKFIMKMPIEPDEKVWSTLLGACRVHGNIQLA 656


>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1347

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 204/634 (32%), Positives = 347/634 (54%), Gaps = 11/634 (1%)

Query: 33   KQLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQN 88
            +++H  II SG      + +SL+  YG   N+     +FD M  R    ++T++    +N
Sbjct: 679  RKVHGRIIKSGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLEN 738

Query: 89   GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
                 +L+MF  M+  G   PD  T   V++ C +L   ++  ++HG++    FD D  +
Sbjct: 739  CEVLKALRMFKCMVDDG-VEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDFDETL 797

Query: 149  GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
             N L+ MY   G++ ++ K+F+ + + + VSW  +IS Y +  ++++AL  F  MLKSG+
Sbjct: 798  CNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMLKSGI 857

Query: 209  EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN-ALVDMYVKCGSVNEAR 267
            EP+  ++ S+L +CG    I  G+ +H       L  N  + + ALV++Y +CG + +  
Sbjct: 858  EPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDPNYESLSPALVELYAECGRLGDCE 917

Query: 268  LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
             +   + +R++V W S I+ YA  G V  AL LF+ M    ++P+S T+ S++SAC +  
Sbjct: 918  TILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRIKPDSFTLASIISACENTG 977

Query: 328  YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
             ++ G+ +H   I+ ++  E  V+ ++IDMY+K   V L+  VF +   +  V WN++L 
Sbjct: 978  LVRLGKQIHGHVIRTDVSDE-FVQNSVIDMYSKSGFVNLACTVFDQIKHRSIVTWNSMLC 1036

Query: 388  GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
            G   NG + +A+ LF  M    +E N  T  +++ A + +  L++   +H  LI  G   
Sbjct: 1037 GFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSIGSLEKGRWVHHKLIVCGIKD 1096

Query: 448  VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            +    T LID+Y+KCG L +A  +F    + ++ IV WS +I  YGMHG   +A+S F +
Sbjct: 1097 LF-TDTALIDMYAKCGDLNTAETVFR--AMSNRSIVSWSSMINAYGMHGRIGSAISTFNQ 1153

Query: 508  MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
            MV+SG +PNEV F + L AC H G ++EG   FN M +       ++H+ C +DLL R+G
Sbjct: 1154 MVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLM-KLFGVSPNSEHFACFIDLLSRSG 1212

Query: 568  RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
             L EAY  I+ MP     +VWG+L+  C IH  +++ +     + ++  ++ G Y LLS 
Sbjct: 1213 DLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDIIKAIKNDISDIVTDDTGYYTLLSN 1272

Query: 628  LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            +Y+    W++   +R  M    L+K P +S IE+
Sbjct: 1273 IYAEEGEWEEFRRMRSAMKSLNLKKVPGYSAIEI 1306



 Score =  249 bits (637), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 162/602 (26%), Positives = 310/602 (51%), Gaps = 19/602 (3%)

Query: 10   PKTTHL-VIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLR--SSLVRAY---GHVSNV 63
            P+T +L + + +  + +  S+    QLHA ++ +G L       + L+ +Y   G   + 
Sbjct: 552  PRTKYLKMTQYMPLFRSCSSLRLVSQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSS 611

Query: 64   RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT- 122
            R++F+      SF+Y  ++K          ++ ++  ++   +     + +P V++AC  
Sbjct: 612  RLVFEAFPYPDSFMYGVLIKCNVWCHLLDAAIDLYHRLVS-EKTQISKFVFPSVLRACAG 670

Query: 123  DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT 182
                  +G  +HGR++ +G D D  +   L+ MY   G +  A KVFD M    +V+W+T
Sbjct: 671  SREHLSVGRKVHGRIIKSGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWST 730

Query: 183  LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
            L+S   +N    +AL +F  M+  GVEPD  +++SV+  C  L  + + R +H  +    
Sbjct: 731  LVSSCLENCEVLKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKM 790

Query: 243  LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
               +    N+L+ MY KCG +  +  +F+++++++ V+WT+MI+ Y        AL  F 
Sbjct: 791  FDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFS 850

Query: 303  LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV-IVETALIDMYAKC 361
             M   G+ PN +T+ S+LS+C     ++ G+S+H + I++ L+     +  AL+++YA+C
Sbjct: 851  EMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDPNYESLSPALVELYAEC 910

Query: 362  NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
              +     +      +  V WN+ ++   H G+  +A+ LFRQM+   ++P+  TL S++
Sbjct: 911  GRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRIKPDSFTLASII 970

Query: 422  PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
             A      ++    IH ++IR   +S   V   +ID+YSK G +  A  +F +  IK + 
Sbjct: 971  SACENTGLVRLGKQIHGHVIRTD-VSDEFVQNSVIDMYSKSGFVNLACTVFDQ--IKHRS 1027

Query: 482  IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
            IV W+ ++ G+  +G+   A++LF  M  S ++ N+VTF + + ACS  G L++G  + +
Sbjct: 1028 IVTWNSMLCGFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSIGSLEKGRWVHH 1087

Query: 542  FMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
             ++     C   D +  T ++D+  + G L+ A  + R M  +     W +++ A  +HG
Sbjct: 1088 KLI----VCGIKDLFTDTALIDMYAKCGDLNTAETVFRAMSNRSI-VSWSSMINAYGMHG 1142

Query: 600  NV 601
             +
Sbjct: 1143 RI 1144


>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
          Length = 766

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 209/661 (31%), Positives = 348/661 (52%), Gaps = 18/661 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLF--------THLRSSLVRAYGHVS---NVRILF 67
           LV   +  +S+   +++H  ++ S            T L + L+  YG  +   + R +F
Sbjct: 50  LVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQVF 109

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           DEM  R+   + +V+  + QNG + D+L +F  MLR G    D +     ++ACT+L   
Sbjct: 110 DEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGT-AADQFALGSAVRACTELGDV 168

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
             G  +H   L +    D  V N L+ MY   G V     +F+ + +  ++SW ++I+G+
Sbjct: 169 GTGRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGF 228

Query: 188 FKNAYAKEALVVFDWMLKSGVE-PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
            +  +  EAL VF  M+  G   P+     S   ACG +   E G  IH L    RL ++
Sbjct: 229 AQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRD 288

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           +    +L DMY +  +++ AR+ F R+   D+V+W S++N Y++ G +  AL LF  M+ 
Sbjct: 289 LYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRD 348

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
            G+RP+ +T+  LL AC     L  GR +H++ +K  L+ +V V  +L+ MYA+C+ +  
Sbjct: 349 SGLRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSS 408

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP--NDATLNSLLPAY 424
           +  VF     +  V WN+IL  C  +    + ++LF   L+   EP  +  +LN++L A 
Sbjct: 409 AMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFS--LLNKSEPSLDRISLNNVLSAS 466

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           A L   +    +H Y  + G +    +S  LID Y+KCGSL+ A ++F EI   ++D+  
Sbjct: 467 AELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLF-EIMGNNRDVFS 525

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           WS +I GY   G+ + A+ LF  M   G++PN VTF   L ACS  G ++EG   ++ M 
Sbjct: 526 WSSLIVGYAQFGYAKEALDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIME 585

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
             +      +H +CIVDLL RAG+L EA + I  MP +P   +W  LL A  +H ++E+G
Sbjct: 586 PEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMG 645

Query: 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
           + AA+ +  ++P +   YVLL  +Y+A   W +   ++  M   G++K+P  S ++++  
Sbjct: 646 KRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGE 705

Query: 665 L 665
           L
Sbjct: 706 L 706


>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 195/552 (35%), Positives = 306/552 (55%), Gaps = 10/552 (1%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           T   ++  C+     + G++LH  VL TG   D F+ N ++ MY   G    AR+VFD M
Sbjct: 5   TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
           +E ++VSW+ +ISGY +    + A+ ++  M    + P+     SV+ AC  L  + +G+
Sbjct: 65  FEKNLVSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLGQ 121

Query: 233 MIHELVAGGRLGKNIAAW--NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
            IH      + G    ++  N+L+ MY+KC   ++A  VF    E + V++ ++I G+  
Sbjct: 122 KIHSRSL--KFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVE 179

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           N  +   L  F+LM+ +G+ P+      +L  C++   LKRG  LH  T+K NL+    +
Sbjct: 180 NQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFI 239

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV- 409
              +I MY++ NL++ + + F    +K  + WN ++A C H     K + +F+ M  E  
Sbjct: 240 GNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETN 299

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           V P+D T  S L A A LA +     IH +L+R      + V   L+++Y+KCG +  A+
Sbjct: 300 VRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAY 359

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
            IFS++     ++V W+ IIAG+G HG GE AV LF++M  SG++P+ VTF   L AC+H
Sbjct: 360 DIFSKMV--HHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNH 417

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
            GL+D+G   FN M E +      +H++C++D+LGRAGRL+EA + +R  P      V  
Sbjct: 418 AGLVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLV 477

Query: 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
           +LL A  +HG+V +GE  AKWL +L+P     YVLLS LY++   W      R  +   G
Sbjct: 478 SLLSASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGSG 537

Query: 650 LRKAPAHSLIEV 661
           L+K P HSLIEV
Sbjct: 538 LKKEPGHSLIEV 549



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 142/492 (28%), Positives = 242/492 (49%), Gaps = 15/492 (3%)

Query: 13  THLVIKLVQQYAATKSIAGTKQLHAFIITSGP-----LFTHLRSSLVRAYGHVSNVRILF 67
           T  +  L+   + TK++     LHA ++ +G      +  H+ +   +  GH +  R +F
Sbjct: 3   TETLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKC-GHTTFARQVF 61

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           DEM E++   ++ ++  Y Q G    ++ ++  M  +    P+ Y +  VI AC  L+  
Sbjct: 62  DEMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFLV----PNEYVFASVISACASLSAV 117

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
            LG  +H R L  G++  +FV N LI+MYM   +   A  VF    E + VS+N LI+G+
Sbjct: 118 TLGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGF 177

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            +N   +  L  F  M + G+ PD  + + VL  C   + ++ G  +H       L    
Sbjct: 178 VENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTP 237

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
              N ++ MY +   + EA   F  + E+DV++W ++I   +   D    L +F+ M  E
Sbjct: 238 FIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEE 297

Query: 308 -GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
             VRP+  T  S L+AC+ L  +  G+ +HA  ++  L  ++ V  AL++MYAKC  +  
Sbjct: 298 TNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGY 357

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--Y 424
           ++ +F++      V WN I+AG  ++GL  +AVELF QM    + P+  T   LL A  +
Sbjct: 358 AYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNH 417

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           A L D  Q +  +     YG    +E  + LID+  + G L  A +   + P  +  +V+
Sbjct: 418 AGLVDKGQ-LYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVL 476

Query: 485 WSVIIAGYGMHG 496
            S++ A   +HG
Sbjct: 477 VSLLSASR-LHG 487



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 113/230 (49%), Gaps = 2/230 (0%)

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           F  + E+    +NT++   +        L++F  M       PD++T+   + AC  LA 
Sbjct: 260 FRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLAS 319

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
              G  +H  ++ T    D  VGN L+ MY   G +  A  +F  M  H++VSWNT+I+G
Sbjct: 320 MSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAG 379

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM-IHELVAGGRLGK 245
           +  +   + A+ +F+ M  SG+ PD  + + +L AC +   ++ G++  + +     +  
Sbjct: 380 FGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETYGIAP 439

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSE-RDVVTWTSMINGYALNGDV 294
           +I  ++ L+DM  + G +NEA     +     D V   S+++   L+GDV
Sbjct: 440 DIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVSLLSASRLHGDV 489


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  361 bits (927), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 201/618 (32%), Positives = 339/618 (54%), Gaps = 46/618 (7%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V +   LF  M+  +   +  +M   AQ G+  D+L++F  M R G    D  +   V
Sbjct: 190 GSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSG-VPVDPVSVSSV 248

Query: 118 IKAC-----TDLAWRK---LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           + AC     TD +  +   LG A+H  V+  GF  D  VGN LI MY    E+  A KVF
Sbjct: 249 LGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVF 308

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           +++   ++VSWN LI+G+ +     +A+ V   M ++G EP+  +  ++L +C       
Sbjct: 309 ESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASC------- 361

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
                                       +K   V+ AR +FD++S   V TW ++++GY 
Sbjct: 362 ----------------------------IKARDVHSARAMFDKISRPSVTTWNTLLSGYC 393

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
                ++ + LF+ MQ + V+P+  T+  +LS+CS L  L  GR +H+ +++  L  ++ 
Sbjct: 394 QEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMF 453

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           V + L+DMY+KC  + ++  +F + +++  V WN+I++G   + L ++A + F+QM    
Sbjct: 454 VASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENG 513

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           + P +++  S++ + + L+ +     IH  +++ G+   V V + LID+Y+KCG+++ A 
Sbjct: 514 IMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDAR 573

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
             F  + +K+  IV W+ +I GY  +G G+ AV LF+ M+ +  +P+ VTF + L  CSH
Sbjct: 574 LFFDTMMMKN--IVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSH 631

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
            GL+D+ +  FN M  ++     A+HYTC++D LGRAGR  E   LI  MP K    +W 
Sbjct: 632 SGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWE 691

Query: 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
            LL ACV+H N ELG+ AA+ LF ++P+NP  YVLLS +Y+++ R  DA  VR +M  +G
Sbjct: 692 VLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRG 751

Query: 650 LRKAPAHSLIEVRNILTA 667
           + K   +S I+ ++ + A
Sbjct: 752 VVKGRGYSWIDQKDGVRA 769



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 208/462 (45%), Gaps = 56/462 (12%)

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN-AYAKEALVVFDWMLKSGV 208
           N  ++     G++ AAR +   M   + VSWNT+IS   ++     EA+ ++  M   G+
Sbjct: 78  NAALSAACRAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGL 137

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P   ++ SVL ACG L  +  GR  H +     L  N    NAL+ MY KCGSV +A  
Sbjct: 138 LPTHFTLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVR 197

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL-- 326
           +F  M+  + V++T+M+ G A  G + +AL LF  M   GV  + +++ S+L AC+    
Sbjct: 198 LFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACA 257

Query: 327 --YYLKR----GRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
             Y + R    G+++HA  +++    +  V  +LIDMY KC  +  + +VF        V
Sbjct: 258 TDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIV 317

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            WN ++ G    G   KAVE+   M     EPN+ T ++L      LA   +A ++H   
Sbjct: 318 SWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNL------LASCIKARDVH--- 368

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
                                     SA  +F +  I    +  W+ +++GY      + 
Sbjct: 369 --------------------------SARAMFDK--ISRPSVTTWNTLLSGYCQEEQHQD 400

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN----FMLENHQTCSRADHY 556
            + LF+ M    VQP+  T    L +CS  G+LD G  + +    F+L N    +     
Sbjct: 401 TIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASG--- 457

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
             +VD+  + G++  A  +   M  +     W +++    IH
Sbjct: 458 --LVDMYSKCGQIGIARSIFNKMTERDV-VCWNSIISGLTIH 496



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 151/291 (51%), Gaps = 11/291 (3%)

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN-GDVRNALGLFQLM 304
           N  ++NA +    + G ++ AR +   M  R+ V+W ++I+  A + GD   A+ ++  M
Sbjct: 73  NDYSYNAALSAACRAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYGRM 132

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
           + EG+ P   T+ S+LSAC  L  L  GR  H   +K  L+    VE AL+ MY KC  V
Sbjct: 133 RAEGLLPTHFTLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSV 192

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA- 423
             + ++F   ++   V + A++ G    G    A+ LF +M    V  +  +++S+L A 
Sbjct: 193 GDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGAC 252

Query: 424 -------YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
                  Y++    +    IH  ++R GF S   V   LID+Y+KC  ++ A K+F  +P
Sbjct: 253 AQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLP 312

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
                IV W+++I G+G  G    AV +   M ++G +PNEVT+++ L +C
Sbjct: 313 --SVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASC 361



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 144/346 (41%), Gaps = 56/346 (16%)

Query: 347 EVIVETALIDMYAKCNLVK---LSFQVFARTS---------------------------- 375
           +  +   L+++Y++  L +   L+F+     +                            
Sbjct: 42  DTFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMP 101

Query: 376 KKKTVPWNAILAGCVHN-GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
           ++  V WN +++    + G   +AVE++ +M  E + P   TL S+L A   LA L    
Sbjct: 102 RRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDGR 161

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
             H   ++ G  +   V   L+ +Y+KCGS+  A ++F  +   ++  V ++ ++ G   
Sbjct: 162 RCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNE--VSFTAMMGGLAQ 219

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL-DLFNFMLENHQTCSR- 552
            G  + A+ LF  M +SGV  + V+ +S L AC+     D  +   F      H    R 
Sbjct: 220 TGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVVRK 279

Query: 553 ---ADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL------GACVIHGNV 601
              +D +    ++D+  +   +DEA  +  ++P   T   W  L+      G+C     V
Sbjct: 280 GFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLP-SVTIVSWNILITGFGQEGSCA--KAV 336

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           E+  +  +  FE       N V  S L ++  + +D  + R + D+
Sbjct: 337 EVLSLMQEAGFE------PNEVTYSNLLASCIKARDVHSARAMFDK 376


>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 587

 Score =  361 bits (927), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 195/552 (35%), Positives = 306/552 (55%), Gaps = 10/552 (1%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           T   ++  C+     + G++LH  VL TG   D F+ N ++ MY   G    AR+VFD M
Sbjct: 5   TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
           +E ++VSW+ +ISGY +    + A+ ++  M    + P+     SV+ AC  L  + +G+
Sbjct: 65  FEKNLVSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLGQ 121

Query: 233 MIHELVAGGRLGKNIAAW--NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
            IH      + G    ++  N+L+ MY+KC   ++A  VF    E + V++ ++I G+  
Sbjct: 122 KIHSRSL--KFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVE 179

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           N  +   L  F+LM+ +G+ P+      +L  C++   LKRG  LH  T+K NL+    +
Sbjct: 180 NQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFI 239

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV- 409
              +I MY++ NL++ + + F    +K  + WN ++A C H     K + +F+ M  E  
Sbjct: 240 GNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETN 299

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           V P+D T  S L A A LA +     IH +L+R      + V   L+++Y+KCG +  A+
Sbjct: 300 VRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAY 359

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
            IFS++     ++V W+ IIAG+G HG GE AV LF++M  SG++P+ VTF   L AC+H
Sbjct: 360 DIFSKMV--HHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNH 417

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
            GL+D+G   FN M E +      +H++C++D+LGRAGRL+EA + +R  P      V  
Sbjct: 418 AGLVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLV 477

Query: 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
           +LL A  +HG+V +GE  AKWL +L+P     YVLLS LY++   W      R  +   G
Sbjct: 478 SLLSASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGSG 537

Query: 650 LRKAPAHSLIEV 661
           L+K P HSLIEV
Sbjct: 538 LKKEPGHSLIEV 549



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 142/492 (28%), Positives = 242/492 (49%), Gaps = 15/492 (3%)

Query: 13  THLVIKLVQQYAATKSIAGTKQLHAFIITSGP-----LFTHLRSSLVRAYGHVSNVRILF 67
           T  +  L+   + TK++     LHA ++ +G      +  H+ +   +  GH +  R +F
Sbjct: 3   TETLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKC-GHTTFARQVF 61

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           DEM E++   ++ ++  Y Q G    ++ ++  M  +    P+ Y +  VI AC  L+  
Sbjct: 62  DEMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMFLV----PNEYVFASVISACASLSAV 117

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
            LG  +H R L  G++  +FV N LI+MYM   +   A  VF    E + VS+N LI+G+
Sbjct: 118 TLGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGF 177

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            +N   +  L  F  M + G+ PD  + + VL  C   + ++ G  +H       L    
Sbjct: 178 VENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTP 237

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
              N ++ MY +   + EA   F  + E+DV++W ++I   +   D    L +F+ M  E
Sbjct: 238 FIGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEE 297

Query: 308 -GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
             VRP+  T  S L+AC+ L  +  G+ +HA  ++  L  ++ V  AL++MYAKC  +  
Sbjct: 298 TNVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGY 357

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--Y 424
           ++ +F++      V WN I+AG  ++GL  +AVELF QM    + P+  T   LL A  +
Sbjct: 358 AYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNH 417

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           A L D  Q +  +     YG    +E  + LID+  + G L  A +   + P  +  +V+
Sbjct: 418 AGLVDKGQ-LYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVL 476

Query: 485 WSVIIAGYGMHG 496
            S++ A   +HG
Sbjct: 477 VSLLSASR-LHG 487



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 113/230 (49%), Gaps = 2/230 (0%)

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           F  + E+    +NT++   +        L++F  M       PD++T+   + AC  LA 
Sbjct: 260 FRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETNVRPDDFTFTSALAACAGLAS 319

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
              G  +H  ++ T    D  VGN L+ MY   G +  A  +F  M  H++VSWNT+I+G
Sbjct: 320 MSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAYDIFSKMVHHNLVSWNTIIAG 379

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM-IHELVAGGRLGK 245
           +  +   + A+ +F+ M  SG+ PD  + + +L AC +   ++ G++  + +     +  
Sbjct: 380 FGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLYFNSMEETYGIAP 439

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSE-RDVVTWTSMINGYALNGDV 294
           +I  ++ L+DM  + G +NEA     +     D V   S+++   L+GDV
Sbjct: 440 DIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVSLLSASRLHGDV 489


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 215/602 (35%), Positives = 314/602 (52%), Gaps = 71/602 (11%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H R++ T F  + F+ N L+ +Y   G ++ ARKVFD M + +  SWN ++    K   
Sbjct: 41  VHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGA 100

Query: 193 AKEALVVFDWM------------------------LKSGVEPDCASVV-------SVLPA 221
             EAL +F  M                        L+  V+      V       S L A
Sbjct: 101 LDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSA 160

Query: 222 CGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTW 281
           C  L ++ +G  IH L+A  R   ++   +ALVDMY KC  V  A+  FD M  R++V+W
Sbjct: 161 CAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSW 220

Query: 282 TSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
            S+I  Y  NG    AL +F  M   G+ P+ +T+ S+ SAC+SL  ++ G  +HA  +K
Sbjct: 221 NSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMK 280

Query: 342 QN-LECEVIVETALIDMYAKCNLVKLSFQVFARTS------------------------- 375
            +    ++++  AL+DMYAKC  V  +  VF R                           
Sbjct: 281 HDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARL 340

Query: 376 ------KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
                 ++  V WNA++AG   NG   +AV LF  +  E + P   T  +LL A A LAD
Sbjct: 341 MFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLAD 400

Query: 430 LQQAMNIHCYLIRYGFL------SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
           L+     H +++++GF       S + V   LID+Y KCG +E    +F  +   ++D V
Sbjct: 401 LKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERML--ERDNV 458

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ +I GY  +G+G  A+ +F+EM+ SG +P+ VT    L ACSH GL++EG   F  M
Sbjct: 459 SWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSM 518

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
              H      DHYTC+VDLLGRAG LDEA +LI+TMP++P   VWG+LL AC +HGN+ L
Sbjct: 519 TIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITL 578

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           G+  A+ L E++P N G YVLLS +Y+ + RWKD   VR  M + G+ K P  S I +++
Sbjct: 579 GKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISIQS 638

Query: 664 IL 665
            L
Sbjct: 639 HL 640



 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 171/558 (30%), Positives = 278/558 (49%), Gaps = 84/558 (15%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIIT---SGPLFTHLRSSLVRAYGH---VSNVRILFDEMS 71
           KL+     +KS+   + +HA II    S  +F  +++ LV  YG    + + R +FD M 
Sbjct: 24  KLLDTCVKSKSVFEARLVHARIIKTQFSSEIF--IQNRLVDVYGKCGFLEDARKVFDHMQ 81

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGM------------------------LRL--- 104
           +R++F +N V+    + GA  ++L +F  M                        LR    
Sbjct: 82  QRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVD 141

Query: 105 ---GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGE 161
               ++  + Y++   + AC  L    +G+ +HG +  + + +D ++G+ L+ MY     
Sbjct: 142 MHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRV 201

Query: 162 VKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPA 221
           V +A++ FD M   ++VSWN+LI+ Y +N  A +AL VF  M+  G+EPD  ++ SV  A
Sbjct: 202 VASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASA 261

Query: 222 CGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS------ 274
           C  L  I  G  IH  ++   +   ++   NALVDMY KC  VNEARLVFDRM       
Sbjct: 262 CASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVS 321

Query: 275 -------------------------ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
                                    ER+VV+W ++I GY  NG+   A+ LF L++ E +
Sbjct: 322 ETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESI 381

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL------ECEVIVETALIDMYAKCNL 363
            P   T G+LL+AC++L  LK GR  H   +K         + ++ V  +LIDMY KC L
Sbjct: 382 WPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGL 441

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           V+    VF R  ++  V WNA++ G   NG   +A+E+FR+MLV    P+  T+  +L A
Sbjct: 442 VEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSA 501

Query: 424 YAILADLQQAMNIHCYL----IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
            +    +++     CY     I +G + V +  T ++D+  + G L+ A+ +   +P+ +
Sbjct: 502 CSHAGLVEEG---RCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPM-E 557

Query: 480 KDIVVWSVIIAGYGMHGH 497
            D VVW  ++A   +HG+
Sbjct: 558 PDAVVWGSLLAACKVHGN 575



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 125/499 (25%), Positives = 209/499 (41%), Gaps = 110/499 (22%)

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D +    +L  C   K +   R++H  +   +    I   N LVD+Y KCG + +AR VF
Sbjct: 18  DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77

Query: 271 DRMS-------------------------------ERDVVTWTSMINGYALNGDVRNALG 299
           D M                                ERD  +W +M++G+A       AL 
Sbjct: 78  DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALR 137

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
               M  E    N  + GS LSAC+ L  L  G  +H    K     +V + +AL+DMY+
Sbjct: 138 FVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYS 197

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           KC +V  + + F     +  V WN+++     NG A KA+E+F +M+   +EP++ TL S
Sbjct: 198 KCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLAS 257

Query: 420 LLPAYAILADLQQAMNIHCYLIRYG-FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           +  A A L+ +++ + IH  ++++  + + + +   L+D+Y+KC  +  A  +F  +P++
Sbjct: 258 VASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317

Query: 479 D-----------------------------KDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
           D                             +++V W+ +IAGY  +G  E AV LF  + 
Sbjct: 318 DVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLK 377

Query: 510 QSGVQPNEVTFTSALHACS-----------------HG---------------------- 530
           +  + P   TF + L+AC+                 HG                      
Sbjct: 378 RESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYM 437

Query: 531 --GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL---KPTH 585
             GL+++G  +F  MLE          +  ++    + G   EA ++ R M +   +P H
Sbjct: 438 KCGLVEDGRLVFERMLERDNVS-----WNAMIVGYAQNGYGTEALEIFREMLVSGERPDH 492

Query: 586 AVWGALLGACVIHGNVELG 604
                +L AC   G VE G
Sbjct: 493 VTMIGVLSACSHAGLVEEG 511



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 147/325 (45%), Gaps = 40/325 (12%)

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
           A +G VR  +G    +       +S     LL  C     +   R +HA  IK     E+
Sbjct: 2   AKHGLVRKVVGDLSFL-------DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEI 54

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM--- 405
            ++  L+D+Y KC  ++ + +VF    ++ T  WNA+L      G   +A+ LF+ M   
Sbjct: 55  FIQNRLVDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPER 114

Query: 406 ---------------------LVEVVEP-------NDATLNSLLPAYAILADLQQAMNIH 437
                                L  VV+        N+ +  S L A A L DL   + IH
Sbjct: 115 DQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIH 174

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
             + +  +   V + + L+D+YSKC  + SA + F ++ +  ++IV W+ +I  Y  +G 
Sbjct: 175 GLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDV--RNIVSWNSLITCYEQNGP 232

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
              A+ +F  M+  G++P+E+T  S   AC+    + EGL +   ++++ +  +      
Sbjct: 233 AGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGN 292

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLK 582
            +VD+  +  R++EA  +   MPL+
Sbjct: 293 ALVDMYAKCRRVNEARLVFDRMPLR 317


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 192/530 (36%), Positives = 306/530 (57%), Gaps = 3/530 (0%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H +++ +G   +TF+ N L+  Y+  G +  A+++F      +VVSW  LISG  KN  
Sbjct: 43  IHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDC 102

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
             EA+ VF  M+    +P+  ++ SVLPA   L  I + + +H     G    N+    A
Sbjct: 103 FVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETA 162

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           LVDMY K G +  AR +F+ MSER+VVTW ++++GY+ +G    A+ LF LM+ +G+  +
Sbjct: 163 LVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVD 222

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
             TI SL+ A  S+  L+ G  +H + I+   E +  ++TAL+D+Y   N V  + +VF+
Sbjct: 223 FYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFS 282

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQML-VEVVEPNDATLNSLLPAYAILADLQ 431
             S K    W  +L G        +A++ F +ML ++ ++ +   L  +L + +    LQ
Sbjct: 283 EMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQ 342

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           Q   +H   I+  F + + V + +ID+Y+ CG+LE A + F    + +KD+V W+ +IAG
Sbjct: 343 QGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFF--YGMGEKDVVCWNAMIAG 400

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
            GM+G+G  A+ LF +M  SG+ P+E TF S L+ACSH G++ EGL +F  M++      
Sbjct: 401 NGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIP 460

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
              HY C++D+LGRAG+LD AY  I  MP +P   V+  LLGAC IHGN++LG   ++ +
Sbjct: 461 NLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKI 520

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           FE+EP + G YVLLS +Y+    W+  +  R  +  K ++K P  S IE+
Sbjct: 521 FEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEI 570



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/524 (26%), Positives = 281/524 (53%), Gaps = 14/524 (2%)

Query: 7   HTLPKTTHLVIKLVQQYAAT----KSIAGTKQLHAFIITSGPLF-THLRSSLVRAY---G 58
           H     T  +  L Q +A+     K +   +Q+HA IITSG    T L +SL+ AY   G
Sbjct: 11  HLSSNPTQRLSPLAQPHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCG 70

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
            +++ + +F     ++   +  ++   A+N    +++ +F  M+ +G + P+  T   V+
Sbjct: 71  LLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMI-MGNFKPNAVTISSVL 129

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
            A  +L   ++  ++H   +  GF+ + FV   L+ MY  FG +  AR++F++M E +VV
Sbjct: 130 PAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVV 189

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           +WN ++SGY  + +++EA+ +F+ M + G+  D  +++S++PA   +  +++G  IH  +
Sbjct: 190 TWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFI 249

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
                  +     AL+D+YV    V++A  VF  MS +DV  WT M+ G++       A+
Sbjct: 250 IRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAI 309

Query: 299 GLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
             F +++  + ++ +S+ +  +LS+CS    L++GR +HA  IK      + V +A+IDM
Sbjct: 310 KHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDM 369

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YA C  ++ + + F    +K  V WNA++AG   NG    A++LF QM    ++P+++T 
Sbjct: 370 YANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTF 429

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYG-FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
            S+L A +    + + + I  ++++    +  ++    +IDI  + G L++A+   + +P
Sbjct: 430 VSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMP 489

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
            +  D  V+S ++    +HG+ +    + +++ +  ++PN+  +
Sbjct: 490 FQ-PDFDVYSTLLGACRIHGNIKLGHEISQKIFE--MEPNDAGY 530



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 218/413 (52%), Gaps = 18/413 (4%)

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           LK+++  + IH  +    L  N    N+L++ YV CG + +A+ +F     ++VV+WT +
Sbjct: 34  LKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTIL 93

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           I+G A N     A+ +F+ M     +PN++TI S+L A ++L  ++  +S+H + ++   
Sbjct: 94  ISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGF 153

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
           E  V VETAL+DMY+K   + ++ Q+F   S++  V WNAI++G   +G + +A++LF  
Sbjct: 154 EGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNL 213

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           M  + +  +  T+ SL+PA   +  LQ    IH ++IR G+ +   + T L+DIY     
Sbjct: 214 MRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNC 273

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP---NEVTFT 521
           ++ AH++FSE+ +  KD+  W++++ G+    H + A+  F +M+  G+Q    + +   
Sbjct: 274 VDDAHRVFSEMSV--KDVAAWTLMLTGFSSGRHWDRAIKHFNKML--GIQNLKLDSIALM 329

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTM 579
             L +CSH G L +G  +    +   +TC   + +  + ++D+    G L++A      M
Sbjct: 330 GILSSCSHSGALQQGRRVHALAI---KTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGM 386

Query: 580 PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE--NPGNYVLLSKLYS 630
             K     W A++    ++G    G  A     +++    +P     +S LY+
Sbjct: 387 GEKDV-VCWNAMIAGNGMNG---YGTDAIDLFLQMKGSGLDPDESTFVSVLYA 435


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 196/608 (32%), Positives = 330/608 (54%), Gaps = 4/608 (0%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +G +S  R LFD M ER++  +  ++  Y Q+  S ++ +++  M R G   PD  T   
Sbjct: 87  FGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRR-GGIEPDYVTLVT 145

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           ++    +L  + + + +H  V+  G++ +  V N L+  Y     +  A ++F  M    
Sbjct: 146 LLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKD 205

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
            V++N+L++GY      +EA+ +F  +  SG++P   +  ++L A   L + + G+ +H 
Sbjct: 206 TVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHG 265

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            V       N+   NAL+D Y K   V+E   +F  M E D +++  +I  YA NG  + 
Sbjct: 266 FVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKE 325

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           +  LF+ +QF           +LLS  +S   L+ GR +H   I      E  VE AL+D
Sbjct: 326 SFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVD 385

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MYAKCN  K + ++F   + K TVPW A+++  V  G   + + +F  M    V  + AT
Sbjct: 386 MYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQAT 445

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
             S+L A A LA +     +H  LIR GF+S V   + L+D Y+KCG +  A K F E+P
Sbjct: 446 FASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMP 505

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
             +++ V W+ +I+ Y  +G+ +  ++ F++M+QSG +P+ V+F S L ACSH G ++E 
Sbjct: 506 --ERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEA 563

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
           L  FN M + ++   + +HYT +VD+L R GR DEA  L+  MP +P+  +W ++L +C 
Sbjct: 564 LWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCR 623

Query: 597 IHGNVELGEVAAKWLFELEP-ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
           IH N EL + AA  LF +E   +   Y+ +S +Y+   +W +   V+  M ++G+RK PA
Sbjct: 624 IHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPA 683

Query: 656 HSLIEVRN 663
           +S +E+++
Sbjct: 684 YSWVEIKH 691



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 132/458 (28%), Positives = 227/458 (49%), Gaps = 4/458 (0%)

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           +T   N +I+ ++ FG++  AR++FD M E + VSW  LI GY ++  +KEA  ++  M 
Sbjct: 73  NTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMR 132

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
           + G+EPD  ++V++L   G L+   +   IH  V       N+   N+LVD Y K   + 
Sbjct: 133 RGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLY 192

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
            A  +F  M  +D VT+ S++ GY+  G    A+ LF  +   G++P+  T  +LLSA  
Sbjct: 193 LASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAV 252

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
            L   K G+ +H + +K N    V V  AL+D Y+K + V    ++F    +   + +N 
Sbjct: 253 GLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNV 312

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           ++     NG  +++ +LFR++     +       +LL       +L+    IHC  I  G
Sbjct: 313 VITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVG 372

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
                 V   L+D+Y+KC   + A KIF  I    K  V W+ +I+ Y   G  E  +++
Sbjct: 373 ANFESRVENALVDMYAKCNGDKEAQKIFDNIAC--KSTVPWTAMISAYVQKGKHEEGINV 430

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           F +M ++GV  ++ TF S L AC++   +  G  L + ++ +    S     + ++D   
Sbjct: 431 FSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRS-GFMSNVYSGSALLDTYA 489

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           + G + +A      MP + +   W AL+ A   +GNV+
Sbjct: 490 KCGCMTDAIKSFGEMPERNS-VSWNALISAYAQNGNVD 526



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 195/414 (47%), Gaps = 32/414 (7%)

Query: 203 MLKSGVEPD-CASVVSVLPACGYLKEIEMGRMIHELVAGGRL-GKNIAAWNALVDMYVKC 260
           ++K+G  P+ C S   V         +E G ++H      ++  KN  + N ++  ++K 
Sbjct: 34  IVKTGFNPNTCRSNFQVN------NFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKF 87

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           G +++AR +FD M ER  V+WT +I GY  +   + A  L+  M+  G+ P+ +T+ +LL
Sbjct: 88  GKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLL 147

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           S    L        +H   IK   E  ++V  +L+D Y K + + L+ Q+F     K TV
Sbjct: 148 SGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTV 207

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            +N+++ G  + GL  +A+ELF ++    ++P+D T  +LL A   L D +    +H ++
Sbjct: 208 TFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFV 267

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           ++  F+  V V   L+D YSK   ++   K+F E+P  + D + ++V+I  Y  +G  + 
Sbjct: 268 LKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMP--ELDGISYNVVITSYAWNGQFKE 325

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL----------FNFMLENHQTC 550
           +  LF+++  +     +  F + L   +    L  G  +          F   +EN    
Sbjct: 326 SFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVEN---- 381

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
                   +VD+  +     EA  +   +  K T   W A++ A V  G  E G
Sbjct: 382 -------ALVDMYAKCNGDKEAQKIFDNIACKST-VPWTAMISAYVQKGKHEEG 427


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 195/533 (36%), Positives = 293/533 (54%), Gaps = 35/533 (6%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H R++      ++ +G  L+  Y +  +V  ARKVFD + E +V+  N +I  Y  N +
Sbjct: 62  VHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGF 121

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            +E + VF  M    V+PD  +   VL AC     I +G+ IH       L   +   N 
Sbjct: 122 YREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNG 181

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           LV MY KCG ++EARLV D MS RDVV+W S++ GYA N    +AL + + M+   +  +
Sbjct: 182 LVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHD 241

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           + T+ SLL A S+             T  +N+            MY K         +F 
Sbjct: 242 AGTMASLLPAVSN-------------TTTENV------------MYVK--------DMFF 268

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           +  KK  V WN ++   + N +  +AVEL+  M  +  EP+  ++ S+LPA    + L  
Sbjct: 269 KMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSL 328

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              IH Y+ R   +  + +   LID+Y+KCG L+ A  +F  +  K +D+V W+ +I+ Y
Sbjct: 329 GKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENM--KSRDVVSWTAMISAY 386

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
           G  G G  AV+LF +M  SG+ P+ + F + L ACSH GLL+EG   F  M ++++   R
Sbjct: 387 GFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPR 446

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
            +H  C+VDLLGRAG++ EAY  I+ MP++P   VWGALLGAC +H N ++G +AA  LF
Sbjct: 447 LEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAADKLF 506

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           +L PE  G YVLLS +Y+   RW++  N+R++M  KGL+K P  S +EV  I+
Sbjct: 507 QLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRII 559



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 136/466 (29%), Positives = 216/466 (46%), Gaps = 94/466 (20%)

Query: 10  PKTTHLVI-KLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAYGHVSNV---R 64
           PK T  ++ +++  Y   K++   + +H+ II+    + + L   L+RAY  + +V   R
Sbjct: 39  PKETAFMLGQVLDTYPDLKTL---RTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATAR 95

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
            +FDE+ ER+  + N +++ Y  NG   + +++F G +      PD+YT+P V+KAC+  
Sbjct: 96  KVFDEIPERNVIIINVMIRSYVNNGFYREGIQVF-GTMCSCHVKPDHYTFPCVLKACSCS 154

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
               +G  +HG     G     FVGN L++MY   G +  AR V D M    VVSWN+L+
Sbjct: 155 GNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLV 214

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG--------YLKEI--EMGR-- 232
           +GY +N    +AL V   M    +  D  ++ S+LPA          Y+K++  +MG+  
Sbjct: 215 AGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKS 274

Query: 233 ------MIH------------ELVAGGR-------------------------LGKNIAA 249
                 MI             EL +G                           LGK I  
Sbjct: 275 LVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHG 334

Query: 250 W-------------NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
           +             NAL+DMY KCG ++ AR VF+ M  RDVV+WT+MI+ Y  +G   +
Sbjct: 335 YIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCD 394

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA-----WTIKQNLE---CEV 348
           A+ LF  MQ  G+ P+S+   + L+ACS    L+ GRS        + I   LE   C  
Sbjct: 395 AVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLAC-- 452

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGC-VHN 392
                ++D+  +   VK +++       +     W A+L  C VH+
Sbjct: 453 -----MVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHS 493



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 149/363 (41%), Gaps = 37/363 (10%)

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           R +H  +    L  N +    L+  Y     V  AR VFD + ER+V+    MI  Y  N
Sbjct: 60  RTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNN 119

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G  R  + +F  M    V+P+  T   +L ACS    +  G+ +H    K  L   + V 
Sbjct: 120 GFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVG 179

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
             L+ MY KC  +  +  V    S++  V WN+++AG   N     A+E+ R+M    + 
Sbjct: 180 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKIS 239

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
            +  T+ SLLPA +         N     + Y           + D++ K G        
Sbjct: 240 HDAGTMASLLPAVS---------NTTTENVMY-----------VKDMFFKMGK------- 272

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
                   K +V W+V+I  Y  +     AV L+  M   G +P+ V+ TS L AC    
Sbjct: 273 --------KSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTS 324

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
            L  G  +  + +E  +          ++D+  + G LD A D+   M  +     W A+
Sbjct: 325 ALSLGKKIHGY-IERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDV-VSWTAM 382

Query: 592 LGA 594
           + A
Sbjct: 383 ISA 385



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 109/236 (46%), Gaps = 5/236 (2%)

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
           V +++   +L Q    +  +  +G +L     L  L   R++H+  I ++L     +   
Sbjct: 24  VTSSVPKLELDQKNSPKETAFMLGQVLDTYPDLKTL---RTVHSRIISEDLRYNSSLGVK 80

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           L+  YA    V  + +VF    ++  +  N ++   V+NG  R+ +++F  M    V+P+
Sbjct: 81  LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPD 140

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
             T   +L A +   ++     IH    + G  S + V  GL+ +Y KCG L  A  +  
Sbjct: 141 HYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 200

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
           E  +  +D+V W+ ++AGY  +   + A+ + +EM    +  +  T  S L A S+
Sbjct: 201 E--MSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSN 254


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 197/596 (33%), Positives = 314/596 (52%), Gaps = 12/596 (2%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           M  ++   + +VM  Y +NG    +L MF  M+  G   P+++     + AC DL   + 
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESG-VAPNDFACNAALVACADLGALRA 59

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  +H   +  GF  D ++G+CLI MY   G + AA++VFD M    VV + +LIS + +
Sbjct: 60  GEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCR 119

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG--GRLGKNI 247
           N   + A      MLK G++P+  ++ ++L AC  +    +G+ IH  +    G   +++
Sbjct: 120 NGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRSQSV 175

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
            +  AL+D Y + G    A+ VFD +  ++VV+W SM+  Y  +G +  AL +F  M  E
Sbjct: 176 YSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISE 235

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           GV PN   +  +L AC S+     GR LH   IK +L  ++ V  AL+ MY +  LV+  
Sbjct: 236 GVDPNEFALSIVLGACGSIGL---GRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEEL 292

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
             +  +      V W   ++    NG   KA+ L  QM  E   PN    +S+L + A +
Sbjct: 293 EAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADV 352

Query: 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
           A L Q M  HC  ++ G  S +     LI++YSKCG + SA   F    +   D+  W+ 
Sbjct: 353 ASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFD--VMHTHDVTSWNS 410

Query: 488 IIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH 547
           +I G+  HG    A+ +F +M  +G++P++ TF   L  C+H G+++EG   F  M++ +
Sbjct: 411 LIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQY 470

Query: 548 QTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVA 607
                  HY C++D+LGR GR DEA  +I  MP +P   +W  LL +C +H N+++G++A
Sbjct: 471 SFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLA 530

Query: 608 AKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           A  L EL   +  +YVL+S +Y+    W+DA  VR  MDE G++K    S IE+ N
Sbjct: 531 ADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINN 586



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/472 (26%), Positives = 227/472 (48%), Gaps = 20/472 (4%)

Query: 33  KQLHAFIITSGPLFTH---LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYA 86
           +Q+H+  + +G  F     + S L+  Y   G +   + +FD M       Y +++  + 
Sbjct: 61  EQVHSLAVRAG--FAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFC 118

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL--ITGFDM 144
           +NG    + +  + ML+ G   P+ +T   ++ AC     R LG  +HG ++  I     
Sbjct: 119 RNGEFELAAEALIQMLKQG-LKPNEHTMTTILTACP----RVLGQQIHGYLIKKIGLRSQ 173

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
             +    LI  Y   GE K A+ VFD++   +VVSW +++  Y ++   +EAL VF  M+
Sbjct: 174 SVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMI 233

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
             GV+P+  ++  VL ACG    I +GR +H       L  +I   NAL+ MY + G V 
Sbjct: 234 SEGVDPNEFALSIVLGACG---SIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVE 290

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
           E   + +++   D+V+WT+ I+    NG    A+ L   M  EG  PN     S+LS+C+
Sbjct: 291 ELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCA 350

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
            +  L +G   H   +K   + E+    ALI+MY+KC  +  +   F          WN+
Sbjct: 351 DVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNS 410

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA-MNIHCYLIRY 443
           ++ G   +G A KA+E+F +M    ++P+D+T   +L        +++  +     + +Y
Sbjct: 411 LIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQY 470

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
            F         +ID+  + G  + A ++ +++P  + D ++W  ++A   +H
Sbjct: 471 SFTPAPSHYACMIDMLGRNGRFDEALRMINDMPF-EPDALIWKTLLASCKLH 521


>gi|225441775|ref|XP_002277828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Vitis vinifera]
          Length = 773

 Score =  361 bits (926), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 220/651 (33%), Positives = 353/651 (54%), Gaps = 10/651 (1%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSGPLFTHLR-SSLVRAYGH---VSNVRILFDEMSER 73
           +L+Q    +  +   + +HAF+   G      R ++LV  YG    + + + +FDEM  R
Sbjct: 83  QLLQISIGSGDLMLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEMLVR 142

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           ++  + T++K + Q        ++   M  +GE   + +T  ++++AC  L     G  +
Sbjct: 143 NTITWTTLIKGHLQVNDVESVFRIAREMYWVGE-EFNEHTCSVILQACDSLENLVRGEQI 201

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           HG V+  GFD D FVG  LI+MY   G++ AA KV+  +    V   N +IS Y K    
Sbjct: 202 HGFVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAGCG 261

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
           ++A+ VF  +L SG+EP+  +  +V+ AC    ++E+ R++H +      G  I+  NA+
Sbjct: 262 EKAIGVFLHLLGSGLEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGDEISVGNAI 321

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL-GLFQLMQFEGVRPN 312
           V +YVK G + EA   F  M ER++V+WT++++GY  NG+ + AL G  Q+++  GV  +
Sbjct: 322 VSVYVKHGMLEEAEKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILEL-GVGFD 380

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           S    +LL  CS    L  G  +H + +K     +V V TALID+YAKC  ++ +  VF 
Sbjct: 381 SCCFATLLDGCSECKNLGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFH 440

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
               K  V +NAIL+G +       A+ LF Q+ +  ++P+  T   LL   A  A L +
Sbjct: 441 SLLDKNIVSFNAILSGYI-GADEEDAMALFSQLRLADIKPDSVTFARLLSLSADQACLVK 499

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              +H Y+I+ GF +   V   +I +Y+KCGS+  A ++F  +   D   + W+ +I+ Y
Sbjct: 500 GKCLHAYIIKTGFEANPSVGNAVITMYAKCGSIGDACQLFYSMNYLDS--ISWNAVISAY 557

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
            +HG G  A+ LF+EM +    P+E+T  S L ACS+ GLL+EG  LFN M   +     
Sbjct: 558 ALHGQGRKALILFEEMKKEEFVPDEITILSVLQACSYSGLLEEGFCLFNDMESKYGIKPE 617

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
            +H+ C+VDLLGRAG L EA   I   P   +  +W  L+  C +HG++  G++A+K L 
Sbjct: 618 IEHFACMVDLLGRAGYLSEAMSFINRSPFSGSPLLWRTLVHVCKLHGDLNFGQIASKHLL 677

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +L PE  G+Y+L+S LY+      +A  VR VM++  + K    S IE+ N
Sbjct: 678 DLAPEEAGSYILVSNLYAGGGMLNEAARVRTVMNDLKVSKEAGSSWIEIDN 728



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 142/529 (26%), Positives = 256/529 (48%), Gaps = 18/529 (3%)

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
           + NP    +P +++         LG A+H  +   G+  D F GN L+ +Y  F ++  A
Sbjct: 73  DQNPLFNDWPQLLQISIGSGDLMLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDA 132

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           + VFD M   + ++W TLI G+ +    +    +   M   G E +  +   +L AC  L
Sbjct: 133 QSVFDEMLVRNTITWTTLIKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSL 192

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           + +  G  IH  V      +++    +L+ MY +CG +  A  V+  ++ +DV     MI
Sbjct: 193 ENLVRGEQIHGFVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMI 252

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           + Y   G    A+G+F  +   G+ PN  T  +++SAC+    ++  R LH   IK    
Sbjct: 253 SEYGKAGCGEKAIGVFLHLLGSGLEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCG 312

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
            E+ V  A++ +Y K  +++ + + F    ++  V W A+L+G V NG  +KA+E F Q+
Sbjct: 313 DEISVGNAIVSVYVKHGMLEEAEKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQI 372

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
           L   V  +     +LL   +   +L   + IH ++++ G++  V V T LID+Y+KC  L
Sbjct: 373 LELGVGFDSCCFATLLDGCSECKNLGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKL 432

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
            SA  +F    + DK+IV ++ I++GY +    E A++LF ++  + ++P+ VTF   L 
Sbjct: 433 RSARLVFHS--LLDKNIVSFNAILSGY-IGADEEDAMALFSQLRLADIKPDSVTFARLLS 489

Query: 526 ACSHGGLLDEGLDLFNFML----ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581
             +    L +G  L  +++    E + +   A     ++ +  + G + +A  L  +M  
Sbjct: 490 LSADQACLVKGKCLHAYIIKTGFEANPSVGNA-----VITMYAKCGSIGDACQLFYSMNY 544

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLLSKL 628
             + + W A++ A  +HG    G  A     E++ E   P    +LS L
Sbjct: 545 LDSIS-WNAVISAYALHGQ---GRKALILFEEMKKEEFVPDEITILSVL 589


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 186/522 (35%), Positives = 297/522 (56%), Gaps = 6/522 (1%)

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
           ++    N LI MY    E   A KVFD+M E +VVSW+ L+SG+  N   K +L +F  M
Sbjct: 410 LNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEM 469

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
            + G+ P+  +  + L ACG L  +E G  IH           +   N+LVDMY KCG +
Sbjct: 470 GRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRI 529

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV--RPNSLTIGSLLS 321
           NEA  VF R+ +R +++W +MI G+   G    AL  F +MQ   +  RP+  T+ SLL 
Sbjct: 530 NEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLK 589

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLEC--EVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           ACSS   +  G+ +H + ++    C     +  +L+D+Y KC  +  + + F +  +K  
Sbjct: 590 ACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTM 649

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           + W++++ G    G   +A+ LF+++     + +   L+S++  +A  A L+Q   +   
Sbjct: 650 ISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQAL 709

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            ++        V   ++D+Y KCG ++ A K F+E+ +KD  ++ W+V+I GYG HG G+
Sbjct: 710 AVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKD--VISWTVVITGYGKHGLGK 767

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
            +V +F EM++  ++P+EV + + L ACSH G++ EG +LF+ +LE H    R +HY C+
Sbjct: 768 KSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACV 827

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENP 619
           VDLLGRAGRL EA  LI TMP+KP   +W  LL  C +HG++ELG+   K L  ++ +NP
Sbjct: 828 VDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNP 887

Query: 620 GNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            NYV++S LY     W +  N R++ + KGL+K    S +E+
Sbjct: 888 ANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEI 929



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 132/439 (30%), Positives = 233/439 (53%), Gaps = 7/439 (1%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD M ER+   ++ +M  +  NG    SL +F  M R G Y P+ +T+   +KAC  L 
Sbjct: 434 VFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIY-PNEFTFSTNLKACGLLN 492

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             + G+ +HG  L  GF+M   VGN L+ MY   G +  A KVF  + + S++SWN +I+
Sbjct: 493 ALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIA 552

Query: 186 GYFKNAYAKEALVVFDWMLKSGVE--PDCASVVSVLPACGYLKEIEMGRMIHELV--AGG 241
           G+    Y  +AL  F  M ++ ++  PD  ++ S+L AC     I  G+ IH  +  +G 
Sbjct: 553 GFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGF 612

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
               +     +LVD+YVKCG +  AR  FD++ E+ +++W+S+I GYA  G+   A+GLF
Sbjct: 613 HCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLF 672

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
           + +Q    + +S  + S++   +    L++G+ + A  +K     E  V  +++DMY KC
Sbjct: 673 KRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKC 732

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
            LV  + + FA    K  + W  ++ G   +GL +K+V +F +ML   +EP++    ++L
Sbjct: 733 GLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVL 792

Query: 422 PAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
            A +    +++   +   L+  +G    VE    ++D+  + G L+ A  +   +PIK  
Sbjct: 793 SACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIK-P 851

Query: 481 DIVVWSVIIAGYGMHGHGE 499
           ++ +W  +++   +HG  E
Sbjct: 852 NVGIWQTLLSLCRVHGDIE 870



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 146/286 (51%), Gaps = 13/286 (4%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY---GHVSNVRILFDEMSE 72
           L++  ++T  I   KQ+H F++ SG   P    +  SLV  Y   G++ + R  FD++ E
Sbjct: 587 LLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKE 646

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNP--DNYTYPIVIKACTDLAWRKLG 130
           ++   +++++  YAQ G   +++ +F    RL E N   D++    +I    D A  + G
Sbjct: 647 KTMISWSSLILGYAQEGEFVEAMGLF---KRLQELNSQIDSFALSSIIGVFADFALLRQG 703

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
             +    +     ++T V N ++ MY+  G V  A K F  M    V+SW  +I+GY K+
Sbjct: 704 KQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKH 763

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAA 249
              K+++ +F  ML+  +EPD    ++VL AC +   I+ G  +  +L+    +   +  
Sbjct: 764 GLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEH 823

Query: 250 WNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDV 294
           +  +VD+  + G + EA+ + D M  + +V  W ++++   ++GD+
Sbjct: 824 YACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDI 869


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 198/609 (32%), Positives = 320/609 (52%), Gaps = 2/609 (0%)

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
           H+ + R LFD++ +R    +  ++  Y  +  S ++L++F  M    E   D +   + +
Sbjct: 64  HLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMRLQSELRIDPFLLSLGL 123

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
           K C        G  LHG  +  G     FVG+ L+ MYM  GE+  + KVFD M   + V
Sbjct: 124 KTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDEMPTRNAV 183

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           +W  +I+G  +  Y++  L  F  M +S VE D  +    L A      +  GR IH   
Sbjct: 184 TWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQT 243

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
                 +N    N+L  MY KCG ++     F +M   DVV+WT+++  Y   G     L
Sbjct: 244 LKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGL 303

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
             F+ M+   V PN  T  +++S C++   LK G  LHA  +       + V  +++ +Y
Sbjct: 304 QAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLY 363

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
           +KC  +    +VF     +  + W+ I+A     G   +A E   +M  E  +PN+  L 
Sbjct: 364 SKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALA 423

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           S+L     +A L+Q   +H +++  G      V + LI +Y+KCGS+  A KIF +   K
Sbjct: 424 SVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKIFMD-SWK 482

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
           D DI+ W+ +I+GY  HGH + A+ LF+ + + G++P+ VTF   L ACSH G++D G  
Sbjct: 483 D-DIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFY 541

Query: 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
            FN M +++      +HY C++DLL RAGRL +A  LIR+MP++    VW  LL AC IH
Sbjct: 542 YFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLRACRIH 601

Query: 599 GNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSL 658
           G+V+ G+ AA  + +L+P   G ++ L+ +++A  +WK+A N+R +M  KG+ K P  S 
Sbjct: 602 GDVDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKEAANIRMLMKSKGVVKEPGWSS 661

Query: 659 IEVRNILTA 667
           ++V++ + A
Sbjct: 662 VKVKDSVFA 670



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/495 (27%), Positives = 218/495 (44%), Gaps = 36/495 (7%)

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
           +D    N  + + +    +K AR +FD + +   VSW  +ISGY  ++ + EAL +F  M
Sbjct: 47  VDLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKM 106

Query: 204 -LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
            L+S +  D   +   L  CG       G  +H       L  ++   +AL+DMY+K G 
Sbjct: 107 RLQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGE 166

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           +  +  VFD M  R+ VTWT++I G    G     L  F  M    V  +S      L A
Sbjct: 167 IGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKA 226

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
            +    L  GRS+H  T+K+  +    V  +L  MY KC  +      F +      V W
Sbjct: 227 SADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSW 286

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
             I+   +  G     ++ F++M    V PN+ T ++++   A  A L+    +H +++ 
Sbjct: 287 TTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLC 346

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
            GF++ + V+  ++ +YSKCG L S  K+F    +K +DI+ WS IIA Y   G+GE A 
Sbjct: 347 VGFVNALSVANSIMTLYSKCGELASVSKVF--CSMKFRDIITWSTIIAAYSQVGYGEEAF 404

Query: 503 SLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML-----ENHQTCS------ 551
                M   G +PNE    S L  C    +L++G  L   +L     +    CS      
Sbjct: 405 EYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMY 464

Query: 552 -----------------RAD--HYTCIVDLLGRAGRLDEAYDL---IRTMPLKPTHAVWG 589
                            + D   +T ++      G   EA +L   I+ + L+P    + 
Sbjct: 465 AKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFI 524

Query: 590 ALLGACVIHGNVELG 604
            +L AC   G V+LG
Sbjct: 525 GVLTACSHAGMVDLG 539



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 177/382 (46%), Gaps = 22/382 (5%)

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           ++A  N  + + VK   + +AR +FD++ +RD V+WT++I+GY  + D   AL LF  M+
Sbjct: 48  DLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSKMR 107

Query: 306 FEG---VRPNSLTIGSLLSACS-SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
            +    + P  L++G  L  C   L YL  G +LH +++K  L   V V +AL+DMY K 
Sbjct: 108 LQSELRIDPFLLSLG--LKTCGLGLNYL-YGTNLHGFSVKXGLVNSVFVGSALLDMYMKI 164

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
             +  S +VF     +  V W A++ G V  G +   +  F  M    VE +       L
Sbjct: 165 GEIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIAL 224

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            A A    L    +IH   ++ GF     V+  L  +Y+KCG L+     F +  ++  D
Sbjct: 225 KASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRK--MRTLD 282

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           +V W+ I+  Y   G  +  +  FK M  S V PNE TF++ +  C++   L  G  L  
Sbjct: 283 VVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHA 342

Query: 542 FML----ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
            +L     N  + + +     I+ L  + G L     +  +M  +     W  ++ A   
Sbjct: 343 HVLCVGFVNALSVANS-----IMTLYSKCGELASVSKVFCSMKFRDI-ITWSTIIAA--- 393

Query: 598 HGNVELGEVAAKWLFELEPENP 619
           +  V  GE A ++L  +  E P
Sbjct: 394 YSQVGYGEEAFEYLSRMRSEGP 415


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 189/528 (35%), Positives = 297/528 (56%), Gaps = 6/528 (1%)

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
           ++G  ++    N LI MY    E   A KVFD+M E +VVSW  L+SG+  N     +L 
Sbjct: 397 LSGSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLS 456

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           +F  M + G+ P+  +  + L ACG L  +E G  IH           +   N+LVDMY 
Sbjct: 457 LFTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYS 516

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV--RPNSLTI 316
           KCG +NEA  VF  M  R +++W +MI GY   G    AL  F +MQ   +  RP+  T+
Sbjct: 517 KCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTL 576

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLEC--EVIVETALIDMYAKCNLVKLSFQVFART 374
            SLL ACSS   +  G+ +H + ++    C     +  +L+D+Y KC  +  + + F + 
Sbjct: 577 TSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQI 636

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
            +K  + W++++ G    G   +A+ LF+++     + +   L+S++  +A  A LQQ  
Sbjct: 637 KEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGK 696

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            +   +++        VS  L+D+Y KCG ++ A K F+E+ +KD  ++ W+V+I GYG 
Sbjct: 697 QMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKD--VISWTVMITGYGK 754

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           HG G+ AVS+F +M++  ++P+EV + + L ACSH G++ EG +LF+ +LE      R +
Sbjct: 755 HGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVE 814

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HY C+VDLLGRAGRL EA  L+ TMP+KP   +W  LL  C +HG++ELG+   K L  +
Sbjct: 815 HYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRI 874

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           + +NP NYV++S LY     W +  N R++   KGL+K    S +E+ 
Sbjct: 875 DGKNPANYVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEIE 922



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 142/467 (30%), Positives = 241/467 (51%), Gaps = 8/467 (1%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD M ER+   +  +M  +  NG  + SL +F  M R G Y P+ +T+   +KAC  L 
Sbjct: 426 VFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIY-PNEFTFSTNLKACGLLN 484

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             + G+ +HG  L  GF+M   VGN L+ MY   G +  A KVF  M   S++SWN +I+
Sbjct: 485 ALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIA 544

Query: 186 GYFKNAYAKEALVVFDWMLKSGVE--PDCASVVSVLPACGYLKEIEMGRMIHELV--AGG 241
           GY    Y   AL  F  M ++ ++  PD  ++ S+L AC     I  G+ IH  +  +G 
Sbjct: 545 GYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGF 604

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
               +     +LVD+YVKCG++  AR  FD++ E+ +++W+S+I GYA  GD   A+GLF
Sbjct: 605 HCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLF 664

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
           + +Q    + +S  + S++   +    L++G+ + A  +K     E  V  +L+DMY KC
Sbjct: 665 KRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKC 724

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
            LV  + + FA    K  + W  ++ G   +GL +KAV +F +ML   +EP++    ++L
Sbjct: 725 GLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVL 784

Query: 422 PAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
            A +    +++   +   L+   G    VE    ++D+  + G L+ A  +   +PIK  
Sbjct: 785 SACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIK-P 843

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQ-SGVQPNEVTFTSALHA 526
           ++ +W  +++   +HG  E    + K +++  G  P      S L+ 
Sbjct: 844 NVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGKNPANYVMMSNLYG 890



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 168/332 (50%), Gaps = 11/332 (3%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY---GHVSNVRILFDEMSE 72
           L++  ++T  I   KQ+H F++ SG   P    +  SLV  Y   G++ + R  FD++ E
Sbjct: 579 LLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKE 638

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           ++   +++++  YAQ G   +++ +F  +  L     D++    +I    D A  + G  
Sbjct: 639 KTMISWSSLILGYAQEGDFVEAMGLFKRLQELSS-QIDSFVLSSIIGVFADFALLQQGKQ 697

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +   V+     ++T V N L+ MY+  G V  A K F  M    V+SW  +I+GY K+  
Sbjct: 698 MQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGL 757

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAAWN 251
            K+A+ +F+ ML+  +EPD    ++VL AC +   I+ G  +  +L+    +   +  + 
Sbjct: 758 GKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYA 817

Query: 252 ALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNALGLFQ-LMQFEGV 309
            +VD+  + G + EA+ + D M  + +V  W ++++   ++GD+     + + L++ +G 
Sbjct: 818 CVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGK 877

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
            P +  + S L   +  Y+ ++G +    +IK
Sbjct: 878 NPANYVMMSNLYGQAG-YWNEQGNARELGSIK 908


>gi|242032375|ref|XP_002463582.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
 gi|241917436|gb|EER90580.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
          Length = 610

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 204/510 (40%), Positives = 288/510 (56%), Gaps = 8/510 (1%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           T+  ++K C   A    G A+H ++   G   ++     L  MY        AR+VFD M
Sbjct: 61  TFTALLKLCAARADLATGRAVHAQLTARGLASESLAATALANMYFKCRRPVDARRVFDRM 120

Query: 173 WEHSVVSWNTLISGYFKN---AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
                V+WN L++GY +N   A A EA+V      + G +PD  ++VSVLPAC   + + 
Sbjct: 121 PARDRVAWNALVAGYARNGLPALAMEAVVRMQGE-EGGEQPDSITLVSVLPACADARVLG 179

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
             R +H       L + +    A++D Y KCG+V  AR VFD M  R+ V+W +MI+GYA
Sbjct: 180 ACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDWMPVRNSVSWNAMIDGYA 239

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            NG+   AL LF  M  EGV      + + L AC  L  L   R +H   ++  L+  V 
Sbjct: 240 ENGNASEALALFWRMVQEGVDVTDAAVLAALQACRELGCLDEARRVHELLVRVGLKSNVS 299

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKT-VPWNAILAGCVHNGLARKAVELFRQMLVE 408
           V  ALI  Y+KC    L+   F     KKT + WNA++ G   NG +  A  LF +M +E
Sbjct: 300 VMNALITTYSKCKRADLAAHAFNELGIKKTRISWNAMILGFTQNGCSEDAERLFARMQLE 359

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            V+P+  TL S++PA A ++D  QA  IH Y IR+     + V T LID+YSKCG +  A
Sbjct: 360 NVKPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDIYVLTALIDMYSKCGRVTIA 419

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            K+F     +D+ ++ W+ +I GYG HG G+ AV LF+EM  +G  PNE TF S L ACS
Sbjct: 420 RKLFDS--ARDRHVITWNAMIHGYGSHGFGQVAVELFEEMKGTGSLPNETTFLSVLAACS 477

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           H GL+DEG   F  M +++      +HY  +VDLLGRAG++DEA+  I+ MP++P  +V+
Sbjct: 478 HAGLVDEGRKYFASM-KDYGLEPGMEHYGTLVDLLGRAGKVDEAWSFIQNMPIEPGISVY 536

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPEN 618
           GA+LGAC +H NVEL E +A+ +FEL PE 
Sbjct: 537 GAMLGACKLHKNVELAEESAQKIFELGPEE 566



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 152/516 (29%), Positives = 257/516 (49%), Gaps = 13/516 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSS-LVRAYGHVS---NVRILFDEMSERS 74
           L++  AA   +A  + +HA +   G     L ++ L   Y       + R +FD M  R 
Sbjct: 65  LLKLCAARADLATGRAVHAQLTARGLASESLAATALANMYFKCRRPVDARRVFDRMPARD 124

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGML-RLGEYNPDNYTYPIVIKACTDLAWRKLGIA- 132
              +N ++  YA+NG    +++  + M    G   PD+ T   V+ AC D   R LG   
Sbjct: 125 RVAWNALVAGYARNGLPALAMEAVVRMQGEEGGEQPDSITLVSVLPACADA--RVLGACR 182

Query: 133 -LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H   L  G D    V   ++  Y   G V+AAR VFD M   + VSWN +I GY +N 
Sbjct: 183 EVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDWMPVRNSVSWNAMIDGYAENG 242

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
            A EAL +F  M++ GV+   A+V++ L AC  L  ++  R +HEL+    L  N++  N
Sbjct: 243 NASEALALFWRMVQEGVDVTDAAVLAALQACRELGCLDEARRVHELLVRVGLKSNVSVMN 302

Query: 252 ALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           AL+  Y KC   + A   F+ +  ++  ++W +MI G+  NG   +A  LF  MQ E V+
Sbjct: 303 ALITTYSKCKRADLAAHAFNELGIKKTRISWNAMILGFTQNGCSEDAERLFARMQLENVK 362

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           P+S T+ S++ A + +    + R +H ++I+  L+ ++ V TALIDMY+KC  V ++ ++
Sbjct: 363 PDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDIYVLTALIDMYSKCGRVTIARKL 422

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F     +  + WNA++ G   +G  + AVELF +M      PN+ T  S+L A +    +
Sbjct: 423 FDSARDRHVITWNAMIHGYGSHGFGQVAVELFEEMKGTGSLPNETTFLSVLAACSHAGLV 482

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
            +       +  YG    +E    L+D+  + G ++ A      +PI +  I V+  ++ 
Sbjct: 483 DEGRKYFASMKDYGLEPGMEHYGTLVDLLGRAGKVDEAWSFIQNMPI-EPGISVYGAMLG 541

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
              +H + E A    +++ + G  P E + +  ++A
Sbjct: 542 ACKLHKNVELAEESAQKIFELG--PEEGSLSQTMNA 575



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 139/436 (31%), Positives = 213/436 (48%), Gaps = 36/436 (8%)

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           P   +  ++L  C    ++  GR +H +L A G   +++AA  AL +MY KC    +AR 
Sbjct: 57  PVLRTFTALLKLCAARADLATGRAVHAQLTARGLASESLAA-TALANMYFKCRRPVDARR 115

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE--GVRPNSLTIGSLLSACSSL 326
           VFDRM  RD V W +++ GYA NG    A+     MQ E  G +P+S+T+ S+L AC+  
Sbjct: 116 VFDRMPARDRVAWNALVAGYARNGLPALAMEAVVRMQGEEGGEQPDSITLVSVLPACADA 175

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             L   R +HA+ ++  L+  V V TA++D Y KC  V+ +  VF     + +V WNA++
Sbjct: 176 RVLGACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDWMPVRNSVSWNAMI 235

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
            G   NG A +A+ LF +M+ E V+  DA + + L A   L  L +A  +H  L+R G  
Sbjct: 236 DGYAENGNASEALALFWRMVQEGVDVTDAAVLAALQACRELGCLDEARRVHELLVRVGLK 295

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           S V V   LI  YSKC   + A   F+E+ IK K  + W+ +I G+  +G  E A  LF 
Sbjct: 296 SNVSVMNALITTYSKCKRADLAAHAFNELGIK-KTRISWNAMILGFTQNGCSEDAERLFA 354

Query: 507 EMVQSGVQPNEVTFTSALHACS-----------HGGLLDEGLDLFNFMLENHQTCSRADH 555
            M    V+P+  T  S + A +           HG  +   LD   ++L           
Sbjct: 355 RMQLENVKPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDIYVL----------- 403

Query: 556 YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV-WGALLGACVIHGNVELGEVAAKWLFEL 614
            T ++D+  + GR+  A  L  +   +  H + W A++     HG    G+VA +   E+
Sbjct: 404 -TALIDMYSKCGRVTIARKLFDSA--RDRHVITWNAMIHGYGSHG---FGQVAVELFEEM 457

Query: 615 EPEN--PGNYVLLSKL 628
           +     P     LS L
Sbjct: 458 KGTGSLPNETTFLSVL 473



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 208/432 (48%), Gaps = 16/432 (3%)

Query: 1   MNGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY-- 57
           M G      P +  LV  ++   A  + +   +++HAF + +G     ++ ++++ AY  
Sbjct: 151 MQGEEGGEQPDSITLV-SVLPACADARVLGACREVHAFALRAGLDELVNVSTAVLDAYCK 209

Query: 58  -GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
            G V   R +FD M  R+S  +N ++  YA+NG + ++L +F  M++ G  +  +     
Sbjct: 210 CGAVEAARAVFDWMPVRNSVSWNAMIDGYAENGNASEALALFWRMVQEG-VDVTDAAVLA 268

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW-EH 175
            ++AC +L        +H  ++  G   +  V N LI  Y        A   F+ +  + 
Sbjct: 269 ALQACRELGCLDEARRVHELLVRVGLKSNVSVMNALITTYSKCKRADLAAHAFNELGIKK 328

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
           + +SWN +I G+ +N  +++A  +F  M    V+PD  ++VSV+PA   + +    R IH
Sbjct: 329 TRISWNAMILGFTQNGCSEDAERLFARMQLENVKPDSFTLVSVIPAVADISDPLQARWIH 388

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
                 +L ++I    AL+DMY KCG V  AR +FD   +R V+TW +MI+GY  +G  +
Sbjct: 389 GYSIRHQLDQDIYVLTALIDMYSKCGRVTIARKLFDSARDRHVITWNAMIHGYGSHGFGQ 448

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            A+ LF+ M+  G  PN  T  S+L+ACS    +  GR   A      LE  +     L+
Sbjct: 449 VAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGRKYFASMKDYGLEPGMEHYGTLV 508

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVP-WNAILAGC-VHNGLARKAVELFRQMLVEVVE-- 411
           D+  +   V  ++        +  +  + A+L  C +H     K VEL  +   ++ E  
Sbjct: 509 DLLGRAGKVDEAWSFIQNMPIEPGISVYGAMLGACKLH-----KNVELAEESAQKIFELG 563

Query: 412 PNDATLNSLLPA 423
           P + +L+  + A
Sbjct: 564 PEEGSLSQTMNA 575


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  360 bits (925), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 191/533 (35%), Positives = 303/533 (56%), Gaps = 2/533 (0%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H R+L    D D ++ N ++   ++FG    ++ VF  + E ++  WNT+I G      
Sbjct: 35  IHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDC 94

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
             +A+ ++  M   G  P+  ++  VL AC    ++ +G  IH L+       ++    +
Sbjct: 95  FDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTS 154

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+ +YVKC + ++A  VFD + +++VV+WT++I GY  +G  R A+G F+ +   G++P+
Sbjct: 155 LLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPD 214

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           S ++  +L+AC+ L     G  +  +     +   V V T+L+DMY KC  ++ +  +F+
Sbjct: 215 SFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFS 274

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
              +K  V W+ ++ G   NGL ++A++LF QM  E ++P+  T+  +L A A L  L  
Sbjct: 275 AMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDL 334

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
            +     + R  FLS   + T LID+YSKCGS+  A +IF+   +K KD VVW+ ++ G 
Sbjct: 335 GIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFT--AMKRKDRVVWNAMMVGL 392

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
            M+GH +   SLF  + + G++P+E TF   L  C+HGG ++EG   FN M         
Sbjct: 393 SMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPS 452

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
            +HY C+VDLLGRAG L+EA+ LI  MP+KP   VWGALLG C +H +  L E   K L 
Sbjct: 453 IEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLI 512

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           ELEP N GNYV LS +YS   RW++AE +R  M E+ ++K  A S IE+  I+
Sbjct: 513 ELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIV 565



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 140/455 (30%), Positives = 249/455 (54%), Gaps = 3/455 (0%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +G  +  +++F ++ E + FL+NT+++         D++ ++ G +R G + P+N+T P 
Sbjct: 61  FGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLY-GSMRGGGFLPNNFTIPF 119

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           V+KAC      +LG+ +H  ++  G+D D FV   L+++Y+       A KVFD + + +
Sbjct: 120 VLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKN 179

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           VVSW  +I+GY  + + +EA+  F  +L+ G++PD  S+V VL AC  L +   G  I  
Sbjct: 180 VVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDR 239

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            ++   +G+N+    +L+DMYVKCG++  A L+F  M E+D+V+W++MI GYA NG  + 
Sbjct: 240 YISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQ 299

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           AL LF  MQ E ++P+  T+  +LSAC++L  L  G    +   +       ++ TALID
Sbjct: 300 ALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALID 359

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY+KC  V  ++++F    +K  V WNA++ G   NG A+    LF  +    + P++ T
Sbjct: 360 MYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENT 419

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
              LL        + +       + R +     +E    ++D+  + G L  AH++ + +
Sbjct: 420 FIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNM 479

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           P+K  + VVW  ++ G  +H     A  + K++++
Sbjct: 480 PMK-PNAVVWGALLGGCKLHKDTHLAEQVLKKLIE 513


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 191/533 (35%), Positives = 303/533 (56%), Gaps = 2/533 (0%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H R+L    D D ++ N ++   ++FG    ++ VF  + E ++  WNT+I G      
Sbjct: 35  IHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDC 94

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
             +A+ ++  M   G  P+  ++  VL AC    ++ +G  IH L+       ++    +
Sbjct: 95  FDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTS 154

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+ +YVKC + ++A  VFD + +++VV+WT++I GY  +G  R A+G F+ +   G++P+
Sbjct: 155 LLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPD 214

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           S ++  +L+AC+ L     G  +  +     +   V V T+L+DMY KC  ++ +  +F+
Sbjct: 215 SFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFS 274

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
              +K  V W+ ++ G   NGL ++A++LF QM  E ++P+  T+  +L A A L  L  
Sbjct: 275 AMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDL 334

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
            +     + R  FLS   + T LID+YSKCGS+  A +IF+   +K KD VVW+ ++ G 
Sbjct: 335 GIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFT--AMKKKDRVVWNAMMVGL 392

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
            M+GH +   SLF  + + G++P+E TF   L  C+HGG ++EG   FN M         
Sbjct: 393 SMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPS 452

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
            +HY C+VDLLGRAG L+EA+ LI  MP+KP   VWGALLG C +H +  L E   K L 
Sbjct: 453 IEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLI 512

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           ELEP N GNYV LS +YS   RW++AE +R  M E+ ++K  A S IE+  I+
Sbjct: 513 ELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIV 565



 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 141/455 (30%), Positives = 249/455 (54%), Gaps = 3/455 (0%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +G  +  +++F ++ E + FL+NT+++         D++ ++ G +R G + P+N+T P 
Sbjct: 61  FGSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLY-GSMRGGGFLPNNFTIPF 119

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           V+KAC      +LG+ +H  ++  G+D D FV   L+++Y+       A KVFD + + +
Sbjct: 120 VLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKN 179

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           VVSW  +I+GY  + + +EA+  F  +L+ G++PD  S+V VL AC  L +   G  I  
Sbjct: 180 VVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDR 239

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            ++   +G+N+    +L+DMYVKCG++  A L+F  M E+D+V+W++MI GYA NG  + 
Sbjct: 240 YISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQ 299

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           AL LF  MQ E ++P+  T+  +LSAC++L  L  G    +   +       ++ TALID
Sbjct: 300 ALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALID 359

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY+KC  V  ++++F    KK  V WNA++ G   NG A+    LF  +    + P++ T
Sbjct: 360 MYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENT 419

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
              LL        + +       + R +     +E    ++D+  + G L  AH++ + +
Sbjct: 420 FIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNM 479

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           P+K  + VVW  ++ G  +H     A  + K++++
Sbjct: 480 PMK-PNAVVWGALLGGCKLHKDTHLAEQVLKKLIE 513


>gi|147846491|emb|CAN79511.1| hypothetical protein VITISV_014157 [Vitis vinifera]
          Length = 1007

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 218/633 (34%), Positives = 344/633 (54%), Gaps = 19/633 (3%)

Query: 8   TLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSS------LVRAYGHVS 61
           T P   H ++K      ++  +   K +HA ++  G  F  L S+           G + 
Sbjct: 48  TDPTLVHSILKA----CSSLPVRHGKSIHASLLKQG--FDSLTSTGNSXXDFYMKTGALD 101

Query: 62  NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC 121
           +   +FD M  R S  +N ++  +   GAS   L  F    R+  + P+  T  + I AC
Sbjct: 102 SALFVFDSMRSRDSVSWNIMIHGHLSRGASDXGLWWFR-QARVIAFEPNVSTLVLAIHAC 160

Query: 122 TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWN 181
             L   + G+ +HG ++ +GF     V N L++MY +  +++ A ++FD M E  V+SW+
Sbjct: 161 RSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEELFDEMCERDVISWS 219

Query: 182 TLISGYFKNAYAKEALVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
            +I GY +   A  AL +F  M  +  +E D  ++VSVL AC    +I MGR +H +V  
Sbjct: 220 VMIGGYVQTGEAXMALQLFLEMXSNAXIELDGITMVSVLKACANTGDISMGRSVHGVVIC 279

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
             L  ++   N+++DMY K      A   F+ M  R+ V+W S+I+G         AL L
Sbjct: 280 RGLDYDLFVGNSIIDMYSKXDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSL 339

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
           F  M   G R + +T+ +LL +C       + + +H+  I+   E    V  +LID Y+K
Sbjct: 340 FYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSK 399

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           C+L++L++++F R   K TV W+A++AG  H G   +A+ LF++M     +PN  T+ SL
Sbjct: 400 CDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSL 459

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L A+++ ADL+++   H   IR G  + V V T ++D+Y+KCG +  + K F +IP  +K
Sbjct: 460 LEAFSVSADLKRSKWAHGIXIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIP--EK 517

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
           +IV W  +IA  GM+G    A++L  EM   G++PN VT  S L ACSHGGL++EGL  F
Sbjct: 518 NIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNXVTTLSVLSACSHGGLVEEGLSFF 577

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP--LKPTHAVWGALLGACVIH 598
             M+++H      +HY+C+VD+L RAG+L+ A +LI  MP  ++    +WGALL AC   
Sbjct: 578 ENMVQDHGVEPGLEHYSCMVDMLXRAGKLNXAMNLIEKMPERMRDGAGLWGALLSACRSS 637

Query: 599 GNVELGEVAAKWLFELEPENPGNYVLLSKLYSA 631
           GN  LG  AA  +  LEP++   Y L S +Y+A
Sbjct: 638 GNSRLGAGAAXRVLXLEPQSSAGYFLASSMYAA 670


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 215/661 (32%), Positives = 339/661 (51%), Gaps = 10/661 (1%)

Query: 9   LPK-TTHLVIKLVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY---GHVS 61
           LPK  ++   + +Q+  A       + +HA ++  G    L T   + L+  Y   G ++
Sbjct: 40  LPKLDSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLA 99

Query: 62  NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC 121
             R LFD M ER+   + T+M+ YA  G   ++L++F  + R G +  +++    ++K  
Sbjct: 100 TARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREG-HEVNHFVLTTILKVL 158

Query: 122 TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWN 181
             +    L   +H      G D + FVG  LI  Y   G V  AR VFD +     V+W 
Sbjct: 159 VTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWT 218

Query: 182 TLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG 241
            ++S Y +N   + AL  F  M  +G +P+   + S L A   L    +G+ IH      
Sbjct: 219 AMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKT 278

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
                     AL+DMY KCG + +A  +F+ +   DV+ W+ +I+ YA +     A  +F
Sbjct: 279 LYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMF 338

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
             M    V PN  ++  +L AC+++ +L+ G  +H   IK   E E+ V  AL+DMYAKC
Sbjct: 339 LRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKC 398

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
             ++ S ++F+       V WN I+ G   +G A  A+ +F +M    +     T +S+L
Sbjct: 399 RNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVL 458

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            A A  + ++ A+ IH  + +  F +   V   LID Y+KCG +  A K+F  I   + D
Sbjct: 459 RACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIV--ECD 516

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           +V W+ II+ Y +HG    A+ LF  M +S ++ N+VTF S L  C   GL+++GL LFN
Sbjct: 517 VVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFN 576

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            M+ +H+     +HYTCIV LLGRAGRL +A   I  +P  P+  VW ALL +CV+H NV
Sbjct: 577 SMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNV 636

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            LG  AA+ + ++EP +   YVLLS +Y+A     +    R  M   G++K    S +E+
Sbjct: 637 ALGRYAAEKVLDIEPHDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEI 696

Query: 662 R 662
           +
Sbjct: 697 K 697


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 210/621 (33%), Positives = 333/621 (53%), Gaps = 7/621 (1%)

Query: 47  THLRSSLVRAYGHV---SNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR 103
           T L + +++ YG      + R +FD + +R++F ++ +++ Y QN    ++L+++  M+R
Sbjct: 2   TFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVR 61

Query: 104 LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163
             E + D YT   V+ ACT L   + G  +  +    GF+ D  V   LI ++   G ++
Sbjct: 62  -KEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 164 AARKVFDAMWE-HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC 222
            A  VF +M     ++S   +I  Y ++     AL  +  M   G+EPD  +  ++L AC
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180

Query: 223 GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
                +  G+ IH+ +   +   NI+  NAL+ MY KCGS+ +++ +F  M  +DVV+W 
Sbjct: 181 SSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWN 240

Query: 283 SMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           +MI  Y L G  ++A  LF  M   G  P+  T  S+L AC+S   L+ GR LH     +
Sbjct: 241 AMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITAR 300

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
             + +  ++  LI M+ +C  ++ + + F    KK+   WN +LA        + A+ L+
Sbjct: 301 GFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLY 360

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
           + ML+E   P+  T +S++ + A L  L++   IH      GF   V + T L+++Y+KC
Sbjct: 361 KNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKC 420

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           GSL  A K F    I +KD+V WS +IA    HGH E A+ L   M   G+  NEVT +S
Sbjct: 421 GSLADAKKSFD--GISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASS 478

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
            LHACSHGG L EG+D F  + ++       ++    +DLLGRAG L EA  ++ TMP K
Sbjct: 479 VLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFK 538

Query: 583 PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642
            +      LLG C +HG+V  G+   K +  LEPENPG+YVLL+ +Y+A  RW D   +R
Sbjct: 539 VSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAKLR 598

Query: 643 DVMDEKGLRKAPAHSLIEVRN 663
             M +KG+++    S IE R+
Sbjct: 599 RYMRKKGVKRQTGCSSIEYRD 619



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 143/462 (30%), Positives = 233/462 (50%), Gaps = 11/462 (2%)

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           DTF+ N +I MY      + AR+VFD + + +  SW+ L+  Y +NA  +EAL V+  M+
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
           +  +  D  ++ SVL AC  L ++E GRM+          K++    +L+ ++ KCG + 
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 265 EARLVFDRMSE-RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
           EA  VF  M   RD+++ T+MI  Y  +G    AL  +  M+ +G+ P++ T  ++L AC
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
           SS  +L  G+ +H   ++      + V  ALI MYAKC  +K S  +F     K  V WN
Sbjct: 181 SSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWN 240

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           A++A     G  + A  LF +M      P+  T +S+L A A    L+    +H  +   
Sbjct: 241 AMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITAR 300

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
           GF     +   LI ++++CGSLESA + F    I+ K++  W+ ++A Y     G+ A+ 
Sbjct: 301 GFDRDFAMQNNLISMFTRCGSLESARRYF--YSIEKKELGAWNTMLAAYAQFDKGKDALF 358

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY---TCIV 560
           L+K M+  G  P+  TF+S + +C+  G L EG     F+ E   +C         T +V
Sbjct: 359 LYKNMLLEGFTPDRFTFSSVVDSCASLGALREG----KFIHECSTSCGFEKDVILGTALV 414

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           ++  + G L +A      +  K     W A++ A   HG+ E
Sbjct: 415 NMYAKCGSLADAKKSFDGISNKDV-VSWSAMIAASAQHGHAE 455


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 210/585 (35%), Positives = 312/585 (53%), Gaps = 36/585 (6%)

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
           +P + T   ++  C+ +   KL   +H ++++ G          L+++ +  G+++ A  
Sbjct: 36  SPTHQTLHHLLDQCSSMKRLKL---VHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHL 92

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +FD + + +   +N LI GY  +    ++L++F  M+ +G  P+  +   VL AC     
Sbjct: 93  LFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPF 152

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
                ++H       +G +    NA++  YV C  +  AR VFD +S+R +V+W SMI G
Sbjct: 153 YWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAG 212

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y+  G    A+ LFQ M   GV  +  T+ SLLSA S    L  GR +H + +   +E +
Sbjct: 213 YSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEID 272

Query: 348 VIVETALIDMYAKCN-------------------------------LVKLSFQVFARTSK 376
            IV  ALIDMYAKC                                LV+ + Q+F     
Sbjct: 273 SIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPV 332

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           K  V WN+I+   V  G   +AVELF +M +  V P+DATL S+L   +   DL      
Sbjct: 333 KNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQA 392

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           HCY+        V +   LID+Y+KCG+L++A  IF  +P  +K++V W+VII    +HG
Sbjct: 393 HCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMP--EKNVVSWNVIIGALALHG 450

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
            GE A+ +FK M  SG+ P+E+TFT  L ACSH GL+D G   F+ M+   +     +HY
Sbjct: 451 FGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHY 510

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
            C+VDLLGR G L EA  LI+ MP+KP   VWGALLGAC I+GN+E+ +   K L EL  
Sbjct: 511 ACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELGR 570

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            N G YVLLS +YS  +RW D + +R +MD+ G++K  A S IE+
Sbjct: 571 FNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGIKKCRAISFIEI 615



 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 159/557 (28%), Positives = 273/557 (49%), Gaps = 66/557 (11%)

Query: 1   MNGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLH---AFIITSGPLFTHLRSSLVRAY 57
           +  P+H TL    H ++         K +     LH   A ++T G L      SL    
Sbjct: 34  LKSPTHQTL----HHLLDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLL-----SLCVQE 84

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +    +LFD++ + + F+YN +++ Y+ +     SL +F  M+  G   P+ +T+P V
Sbjct: 85  GDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPM-PNQFTFPFV 143

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +KAC    +    + +H + +  G      V N ++  Y+    + +AR+VFD + + ++
Sbjct: 144 LKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDRTI 203

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSWN++I+GY K  +  EA+++F  ML+ GVE D  ++VS+L A      +++GR +H  
Sbjct: 204 VSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLY 263

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +    +  +    NAL+DMY KCG +  A+ VFD+M ++DVV+WTSM+N YA  G V NA
Sbjct: 264 IVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENA 323

Query: 298 LG-------------------------------LFQLMQFEGVRPNSLTIGSLLSACSSL 326
           +                                LF  M   GV P+  T+ S+LS CS+ 
Sbjct: 324 VQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNT 383

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             L  G+  H +     +   V +  +LIDMYAKC  ++ +  +F    +K  V WN I+
Sbjct: 384 GDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVII 443

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--YAILADLQQAMNIHCYLIRYG 444
                +G   +A+E+F+ M    + P++ T   LL A  ++ L D+           RY 
Sbjct: 444 GALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMG----------RYY 493

Query: 445 F---LSVVEVSTG------LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           F   +S   +S G      ++D+  + G L  A  +  ++P+K  D+VVW  ++    ++
Sbjct: 494 FDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVK-PDVVVWGALLGACRIY 552

Query: 496 GHGETAVSLFKEMVQSG 512
           G+ E A  + K++++ G
Sbjct: 553 GNLEIAKQIMKQLLELG 569


>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
          Length = 773

 Score =  360 bits (924), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 220/641 (34%), Positives = 331/641 (51%), Gaps = 18/641 (2%)

Query: 35  LHAFIITSGPLF-----THLRSSLVRAYGHVSNVR---ILFDEMSERSSFLYNTVMKMYA 86
           +HA+ +  G L        + SSLV  Y    NVR    +F+EM ER    +  V+    
Sbjct: 133 VHAYCVRYGLLVGDGDSVAVASSLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVISGCV 192

Query: 87  QNGASHDSLKMFLGMLRL---GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD 143
           +NG S + L+  + M+RL   G   P++ T    ++AC  L     G  LHG V+  G  
Sbjct: 193 RNGESGEGLRYLVEMVRLAGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIG 252

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
               V + L +MY      + A  +F  + E  VVSW +LI  Y +     EA+ +F  M
Sbjct: 253 DSPMVISALFSMYSKCYSTEDACALFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQM 312

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
           ++SG++PD   V  VL   G    +  G+  H ++     G ++   NAL+ MY K   V
Sbjct: 313 MESGLQPDEILVSCVLSGLGNNGNVHGGKTFHAVITKRNFGDSVLIGNALISMYGKFEMV 372

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA- 322
           + A  VF  + +RD  +W  M+ GY   G     L L++ MQ            SL+SA 
Sbjct: 373 DSAGRVFRLLHQRDADSWNLMVVGYCKAGCDVKCLELYREMQLRDKYEFWCVADSLVSAI 432

Query: 323 --CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKT 379
             CS L  L+ GRS H ++IK  L+ +  V   LI MY +C     + ++F     K   
Sbjct: 433 SSCSRLAELRLGRSAHCYSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDV 492

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           V WN +++   H G +  A+ L+ QML+E + PN  TL +++ A A L  L++   IH Y
Sbjct: 493 VTWNTLISSYAHLGHSNAAMSLYDQMLIEGLTPNSTTLITVISACANLVALERGEKIHSY 552

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           +   G+   V ++T LID+Y+KCG L  A +IF  +     D+V W+V+I+GYGMHG  +
Sbjct: 553 VKEMGWDYDVSINTALIDMYAKCGQLGIARRIFDSM--LQHDVVAWNVMISGYGMHGEAK 610

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
            A+ LF +M    ++PN VTF + L A  H GLL+EG  +F  M   +       HY C+
Sbjct: 611 QALELFGKMEGGSIKPNGVTFLAILSALCHSGLLEEGRKVFTRM-GKYSLEPNLKHYACM 669

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENP 619
           VDLLG++G L EA D++  MP++P   +WG LL AC +H N E+G   AK  F  +PEN 
Sbjct: 670 VDLLGKSGHLQEAEDMVLAMPIEPDGGIWGTLLSACKLHDNFEMGLRIAKKAFASDPENE 729

Query: 620 GNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           G Y+L+S  Y   ++W + E +R+ M   G++K    S ++
Sbjct: 730 GYYILISNSYGGAKKWDEIEKLRETMKNLGVQKGVGWSAVD 770



 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 170/585 (29%), Positives = 286/585 (48%), Gaps = 21/585 (3%)

Query: 34  QLHAFIITSGPLFTH--LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           ++HA  +TSG L+    L + LV AY   G      + F       +FL+N++++ +   
Sbjct: 31  RVHALAVTSG-LYQRPDLAAKLVSAYSSAGRPGLAALAFSASPRPDAFLWNSLIRTHHCA 89

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF---DMD 145
                +L     ML  G   P  +T P+   A  +L    +G A+H   +  G    D D
Sbjct: 90  SDFVAALSAHRRMLASGA-RPSPFTAPLAASASAELGALGVGAAVHAYCVRYGLLVGDGD 148

Query: 146 TF-VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           +  V + L+ MY   G V+ A KVF+ M E  VV+W  +ISG  +N  + E L     M+
Sbjct: 149 SVAVASSLVYMYARCGNVRDAVKVFEEMPERDVVAWTAVISGCVRNGESGEGLRYLVEMV 208

Query: 205 K----SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           +      V P+  ++ S L ACG L E+  GR +H  V    +G +    +AL  MY KC
Sbjct: 209 RLAGDGSVRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKC 268

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
            S  +A  +F  + E+DVV+WTS+I  Y   G +  A+ LFQ M   G++P+ + +  +L
Sbjct: 269 YSTEDACALFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVL 328

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           S   +   +  G++ HA   K+N    V++  ALI MY K  +V  + +VF    ++   
Sbjct: 329 SGLGNNGNVHGGKTFHAVITKRNFGDSVLIGNALISMYGKFEMVDSAGRVFRLLHQRDAD 388

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI---LADLQQAMNIH 437
            WN ++ G    G   K +EL+R+M +          +SL+ A +    LA+L+   + H
Sbjct: 389 SWNLMVVGYCKAGCDVKCLELYREMQLRDKYEFWCVADSLVSAISSCSRLAELRLGRSAH 448

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
           CY I++       V+  LI +Y +CG  + A KIF    +K  D+V W+ +I+ Y   GH
Sbjct: 449 CYSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKG-DVVTWNTLISSYAHLGH 507

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
              A+SL+ +M+  G+ PN  T  + + AC++   L+ G  + +++ E       + + T
Sbjct: 508 SNAAMSLYDQMLIEGLTPNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSIN-T 566

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
            ++D+  + G+L  A  +  +M L+     W  ++    +HG  +
Sbjct: 567 ALIDMYAKCGQLGIARRIFDSM-LQHDVVAWNVMISGYGMHGEAK 610



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 84/203 (41%), Gaps = 9/203 (4%)

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
           A L+  L +    + + + + +H   +  G     +++  L+  YS  G    A   FS 
Sbjct: 11  AILSRFLSSPPSPSPVLELLRVHALAVTSGLYQRPDLAAKLVSAYSSAGRPGLAALAFSA 70

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
            P    D  +W+ +I  +        A+S  + M+ SG +P+  T   A  A +  G L 
Sbjct: 71  SP--RPDAFLWNSLIRTHHCASDFVAALSAHRRMLASGARPSPFTAPLAASASAELGALG 128

Query: 535 EGLDLFNFMLENHQTCSRADHY---TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
            G  +  + +         D     + +V +  R G + +A  +   MP +   A W A+
Sbjct: 129 VGAAVHAYCVRYGLLVGDGDSVAVASSLVYMYARCGNVRDAVKVFEEMPERDVVA-WTAV 187

Query: 592 LGACVIHGNVELGEVAAKWLFEL 614
           +  CV +G  E GE   ++L E+
Sbjct: 188 ISGCVRNG--ESGE-GLRYLVEM 207


>gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 752

 Score =  360 bits (924), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 198/637 (31%), Positives = 346/637 (54%), Gaps = 9/637 (1%)

Query: 33  KQLHAFIITSGPLFTHLRSS----LVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           + +H++++ +G      + +    L   +  +   + +FD M  R++  + +++K Y ++
Sbjct: 87  QAVHSYLVKAGSQDDTFKGNNVLNLYVKFNRLDLAQKVFDRMRTRNTITWTSLIKGYLED 146

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
                +  +   M + GE N + +T  ++++AC+    R LG  +H  V+ +GFD + FV
Sbjct: 147 NDFQSAFSIAGDMHKFGE-NFNEHTCTVILQACSSPDDRILGEQIHCFVIKSGFDENVFV 205

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           G  LIAMY   G    A KVFD+M    +   N +I  Y +     +A+ VF  +L  G 
Sbjct: 206 GTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLLNDGF 265

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           EP   +  +++  C     +E G+ +  L          +  NA++ MY   G   EA  
Sbjct: 266 EPTDYTFTNIISTCNGDLGVEEGKQLQGLAFKYGFLSETSVGNAIITMYGNSGMPKEAER 325

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE-GVRPNSLTIGSLLSACSSLY 327
           +F  MSE+++++WT++I+GY+ +G  + A+  F  +  E G+  +S  + ++L  CS   
Sbjct: 326 MFSSMSEKNLISWTALISGYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAILDCCSDCN 385

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L+ G  +H + +K    C+V V TAL+D+YAKC  ++ +  VF   S K    +NAILA
Sbjct: 386 NLELGLQIHGFVMKLGCACDVNVATALVDLYAKCEKLQSARIVFDHLSNKGIASFNAILA 445

Query: 388 GCVHN-GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           G + + G     + LF Q+ +  V+P+  T + LL   A  A L++  + H Y ++ GF 
Sbjct: 446 GFLESSGDEEDPMILFNQLRLAGVKPDMVTFSRLLSLLANQASLEKGRSFHAYTVKTGFD 505

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           + + V+  +I +Y+KCGS+E AH++F+ +  +D   + W+ +I+ Y +HG  + ++ LF+
Sbjct: 506 TNISVANSVISMYAKCGSIEDAHQMFNIMNCRDS--ISWNALISAYALHGQAQKSLFLFE 563

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           EM + G  P+E T  + L AC++ GL  +G+ LFN M   +      +HY C+ DLLGRA
Sbjct: 564 EMKRKGFDPDEFTILAILQACTYSGLWKDGICLFNLMEPKYGIKPLLEHYACMADLLGRA 623

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           G L EA D+I+  P   +  +W  L+  C +HGN+  G++A+K L +L P   G+Y+L+S
Sbjct: 624 GYLSEAMDIIKRSPFPKSTLLWRTLVNVCKLHGNLNFGKLASKHLLDLSPVEAGSYILVS 683

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            +Y++ +   +A  VR VM++   RK    S IE+ N
Sbjct: 684 NMYASEKMSDEAAKVRKVMNDLKFRKEAGSSWIEIDN 720



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 141/531 (26%), Positives = 260/531 (48%), Gaps = 23/531 (4%)

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
           LG A+H  ++  G   DTF GN ++ +Y+ F  +  A+KVFD M   + ++W +LI GY 
Sbjct: 85  LGQAVHSYLVKAGSQDDTFKGNNVLNLYVKFNRLDLAQKVFDRMRTRNTITWTSLIKGYL 144

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           ++   + A  +   M K G   +  +   +L AC    +  +G  IH  V      +N+ 
Sbjct: 145 EDNDFQSAFSIAGDMHKFGENFNEHTCTVILQACSSPDDRILGEQIHCFVIKSGFDENVF 204

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
              +L+ MY K G  + A  VFD M  +D+     MI  Y   G+   A+ +F+ +  +G
Sbjct: 205 VGTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLLNDG 264

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
             P   T  +++S C+    ++ G+ L     K     E  V  A+I MY    + K + 
Sbjct: 265 FEPTDYTFTNIISTCNGDLGVEEGKQLQGLAFKYGFLSETSVGNAIITMYGNSGMPKEAE 324

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT-LNSLLPAYAIL 427
           ++F+  S+K  + W A+++G   +G  +KAV+ F  +  E+    D+T L ++L   +  
Sbjct: 325 RMFSSMSEKNLISWTALISGYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAILDCCSDC 384

Query: 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
            +L+  + IH ++++ G    V V+T L+D+Y+KC  L+SA  +F    + +K I  ++ 
Sbjct: 385 NNLELGLQIHGFVMKLGCACDVNVATALVDLYAKCEKLQSARIVFDH--LSNKGIASFNA 442

Query: 488 IIAGY-GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
           I+AG+    G  E  + LF ++  +GV+P+ VTF+  L   ++   L++G     + ++ 
Sbjct: 443 ILAGFLESSGDEEDPMILFNQLRLAGVKPDMVTFSRLLSLLANQASLEKGRSFHAYTVKT 502

Query: 547 --HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
                 S A+    ++ +  + G +++A+ +   M  + + + W AL+ A  +HG     
Sbjct: 503 GFDTNISVANS---VISMYAKCGSIEDAHQMFNIMNCRDSIS-WNALISAYALHGQ---- 554

Query: 605 EVAAKWLFELEPE-----NPGNYVLLSKLYSAVRR--WKDAENVRDVMDEK 648
             A K LF  E       +P  + +L+ L +      WKD   + ++M+ K
Sbjct: 555 --AQKSLFLFEEMKRKGFDPDEFTILAILQACTYSGLWKDGICLFNLMEPK 603



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 167/348 (47%), Gaps = 4/348 (1%)

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           ++  +G+ +H  +       +    N ++++YVK   ++ A+ VFDRM  R+ +TWTS+I
Sbjct: 81  RDFLLGQAVHSYLVKAGSQDDTFKGNNVLNLYVKFNRLDLAQKVFDRMRTRNTITWTSLI 140

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
            GY  + D ++A  +   M   G   N  T   +L ACSS      G  +H + IK   +
Sbjct: 141 KGYLEDNDFQSAFSIAGDMHKFGENFNEHTCTVILQACSSPDDRILGEQIHCFVIKSGFD 200

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
             V V T+LI MY K     ++ +VF     K     N ++      G   KA+E+F+ +
Sbjct: 201 ENVFVGTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNL 260

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
           L +  EP D T  +++        +++   +     +YGFLS   V   +I +Y   G  
Sbjct: 261 LNDGFEPTDYTFTNIISTCNGDLGVEEGKQLQGLAFKYGFLSETSVGNAIITMYGNSGMP 320

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS-GVQPNEVTFTSAL 524
           + A ++FS   + +K+++ W+ +I+GY   G+G+ AV  F  +    G+  +    T+ L
Sbjct: 321 KEAERMFSS--MSEKNLISWTALISGYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAIL 378

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572
             CS    L+ GL +  F+++    C   +  T +VDL  +  +L  A
Sbjct: 379 DCCSDCNNLELGLQIHGFVMKLGCACD-VNVATALVDLYAKCEKLQSA 425


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  360 bits (924), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 207/560 (36%), Positives = 309/560 (55%), Gaps = 15/560 (2%)

Query: 111 NYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT--FVGNCLIAMYMNFGEVKAARKV 168
           ++ Y  +++ CT L   KL   +H  +   GF + T  F+   LI +Y   G++ +AR +
Sbjct: 25  HHFYDHLLQCCTSLTTLKL---IHSSLSTRGFLLHTPHFLAR-LIILYSKLGDLHSARTL 80

Query: 169 FDAMWEHSVVS--------WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLP 220
           FD    H             NT++  Y     + EA+ ++ +M + GV  +  +   VL 
Sbjct: 81  FDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLK 140

Query: 221 ACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT 280
            C        G ++H  V     G ++    ALVDMY KCG + +A  VFDRM  RDVV 
Sbjct: 141 VCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVC 200

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           WT+MI  Y        AL LF+ MQ EG   + +T  S+ SA   L   +   S+H + +
Sbjct: 201 WTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAV 260

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
                 +V V  +++ MYAKC  V+ +  VF R  ++  + WN++L+G   NG    A+ 
Sbjct: 261 LNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALS 320

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
           LF QM     +PN  T   ++ A + L        +H ++I         +   ++D+Y 
Sbjct: 321 LFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYM 380

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           KCG L++A ++F+   + ++D+  W+V+I+GYG+HGHG+ A+ LF  M   GV+PN++TF
Sbjct: 381 KCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITF 440

Query: 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
           TS L ACSH GL+DEG   F  M +         HY C+VD+LGRAG L+EA+ LI+ +P
Sbjct: 441 TSILSACSHAGLIDEGRKCFADMTK-LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIP 499

Query: 581 LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAEN 640
            +P+  VWGALL AC IHGN ELGE+AA  LF+LEPE+ G YVL+S +Y+A  +WK+ E 
Sbjct: 500 SRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEM 559

Query: 641 VRDVMDEKGLRKAPAHSLIE 660
           VR  M  +GL+K  A S+IE
Sbjct: 560 VRQNMKSRGLKKPAAFSVIE 579



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 162/507 (31%), Positives = 260/507 (51%), Gaps = 22/507 (4%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF--THLRSSLVRAY---GHVSNV 63
           LP   H    L+Q      S+   K +H+ + T G L    H  + L+  Y   G + + 
Sbjct: 21  LPSLHHFYDHLLQ---CCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSA 77

Query: 64  RILFDEMSER--------SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
           R LFD             +SFL NT+++ YA  G S++++ +++ M R+G    +N+TYP
Sbjct: 78  RTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMG-VGVNNFTYP 136

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
            V+K C        G  +HG+V+ TGF  D FV   L+ MY   GE+  A +VFD M   
Sbjct: 137 FVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIR 196

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
            VV W  +I+ Y +     +AL++F  M + G   D  + +SV  A G L +  M   +H
Sbjct: 197 DVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVH 256

Query: 236 EL-VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
              V  G +G +++  N++V MY KCG+V  ARLVFDRM ER+ ++W SM++GY  NG  
Sbjct: 257 GYAVLNGFIG-DVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRP 315

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
            +AL LF  MQ     PN +T   ++SACS L     GR LH + I   ++ +  +  A+
Sbjct: 316 TDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAI 375

Query: 355 IDMYAKCNLVKLSFQVF--ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           +DMY KC  +  + ++F      ++    WN +++G   +G  ++A+ELF +M VE VEP
Sbjct: 376 MDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEP 435

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           ND T  S+L A +    + +       + +      ++    ++D+  + G L  A ++ 
Sbjct: 436 NDITFTSILSACSHAGLIDEGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLI 495

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            +IP +  D  VW  ++    +HG+ E
Sbjct: 496 KKIPSRPSD-EVWGALLLACRIHGNTE 521


>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 831

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 200/609 (32%), Positives = 332/609 (54%), Gaps = 50/609 (8%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD-- 123
           +F+ + E +   + T+M   +Q     + L++F  MLR G    D+ +   ++  C    
Sbjct: 195 VFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKG-ICVDSVSLSTILVICAKGV 253

Query: 124 ----------LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
                     L+    G  +H   +  GF+ D  + N L+ MY   G++ +A  VF+ + 
Sbjct: 254 SFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLD 313

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
           +HSVVSWN +ISGY     +++AL  F  M   G EPD  + +++L AC           
Sbjct: 314 KHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTYINMLTAC----------- 362

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
                                   VK G V   R +FD MS   +++W ++++GY  + D
Sbjct: 363 ------------------------VKSGDVKVGRQIFDCMSSPSLISWNAILSGYNQSAD 398

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              A+ LF+ MQF+   P+  T+  +LS+C+ L  L+ G+ +HA + K     +V V ++
Sbjct: 399 HGEAVELFRKMQFQWQNPDRTTLAIILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASS 458

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           LI++Y+KC  +++S  VF++ S+   V WN+++AG   N L + A+  F++M      P+
Sbjct: 459 LINVYSKCGKMEVSKHVFSKLSELDVVCWNSMIAGFSINSLEQDALACFKRMRQFGFFPS 518

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
           + +  ++  + A L+ L Q   IH  +I+ G++  V V + L+++Y KCG + +A   F 
Sbjct: 519 EFSFATIASSCAKLSSLFQGQQIHAQIIKDGYVDNVFVGSSLVEMYCKCGDVGAARYYFD 578

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
            +P   K+IV W+ +I GY  +G+G  AVSL+K+M+ SG +P+++TF + L ACSH  L+
Sbjct: 579 MMP--GKNIVTWNEMIHGYAHNGYGLEAVSLYKDMISSGEKPDDITFVAVLTACSHSALV 636

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
           DEG+++F+ ML+  +   + DHYTCI+D LGR GR +E   ++ TMP K    VW  +L 
Sbjct: 637 DEGVEIFSSMLQKFEVVPKLDHYTCIIDCLGRVGRFNEVEVILDTMPYKDDTIVWEVVLS 696

Query: 594 ACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKA 653
           +C +H NV L + AA+ L  L P N   YVLL+ +YS++ RW DA+ VRD+M +  + K 
Sbjct: 697 SCRVHANVSLAKRAAEELHRLNPRNSAPYVLLANMYSSMGRWDDAQVVRDLMSDNQIHKD 756

Query: 654 PAHSLIEVR 662
           P +S  E +
Sbjct: 757 PGYSRSEFK 765



 Score =  224 bits (572), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 158/545 (28%), Positives = 259/545 (47%), Gaps = 57/545 (10%)

Query: 8   TLPKTTHLVIKLVQQYAATKSIAGTKQLHAF-IITSGPLFTHLRSSLVRAYGHVSNVRI- 65
           TL   T L   L+  Y+    I  T   H F  I    +F++  ++++ A+   +N++  
Sbjct: 35  TLFSDTFLCNHLIDLYSKCNQI--TSAHHVFDKIPHKNIFSY--NAILSAFCKSNNLQYA 90

Query: 66  --LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
             LF +M ER++   NT++    +NG    +L  +  M+      P + T+  V  AC  
Sbjct: 91  CRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDLMMVYESVKPSHITFATVFSACGG 150

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
           L     G   HG VL  GFD + +V N L+ MY   G  + A +VF+ + E + V++ T+
Sbjct: 151 LKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTKCGLNEDAFRVFEGIVEPNEVTFTTM 210

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY------------LKEIEMG 231
           + G  +    KE L +F  ML+ G+  D  S+ ++L  C              L     G
Sbjct: 211 MGGLSQTNQVKEGLELFRLMLRKGICVDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQG 270

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           + IH L       +++   N+L+DMY K G ++ A  VF+ + +  VV+W  MI+GY   
Sbjct: 271 KQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGNR 330

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
            D   AL  FQ MQ  G  P+ +T  ++L+AC     +K G                   
Sbjct: 331 CDSEKALECFQRMQCCGYEPDDVTYINMLTAC-----VKSGD------------------ 367

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
                       VK+  Q+F   S    + WNAIL+G   +    +AVELFR+M  +   
Sbjct: 368 ------------VKVGRQIFDCMSSPSLISWNAILSGYNQSADHGEAVELFRKMQFQWQN 415

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           P+  TL  +L + A L  L+    +H    + GF   V V++ LI++YSKCG +E +  +
Sbjct: 416 PDRTTLAIILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHV 475

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           FS++   + D+V W+ +IAG+ ++   + A++ FK M Q G  P+E +F +   +C+   
Sbjct: 476 FSKLS--ELDVVCWNSMIAGFSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLS 533

Query: 532 LLDEG 536
            L +G
Sbjct: 534 SLFQG 538



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 198/449 (44%), Gaps = 83/449 (18%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD---------------------- 170
           +H R+       DTF+ N LI +Y    ++ +A  VFD                      
Sbjct: 27  IHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFDKIPHKNIFSYNAILSAFCKSNN 86

Query: 171 ---------AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML-KSGVEPDCASVVSVLP 220
                     M E + VS NT+I+   KN Y ++AL  +D M+    V+P   +  +V  
Sbjct: 87  LQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDLMMVYESVKPSHITFATVFS 146

Query: 221 ACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT 280
           ACG LK++  GR  H LV       NI   NAL+ MY KCG   +A  VF+ + E + VT
Sbjct: 147 ACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTKCGLNEDAFRVFEGIVEPNEVT 206

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS------------LYY 328
           +T+M+ G +    V+  L LF+LM  +G+  +S+++ ++L  C+             L  
Sbjct: 207 FTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLSTILVICAKGVSFGVCDDSRGLST 266

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
             +G+ +H   +K   E ++ +  +L+DMYAK   +  +  VF    K   V WN +++G
Sbjct: 267 NAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISG 326

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
             +   + KA+E F++M     EP+D T  ++L A                         
Sbjct: 327 YGNRCDSEKALECFQRMQCCGYEPDDVTYINMLTACV----------------------- 363

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG-HGETAVSLFKE 507
                       K G ++   +IF    +    ++ W+ I++GY     HGE AV LF++
Sbjct: 364 ------------KSGDVKVGRQIFD--CMSSPSLISWNAILSGYNQSADHGE-AVELFRK 408

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           M      P+  T    L +C+  GLL+ G
Sbjct: 409 MQFQWQNPDRTTLAIILSSCAELGLLEAG 437



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 110/440 (25%), Positives = 200/440 (45%), Gaps = 56/440 (12%)

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR- 272
           +++++L +C   K +   ++IH  +    L  +    N L+D+Y KC  +  A  VFD+ 
Sbjct: 7   NLINLLQSCITNKSLSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFDKI 66

Query: 273 ------------------------------MSERDVVTWTSMINGYALNGDVRNALGLFQ 302
                                         M ER+ V+  ++I     NG  R AL  + 
Sbjct: 67  PHKNIFSYNAILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYD 126

Query: 303 LMQ-FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
           LM  +E V+P+ +T  ++ SAC  L  +  GR  H   +K   +  + V  AL+ MY KC
Sbjct: 127 LMMVYESVKPSHITFATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTKC 186

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
            L + +F+VF    +   V +  ++ G       ++ +ELFR ML + +  +  +L+++L
Sbjct: 187 GLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLSTIL 246

Query: 422 ------PAYAILADLQ------QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
                  ++ +  D +      Q   IH   +++GF   + +   L+D+Y+K G ++SA 
Sbjct: 247 VICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGDMDSAE 306

Query: 470 KIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            +F  +   DK  +V W+++I+GYG     E A+  F+ M   G +P++VT+ + L AC 
Sbjct: 307 NVFENL---DKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTYINMLTACV 363

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK---PTH 585
             G +  G  +F+ M     +      +  I+    ++    EA +L R M  +   P  
Sbjct: 364 KSGDVKVGRQIFDCM-----SSPSLISWNAILSGYNQSADHGEAVELFRKMQFQWQNPDR 418

Query: 586 AVWGALLGACVIHGNVELGE 605
                +L +C   G +E G+
Sbjct: 419 TTLAIILSSCAELGLLEAGK 438



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 143/291 (49%), Gaps = 8/291 (2%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAYGHVSNVRI--- 65
           P  T L I ++   A    +   KQ+HA     G     ++ SSL+  Y     + +   
Sbjct: 416 PDRTTLAI-ILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKH 474

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F ++SE     +N+++  ++ N    D+L  F  M + G + P  +++  +  +C  L+
Sbjct: 475 VFSKLSELDVVCWNSMIAGFSINSLEQDALACFKRMRQFGFF-PSEFSFATIASSCAKLS 533

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
               G  +H +++  G+  + FVG+ L+ MY   G+V AAR  FD M   ++V+WN +I 
Sbjct: 534 SLFQGQQIHAQIIKDGYVDNVFVGSSLVEMYCKCGDVGAARYYFDMMPGKNIVTWNEMIH 593

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLG 244
           GY  N Y  EA+ ++  M+ SG +PD  + V+VL AC +   ++ G  +   ++    + 
Sbjct: 594 GYAHNGYGLEAVSLYKDMISSGEKPDDITFVAVLTACSHSALVDEGVEIFSSMLQKFEVV 653

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSER-DVVTWTSMINGYALNGDV 294
             +  +  ++D   + G  NE  ++ D M  + D + W  +++   ++ +V
Sbjct: 654 PKLDHYTCIIDCLGRVGRFNEVEVILDTMPYKDDTIVWEVVLSSCRVHANV 704



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 120/262 (45%), Gaps = 37/262 (14%)

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           SL + +LL +C +   L   + +HA   +  L  +  +   LID+Y+KCN +  +  VF 
Sbjct: 5   SLNLINLLQSCITNKSLSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFD 64

Query: 373 RTSKKKTVPWNAILAG-C------------------------------VHNGLARKAVEL 401
           +   K    +NAIL+  C                              V NG  R+A++ 
Sbjct: 65  KIPHKNIFSYNAILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDT 124

Query: 402 FRQMLV-EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
           +  M+V E V+P+  T  ++  A   L D+      H  +++ GF S + VS  L+ +Y+
Sbjct: 125 YDLMMVYESVKPSHITFATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYT 184

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           KCG  E A ++F    I + + V ++ ++ G       +  + LF+ M++ G+  + V+ 
Sbjct: 185 KCGLNEDAFRVFE--GIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSVSL 242

Query: 521 TSALHACSHG---GLLDEGLDL 539
           ++ L  C+ G   G+ D+   L
Sbjct: 243 STILVICAKGVSFGVCDDSRGL 264



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 6/135 (4%)

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           +E     L +LL +      L  A  IH  + R+   S   +   LID+YSKC  + SAH
Sbjct: 1   MEVKSLNLINLLQSCITNKSLSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAH 60

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
            +F +IP   K+I  ++ I++ +    + + A  LF +M +     N V+  + +     
Sbjct: 61  HVFDKIP--HKNIFSYNAILSAFCKSNNLQYACRLFLQMPER----NTVSLNTIITTMVK 114

Query: 530 GGLLDEGLDLFNFML 544
            G   + LD ++ M+
Sbjct: 115 NGYERQALDTYDLMM 129


>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 210/609 (34%), Positives = 338/609 (55%), Gaps = 14/609 (2%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F  M +R    +NT++  Y +     ++++ F  M++ G   P   ++  V  A + + 
Sbjct: 56  VFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWG-IKPSPVSFVNVFPAISSVG 114

Query: 126 WRKLGIALHGRVLITG--FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
             K    L+G +L  G  +  D FV +  I+MY   G +   RKVFD+  E S   WNT+
Sbjct: 115 DFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTM 174

Query: 184 ISGYFKNAYAKEALVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           I G+ +N    E + +F   +K+     D  + +S L A   L+ + +G+ +H       
Sbjct: 175 IGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKNH 234

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
              ++   NA++ MY +C SV  +  VF++M E+DVV+W +MI+G+  NG     L L  
Sbjct: 235 TVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVY 294

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            MQ +G   +S+T+ SLLSA S+L   + G+  HA+ I+  ++ + + ++ LIDMYAK  
Sbjct: 295 EMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFDGM-DSYLIDMYAKSG 353

Query: 363 LVKLSFQVFARTS--KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           L+++S +VF   +   +    WNA++AG   NGL  +A   FR ML + + PN  TL S+
Sbjct: 354 LIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASI 413

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           LPA + L  +     +H   IRY     + V T L+D+YSK G++  A  +F++    ++
Sbjct: 414 LPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSS--ER 471

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
           + V ++ +I GYG HG GE A+SLF  M +SG+QP+ +TF + L ACS+ GL+DEGL +F
Sbjct: 472 NSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLRIF 531

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA--VWGALLGACVIH 598
             M  + +      HY C+ D+LGR GR+ EAY+ ++ +  +  H   +WG+LLGAC +H
Sbjct: 532 ESMKRDFKIQPSTAHYCCVADMLGRVGRVIEAYEFVKQLG-EEGHVIEIWGSLLGACRLH 590

Query: 599 GNVELGEVAAKWLFELEPEN--PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           G++ELGE  +  L E+   +   G  VLLS +Y+    W+  + +R  M EKGLRK    
Sbjct: 591 GHIELGEEVSNRLLEMNSVDRLAGYQVLLSNMYAEEANWETVDKLRKSMREKGLRKEVGC 650

Query: 657 SLIEVRNIL 665
           S I+   +L
Sbjct: 651 SWIDTGGLL 659



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 146/522 (27%), Positives = 255/522 (48%), Gaps = 41/522 (7%)

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           KVF  M +  V++WNT++S Y K     EA+  F  M+K G++P   S V+V PA   + 
Sbjct: 55  KVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSVG 114

Query: 227 EIEMGRMIHELV--AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           + +   +++ ++   G     ++   ++ + MY + G ++  R VFD   E+    W +M
Sbjct: 115 DFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTM 174

Query: 285 INGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN 343
           I G+  N      + LF Q M+ E    + +T  S L+A S L  L  G+ +HA+T+K +
Sbjct: 175 IGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKNH 234

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
               V V  A++ MY++CN V+ SF+VF +  +K  V WN +++G + NGL  + + L  
Sbjct: 235 TVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVY 294

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
           +M  +    +  T+ SLL A + L + +     H YLIR+G +    + + LID+Y+K G
Sbjct: 295 EMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHG-IKFDGMDSYLIDMYAKSG 353

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            +  + ++F    I+++D   W+ +IAGY  +G  E A   F+ M++  ++PN VT  S 
Sbjct: 354 LIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASI 413

Query: 524 LHACSHGGLLDEGLDL----FNFMLENH-------------------------QTCSRAD 554
           L ACS  G ++ G  L      + L+ +                         Q+  R  
Sbjct: 414 LPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSERNS 473

Query: 555 -HYTCIVDLLGRAGRLDEAYDLIRTMP---LKPTHAVWGALLGACVIHGNVELGE---VA 607
             YT ++   G+ G  + A  L  +M    ++P    + A+L AC   G V+ G     +
Sbjct: 474 VTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLRIFES 533

Query: 608 AKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
            K  F+++P +  +Y  ++ +   V R  +A      + E+G
Sbjct: 534 MKRDFKIQP-STAHYCCVADMLGRVGRVIEAYEFVKQLGEEG 574



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 230/443 (51%), Gaps = 12/443 (2%)

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
           R +FD   E+S+ ++NT++  + QN +  + + +FL  ++      D+ T+   + A + 
Sbjct: 157 RKVFDSCLEKSAEVWNTMIGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQ 216

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
           L    LG  +H   +     +   V N ++ MY     V+ + +VF+ M E  VVSWNT+
Sbjct: 217 LQCLGLGQQMHAFTMKNHTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTM 276

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243
           ISG+ +N   +E L++   M K G   D  +V S+L A   L+  E+G+  H  +   R 
Sbjct: 277 ISGFIQNGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLI--RH 334

Query: 244 GKNIAAWNA-LVDMYVKCGSVNEARLVFDR--MSERDVVTWTSMINGYALNGDVRNALGL 300
           G      ++ L+DMY K G +  ++ VF+   +  RD  TW ++I GY  NG V  A   
Sbjct: 335 GIKFDGMDSYLIDMYAKSGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFIT 394

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
           F+LM  + +RPN++T+ S+L ACSSL  +  G+ LH  +I+ +L+  + V TAL+DMY+K
Sbjct: 395 FRLMLEQNLRPNAVTLASILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSK 454

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
              +  +  VF ++S++ +V +  ++ G   +G+   A+ LF  M    ++P+  T  ++
Sbjct: 455 SGAINYAESVFTQSSERNSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAV 514

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTG----LIDIYSKCGSLESAHKIFSEIP 476
           L A +    + + + I   + R  F   ++ ST     + D+  + G +  A++   ++ 
Sbjct: 515 LSACSYAGLVDEGLRIFESMKR-DF--KIQPSTAHYCCVADMLGRVGRVIEAYEFVKQLG 571

Query: 477 IKDKDIVVWSVIIAGYGMHGHGE 499
            +   I +W  ++    +HGH E
Sbjct: 572 EEGHVIEIWGSLLGACRLHGHIE 594



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 181/326 (55%), Gaps = 14/326 (4%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTK------QLHAFIITSGPLFT-HLRSSLVRAYGHVSNV 63
           KT H ++  V   +A  +++  +      Q+HAF + +  + +  + ++++  Y   ++V
Sbjct: 196 KTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKNHTVLSVTVLNAILVMYSRCNSV 255

Query: 64  RI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKA 120
           +    +F++M E+    +NT++  + QNG   + L +   M + G +  D+ T   ++ A
Sbjct: 256 QTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVYEMQKQG-FIADSVTVTSLLSA 314

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA--MWEHSVV 178
            ++L  R++G   H  ++  G   D  + + LI MY   G ++ +++VF+   +      
Sbjct: 315 ASNLRNREIGKQTHAYLIRHGIKFDG-MDSYLIDMYAKSGLIRISQRVFENNNIQNRDQA 373

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           +WN +I+GY +N   ++A + F  ML+  + P+  ++ S+LPAC  L  I +G+ +H + 
Sbjct: 374 TWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLGSINLGKQLHGVS 433

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               L +NI    ALVDMY K G++N A  VF + SER+ VT+T+MI GY  +G   NAL
Sbjct: 434 IRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSSERNSVTYTTMILGYGQHGMGENAL 493

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACS 324
            LF  M+  G++P+++T  ++LSACS
Sbjct: 494 SLFHSMKKSGIQPDAITFVAVLSACS 519



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 129/284 (45%), Gaps = 11/284 (3%)

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           +  L +L  +VF    K+  + WN +++  V      +A+  FR M+   ++P+  +  +
Sbjct: 46  RSRLSRLLHKVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVN 105

Query: 420 LLPAYAILADLQQAMNIHCYLIRYG--FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           + PA + + D + A  ++  L++ G  + + + V +  I +Y++ G L+   K+F     
Sbjct: 106 VFPAISSVGDFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCL- 164

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLF-KEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
            +K   VW+ +I G+  +      V LF + M       ++VTF SAL A S    L  G
Sbjct: 165 -EKSAEVWNTMIGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLG 223

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
             +  F ++NH   S       I+ +  R   +  ++++   MP K     W  ++   +
Sbjct: 224 QQMHAFTMKNHTVLS-VTVLNAILVMYSRCNSVQTSFEVFEKMPEKDV-VSWNTMISGFI 281

Query: 597 IHGNVELGEVAAKWLFELEPEN-PGNYVLLSKLYSAVRRWKDAE 639
            +G   L E     ++E++ +    + V ++ L SA    ++ E
Sbjct: 282 QNG---LDEEGLMLVYEMQKQGFIADSVTVTSLLSAASNLRNRE 322


>gi|147801011|emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]
          Length = 711

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 198/542 (36%), Positives = 307/542 (56%), Gaps = 3/542 (0%)

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
           C D   +K G  +H  ++  GF  D  +   LI  Y+  G+V AAR VFD M E SVVSW
Sbjct: 161 CIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSW 220

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
             ++SGY +N   ++A V+F  M   GV+ +  +  S L AC  L+ ++MG  +   +  
Sbjct: 221 TAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQK 280

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
           GR  +N+   +ALVD + KCG + +A  +F  M ERDVV+W +MI GYA+ G   ++  +
Sbjct: 281 GRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCM 340

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
           F+ M   G+ P+  T+GS+L A +    L     +H    +       IV   LI+ YAK
Sbjct: 341 FRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAK 400

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL-ARKAVELFRQMLVEVVEPNDATLNS 419
              ++ +  +     KK      A++ G  H G+ +  A++LF++M    +  +D  L S
Sbjct: 401 NGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCS 460

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           +L   A LA       IH + ++Y     V +   LID+Y+K G +E A + F E+  ++
Sbjct: 461 MLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEM--EE 518

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
           K+++ W+ +I+GY  HG+G  AVSL+K+M   G +PN+VTF S L ACSH GL  EG + 
Sbjct: 519 KNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCEC 578

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           FN M+  +    RA+HY+C+VDL  R G L+EAY+L+  + +K   ++WGA+LGA  I+G
Sbjct: 579 FNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYG 638

Query: 600 NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
            + LG+ AA  LF ++PEN  NYV+L+ +YSA   W DA  +R +M+E+  +K   +S  
Sbjct: 639 YMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSFF 698

Query: 660 EV 661
           + 
Sbjct: 699 QA 700



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 147/522 (28%), Positives = 256/522 (49%), Gaps = 19/522 (3%)

Query: 35  LHAFIITSG-PLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGA 90
           +H  +IT+G     HL + L+  Y  V +V   R +FD M ERS   +  ++  Y+QNG 
Sbjct: 173 IHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGR 232

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
              +  +F  M   G    + +TY   ++ACT L    +GI + G +    F  + FV +
Sbjct: 233 FEKAFVLFSDMRHCG-VKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKS 291

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            L+  +   G+++ A  +F  M E  VVSWN +I GY    +A ++  +F  ML+ G+ P
Sbjct: 292 ALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVP 351

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           DC ++ SVL A      + +   IH ++     G        L++ Y K GS+  A+ + 
Sbjct: 352 DCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLR 411

Query: 271 DRMSERDVVTWTSMINGYALNGDVR-NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
             M ++D+ + T++I GYA  G    +AL LF+ M    +  + + + S+L+ C++L   
Sbjct: 412 KGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASF 471

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
             G  +HA+ +K     +V +  ALIDMYAK   ++ + + F    +K  + W ++++G 
Sbjct: 472 ALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGY 531

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY---LIRYGFL 446
             +G    AV L+++M  +  +PND T  SLL  +A       A    C+   + +Y   
Sbjct: 532 AKHGYGHMAVSLYKKMESKGFKPNDVTFLSLL--FACSHTGLTAEGCECFNNMVNKYNIK 589

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
              E  + ++D++++ G LE A+ +  +I IK  +  +W  I+    ++G+    +SL K
Sbjct: 590 PRAEHYSCMVDLFARQGLLEEAYNLLCKIDIK-HNASLWGAILGASSIYGY----MSLGK 644

Query: 507 EMVQS--GVQP-NEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           E   +   +QP N V +       S  GL D+   +   M E
Sbjct: 645 EAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEE 686


>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
 gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 207/619 (33%), Positives = 330/619 (53%), Gaps = 13/619 (2%)

Query: 52  SLVRAYGHVSNV---RILFDEMSER--SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGE 106
           +L R Y   + V   R +FDE+     +   ++ +++ YA N  +  +L ++  ML  G 
Sbjct: 40  NLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSG- 98

Query: 107 YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR 166
             P  YTYP V+KAC  L     G  +H  V  + F  D +V   L+  Y   GE++ A 
Sbjct: 99  VRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAI 158

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF-DWMLKSGVEPDCASVVSVLPACGYL 225
           KVFD M +  +V+WN +ISG+  +    + + +F D     G+ P+ +++V + PA G  
Sbjct: 159 KVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRA 218

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
             +  G+ +H          ++     ++D+Y K   +  AR VFD   +++ VTW++MI
Sbjct: 219 GALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMI 278

Query: 286 NGYALNGDVRNALGLF-QLMQFEGVR-PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN 343
            GY  N  ++ A  +F Q++  + V     + IG +L  C+    L  GR +H + +K  
Sbjct: 279 GGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAG 338

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
              ++ V+  +I  YAK   +  +F+ F+    K  + +N+++ GCV N    ++  LF 
Sbjct: 339 FILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFH 398

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
           +M    + P+  TL  +L A + LA L    + H Y + +G+     +   L+D+Y+KCG
Sbjct: 399 EMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNALMDMYTKCG 458

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            L+ A ++F    +  +DIV W+ ++ G+G+HG G+ A+SLF  M ++GV P+EVT  + 
Sbjct: 459 KLDVAKRVFD--TMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAI 516

Query: 524 LHACSHGGLLDEGLDLFNFMLE-NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
           L ACSH GL+DEG  LFN M   +     R DHY C+ DLL RAG LDEAYD +  MP +
Sbjct: 517 LSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFE 576

Query: 583 PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642
           P   V G LL AC  + N ELG   +K +  L  E   + VLLS  YSA  RW+DA  +R
Sbjct: 577 PDIRVLGTLLSACWTYKNAELGNEVSKKMQSL-GETTESLVLLSNTYSAAERWEDAARIR 635

Query: 643 DVMDEKGLRKAPAHSLIEV 661
            +  ++GL K P +S ++V
Sbjct: 636 MIQKKRGLLKTPGYSWVDV 654



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 133/520 (25%), Positives = 241/520 (46%), Gaps = 22/520 (4%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSN 62
           P+ +T P     V+K     A  ++I   K +H+ +  S      ++ ++LV  Y     
Sbjct: 101 PTKYTYP----FVLKAC---AGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGE 153

Query: 63  VRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           + +   +FDEM +R    +N ++  ++ +    D + +FL M R+   +P+  T   +  
Sbjct: 154 LEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFP 213

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           A       + G A+HG     GF  D  V   ++ +Y     +  AR+VFD  ++ + V+
Sbjct: 214 ALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVT 273

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSV-----LPACGYLKEIEMGRMI 234
           W+ +I GY +N   KEA  VF  ML   V  + A V  V     L  C    ++  GR +
Sbjct: 274 WSAMIGGYVENEMIKEAGEVFFQML---VNDNVAMVTPVAIGLILMGCARFGDLSGGRCV 330

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H          ++   N ++  Y K GS+ +A   F  +  +DV+++ S+I G  +N   
Sbjct: 331 HCYAVKAGFILDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRP 390

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             +  LF  M+  G+RP+  T+  +L+ACS L  L  G S H + +         +  AL
Sbjct: 391 EESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNTSICNAL 450

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           +DMY KC  + ++ +VF    K+  V WN +L G   +GL ++A+ LF  M    V P++
Sbjct: 451 MDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDE 510

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS--TGLIDIYSKCGSLESAHKIF 472
            TL ++L A +    + +   +   + R  F  +  +     + D+ ++ G L+ A+   
Sbjct: 511 VTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFV 570

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
           +++P  + DI V   +++    + + E    + K+M   G
Sbjct: 571 NKMPF-EPDIRVLGTLLSACWTYKNAELGNEVSKKMQSLG 609



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 11/168 (6%)

Query: 436 IHCYLIRYGF-LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
           IH +L++    LS   V   L  +Y+ C  +E A  +F EIP    + + W ++I  Y  
Sbjct: 21  IHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYAS 80

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR-- 552
           +   E A+ L+ +M+ SGV+P + T+   L AC+    +D+G      ++ +H  CS   
Sbjct: 81  NDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGK-----LIHSHVNCSDFA 135

Query: 553 ADHYTC--IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
            D Y C  +VD   + G L+ A  +   MP K     W A++    +H
Sbjct: 136 TDMYVCTALVDFYAKCGELEMAIKVFDEMP-KRDMVAWNAMISGFSLH 182


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 200/600 (33%), Positives = 320/600 (53%), Gaps = 72/600 (12%)

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H R+L +G   D ++   LIA Y N+     A  V  ++ + ++ S+++LI    K    
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
            +++ VF  M   G+ PD   + ++   C  L   ++G+ IH +     L  +     ++
Sbjct: 98  TQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSM 157

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVT--------------------------------- 280
             MY++CG + +AR VFDRMS++DVVT                                 
Sbjct: 158 FHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANI 217

Query: 281 --WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
             W  +++G+  +G  + A+ +FQ +   G  P+ +T+ S+L +      L  GR +H +
Sbjct: 218 VSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGY 277

Query: 339 TIKQNLECEVIVETALIDMYAK---------------------CN----------LVKLS 367
            IKQ L  +  V +A+IDMY K                     CN          LV  +
Sbjct: 278 VIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA 337

Query: 368 FQVFA----RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
            ++F     +T +   V W +I+AGC  NG   +A+ELFR+M V  V+PN  T+ S+LPA
Sbjct: 338 LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
              +A L    + H + +R   L  V V + LID+Y+KCG +  +  +F+ +P K+  +V
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKN--LV 455

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ ++ G+ MHG  +  +S+F+ ++++ ++P+ ++FTS L AC   GL DEG   F  M
Sbjct: 456 CWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMM 515

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
            E +    R +HY+C+V+LLGRAG+L EAYDLI+ MP +P   VWGALL +C +  NV+L
Sbjct: 516 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDL 575

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            E+AA+ LF LEPENPG YVLLS +Y+A   W + +++R+ M+  GL+K P  S I+V+N
Sbjct: 576 AEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKN 635



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 150/533 (28%), Positives = 254/533 (47%), Gaps = 77/533 (14%)

Query: 32  TKQLHAFIITSGPLFT-HLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           T Q HA I+ SG     ++ + L+ +Y +    ++  ++   + + + + +++++    +
Sbjct: 34  TTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTK 93

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
                 S+ +F  M   G   PD++  P + K C +L+  K+G  +H    ++G DMD F
Sbjct: 94  AKLFTQSIGVFSRMFSHG-LIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAF 152

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAM----------------------------------- 172
           V   +  MYM  G +  ARKVFD M                                   
Sbjct: 153 VQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSG 212

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
            E ++VSWN ++SG+ ++ Y KEA+V+F  +   G  PD  +V SVLP+ G  + + MGR
Sbjct: 213 IEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGR 272

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGS------------------------------ 262
           +IH  V    L K+    +A++DMY K G                               
Sbjct: 273 LIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNG 332

Query: 263 -VNEARLVFDRMSER----DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
            V++A  +F+   E+    +VV+WTS+I G A NG    AL LF+ MQ  GV+PN +TI 
Sbjct: 333 LVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIP 392

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           S+L AC ++  L  GRS H + ++ +L   V V +ALIDMYAKC  + LS  VF     K
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V WN+++ G   +G A++ + +F  ++   ++P+  +  SLL A   +    +     
Sbjct: 453 NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512

Query: 438 CYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
             +   YG    +E  + ++++  + G L+ A+ +  E+P  + D  VW  ++
Sbjct: 513 KMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPF-EPDSCVWGALL 564



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 135/269 (50%), Gaps = 11/269 (4%)

Query: 66  LFDEMS-ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           LF E + E +   + +++   AQNG   ++L++F  M ++    P++ T P ++ AC ++
Sbjct: 343 LFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREM-QVAGVKPNHVTIPSMLPACGNI 401

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
           A    G + HG  +      +  VG+ LI MY   G +  ++ VF+ M   ++V WN+L+
Sbjct: 402 AALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLM 461

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG----RMIHELVAG 240
           +G+  +  AKE + +F+ ++++ ++PD  S  S+L ACG +   + G    +M+ E    
Sbjct: 462 NGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYG- 520

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNA-L 298
             +   +  ++ +V++  + G + EA  +   M  E D   W +++N   L  +V  A +
Sbjct: 521 --IKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEI 578

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
              +L   E   P +  + S + A   ++
Sbjct: 579 AAEKLFHLEPENPGTYVLLSNIYAAKGMW 607


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 219/642 (34%), Positives = 345/642 (53%), Gaps = 16/642 (2%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMS--ERSSFLYNTVMKMYA 86
           K LH  +I SG PL + L +SL+  Y   G   N   +F  M   +R    ++ ++  +A
Sbjct: 59  KLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFA 118

Query: 87  QNGASHDSLKMFLGMLRLGE--YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG-FD 143
            N     +L  FL ML+       P+ Y +  ++++C++  +   G+A+   +L TG FD
Sbjct: 119 NNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFD 178

Query: 144 MDTFVGNCLIAMYMNFG-EVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
               VG  LI M+   G ++++AR VFD M   ++V+W  +I+ Y +     +A+ +F  
Sbjct: 179 SHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCR 238

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           +L S   PD  ++ S+L AC  L+   +G+ +H  V    L  ++     LVDMY K  +
Sbjct: 239 LLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAA 298

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           V  +R +F+ M   +V++WT++I+GY  +   + A+ LF  M    V PN  T  S+L A
Sbjct: 299 VENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKA 358

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           C+SL     G+ LH  TIK  L     V  +LI+MYA+   ++ + + F    +K  + +
Sbjct: 359 CASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISY 418

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           N        N  A  + E F   +    V  +  T   LL   A +  + +   IH  ++
Sbjct: 419 NTAADA---NAKALDSDESFNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIV 475

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           + GF + + ++  LI +YSKCG+ E+A ++F+++  ++  ++ W+ II+G+  HG    A
Sbjct: 476 KSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRN--VITWTSIISGFAKHGFATKA 533

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561
           + LF EM++ GV+PNEVT+ + L ACSH GL+DE    FN M  NH    R +HY C+VD
Sbjct: 534 LELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVD 593

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGN 621
           LLGR+G L EA + I +MP      VW   LG+C +H N +LGE AAK + E EP +P  
Sbjct: 594 LLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPAT 653

Query: 622 YVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           Y+LLS LY++  RW D   +R  M +K L K   +S IEV N
Sbjct: 654 YILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDN 695



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 192/365 (52%), Gaps = 7/365 (1%)

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           +++KAC      +LG  LH +++ +G  +D+ + N LI +Y   G+ + A  +F  M  H
Sbjct: 44  LLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHH 103

Query: 176 --SVVSWNTLISGYFKNAYAKEALVVFDWMLKSG---VEPDCASVVSVLPACGYLKEIEM 230
              +VSW+ +IS +  N+    AL+ F  ML+     + P+     ++L +C        
Sbjct: 104 KRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTT 163

Query: 231 GRMIHE-LVAGGRLGKNIAAWNALVDMYVKCG-SVNEARLVFDRMSERDVVTWTSMINGY 288
           G  I   L+  G    ++    AL+DM+ K G  +  AR+VFD+M  +++VTWT MI  Y
Sbjct: 164 GLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRY 223

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
           +  G + +A+ LF  +      P+  T+ SLLSAC  L +   G+ LH+W I+  L  +V
Sbjct: 224 SQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDV 283

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            V   L+DMYAK   V+ S ++F        + W A+++G V +   ++A++LF  ML  
Sbjct: 284 FVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHG 343

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            V PN  T +S+L A A L D      +H   I+ G  ++  V   LI++Y++ G++E A
Sbjct: 344 HVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECA 403

Query: 469 HKIFS 473
            K F+
Sbjct: 404 RKAFN 408



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 18/196 (9%)

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL-------ADLQQAMNIHC 438
           L+ C+ + +  +A +L  + L + +   D T  S L   ++L        +L+    +H 
Sbjct: 4   LSLCLPSSIYLQAKDLKFESLRKAISRLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHH 63

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
            LI  G      +   LI +YSKCG  E+A  IF  +    +D+V WS II+ +  +   
Sbjct: 64  KLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSME 123

Query: 499 ETAVSLFKEMVQSG---VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
             A+  F  M+Q     + PNE  FT+ L +CS+      GL +F F+L+        D 
Sbjct: 124 SRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKT----GYFDS 179

Query: 556 YTCI----VDLLGRAG 567
           + C+    +D+  + G
Sbjct: 180 HVCVGCALIDMFTKGG 195


>gi|449439735|ref|XP_004137641.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
 gi|449514868|ref|XP_004164502.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 601

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 208/593 (35%), Positives = 329/593 (55%), Gaps = 11/593 (1%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           ++++  +L+N  ++     G    SL+ +   +R    + +N+T+P+++KAC +LA    
Sbjct: 13  ITKKPLYLWNLTIRSSVNGGFFAQSLETY-SFMRHSGIHGNNFTFPLLLKACANLASIGD 71

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  LH  ++  GF+ D FV   L+ MY  F  ++A+R+VFD     SV+SWN++I+ Y +
Sbjct: 72  GTMLHAHLIHVGFESDVFVQTSLVDMYSKFSNLRASRQVFDETSTRSVISWNSMIAAYSR 131

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVL-----PACGYLKEIEMGRMIHELVAGGRLG 244
           +    EAL +F  ML  G EP+ ++ VS+L     P  G L +   GR++H  +   +L 
Sbjct: 132 SFRVNEALKLFREMLGGGFEPNSSTFVSLLSGFADPTHGSLFQ---GRLLHGCLTKFQLH 188

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            +    N+LV MYV  G ++ A  VF  +SE+ V++WT M+ GY   G V      F  M
Sbjct: 189 DDTPVENSLVQMYVNFGQIDSACSVFYAISEKTVISWTIMLGGYLKAGAVAKVFETFSQM 248

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
           +   V  +      ++S+C  L  L  G SLH+  +K  L+ E  +   LI MY+KC  +
Sbjct: 249 RQNNVVLDKFVFVDIISSCIQLGNLFLGSSLHSLLLKTGLKYEDPIGCLLISMYSKCGDL 308

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
             +  VF   S+K    W ++++G  + G  R+A+ LF       V PN A L + + A 
Sbjct: 309 LSARAVFDLLSEKSIYSWTSMISGYANAGYPREALSLFSMATQNNVRPNGAMLATAISAC 368

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           A L  L     I  ++ + G  S  +VST LI +Y K GS+E A K+F+ +    +D+  
Sbjct: 369 ADLGSLSMRREIEAFIQQDGLASDSQVSTSLIHLYCKFGSIEKAEKVFNSMI--HRDLAA 426

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           WS ++ GY +HG GE  ++LF EM +SG++P+   + S L ACSH GL+++GL+ F  M 
Sbjct: 427 WSSMMNGYAVHGMGEKTMNLFHEMQRSGIKPDGSVYASILLACSHSGLVEDGLEHFKNMQ 486

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
            ++       HYTC+VD+L RAG L+ A + I+ MP +     W   L AC  + +VELG
Sbjct: 487 LDYGIVPTMVHYTCLVDILSRAGHLELALNTIQEMPTQFQSQAWAPFLSACRTYCDVELG 546

Query: 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           EVA + L    P NP N+VL++ LY+++ +WK+A  VR ++D+KGL K P  S
Sbjct: 547 EVANRCLLSSNPRNPVNHVLMANLYTSMGKWKEAAKVRSLIDDKGLVKEPGCS 599



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 145/477 (30%), Positives = 240/477 (50%), Gaps = 28/477 (5%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNVRI---LFDEMSERS 74
           L++  A   SI     LHA +I  G      +++SLV  Y   SN+R    +FDE S RS
Sbjct: 59  LLKACANLASIGDGTMLHAHLIHVGFESDVFVQTSLVDMYSKFSNLRASRQVFDETSTRS 118

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL--GIA 132
              +N+++  Y+++   +++LK+F  ML  G + P++ T+  ++    D     L  G  
Sbjct: 119 VISWNSMIAAYSRSFRVNEALKLFREMLG-GGFEPNSSTFVSLLSGFADPTHGSLFQGRL 177

Query: 133 LHGRVLITGFDM--DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           LHG   +T F +  DT V N L+ MY+NFG++ +A  VF A+ E +V+SW  ++ GY K 
Sbjct: 178 LHG--CLTKFQLHDDTPVENSLVQMYVNFGQIDSACSVFYAISEKTVISWTIMLGGYLKA 235

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
               +    F  M ++ V  D    V ++ +C     I++G +         L K    +
Sbjct: 236 GAVAKVFETFSQMRQNNVVLDKFVFVDIISSC-----IQLGNLFLGSSLHSLLLKTGLKY 290

Query: 251 NA-----LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
                  L+ MY KCG +  AR VFD +SE+ + +WTSMI+GYA  G  R AL LF +  
Sbjct: 291 EDPIGCLLISMYSKCGDLLSARAVFDLLSEKSIYSWTSMISGYANAGYPREALSLFSMAT 350

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
              VRPN   + + +SAC+ L  L   R + A+  +  L  +  V T+LI +Y K   ++
Sbjct: 351 QNNVRPNGAMLATAISACADLGSLSMRREIEAFIQQDGLASDSQVSTSLIHLYCKFGSIE 410

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + +VF     +    W++++ G   +G+  K + LF +M    ++P+ +   S+L A +
Sbjct: 411 KAEKVFNSMIHRDLAAWSSMMNGYAVHGMGEKTMNLFHEMQRSGIKPDGSVYASILLACS 470

Query: 426 ---ILAD-LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
              ++ D L+   N+    + YG +  +   T L+DI S+ G LE A     E+P +
Sbjct: 471 HSGLVEDGLEHFKNMQ---LDYGIVPTMVHYTCLVDILSRAGHLELALNTIQEMPTQ 524


>gi|302774170|ref|XP_002970502.1| hypothetical protein SELMODRAFT_93612 [Selaginella moellendorffii]
 gi|300162018|gb|EFJ28632.1| hypothetical protein SELMODRAFT_93612 [Selaginella moellendorffii]
          Length = 825

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 197/602 (32%), Positives = 341/602 (56%), Gaps = 21/602 (3%)

Query: 41  TSGPLFTHLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKM 97
           +S  + T L ++L+  YG    + + R +F  M ER    +N ++  Y Q+G   +++ +
Sbjct: 230 SSSAMETPLCNALITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLL 289

Query: 98  FLGMLRLGEYNPDNYTYPIVI------KACTDLAWRKLGIALHGRVLITGFDMDTFVGNC 151
           +  ML+ G   PD  T+  ++      +A TD+   KL   +H  ++ +G  ++  +G  
Sbjct: 290 YQLMLQEG-CKPDKVTFVALLTMSNGPEALTDV---KL---VHSHIVESGVSINIALGTA 342

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           L+AMY     ++  R +F+ M + +V+SWN +++ Y K+   ++A+ + ++M   GV+PD
Sbjct: 343 LVAMYSKCESLEDTRWLFEKMPQRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPD 402

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFD 271
             + V +L  C    ++++GR +H  +A GR   ++  WN+L++MY +CG V +A +VFD
Sbjct: 403 NVTCVGLLNVCTGSADLKLGRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQAEMVFD 462

Query: 272 RMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKR 331
            + +R+V++WT+M+  Y+       AL LF  +   GV+P  +T    L AC     L +
Sbjct: 463 GILQRNVISWTAMLTAYSRQNRQDMALLLFHAIHLSGVKPTCITFLEALDACVGAEALGK 522

Query: 332 GRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCV 390
           GR +H+  ++   + +V + +AL+ MY +C  ++ +   F  T  +K  V W+A++A  V
Sbjct: 523 GRLVHSCAVQSGNDTDVSLGSALVAMYGRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFV 582

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF-LSVV 449
            +G  R+ ++  R M  + ++ + AT  S L A + LADL++   IH Y+    F     
Sbjct: 583 QHGQDREGLQHLRFMQQQGLDMSPATFASTLSACSNLADLREGKRIHSYVRERRFDTEAA 642

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            V+  L+ +Y KCGSL+ A ++F     + +DI+ W+ II+GY  HG    AV LF  M 
Sbjct: 643 TVTNSLVTMYGKCGSLDCAREVFE--TSRRQDIICWNAIISGYAQHGQTRDAVELFHRMQ 700

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           Q GV P+ VTF   L  CSHGGLLDEG+  +  M+E     ++ D+Y C++DLLGRAG+L
Sbjct: 701 QEGVTPDPVTFVCILSVCSHGGLLDEGVYAYASMVELGLEPTQ-DNYACVIDLLGRAGKL 759

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629
            EA + I+++  +P      +LL +C  HG+V+ G  AA+ + E++P +   +V+LS +Y
Sbjct: 760 QEAEEFIQSLGTRPAIETLTSLLSSCKSHGDVQRGRRAAEGIMEMDPRSSSAHVVLSSIY 819

Query: 630 SA 631
           SA
Sbjct: 820 SA 821



 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 159/580 (27%), Positives = 294/580 (50%), Gaps = 8/580 (1%)

Query: 26  TKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTV 81
           ++++   K +H  I  SG      L ++LV  YG    V + + +FD M  R+   +  +
Sbjct: 114 SQALPAGKLIHGLIAQSGHQCDLILENALVSMYGSCGSVDDAKRVFDAMPARNVITWTAM 173

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           +  +A+      + K+F  ++ L  +  +  TY  +++AC+   + ++GI LH R + + 
Sbjct: 174 IGAHAETSLEQ-AFKVFR-LMELEGFKSNFVTYVTLVQACSKPEFLEVGIILHMRSVESS 231

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
             M+T + N LI MY   G ++ AR +F +M E  +++WN LI+ Y ++ + +EA++++ 
Sbjct: 232 SAMETPLCNALITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQ 291

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
            ML+ G +PD  + V++L      + +   +++H  +    +  NIA   ALV MY KC 
Sbjct: 292 LMLQEGCKPDKVTFVALLTMSNGPEALTDVKLVHSHIVESGVSINIALGTALVAMYSKCE 351

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
           S+ + R +F++M +R+V++W  M+  YA +G  R A+ + + MQ +GV+P+++T   LL+
Sbjct: 352 SLEDTRWLFEKMPQRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLN 411

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
            C+    LK GR +H W  +   E ++I+  +L++MY +C  V+ +  VF    ++  + 
Sbjct: 412 VCTGSADLKLGRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQAEMVFDGILQRNVIS 471

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           W A+L           A+ LF  + +  V+P   T    L A      L +   +H   +
Sbjct: 472 WTAMLTAYSRQNRQDMALLLFHAIHLSGVKPTCITFLEALDACVGAEALGKGRLVHSCAV 531

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           + G  + V + + L+ +Y +CGS+  A   F +  ++ K+ V WS +IA +  HG     
Sbjct: 532 QSGNDTDVSLGSALVAMYGRCGSIRDAKACFDDTEVR-KNHVTWSAMIAAFVQHGQDREG 590

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561
           +   + M Q G+  +  TF S L ACS+   L EG  + +++ E       A     +V 
Sbjct: 591 LQHLRFMQQQGLDMSPATFASTLSACSNLADLREGKRIHSYVRERRFDTEAATVTNSLVT 650

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
           + G+ G LD A ++  T   +     W A++     HG  
Sbjct: 651 MYGKCGSLDCAREVFET-SRRQDIICWNAIISGYAQHGQT 689



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 150/592 (25%), Positives = 293/592 (49%), Gaps = 9/592 (1%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFII-TSGPLFTHLRSSLVRAYGHVSNVRI---LFDEMSE 72
           ++L+Q     K++   ++LH+ I+  S      L + L+  YG   ++      F+ MS 
Sbjct: 4   VRLLQACPKLKALDIARRLHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMSY 63

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           ++ + +  ++ + A +     ++ +   ML  G   PDN T    + +C        G  
Sbjct: 64  KNVYTWTAIIGVCAHHHCHSLAIILLRQMLLEG-VKPDNITLLAALTSCETSQALPAGKL 122

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +HG +  +G   D  + N L++MY + G V  A++VFDAM   +V++W  +I  + + + 
Sbjct: 123 IHGLIAQSGHQCDLILENALVSMYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHAETSL 182

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            ++A  VF  M   G + +  + V+++ AC   + +E+G ++H               NA
Sbjct: 183 -EQAFKVFRLMELEGFKSNFVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCNA 241

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+ MY +CG + +AR +F  M ERD++ W ++I  Y  +G V  A+ L+QLM  EG +P+
Sbjct: 242 LITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPD 301

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            +T  +LL+  +    L   + +H+  ++  +   + + TAL+ MY+KC  ++ +  +F 
Sbjct: 302 KVTFVALLTMSNGPEALTDVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFE 361

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           +  ++  + WN ++     +GL RKAV++   M ++ V+P++ T   LL      ADL+ 
Sbjct: 362 KMPQRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKL 421

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              +H ++      + + +   L+++Y +CG +E A  +F    I  ++++ W+ ++  Y
Sbjct: 422 GRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQAEMVFD--GILQRNVISWTAMLTAY 479

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
                 + A+ LF  +  SGV+P  +TF  AL AC     L +G  + +  +++    + 
Sbjct: 480 SRQNRQDMALLLFHAIHLSGVKPTCITFLEALDACVGAEALGKGRLVHSCAVQSGND-TD 538

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
               + +V + GR G + +A        ++  H  W A++ A V HG    G
Sbjct: 539 VSLGSALVAMYGRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDREG 590



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 157/572 (27%), Positives = 271/572 (47%), Gaps = 38/572 (6%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           Y  +++AC  L    +   LH +++    D   F+GN LI  Y     +  A + F+ M 
Sbjct: 3   YVRLLQACPKLKALDIARRLHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMS 62

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
             +V +W  +I     +     A+++   ML  GV+PD  ++++ L +C   + +  G++
Sbjct: 63  YKNVYTWTAIIGVCAHHHCHSLAIILLRQMLLEGVKPDNITLLAALTSCETSQALPAGKL 122

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           IH L+A      ++   NALV MY  CGSV++A+ VFD M  R+V+TWT+MI  +A    
Sbjct: 123 IHGLIAQSGHQCDLILENALVSMYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHA-ETS 181

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
           +  A  +F+LM+ EG + N +T  +L+ ACS   +L+ G  LH  +++ +   E  +  A
Sbjct: 182 LEQAFKVFRLMELEGFKSNFVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCNA 241

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           LI MY +C  ++ +  +F+   ++  + WNA++     +G   +AV L++ ML E  +P+
Sbjct: 242 LITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPD 301

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
             T  +LL        L     +H +++  G    + + T L+ +YSKC SLE    +F 
Sbjct: 302 KVTFVALLTMSNGPEALTDVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFE 361

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS----- 528
           ++P   ++++ W+V++  Y  HG G  AV + + M   GV+P+ VT    L+ C+     
Sbjct: 362 KMP--QRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADL 419

Query: 529 ------HG----GLLDEGLDLFNFMLENHQTCSRADH---------------YTCIVDLL 563
                 HG    G  +  L L+N +L  +  C   +                +T ++   
Sbjct: 420 KLGRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTAY 479

Query: 564 GRAGRLDEAYDLIRTMPL---KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620
            R  R D A  L   + L   KPT   +   L ACV  G   LG+        ++  N  
Sbjct: 480 SRQNRQDMALLLFHAIHLSGVKPTCITFLEALDACV--GAEALGKGRLVHSCAVQSGNDT 537

Query: 621 NYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
           +  L S L +   R     + +   D+  +RK
Sbjct: 538 DVSLGSALVAMYGRCGSIRDAKACFDDTEVRK 569


>gi|125561353|gb|EAZ06801.1| hypothetical protein OsI_29045 [Oryza sativa Indica Group]
          Length = 696

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 226/645 (35%), Positives = 341/645 (52%), Gaps = 27/645 (4%)

Query: 36  HAFIITSGPLFTHLRSSLVRAYGHVS-----NVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           HA ++ SG       + L+ AY   S       R +FDE+  R    +N ++  +A +GA
Sbjct: 14  HASLLKSGFAAPTPWNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAHAASGA 73

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             ++ ++   M   G    + +     +++        +G  L    L +G   + F  +
Sbjct: 74  HPEAWRLLRAMHAQG-LASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAAS 132

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            L+ +Y   G V+ AR+VFD M E + VSWN LI+GY ++     AL +F  M + G+ P
Sbjct: 133 ALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLVP 192

Query: 211 DCASVVSVL-----PACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
           D A+  S+L     P+C  + ++  G+++     G  LG  +   NA +  Y +CGS+ +
Sbjct: 193 DEATFASLLTAVEGPSCFLMHQLH-GKIVK---YGSALG--LTVLNAAITAYSQCGSLKD 246

Query: 266 ARLVFDRMSE-RDVVTWTSMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSAC 323
           +R +FD + + RD+++W +M+  Y  NG    A+  F ++MQ  GV P+  +  S++S+C
Sbjct: 247 SRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSC 306

Query: 324 SSLYYLK-RGRSLHAWTIKQNLECEVIVETALIDMYAKCN---LVKLSFQVFARTSKKKT 379
           S   +   +GR +H   IK  LE    V  ALI MY + N   +++ +++ F     K T
Sbjct: 307 SEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDT 366

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           V WN++L G   +GL+  A++ FR M  E V  ++   ++ L + + LA LQ    IH  
Sbjct: 367 VSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGL 426

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV-WSVIIAGYGMHGHG 498
           +I  GF S   VS+ LI +YSK G ++ A K F E    DK   V W+ +I GY  HG  
Sbjct: 427 VIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEE---ADKSSSVPWNAMIFGYAQHGQA 483

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
           E    LF EM+Q     + +TF   + +CSH GL+DEG ++ N M   +    R +HY C
Sbjct: 484 ENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYAC 543

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
            VDL GRAG+LD+A  LI +MP +P   VW  LLGAC IHGNVEL    A  LF  EP  
Sbjct: 544 GVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQ 603

Query: 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
              YVLLS +YS +  W D   V+ VM ++GL K P  SLIEV+N
Sbjct: 604 HSTYVLLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSLIEVKN 648


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 204/640 (31%), Positives = 328/640 (51%), Gaps = 40/640 (6%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGM---------------- 101
           G V++ R LFD+M ++  + +NT++  Y   G   ++ ++F G                 
Sbjct: 79  GQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYC 138

Query: 102 --------------LRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
                         +RL  +    +T   V++ C+ L   + G  +HG V+  GF+ + F
Sbjct: 139 KFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVF 198

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMW--EHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
           V   L+ MY     V  A  +F  +     + V W  +++GY +N    +A+  F +M  
Sbjct: 199 VVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHA 258

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
            GVE +  +  ++L AC  +     G  +H  +     G N+   +ALVDMY KCG +  
Sbjct: 259 QGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKN 318

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC-- 323
           A+ + + M + DVV+W S++ G+  +G    AL LF+ M    ++ +  T  S+L+ C  
Sbjct: 319 AKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVV 378

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
            S+      +S+H   IK   E   +V  AL+DMYAK   +  ++ VF +  +K  + W 
Sbjct: 379 GSI----NPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWT 434

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           +++ G   N    +++++F  M V  V P+   + S+L A A L  L+    +H   I+ 
Sbjct: 435 SLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKS 494

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
           G      V   L+ +Y+KCG L+ A  IF  + ++ KD++ W+ II GY  +G G  ++ 
Sbjct: 495 GLRWSQSVYNSLVAMYAKCGCLDDADAIF--VSMQVKDVITWTAIIVGYAQNGKGRNSLK 552

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563
            +  MV SG +P+ +TF   L ACSH GL+DEG   F  M + +      +HY C++DL 
Sbjct: 553 FYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLF 612

Query: 564 GRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623
           GR+G+LDEA  L+  M +KP   VW +LL AC +H N+EL E AA  LFELEP N   YV
Sbjct: 613 GRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYV 672

Query: 624 LLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +LS +YSA R+W D   +R +M  KG+ K P  S +E+ +
Sbjct: 673 MLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINS 712



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 151/528 (28%), Positives = 254/528 (48%), Gaps = 56/528 (10%)

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
           S  S +  N ++   +++G  +D+ K+F  M +  EY                 +W    
Sbjct: 61  SYESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEY-----------------SW---- 99

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
                              N +I+ Y+N G +  AR++FD     S ++W+++ISGY K 
Sbjct: 100 -------------------NTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKF 140

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
               EA  +F  M   G +    ++ SVL  C  L  I+ G MIH  V       N+   
Sbjct: 141 GCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVV 200

Query: 251 NALVDMYVKCGSVNEARLVFD--RMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             LVDMY KC  V+EA  +F       ++ V WT+M+ GYA NGD   A+  F+ M  +G
Sbjct: 201 TGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQG 260

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           V  N  T  ++L+ACSS+     G  +H + +K      V V++AL+DMYAKC  +K + 
Sbjct: 261 VECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAK 320

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
            +         V WN+++ G V +GL  +A+ LF+ M    ++ +D T  S+L    + +
Sbjct: 321 NMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGS 380

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
                 ++H  +I+ GF +   VS  L+D+Y+K G ++ A+ +F ++   +KD++ W+ +
Sbjct: 381 --INPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKML--EKDVISWTSL 436

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG----LDLFNFML 544
           + GY  +   E ++ +F +M  +GV P++    S L AC+   LL+ G    LD     L
Sbjct: 437 VTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGL 496

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
              Q+      Y  +V +  + G LD+A  +  +M +K     W A++
Sbjct: 497 RWSQSV-----YNSLVAMYAKCGCLDDADAIFVSMQVKDV-ITWTAII 538



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 120/396 (30%), Positives = 193/396 (48%), Gaps = 45/396 (11%)

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN----- 286
           R IH   A     ++I   N L++   K G VN+AR +FD+M ++D  +W +MI+     
Sbjct: 52  RSIHTTTAASY--ESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNV 109

Query: 287 --------------------------GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
                                     GY   G    A  LF+ M+ EG + +  T+GS+L
Sbjct: 110 GRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVL 169

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA--RTSKKK 378
             CSSL  ++ G  +H + +K   E  V V T L+DMYAKC  V  +  +F      +K 
Sbjct: 170 RVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKN 229

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
            V W A++ G   NG   KAVE FR M  + VE N  T  ++L A + +        +H 
Sbjct: 230 HVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHG 289

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           ++++ GF S V V + L+D+Y+KCG L++A  +     ++D D+V W+ ++ G+  HG  
Sbjct: 290 FIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLE--TMEDDDVVSWNSLMVGFVRHGLE 347

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD--LFNFMLENHQTCSRADHY 556
           E A+ LFK M    ++ ++ TF S L+ C  G +  + +   +     EN++  S A   
Sbjct: 348 EEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNA--- 404

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
             +VD+  + G +D AY +   M L+     W +L+
Sbjct: 405 --LVDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLV 437


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 200/600 (33%), Positives = 320/600 (53%), Gaps = 72/600 (12%)

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H R+L +G   D ++   LIA Y N+     A  V  ++ + ++ S+++LI    K    
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
            +++ VF  M   G+ PD   + ++   C  L   ++G+ IH +     L  +     ++
Sbjct: 98  TQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSM 157

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVT--------------------------------- 280
             MY++CG + +AR VFDRMS++DVVT                                 
Sbjct: 158 FHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANI 217

Query: 281 --WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
             W  +++G+  +G  + A+ +FQ +   G  P+ +T+ S+L +      L  GR +H +
Sbjct: 218 VSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGY 277

Query: 339 TIKQNLECEVIVETALIDMYAK---------------------CN----------LVKLS 367
            IKQ L  +  V +A+IDMY K                     CN          LV  +
Sbjct: 278 VIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKA 337

Query: 368 FQVFA----RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
            ++F     +T +   V W +I+AGC  NG   +A+ELFR+M V  V+PN  T+ S+LPA
Sbjct: 338 LEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPA 397

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
              +A L    + H + +R   L  V V + LID+Y+KCG +  +  +F+ +P K+  +V
Sbjct: 398 CGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKN--LV 455

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ ++ G+ MHG  +  +S+F+ ++++ ++P+ ++FTS L AC   GL DEG   F  M
Sbjct: 456 CWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMM 515

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
            E +    R +HY+C+V+LLGRAG+L EAYDLI+ MP +P   VWGALL +C +  NV+L
Sbjct: 516 SEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDL 575

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            E+AA+ LF LEPENPG YVLLS +Y+A   W + +++R+ M+  GL+K P  S I+V+N
Sbjct: 576 AEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKN 635



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 150/533 (28%), Positives = 254/533 (47%), Gaps = 77/533 (14%)

Query: 32  TKQLHAFIITSGPLFT-HLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           T Q HA I+ SG     ++ + L+ +Y +    ++  ++   + + + + +++++    +
Sbjct: 34  TTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTK 93

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
                 S+ +F  M   G   PD++  P + K C +L+  K+G  +H    ++G DMD F
Sbjct: 94  AKLFTQSIGVFSRMFSHGLI-PDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAF 152

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAM----------------------------------- 172
           V   +  MYM  G +  ARKVFD M                                   
Sbjct: 153 VQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSG 212

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
            E ++VSWN ++SG+ ++ Y KEA+V+F  +   G  PD  +V SVLP+ G  + + MGR
Sbjct: 213 IEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGR 272

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGS------------------------------ 262
           +IH  V    L K+    +A++DMY K G                               
Sbjct: 273 LIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNG 332

Query: 263 -VNEARLVFDRMSER----DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
            V++A  +F+   E+    +VV+WTS+I G A NG    AL LF+ MQ  GV+PN +TI 
Sbjct: 333 LVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIP 392

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           S+L AC ++  L  GRS H + ++ +L   V V +ALIDMYAKC  + LS  VF     K
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V WN+++ G   +G A++ + +F  ++   ++P+  +  SLL A   +    +     
Sbjct: 453 NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512

Query: 438 CYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
             +   YG    +E  + ++++  + G L+ A+ +  E+P  + D  VW  ++
Sbjct: 513 KMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPF-EPDSCVWGALL 564



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 135/269 (50%), Gaps = 11/269 (4%)

Query: 66  LFDEMS-ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           LF E + E +   + +++   AQNG   ++L++F  M ++    P++ T P ++ AC ++
Sbjct: 343 LFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREM-QVAGVKPNHVTIPSMLPACGNI 401

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
           A    G + HG  +      +  VG+ LI MY   G +  ++ VF+ M   ++V WN+L+
Sbjct: 402 AALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLM 461

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG----RMIHELVAG 240
           +G+  +  AKE + +F+ ++++ ++PD  S  S+L ACG +   + G    +M+ E    
Sbjct: 462 NGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYG- 520

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNA-L 298
             +   +  ++ +V++  + G + EA  +   M  E D   W +++N   L  +V  A +
Sbjct: 521 --IKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEI 578

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
              +L   E   P +  + S + A   ++
Sbjct: 579 AAEKLFHLEPENPGTYVLLSNIYAAKGMW 607


>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 655

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 210/619 (33%), Positives = 325/619 (52%), Gaps = 13/619 (2%)

Query: 52  SLVRAYGHVSNV---RILFDEMSER--SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGE 106
           +L R Y   + V   R +FDE+     +   ++ +++ Y  NG +  +L ++  ML  G 
Sbjct: 40  NLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYVSNGFAEKALDLYYKMLNSG- 98

Query: 107 YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR 166
             P  +TYP V+KAC  L   + G  +H  V  + F  D +V   L+  Y   GE+  A 
Sbjct: 99  VRPTKFTYPFVLKACAGLRAIEDGKLIHSHVKCSNFAADMYVCTALVDFYAKCGELDMAI 158

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG-VEPDCASVVSVLPACGYL 225
           KVFD M +  +V+WN +ISG+  +    + + +F  M +S  + P+ +++V + PA G  
Sbjct: 159 KVFDEMPKRDIVAWNAMISGFSLHCCLTDVIGLFLDMRRSDCLSPNLSTIVGMFPALGRA 218

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
             +  G+ +H          ++     ++D+Y K   +  AR VFD   +++ VTW++MI
Sbjct: 219 GALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDSDFKKNEVTWSAMI 278

Query: 286 NGYALNGDVRNALGLF--QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN 343
            GY  N  ++ A  +F   L+  +      + IG +L  C+    L  GR +H + IK  
Sbjct: 279 GGYVENEMIKEAGEVFLQMLVNADMAMVTPVAIGLILMGCARFGDLSGGRCVHCYAIKAG 338

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
              ++ V   +I  YAK   +  +F+ F     K  V +N++++GCV N  A ++  LF 
Sbjct: 339 FILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISGCVENCRAEESFRLFH 398

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
           QM    + P+  TL  +L A + LA L    + H Y +  G+     +   L+D+Y+KCG
Sbjct: 399 QMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVVNGYAVNTSICNALMDMYTKCG 458

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            L  A ++F    +  +DIV W+ ++ G+G+HG G+ A+SLF  M  +GV P+EVT  + 
Sbjct: 459 KLYVAKRVFD--TMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQDTGVHPDEVTLLAI 516

Query: 524 LHACSHGGLLDEGLDLFNFMLE-NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
           L ACSH GL+DEG  LFN M   +     R DHY C+ DLL RAG LDEAYD +  MP +
Sbjct: 517 LSACSHSGLVDEGKQLFNSMSRGDFNVIPRLDHYNCMTDLLARAGYLDEAYDFVNKMPFE 576

Query: 583 PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642
           P   V G LL AC  + NVELG   +K +  L  E   + VLLS  YSA  RW+DA  +R
Sbjct: 577 PDIRVLGTLLSACWTYKNVELGNEVSKKMQSL-GETTESLVLLSNTYSAAERWEDAAKIR 635

Query: 643 DVMDEKGLRKAPAHSLIEV 661
               + GL K P +S ++V
Sbjct: 636 MTQKKSGLLKTPGYSWVDV 654



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 134/520 (25%), Positives = 241/520 (46%), Gaps = 22/520 (4%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSN 62
           P+  T P     V+K     A  ++I   K +H+ +  S      ++ ++LV  Y     
Sbjct: 101 PTKFTYP----FVLKAC---AGLRAIEDGKLIHSHVKCSNFAADMYVCTALVDFYAKCGE 153

Query: 63  VRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           + +   +FDEM +R    +N ++  ++ +    D + +FL M R    +P+  T   +  
Sbjct: 154 LDMAIKVFDEMPKRDIVAWNAMISGFSLHCCLTDVIGLFLDMRRSDCLSPNLSTIVGMFP 213

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           A       + G A+HG     GF  D  V   ++ +Y     +  AR+VFD+ ++ + V+
Sbjct: 214 ALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDSDFKKNEVT 273

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSV-----LPACGYLKEIEMGRMI 234
           W+ +I GY +N   KEA  VF  ML   V  D A V  V     L  C    ++  GR +
Sbjct: 274 WSAMIGGYVENEMIKEAGEVFLQML---VNADMAMVTPVAIGLILMGCARFGDLSGGRCV 330

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H          ++   N ++  Y K GS+ +A   F  +  +D+V++ S+I+G   N   
Sbjct: 331 HCYAIKAGFILDLTVGNTVISFYAKYGSLCDAFRQFTEIGLKDIVSYNSLISGCVENCRA 390

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             +  LF  M+  G+RP+  T+  +L+ACS+L  L  G S H + +         +  AL
Sbjct: 391 EESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVVNGYAVNTSICNAL 450

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           +DMY KC  + ++ +VF    K+  V WN +L G   +GL ++A+ LF  M    V P++
Sbjct: 451 MDMYTKCGKLYVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQDTGVHPDE 510

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS--TGLIDIYSKCGSLESAHKIF 472
            TL ++L A +    + +   +   + R  F  +  +     + D+ ++ G L+ A+   
Sbjct: 511 VTLLAILSACSHSGLVDEGKQLFNSMSRGDFNVIPRLDHYNCMTDLLARAGYLDEAYDFV 570

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
           +++P  + DI V   +++    + + E    + K+M   G
Sbjct: 571 NKMPF-EPDIRVLGTLLSACWTYKNVELGNEVSKKMQSLG 609



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 11/168 (6%)

Query: 436 IHCYLIRYGF-LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
           IH +L++    LS   V   L  +Y+ C  +E A  +F EIP    + + W ++I  Y  
Sbjct: 21  IHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRAYVS 80

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR-- 552
           +G  E A+ L+ +M+ SGV+P + T+   L AC+    +++G      ++ +H  CS   
Sbjct: 81  NGFAEKALDLYYKMLNSGVRPTKFTYPFVLKACAGLRAIEDGK-----LIHSHVKCSNFA 135

Query: 553 ADHYTC--IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
           AD Y C  +VD   + G LD A  +   MP +   A W A++    +H
Sbjct: 136 ADMYVCTALVDFYAKCGELDMAIKVFDEMPKRDIVA-WNAMISGFSLH 182


>gi|334185633|ref|NP_189226.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546761|sp|Q9LU94.2|PP255_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25970
 gi|332643575|gb|AEE77096.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 212/615 (34%), Positives = 329/615 (53%), Gaps = 6/615 (0%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +G +    +LFDEM +R S  +NT++  Y   G   D+  +F  M R G  + D Y++  
Sbjct: 48  FGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKLEDAWCLFTCMKRSGS-DVDGYSFSR 106

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           ++K    +    LG  +HG V+  G++ + +VG+ L+ MY     V+ A + F  + E +
Sbjct: 107 LLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKEISEPN 166

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWM-LKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
            VSWN LI+G+ +    K A  +   M +K+ V  D  +   +L          + + +H
Sbjct: 167 SVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVH 226

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDV 294
             V    L   I   NA++  Y  CGSV++A+ VFD +   +D+++W SMI G++ +   
Sbjct: 227 AKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGFSKHELK 286

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
            +A  LF  MQ   V  +  T   LLSACS   +   G+SLH   IK+ LE       AL
Sbjct: 287 ESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSATNAL 346

Query: 355 IDMYAK--CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           I MY +     ++ +  +F     K  + WN+I+ G    GL+  AV+ F  +    ++ 
Sbjct: 347 ISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKV 406

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           +D   ++LL + + LA LQ    IH    + GF+S   V + LI +YSKCG +ESA K F
Sbjct: 407 DDYAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCF 466

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
            +I  K    V W+ +I GY  HG G+ ++ LF +M    V+ + VTFT+ L ACSH GL
Sbjct: 467 QQISSK-HSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGL 525

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           + EGL+L N M   ++   R +HY   VDLLGRAG +++A +LI +MPL P   V    L
Sbjct: 526 IQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMVLKTFL 585

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
           G C   G +E+    A  L E+EPE+   YV LS +YS +++W++  +V+ +M E+G++K
Sbjct: 586 GVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKERGVKK 645

Query: 653 APAHSLIEVRNILTA 667
            P  S IE+RN + A
Sbjct: 646 VPGWSWIEIRNQVKA 660



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 137/497 (27%), Positives = 235/497 (47%), Gaps = 11/497 (2%)

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
           ++KL +  H   +  G   D +V N ++  Y+ FG +  A  +FD M +   VSWNT+IS
Sbjct: 16  FQKLSLT-HCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMIS 74

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY      ++A  +F  M +SG + D  S   +L     +K  ++G  +H LV  G    
Sbjct: 75  GYTSCGKLEDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYEC 134

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           N+   ++LVDMY KC  V +A   F  +SE + V+W ++I G+    D++ A  L  LM+
Sbjct: 135 NVYVGSSLVDMYAKCERVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLME 194

Query: 306 FE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
            +  V  ++ T   LL+      +    + +HA  +K  L+ E+ +  A+I  YA C  V
Sbjct: 195 MKAAVTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQHEITICNAMISSYADCGSV 254

Query: 365 KLSFQVF-ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
             + +VF      K  + WN+++AG   + L   A ELF QM    VE +  T   LL A
Sbjct: 255 SDAKRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSA 314

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK--CGSLESAHKIFSEIPIKDKD 481
            +         ++H  +I+ G   V   +  LI +Y +   G++E A  +F    +K KD
Sbjct: 315 CSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFE--SLKSKD 372

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           ++ W+ II G+   G  E AV  F  +  S ++ ++  F++ L +CS    L  G  +  
Sbjct: 373 LISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHA 432

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
              ++    +     + IV +  + G ++ A    + +  K +   W A++     HG  
Sbjct: 433 LATKSGFVSNEFVISSLIV-MYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHG-- 489

Query: 602 ELGEVAAKWLFELEPEN 618
            LG+V+     ++  +N
Sbjct: 490 -LGQVSLDLFSQMCNQN 505


>gi|193848497|gb|ACF22688.1| vegetative storage protein [Brachypodium distachyon]
          Length = 587

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 196/540 (36%), Positives = 310/540 (57%), Gaps = 12/540 (2%)

Query: 134 HGRVL-------ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
           HGR L        T +  D FV   L+ MY     +  +   ++A  E  +V   ++++G
Sbjct: 7   HGRALHALAIRSCTAYT-DAFVAAALVHMYAKCRGMVGSINAYNAFSEPDMVLRTSMVTG 65

Query: 187 YFKNAYAKEALVVFD-WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           Y +N  A EAL  F   ++  G  P   ++VSV+ A   LK++  G+  H  V       
Sbjct: 66  YEQNRMAAEALEFFSRHVVGQGFMPSPVTLVSVISAAAQLKDVLNGQACHAFVIRNNFEY 125

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           ++   NA++  Y++ G+V  AR +F+ M+E+DVVTW+ M+ GY  +GD+  AL  ++ M 
Sbjct: 126 DLVLVNAILGFYMRIGAVQAARRLFEGMTEKDVVTWSCMVTGYVQSGDICEALTAYKKMV 185

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
             G++PN++T+ S++ ACS    ++ GR +H   +K   E E+ V TAL+DMY KC+  +
Sbjct: 186 EAGIKPNAVTVVSVVQACSLAPDIEEGRRVHDIAVKIGCELEMTVATALVDMYMKCSCHE 245

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + Q+F R SKK  V W  +++G   NGL  +++ +F+ ML     P+  T+  +L A +
Sbjct: 246 EAMQLFCRMSKKDAVAWAVVISGFTQNGLPDESMRVFKCMLFGGPFPDAVTMVKVLAACS 305

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
               ++QA  +H YL+  GF   + V+  L+D+YSKCG+L  A ++F      +KD+V+W
Sbjct: 306 ESGVMRQAFCLHGYLVITGFCDKIFVAAALVDLYSKCGNLGCAVRVFES--AMEKDVVLW 363

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           S +I+GYG+HG G+ AV LF+ MV S V+PN +TF S L ACSH GL+ EG  +F  M +
Sbjct: 364 SSMISGYGVHGLGQQAVELFQMMVASSVKPNSLTFVSVLSACSHSGLVQEGKRIFESMTQ 423

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
            +     A H++ +VDLLGRAG L EA  L+        H  W ALL AC  H + E+ E
Sbjct: 424 VYGVVPNAVHHSAMVDLLGRAGELQEAAKLLHGNGRADAH-TWCALLAACRAHHDTEMSE 482

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           V A  L +L+P++ G Y LL+ +Y+    W  A+  R+++ ++GL K P  S +E+ N++
Sbjct: 483 VVAAKLLKLDPDHAGYYNLLNNIYTFDENWSSAKENRNIIRDRGLNKVPGCSAVELNNVM 542



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 138/454 (30%), Positives = 244/454 (53%), Gaps = 12/454 (2%)

Query: 28  SIAGTKQLHAFIITSGPLFTH--LRSSLVRAY----GHVSNVRILFDEMSERSSFLYNTV 81
           ++A  + LHA  I S   +T   + ++LV  Y    G V ++   ++  SE    L  ++
Sbjct: 4   ALAHGRALHALAIRSCTAYTDAFVAAALVHMYAKCRGMVGSINA-YNAFSEPDMVLRTSM 62

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           +  Y QN  + ++L+ F   +    + P   T   VI A   L     G A H  V+   
Sbjct: 63  VTGYEQNRMAAEALEFFSRHVVGQGFMPSPVTLVSVISAAAQLKDVLNGQACHAFVIRNN 122

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
           F+ D  + N ++  YM  G V+AAR++F+ M E  VV+W+ +++GY ++    EAL  + 
Sbjct: 123 FEYDLVLVNAILGFYMRIGAVQAARRLFEGMTEKDVVTWSCMVTGYVQSGDICEALTAYK 182

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA--GGRLGKNIAAWNALVDMYVK 259
            M+++G++P+  +VVSV+ AC    +IE GR +H++    G  L   +A   ALVDMY+K
Sbjct: 183 KMVEAGIKPNAVTVVSVVQACSLAPDIEEGRRVHDIAVKIGCELEMTVA--TALVDMYMK 240

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
           C    EA  +F RMS++D V W  +I+G+  NG    ++ +F+ M F G  P+++T+  +
Sbjct: 241 CSCHEEAMQLFCRMSKKDAVAWAVVISGFTQNGLPDESMRVFKCMLFGGPFPDAVTMVKV 300

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           L+ACS    +++   LH + +      ++ V  AL+D+Y+KC  +  + +VF    +K  
Sbjct: 301 LAACSESGVMRQAFCLHGYLVITGFCDKIFVAAALVDLYSKCGNLGCAVRVFESAMEKDV 360

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           V W+++++G   +GL ++AVELF+ M+   V+PN  T  S+L A +    +Q+   I   
Sbjct: 361 VLWSSMISGYGVHGLGQQAVELFQMMVASSVKPNSLTFVSVLSACSHSGLVQEGKRIFES 420

Query: 440 LIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           + + YG +      + ++D+  + G L+ A K+ 
Sbjct: 421 MTQVYGVVPNAVHHSAMVDLLGRAGELQEAAKLL 454


>gi|356495279|ref|XP_003516506.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
           mitochondrial-like [Glycine max]
          Length = 944

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 210/621 (33%), Positives = 337/621 (54%), Gaps = 20/621 (3%)

Query: 51  SSLVRAYGHVSNVR---ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           +SL+  Y    +++    LF E++ +    +N +M+ +A NG   +   + + M ++G +
Sbjct: 332 NSLISLYSQCEDIKAAETLFREIALKDIVSWNAMMEGFASNGKIKEVFDLLVQMQKVGFF 391

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD-TFVGNCLIAMYMNFGEVKAAR 166
            PD  T   ++  C +L   + G  +HG  +      D   + N LI MY     V+ A 
Sbjct: 392 QPDIVTLITLLPLCAELMLSREGRTIHGYAIRRQMISDHVMLLNSLIGMYSKCNLVEKAE 451

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS--VVSVLPACGY 224
            +F++  E   VSWN +ISGY  N Y++EA  +F  ML+ G  P+C+S  V ++L +C  
Sbjct: 452 LLFNSTAEKDTVSWNAMISGYSHNRYSEEAQNLFTEMLRWG--PNCSSSTVFAILSSCNS 509

Query: 225 LK--EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA-RLVFDRMSERDVVTW 281
           L    I  G+ +H          +I   N L+ MY+ CG +  +  ++ +  +  D+ +W
Sbjct: 510 LNINSIHFGKSVHCWQLKSGFLNHILLINILMHMYINCGDLTASFSILHENSALADIASW 569

Query: 282 TSMINGYALNGDVRNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
            ++I G       R AL  F LM+ E  +  +S+T+ S LSAC++L     G+SLH  T+
Sbjct: 570 NTLIVGCVRCDHFREALETFNLMRQEPPLNYDSITLVSALSACANLELFNLGKSLHGLTV 629

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
           K  L  +  V+ +LI MY +C  +  +  VF   S      WN +++   HN  +R+A+E
Sbjct: 630 KSPLGSDTRVQNSLITMYDRCRDINSAKVVFKFFSTPNLCSWNCMISALSHNRESREALE 689

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
           LF  +     EPN+ T+  +L A   +  L+    +H ++ R        +S  LID+YS
Sbjct: 690 LFLNL---QFEPNEITIIGVLSACTQIGVLRHGKQVHAHVFRTCIQDNSFISAALIDLYS 746

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
            CG L++A ++F     K+K    W+ +I+ YG HG GE A+ LF EM +SG + ++ TF
Sbjct: 747 NCGRLDTALQVFRHA--KEKSESAWNSMISAYGYHGKGEKAIKLFHEMCESGARVSKSTF 804

Query: 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
            S L ACSH GL+++GL  +  MLE +      +H   +VD+LGR+GRLDEAY+  +   
Sbjct: 805 VSLLSACSHSGLVNQGLWFYECMLERYGVQPETEHQVYVVDMLGRSGRLDEAYEFAKGC- 863

Query: 581 LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAEN 640
              +  VWGALL AC  HG ++LG+  A++LF+LEP+N G+Y+ LS +Y A   WKDA  
Sbjct: 864 --DSSGVWGALLSACNYHGELKLGKKIAQYLFQLEPQNVGHYISLSNMYVAAGSWKDATE 921

Query: 641 VRDVMDEKGLRKAPAHSLIEV 661
           +R  + + GLRK   +SL++V
Sbjct: 922 LRQSIQDLGLRKTAGYSLVDV 942



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 167/661 (25%), Positives = 305/661 (46%), Gaps = 43/661 (6%)

Query: 26  TKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMY 85
           T ++A    L    +   P  T L +   +A G  ++ + LFDE+  R +  +N ++   
Sbjct: 109 TATVAHCAALKIGALAHLPTSTSLLTIYSKA-GDFTSSKGLFDEIQNRDAIAWNAIVAAS 167

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
            +N     ++  F  M++  +   D+ T  +++ A   +     G A+H   + +G  +D
Sbjct: 168 LENKCYRIAMDFFDKMIK-AQTGFDSTTLLLIVSASLHMKNFDQGRAIHCVSIKSGMLVD 226

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
             +GN L+ MY   G++ ++  +++ +     VSWN+++ G   N + ++AL  F  M  
Sbjct: 227 ISLGNALVDMYAKCGDLSSSECLYEEIECKDAVSWNSIMRGSLYNRHPEKALCYFKRMSF 286

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG--KNIAAWNALVDMYVKCGSV 263
           S    D  S+   + A   L E+  G+ +H L  G +LG   +++  N+L+ +Y +C  +
Sbjct: 287 SEETADNVSLCCAISASSSLGELSFGQSVHGL--GIKLGYKSHVSVANSLISLYSQCEDI 344

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG-VRPNSLTIGSLLSA 322
             A  +F  ++ +D+V+W +M+ G+A NG ++    L   MQ  G  +P+ +T+ +LL  
Sbjct: 345 KAAETLFREIALKDIVSWNAMMEGFASNGKIKEVFDLLVQMQKVGFFQPDIVTLITLLPL 404

Query: 323 CSSLYYLKRGRSLHAWTI-KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
           C+ L   + GR++H + I +Q +   V++  +LI MY+KCNLV+ +  +F  T++K TV 
Sbjct: 405 CAELMLSREGRTIHGYAIRRQMISDHVMLLNSLIGMYSKCNLVEKAELLFNSTAEKDTVS 464

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL--ADLQQAMNIHCY 439
           WNA+++G  HN  + +A  LF +ML      + +T+ ++L +   L    +    ++HC+
Sbjct: 465 WNAMISGYSHNRYSEEAQNLFTEMLRWGPNCSSSTVFAILSSCNSLNINSIHFGKSVHCW 524

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            ++ GFL+ + +   L+ +Y  CG L ++  I  E      DI  W+ +I G     H  
Sbjct: 525 QLKSGFLNHILLINILMHMYINCGDLTASFSILHENSAL-ADIASWNTLIVGCVRCDHFR 583

Query: 500 TAVSLFKEMVQS-GVQPNEVTFTSALHACSHGGLLDEGLDLF---------------NFM 543
            A+  F  M Q   +  + +T  SAL AC++  L + G  L                N +
Sbjct: 584 EALETFNLMRQEPPLNYDSITLVSALSACANLELFNLGKSLHGLTVKSPLGSDTRVQNSL 643

Query: 544 LENHQTCSRAD---------------HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           +  +  C   +                + C++  L       EA +L   +  +P     
Sbjct: 644 ITMYDRCRDINSAKVVFKFFSTPNLCSWNCMISALSHNRESREALELFLNLQFEPNEITI 703

Query: 589 GALLGACVIHGNVELG-EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
             +L AC   G +  G +V A        +N      L  LYS   R   A  V     E
Sbjct: 704 IGVLSACTQIGVLRHGKQVHAHVFRTCIQDNSFISAALIDLYSNCGRLDTALQVFRHAKE 763

Query: 648 K 648
           K
Sbjct: 764 K 764


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 199/607 (32%), Positives = 327/607 (53%), Gaps = 5/607 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G+++  R +FD+  ER+   + T++  Y+++    D+ K+F  M R G   PD  TY  +
Sbjct: 88  GNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGS-QPDYVTYITL 146

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +  C DL   K     H +++  G  ++  V N L+  Y   G + +AR++F  M     
Sbjct: 147 LTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDS 206

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VS+N +I+GY  N   +EA+ +F  M   G +P   +  +V+ A   L +   G+ IH  
Sbjct: 207 VSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGF 266

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V      +N+   NA +D Y K   VNE R +F+ M E D V++  +I  YA  G V+ +
Sbjct: 267 VVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKES 326

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + LFQ +QF      +    ++LS  +S   L+ GR LHA  +    + +  V  +L+DM
Sbjct: 327 IDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDM 386

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAKC   + + ++F R S + TVPW A+++  V  GL    ++LF +M    V  + AT 
Sbjct: 387 YAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATF 446

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
             +L A A LA +     +H  +IR GF++V      L+D+Y+ C S++ A K F E  +
Sbjct: 447 ACVLKASANLASILLGKQLHSCVIRSGFMNVYS-GCALLDMYANCASIKDAIKTFEE--M 503

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            ++++V W+ +++ Y  +G G+  +  F+EM+ SG QP+ V+F   L ACSH  L++EGL
Sbjct: 504 SERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGL 563

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             FN M   +    + +HYT +VD L R+GR DEA  L+  MP +P   VW ++L +C I
Sbjct: 564 KYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRI 623

Query: 598 HGNVELGEVAAKWLFELEP-ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           H N  L   AA  LF ++   +   YV +S +++   +W     V+  M ++G+RK PA+
Sbjct: 624 HKNYALARKAAGQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAY 683

Query: 657 SLIEVRN 663
           S +E+++
Sbjct: 684 SWVEIKH 690



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/503 (25%), Positives = 238/503 (47%), Gaps = 27/503 (5%)

Query: 107 YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAA 165
           ++P    +  +IK   DL+ R  G     R L+    + ++F  + +I+ Y+  G +  A
Sbjct: 39  FDPITSRFNFMIK---DLSER--GQLCQARQLLDQMPNRNSFSIDIIISGYVKSGNLTVA 93

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           R++FD   E +VV+W T+I  Y K+    +A  +F  M +SG +PD  + +++L  C   
Sbjct: 94  RRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCN-- 151

Query: 226 KEIEMGRMIHELVAG-GRLGK--NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
            ++E+ + +++  A   +LG   N    N L+D Y K G ++ AR +F  M   D V++ 
Sbjct: 152 -DLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFN 210

Query: 283 SMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
            MI GYA NG    A+ LF  MQ  G +P+  T  +++SA   L     G+ +H + +K 
Sbjct: 211 VMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKT 270

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
           +    V V  A +D Y+K + V    ++F    +   V +N I+      G  +++++LF
Sbjct: 271 SFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLF 330

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
           +++     +  +    ++L   A   DLQ    +H  ++         VS  L+D+Y+KC
Sbjct: 331 QELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKC 390

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G  E A +IF  + +  +  V W+ +I+     G  E  + LF EM ++ V  ++ TF  
Sbjct: 391 GKFEEADRIF--LRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFAC 448

Query: 523 ALHACSHGGLLDEGLDLFNFMLEN-----HQTCSRADHYTCIVDLLGRAGRLDEAYDLIR 577
            L A ++   +  G  L + ++ +     +  C+       ++D+      + +A     
Sbjct: 449 VLKASANLASILLGKQLHSCVIRSGFMNVYSGCA-------LLDMYANCASIKDAIKTFE 501

Query: 578 TMPLKPTHAVWGALLGACVIHGN 600
            M  +     W ALL A   +G+
Sbjct: 502 EMSERNV-VTWNALLSAYAQNGD 523



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 180/401 (44%), Gaps = 26/401 (6%)

Query: 233 MIHELVAGGRL-----------GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTW 281
           MI +L   G+L            +N  + + ++  YVK G++  AR +FD   ER VV W
Sbjct: 49  MIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIFDDTDERTVVAW 108

Query: 282 TSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
           T+MI  Y+ +    +A  LF  M   G +P+ +T  +LL+ C+ L   K     HA  +K
Sbjct: 109 TTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVK 168

Query: 342 QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVEL 401
                   V   L+D Y K   +  + ++F       +V +N ++ G  +NGL  +A+EL
Sbjct: 169 LGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIEL 228

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
           F +M     +P+D T  +++ A   L D      IH ++++  F+  V V    +D YSK
Sbjct: 229 FVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSK 288

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
              +    K+F+E+P  + D V ++VII  Y   G  + ++ LF+E+  +        F 
Sbjct: 289 HDCVNEVRKLFNEMP--ELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFP 346

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADH----YTCIVDLLGRAGRLDEAYDLIR 577
           + L   +    L  G       L      S AD        +VD+  + G+ +EA  +  
Sbjct: 347 TMLSIAASSLDLQMGR-----QLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFL 401

Query: 578 TMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
            +  + T   W A++ A V  G   L E   K  +E+   N
Sbjct: 402 RLSSRST-VPWTAMISANVQRG---LHENGLKLFYEMRRAN 438


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 208/613 (33%), Positives = 323/613 (52%), Gaps = 7/613 (1%)

Query: 52   SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
            S+   Y  V     +F+ M ER +  +N+++   A NG   +SL  F  M R      D 
Sbjct: 394  SMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHP-KTDY 452

Query: 112  YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
             T   ++ AC      K G  LHG +  +G + +  V N L++MY   G  + A  VF  
Sbjct: 453  ITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHT 512

Query: 172  MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
            M    ++SWN++++ + ++     A+++   MLK+    +  +  + L AC  L+++   
Sbjct: 513  MPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEKL--- 569

Query: 232  RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
            +++H  V    +  N+   N LV MY K G ++EA+ V   M ERDVVTW ++I G+A +
Sbjct: 570  KIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHADD 629

Query: 292  GDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC-SSLYYLKRGRSLHAWTIKQNLECEVIV 350
             D    +  F LM+ EG+  N +TI +LL  C S  Y LK G  +HA  +    E +  V
Sbjct: 630  KDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMPIHAHIVVAGFELDTYV 689

Query: 351  ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
            +++LI MYA+C  +  S  +F   + K +  WNAI +   H G   +A++   +M  + V
Sbjct: 690  QSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEEALKFIARMRNDGV 749

Query: 411  EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
            + +  + +  L     L  L +   +H ++I+ GF     V    +D+Y KCG ++   +
Sbjct: 750  DLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATMDMYGKCGEIDDVFR 809

Query: 471  IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
            I     I+ K    W+++I+    HG    A   F EM+  G++P+ VTF S L ACSHG
Sbjct: 810  ILPIPKIRSKR--SWNILISALARHGFFRQATEAFHEMLDLGLKPDHVTFVSLLSACSHG 867

Query: 531  GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
            GL+DEGL  F+ M       +  +H  CI+DLLGR+GRL EA   I  MP+ P   VW +
Sbjct: 868  GLVDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGRSGRLAEAEGFIDKMPVPPNEFVWRS 927

Query: 591  LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
            LL AC +HGN+ELG  AA  LFEL   +   YVL S + ++ +RW D ENVR  M+ + L
Sbjct: 928  LLAACKVHGNLELGRKAADRLFELNSSDDSAYVLYSNVCASTQRWGDVENVRKQMESQSL 987

Query: 651  RKAPAHSLIEVRN 663
            +K PA S I+++N
Sbjct: 988  KKKPACSWIKLKN 1000



 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 164/583 (28%), Positives = 289/583 (49%), Gaps = 30/583 (5%)

Query: 31  GTKQLHAFIITSGPLFT-HLRSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVMKMYA 86
           G +Q+H +++  G +    + +SL+  YG    VS    LF+E+ E +   + ++M  YA
Sbjct: 267 GARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYA 326

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
            NG + + L ++  +   G     N T   VI+ C     + +G  + G V+ +G D  +
Sbjct: 327 DNGHTKEVLNIYRHLRHNGLICTGN-TMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSS 385

Query: 147 F-VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
             V N LI+M+ N+  V+ A +VF+ M E   +SWN++I+    N   +E+L  F WM +
Sbjct: 386 VSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRR 445

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
           +  + D  ++ ++LPACG  + ++ GR +H L+    L  N+   N+L+ MY + GS  +
Sbjct: 446 THPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSED 505

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           A LVF  M  RD+++W SM+  +  +G   +A+ L   M       N +T  + LSAC  
Sbjct: 506 AELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSAC-- 563

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
            Y L++ + +HA+ I   +   +I+   L+ MY K  L+  + +V     ++  V WNA+
Sbjct: 564 -YNLEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNAL 622

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL-----PAYAILADLQQAMNIHCYL 440
           + G   +      ++ F  M  E +  N  T+ +LL     P Y     L+  M IH ++
Sbjct: 623 IGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYL----LKHGMPIHAHI 678

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           +  GF     V + LI +Y++CG L ++  IF    + +K+   W+ I +    +G GE 
Sbjct: 679 VVAGFELDTYVQSSLITMYAQCGDLNTSSYIFD--VLANKNSSTWNAIFSANAHYGPGEE 736

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TC 558
           A+     M   GV  ++ +F+ AL    +  +LDEG  L ++++   +     D Y    
Sbjct: 737 ALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWII---KLGFELDEYVLNA 793

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHA--VWGALLGACVIHG 599
            +D+ G+ G +D   D+ R +P+    +   W  L+ A   HG
Sbjct: 794 TMDMYGKCGEID---DVFRILPIPKIRSKRSWNILISALARHG 833



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 136/483 (28%), Positives = 241/483 (49%), Gaps = 19/483 (3%)

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
           K  ++++   +G ALH   +      +TF  N L+ MY  FG +K A+ VFD M++ +  
Sbjct: 155 KGFSEISEGNVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDA 214

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHEL 237
           SWN +ISG+ +  +  +A+  F  M ++GV P    + S++ AC     +  G R IH  
Sbjct: 215 SWNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGY 274

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V    L  N+    +L+  Y   GSV+EA  +F+ + E ++V+WTS++  YA NG  +  
Sbjct: 275 VVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEV 334

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC-EVIVETALID 356
           L +++ ++  G+     T+ +++  C        G  +    IK  L+   V V  +LI 
Sbjct: 335 LNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLIS 394

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           M+   + V+ + +VF    ++ T+ WN+I+    HNG   +++  F  M     + +  T
Sbjct: 395 MFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYIT 454

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           +++LLPA      L+    +H  + + G  S V V   L+ +Y++ GS E A  +F  +P
Sbjct: 455 ISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMP 514

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
              +D++ W+ ++A +   G    A+ L  EM+++    N VTFT+AL AC +   L++ 
Sbjct: 515 A--RDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYN---LEKL 569

Query: 537 LDLFNFMLENHQTCSRADHYTCI-----VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
             +  F++        A H+  I     V + G+ G +DEA  + + MP +     W AL
Sbjct: 570 KIVHAFVIH------FAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDV-VTWNAL 622

Query: 592 LGA 594
           +G 
Sbjct: 623 IGG 625


>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
          Length = 841

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 215/662 (32%), Positives = 354/662 (53%), Gaps = 34/662 (5%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFT--HLRSSLVRAYGHVSNVRIL- 66
           P +  +V  L+    A++   G + +H + + +G   +  H+ ++L+  Y    ++R+L 
Sbjct: 159 PNSRTMVALLLACEGASELRLG-RGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLP 216

Query: 67  --FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
             FD M  R+   +N ++  Y   G    +L++F+ ML + E   D  T  + ++AC +L
Sbjct: 217 LLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQML-VDEVKFDCVTMLVAVQACAEL 275

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
              KLG  +H   +   F  D ++ N L+ MY N G ++++ ++F+++       WN++I
Sbjct: 276 GSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMI 335

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE-IEMGRMIHELVAGGRL 243
           S Y      +EA+ +F  M   GV+ D  +VV +L  C  L   +  G+ +H  V    +
Sbjct: 336 SAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGM 395

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
             + +  NAL+ MY +   V   + +FDRM   D+++W +MI   A N     A  LF+ 
Sbjct: 396 RIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFER 455

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M+   ++PNS TI S+L+AC  +  L  GRS+H + +K ++E    + TAL DMY  C  
Sbjct: 456 MRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGD 515

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
              +  +F     +  + WNA                     ++   EPN  T+ ++L +
Sbjct: 516 EATARDLFEGCPDRDLISWNA---------------------MIXKAEPNSVTIINVLSS 554

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVS--TGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
           +  LA L Q  ++H Y+ R GF   +++S     I +Y++CGSL+SA  IF  +P   ++
Sbjct: 555 FTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLP--KRN 612

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           I+ W+ +IAGYGM+G G  A+  F +M++ G +PN VTF S L ACSH G ++ GL LF+
Sbjct: 613 IISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQLFH 672

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            M+++        HY+CIVDLL R G +DEA + I +MP++P  +VW ALL +C  + + 
Sbjct: 673 SMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRAYSDA 732

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +  +   + L +LEP N GNYVLLS +Y+    W +   +R  + EKGLRK P  S I V
Sbjct: 733 KQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGISWIIV 792

Query: 662 RN 663
           +N
Sbjct: 793 KN 794



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 172/607 (28%), Positives = 291/607 (47%), Gaps = 48/607 (7%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLR--SSLVRAY---G 58
           P++ TLP    LV+K     AA  ++   K +H  I     L   +R  +++V  Y   G
Sbjct: 58  PNNTTLP----LVLKAC---AAQNAVERGKSIHRSI-QGTDLMDDVRVGTAVVDFYCKCG 109

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
            V + R +FD MS+R   L+N ++  Y   G   +++ +   M R     P++ T   ++
Sbjct: 110 FVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGR-ENLRPNSRTMVALL 168

Query: 119 KACTDLAWRKLGIALHGRVLITG-FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
            AC   +  +LG  +HG  L  G FD +  V   LI  Y+ F +++    +FD M   ++
Sbjct: 169 LACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRF-DMRVLPLLFDLMVVRNI 227

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSWN +ISGY+      +AL +F  ML   V+ DC +++  + AC  L  +++G+ IH+L
Sbjct: 228 VSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQL 287

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                  +++   NAL++MY   GS+  +  +F+ +  RD   W SMI+ YA  G    A
Sbjct: 288 AIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEA 347

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYY-LKRGRSLHAWTIKQNLECEVIVETALID 356
           + LF  MQ EGV+ +  T+  +LS C  L   L +G+SLHA  IK  +  +  +  AL+ 
Sbjct: 348 MDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLS 407

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY + N V+   ++F R      + WN ++     N L  +A ELF +M    ++PN  T
Sbjct: 408 MYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPNSYT 467

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           + S+L A   +  L    +IH Y++++       + T L D+Y  CG   +A  +F   P
Sbjct: 468 IISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLFEGCP 527

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
             D+D++ W+ +I                        +PN VT  + L + +H   L +G
Sbjct: 528 --DRDLISWNAMIX---------------------KAEPNSVTIINVLSSFTHLATLPQG 564

Query: 537 LDLFNFMLENHQT----CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
             L  ++     +     S A+ +   + +  R G L  A ++ +T+P K     W A++
Sbjct: 565 QSLHAYVTRRGFSLGLDLSLANAF---ITMYARCGSLQSAENIFKTLP-KRNIISWNAMI 620

Query: 593 GACVIHG 599
               ++G
Sbjct: 621 AGYGMNG 627



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 145/517 (28%), Positives = 251/517 (48%), Gaps = 8/517 (1%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N+V+K  A        L  +  M  LG   P+N T P+V+KAC      + G ++H  +
Sbjct: 28  WNSVIKHQANLKNDQAILSAYTQMESLGVL-PNNTTLPLVLKACAAQNAVERGKSIHRSI 86

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
             T    D  VG  ++  Y   G V+ AR VFDAM +  VV WN ++ GY      +EA+
Sbjct: 87  QGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAM 146

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDM 256
           ++   M +  + P+  ++V++L AC    E+ +GR +H   +  G    N     AL+  
Sbjct: 147 LLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGF 206

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y++   +    L+FD M  R++V+W +MI+GY   GD   AL LF  M  + V+ + +T+
Sbjct: 207 YLRF-DMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTM 265

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
              + AC+ L  LK G+ +H   IK     ++ +  AL++MY+    ++ S Q+F     
Sbjct: 266 LVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPN 325

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD-LQQAMN 435
           +    WN++++     G   +A++LF +M  E V+ ++ T+  +L     LA  L +  +
Sbjct: 326 RDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKS 385

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           +H ++I+ G      +   L+ +Y++   +ES  KIF    +K  DI+ W+ +I     +
Sbjct: 386 LHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDR--MKGVDIISWNTMILALARN 443

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
                A  LF+ M +S ++PN  T  S L AC     LD G  +  ++++ H        
Sbjct: 444 TLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMK-HSIEINQPL 502

Query: 556 YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
            T + D+    G    A DL    P +   + W A++
Sbjct: 503 RTALADMYMNCGDEATARDLFEGCPDRDLIS-WNAMI 538



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 162/327 (49%), Gaps = 10/327 (3%)

Query: 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
           +D   W S+I   A   + +  L  +  M+  GV PN+ T+  +L AC++   ++RG+S+
Sbjct: 23  KDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSI 82

Query: 336 HAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLA 395
           H      +L  +V V TA++D Y KC  V+ +  VF   S +  V WNA++ G V  G  
Sbjct: 83  HRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCY 142

Query: 396 RKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG-FLSVVEVSTG 454
            +A+ L R+M  E + PN  T+ +LL A    ++L+    +H Y +R G F S   V+T 
Sbjct: 143 EEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATA 202

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           LI  Y +   +     +F  + +  ++IV W+ +I+GY   G    A+ LF +M+   V+
Sbjct: 203 LIGFYLRF-DMRVLPLLFDLMVV--RNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVK 259

Query: 515 PNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEA 572
            + VT   A+ AC+  G L  G  +    ++        D Y    ++++    G L+ +
Sbjct: 260 FDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFV---EDLYILNALLNMYSNNGSLESS 316

Query: 573 YDLIRTMPLKPTHAVWGALLGACVIHG 599
           + L  ++P +    +W +++ A    G
Sbjct: 317 HQLFESVPNRDA-PLWNSMISAYAAFG 342


>gi|449464466|ref|XP_004149950.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101216349
            [Cucumis sativus]
          Length = 1830

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 210/638 (32%), Positives = 350/638 (54%), Gaps = 44/638 (6%)

Query: 34   QLHAFIITSGPLFTHL-RSSLVRAYGHVSNVR---ILFDEMSERSSFLYNTVMKMYAQNG 89
            + H  +I  G +   L  + LV  YG + +VR   ++FD+M     + +  +++ Y  N 
Sbjct: 1138 KFHGLLIVHGLIGNLLCDTKLVGVYGALGDVRSARMVFDQMPNPDFYAWKVMIRWYFLND 1197

Query: 90   ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
               D +  F   +R+     DN  + I++KAC++L     G  +H +++  G   D+FV 
Sbjct: 1198 LFVDVIP-FYNRMRMSFRECDNIIFSIILKACSELREIVEGRKVHCQIVKVG-GPDSFVM 1255

Query: 150  NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
              LI MY   G+V+ +  VF+ + + +VVSW ++I+GY +N  A+E LV+F+ M  + VE
Sbjct: 1256 TGLIDMYGKCGQVECSSAVFEEIMDKNVVSWTSMIAGYVQNNCAEEGLVLFNRMRDALVE 1315

Query: 210  PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV-----DMYVKCGSVN 264
             +  ++ S++ A   L+ +  G+ +H     G   KNIA  ++ +     DMYVKCG   
Sbjct: 1316 SNPFTLGSIINAFTKLRALHQGKWVH-----GYAIKNIAELSSFLATTFLDMYVKCGQTR 1370

Query: 265  EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
            +AR+++D +   D+V+WT MI GY       + L LF     + +R + L   +LL    
Sbjct: 1371 DARMIYDELPTIDLVSWTVMIVGYTQARQPNDGLRLFA----DEIRSDLLPNSALLQV-- 1424

Query: 325  SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
               + +R R L+A                LIDMYAKC+ +  ++ +F    +K  + WN+
Sbjct: 1425 ---FFQRVRFLNA----------------LIDMYAKCHTISDAYAIFHGVLEKDVITWNS 1465

Query: 385  ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
            +++G   NG A  A+ LF QM    + P+  TL S L A A L  +Q   ++H Y ++ G
Sbjct: 1466 MISGYAQNGSAYDALRLFNQMRSYSLAPDAITLVSTLSASATLGAIQVGSSLHAYSVKGG 1525

Query: 445  -FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
             F S + + T L++ Y+KCG   SA  +F  + +K+  I+ WS +I GYG+ G G  ++S
Sbjct: 1526 LFSSNLYIGTALLNFYAKCGDARSARMVFDSMGVKN--IITWSAMIGGYGVQGDGSGSLS 1583

Query: 504  LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563
            +F  M++  ++PNEV FT+ L ACS+ G+++EG   F  M++++       HY C+VDLL
Sbjct: 1584 IFSNMLKEDLKPNEVIFTTVLSACSYSGMVEEGGRYFKSMIQDYNFVPSMKHYACMVDLL 1643

Query: 564  GRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623
             R+G+LDEA D I+ MP++   +++GA L  C ++   +LGEV  + + +L       YV
Sbjct: 1644 ARSGKLDEALDFIKKMPVQRDVSLYGAFLHGCGLYSRFDLGEVVVREMLQLHRNEACYYV 1703

Query: 624  LLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            L+S LY++  +W     VRD+M ++GL K P +SL+E 
Sbjct: 1704 LVSNLYASDGKWGQVNEVRDLMLQRGLNKVPGYSLVET 1741



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/471 (27%), Positives = 216/471 (45%), Gaps = 31/471 (6%)

Query: 131  IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
            I  HG +++ G   +      L+ +Y   G+V++AR VFD M      +W  +I  YF N
Sbjct: 1137 IKFHGLLIVHGLIGNLLCDTKLVGVYGALGDVRSARMVFDQMPNPDFYAWKVMIRWYFLN 1196

Query: 191  AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAA 249
                + +  ++ M  S  E D      +L AC  L+EI  GR +H ++V  G  G +   
Sbjct: 1197 DLFVDVIPFYNRMRMSFRECDNIIFSIILKACSELREIVEGRKVHCQIVKVG--GPDSFV 1254

Query: 250  WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
               L+DMY KCG V  +  VF+ + +++VV+WTSMI GY  N      L LF  M+   V
Sbjct: 1255 MTGLIDMYGKCGQVECSSAVFEEIMDKNVVSWTSMIAGYVQNNCAEEGLVLFNRMRDALV 1314

Query: 310  RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
              N  T+GS+++A + L  L +G+ +H + IK   E    + T  +DMY KC   + +  
Sbjct: 1315 ESNPFTLGSIINAFTKLRALHQGKWVHGYAIKNIAELSSFLATTFLDMYVKCGQTRDARM 1374

Query: 370  VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
            ++        V W  ++ G          + LF           D   + LLP  A+L  
Sbjct: 1375 IYDELPTIDLVSWTVMIVGYTQARQPNDGLRLF----------ADEIRSDLLPNSALL-- 1422

Query: 430  LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
                     +  R  FL+       LID+Y+KC ++  A+ IF    + +KD++ W+ +I
Sbjct: 1423 -------QVFFQRVRFLN------ALIDMYAKCHTISDAYAIFH--GVLEKDVITWNSMI 1467

Query: 490  AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
            +GY  +G    A+ LF +M    + P+ +T  S L A +  G +  G  L  + ++    
Sbjct: 1468 SGYAQNGSAYDALRLFNQMRSYSLAPDAITLVSTLSASATLGAIQVGSSLHAYSVKGGLF 1527

Query: 550  CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             S     T +++   + G    A  +  +M +K     W A++G   + G+
Sbjct: 1528 SSNLYIGTALLNFYAKCGDARSARMVFDSMGVKNI-ITWSAMIGGYGVQGD 1577


>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 606

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 194/527 (36%), Positives = 298/527 (56%), Gaps = 11/527 (2%)

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
           +TG   D      LI  Y + G  + A  +FD M    V++W ++I+GY    +   A  
Sbjct: 40  LTGLTTD------LIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWN 93

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-VAGGRLGKNIAAWNALVDMY 257
           VF  ML+ GV+P+  +V +VL AC  LK +  G+++H L +  G  G +I   NAL+DMY
Sbjct: 94  VFTNMLRDGVKPNAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMY 153

Query: 258 VKC-GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
             C  S++ ARLVF+ +  ++ V+WT++I GY    D    L +F+ M  E    +  + 
Sbjct: 154 ATCCDSMDNARLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSF 213

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
              +SAC+S+     G+ +HA  I    E  + V  A++DMY +C     + Q+F   ++
Sbjct: 214 SIAVSACASIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQ 273

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           K T+ WN ++AG      + +++ +F QM+ E   PN  T  S++ A A LA L     +
Sbjct: 274 KDTITWNTLIAG-FETLDSYESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQL 332

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H  +I  G  + +E+S  LID+Y+KCG++  +HKIFS   ++  ++V W+ ++ GYG HG
Sbjct: 333 HGGIIHRGLDNNLELSNALIDMYAKCGNVADSHKIFS--GMRHTNLVSWTSMMIGYGAHG 390

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
           HG+ AV LF EMV SG++P+++ F + L ACSH GL+DEGL  F  M   +      D Y
Sbjct: 391 HGKEAVDLFNEMVGSGIKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPDRDIY 450

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
            C+VDLL RAGR+ EAY+LI  MP KP  ++W ALLGAC  +    + ++AA  + E++P
Sbjct: 451 ACVVDLLSRAGRVKEAYELIENMPFKPDESIWVALLGACKKYKQPSIQKLAALKVLEMKP 510

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
              G YVLLS   +A   W D  ++R +M     +K    S IE++N
Sbjct: 511 NKAGTYVLLSNFSAAEGNWADFASLRKLMRSTKSKKEVGRSWIELKN 557



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/452 (27%), Positives = 217/452 (48%), Gaps = 9/452 (1%)

Query: 46  FTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGML 102
            T L + L+++Y   G       LFDEM  R    + +++  Y        +  +F  ML
Sbjct: 40  LTGLTTDLIKSYFDKGSFEEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAWNVFTNML 99

Query: 103 RLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT-FVGNCLIAMYMNFGE 161
           R G   P+ +T   V+KAC  L     G  +HG  +  G    + +V N L+ MY    +
Sbjct: 100 RDG-VKPNAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCD 158

Query: 162 -VKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLP 220
            +  AR VF+ +   + VSW TLI+GY     A   L VF  M     E    S    + 
Sbjct: 159 SMDNARLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSPFSFSIAVS 218

Query: 221 ACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT 280
           AC  +    +G+ +H  V       N+   NA++DMY +C   +EA+ +F  M+++D +T
Sbjct: 219 ACASIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTIT 278

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           W ++I G+    D   +L +F  M  EG  PN  T  S+++AC++L  L  G+ LH   I
Sbjct: 279 WNTLIAGFE-TLDSYESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGII 337

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
            + L+  + +  ALIDMYAKC  V  S ++F+       V W +++ G   +G  ++AV+
Sbjct: 338 HRGLDNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVD 397

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIY 459
           LF +M+   ++P+     ++L A +    + + +     +   Y      ++   ++D+ 
Sbjct: 398 LFNEMVGSGIKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPDRDIYACVVDLL 457

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           S+ G ++ A+++   +P K  D  +W  ++  
Sbjct: 458 SRAGRVKEAYELIENMPFK-PDESIWVALLGA 488



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 188/369 (50%), Gaps = 8/369 (2%)

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGM-LRLGEYNPDNYTYPIVI 118
           + N R++F+++  +++  + T++  Y     +   L++F  M +  GE +P  +++ I +
Sbjct: 160 MDNARLVFEDIGTKNAVSWTTLITGYTHRRDAFGGLRVFRQMFMEEGELSP--FSFSIAV 217

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
            AC  +    LG  +H  V+  GF+ +  V N ++ MY        A+++F  M +   +
Sbjct: 218 SACASIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGEMTQKDTI 277

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           +WNTLI+G F+   + E+L +F  M+  G  P+C +  SV+ AC  L  +  G+ +H  +
Sbjct: 278 TWNTLIAG-FETLDSYESLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCGQQLHGGI 336

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               L  N+   NAL+DMY KCG+V ++  +F  M   ++V+WTSM+ GY  +G  + A+
Sbjct: 337 IHRGLDNNLELSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAV 396

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG-RSLHAWTIKQNLECEVIVETALIDM 357
            LF  M   G++P+ +   ++LSACS    +  G R     T   N+  +  +   ++D+
Sbjct: 397 DLFNEMVGSGIKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPDRDIYACVVDL 456

Query: 358 YAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
            ++   VK ++++      K     W A+L  C      + +++    + V  ++PN A 
Sbjct: 457 LSRAGRVKEAYELIENMPFKPDESIWVALLGAC--KKYKQPSIQKLAALKVLEMKPNKAG 514

Query: 417 LNSLLPAYA 425
              LL  ++
Sbjct: 515 TYVLLSNFS 523



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 136/260 (52%), Gaps = 10/260 (3%)

Query: 33  KQLHAFIITSG-----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           KQ+HA +I  G     P+   +     R     S  + LF EM+++ +  +NT++  + +
Sbjct: 230 KQVHAAVINHGFESNLPVMNAILDMYCRCRC-ASEAKQLFGEMTQKDTITWNTLIAGF-E 287

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
              S++SL +F  M+  G ++P+ +T+  VI AC +LA    G  LHG ++  G D +  
Sbjct: 288 TLDSYESLCIFSQMVSEG-FSPNCFTFTSVIAACANLAILYCGQQLHGGIIHRGLDNNLE 346

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           + N LI MY   G V  + K+F  M   ++VSW +++ GY  + + KEA+ +F+ M+ SG
Sbjct: 347 LSNALIDMYAKCGNVADSHKIFSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSG 406

Query: 208 VEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           ++PD    ++VL AC +   ++ G R    + +   +  +   +  +VD+  + G V EA
Sbjct: 407 IKPDKIVFMAVLSACSHAGLVDEGLRYFRLMTSYYNVAPDRDIYACVVDLLSRAGRVKEA 466

Query: 267 RLVFDRMS-ERDVVTWTSMI 285
             + + M  + D   W +++
Sbjct: 467 YELIENMPFKPDESIWVALL 486


>gi|297830924|ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 824

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 206/607 (33%), Positives = 349/607 (57%), Gaps = 12/607 (1%)

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
           VR +FD M  ++   +NT++  Y + G + ++ + F  M+R+ E  P   ++  V  A  
Sbjct: 171 VRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRM-EIKPSPVSFVNVFPAVA 229

Query: 123 DLAWRKLGIALHGRVLITG--FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
                K     +G +L  G  +  D FV +  I+MY   G+++++R+VFD+  E ++  W
Sbjct: 230 TSRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIEVW 289

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           NT+I  Y +N    E++ +F   + S  +  D  + +    A   L+++E+GR  H  V+
Sbjct: 290 NTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTFLLAASAVSGLQQVELGRQFHGFVS 349

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
                  I   N+L+ MY +CG V ++  VF  M ERDVV+W +MI+ +  NG     L 
Sbjct: 350 KNFRELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGLM 409

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           L   MQ +G + + +T+ +LLSA S+L   + G+  H + I+Q ++ E +  + LIDMYA
Sbjct: 410 LVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQGIQFEGM-NSYLIDMYA 468

Query: 360 KCNLVKLSFQVFART--SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           K  L+++S ++F  +  +++    WN++++G   NG   +   +FR+ML + + PN  T+
Sbjct: 469 KSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAVTV 528

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            S+LPA + +  +     +H + IR      V V++ L+D+YSK G+++ A  +FS+   
Sbjct: 529 ASILPACSQVGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAENMFSQT-- 586

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
           K+++ V ++ +I GYG HG GE A+SLF  M + G++P+ + F + L ACS+ GL+DEGL
Sbjct: 587 KERNSVTYTTMILGYGQHGMGERAISLFLSMQELGIKPDAIAFVAVLSACSYSGLVDEGL 646

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA-VWGALLGACV 596
            +F  M E +     ++HY CI D+LGR GR++EAY+ ++ +  +   A +WG+LLG+C 
Sbjct: 647 KIFEDMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCR 706

Query: 597 IHGNVELGEVAAKWLFELEP-ENPGNY-VLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP 654
           +HG +EL E  ++ L +L+  +N   Y VLLS +Y+  + WK  + VR  M EKGL+K  
Sbjct: 707 LHGELELAETVSERLAKLDKGKNFSGYEVLLSNMYAEEQNWKSVDRVRKGMREKGLKKEV 766

Query: 655 AHSLIEV 661
             S IEV
Sbjct: 767 GRSGIEV 773



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 163/593 (27%), Positives = 287/593 (48%), Gaps = 26/593 (4%)

Query: 41  TSGPLFTHLRSSLVR--AYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMF 98
           T  P    +RS L +    G+    R LFD + + ++ L+NT++  +  N   H++L  +
Sbjct: 34  TLTPQTPSIRSRLSKICQEGNPQLARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFY 93

Query: 99  LGMLRLGEYNP-DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMY- 156
             M +   +   D YTY   +KAC +    K G A+H  ++    +    V N L+ MY 
Sbjct: 94  SRMKKTAPFTKCDAYTYSSTLKACAETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYV 153

Query: 157 ---------MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
                    ++  E    RKVFD M   +VV+WNTLIS Y K     EA   F  M++  
Sbjct: 154 SCLNAPGSELDCFEYDVVRKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFAIMMRME 213

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELV--AGGRLGKNIAAWNALVDMYVKCGSVNE 265
           ++P   S V+V PA    + I+   + + L+   G    K++   ++ + MY + G +  
Sbjct: 214 IKPSPVSFVNVFPAVATSRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLES 273

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACS 324
           +R VFD   ER++  W +MI  Y  N  +  ++ LF + +  + +  + +T     SA S
Sbjct: 274 SRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTFLLAASAVS 333

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
            L  ++ GR  H +  K   E  +++  +L+ MY++C  V+ SF VF    ++  V WN 
Sbjct: 334 GLQQVELGRQFHGFVSKNFRELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNT 393

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           +++  V NGL  + + L  +M  +  + +  T+ +LL A + L + +     H +LIR G
Sbjct: 394 MISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQG 453

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
            +    +++ LID+Y+K G +  + K+F      ++D   W+ +I+GY  +GH E    +
Sbjct: 454 -IQFEGMNSYLIDMYAKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLV 512

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH--QTCSRADHYTCIVDL 562
           F++M++  ++PN VT  S L ACS  G +D G  L  F +  +  Q    A   + +VD+
Sbjct: 513 FRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSIRQYLDQNVFVA---SALVDM 569

Query: 563 LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
             +AG +  A ++      + +      +LG    +G   +GE A      ++
Sbjct: 570 YSKAGAIKYAENMFSQTKERNSVTYTTMILG----YGQHGMGERAISLFLSMQ 618



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 136/506 (26%), Positives = 251/506 (49%), Gaps = 30/506 (5%)

Query: 24  AATKSIAGTKQLHAFIITSGPLFTH---LRSSLVRAY---GHVSNVRILFDEMSERSSFL 77
           A ++SI      +  ++  G  +     + SS +  Y   G + + R +FD   ER+  +
Sbjct: 229 ATSRSIKKANVFYGLMLKLGDEYVKDLFVVSSAISMYAELGDLESSRRVFDSCVERNIEV 288

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +NT++ +Y QN    +S+++FL  +   E   D  T+ +   A + L   +LG   HG V
Sbjct: 289 WNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTFLLAASAVSGLQQVELGRQFHGFV 348

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
                ++   + N L+ MY   G V+ +  VF +M E  VVSWNT+IS + +N    E L
Sbjct: 349 SKNFRELPIVIINSLMVMYSRCGFVQKSFGVFHSMRERDVVSWNTMISAFVQNGLDDEGL 408

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA-LVDM 256
           ++   M K G + D  +V ++L A   L+  E+G+  H  +   R G      N+ L+DM
Sbjct: 409 MLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLI--RQGIQFEGMNSYLIDM 466

Query: 257 YVKCGSVNEARLVFDR--MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           Y K G +  ++ +F+    +ERD  TW SMI+GY  NG       +F+ M  + +RPN++
Sbjct: 467 YAKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEETFLVFRKMLEQNIRPNAV 526

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T+ S+L ACS +  +  G+ LH ++I+Q L+  V V +AL+DMY+K   +K +  +F++T
Sbjct: 527 TVASILPACSQVGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAENMFSQT 586

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA--------- 425
            ++ +V +  ++ G   +G+  +A+ LF  M    ++P+     ++L A +         
Sbjct: 587 KERNSVTYTTMILGYGQHGMGERAISLFLSMQELGIKPDAIAFVAVLSACSYSGLVDEGL 646

Query: 426 -ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
            I  D+++  NI      Y  ++         D+  + G +  A++    +  +     +
Sbjct: 647 KIFEDMREVYNIQPSSEHYCCIT---------DMLGRVGRVNEAYEFVKGLGEEGNIAEL 697

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQ 510
           W  ++    +HG  E A ++ + + +
Sbjct: 698 WGSLLGSCRLHGELELAETVSERLAK 723


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  358 bits (919), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 212/597 (35%), Positives = 320/597 (53%), Gaps = 44/597 (7%)

Query: 108 NPDNY--TYPIV--IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLI--AMYMNFGE 161
           N D Y   +P +  I  C++    K    +H ++L TG   D F  + LI  A    F  
Sbjct: 28  NNDRYFANHPTLSLIDQCSETKQLK---QIHAQMLRTGLFFDPFSASRLITAAALSPFPS 84

Query: 162 VKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE-PDCASVVSVLP 220
           +  A++VFD +   ++ +WNTLI  Y  ++   ++L++F  ML    + PD  +   ++ 
Sbjct: 85  LDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIK 144

Query: 221 ACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT 280
           A   L+E+  G+  H +V    LG ++   N+L+  Y KCG +     VF  +  RDVV+
Sbjct: 145 AASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVS 204

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           W SMI  +   G    AL LFQ M+ + V+PN +T+  +LSAC+     + GR +H++  
Sbjct: 205 WNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIE 264

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW------------------ 382
           +  +   + +  A++DMY KC  V+ + ++F +  +K  V W                  
Sbjct: 265 RNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQG 324

Query: 383 -------------NAILAGCVHNGLARKAVELFRQM-LVEVVEPNDATLNSLLPAYAILA 428
                        NA+++     G  ++A+ELF ++ L +  +P++ TL S L A A L 
Sbjct: 325 IFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLG 384

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            +     IH Y+ + G      ++T LID+Y KCG L+ A  +F  +  + KD+ VWS +
Sbjct: 385 AMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSV--ERKDVFVWSAM 442

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           IAG  MHGHG+ A++LF +M +  V+PN VTFT+ L ACSH GL++EG   FN M   + 
Sbjct: 443 IAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYG 502

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAA 608
                 HY C+VD+LGRAG L+EA +LI  MP+ P  +VWGALLGAC IH NV L E A 
Sbjct: 503 VLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQAC 562

Query: 609 KWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
             L ELEP N G YVLLS +Y+   +W     +R +M + GL+K P  S IEV  I+
Sbjct: 563 SQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIV 619



 Score =  261 bits (667), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 158/545 (28%), Positives = 272/545 (49%), Gaps = 57/545 (10%)

Query: 4   PSHHTLPK--------------TTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHL 49
           P  H+LP                 H  + L+ Q + TK +   KQ+HA ++ +G  F   
Sbjct: 12  PRSHSLPTPNPNSITLNNDRYFANHPTLSLIDQCSETKQL---KQIHAQMLRTGLFFDPF 68

Query: 50  RSS-LVRA-----YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR 103
            +S L+ A     +  +   + +FD++   + + +NT+++ YA +   H SL +FL ML 
Sbjct: 69  SASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLH 128

Query: 104 LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163
                PD +T+P +IKA ++L     G A HG V+      D F+ N LI  Y   GE+ 
Sbjct: 129 QSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELG 188

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
              +VF  +    VVSWN++I+ + +    +EAL +F  M    V+P+  ++V VL AC 
Sbjct: 189 LGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACA 248

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
              + E GR +H  +   R+G+++   NA++DMY KCGSV +A+ +FD+M E+D+V+WT+
Sbjct: 249 KKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTT 308

Query: 284 MINGYALNGDVRNALGLFQLMQFEGV--------------------------------RP 311
           M+ GYA  G+   A G+F  M  + +                                +P
Sbjct: 309 MLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKP 368

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           + +T+ S LSAC+ L  +  G  +H +  KQ ++    + T+LIDMY KC  ++ +  VF
Sbjct: 369 DEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVF 428

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
               +K    W+A++AG   +G  + A+ LF +M  + V+PN  T  ++L A + +  ++
Sbjct: 429 HSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVE 488

Query: 432 QAMNIHCYL-IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
           +       + + YG L  V+    ++DI  + G LE A ++  ++P+      VW  ++ 
Sbjct: 489 EGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPA-ASVWGALLG 547

Query: 491 GYGMH 495
              +H
Sbjct: 548 ACTIH 552


>gi|125529041|gb|EAY77155.1| hypothetical protein OsI_05121 [Oryza sativa Indica Group]
          Length = 916

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 197/598 (32%), Positives = 331/598 (55%), Gaps = 10/598 (1%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F   S ++   +N ++K   +N   ++++ MF  M    +  PD  T   +I AC D  
Sbjct: 324 VFLSTSNKNLVTWNAMIKGLVENDRVNEAMCMFQEMR--SKNQPDVATLVTIISACGDRG 381

Query: 126 WRKLGIALHGRVLITG-FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
               G  +HG ++  G    +  VGN L+ +YM   +   AR +F  M    ++SWNT+I
Sbjct: 382 LLPEGKEVHGYIIKKGHIYEECSVGNSLLDLYMKCNDPSTARILFRTMPMRDLISWNTMI 441

Query: 185 SGYFKN-AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243
           SGY +N +  +EA  +F  +L  G+    ++VV+V+P+C   +++  G+ +H  +     
Sbjct: 442 SGYSRNDSLGEEAKAMFKGLLSEGLSCTLSTVVAVIPSCFCPQDLNFGKSVHSFILKYGF 501

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-RDVVTWTSMINGYALNGDVRNALGLFQ 302
              ++A N+L+ MY+ CG    A  + + ++   D+++W + I G   NG   +AL  FQ
Sbjct: 502 LTGVSAANSLIHMYICCGDSLAAFSLLESITPMSDIISWNTAIVGCVQNGLYGDALEAFQ 561

Query: 303 LMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
            M     + P+S+T+ S+LS C +L     G+S+H   +K+ +E  + V+ AL+ MY + 
Sbjct: 562 FMHSTLTLNPDSITLVSVLSVCGNLKLQSLGKSIHCMALKRLIEFNLRVKNALLTMYFRF 621

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
              + +  +F+    +    WN +++G   N    +A++ +++M  E  EPN+ ++  ++
Sbjct: 622 GDTESAELIFSSLVGRNLCSWNCMISGFAQNNEGLRALQFYKKM--EYFEPNEISIVGII 679

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            A   L DL+Q  NIH +++R+G  + V +S  L+D+YSKCG L+ + ++F      +K 
Sbjct: 680 CACTQLGDLRQGKNIHGHVVRFGLQTNVFISASLVDMYSKCGRLDISIRVFESSA--EKS 737

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           I  W+ +I+ +G HG G  ++ +F +M  SGV+    TF + L ACSH GL DEGL  ++
Sbjct: 738 IACWNSMISAFGFHGLGLKSIEIFWKMNNSGVKATRSTFIALLSACSHSGLTDEGLKYYH 797

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            M+E+       +H+ C+VD+LGRAGRL EA+  + ++P K  H VWGALL AC     +
Sbjct: 798 LMIEHFGIIPTPEHHVCVVDMLGRAGRLQEAHKFVESLPSKQAHGVWGALLSACSKKSEL 857

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           ++ E  AK L  LEPEN G YV +S LY+    W  A  VRD++ +KGL K    S+I
Sbjct: 858 KMCESVAKHLLCLEPENSGYYVTMSNLYAYQDMWSGAVQVRDILQDKGLMKPRGRSII 915



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 146/539 (27%), Positives = 260/539 (48%), Gaps = 21/539 (3%)

Query: 5   SHHTLPKTTHLVIKLVQQYAATKSIA-----GTKQLHAFIITSGPLF-THLRSSLVRAYG 58
           +HH L +T      +V+   A +  +     G   LH   + S  +    +R+S++ AY 
Sbjct: 50  AHHLLDETPRRASSIVRALGACRGASREEADGVAALHCAALKSAAVLDPPVRTSVITAYS 109

Query: 59  HVSNV---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR-LGEYNPDNYTY 114
            V +V     +FDE +     L+N  +     N    D++ +F  M+  LG +  D+ + 
Sbjct: 110 RVRDVCSALQVFDEAAAPDLILWNAAISALTLNCRYGDAVVLFRWMVDVLGVF--DSTSM 167

Query: 115 PIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
            I++   +     + GIA HG  L    D D  + N L+ MY   G+  ++  VF  M  
Sbjct: 168 VIMLSGASRARSLEHGIAFHGMALKRRLDTDLSLWNTLMDMYAKCGDFYSSEVVFQRMPY 227

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI-EMGRM 233
               SWN+++SG   N  A+ +   F  M++S  + D  S+  VL AC +LK++   G  
Sbjct: 228 RDTTSWNSMVSGSLFNGLAEISAYYFKEMVRSSFQADEVSLSCVLSACSHLKDLFSFGES 287

Query: 234 IH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
           +H  ++  G      +  N+L+  Y + G    A  VF   S +++VTW +MI G   N 
Sbjct: 288 VHSSVIKLGYEDTTSSVENSLITFYYELGFPEAAEEVFLSTSNKNLVTWNAMIKGLVEND 347

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ-NLECEVIVE 351
            V  A+ +FQ M+ +  +P+  T+ +++SAC     L  G+ +H + IK+ ++  E  V 
Sbjct: 348 RVNEAMCMFQEMRSKN-QPDVATLVTIISACGDRGLLPEGKEVHGYIIKKGHIYEECSVG 406

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN-GLARKAVELFRQMLVEVV 410
            +L+D+Y KCN    +  +F     +  + WN +++G   N  L  +A  +F+ +L E +
Sbjct: 407 NSLLDLYMKCNDPSTARILFRTMPMRDLISWNTMISGYSRNDSLGEEAKAMFKGLLSEGL 466

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
               +T+ +++P+     DL    ++H ++++YGFL+ V  +  LI +Y  CG   +A  
Sbjct: 467 SCTLSTVVAVIPSCFCPQDLNFGKSVHSFILKYGFLTGVSAANSLIHMYICCGDSLAAFS 526

Query: 471 IFSEI-PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS-GVQPNEVTFTSALHAC 527
           +   I P+   DI+ W+  I G   +G    A+  F+ M  +  + P+ +T  S L  C
Sbjct: 527 LLESITPM--SDIISWNTAIVGCVQNGLYGDALEAFQFMHSTLTLNPDSITLVSVLSVC 583



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 141/507 (27%), Positives = 237/507 (46%), Gaps = 20/507 (3%)

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
           ALH   L +   +D  V   +I  Y    +V +A +VFD      ++ WN  IS    N 
Sbjct: 84  ALHCAALKSAAVLDPPVRTSVITAYSRVRDVCSALQVFDEAAAPDLILWNAAISALTLNC 143

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
              +A+V+F WM+      D  S+V +L      + +E G   H +    RL  +++ WN
Sbjct: 144 RYGDAVVLFRWMVDVLGVFDSTSMVIMLSGASRARSLEHGIAFHGMALKRRLDTDLSLWN 203

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            L+DMY KCG    + +VF RM  RD  +W SM++G   NG    +   F+ M     + 
Sbjct: 204 TLMDMYAKCGDFYSSEVVFQRMPYRDTTSWNSMVSGSLFNGLAEISAYYFKEMVRSSFQA 263

Query: 312 NSLTIGSLLSACSSLYYL-KRGRSLHAWTIKQNLE-CEVIVETALIDMYAKCNLVKLSFQ 369
           + +++  +LSACS L  L   G S+H+  IK   E     VE +LI  Y +    + + +
Sbjct: 264 DEVSLSCVLSACSHLKDLFSFGESVHSSVIKLGYEDTTSSVENSLITFYYELGFPEAAEE 323

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           VF  TS K  V WNA++ G V N    +A+ +F++M  +  +P+ ATL +++ A      
Sbjct: 324 VFLSTSNKNLVTWNAMIKGLVENDRVNEAMCMFQEMRSK-NQPDVATLVTIISACGDRGL 382

Query: 430 LQQAMNIHCYLIRYGFL-SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
           L +   +H Y+I+ G +     V   L+D+Y KC    +A  +F  +P+  +D++ W+ +
Sbjct: 383 LPEGKEVHGYIIKKGHIYEECSVGNSLLDLYMKCNDPSTARILFRTMPM--RDLISWNTM 440

Query: 489 IAGYGMHGH-GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN- 546
           I+GY  +   GE A ++FK ++  G+     T  + + +C     L+ G  + +F+L+  
Sbjct: 441 ISGYSRNDSLGEEAKAMFKGLLSEGLSCTLSTVVAVIPSCFCPQDLNFGKSVHSFILKYG 500

Query: 547 -----HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
                    S    Y C  D L        A+ L+ ++        W   +  CV +G  
Sbjct: 501 FLTGVSAANSLIHMYICCGDSLA-------AFSLLESITPMSDIISWNTAIVGCVQNGLY 553

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKL 628
                A +++      NP +  L+S L
Sbjct: 554 GDALEAFQFMHSTLTLNPDSITLVSVL 580


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 213/625 (34%), Positives = 334/625 (53%), Gaps = 43/625 (6%)

Query: 77  LYNTVMKMYAQNGASHDSLKMF-LGMLRLGEYNPDNYTYPI--VIKACTDLAWRKLGIAL 133
           L+N+ +K  A+ G    + + F L  L     N D   + I  ++ +CT+L     G  L
Sbjct: 5   LFNS-LKDLARKGHLLKAFETFSLIKLHASSANRDAILHSISSLLYSCTNLKSLPQGKQL 63

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H   +  GF+    +   L+  Y +F  +  A  +       + + WN LIS Y  N   
Sbjct: 64  HAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVNSDIVNPLPWNLLISSYVNNGLH 123

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK-NIAAWNA 252
            EAL  +  M+  GV PD  +  SVL ACG   +++ GR +HE +      + N+   N+
Sbjct: 124 GEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREVHESINAAYGHRWNLYVHNS 183

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           LV MY K G ++ AR +F++M ERD V+W  +I+ YA  G  + A  LF+ M+  G   N
Sbjct: 184 LVSMYGKFGELDAARRLFNQMPERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVN 243

Query: 313 SLTIGSL-----------------------------------LSACSSLYYLKRGRSLHA 337
            +T  ++                                   L ACS +  +K G  +HA
Sbjct: 244 IITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHA 303

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
             I+   +    V  ALI MY++C  ++ +  +F     K    WN++L+G  H   + +
Sbjct: 304 SAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEE 363

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY-GFLSVVEVSTGLI 456
           A  LFR+ML   +EPN  T+ S+LP  A +A+LQQ    HCY++R  GF   + +   L+
Sbjct: 364 ASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLV 423

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
           ++Y++ G + SA ++F  +  +DK  V ++ +IAGYG+ G G+TA+ LF EM++  ++P+
Sbjct: 424 EMYARSGKVLSAKRVFDSLRRRDK--VTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPD 481

Query: 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
           +VT  + L ACSH GL+ EG  LF  M   +      +H++C+VDL GRAG L++A  +I
Sbjct: 482 QVTMVAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVI 541

Query: 577 RTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWK 636
            +MP +PT A+W  L+GAC IHGN E+GE AA+ L E++PENPG YVL++ +++A  RW 
Sbjct: 542 TSMPYRPTTAMWATLVGACRIHGNTEIGEWAAEKLLEMKPENPGYYVLIANMHAAAGRWS 601

Query: 637 DAENVRDVMDEKGLRKAPAHSLIEV 661
               VR  M + G+RKAP  + ++V
Sbjct: 602 KLAEVRTYMRDLGVRKAPGCTWVDV 626



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 145/567 (25%), Positives = 258/567 (45%), Gaps = 63/567 (11%)

Query: 14  HLVIKLVQQYAATKSIAGTKQLHAFIITSG--------PLFTHLRSS---LVRAYGHVSN 62
           H +  L+      KS+   KQLHA  I+ G        P      SS   L  A+    N
Sbjct: 42  HSISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVN 101

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
             I+       +   +N ++  Y  NG   ++L  +  M+  G   PDN+TYP V+KAC 
Sbjct: 102 SDIV-------NPLPWNLLISSYVNNGLHGEALSAYREMVHKG-VRPDNFTYPSVLKACG 153

Query: 123 DLAWRKLGIALHGRV-LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWN 181
           +      G  +H  +    G   + +V N L++MY  FGE+ AAR++F+ M E   VSWN
Sbjct: 154 EKLDLDFGREVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWN 213

Query: 182 TLISGYFKNAYAKEALVVFDWMLKSGVEP------------------------------- 210
            +IS Y      KEA  +F+ M  +G E                                
Sbjct: 214 GIISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRC 273

Query: 211 ----DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
               D  +++  L AC ++  I++G +IH               NAL+ MY +C  +  A
Sbjct: 274 DIDLDPVAMIIGLGACSHIGAIKLGTVIHASAIRSCFDGFDNVRNALITMYSRCKDLRHA 333

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
            ++F  +  + + TW SM++GY        A  LF+ M F G+ PN +TI S+L  C+ +
Sbjct: 334 DILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILPHCARV 393

Query: 327 YYLKRGRSLHAWTI-KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
             L++G+  H + + ++  E  +++  +L++MYA+   V  + +VF    ++  V + ++
Sbjct: 394 ANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRRRDKVTYTSL 453

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL-IRYG 444
           +AG    G  + A++LF +M+   ++P+  T+ ++L A +    + +   +   +   YG
Sbjct: 454 IAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLSACSHSGLVTEGNVLFEKMSTLYG 513

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH---GETA 501
            +  VE  + ++D++ + G L  A K+ + +P +     +W+ ++    +HG+   GE A
Sbjct: 514 IVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYR-PTTAMWATLVGACRIHGNTEIGEWA 572

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACS 528
                EM      P      + +HA +
Sbjct: 573 AEKLLEMKPE--NPGYYVLIANMHAAA 597


>gi|359478617|ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 628

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 193/555 (34%), Positives = 322/555 (58%), Gaps = 7/555 (1%)

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           P  +    ++ +C       +GI LH  ++  GFD + ++ + L+ MY   G V +A+++
Sbjct: 77  PTAHILNRMVSSCAKSGSVFVGIQLHSTIIKVGFDSNVYICSALVDMYGKCGAVSSAQRL 136

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           FD M   +VV+WN+LISGY      + A+ +F  M+K G++P   SV +VL  C  +++ 
Sbjct: 137 FDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVGIDPTPFSVSAVLVGCWRMEDT 196

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
           ++G  +H L        NI     L+D+Y K  +++ +RL+FD M ER+++TWTSM+ GY
Sbjct: 197 KLGIQVHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLMFDLMPERNIITWTSMVAGY 256

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
           A       A+ L + MQ  G+R N +T   LLS+ SS   L   + +H   I++ LE   
Sbjct: 257 AHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLDHCKQVHCRIIREGLESNS 316

Query: 349 IVETALIDMYAKCNLVKLS--FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
            +E  L+ +Y++C+   L    +V +  ++   + WNA++ G  + G    A++ F +M 
Sbjct: 317 YLEVTLVTVYSECSSSSLEDFNKVCSGVTRWDQISWNAVIGGLSNLGNGEAALKCFSKMR 376

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
              ++ +  T  S+L A  +++ L +   IH  +++ G+ S + V  GL+ +Y++CGS+ 
Sbjct: 377 QAGIDMDLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSIN 436

Query: 467 SAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
            A ++FS   + D+ D++ W+ +++G   HG+G  AV LF++M +SGV+P+  TF   L 
Sbjct: 437 DAKRVFS---LMDRHDVISWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLS 493

Query: 526 ACSHGGLLDEGLDLFNFMLENHQTCS-RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
           AC H GLLD+GL+ F+ M  ++   S   +HY+ +VDL  RAG L EA D I TMP++P 
Sbjct: 494 ACRHVGLLDKGLEYFDLMRNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTMPIEPG 553

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
            +V+ ALL AC +HGNVE+    AK L ++ P +P  YVLLS + + V  W +  ++R V
Sbjct: 554 PSVYKALLSACQVHGNVEIAVRCAKKLLQMCPNDPVIYVLLSNVQATVGYWDNVASIRKV 613

Query: 645 MDEKGLRKAPAHSLI 659
           M ++G+RK P +S I
Sbjct: 614 MCDRGVRKEPGYSWI 628



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 141/521 (27%), Positives = 264/521 (50%), Gaps = 14/521 (2%)

Query: 6   HHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH---VS 61
            H    T H++ ++V   A + S+    QLH+ II  G     ++ S+LV  YG    VS
Sbjct: 72  QHGSAPTAHILNRMVSSCAKSGSVFVGIQLHSTIIKVGFDSNVYICSALVDMYGKCGAVS 131

Query: 62  NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC 121
           + + LFDEM  R+   +N+++  Y   G    ++++FL M+++G  +P  ++   V+  C
Sbjct: 132 SAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVG-IDPTPFSVSAVLVGC 190

Query: 122 TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWN 181
             +   KLGI +HG  +  GF  +  VG CLI +Y     + A+R +FD M E ++++W 
Sbjct: 191 WRMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLMFDLMPERNIITWT 250

Query: 182 TLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG 241
           ++++GY        A+V+   M + G+  +  +   +L +     +++  + +H  +   
Sbjct: 251 SMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLDHCKQVHCRIIRE 310

Query: 242 RLGKNIAAWNALVDMYVKC--GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
            L  N      LV +Y +C   S+ +   V   ++  D ++W ++I G +  G+   AL 
Sbjct: 311 GLESNSYLEVTLVTVYSECSSSSLEDFNKVCSGVTRWDQISWNAVIGGLSNLGNGEAALK 370

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
            F  M+  G+  +  T  S+L A   +  L  G+ +HA  +K      + V+  L+ MYA
Sbjct: 371 CFSKMRQAGIDMDLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYA 430

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           +C  +  + +VF+   +   + WN++L+GC ++G  R+AVELF QM    V+P++ T   
Sbjct: 431 RCGSINDAKRVFSLMDRHDVISWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLV 490

Query: 420 LLPAYAILADLQQAMNIHCYLIR--YGFLS-VVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           +L A   +  L + +  +  L+R  Y   S   E  + ++D++S+ G L  A    + +P
Sbjct: 491 VLSACRHVGLLDKGLE-YFDLMRNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTMP 549

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
           I+     V+  +++   +HG+ E AV   K+++Q  + PN+
Sbjct: 550 IEPGP-SVYKALLSACQVHGNVEIAVRCAKKLLQ--MCPND 587



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/432 (29%), Positives = 208/432 (48%), Gaps = 20/432 (4%)

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
           + G  P    +  ++ +C     + +G  +H  +       N+   +ALVDMY KCG+V+
Sbjct: 72  QHGSAPTAHILNRMVSSCAKSGSVFVGIQLHSTIIKVGFDSNVYICSALVDMYGKCGAVS 131

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
            A+ +FD M  R+VVTW S+I+GY   G    A+ LF  M   G+ P   ++ ++L  C 
Sbjct: 132 SAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVGIDPTPFSVSAVLVGCW 191

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
            +   K G  +H  ++K      ++V T LID+Y+K   +  S  +F    ++  + W +
Sbjct: 192 RMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLMFDLMPERNIITWTS 251

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           ++AG  H      A+ L R M    +  N  T N LL +++   DL     +HC +IR G
Sbjct: 252 MVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLDHCKQVHCRIIREG 311

Query: 445 FLSVVEVSTGLIDIYSKC--GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
             S   +   L+ +YS+C   SLE  +K+ S +   D+  + W+ +I G    G+GE A+
Sbjct: 312 LESNSYLEVTLVTVYSECSSSSLEDFNKVCSGVTRWDQ--ISWNAVIGGLSNLGNGEAAL 369

Query: 503 SLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDL 562
             F +M Q+G+  +  TFTS L A      LDEG  +   +L+     S  +    +V +
Sbjct: 370 KCFSKMRQAGIDMDLFTFTSVLRAIGMISTLDEGKQIHALVLKAGYG-SNLNVQNGLVSM 428

Query: 563 LGRAGRLDEAYDLIRTMPLKPTHAV--WGALLGACVIHGNVELGEVAAKWLFE------L 614
             R G +++A    R   L   H V  W +LL  C  HG    G  A + LFE      +
Sbjct: 429 YARCGSINDAK---RVFSLMDRHDVISWNSLLSGCAYHG---YGREAVE-LFEQMRRSGV 481

Query: 615 EPENPGNYVLLS 626
           +P+N    V+LS
Sbjct: 482 KPDNTTFLVVLS 493



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 127/237 (53%), Gaps = 2/237 (0%)

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L L   +Q  G  P +  +  ++S+C+    +  G  LH+  IK   +  V + +AL+DM
Sbjct: 64  LKLLAQLQQHGSAPTAHILNRMVSSCAKSGSVFVGIQLHSTIIKVGFDSNVYICSALVDM 123

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y KC  V  + ++F     +  V WN++++G +H G    A+ELF +M+   ++P   ++
Sbjct: 124 YGKCGAVSSAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVGIDPTPFSV 183

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +++L     + D +  + +H   ++ GF   + V T LID+YSK  +++++  +F  +P 
Sbjct: 184 SAVLVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLMFDLMP- 242

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
            +++I+ W+ ++AGY        A+ L ++M + G++ N VT+   L + S    LD
Sbjct: 243 -ERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSSNDLD 298


>gi|242051244|ref|XP_002463366.1| hypothetical protein SORBIDRAFT_02g042450 [Sorghum bicolor]
 gi|241926743|gb|EER99887.1| hypothetical protein SORBIDRAFT_02g042450 [Sorghum bicolor]
          Length = 745

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 209/587 (35%), Positives = 319/587 (54%), Gaps = 15/587 (2%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           YNT++          D+L     MLR G+  PD  T+ + +          L   LH   
Sbjct: 118 YNTILSATPD---PDDALAFAARMLRTGDVRPDAVTFTVTLSLAAGRGEAHLVRQLHALA 174

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY-AKEA 196
              G   D FVGN L+  Y   G + AARKVF+ M    +VSWN L+ G  ++   + E 
Sbjct: 175 SRAGIATDVFVGNALVTAYSRGGLMDAARKVFEEMPARDLVSWNALVCGLAQDGECSAEV 234

Query: 197 LVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           + VF  MLK G V PD  SV SV+PACG   ++E+GR IH       +  +++  N LV 
Sbjct: 235 IRVFLRMLKQGDVRPDRISVCSVIPACGAEGKLELGRQIHGFAVKLGVEGHVSIANVLVA 294

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           MY KCG+   AR +F+ M ERDV++WT++++   ++G+  +A+ LF  M+ +GV PN +T
Sbjct: 295 MYYKCGTPGCARRLFEFMGERDVISWTTVMS---MDGE--DAVSLFNGMRRDGVAPNEVT 349

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
             ++LS+       + G+ +HA  +K +L  +     +LI MYAK   +  +  +F+   
Sbjct: 350 FVAMLSSMPGDCPAREGQMIHAVCLKTSLSDKAAAANSLITMYAKLRRMDDARMIFSLMP 409

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
             + + WNA+++G   N + + A+E F  M+ ++++PN+ T  S+L A   +  +  A  
Sbjct: 410 HSEIIAWNALISGYAQNEMCQDALEAFLAMM-KIMKPNETTFASILSAVTAVETVSMAYG 468

Query: 436 --IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
              HC  ++ G  +   VS  LID+Y+K GSLE + K F E     + ++ W+ II+   
Sbjct: 469 QMYHCQALKLGLGASEYVSGALIDMYAKRGSLEESWKAFGET--VHRSLIAWTAIISANS 526

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
            HG+ +  VSLF +MV SGV P+ V   S L AC + G +  G ++F+ M   H      
Sbjct: 527 KHGNYDAVVSLFNDMVGSGVAPDGVVLLSVLTACRYSGFVSLGREIFDSMAAKHGAELWP 586

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
           +HY C+VD+LGRAGRL+EA +L+  MP  P+ +   +LLGAC IHGN ++GE  A  L E
Sbjct: 587 EHYACVVDMLGRAGRLEEAEELMLQMPSGPSVSALQSLLGACRIHGNTDVGERVASVLTE 646

Query: 614 LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
            EP   G YVLLS +Y+    W     VR  M E+G++K    S ++
Sbjct: 647 TEPTESGAYVLLSNIYAEKGDWGAVARVRRQMRERGVKKEVGFSWVD 693



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 122/482 (25%), Positives = 219/482 (45%), Gaps = 30/482 (6%)

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
           A H   + +G      V N L A Y       AA +VF A       S+NT++S      
Sbjct: 70  AFHALAVASGLAAFAPVTNSLAARYAKGNSFPAAARVFAAARSRDTRSYNTILSA---TP 126

Query: 192 YAKEALVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
              +AL     ML++G V PD  +    L       E  + R +H L +   +  ++   
Sbjct: 127 DPDDALAFAARMLRTGDVRPDAVTFTVTLSLAAGRGEAHLVRQLHALASRAGIATDVFVG 186

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR-NALGLFQLMQFEG- 308
           NALV  Y + G ++ AR VF+ M  RD+V+W +++ G A +G+     + +F  M  +G 
Sbjct: 187 NALVTAYSRGGLMDAARKVFEEMPARDLVSWNALVCGLAQDGECSAEVIRVFLRMLKQGD 246

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           VRP+ +++ S++ AC +   L+ GR +H + +K  +E  V +   L+ MY KC     + 
Sbjct: 247 VRPDRISVCSVIPACGAEGKLELGRQIHGFAVKLGVEGHVSIANVLVAMYYKCGTPGCAR 306

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           ++F    ++  + W  +++    +G    AV LF  M  + V PN+ T  ++L +     
Sbjct: 307 RLFEFMGERDVISWTTVMS---MDG--EDAVSLFNGMRRDGVAPNEVTFVAMLSSMPGDC 361

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
             ++   IH   ++         +  LI +Y+K   ++ A  IFS +P    +I+ W+ +
Sbjct: 362 PAREGQMIHAVCLKTSLSDKAAAANSLITMYAKLRRMDDARMIFSLMP--HSEIIAWNAL 419

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           I+GY  +   + A+  F  M++  ++PNE TF S L A +        ++  +       
Sbjct: 420 ISGYAQNEMCQDALEAFLAMMKI-MKPNETTFASILSAVT-------AVETVSMAYGQMY 471

Query: 549 TCSR------ADHYT--CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
            C        A  Y    ++D+  + G L+E++       +  +   W A++ A   HGN
Sbjct: 472 HCQALKLGLGASEYVSGALIDMYAKRGSLEESWKAFGET-VHRSLIAWTAIISANSKHGN 530

Query: 601 VE 602
            +
Sbjct: 531 YD 532


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 203/616 (32%), Positives = 319/616 (51%), Gaps = 6/616 (0%)

Query: 51  SSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           S+LV  Y   +++     +F E+ +++   ++  +    QN      LK+F  M R G  
Sbjct: 196 SALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKG-I 254

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
                TY  V ++C  L+  +LG  LH   L T F  D  VG   + MY     +  A K
Sbjct: 255 GVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYK 314

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F  + +H++ S+N +I GY +N    +A  +F  + K+    D  S+   L A   +K 
Sbjct: 315 LFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKG 374

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
              G  +H L     L  NI   NA++DMY KCG++ EA  +FD M  RD V+W ++I  
Sbjct: 375 HSEGLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITA 434

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
              N      L  F  M    + P+  T GS+L AC+       G  +H   IK  +  +
Sbjct: 435 CEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLK 494

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           + V +AL+DMY+KC +++ + ++  R  ++  V WNAI++G      +  +   F  ML 
Sbjct: 495 MFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLE 554

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
             VEP++ T  ++L   A LA +     IH  +I+   LS V +++ L+D+YSKCG++  
Sbjct: 555 MGVEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHD 614

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           +  +F + P +D   V W+ +I G+  HG GE A+ LF+ M+   ++PN  TF S L AC
Sbjct: 615 SLLMFRKAPKRDS--VTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRAC 672

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           SH G   +GL  F  M   +    + +HY+C+VD+LGR+G+++EA  LI+ MP +    +
Sbjct: 673 SHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAII 732

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           W  LL  C I GNVE+ E AA  L +L+PE+   Y LLS +Y+    W+    +R  M  
Sbjct: 733 WRTLLSICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMRS 792

Query: 648 KGLRKAPAHSLIEVRN 663
             L+K P  S IEV++
Sbjct: 793 HNLKKEPGCSWIEVKD 808



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 156/574 (27%), Positives = 274/574 (47%), Gaps = 11/574 (1%)

Query: 58  GHVSNVRILFDEMSERSSFL-YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           G +   + +F+ M      + +N+++  Y QNG    S+ +FL M  LG    D+ T  +
Sbjct: 104 GRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLG-VMFDHTTLAV 162

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
            +K C+ L  + LGI +HG  +  GFD D   G+ L+ MY     ++ +  VF  + + +
Sbjct: 163 SLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKN 222

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
            +SW+  I+G  +N      L +F  M + G+    ++  SV  +C  L    +G  +H 
Sbjct: 223 WISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHC 282

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
                  G ++    A +DMY KC ++++A  +F  + + ++ ++ +MI GYA N     
Sbjct: 283 HALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQ 342

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A  LF  +Q      + +++   LSA + +     G  LH   IK NL   + V  A++D
Sbjct: 343 AFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILD 402

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY KC  +  +  +F     +  V WNAI+  C  N    K +  F  ML   +EP++ T
Sbjct: 403 MYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFT 462

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
             S+L A A        M +H  +I+ G    + V + L+D+YSKCG +E A KI     
Sbjct: 463 YGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKI--HYR 520

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           ++++ +V W+ II+G+ +    E +   F  M++ GV+P+  T+ + L  C++   +  G
Sbjct: 521 LEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLG 580

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
             +   M++  +  S     + +VD+  + G + ++  + R  P K     W A++    
Sbjct: 581 KQIHAQMIK-LELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAP-KRDSVTWNAMICGFA 638

Query: 597 IHGNVELGEVAAKWLFELEPEN--PGNYVLLSKL 628
            HG   LGE A +    +  EN  P +   +S L
Sbjct: 639 YHG---LGEEALELFEHMLHENIKPNHATFVSVL 669



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 146/551 (26%), Positives = 261/551 (47%), Gaps = 60/551 (10%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNF------------- 159
           T+  + + C++    K G   H  ++++GF    FV NCLI MY+               
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 160 ------------------GEVKAARKVFDAMWEH-SVVSWNTLISGYFKNAYAKEALVVF 200
                             G ++ A+ VF++M  H  VVSWN+LISGY +N   ++++ VF
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
             M   GV  D  ++   L  C  L++  +G  IH +        ++   +ALVDMY KC
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKC 205

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
            S+ ++  VF  + +++ ++W++ I G   N  +   L LF+ MQ +G+  +  T  S+ 
Sbjct: 206 NSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVF 265

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
            +C+ L   + G  LH   +K +   +VIV TA +DMYAKC+ +  ++++F+        
Sbjct: 266 RSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQ 325

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            +NA++ G   N    +A +LF Q+       ++ +L+  L A A++    + + +H   
Sbjct: 326 SYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLA 385

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           I+    S + V+  ++D+Y KCG+L  A  +F E+ I+D   V W+ II     +     
Sbjct: 386 IKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDP--VSWNAIITACEQNESEGK 443

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGGLLDEGLDLFNFMLENHQT 549
            +S F  M++S ++P+E T+ S L AC+           HG ++  G+ L  F+      
Sbjct: 444 TLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFV------ 497

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
                  + +VD+  + G ++EA + I     + T   W A++    +    E  +    
Sbjct: 498 ------GSALVDMYSKCGMMEEA-EKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFS 550

Query: 610 WLFEL--EPEN 618
            + E+  EP+N
Sbjct: 551 HMLEMGVEPDN 561


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 194/532 (36%), Positives = 316/532 (59%), Gaps = 6/532 (1%)

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGE--VKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           +++TGF       N LIA  ++ G   V  A  VF       V++WN+++  +  +   +
Sbjct: 1   MVVTGFIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPR 60

Query: 195 EALVVFDWML-KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
            AL  +  ML +S   PD  +  S+L  C  L E ++G+++H  V    L  ++     L
Sbjct: 61  RALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTL 120

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           ++MY  CG +  AR +F+RM  R+ V WTSMI+GY  N     AL L++ M+ +G  P+ 
Sbjct: 121 LNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDE 180

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
           +T+ +L+SAC+ L  L  G  LH+   + +++   ++ +AL++MYAKC  +K + QVF +
Sbjct: 181 VTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQ 240

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQML-VEVVEPNDATLNSLLPAYAILADLQQ 432
            S K    W+A++ G V N  + +A++LFR++     + PN+ T+ +++ A A L DL+ 
Sbjct: 241 LSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLET 300

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              +H Y+ R      V ++  LID++SKCG +++A +IF  +    KD++ W+ ++ G 
Sbjct: 301 GRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSY--KDLISWNSMVNGL 358

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
            +HG G  A++ F  M  + +QP+E+TF   L ACSH GL+ EG  LF  +   +    +
Sbjct: 359 ALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLK 418

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
           ++HY C+VDLL RAG L EA + IR MPL+P  A+WG++LGAC ++ N+ELGE AA+ L 
Sbjct: 419 SEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLL 478

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
           ELEP N G Y+LLS +Y+  + W + + VR++M+EKG++K P  S + + NI
Sbjct: 479 ELEPTNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNI 530



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 134/477 (28%), Positives = 242/477 (50%), Gaps = 16/477 (3%)

Query: 46  FTHLRSSLVRAYGHVSNVRIL--------FDEMSERSSFLYNTVMKMYAQNGASHDSLKM 97
           F H + SL +   HV ++  L        F          +N++++ +  +     +L+ 
Sbjct: 6   FIHHKPSLNKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQS 65

Query: 98  FLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYM 157
           +  ML      PD +T+P ++K C  L   K+G  LHG+V+      D ++   L+ MY 
Sbjct: 66  YTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYA 125

Query: 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVS 217
             G++K+AR +F+ M   + V W ++ISGY KN    EAL+++  M + G  PD  ++ +
Sbjct: 126 ACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMAT 185

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           ++ AC  LK++ +G  +H  +    +       +ALV+MY KCG +  AR VFD++S++D
Sbjct: 186 LVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKD 245

Query: 278 VVTWTSMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
           V  W+++I GY  N     AL LF ++     +RPN +TI +++SAC+ L  L+ GR +H
Sbjct: 246 VYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVH 305

Query: 337 AWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR 396
            +  +      V +  +LIDM++KC  +  + ++F   S K  + WN+++ G   +GL R
Sbjct: 306 DYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGR 365

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR--YGFLSVVEVSTG 454
           +A+  F  M    ++P++ T   +L A +    +Q+   +  Y I   YG     E    
Sbjct: 366 EALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLF-YEIEALYGVRLKSEHYGC 424

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH---GETAVSLFKEM 508
           ++D+  + G L  A +    +P++  D  +W  ++    ++ +   GE A     E+
Sbjct: 425 MVDLLCRAGLLAEAREFIRVMPLQ-PDGAIWGSMLGACRVYNNLELGEEAARCLLEL 480


>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
          Length = 763

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 207/584 (35%), Positives = 319/584 (54%), Gaps = 11/584 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG--PLFTHLRSSLVRAYGH---VSNVRILFDEMSER 73
           L+   +  +S+   +++H  ++ S   P  T L++ ++  YG    + + + +FD M ER
Sbjct: 69  LISACSYLRSLEHGRKIHDHMLKSKSHPDLT-LQNHILNMYGKCGSLKDAQKVFDAMPER 127

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           +   + +V+  Y+QNG   ++L+ +  ML+ G   PD +T+  +IKAC+ L    LG  L
Sbjct: 128 NVVSWTSVIAGYSQNGQGGNALEFYFQMLQSG-VMPDQFTFGSIIKACSSLGDIGLGRQL 186

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H  VL + F       N LI+MY     +  A  VF  M    ++SW ++I+G+ +  Y 
Sbjct: 187 HAHVLKSEFGAHIIAQNALISMYTKSNVIIDALDVFSRMATRDLISWGSMIAGFSQLGYE 246

Query: 194 KEALVVFDWMLKSGVE-PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            EAL  F  ML  GV  P+     SV  AC  L + E GR +H +     LG+++ A  +
Sbjct: 247 LEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCS 306

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L DMY KCG ++ AR+VF ++   D+V W ++I G+A  GD + A+  F  M+ +G+ P+
Sbjct: 307 LCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPD 366

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            +T+ SLL AC+S   L +G  +H +  K  L+ +V V   L+ MYAKC+ ++ +   F 
Sbjct: 367 EITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFE 426

Query: 373 RT-SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
                   V WNAIL  C+H+  A +   L + M +    P+  TL ++L A A    ++
Sbjct: 427 EMRCNADLVSWNAILTACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVLGASAETVSIE 486

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               +HCY ++ G    + V+ GLID+Y+KCGSL++A KIF  +   + D+V WS +I G
Sbjct: 487 IGNQVHCYALKTGLNCDISVTNGLIDLYAKCGSLKTARKIFDSVI--NPDVVSWSSLILG 544

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           Y   G+GE A+ LFK M +  V+PN VTF   L ACSH GL++EG  L+  M +      
Sbjct: 545 YAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEGWQLYGTMEKEFGIVP 604

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
             +H +C+VDLL RAG L+EA   I  M   P   VW  LL AC
Sbjct: 605 TREHCSCMVDLLARAGCLNEAEAFIHQMAFDPDIVVWKTLLAAC 648



 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 182/526 (34%), Positives = 267/526 (50%), Gaps = 35/526 (6%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           TY  +I AC+ L   + G  +H  +L +    D  + N ++ MY   G +K A+KVFDAM
Sbjct: 65  TYAYLISACSYLRSLEHGRKIHDHMLKSKSHPDLTLQNHILNMYGKCGSLKDAQKVFDAM 124

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
            E +VVSW ++I+GY +N     AL  +  ML+SGV PD  +  S++ AC  L +I +GR
Sbjct: 125 PERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGR 184

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            +H  V     G +I A NAL+ MY K   + +A  VF RM+ RD+++W SMI G++  G
Sbjct: 185 QLHAHVLKSEFGAHIIAQNALISMYTKSNVIIDALDVFSRMATRDLISWGSMIAGFSQLG 244

Query: 293 DVRNALGLFQLMQFEGVR-PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
               AL  F+ M  +GV  PN    GS+ SACSSL   + GR LH  +IK  L  +V   
Sbjct: 245 YELEALCYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAG 304

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
            +L DMYAKC L+  +  VF +  +   V WNAI+AG  + G A++A+  F QM  + + 
Sbjct: 305 CSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLI 364

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           P++ T+ SLL A    ++L Q M +H Y+ + G    V V   L+ +Y+KC  L  A   
Sbjct: 365 PDEITVRSLLCACTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFF 424

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS--- 528
           F E+   + D+V W+ I+     H   E    L K M  S  +P+ +T T+ L A +   
Sbjct: 425 FEEMRC-NADLVSWNAILTACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVLGASAETV 483

Query: 529 --------HGGLLDEGLD----LFNFMLENHQTCSRADHYTCIVD-------------LL 563
                   H   L  GL+    + N +++ +  C        I D             +L
Sbjct: 484 SIEIGNQVHCYALKTGLNCDISVTNGLIDLYAKCGSLKTARKIFDSVINPDVVSWSSLIL 543

Query: 564 GRA--GRLDEAYDLIRTM---PLKPTHAVWGALLGACVIHGNVELG 604
           G A  G  +EA  L +TM    +KP H  +  +L AC   G VE G
Sbjct: 544 GYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLVEEG 589



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 137/429 (31%), Positives = 224/429 (52%), Gaps = 11/429 (2%)

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           S N  I+   K     EA+  F+++ K +G     ++   ++ AC YL+ +E GR IH+ 
Sbjct: 29  SSNEYITTLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGRKIHDH 88

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +   +   ++   N +++MY KCGS+ +A+ VFD M ER+VV+WTS+I GY+ NG   NA
Sbjct: 89  MLKSKSHPDLTLQNHILNMYGKCGSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNA 148

Query: 298 LGL-FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           L   FQ++Q  GV P+  T GS++ ACSSL  +  GR LHA  +K      +I + ALI 
Sbjct: 149 LEFYFQMLQ-SGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALIS 207

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE-VVEPNDA 415
           MY K N++  +  VF+R + +  + W +++AG    G   +A+  F++ML + V  PN+ 
Sbjct: 208 MYTKSNVIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEF 267

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
              S+  A + L   +    +H   I++G    V     L D+Y+KCG L  A  +F + 
Sbjct: 268 IFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQ- 326

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
            I   D+V W+ IIAG+   G  + A++ F +M   G+ P+E+T  S L AC+    L +
Sbjct: 327 -IGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQ 385

Query: 536 GLDLFNFMLENHQTCSRADHYTC--IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
           G+ +  ++   ++     D   C  ++ +  +   L +A      M        W A+L 
Sbjct: 386 GMQVHGYI---NKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILT 442

Query: 594 ACVIHGNVE 602
           AC+ H   E
Sbjct: 443 ACMHHDQAE 451


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 180/550 (32%), Positives = 309/550 (56%), Gaps = 35/550 (6%)

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK- 205
           F  N L++   +   +     +F +M +  +VS+N +I+G+       +A+ V+  +L+ 
Sbjct: 73  FTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQA 132

Query: 206 -SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVK----- 259
            S V P   ++ +++ A   L +  +G+  H  +     G N    + LVDMY K     
Sbjct: 133 DSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVG 192

Query: 260 --------------------------CGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
                                     C  V EAR +F+ M++RD +TWT+M+ G+  NG 
Sbjct: 193 DAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGL 252

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              AL +F+ M+F+G+  +  T GS+L+AC +L  L++G+ +HA+ I+   +  V V +A
Sbjct: 253 ESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSA 312

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           L+DMY+KC  +KL+  VF R + K  + W A++ G   NG + +AV +F +M  + ++P+
Sbjct: 313 LVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPD 372

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
           D TL S++ + A LA L++    HC  +  G +  + VS  L+ +Y KCGS+E AH++F 
Sbjct: 373 DYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFD 432

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
           E+   D+  V W+ +++GY   G  +  + LF++M+  GV+P+ VTF   L ACS  G +
Sbjct: 433 EMSFHDQ--VSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFV 490

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
           ++G   F+ M ++H      DHYTC++DL  R+G+L EA + I+ MP+ P    WG LL 
Sbjct: 491 EKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLS 550

Query: 594 ACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKA 653
           AC + G++E+G+ AA+ L E++P+NP +YVLL  +++A  +W +   +R  M ++ ++K 
Sbjct: 551 ACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKE 610

Query: 654 PAHSLIEVRN 663
           P  S I+ +N
Sbjct: 611 PGCSWIKYKN 620



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 150/555 (27%), Positives = 275/555 (49%), Gaps = 43/555 (7%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGP-LFTHLRSSLVRAYGH---VSNVRI 65
           P  T+L+  L+  Y      A  +++  F     P LFT+  ++L+    H   +S++  
Sbjct: 38  PPPTYLLNHLLTAYGKAGRHARARRV--FDAMPHPNLFTY--NALLSTLAHARLLSDMEA 93

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL-GEYNPDNYTYPIVIKACTDL 124
           LF  M++R    YN V+  ++  G+   +++++L +L+      P   T   ++ A + L
Sbjct: 94  LFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASAL 153

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMN----------FGEVKA---------- 164
             R LG   H ++L  GF  + FVG+ L+ MY            F EV +          
Sbjct: 154 GDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMI 213

Query: 165 -----------ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCA 213
                      AR++F+ M +   ++W T+++G+ +N    EAL +F  M   G+  D  
Sbjct: 214 TGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQY 273

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           +  S+L ACG L  +E G+ IH  +   R   N+   +ALVDMY KC S+  A  VF RM
Sbjct: 274 TFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRM 333

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
           + +++++WT++I GY  NG    A+ +F  MQ +G+ P+  T+GS++S+C++L  L+ G 
Sbjct: 334 TCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGA 393

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
             H   +   L   + V  AL+ +Y KC  ++ + ++F   S    V W A+++G    G
Sbjct: 394 QFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFG 453

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN-IHCYLIRYGFLSVVEVS 452
            A++ ++LF +ML + V+P+  T   +L A +    +++  +  H     +G + + +  
Sbjct: 454 RAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHY 513

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
           T +ID+YS+ G L+ A +   ++P+   D + W  +++   + G  E      + +++  
Sbjct: 514 TCMIDLYSRSGKLKEAEEFIKQMPMH-PDAIGWGTLLSACRLRGDMEIGKWAAENLLEID 572

Query: 513 VQ-PNEVTFTSALHA 526
            Q P       ++HA
Sbjct: 573 PQNPASYVLLCSMHA 587


>gi|449489376|ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g69350, mitochondrial-like
           [Cucumis sativus]
          Length = 804

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 206/634 (32%), Positives = 348/634 (54%), Gaps = 10/634 (1%)

Query: 33  KQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +++H  II SG    P+      S+    G++ + R +F EM  R    +++++    +N
Sbjct: 119 QRVHGRIIKSGFDMDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVEN 178

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G  ++ L  F  M+  G   PD+     V++AC +L   +L  + HG +L  G + D FV
Sbjct: 179 GEINEGLDAFRCMVSEGG-TPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFV 237

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            + LI MY   G +++A  VF+ +   S  +W  +IS Y    Y KEAL +F  M K+ V
Sbjct: 238 DSSLIFMYAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEV 297

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN-ALVDMYVKCGSVNEAR 267
           EP+  ++  +L +C  L  +  G+ +H +V    L  N+      L+++Y      +   
Sbjct: 298 EPNSVTMRIILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCE 357

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +   +  R +  W ++I+ YA  G ++  + LF  MQ +G  P+S ++ S LSA  +  
Sbjct: 358 KILHEIGGRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEG 417

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L+ G  +H   IK+    E +   +LI+MY+KC  V L++ +F +   K  V WN++++
Sbjct: 418 ELQLGLQIHGHVIKRPFMDEYVF-NSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMIS 476

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G   NG + KA+ LF  M V   E  +    S++ A + L  L++   IH  LI  G   
Sbjct: 477 GLSQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRK 536

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            + + T L+D+Y+KCG L++A ++F  +   ++ +V WS +I+ YG+HG     + LF +
Sbjct: 537 CIFIETALVDMYAKCGDLQTAQRVFDNM--SERSVVSWSSLISSYGVHGQISEVIFLFSK 594

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M++SG++PN+VT  + L ACSH G + EG+  FN M  +     + +H+ CIVDLL RAG
Sbjct: 595 MLESGIKPNDVTVMNVLSACSHAGCVKEGMLFFNSM-RDFGIEPKREHFVCIVDLLSRAG 653

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
            LDEAY++I+ MP  P  ++WGALL  C IH  +++ +   + L+ ++ ++ G+Y LLS 
Sbjct: 654 DLDEAYEIIKLMPFPPGASIWGALLNGCRIHQRMDIAKNIQRELWNIQTDDTGHYTLLSN 713

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +Y+A   W +   VR +M   GL+K PA+S++E+
Sbjct: 714 IYAAGGEWNEFGEVRSMMKGTGLKKVPAYSVVEL 747



 Score =  258 bits (659), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 173/587 (29%), Positives = 309/587 (52%), Gaps = 17/587 (2%)

Query: 23  YAATKSIAGTKQLHAFIITSGPLFTHLRSS-LVRAYGHVSNVRI---LFDEMSERSSFLY 78
           + A+ ++    QLHA II +      L S+ L+ +Y  + +++    +F       SF++
Sbjct: 8   FKASTTLRQLAQLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMW 67

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
             ++K +  NG   +++ ++  ML   +   ++YT+P V++AC+      +G  +HGR++
Sbjct: 68  GVLLKSHVWNGCYQEAISLYHQMLS-QQIQANSYTFPSVLRACSGFGDLGVGQRVHGRII 126

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
            +GFDMD  V   L+++Y   G + +ARKVF  M    +VSW+++IS   +N    E L 
Sbjct: 127 KSGFDMDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLD 186

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
            F  M+  G  PD   V++V+ ACG L  + + +  H  +    +  +    ++L+ MY 
Sbjct: 187 AFRCMVSEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFMYA 246

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           KCGS+  A +VF+ ++ R   TWT+MI+ Y L G ++ AL LF  MQ   V PNS+T+  
Sbjct: 247 KCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRI 306

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEV-IVETALIDMYAKCNLVKLSFQVFARTSKK 377
           +L +C++L  L+ G+S+H   IK +L+  +  +   L+++YA      L  ++      +
Sbjct: 307 ILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGR 366

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
               WN +++     GL ++ V+LF +M  +   P+  +L S L A     +LQ  + IH
Sbjct: 367 GIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIH 426

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            ++I+  F+    V   LI++YSKCG ++ A+ IF +  ++ K +V W+ +I+G   +G+
Sbjct: 427 GHVIKRPFMDEY-VFNSLINMYSKCGYVDLAYMIFDQ--MEPKGVVTWNSMISGLSQNGY 483

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY- 556
              A+SLF  M  +  +  EV F S + ACSH G L++G  + + ++    TC       
Sbjct: 484 STKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLI----TCGVRKCIF 539

Query: 557 --TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
             T +VD+  + G L  A  +   M  +     W +L+ +  +HG +
Sbjct: 540 IETALVDMYAKCGDLQTAQRVFDNMSERSV-VSWSSLISSYGVHGQI 585



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/499 (27%), Positives = 257/499 (51%), Gaps = 8/499 (1%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAYGHVSNVR---ILFDEM 70
           LV+ +V+       +   K  H +I+  G      + SSL+  Y    ++R   I+F+ +
Sbjct: 202 LVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVFENV 261

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
           + RS+  +  ++  Y   G   ++L +F+ M +  E  P++ T  I++++CT+L+  + G
Sbjct: 262 TYRSTSTWTAMISSYNLGGYLKEALALFVSMQKT-EVEPNSVTMRIILRSCTNLSLLREG 320

Query: 131 IALHGRVLITGFDMD-TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
            ++H  V+    D +   +G  L+ +Y    +     K+   +    +  WNTLIS Y +
Sbjct: 321 KSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVWNTLISVYAQ 380

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
               KE + +F  M K G  PD  S+ S L A G   E+++G  IH  V   R   +   
Sbjct: 381 KGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIK-RPFMDEYV 439

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
           +N+L++MY KCG V+ A ++FD+M  + VVTW SMI+G + NG    A+ LF LM     
Sbjct: 440 FNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCP 499

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
               +   S++ ACS L +L++G+ +H   I   +   + +ETAL+DMYAKC  ++ + +
Sbjct: 500 EIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFIETALVDMYAKCGDLQTAQR 559

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           VF   S++  V W+++++    +G   + + LF +ML   ++PND T+ ++L A +    
Sbjct: 560 VFDNMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVMNVLSACSHAGC 619

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           +++ M     +  +G     E    ++D+ S+ G L+ A++I   +P       +W  ++
Sbjct: 620 VKEGMLFFNSMRDFGIEPKREHFVCIVDLLSRAGDLDEAYEIIKLMPFP-PGASIWGALL 678

Query: 490 AGYGMHGHGETAVSLFKEM 508
            G  +H   + A ++ +E+
Sbjct: 679 NGCRIHQRMDIAKNIQREL 697


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 204/605 (33%), Positives = 317/605 (52%), Gaps = 3/605 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +++ R LFD M ER+   + T+++ +AQ G    +  +F   LR   +  + +    +
Sbjct: 110 GPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALF-RRLRWEGHEVNQFVLTTM 168

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +K    +    L   +H      G D + FVG+ LI  Y     V  A  VF+ +     
Sbjct: 169 LKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDA 228

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V W  ++S Y +N   + A  VF  M  SG +P+  ++ SVL A   L  + +G+ IH  
Sbjct: 229 VVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGC 288

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                         AL+DMY KCG + +ARL F+ +   DV+  + MI+ YA +     A
Sbjct: 289 AIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQA 348

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
             LF  +    V PN  ++ S+L AC+++  L  G+ +H   IK   E ++ V  AL+D 
Sbjct: 349 FELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDF 408

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAKCN +  S ++F+       V WN I+ G   +GL  +A+ +F +M    +     T 
Sbjct: 409 YAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTY 468

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +S+L A A  A ++ A  IHC + +  F +   +   LID Y+KCG +  A K+F  +  
Sbjct: 469 SSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHL-- 526

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            ++DI+ W+ II+GY +HG    A+ LF  M +S V+ N++TF + L  CS  GL++ GL
Sbjct: 527 MERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGL 586

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
            LF+ M  +H      +HYTCIV LLGRAGRL++A   I  +P  P+  VW ALL +C+I
Sbjct: 587 SLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCII 646

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           H NV LG  +A+ + E+EP++   YVLLS +Y+A         +R  M   G+RK P  S
Sbjct: 647 HKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLS 706

Query: 658 LIEVR 662
            +E++
Sbjct: 707 WVEIK 711


>gi|449453035|ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial-like [Cucumis sativus]
          Length = 804

 Score =  357 bits (917), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 206/634 (32%), Positives = 348/634 (54%), Gaps = 10/634 (1%)

Query: 33  KQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +++H  II SG    P+      S+    G++ + R +F EM  R    +++++    +N
Sbjct: 119 QRVHGRIIKSGFDMDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVEN 178

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G  ++ L  F  M+  G   PD+     V++AC +L   +L  + HG +L  G + D FV
Sbjct: 179 GEINEGLDAFRCMVSEGG-TPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFV 237

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            + LI MY   G +++A  VF+ +   S  +W  +IS Y    Y KEAL +F  M K+ V
Sbjct: 238 DSSLIFMYAKCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEV 297

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN-ALVDMYVKCGSVNEAR 267
           EP+  ++  +L +C  L  +  G+ +H +V    L  N+      L+++Y      +   
Sbjct: 298 EPNSVTMRIILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCE 357

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +   +  R +  W ++I+ YA  G ++  + LF  MQ +G  P+S ++ S LSA  +  
Sbjct: 358 KILHEIGGRGIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEG 417

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L+ G  +H   IK+    E +   +LI+MY+KC  V L++ +F +   K  V WN++++
Sbjct: 418 ELQLGLQIHGHVIKRPFMDEYVF-NSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMIS 476

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G   NG + KA+ LF  M V   E  +    S++ A + L  L++   IH  LI  G   
Sbjct: 477 GLSQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRK 536

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            + + T L+D+Y+KCG L++A ++F  +   ++ +V WS +I+ YG+HG     + LF +
Sbjct: 537 CIFIETALVDMYAKCGDLQTAQRVFDNM--SERSVVSWSSLISSYGVHGQISEVIFLFSK 594

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M++SG++PN+VT  + L ACSH G + EG+  FN M  +     + +H+ CIVDLL RAG
Sbjct: 595 MLESGIKPNDVTVMNVLSACSHAGCVKEGMLFFNSM-RDFGIEPKREHFVCIVDLLSRAG 653

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
            LDEAY++I+ MP  P  ++WGALL  C IH  +++ +   + L+ ++ ++ G+Y LLS 
Sbjct: 654 DLDEAYEIIKLMPFPPGASIWGALLNGCRIHQRMDIAKNIQRELWNIQTDDTGHYTLLSN 713

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +Y+A   W +   VR +M   GL+K PA+S++E+
Sbjct: 714 IYAAGGEWNEFGEVRSMMKGTGLKKVPAYSVVEL 747



 Score =  258 bits (658), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 173/587 (29%), Positives = 309/587 (52%), Gaps = 17/587 (2%)

Query: 23  YAATKSIAGTKQLHAFIITSGPLFTHLRSS-LVRAYGHVSNVRI---LFDEMSERSSFLY 78
           + A+ ++    QLHA II +      L S+ L+ +Y  + +++    +F       SF++
Sbjct: 8   FKASTTLRTLAQLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMW 67

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
             ++K +  NG   +++ ++  ML   +   ++YT+P V++AC+      +G  +HGR++
Sbjct: 68  GVLLKSHVWNGCYQEAISLYHQMLS-QQIQANSYTFPSVLRACSGFGDLGVGQRVHGRII 126

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
            +GFDMD  V   L+++Y   G + +ARKVF  M    +VSW+++IS   +N    E L 
Sbjct: 127 KSGFDMDPVVNTALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLD 186

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
            F  M+  G  PD   V++V+ ACG L  + + +  H  +    +  +    ++L+ MY 
Sbjct: 187 AFRCMVSEGGTPDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFMYA 246

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           KCGS+  A +VF+ ++ R   TWT+MI+ Y L G ++ AL LF  MQ   V PNS+T+  
Sbjct: 247 KCGSLRSAEIVFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRI 306

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEV-IVETALIDMYAKCNLVKLSFQVFARTSKK 377
           +L +C++L  L+ G+S+H   IK +L+  +  +   L+++YA      L  ++      +
Sbjct: 307 ILRSCTNLSLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGR 366

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
               WN +++     GL ++ V+LF +M  +   P+  +L S L A     +LQ  + IH
Sbjct: 367 GIAVWNTLISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIH 426

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            ++I+  F+    V   LI++YSKCG ++ A+ IF +  ++ K +V W+ +I+G   +G+
Sbjct: 427 GHVIKRPFMDEY-VFNSLINMYSKCGYVDLAYMIFDQ--MEPKGVVTWNSMISGLSQNGY 483

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY- 556
              A+SLF  M  +  +  EV F S + ACSH G L++G  + + ++    TC       
Sbjct: 484 STKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLI----TCGVRKCIF 539

Query: 557 --TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
             T +VD+  + G L  A  +   M  +     W +L+ +  +HG +
Sbjct: 540 IETALVDMYAKCGDLQTAQRVFDNMSERSV-VSWSSLISSYGVHGQI 585



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/499 (27%), Positives = 257/499 (51%), Gaps = 8/499 (1%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAYGHVSNVR---ILFDEM 70
           LV+ +V+       +   K  H +I+  G      + SSL+  Y    ++R   I+F+ +
Sbjct: 202 LVLTVVEACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVFENV 261

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
           + RS+  +  ++  Y   G   ++L +F+ M +  E  P++ T  I++++CT+L+  + G
Sbjct: 262 TYRSTSTWTAMISSYNLGGYLKEALALFVSMQKT-EVEPNSVTMRIILRSCTNLSLLREG 320

Query: 131 IALHGRVLITGFDMD-TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
            ++H  V+    D +   +G  L+ +Y    +     K+   +    +  WNTLIS Y +
Sbjct: 321 KSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVWNTLISVYAQ 380

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
               KE + +F  M K G  PD  S+ S L A G   E+++G  IH  V   R   +   
Sbjct: 381 KGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIK-RPFMDEYV 439

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
           +N+L++MY KCG V+ A ++FD+M  + VVTW SMI+G + NG    A+ LF LM     
Sbjct: 440 FNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCP 499

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
               +   S++ ACS L +L++G+ +H   I   +   + +ETAL+DMYAKC  ++ + +
Sbjct: 500 EIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCIFIETALVDMYAKCGDLQTAQR 559

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           VF   S++  V W+++++    +G   + + LF +ML   ++PND T+ ++L A +    
Sbjct: 560 VFDNMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVMNVLSACSHAGC 619

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           +++ M     +  +G     E    ++D+ S+ G L+ A++I   +P       +W  ++
Sbjct: 620 VKEGMLFFNSMRDFGIEPKREHFVCIVDLLSRAGDLDEAYEIIKLMPFP-PGASIWGALL 678

Query: 490 AGYGMHGHGETAVSLFKEM 508
            G  +H   + A ++ +E+
Sbjct: 679 NGCRIHQRMDIAKNIQREL 697


>gi|147797310|emb|CAN76007.1| hypothetical protein VITISV_013341 [Vitis vinifera]
          Length = 666

 Score =  357 bits (917), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 203/537 (37%), Positives = 306/537 (56%), Gaps = 25/537 (4%)

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSV---VSWNTLISGYFKNAYAKEALVVFDWM 203
           F  N +I+ Y       AAR++FD M E  +   V+W+ +I+GY +N+  K+AL VF  M
Sbjct: 105 FCWNTMISCYFRESHCGAARELFDRMREAHLANDVTWSAVIAGYAQNSRPKDALFVFKEM 164

Query: 204 ------LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA--GGRLGKNIAAWNALVD 255
                 + S + P   ++ SV  ACG L+++ +G  IH  V      +  +    + +VD
Sbjct: 165 RGECDEMGSPLSPMSHTITSVFSACGQLRDVILGEQIHGYVMKISSYVENDAFVGSVVVD 224

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           MY KCG    AR VF  + ++ VV WT++I  Y  N     A+ +F+ M +EG+ PN +T
Sbjct: 225 MYGKCGFEELARFVFYSIVDKCVVVWTALIASYVCNECPCPAIEVFREMIYEGMEPNCVT 284

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLEC--EVIVETALIDMYAKCNLVKLSFQVFAR 373
           + SL+SACS +  L  G+ +H +  ++      +V + T+LIDMY KCN +    ++F  
Sbjct: 285 LSSLISACSQIPDLMLGKEIHGFITRRRAATTPDVFISTSLIDMYGKCNYMVYGHRIF-- 342

Query: 374 TSKKKTVP-------WNAILAGCVHNGLARKAVELFRQML-VEVVEPNDATLNSLLPAYA 425
             K KT P       WNA +AG + N     A ++FR +   E + PN  T++ +LP  A
Sbjct: 343 -EKDKTYPRCNTTALWNATIAGYMENNFVSDAWDVFRSITHGEGINPNTVTMSIVLPLCA 401

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
             + L     IHCY +R G    + VS GLID+YSKCG L+ A   F+ + + +K+ + W
Sbjct: 402 RSSQLLSGKEIHCYALRNGLDQEIFVSNGLIDMYSKCGKLKLAENQFNRM-MNEKNRISW 460

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I G+G+HG GE A+ +F+ MV+  V+P+ +TF + + ACSH GLL++GL  F  M  
Sbjct: 461 TSMIDGHGIHGDGEGAIRVFESMVREEVKPDHITFVALISACSHAGLLEQGLRYFEEMSR 520

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
            +      ++Y  +VDLL RAGR  EA DLI  MP+KP   VWGALLGAC IHGNV+  E
Sbjct: 521 EYGIVPVEENYGTVVDLLARAGRFKEARDLIERMPIKPGANVWGALLGACRIHGNVKEAE 580

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           +AA  L +LEP++ G   LL+ +Y    R ++AE++R  M E G+ K    S +E +
Sbjct: 581 LAAHCLQKLEPKDSGFQKLLASIYLEAGRRENAEDLRSQMREMGMEKRQGFSWLETK 637



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 142/502 (28%), Positives = 245/502 (48%), Gaps = 20/502 (3%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSER---SS 75
           L+  Y+   S    +++   I   GP   +   S      H    R LFD M E    + 
Sbjct: 79  LLTVYSRCGSPQSARKMFDEIPVPGPFCWNTMISCYFRESHCGAARELFDRMREAHLAND 138

Query: 76  FLYNTVMKMYAQNGASHDSLKMFLGML----RLGE-YNPDNYTYPIVIKACTDLAWRKLG 130
             ++ V+  YAQN    D+L +F  M      +G   +P ++T   V  AC  L    LG
Sbjct: 139 VTWSAVIAGYAQNSRPKDALFVFKEMRGECDEMGSPLSPMSHTITSVFSACGQLRDVILG 198

Query: 131 IALHGRVL-ITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
             +HG V+ I+ + + D FVG+ ++ MY   G  + AR VF ++ +  VV W  LI+ Y 
Sbjct: 199 EQIHGYVMKISSYVENDAFVGSVVVDMYGKCGFEELARFVFYSIVDKCVVVWTALIASYV 258

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG--KN 246
            N     A+ VF  M+  G+EP+C ++ S++ AC  + ++ +G+ IH  +   R     +
Sbjct: 259 CNECPCPAIEVFREMIYEGMEPNCVTLSSLISACSQIPDLMLGKEIHGFITRRRAATTPD 318

Query: 247 IAAWNALVDMYVKCGSVNEARLVF--DRMSERDVVT--WTSMINGYALNGDVRNALGLFQ 302
           +    +L+DMY KC  +     +F  D+   R   T  W + I GY  N  V +A  +F+
Sbjct: 319 VFISTSLIDMYGKCNYMVYGHRIFEKDKTYPRCNTTALWNATIAGYMENNFVSDAWDVFR 378

Query: 303 -LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
            +   EG+ PN++T+  +L  C+    L  G+ +H + ++  L+ E+ V   LIDMY+KC
Sbjct: 379 SITHGEGINPNTVTMSIVLPLCARSSQLLSGKEIHCYALRNGLDQEIFVSNGLIDMYSKC 438

Query: 362 NLVKLSFQVFAR-TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
             +KL+   F R  ++K  + W +++ G   +G    A+ +F  M+ E V+P+  T  +L
Sbjct: 439 GKLKLAENQFNRMMNEKNRISWTSMIDGHGIHGDGEGAIRVFESMVREEVKPDHITFVAL 498

Query: 421 LPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           + A +    L+Q +     + R YG + V E    ++D+ ++ G  + A  +   +PIK 
Sbjct: 499 ISACSHAGLLEQGLRYFEEMSREYGIVPVEENYGTVVDLLARAGRFKEARDLIERMPIK- 557

Query: 480 KDIVVWSVIIAGYGMHGHGETA 501
               VW  ++    +HG+ + A
Sbjct: 558 PGANVWGALLGACRIHGNVKEA 579



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 163/374 (43%), Gaps = 61/374 (16%)

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY-LKRGRSLHAWTIKQN-LE 345
           Y+  G  R     +  ++ +G  PNS T  SLL   SS    L   + LHA   K+  + 
Sbjct: 11  YSEQGKWRELTAFYHQIRKQGFEPNSFTFSSLLKCLSSSQSPLLHAQPLHADAAKRGFVS 70

Query: 346 CEVIVETALIDMYAKC----------------------NLVKLSF---------QVFART 374
            +  V   L+ +Y++C                       ++   F         ++F R 
Sbjct: 71  SDPFVTNDLLTVYSRCGSPQSARKMFDEIPVPGPFCWNTMISCYFRESHCGAARELFDRM 130

Query: 375 SK---KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE------PNDATLNSLLPAYA 425
            +      V W+A++AG   N   + A+ +F++M  E  E      P   T+ S+  A  
Sbjct: 131 REAHLANDVTWSAVIAGYAQNSRPKDALFVFKEMRGECDEMGSPLSPMSHTITSVFSACG 190

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVE----VSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            L D+     IH Y+++    S VE    V + ++D+Y KCG  E A  +F    I DK 
Sbjct: 191 QLRDVILGEQIHGYVMKIS--SYVENDAFVGSVVVDMYGKCGFEELARFVF--YSIVDKC 246

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           +VVW+ +IA Y  +     A+ +F+EM+  G++PN VT +S + ACS    L  G ++  
Sbjct: 247 VVVWTALIASYVCNECPCPAIEVFREMIYEGMEPNCVTLSSLISACSQIPDLMLGKEIHG 306

Query: 542 FMLENHQTCSRADHY--TCIVDLLGRAGRL---DEAYDLIRTMPLKPTHAVWGALLGACV 596
           F +   +  +  D +  T ++D+ G+   +      ++  +T P   T A+W A      
Sbjct: 307 F-ITRRRAATTPDVFISTSLIDMYGKCNYMVYGHRIFEKDKTYPRCNTTALWNA-----T 360

Query: 597 IHGNVELGEVAAKW 610
           I G +E   V+  W
Sbjct: 361 IAGYMENNFVSDAW 374



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 77/298 (25%), Positives = 125/298 (41%), Gaps = 48/298 (16%)

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA-DLQQAMNIHCYLI 441
           NA+L      G  R+    + Q+  +  EPN  T +SLL   +     L  A  +H    
Sbjct: 5   NALLILYSEQGKWRELTAFYHQIRKQGFEPNSFTFSSLLKCLSSSQSPLLHAQPLHADAA 64

Query: 442 RYGFLSVVE-VSTGLIDIYSKCGSLESAHKIFSEIPIKDK-------------------- 480
           + GF+S    V+  L+ +YS+CGS +SA K+F EIP+                       
Sbjct: 65  KRGFVSSDPFVTNDLLTVYSRCGSPQSARKMFDEIPVPGPFCWNTMISCYFRESHCGAAR 124

Query: 481 ------------DIVVWSVIIAGYGMHGHGETAVSLFKEM------VQSGVQPNEVTFTS 522
                       + V WS +IAGY  +   + A+ +FKEM      + S + P   T TS
Sbjct: 125 ELFDRMREAHLANDVTWSAVIAGYAQNSRPKDALFVFKEMRGECDEMGSPLSPMSHTITS 184

Query: 523 ALHACSHGGLLDEGLDLFNFMLE-NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581
              AC     +  G  +  ++++ +    + A   + +VD+ G+ G  +E    +    +
Sbjct: 185 VFSACGQLRDVILGEQIHGYVMKISSYVENDAFVGSVVVDMYGKCG-FEELARFVFYSIV 243

Query: 582 KPTHAVWGALLGACVIHG-NVELGEVAAKWLFE-LEPENPGNYVLLSKLYSAVRRWKD 637
                VW AL+ + V +       EV  + ++E +EP    N V LS L SA  +  D
Sbjct: 244 DKCVVVWTALIASYVCNECPCPAIEVFREMIYEGMEP----NCVTLSSLISACSQIPD 297


>gi|242056803|ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
 gi|241929522|gb|EES02667.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
          Length = 762

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 198/592 (33%), Positives = 323/592 (54%), Gaps = 7/592 (1%)

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
            R++  +  +M+M   +G   D++ +F  MLR GE +PD+ T   V+    ++    +G 
Sbjct: 99  RRNAKTWTIMMRMLPADGRGSDAVSLFRDMLREGEASPDDVTITTVL----NVPGCDVG- 153

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            LH  V   GF     V N L+  Y   G + AAR+VF  M     +++N +I G  +  
Sbjct: 154 TLHPVVTKLGFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQG 213

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
              EAL +F  M + GV+    +  S+L     + ++ +GR IH L        N+   N
Sbjct: 214 RHGEALELFAAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVRANPSCNVFVNN 273

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           AL+D Y KC S+ + + +FD MSERD V++  MI+  + N     AL LF+ MQ  G   
Sbjct: 274 ALLDFYSKCDSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMALQLFRDMQTLGFDR 333

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
            +L   SLLS   +L ++K GR +HA  I   L  E  V  ALIDMY+KC ++  +  +F
Sbjct: 334 RTLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDMYSKCGMLDAAKTIF 393

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
           A  S K  + W A++ GCV NG   +A++LF  M    + P+ AT +S++ + + LA + 
Sbjct: 394 AYKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIG 453

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               +H YL + G +  V   + L+D+Y+KCG L+ A + F+E+P  +K+ + W+ +I+ 
Sbjct: 454 IGRQLHAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMP--EKNSITWNAVISA 511

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           Y  +G  + A+ +F  M+  G+ P+ VTF S L AC H GL +E +  F+ M   +    
Sbjct: 512 YAQYGQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYFDLMRYYYSMSP 571

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
             +HY+C++D LGRAG  D+   +I  MP +    +W ++L +C I+GN +L  VAA+ L
Sbjct: 572 WKEHYSCVIDTLGRAGCFDKIQKVIDEMPFEDDPIIWSSILHSCRIYGNQDLATVAAEKL 631

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           F + P +   YV+LS +Y+    W+ A  V+ +M ++G++K   +S +E++ 
Sbjct: 632 FTMVPTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGVKKESGNSWVEIKQ 683



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 139/505 (27%), Positives = 229/505 (45%), Gaps = 48/505 (9%)

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV---------------- 178
            R++  G D  T+     +   ++ G + AARKV D + E S +                
Sbjct: 26  ARMVKAGSDPATYRLELHLNYLVSSGRLAAARKVLDQVPEKSTLYLRFLNRILLGCSRSC 85

Query: 179 ------------------SWNTLISGYFKNAYAKEALVVFDWMLKSG-VEPDCASVVSVL 219
                             +W  ++     +    +A+ +F  ML+ G   PD  ++ +VL
Sbjct: 86  DLSAAKALFSAAARRNAKTWTIMMRMLPADGRGSDAVSLFRDMLREGEASPDDVTITTVL 145

Query: 220 --PACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
             P C      ++G  +H +V     G ++   N L+D Y K G +  AR VF  M  RD
Sbjct: 146 NVPGC------DVG-TLHPVVTKLGFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRD 198

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
            +T+ +MI G +  G    AL LF  M+ EGV  +  T  SLL+  + +  L  GR +H 
Sbjct: 199 SITYNAMIMGCSRQGRHGEALELFAAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHG 258

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
             ++ N  C V V  AL+D Y+KC+ +    Q+F   S++  V +N +++ C  N     
Sbjct: 259 LFVRANPSCNVFVNNALLDFYSKCDSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGM 318

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
           A++LFR M     +       SLL     L  ++    IH  LI +G      V   LID
Sbjct: 319 ALQLFRDMQTLGFDRRTLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALID 378

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
           +YSKCG L++A  IF+     DK  + W+ +I G   +G  E A+ LF +M ++G+ P+ 
Sbjct: 379 MYSKCGMLDAAKTIFAY--KSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDR 436

Query: 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIR 577
            T +S + + S   ++  G  L  ++ ++    S     + ++D+  + G LDEA     
Sbjct: 437 ATCSSIMKSSSSLAVIGIGRQLHAYLTKSGHMPSVFSG-SALLDMYAKCGCLDEAIRTFN 495

Query: 578 TMPLKPTHAVWGALLGACVIHGNVE 602
            MP K +   W A++ A   +G  +
Sbjct: 496 EMPEKNS-ITWNAVISAYAQYGQAK 519


>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
          Length = 1021

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 203/637 (31%), Positives = 343/637 (53%), Gaps = 8/637 (1%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+HA  +  G      + SSL+  Y   G +S+ + +FD  +E++  ++N ++  + QN
Sbjct: 344 RQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQN 403

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
               ++++MF  M R  +   D++T+  V+ AC +L    LG  +H   +  G D D FV
Sbjct: 404 ELQEETIQMFQYMRR-ADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFV 462

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N ++ MY   G +  A+ +F  +     VSWN LI G   N    EA+ +   M   G+
Sbjct: 463 ANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGI 522

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
             D  S  + + AC  +  IE G+ IH       +  N A  ++L+D+Y K G V  +R 
Sbjct: 523 ALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRK 582

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           V   +    +V   ++I G   N     A+ LFQ +  +G +P++ T  S+LS C+    
Sbjct: 583 VLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVS 642

Query: 329 LKRGRSLHAWTIKQN-LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT-VPWNAIL 386
              G+ +H +T+K   L  +  +  +L+ +Y KC L++ + ++       K  V W A +
Sbjct: 643 SVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTATI 702

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           +G   NG + +++ +F +M    V  ++AT  S+L A + +A L     IH  +++ GF+
Sbjct: 703 SGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKACSEMAALTDGKEIHGLIVKSGFV 762

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           S    ++ L+D+YSKCG + S+ +IF E+  + ++I+ W+ +I G+  +G+   A+ LF+
Sbjct: 763 SYETATSALMDMYSKCGDVISSFEIFKELKNR-QNIMPWNSMIVGFAKNGYANEALLLFQ 821

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           +M +S ++P++VT    L ACSH GL+ EGL  F+ M + +    R DHY C++DLLGR 
Sbjct: 822 KMQESQIKPDDVTLLGVLIACSHAGLISEGLHFFDSMSQVYGIVPRVDHYACLIDLLGRG 881

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           G L +A ++I  +P +    +W   L AC +H + E G+VAAK L E+EP++   YV LS
Sbjct: 882 GHLQKAQEVIDQLPFRADGVIWATYLAACQMHKDEERGKVAAKKLVEMEPQSSSTYVFLS 941

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            L++A   W +A+  R+ M EKG+ K P  S I V N
Sbjct: 942 SLHAAAGNWVEAKVAREAMREKGVMKFPGCSWITVGN 978



 Score =  268 bits (685), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 148/546 (27%), Positives = 293/546 (53%), Gaps = 12/546 (2%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           S + + G + + R L   +   S+  +N V+  Y+Q+G   +   ++  M + G   P  
Sbjct: 266 STLASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQG-LMPTR 324

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T+  ++ A  ++     G  +H   +  G D + FVG+ LI +Y+  G +  A+KVFD 
Sbjct: 325 STFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDF 384

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
             E ++V WN ++ G+ +N   +E + +F +M ++ +E D  + VSVL AC  L  +++G
Sbjct: 385 STEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLG 444

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           R +H +     +  ++   NA++DMY K G+++ A+ +F  +  +D V+W ++I G A N
Sbjct: 445 RQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHN 504

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
            +   A+ + + M+F G+  + ++  + ++ACS+++ ++ G+ +H+ +IK N+     V 
Sbjct: 505 EEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAVG 564

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
           ++LID+Y+K   V+ S +V A       VP NA++ G V N    +A+ELF+Q+L +  +
Sbjct: 565 SSLIDLYSKFGDVESSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFK 624

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV-VEVSTGLIDIYSKCGSLESAHK 470
           P++ T  S+L              +HCY ++   L+    +   L+ IY KC  LE A+K
Sbjct: 625 PSNFTFTSILSGCTRPVSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLEDANK 684

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           +  E+P   K++V W+  I+GY  +G+   ++ +F  M    V+ +E TFTS L ACS  
Sbjct: 685 LLEEVP-DHKNLVEWTATISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKACSEM 743

Query: 531 GLLDEGLDLFNFMLE----NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
             L +G ++   +++    +++T + A     ++D+  + G +  ++++ + +  +    
Sbjct: 744 AALTDGKEIHGLIVKSGFVSYETATSA-----LMDMYSKCGDVISSFEIFKELKNRQNIM 798

Query: 587 VWGALL 592
            W +++
Sbjct: 799 PWNSMI 804



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 166/608 (27%), Positives = 289/608 (47%), Gaps = 52/608 (8%)

Query: 35  LHAFIITSG-PLFTHLRSSLVRAYGHVSNVRILFDEMS-----ERSSFLYNTVMKMYAQN 88
           LHA I+  G PL   L  +LV  YG    V   +  ++       SS   ++V+  +A++
Sbjct: 75  LHARILRLGLPLRGRLGDALVDLYGRSGRVGYAWRALACCTGAPASSAAASSVLSCHARS 134

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G+  D L  F  +       PD +   +V+ AC+ L   + G  +H  VL +GF    F 
Sbjct: 135 GSPRDVLDAFQRIRCSIGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFC 194

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
              L+ MY   GEV  AR++FD +     + W ++I+GY +    ++AL +F  M K G 
Sbjct: 195 QAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGS 254

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            PD  + V++               I  L + GRLG                    +AR 
Sbjct: 255 VPDQVTCVTI---------------ISTLASMGRLG--------------------DART 279

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +  R+     V W ++I  Y+ +G      GL++ M+ +G+ P   T  S+LSA +++  
Sbjct: 280 LLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTA 339

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
              GR +HA  +K  L+  V V ++LI++Y K   +  + +VF  +++K  V WNAIL G
Sbjct: 340 FDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYG 399

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            V N L  + +++F+ M    +E +D T  S+L A   L  L     +HC  I+ G  + 
Sbjct: 400 FVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMDAD 459

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           + V+  ++D+YSK G+++ A  +FS IP+KD   V W+ +I G   +     A+++ K M
Sbjct: 460 LFVANAMLDMYSKLGAIDVAKALFSLIPVKDS--VSWNALIVGLAHNEEEGEAINMLKRM 517

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
              G+  +EV+F +A++ACS+   ++ G  + +  ++ +  CS     + ++DL  + G 
Sbjct: 518 KFYGIALDEVSFATAINACSNIWAIETGKQIHSASIK-YNVCSNHAVGSSLIDLYSKFGD 576

Query: 569 LDEAYDL---IRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           ++ +  +   +    + P +A+   L+        +EL +   K  F+     P N+   
Sbjct: 577 VESSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFK-----PSNFTFT 631

Query: 626 SKLYSAVR 633
           S L    R
Sbjct: 632 SILSGCTR 639



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 218/471 (46%), Gaps = 47/471 (9%)

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW--EHSVVSWNTLI 184
           R  G+ LH R+L  G  +   +G+ L+ +Y   G V  A +          S  + ++++
Sbjct: 70  RACGV-LHARILRLGLPLRGRLGDALVDLYGRSGRVGYAWRALACCTGAPASSAAASSVL 128

Query: 185 SGYFKNAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243
           S + ++   ++ L  F  +  S G  PD   +  VL AC  L  +E GR +H  V     
Sbjct: 129 SCHARSGSPRDVLDAFQRIRCSIGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGF 188

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
             ++     LVDMY KCG V++AR +FD ++  D + WTSMI GY   G  + AL LF  
Sbjct: 189 CSSVFCQAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSR 248

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M+  G  P+ +T  +++S  +S+  L   R+L                            
Sbjct: 249 MEKMGSVPDQVTCVTIISTLASMGRLGDARTL---------------------------- 280

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
                    R     TV WNA++A    +GL  +   L++ M  + + P  +T  S+L A
Sbjct: 281 -------LKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSA 333

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
            A +    +   IH   +++G  + V V + LI++Y K G +  A K+F      +K+IV
Sbjct: 334 AANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDF--STEKNIV 391

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
           +W+ I+ G+  +   E  + +F+ M ++ ++ ++ TF S L AC +   LD G  +    
Sbjct: 392 MWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGRQVHCIT 451

Query: 544 LENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           ++N      AD +    ++D+  + G +D A  L   +P+K +   W AL+
Sbjct: 452 IKNGMD---ADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDS-VSWNALI 498


>gi|15227029|ref|NP_178378.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546778|sp|Q1PFA6.2|PP144_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02750
 gi|2947066|gb|AAC05347.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250526|gb|AEC05620.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 206/589 (34%), Positives = 317/589 (53%), Gaps = 41/589 (6%)

Query: 107 YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR 166
           ++P+ +T+P ++K+C  L     G  LH +V+ TGF +D F    L++MYM   +V  A 
Sbjct: 27  HSPNKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDAL 86

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           KV D M E  + S N  +SG  +N + ++A  +F     SG   +  +V SVL  CG   
Sbjct: 87  KVLDEMPERGIASVNAAVSGLLENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGCG--- 143

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
           +IE G  +H L         +    +LV MY +CG    A  +F+++  + VVT+ + I+
Sbjct: 144 DIEGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHKSVVTYNAFIS 203

Query: 287 GYALNGDVRNALGLFQLM-QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           G   NG +     +F LM +F    PN +T  + ++AC+SL  L+ GR LH   +K+  +
Sbjct: 204 GLMENGVMNLVPSVFNLMRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQ 263

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT-VPWNAILAGCVHNGLARKAVELFRQ 404
            E +V TALIDMY+KC   K ++ VF      +  + WN++++G + NG    AVELF +
Sbjct: 264 FETMVGTALIDMYSKCRCWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEK 323

Query: 405 MLVEVVEPNDATLNSLLPAYAILAD----------------------------------- 429
           +  E ++P+ AT NSL+  ++ L                                     
Sbjct: 324 LDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWT 383

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L+    IH ++I+      + V T LID+Y KCG    A +IF     K KD V W+V+I
Sbjct: 384 LKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWARRIFDRFEPKPKDPVFWNVMI 443

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           +GYG HG  E+A+ +F+ + +  V+P+  TFT+ L ACSH G +++G  +F  M E +  
Sbjct: 444 SGYGKHGECESAIEIFELLREEKVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGY 503

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
               +H  C++DLLGR+GRL EA ++I  M    +     +LLG+C  H +  LGE AA 
Sbjct: 504 KPSTEHIGCMIDLLGRSGRLREAKEVIDQMSEPSSSVY-SSLLGSCRQHLDPVLGEEAAM 562

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSL 658
            L ELEPENP  +V+LS +Y+A+ RW+D E++R V+D+K L K P  SL
Sbjct: 563 KLAELEPENPAPFVILSSIYAALERWEDVESIRQVIDQKQLVKLPGLSL 611



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 148/520 (28%), Positives = 248/520 (47%), Gaps = 59/520 (11%)

Query: 2   NGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY- 57
           + P+  T P        L++  A    +   + LHA ++ +G    +FT   ++LV  Y 
Sbjct: 27  HSPNKFTFPP-------LLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTA--TALVSMYM 77

Query: 58  --GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
               V++   + DEM ER     N  +    +NG   D+ +MF G  R+     ++ T  
Sbjct: 78  KVKQVTDALKVLDEMPERGIASVNAAVSGLLENGFCRDAFRMF-GDARVSGSGMNSVTVA 136

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
            V+  C D+   + G+ LH   + +GF+M+ +VG  L++MY   GE   A ++F+ +   
Sbjct: 137 SVLGGCGDI---EGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHK 193

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMI 234
           SVV++N  ISG  +N        VF+ M K S  EP+  + V+ + AC  L  ++ GR +
Sbjct: 194 SVVTYNAFISGLMENGVMNLVPSVFNLMRKFSSEEPNDVTFVNAITACASLLNLQYGRQL 253

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-RDVVTWTSMINGYALNGD 293
           H LV             AL+DMY KC     A +VF  + + R++++W S+I+G  +NG 
Sbjct: 254 HGLVMKKEFQFETMVGTALIDMYSKCRCWKSAYIVFTELKDTRNLISWNSVISGMMINGQ 313

Query: 294 VRNALGLFQLMQFEGVRPNSLT-----------------------------------IGS 318
              A+ LF+ +  EG++P+S T                                   + S
Sbjct: 314 HETAVELFEKLDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTS 373

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           LLSACS ++ LK G+ +H   IK   E ++ V T+LIDMY KC L   + ++F R   K 
Sbjct: 374 LLSACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWARRIFDRFEPKP 433

Query: 379 TVP--WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
             P  WN +++G   +G    A+E+F  +  E VEP+ AT  ++L A +   ++++   I
Sbjct: 434 KDPVFWNVMISGYGKHGECESAIEIFELLREEKVEPSLATFTAVLSACSHCGNVEKGSQI 493

Query: 437 HCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
              +   YG+    E    +ID+  + G L  A ++  ++
Sbjct: 494 FRLMQEEYGYKPSTEHIGCMIDLLGRSGRLREAKEVIDQM 533


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 194/533 (36%), Positives = 293/533 (54%), Gaps = 35/533 (6%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H R+++     ++ +G  L+  Y +  +V +ARKVFD + E +V+  N +I  Y  N +
Sbjct: 61  VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
             E + VF  M    V PD  +   VL AC     I +GR IH       L   +   N 
Sbjct: 121 YGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNG 180

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           LV MY KCG ++EARLV D MS RDVV+W S++ GYA N    +AL + + M+   +  +
Sbjct: 181 LVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHD 240

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           + T+ SLL A S+             T  +N+            MY K         +F 
Sbjct: 241 AGTMASLLPAVSN-------------TTTENV------------MYVK--------DMFF 267

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           +  KK  V WN ++   + N +  +AVEL+ +M  +  EP+  ++ S+LPA    + L  
Sbjct: 268 KMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSL 327

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              IH Y+ R   +  + +   LID+Y+KCG LE A  +F  +  K +D+V W+ +I+ Y
Sbjct: 328 GKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENM--KSRDVVSWTAMISAY 385

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
           G  G G  AV+LF ++  SG+ P+ + F + L ACSH GLL+EG   F  M ++++   R
Sbjct: 386 GFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPR 445

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
            +H  C+VDLLGRAG++ EAY  I+ M ++P   VWGALLGAC +H + ++G +AA  LF
Sbjct: 446 LEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLF 505

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           +L PE  G YVLLS +Y+   RW++  N+R++M  KGL+K P  S +EV  I+
Sbjct: 506 QLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRII 558



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/449 (27%), Positives = 213/449 (47%), Gaps = 43/449 (9%)

Query: 53  LVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNP 109
           L+RAY  + +V   R +FDE+ ER+  + N +++ Y  NG   + +K+F G +      P
Sbjct: 80  LMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVF-GTMCGCNVRP 138

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           D+YT+P V+KAC+      +G  +HG     G     FVGN L++MY   G +  AR V 
Sbjct: 139 DHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVL 198

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           D M    VVSWN+L+ GY +N    +AL V   M    +  D  ++ S+LPA        
Sbjct: 199 DEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVS------ 252

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
                           N    N    MYVK         +F +M ++ +V+W  MI  Y 
Sbjct: 253 ----------------NTTTENV---MYVKD--------MFFKMGKKSLVSWNVMIGVYM 285

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            N     A+ L+  M+ +G  P++++I S+L AC     L  G+ +H +  ++ L   ++
Sbjct: 286 KNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLL 345

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           +E ALIDMYAKC  ++ +  VF     +  V W A+++    +G    AV LF ++    
Sbjct: 346 LENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSG 405

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLI---RYGFLSVVEVSTGLIDIYSKCGSLE 466
           + P+     + L A +    L++  +  C+ +    Y     +E    ++D+  + G ++
Sbjct: 406 LVPDSIAFVTTLAACSHAGLLEEGRS--CFKLMTDHYKITPRLEHLACMVDLLGRAGKVK 463

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
            A++   ++ ++  +  VW  ++    +H
Sbjct: 464 EAYRFIQDMSMEPNE-RVWGALLGACRVH 491


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 194/534 (36%), Positives = 293/534 (54%), Gaps = 35/534 (6%)

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H R+++     ++ +G  L+  Y +  +V +ARKVFD + E +V+  N +I  Y  N 
Sbjct: 60  TVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNG 119

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
           +  E + VF  M    V PD  +   VL AC     I +GR IH       L   +   N
Sbjct: 120 FYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGN 179

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            LV MY KCG ++EARLV D MS RDVV+W S++ GYA N    +AL + + M+   +  
Sbjct: 180 GLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISH 239

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           ++ T+ SLL A S+             T  +N+            MY K         +F
Sbjct: 240 DAGTMASLLPAVSN-------------TTTENV------------MYVK--------DMF 266

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
            +  KK  V WN ++   + N +  +AVEL+ +M  +  EP+  ++ S+LPA    + L 
Sbjct: 267 FKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALS 326

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               IH Y+ R   +  + +   LID+Y+KCG LE A  +F  +  K +D+V W+ +I+ 
Sbjct: 327 LGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENM--KSRDVVSWTAMISA 384

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           YG  G G  AV+LF ++  SG+ P+ + F + L ACSH GLL+EG   F  M ++++   
Sbjct: 385 YGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITP 444

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
           R +H  C+VDLLGRAG++ EAY  I+ M ++P   VWGALLGAC +H + ++G +AA  L
Sbjct: 445 RLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKL 504

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           F+L PE  G YVLLS +Y+   RW++  N+R++M  KGL+K P  S +EV  I+
Sbjct: 505 FQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRII 558



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/492 (26%), Positives = 232/492 (47%), Gaps = 47/492 (9%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---RIL 66
           +T  L+ +++  Y   +++   + +H+ II       + L   L+RAY  + +V   R +
Sbjct: 40  ETVFLLGQVLDTYPDIRTL---RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKV 96

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           FDE+ ER+  + N +++ Y  NG   + +K+F G +      PD+YT+P V+KAC+    
Sbjct: 97  FDEIPERNVIIINVMIRSYVNNGFYGEGVKVF-GTMCGCNVRPDHYTFPCVLKACSCSGT 155

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
             +G  +HG     G     FVGN L++MY   G +  AR V D M    VVSWN+L+ G
Sbjct: 156 IVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVG 215

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
           Y +N    +AL V   M    +  D  ++ S+LPA                        N
Sbjct: 216 YAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVS----------------------N 253

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
               N    MYVK         +F +M ++ +V+W  MI  Y  N     A+ L+  M+ 
Sbjct: 254 TTTENV---MYVK--------DMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEA 302

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
           +G  P++++I S+L AC     L  G+ +H +  ++ L   +++E ALIDMYAKC  ++ 
Sbjct: 303 DGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEK 362

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           +  VF     +  V W A+++    +G    AV LF ++    + P+     + L A + 
Sbjct: 363 ARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSH 422

Query: 427 LADLQQAMNIHCYLI---RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
              L++  +  C+ +    Y     +E    ++D+  + G ++ A++   ++ ++  +  
Sbjct: 423 AGLLEEGRS--CFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNE-R 479

Query: 484 VWSVIIAGYGMH 495
           VW  ++    +H
Sbjct: 480 VWGALLGACRVH 491


>gi|357494773|ref|XP_003617675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519010|gb|AET00634.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 213/652 (32%), Positives = 351/652 (53%), Gaps = 19/652 (2%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG--PLFTHLRSSLVRAYG--- 58
           P+H T P        +   YA    I     LHA     G  P  + + SS V  Y    
Sbjct: 107 PNHFTFPM-------VASSYAHFMMIRSGMNLHALACKVGFFPENSAVGSSFVSLYSRCD 159

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGE--YNPDNYTYPI 116
            +++   +FDE+  R    +  ++  Y QNG S   L+    M R+G+    P+  T   
Sbjct: 160 EMNDAVKVFDEIPVRDVVAWTALVIGYVQNGESEMGLECISEMYRVGDDSQKPNARTLEG 219

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
              AC +L     G  LHG V+  G      + + +++MY   G  + A + F  +    
Sbjct: 220 GFLACGNLGDLVSGRCLHGLVVKNGIGCLLDIQSSVLSMYCKCGVPREAYQSFSEVINKD 279

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           ++SW ++I  Y +     + +  F  ML++ V PD   +  +L   G   ++  G+  H 
Sbjct: 280 LLSWTSMIRVYARFGMMSDCVRFFWEMLENQVCPDGMVIGCILSGFGNSVDVYGGKAFHG 339

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
           L+       +    N+L+ MY K G ++ A  +F R S+  +  W  MI GY   G    
Sbjct: 340 LIIRRHYAPDEMVDNSLLSMYCKFGMLSFAERLFQR-SQGSIEYWNFMIVGYGRIGKNVK 398

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
            + LF+ MQ+ G+R  S+ I S +++C  L  +  GRS+H   IK  ++  + V  +LI+
Sbjct: 399 CIQLFREMQYLGIRSESVGIVSAIASCGQLGEINLGRSIHCNVIKGFVDETISVTNSLIE 458

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY KC+ + +S+++F R S++  + WNA+++  +H     +A+ LF  M++E   PN AT
Sbjct: 459 MYGKCDKMNVSWRIFNR-SERDVILWNALISAHIHVKHYEEAISLFDIMIMEDQNPNTAT 517

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           L  +L A + LA L++   +H Y+   GF   + + T L+D+Y+KCG LE + ++F  + 
Sbjct: 518 LVVVLSACSHLAFLEKGERLHRYINEKGFKLNLPLGTALVDMYAKCGQLEKSREVFDSM- 576

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
             +KD++ W+ +I+GYGM+G+ E+A+ +F  M +S V+PNE+TF S L AC+H GL++EG
Sbjct: 577 -MEKDVICWNAMISGYGMNGYAESAIEIFNLMEESNVKPNEITFLSLLSACAHAGLVEEG 635

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
            ++F  M +++       HYTC+VDLLGR+  L+EA +L+ +MP+ P   VWGALL AC 
Sbjct: 636 KNVFAKM-QSYSVKPNLKHYTCMVDLLGRSCNLEEAEELVLSMPIPPDGGVWGALLSACK 694

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
            H  +E+G    K   + EPEN G Y++++ +YS++ RW +AENVR  M ++
Sbjct: 695 THNQIEMGIRIGKNAIDSEPENDGYYIMVANMYSSIGRWDEAENVRRTMKDR 746



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 158/606 (26%), Positives = 290/606 (47%), Gaps = 24/606 (3%)

Query: 35  LHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
            HA  +T+G    P       SL     H ++   LF  +  + +FL+N+ +K       
Sbjct: 30  FHAVTVTTGNSTNPFIAAKLISLYDTLNHPTSSSTLFHSLPFKDTFLWNSFLKTLFSRSL 89

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG-FDMDTFVG 149
               L  F  ++R     P+++T+P+V  +       + G+ LH      G F  ++ VG
Sbjct: 90  YPQFLS-FYSLMRSENVLPNHFTFPMVASSYAHFMMIRSGMNLHALACKVGFFPENSAVG 148

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG-- 207
           +  +++Y    E+  A KVFD +    VV+W  L+ GY +N  ++  L     M + G  
Sbjct: 149 SSFVSLYSRCDEMNDAVKVFDEIPVRDVVAWTALVIGYVQNGESEMGLECISEMYRVGDD 208

Query: 208 -VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
             +P+  ++     ACG L ++  GR +H LV    +G  +   ++++ MY KCG   EA
Sbjct: 209 SQKPNARTLEGGFLACGNLGDLVSGRCLHGLVVKNGIGCLLDIQSSVLSMYCKCGVPREA 268

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
              F  +  +D+++WTSMI  YA  G + + +  F  M    V P+ + IG +LS   + 
Sbjct: 269 YQSFSEVINKDLLSWTSMIRVYARFGMMSDCVRFFWEMLENQVCPDGMVIGCILSGFGNS 328

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             +  G++ H   I+++   + +V+ +L+ MY K  ++  + ++F R S+     WN ++
Sbjct: 329 VDVYGGKAFHGLIIRRHYAPDEMVDNSLLSMYCKFGMLSFAERLFQR-SQGSIEYWNFMI 387

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
            G    G   K ++LFR+M    +      + S + +   L ++    +IHC +I+ GF+
Sbjct: 388 VGYGRIGKNVKCIQLFREMQYLGIRSESVGIVSAIASCGQLGEINLGRSIHCNVIK-GFV 446

Query: 447 S-VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
              + V+  LI++Y KC  +  + +IF+     ++D+++W+ +I+ +    H E A+SLF
Sbjct: 447 DETISVTNSLIEMYGKCDKMNVSWRIFNR---SERDVILWNALISAHIHVKHYEEAISLF 503

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
             M+     PN  T    L ACSH   L++G  L  ++ E     +     T +VD+  +
Sbjct: 504 DIMIMEDQNPNTATLVVVLSACSHLAFLEKGERLHRYINEKGFKLNLPLG-TALVDMYAK 562

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN---PGNY 622
            G+L+++ ++  +M  K     W A++    ++G  E    +A  +F L  E+   P   
Sbjct: 563 CGQLEKSREVFDSMMEKDV-ICWNAMISGYGMNGYAE----SAIEIFNLMEESNVKPNEI 617

Query: 623 VLLSKL 628
             LS L
Sbjct: 618 TFLSLL 623



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 110/262 (41%), Gaps = 7/262 (2%)

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
           G L+S    +  L+     HA T+         +   LI +Y   N    S  +F     
Sbjct: 12  GELISLSKRITTLQSLLPFHAVTVTTGNSTNPFIAAKLISLYDTLNHPTSSSTLFHSLPF 71

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           K T  WN+ L       L  + +  +  M  E V PN  T   +  +YA    ++  MN+
Sbjct: 72  KDTFLWNSFLKTLFSRSLYPQFLSFYSLMRSENVLPNHFTFPMVASSYAHFMMIRSGMNL 131

Query: 437 HCYLIRYGFLSV-VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           H    + GF      V +  + +YS+C  +  A K+F EIP+  +D+V W+ ++ GY  +
Sbjct: 132 HALACKVGFFPENSAVGSSFVSLYSRCDEMNDAVKVFDEIPV--RDVVAWTALVIGYVQN 189

Query: 496 GHGETAVSLFKEMVQSG---VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
           G  E  +    EM + G    +PN  T      AC + G L  G  L   +++N   C  
Sbjct: 190 GESEMGLECISEMYRVGDDSQKPNARTLEGGFLACGNLGDLVSGRCLHGLVVKNGIGC-L 248

Query: 553 ADHYTCIVDLLGRAGRLDEAYD 574
            D  + ++ +  + G   EAY 
Sbjct: 249 LDIQSSVLSMYCKCGVPREAYQ 270


>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 696

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 225/645 (34%), Positives = 339/645 (52%), Gaps = 27/645 (4%)

Query: 36  HAFIITSGPLFTHLRSSLVRAYGHVS-----NVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           HA ++ SG       + L+ AY   S       R +FDE+  R    +N ++   A +GA
Sbjct: 14  HASLLKSGVAAPTPWNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAASGA 73

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             ++ ++   M   G    + +     +++        +G  L    L +G   + F  +
Sbjct: 74  HPEAWRLLRAMHAQG-LASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAAS 132

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            L+ +Y   G V+ AR+VFD M E + VSWN LI+GY ++     AL +F  M + G+ P
Sbjct: 133 ALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAP 192

Query: 211 DCASVVSVL-----PACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
           D A+  S+L     P+C  + ++  G+++     G  LG  +   NA +  Y +CGS+ +
Sbjct: 193 DEATFASLLTAVEGPSCFLMHQLH-GKIVK---YGSALG--LTVLNAAITAYSQCGSLKD 246

Query: 266 ARLVFDRMSE-RDVVTWTSMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSAC 323
           +R +FD + + RD+++W +M+  Y  NG    A+  F ++MQ  GV P+  +  S++S+C
Sbjct: 247 SRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSC 306

Query: 324 SSLYYLK-RGRSLHAWTIKQNLECEVIVETALIDMYAKCN---LVKLSFQVFARTSKKKT 379
           S   +   +GR +H   IK  LE    V  ALI MY + N   +++ +++ F     K T
Sbjct: 307 SEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLKDT 366

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           V WN++L G   +GL+  A++ FR M  E V  ++   ++ L + + LA LQ    IH  
Sbjct: 367 VSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGL 426

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV-WSVIIAGYGMHGHG 498
           +I  GF S   VS+ LI +YSK G ++ A K F E    DK   V W+ +I GY  HG  
Sbjct: 427 VIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEE---ADKSSSVPWNAMIFGYAQHGQA 483

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
           E    LF EM+Q     + +TF   + +CSH GL+DEG ++ N M   +    R +HY C
Sbjct: 484 ENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHYAC 543

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
            VDL GRAG+LD+A  LI +MP +P   VW  LLGAC IHGNVEL    A  LF  EP  
Sbjct: 544 GVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEPRQ 603

Query: 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
              YVLLS +YS +  W D   V+ VM ++GL K P  S IEV+N
Sbjct: 604 HSTYVLLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSWIEVKN 648


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 222/679 (32%), Positives = 362/679 (53%), Gaps = 35/679 (5%)

Query: 14  HLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH---LRSSLVRAY---GHVSNVRILF 67
           H +I LV   +   ++A  +++H+ I  S   F     L ++L+  Y   G + + +  F
Sbjct: 142 HALIALVNACSCLGNLAAGRRIHSQI--SDRDFEENSVLGNALISMYSKCGSLIDAKQAF 199

Query: 68  DEM---SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           D +   S+R    +N ++  + +NG++ ++L++F  M R G   P++ T+  V+ +C + 
Sbjct: 200 DRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEA 259

Query: 125 AWRKLG--IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF----DAMWEHSVV 178
               L    A+HGR++  G + + FV   L+  Y   G +  A +VF    D     S+V
Sbjct: 260 GLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLV 319

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI---- 234
           + + +IS  ++N + +E+L +F  M   G +P   ++VSVL AC  L+       +    
Sbjct: 320 TCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNACSMLQVGSATAFVLEQA 379

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
            E+V+  R   N+     L+  Y +   +  AR  FD +   DVV+W +M   Y  +   
Sbjct: 380 MEVVSATR--DNVLG-TTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRS 436

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKR-----GRSLHAWTIKQNLECEVI 349
           R AL LF+ M  EGVRP+  T  + L+AC++  Y  +     G+ + +   +  LE +  
Sbjct: 437 REALVLFERMLLEGVRPSVATFITALTACAA--YPPQTASAIGKRIQSLLEEAGLEGDTA 494

Query: 350 VETALIDMYAKCNLVKLSFQVFARTS--KKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           V  A ++MYAKC  +  +  VF R S  ++  + WN++LA   H+GL ++A ELF+ M  
Sbjct: 495 VANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEA 554

Query: 408 E-VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
           E +V+PN  T  ++L A      + Q   IH  ++  GF S   +   L+++Y+KCGSL+
Sbjct: 555 EKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLD 614

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
            A  IF +     +D++ W+ +IAGY  +G  E A+ LF  M Q GV+PN VTF SAL A
Sbjct: 615 DAQAIFDKSSSNQEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTA 674

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           C+HGG L++G +L + M  +H     + H++CIVDLLGR GRLDEA  L+     +    
Sbjct: 675 CNHGGKLEQGCELLSGMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTS-QADVI 733

Query: 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646
            W ALL AC     +E GE  A+ + +L+PE   +Y++L+ +Y+A  RW +A  +R  M 
Sbjct: 734 TWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTML 793

Query: 647 EKGLRKAPAHSLIEVRNIL 665
           +KG+R  P  S +EV   L
Sbjct: 794 DKGIRADPGCSAVEVNQEL 812



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 179/645 (27%), Positives = 309/645 (47%), Gaps = 68/645 (10%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTH--LRSSLVRAYGHVSNVRILFDEMSERSS 75
           L+Q     +++   ++LHA I++    L  H  L S L+  +    N+    + +++R +
Sbjct: 49  LLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNL-AEAEALADRFA 107

Query: 76  FLYN--TVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
            +Y+   +++ + ++G    ++++F  M    E  P+ +    ++ AC+ L     G  +
Sbjct: 108 SVYSCTAMIRAWMEHGRPDKAMELFDRM----EVRPNCHALIALVNACSCLGNLAAGRRI 163

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS---VVSWNTLISGYFKN 190
           H ++    F+ ++ +GN LI+MY   G +  A++ FD +   S   VV+WN +IS + +N
Sbjct: 164 HSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRN 223

Query: 191 AYAKEALVVFDWMLKSGV-EPDCASVVSVLPAC--GYLKEIEMGRMIHELVAGGRLGKNI 247
             A+EAL +F  M + G   P+  + VSVL +C    L  +E  R IH  + G  + +  
Sbjct: 224 GSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREA 283

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERD----VVTWTSMINGYALNGDVRNALGLFQL 303
               ALVD Y K GS+++A  VF R  + +    +VT ++MI+    NG  + +L LF  
Sbjct: 284 FVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFA 343

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC-----EVIVETALIDMY 358
           M  EG +P+ +T+ S+L+ACS L       S  A+ ++Q +E      + ++ T L+  Y
Sbjct: 344 MNLEGTKPSGVTLVSVLNACSMLQV----GSATAFVLEQAMEVVSATRDNVLGTTLLTTY 399

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
           A+ N +  +   F        V WNA+ A  + +  +R+A+ LF +ML+E V P+ AT  
Sbjct: 400 ARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATFI 459

Query: 419 SLLPAYAILADLQQAM---NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           + L A A       +     I   L   G      V+   +++Y+KCGSL  A  +F  I
Sbjct: 460 TALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERI 519

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM-VQSGVQPNEVTFTSALHACS------ 528
               +D + W+ ++A YG HG G+ A  LF+ M  +  V+PN+VTF + L A +      
Sbjct: 520 SPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIA 579

Query: 529 -----HGGLLDEGLD----LFNFMLENHQTCSRADHYTCIVD---------------LLG 564
                H  ++  G +    + N +L  +  C   D    I D               + G
Sbjct: 580 QGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLIAG 639

Query: 565 RA--GRLDEAYDLIRTMP---LKPTHAVWGALLGACVIHGNVELG 604
            A  G+ + A  L  TM    ++P H  + + L AC   G +E G
Sbjct: 640 YAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQG 684



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/435 (31%), Positives = 225/435 (51%), Gaps = 32/435 (7%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMD--TFVGNCLIAMYMNFGEVKAARKVFD 170
           TY  +++AC  L   K G  LH  +L    D+   +F+ + LI M+   G +  A  + D
Sbjct: 45  TYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALAD 104

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
                SV S   +I  + ++    +A+ +FD M    V P+C ++++++ AC  L  +  
Sbjct: 105 RF--ASVYSCTAMIRAWMEHGRPDKAMELFDRM---EVRPNCHALIALVNACSCLGNLAA 159

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM---SERDVVTWTSMING 287
           GR IH  ++     +N    NAL+ MY KCGS+ +A+  FDR+   S+RDVVTW +MI+ 
Sbjct: 160 GRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISA 219

Query: 288 YALNGDVRNALGLFQLMQFEGV-RPNSLTIGSLLSAC--SSLYYLKRGRSLHAWTIKQNL 344
           +  NG  R AL LF+ M  +G   PNS+T  S+L +C  + L  L+  R++H   +   +
Sbjct: 220 FLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGI 279

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT----VPWNAILAGCVHNGLARKAVE 400
           E E  V TAL+D Y K   +  +++VF R   ++     V  +A+++ C  NG  ++++ 
Sbjct: 280 EREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLR 339

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILA-------DLQQAMNIHCYLIRYGFLSVVEVST 453
           LF  M +E  +P+  TL S+L A ++L         L+QAM +     R   L      T
Sbjct: 340 LFFAMNLEGTKPSGVTLVSVLNACSMLQVGSATAFVLEQAMEV-VSATRDNVL-----GT 393

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            L+  Y++   L  A   F    I+  D+V W+ + A Y  H     A+ LF+ M+  GV
Sbjct: 394 TLLTTYARSNDLPRARATFD--AIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGV 451

Query: 514 QPNEVTFTSALHACS 528
           +P+  TF +AL AC+
Sbjct: 452 RPSVATFITALTACA 466


>gi|116830405|gb|ABK28160.1| unknown [Arabidopsis thaliana]
          Length = 614

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 206/589 (34%), Positives = 317/589 (53%), Gaps = 41/589 (6%)

Query: 107 YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR 166
           ++P+ +T+P ++K+C  L     G  LH +V+ TGF +D F    L++MYM   +V  A 
Sbjct: 27  HSPNKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDAL 86

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           KV D M E  + S N  +SG  +N + ++A  +F     SG   +  +V SVL  CG   
Sbjct: 87  KVLDEMPERGIASVNAAVSGLLENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGCG--- 143

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
           +IE G  +H L         +    +LV MY +CG    A  +F+++  + VVT+ + I+
Sbjct: 144 DIEGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHKSVVTYNAFIS 203

Query: 287 GYALNGDVRNALGLFQLM-QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           G   NG +     +F LM +F    PN +T  + ++AC+SL  L+ GR LH   +K+  +
Sbjct: 204 GLMENGVMNLVPSVFNLMRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQ 263

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT-VPWNAILAGCVHNGLARKAVELFRQ 404
            E +V TALIDMY+KC   K ++ VF      +  + WN++++G + NG    AVELF +
Sbjct: 264 FETMVGTALIDMYSKCRCWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEK 323

Query: 405 MLVEVVEPNDATLNSLLPAYAILAD----------------------------------- 429
           +  E ++P+ AT NSL+  ++ L                                     
Sbjct: 324 LDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWT 383

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L+    IH ++I+      + V T LID+Y KCG    A +IF     K KD V W+V+I
Sbjct: 384 LKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWARRIFDRFEPKPKDPVFWNVMI 443

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           +GYG HG  E+A+ +F+ + +  V+P+  TFT+ L ACSH G +++G  +F  M E +  
Sbjct: 444 SGYGKHGECESAIEIFELLREEKVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGY 503

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
               +H  C++DLLGR+GRL EA ++I  M    +     +LLG+C  H +  LGE AA 
Sbjct: 504 KPSTEHIGCMIDLLGRSGRLREAKEVIDQMSEPSSSVY-SSLLGSCRQHLDPVLGEEAAM 562

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSL 658
            L ELEPENP  +V+LS +Y+A+ RW+D E++R V+D+K L K P  SL
Sbjct: 563 KLAELEPENPAPFVILSSIYAALERWEDVESIRQVIDQKQLVKLPGLSL 611



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 148/518 (28%), Positives = 247/518 (47%), Gaps = 59/518 (11%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY--- 57
           P+  T P        L++  A    +   + LHA ++ +G    +FT   ++LV  Y   
Sbjct: 29  PNKFTFPP-------LLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTA--TALVSMYMKV 79

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
             V++   + DEM ER     N  +    +NG   D+ +MF G  R+     ++ T   V
Sbjct: 80  KQVTDALKVLDEMPERGIASVNAAVSGLLENGFCRDAFRMF-GDARVSGSGMNSVTVASV 138

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +  C D+   + G+ LH   + +GF+M+ +VG  L++MY   GE   A ++F+ +   SV
Sbjct: 139 LGGCGDI---EGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHKSV 195

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V++N  ISG  +N        VF+ M K S  EP+  + V+ + AC  L  ++ GR +H 
Sbjct: 196 VTYNAFISGLMENGVMNLVPSVFNLMRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHG 255

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-RDVVTWTSMINGYALNGDVR 295
           LV             AL+DMY KC     A +VF  + + R++++W S+I+G  +NG   
Sbjct: 256 LVMKKEFQFETMVGTALIDMYSKCRCWKSAYIVFTELKDTRNLISWNSVISGMMINGQHE 315

Query: 296 NALGLFQLMQFEGVRPNSLT-----------------------------------IGSLL 320
            A+ LF+ +  EG++P+S T                                   + SLL
Sbjct: 316 TAVELFEKLDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTSLL 375

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           SACS ++ LK G+ +H   IK   E ++ V T+LIDMY KC L   + ++F R   K   
Sbjct: 376 SACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWARRIFDRFEPKPKD 435

Query: 381 P--WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
           P  WN +++G   +G    A+E+F  +  E VEP+ AT  ++L A +   ++++   I  
Sbjct: 436 PVFWNVMISGYGKHGECESAIEIFELLREEKVEPSLATFTAVLSACSHCGNVEKGSQIFR 495

Query: 439 YLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
            +   YG+    E    +ID+  + G L  A ++  ++
Sbjct: 496 LMQEEYGYKPSTEHIGCMIDLLGRSGRLREAKEVIDQM 533


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 188/563 (33%), Positives = 315/563 (55%), Gaps = 37/563 (6%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           LH R+++     + ++ + L+A+Y     +  AR VFD +   +  S+N ++  Y  +  
Sbjct: 46  LHARLILFSVTPENYLASKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLHNR 105

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACG--YLKEIEMGRMIHELVAGGRLGKNIAAW 250
             +AL +F  +  S +  +  S+  +L +     L ++++G+ +H  V       ++   
Sbjct: 106 HGDALDLFSSLASSNLVNNI-SITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFDADVFVE 164

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQFEGV 309
           NAL+  Y KC  ++ +R VFDRM++RDVV+W SMI+GY+  G   +   L+ +++ F G 
Sbjct: 165 NALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSGF 224

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
           RPN +T+ S+L AC     L  G  +H + +   +E ++ V  ALI +YAKC  +  + +
Sbjct: 225 RPNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARE 284

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV------------------- 410
           +F   S+K  V + AI++G + +G   +++ELFR M  +++                   
Sbjct: 285 LFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGV 344

Query: 411 ------------EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
                        PN  TL+S+L   A  + L+    IH Y I+ G+   + V+T +ID+
Sbjct: 345 LDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDM 404

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           Y+K G L  A ++F +   KD+ +V+W+ II+ Y +HG    A+ LF EM++ G+QP+ V
Sbjct: 405 YAKSGYLRGAQRVFDQS--KDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPV 462

Query: 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578
           TFT+ L AC+H G++D+  ++F  M + +      +HY C+V  LG+A RL EA + +  
Sbjct: 463 TFTAVLAACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSK 522

Query: 579 MPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDA 638
           MP++P+  VWGALL    I  +VELG+    +LFE+EPEN GNYV+++ LYS   RWK+A
Sbjct: 523 MPIEPSAKVWGALLHGASISSDVELGKSVCDYLFEIEPENTGNYVIMANLYSQAGRWKEA 582

Query: 639 ENVRDVMDEKGLRKAPAHSLIEV 661
           + VR+ M++ GL+K P  S IE 
Sbjct: 583 DEVRERMNKVGLQKIPGSSWIET 605



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 157/496 (31%), Positives = 259/496 (52%), Gaps = 38/496 (7%)

Query: 33  KQLHA-FIITSGPLFTHLRSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           KQLHA  I+ S     +L S LV  Y    H++  R +FD++  +++F YN ++  Y+ +
Sbjct: 44  KQLHARLILFSVTPENYLASKLVALYSKTNHLAFARYVFDQIPHKNTFSYNAMLISYSLH 103

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
               D+L +F  +      N  + T  +   +   L+  KLG  +HG VL TGFD D FV
Sbjct: 104 NRHGDALDLFSSLASSNLVNNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFDADVFV 163

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK-SG 207
            N LI  Y    ++  +RKVFD M +  VVSWN++ISGY +    ++   ++  M+  SG
Sbjct: 164 ENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREMVDFSG 223

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
             P+  +VVSVL ACG  +++  G  +H+ +   ++  +I+  NAL+ +Y KCGS++ AR
Sbjct: 224 FRPNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYAR 283

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE-------------------- 307
            +FD MSE+D VT+ ++I+G  L+G V  +L LF+ M+ +                    
Sbjct: 284 ELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEG 343

Query: 308 -----------GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
                      G RPN++T+ S+LS  +    LK G+ +H++ IK      + V TA+ID
Sbjct: 344 VLDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIID 403

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MYAK   ++ + +VF ++  +  V W AI++    +G A  A+ LF +ML + ++P+  T
Sbjct: 404 MYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVT 463

Query: 417 LNSLLPAYAILADLQQAMNI-HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
             ++L A A    + +A  I      +YG   +VE    ++    K   L  A +  S++
Sbjct: 464 FTAVLAACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKM 523

Query: 476 PIKDKDIVVWSVIIAG 491
           PI +    VW  ++ G
Sbjct: 524 PI-EPSAKVWGALLHG 538



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/291 (28%), Positives = 146/291 (50%), Gaps = 12/291 (4%)

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
           G LL   + L    + + LHA  I  ++  E  + + L+ +Y+K N +  +  VF +   
Sbjct: 28  GHLLHHLTELRLPLQAKQLHARLILFSVTPENYLASKLVALYSKTNHLAFARYVFDQIPH 87

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA--ILADLQQAM 434
           K T  +NA+L     +     A++LF  +    +  N+ ++  LL + +   L+D++   
Sbjct: 88  KNTFSYNAMLISYSLHNRHGDALDLFSSLASSNL-VNNISITCLLKSLSSFTLSDVKLGK 146

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            +H +++R GF + V V   LI  YSKC  L+ + K+F  +    +D+V W+ +I+GY  
Sbjct: 147 EVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMT--KRDVVSWNSMISGYSQ 204

Query: 495 HGHGETAVSLFKEMVQ-SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
            G  E   +L++EMV  SG +PN VT  S L AC     L  G+++  F+++N       
Sbjct: 205 GGLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAFGMEVHKFIVDNQ---VEI 261

Query: 554 DHYTC--IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           D   C  ++ L  + G LD A +L   M  K     +GA++   ++HG V+
Sbjct: 262 DISVCNALIGLYAKCGSLDYARELFDEMSEKD-EVTYGAIISGLMLHGYVD 311



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 138/316 (43%), Gaps = 36/316 (11%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMS 71
           V+ ++Q    T+ +A   ++H FI+ +   +   + ++L+  Y   G +   R LFDEMS
Sbjct: 231 VVSVLQACGQTQDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYARELFDEMS 290

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGM------------------------------ 101
           E+    Y  ++     +G    SL++F GM                              
Sbjct: 291 EKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWNAVITGLVQNNRHEGVLDLVRE 350

Query: 102 LRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGE 161
           ++   + P+  T   V+      +  K G  +H   +  G+  + +V   +I MY   G 
Sbjct: 351 MQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGY 410

Query: 162 VKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPA 221
           ++ A++VFD   + S+V W  +IS Y  +  A  AL +F  MLK G++PD  +  +VL A
Sbjct: 411 LRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEMLKQGIQPDPVTFTAVLAA 470

Query: 222 CGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVV 279
           C +   ++    I E +     +   +  +  +V    K   ++EA+    +M  E    
Sbjct: 471 CAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGKARRLSEAKEFVSKMPIEPSAK 530

Query: 280 TWTSMINGYALNGDVR 295
            W ++++G +++ DV 
Sbjct: 531 VWGALLHGASISSDVE 546


>gi|297802780|ref|XP_002869274.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315110|gb|EFH45533.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 686

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 203/637 (31%), Positives = 344/637 (54%), Gaps = 23/637 (3%)

Query: 34  QLHAFIITSGPLFTHLRS------SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           Q+H F  T G  FT           + R  G   N   +F+ + +     +NT++  +  
Sbjct: 22  QIHGFSTTCG--FTSFVCVSNAVMGMYRKAGRFDNALYIFENLVDPDVVSWNTILSGFDD 79

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           N  + +    F+  ++      D +TY   +  C      +LG+ L   V+ +G + D  
Sbjct: 80  NQIALN----FVVRMKSAGVVFDAFTYSTALSFCVGSEGFRLGLQLQSTVVKSGLESDLV 135

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA-YAKEALVVFDWMLKS 206
           VGN  I MY   G  + AR+VFD M    ++SWN+L+SG  +   +  EA+++F  M++ 
Sbjct: 136 VGNSFITMYSRSGSFRGARRVFDEMPFKDMISWNSLLSGLSQEGTFGFEAVLIFRDMMRE 195

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           GVE D  S  SV+  C +  ++++ R IH L         +   N L+  Y KCG +   
Sbjct: 196 GVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESLLEVGNILMSRYSKCGVLEAV 255

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
           + VF +MSER+VV+WT+MI+    N D  +A+ +F  M+ +GV PN +T   LL+A    
Sbjct: 256 KSVFYQMSERNVVSWTTMISS---NRD--DAVSIFLNMRLDGVYPNEVTFVGLLNAVKCN 310

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             +K G  +H   IK     E  V  + I MYAK   ++ + + F   + ++ + WNA++
Sbjct: 311 EQIKEGLKIHGLCIKTGFVSEPSVGNSFITMYAKFEALEDAKKAFDDITFREIISWNAMI 370

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL--QQAMNIHCYLIRYG 444
           +G   NG + +A+++F     E + PN+ T  S+L A A   D+  +     H +L++ G
Sbjct: 371 SGFAQNGFSHEALKMFLSATAETM-PNEYTFGSVLNAIAFAEDISVKHGQRCHAHLLKLG 429

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
             S   VS+ L+D+Y+K G++  + K+F+E+  +++   VW+ II+ Y  HG   + ++L
Sbjct: 430 LNSCPVVSSALLDMYAKRGNINESEKVFNEMSQRNQ--FVWTSIISAYSSHGDFNSVMNL 487

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           F EM++  V P+ VTF S L AC+  G++D+G ++ N M+E++      +HY+C+VD+LG
Sbjct: 488 FHEMIKENVAPDLVTFLSVLTACNRKGMVDKGHEILNMMIEDYNLEPSHEHYSCMVDMLG 547

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
           RAGRL EA +L+  +P  P  ++  ++LG+C +HGNV++G   A+   E++PE  G+YV 
Sbjct: 548 RAGRLKEAEELMSEVPGGPGESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQ 607

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +  +Y+   +W  A  +R  M +K + K    S I+V
Sbjct: 608 MYNIYAEKEQWDKAAEIRKAMRKKNVSKEAGFSWIDV 644



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 138/506 (27%), Positives = 237/506 (46%), Gaps = 42/506 (8%)

Query: 110 DNYTYPIVIKACT-DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           D  T  + +KAC  DL   K G  +HG     GF     V N ++ MY   G    A  +
Sbjct: 2   DEVTLCLALKACRGDL---KRGCQIHGFSTTCGFTSFVCVSNAVMGMYRKAGRFDNALYI 58

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           F+ + +  VVSWNT++SG+  N  A   +V    M  +GV  D  +  + L  C   +  
Sbjct: 59  FENLVDPDVVSWNTILSGFDDNQIALNFVV---RMKSAGVVFDAFTYSTALSFCVGSEGF 115

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
            +G  +   V    L  ++   N+ + MY + GS   AR VFD M  +D+++W S+++G 
Sbjct: 116 RLGLQLQSTVVKSGLESDLVVGNSFITMYSRSGSFRGARRVFDEMPFKDMISWNSLLSGL 175

Query: 289 ALNGDVR-NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           +  G     A+ +F+ M  EGV  + ++  S+++ C     LK  R +H   IK+  E  
Sbjct: 176 SQEGTFGFEAVLIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYESL 235

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           + V   L+  Y+KC +++    VF + S++  V W  +++    +     AV +F  M +
Sbjct: 236 LEVGNILMSRYSKCGVLEAVKSVFYQMSERNVVSWTTMISSNRDD-----AVSIFLNMRL 290

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           + V PN+ T   LL A      +++ + IH   I+ GF+S   V    I +Y+K  +LE 
Sbjct: 291 DGVYPNEVTFVGLLNAVKCNEQIKEGLKIHGLCIKTGFVSEPSVGNSFITMYAKFEALED 350

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A K F +I    ++I+ W+ +I+G+  +G    A+ +F     +   PNE TF S L+A 
Sbjct: 351 AKKAFDDITF--REIISWNAMISGFAQNGFSHEALKMFLS-ATAETMPNEYTFGSVLNAI 407

Query: 528 S-------------HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYD 574
           +             H  LL  GL+          +C      + ++D+  + G ++E+  
Sbjct: 408 AFAEDISVKHGQRCHAHLLKLGLN----------SCPVVS--SALLDMYAKRGNINESEK 455

Query: 575 LIRTMPLKPTHAVWGALLGACVIHGN 600
           +   M  +    VW +++ A   HG+
Sbjct: 456 VFNEMSQR-NQFVWTSIISAYSSHGD 480


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 205/610 (33%), Positives = 319/610 (52%), Gaps = 3/610 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +++ R LFD M ER+   + T+++ +AQ G    +  +F   LR   +  + +    +
Sbjct: 110 GPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFR-RLRWEGHEVNQFVLTTM 168

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +K    +    L   +H      G D + FVG+ LI  Y     V  A  VF+ +     
Sbjct: 169 LKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDA 228

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V W  ++S Y +N   + A  VF  M  SG +P+  ++ SVL A   L  + +G+ IH  
Sbjct: 229 VVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGC 288

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                         AL+DMY KCG + +ARL F+ +   DV+  + MI+ YA +     A
Sbjct: 289 AIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQA 348

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
             LF  +    V PN  ++ S+L AC+++  L  G+ +H   IK   E ++ V  AL+D 
Sbjct: 349 FELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDF 408

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAKCN +  S ++F+       V WN I+ G   +GL  +A+ +F +M    +     T 
Sbjct: 409 YAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTY 468

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +S+L A A  A ++ A  IHC + +  F +   +   LID Y+KCG +  A K+F  +  
Sbjct: 469 SSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHL-- 526

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            ++DI+ W+ II+GY +HG    A+ LF  M +S V+ N++TF + L  CS  GL++ GL
Sbjct: 527 MERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGL 586

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
            LF+ M  +H      +HYTCIV LLGRAGRL++A   I  +P  P+  VW ALL +C+I
Sbjct: 587 SLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCII 646

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           H NV LG  +A+ + E+EP++   YVLLS +Y+A         +R  M   G+RK P  S
Sbjct: 647 HKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLS 706

Query: 658 LIEVRNILTA 667
            +E++  + A
Sbjct: 707 WVEIKGEIHA 716


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 195/610 (31%), Positives = 323/610 (52%), Gaps = 2/610 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +   R +FD+M+ R    + T++  Y     S+++L +F  M        D +   + 
Sbjct: 71  GQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVHPGPQRDQFMISVA 130

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +KAC        G  LHG  + +G     FV + LI MYM  G+++   +VF+ M   +V
Sbjct: 131 LKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNV 190

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSW  +I+G     Y  E L+ F  M +S V  D  +    L A      +  G+ IH  
Sbjct: 191 VSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLHHGKAIHTQ 250

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                  ++    N L  MY KCG  +    +F++M   DVV+WT++I+ Y   G+  +A
Sbjct: 251 TIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHA 310

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           +  F+ M+   V PN  T  +++S+C++L   K G  +H   ++  L   + V  ++I +
Sbjct: 311 VEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITL 370

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y+KC L+K +  VF   ++K  + W+ I++     G A++A +    M  E  +PN+  L
Sbjct: 371 YSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFAL 430

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +S+L     +A L+Q   +H +L+  G      V + +I +YSKCGS++ A KIF+ + I
Sbjct: 431 SSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKI 490

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            D  I+ W+ +I GY  HG+ + A++LF+++   G++P+ V F   L AC+H G++D G 
Sbjct: 491 ND--IISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGF 548

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             F  M   ++     +HY C++DLL RAGRL EA  +IR+MP      VW  LL AC +
Sbjct: 549 YYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACRV 608

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           HG+V+ G   A+ L +L+P + G ++ L+ +Y+A  RWK+A ++R +M  KG+ K    S
Sbjct: 609 HGDVDRGRWTAEQLLQLDPNSAGTHITLANIYAAKGRWKEAAHIRKLMKSKGVIKERGWS 668

Query: 658 LIEVRNILTA 667
            + V + L A
Sbjct: 669 WVNVNDQLNA 678



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 141/527 (26%), Positives = 254/527 (48%), Gaps = 32/527 (6%)

Query: 7   HTLPKTTHLVIKLVQQYAATK-SIAGTKQLHAFIITSGPLFT-HLRSSLVRAYGHVSNVR 64
           H  P+    +I +  +  A   +I   + LH F + SG + +  + S+L+  Y  V  + 
Sbjct: 117 HPGPQRDQFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIE 176

Query: 65  I---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC 121
               +F++M  R+   +  ++      G + + L  F  M R  +   D++T+ I +KA 
Sbjct: 177 QGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWR-SKVGYDSHTFAIALKAS 235

Query: 122 TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWN 181
            D +    G A+H + +  GFD  +FV N L  MY   G+     ++F+ M    VVSW 
Sbjct: 236 ADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRMPDVVSWT 295

Query: 182 TLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG 241
           TLIS Y +    + A+  F  M KS V P+  +  +V+ +C  L   + G  IH  V   
Sbjct: 296 TLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRL 355

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
            L   ++  N+++ +Y KCG +  A LVF  ++ +D+++W+++I+ Y+  G  + A    
Sbjct: 356 GLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFDYL 415

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
             M+ EG +PN   + S+LS C S+  L++G+ +HA  +   ++ E +V +A+I MY+KC
Sbjct: 416 SWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKC 475

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
             V+ + ++F        + W A++ G   +G +++A+ LF ++          +   L 
Sbjct: 476 GSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEAINLFEKI----------SSVGLK 525

Query: 422 PAYAILADLQQAMNIHCYLIRYGFL------SVVEVSTG------LIDIYSKCGSLESAH 469
           P Y +   +  A N H  ++  GF       +V  +S        LID+  + G L  A 
Sbjct: 526 PDYVMFIGVLTACN-HAGMVDLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAE 584

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
            I   +P    D VVWS ++    +HG  +      ++++Q  + PN
Sbjct: 585 HIIRSMPFHTDD-VVWSTLLRACRVHGDVDRGRWTAEQLLQ--LDPN 628



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 111/384 (28%), Positives = 176/384 (45%), Gaps = 36/384 (9%)

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           N+   N+ +   VK G + +AR +FD+M+ RD ++WT++I GY    D   AL LF  M 
Sbjct: 56  NMLELNSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMW 115

Query: 306 FE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
              G + +   I   L AC+    +  G  LH +++K  L   V V +ALIDMY K   +
Sbjct: 116 VHPGPQRDQFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKI 175

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
           +   +VF +   +  V W AI+AG VH G   + +  F +M    V  +  T    L A 
Sbjct: 176 EQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKAS 235

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           A  + L     IH   I+ GF     V   L  +Y+KCG  +   ++F ++ +   D+V 
Sbjct: 236 ADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMRM--PDVVS 293

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGGLL 533
           W+ +I+ Y   G  E AV  FK M +S V PN+ TF + + +C+           HG +L
Sbjct: 294 WTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCANLAAAKWGEQIHGHVL 353

Query: 534 DEG----LDLFNFMLENHQTC-------------SRAD--HYTCIVDLLGRAGRLDEAYD 574
             G    L + N ++  +  C             +R D   ++ I+ +  + G   EA+D
Sbjct: 354 RLGLVNALSVANSIITLYSKCGLLKSASLVFHGITRKDIISWSTIISVYSQGGYAKEAFD 413

Query: 575 LI---RTMPLKPTHAVWGALLGAC 595
            +   R    KP      ++L  C
Sbjct: 414 YLSWMRREGPKPNEFALSSVLSVC 437


>gi|20160775|dbj|BAB89716.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125573261|gb|EAZ14776.1| hypothetical protein OsJ_04704 [Oryza sativa Japonica Group]
          Length = 916

 Score =  357 bits (915), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 197/598 (32%), Positives = 330/598 (55%), Gaps = 10/598 (1%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F   S ++   +N ++K   +N   ++++ MF  M    +  PD  T   +I AC D  
Sbjct: 324 VFLSTSNKNLVTWNAMIKGLVENDRVNEAMCMFQEMR--SKNQPDVATLVTIISACGDHG 381

Query: 126 WRKLGIALHGRVLITG-FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
               G  +HG ++  G    +  VGN L+ +YM   +   AR +F  M    ++SWNT+I
Sbjct: 382 LLPEGKEVHGYIIKKGHIYEECSVGNSLLDLYMKCNDPSTARILFRTMPMRDLISWNTMI 441

Query: 185 SGYFKN-AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243
           SGY +N +  +EA  +F  +L  G+    ++VV+V+P+C   +++  G+ +H  +     
Sbjct: 442 SGYSRNDSLGEEAKAMFKGLLSEGLSCTLSTVVAVIPSCFCPQDLNFGKSVHSFILKYGF 501

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-RDVVTWTSMINGYALNGDVRNALGLFQ 302
              ++A N+L+ MY+ CG    A  + + ++   D+++W + I G   NG   +AL  FQ
Sbjct: 502 LTGVSAANSLIHMYICCGDSLAAFSLLESITPISDIISWNTAIVGCVQNGLYGDALEAFQ 561

Query: 303 LMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
            M     + P+S+T+ S+LS C +L     G+S+H   +K+ +E  + V+ AL+ MY + 
Sbjct: 562 FMHSTLTLNPDSITLVSVLSVCGNLKLQSLGKSIHCMALKRLIEFNLRVKNALLTMYFRF 621

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
              + +  +F+    +    WN +++G   N    +A + +++M  E  EPN+ ++  ++
Sbjct: 622 GDTESAELIFSSLVGRNLCSWNCMISGFAQNNEGLRAFQFYKKM--EDFEPNEISIVGII 679

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            A   L DL+Q  NIH +++R+G  + V +S  L+D+YSKCG L+ + ++F      +K 
Sbjct: 680 CACTQLGDLRQGKNIHGHVVRFGLQTNVFISASLVDMYSKCGRLDISIRVFESSA--EKS 737

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           I  W+ +I+ +G HG G  ++ +F +M  SGV+    TF + L ACSH GL DEGL  ++
Sbjct: 738 IACWNSMISAFGFHGLGLKSIEIFWKMNNSGVKATRSTFIALLSACSHSGLTDEGLKYYH 797

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            M+E+       +H+ C+VD+LGRAGRL EA+  + ++P K  H VWGALL AC     +
Sbjct: 798 LMIEHFGIIPTPEHHVCVVDMLGRAGRLQEAHKFVESLPSKQAHGVWGALLSACSKKSEL 857

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           ++ E  AK L  LEPEN G YV +S LY+    W  A  VRD++ +KGL K    S+I
Sbjct: 858 KMCESVAKHLLCLEPENSGYYVTMSNLYAYQDMWSGAVQVRDILQDKGLMKPRGRSII 915



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 148/539 (27%), Positives = 260/539 (48%), Gaps = 21/539 (3%)

Query: 5   SHHTLPKTTHLVIKLVQQYAATKSIA-----GTKQLHAFIITSGPLF-THLRSSLVRAYG 58
           +HH L +T      +V+   A +  +     G   LH   + SG +    +R+S++ AY 
Sbjct: 50  AHHLLDETPRRASSIVRALGACRGASREEADGVAALHCAALKSGAVLDPPVRTSVITAYS 109

Query: 59  HVSNV---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR-LGEYNPDNYTY 114
            V +V     +FDE +     L+N  +     N    D++ +F  M+  LG    D+ + 
Sbjct: 110 RVRDVCSALQVFDEAAAPDLILWNAAISALTLNCRYGDAVVLFRWMVDVLGVI--DSTSM 167

Query: 115 PIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
            I++   +     + GIA HG  L    D D  + N L+ MY   G+  ++  VF  M  
Sbjct: 168 VIMLSGASRARSLEHGIAFHGMALKRCLDTDLSLWNTLMDMYAKCGDFYSSEVVFQRMPY 227

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI-EMGRM 233
               SWN+++SG   N  A+ +   F  M++S  + D  S+  VL AC +LK++   G  
Sbjct: 228 RDTTSWNSMVSGSLFNGLAEISAYYFKEMVRSSFQADEVSLSCVLSACSHLKDLFSFGES 287

Query: 234 IH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
           +H  ++  G      +  N+L+  Y + G    A  VF   S +++VTW +MI G   N 
Sbjct: 288 VHSSVIKLGYEDTTSSVANSLITFYYELGFPEAAEEVFLSTSNKNLVTWNAMIKGLVEND 347

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ-NLECEVIVE 351
            V  A+ +FQ M+ +  +P+  T+ +++SAC     L  G+ +H + IK+ ++  E  V 
Sbjct: 348 RVNEAMCMFQEMRSKN-QPDVATLVTIISACGDHGLLPEGKEVHGYIIKKGHIYEECSVG 406

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN-GLARKAVELFRQMLVEVV 410
            +L+D+Y KCN    +  +F     +  + WN +++G   N  L  +A  +F+ +L E +
Sbjct: 407 NSLLDLYMKCNDPSTARILFRTMPMRDLISWNTMISGYSRNDSLGEEAKAMFKGLLSEGL 466

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
               +T+ +++P+     DL    ++H ++++YGFL+ V  +  LI +Y  CG   +A  
Sbjct: 467 SCTLSTVVAVIPSCFCPQDLNFGKSVHSFILKYGFLTGVSAANSLIHMYICCGDSLAAFS 526

Query: 471 IFSEI-PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS-GVQPNEVTFTSALHAC 527
           +   I PI   DI+ W+  I G   +G    A+  F+ M  +  + P+ +T  S L  C
Sbjct: 527 LLESITPI--SDIISWNTAIVGCVQNGLYGDALEAFQFMHSTLTLNPDSITLVSVLSVC 583



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/507 (27%), Positives = 236/507 (46%), Gaps = 20/507 (3%)

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
           ALH   L +G  +D  V   +I  Y    +V +A +VFD      ++ WN  IS    N 
Sbjct: 84  ALHCAALKSGAVLDPPVRTSVITAYSRVRDVCSALQVFDEAAAPDLILWNAAISALTLNC 143

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
              +A+V+F WM+      D  S+V +L      + +E G   H +     L  +++ WN
Sbjct: 144 RYGDAVVLFRWMVDVLGVIDSTSMVIMLSGASRARSLEHGIAFHGMALKRCLDTDLSLWN 203

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            L+DMY KCG    + +VF RM  RD  +W SM++G   NG    +   F+ M     + 
Sbjct: 204 TLMDMYAKCGDFYSSEVVFQRMPYRDTTSWNSMVSGSLFNGLAEISAYYFKEMVRSSFQA 263

Query: 312 NSLTIGSLLSACSSLYYL-KRGRSLHAWTIKQNLE-CEVIVETALIDMYAKCNLVKLSFQ 369
           + +++  +LSACS L  L   G S+H+  IK   E     V  +LI  Y +    + + +
Sbjct: 264 DEVSLSCVLSACSHLKDLFSFGESVHSSVIKLGYEDTTSSVANSLITFYYELGFPEAAEE 323

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           VF  TS K  V WNA++ G V N    +A+ +F++M  +  +P+ ATL +++ A      
Sbjct: 324 VFLSTSNKNLVTWNAMIKGLVENDRVNEAMCMFQEMRSK-NQPDVATLVTIISACGDHGL 382

Query: 430 LQQAMNIHCYLIRYGFL-SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
           L +   +H Y+I+ G +     V   L+D+Y KC    +A  +F  +P+  +D++ W+ +
Sbjct: 383 LPEGKEVHGYIIKKGHIYEECSVGNSLLDLYMKCNDPSTARILFRTMPM--RDLISWNTM 440

Query: 489 IAGYGMHGH-GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN- 546
           I+GY  +   GE A ++FK ++  G+     T  + + +C     L+ G  + +F+L+  
Sbjct: 441 ISGYSRNDSLGEEAKAMFKGLLSEGLSCTLSTVVAVIPSCFCPQDLNFGKSVHSFILKYG 500

Query: 547 -----HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
                    S    Y C  D L        A+ L+ ++        W   +  CV +G  
Sbjct: 501 FLTGVSAANSLIHMYICCGDSLA-------AFSLLESITPISDIISWNTAIVGCVQNGLY 553

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKL 628
                A +++      NP +  L+S L
Sbjct: 554 GDALEAFQFMHSTLTLNPDSITLVSVL 580


>gi|296085462|emb|CBI29194.3| unnamed protein product [Vitis vinifera]
          Length = 862

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 213/618 (34%), Positives = 331/618 (53%), Gaps = 32/618 (5%)

Query: 49  LRSSLVRAYGHVSNVR---ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
             +SL+  Y    +++   ILF EM  +    +N ++   A N    ++  +   M  LG
Sbjct: 254 FENSLISLYSQCRDIQAAEILFKEMKYKDIVSWNAMLDGLALNQRIWEAFDLLHEMQLLG 313

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
              PD+ T  I+I  C +L   + G A+HG  L     +D  V N LI MY    +VK A
Sbjct: 314 CVQPDSVTVVIIIPLCAELMLLREGRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRA 373

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
                   EH              N +++EA  +F  +L+S  +   ++++++LP+C   
Sbjct: 374 --------EH--------------NGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSS 411

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER-DVVTWTSM 284
           + ++ G  IH          N  A N+L+ MY+ CG +     +   +S   D+V W ++
Sbjct: 412 EFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINCGDLVACFSLLQTVSAAADIVCWNTV 471

Query: 285 INGYALNGDVRNALGLFQLM-QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN 343
           + G   NG    AL  F LM Q   V  +S+ + +++SAC +L  L  G SLH   +K  
Sbjct: 472 MAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVISACGNLELLFAGGSLHGLALKTL 531

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
           +E ++ V+ ALI MY +C  ++ +  +F  +  +    WN +++    N   R+A+ELF 
Sbjct: 532 MESDIRVQNALITMYGRCGEIENARIIFGFSCNRNLCSWNCMISAFSQNKDGRRALELFC 591

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
            +     EPN+ T+  +L A   L  L+    IH ++IR        VS  L D+YS CG
Sbjct: 592 HI---EFEPNEITIVGILSACTQLGVLRHGKQIHGHVIRSRLQGNSFVSAALEDMYSNCG 648

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            L++A +IF   P  ++ +  W+ +I+ +G H +G  A+ LF EM + G +P + TF S 
Sbjct: 649 RLDTAFQIFQSSP--ERSVAAWNSMISAFGFHSNGGKAIELFHEMRECGTRPTKSTFISL 706

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           L ACSH GL++EGL  ++ MLE     +  +H+ C+VD+LGRAGRL EAY+ IR MP +P
Sbjct: 707 LSACSHSGLVNEGLWYYSNMLELFNVEADTEHHVCMVDMLGRAGRLGEAYEFIRQMPTQP 766

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643
              VWGALL AC  HG++++G   A+ LFELEPEN G Y+ LS +Y A  RWKDA  +R 
Sbjct: 767 EPGVWGALLSACSYHGDLKMGREVAELLFELEPENVGYYISLSNMYVAAGRWKDAVELRR 826

Query: 644 VMDEKGLRKAPAHSLIEV 661
           ++ +KGL+K  A+SLI+V
Sbjct: 827 IIQDKGLKKPAAYSLIDV 844



 Score =  218 bits (555), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 163/568 (28%), Positives = 273/568 (48%), Gaps = 39/568 (6%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHL--RSSLVRAYGHVSNVR---ILFDEM 70
           VI  ++ +AA  +       H      G L  HL   +SL+ AY   ++      LFDE+
Sbjct: 16  VIYFIKSFAARPTNVTASIAHCLAFKMGAL-AHLPTSTSLLTAYSRAADFSSSWALFDEI 74

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
             R   L+N ++    +N     ++ +F+ ++  G    D+ T  IV+ A + +     G
Sbjct: 75  LYRDVILWNAMITASVENQCFGVAVNLFVELMGEG-VGLDSTTLLIVVSASSHMGNLTQG 133

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
             LHG    TG   D+F+ N LI MY   GE+ ++  VF  M    ++SWN+++ G   N
Sbjct: 134 RVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSSECVFGGMEYRDIISWNSMMRGCAYN 193

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG-KNIAA 249
            Y K++L  F  M  S  + D  S+   + A   L E+  G++IH    G +LG K+I+ 
Sbjct: 194 NYPKKSLWYFKKMAYSSEQADNVSLTCAVSASALLGELSFGQVIHGW--GIKLGYKDISH 251

Query: 250 ---WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
               N+L+ +Y +C  +  A ++F  M  +D+V+W +M++G ALN  +  A  L   MQ 
Sbjct: 252 NSFENSLISLYSQCRDIQAAEILFKEMKYKDIVSWNAMLDGLALNQRIWEAFDLLHEMQL 311

Query: 307 EG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            G V+P+S+T+  ++  C+ L  L+ GR++H  T+++ +  +  V  +LIDMY+KC  VK
Sbjct: 312 LGCVQPDSVTVVIIIPLCAELMLLREGRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVK 371

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            +                       HNG +R+A  LFRQ+L    + + +TL ++LP+  
Sbjct: 372 RA----------------------EHNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCD 409

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
               LQ   +IHC+ ++ GF +       L+ +Y  CG L +   +   +     DIV W
Sbjct: 410 SSEFLQFGESIHCWQLKLGFANNPLAVNSLMLMYINCGDLVACFSLLQTVSAA-ADIVCW 468

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQS-GVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           + ++AG   +GH   A+  F  M Q   V  + V   + + AC +  LL  G  L    L
Sbjct: 469 NTVMAGCTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVISACGNLELLFAGGSLHGLAL 528

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEA 572
           +     S       ++ + GR G ++ A
Sbjct: 529 KTLME-SDIRVQNALITMYGRCGEIENA 555



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/384 (28%), Positives = 178/384 (46%), Gaps = 19/384 (4%)

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           +L+  Y +    + +  +FD +  RDV+ W +MI     N     A+ LF  +  EGV  
Sbjct: 53  SLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEGVGL 112

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +S T+  ++SA S +  L +GR LH  + K  L  +  +  ALIDMYAKC  +  S  VF
Sbjct: 113 DSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSSECVF 172

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
                +  + WN+++ GC +N   +K++  F++M     + ++ +L   + A A+L +L 
Sbjct: 173 GGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASALLGELS 232

Query: 432 QAMNIHCYLIRYGFLSVVEVS--TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
               IH + I+ G+  +   S    LI +YS+C  +++A  +F E  +K KDIV W+ ++
Sbjct: 233 FGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRDIQAAEILFKE--MKYKDIVSWNAML 290

Query: 490 AGYGMHGHGETAVSLFKEMVQSG-VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
            G  ++     A  L  EM   G VQP+ VT    +  C+   LL EG  +    L    
Sbjct: 291 DGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLLREGRAVHGLTLRREM 350

Query: 549 ------TCSRADHYTCIVDLLGRA---GRLDEAYDLIRTMPLKPTHAVWGALLG---ACV 596
                 T S  D Y+   D + RA   G   EA  L R +    +      LL    +C 
Sbjct: 351 GLDFSVTNSLIDMYSKCKD-VKRAEHNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCD 409

Query: 597 IHGNVELGEVAAKWLFELE-PENP 619
               ++ GE    W  +L    NP
Sbjct: 410 SSEFLQFGESIHCWQLKLGFANNP 433


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 209/616 (33%), Positives = 327/616 (53%), Gaps = 38/616 (6%)

Query: 79  NTVMKMYAQNGASHDSLKM---FLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHG 135
           N  +  +++ G S  S K+   F+G +   E+N  ++ Y   ++ C        G  LH 
Sbjct: 5   NNFLIQFSRRGFSVQSAKLTQEFVGHVSPSEFN--SHAYANALQDCIQKDEPSRGKGLHC 62

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
            +L  G  +D F  N L+ MY+    +  A K+FD M E + +S+ TLI GY ++    E
Sbjct: 63  EILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLE 122

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           A+ +F  + + G E +     ++L         E+G  IH  +       N     AL+D
Sbjct: 123 AIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALID 182

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
            Y  CG V+ AR VFD +  +D+V+WT M+  +A N   + AL LF  M+  G +PN+ T
Sbjct: 183 AYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFT 242

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
             S+  AC  L     G+S+H   +K   E ++ V  AL+D+Y K   +  + + F    
Sbjct: 243 FASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIP 302

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
           KK  +PW+ ++A    +  +++AVE+F QM   +V PN  T  S+L A A +  L     
Sbjct: 303 KKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQ 362

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           IHC++I+ G  S V VS  L+D+Y+KCG +E++ ++F+E P ++   V W+ +I G+   
Sbjct: 363 IHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRND--VTWNTVIVGHVQL 420

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALH------------------------------ 525
           G GE A+ LF  M++  VQ  EVT++SAL                               
Sbjct: 421 GDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVL 480

Query: 526 -ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            AC++ GLLD+G   F  M+++H      +HYTC+V LLGR G LD+A  LI  +P +P+
Sbjct: 481 SACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPS 540

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
             VW ALLGACVIH ++ELG ++A+ + E+EP++   +VLLS +Y+  +RW +  +VR  
Sbjct: 541 VMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKN 600

Query: 645 MDEKGLRKAPAHSLIE 660
           M  KG++K P  S IE
Sbjct: 601 MKRKGVKKEPGLSWIE 616



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 145/467 (31%), Positives = 245/467 (52%), Gaps = 15/467 (3%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG-EYNPDNYTYPIVIKACTDL 124
           LFDEM ER++  + T+++ YA++    +++++F+ + R G E NP  +T  + +   TD 
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDC 154

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
              +LG  +H  +   G + + FVG  LI  Y   G V  AR+VFD +    +VSW  ++
Sbjct: 155 G--ELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMV 212

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           + + +N   KEAL +F  M   G +P+  +  SV  AC  L+  ++G+ +H      R  
Sbjct: 213 TCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYE 272

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            ++    AL+D+Y K G +++AR  F+ + ++DV+ W+ MI  YA +   + A+ +F  M
Sbjct: 273 LDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQM 332

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
           +   V PN  T  S+L AC+++  L  G  +H   IK  L  +V V  AL+D+YAKC  +
Sbjct: 333 RQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRM 392

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
           + S ++FA +  +  V WN ++ G V  G   KA+ LF  ML   V+  + T +S L A 
Sbjct: 393 ENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRAC 452

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           A LA L+  + IH   ++   L+ V    G++   +  G L+     F+ + I+D  I  
Sbjct: 453 ASLAALEPGLQIHSLTVKPDKLTFV----GVLSACANAGLLDQGQAYFTSM-IQDHGIEP 507

Query: 485 ----WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
               ++ ++   G  GH + AV L  E+     QP+ + + + L AC
Sbjct: 508 CIEHYTCMVWLLGRGGHLDKAVKLIDEI---PFQPSVMVWRALLGAC 551



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 207/452 (45%), Gaps = 74/452 (16%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++L+ AY   G V   R +FD +  +    +  ++  +A+N    ++LK+F  M  +G +
Sbjct: 178 TALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVG-F 236

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            P+N+T+  V KAC  L    +G ++HG  L + +++D +VG  L+ +Y   G++  AR+
Sbjct: 237 KPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARR 296

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
            F+ + +  V+ W+ +I+ Y ++  +KEA+ +F  M ++ V P+  +  SVL AC  ++ 
Sbjct: 297 AFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEG 356

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           + +G  IH  V    L  ++   NAL+D+Y KCG +  +  +F     R+ VTW ++I G
Sbjct: 357 LNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVG 416

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           +   GD   AL LF  M    V+   +T  S L AC+SL  L+ G  +H+ T+K +    
Sbjct: 417 HVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPD---- 472

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
                            KL+F                +L+ C + GL  +    F  M+ 
Sbjct: 473 -----------------KLTFV--------------GVLSACANAGLLDQGQAYFTSMIQ 501

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           +                                  +G    +E  T ++ +  + G L+ 
Sbjct: 502 D----------------------------------HGIEPCIEHYTCMVWLLGRGGHLDK 527

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           A K+  EIP +   ++VW  ++    +H   E
Sbjct: 528 AVKLIDEIPFQ-PSVMVWRALLGACVIHNDIE 558



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 17/224 (7%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY---GHVSNVRILFDEMSE 72
           ++Q  A  + +    Q+H  +I  G    +F  + ++L+  Y   G + N   LF E   
Sbjct: 347 VLQACATMEGLNLGNQIHCHVIKIGLHSDVF--VSNALMDVYAKCGRMENSMELFAESPH 404

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           R+   +NTV+  + Q G    +L++FL ML          TY   ++AC  LA  + G+ 
Sbjct: 405 RNDVTWNTVIVGHVQLGDGEKALRLFLNMLEY-RVQATEVTYSSALRACASLAALEPGLQ 463

Query: 133 LHGRVLITGFDMDTFVG---NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           +H   L    D  TFVG    C  A  ++ G+      + D   E  +  +  ++    +
Sbjct: 464 IHS--LTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGR 521

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
             +  +A+ + D   +   +P      ++L AC    +IE+GR+
Sbjct: 522 GGHLDKAVKLID---EIPFQPSVMVWRALLGACVIHNDIELGRI 562


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 202/614 (32%), Positives = 315/614 (51%), Gaps = 73/614 (11%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           Y  ++K C D         +H  ++    + + F+ N L++ Y  F  +  AR+VFD M 
Sbjct: 18  YCELLKHCRDTK------KIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMP 71

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE------ 227
           + ++ SWNTL+S Y K A   E   VF  M    +     S++S     G+L +      
Sbjct: 72  QRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDM-VSWNSLISAYAGRGFLLQSVKAYN 130

Query: 228 ---------------------------IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
                                      + +G  +H  V        +   + LVDMY K 
Sbjct: 131 LMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKT 190

Query: 261 GSVNEARLVFDRMSERDVV-------------------------------TWTSMINGYA 289
           G V  AR  FD M E++VV                               +WT+MI G+ 
Sbjct: 191 GLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFT 250

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            NG  R A+ LF+ M+ E +  +  T GS+L+AC  +  L+ G+ +HA+ I+ + +  + 
Sbjct: 251 QNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIF 310

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           V +AL+DMY KC  +K +  VF + + K  V W A+L G   NG + +AV++F  M    
Sbjct: 311 VGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNG 370

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           +EP+D TL S++ + A LA L++    HC  +  G +S + VS  L+ +Y KCGS+E +H
Sbjct: 371 IEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSH 430

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
           ++FSE+   D+  V W+ +++GY   G     + LF+ M+  G +P++VTF   L ACS 
Sbjct: 431 RLFSEMSYVDE--VSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSR 488

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
            GL+ +G  +F  M++ H+     DHYTC++DL  RAGRL+EA   I  MP  P    W 
Sbjct: 489 AGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWA 548

Query: 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
           +LL +C  H N+E+G+ AA+ L +LEP N  +Y+LLS +Y+A  +W++  N+R  M +KG
Sbjct: 549 SLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKG 608

Query: 650 LRKAPAHSLIEVRN 663
           LRK P  S I+ +N
Sbjct: 609 LRKEPGCSWIKYKN 622



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 135/466 (28%), Positives = 228/466 (48%), Gaps = 33/466 (7%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F  M  R    +N+++  YA  G    S+K +  ML  G +N +      ++   +   
Sbjct: 97  VFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQG 156

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV------- 178
              LG+ +HG V+  GF    FVG+ L+ MY   G V  AR+ FD M E +VV       
Sbjct: 157 CVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIA 216

Query: 179 ------------------------SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
                                   SW  +I+G+ +N   +EA+ +F  M    +E D  +
Sbjct: 217 GLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYT 276

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
             SVL ACG +  ++ G+ +H  +       NI   +ALVDMY KC S+  A  VF +M+
Sbjct: 277 FGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMN 336

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
            ++VV+WT+M+ GY  NG    A+ +F  MQ  G+ P+  T+GS++S+C++L  L+ G  
Sbjct: 337 CKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQ 396

Query: 335 LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
            H   +   L   + V  AL+ +Y KC  ++ S ++F+  S    V W A+++G    G 
Sbjct: 397 FHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGK 456

Query: 395 ARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVST 453
           A + + LF  ML    +P+  T   +L A +    +Q+   I   +I+ +  + + +  T
Sbjct: 457 ANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYT 516

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            +ID++S+ G LE A K  +++P    D + W+ +++    H + E
Sbjct: 517 CMIDLFSRAGRLEEARKFINKMPF-SPDAIGWASLLSSCRFHRNME 561



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 17/178 (9%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPL-FTHLRSSLVRAYGHVSNVR---ILFDEMSERS 74
           ++   A   S+    Q H   + SG + F  + ++LV  YG   ++     LF EMS   
Sbjct: 381 VISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVD 440

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
              +  ++  YAQ G ++++L++F  ML  G + PD  T+  V+ AC+     + G+   
Sbjct: 441 EVSWTALVSGYAQFGKANETLRLFESMLAHG-FKPDKVTFIGVLSACS-----RAGLVQK 494

Query: 135 GRVLITGFDMDTFV------GNCLIAMYMNFGEVKAARKVFDAM-WEHSVVSWNTLIS 185
           G  +      +  +        C+I ++   G ++ ARK  + M +    + W +L+S
Sbjct: 495 GNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLS 552


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 198/498 (39%), Positives = 295/498 (59%), Gaps = 11/498 (2%)

Query: 174  EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
            + +V SWN++I+   +   + EAL  F  + K G+ P  +S    + +C  L ++  GRM
Sbjct: 1104 KSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRM 1163

Query: 234  IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
             H+         ++   +AL+DMY KCG + +AR +FD +  R+VV+WTSMI GY  N  
Sbjct: 1164 SHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQ 1223

Query: 294  VRNALGLFQLMQFE--------GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
              NAL LF+    E         V  +S+ + S+LSACS +        +H + +K+  +
Sbjct: 1224 ADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFD 1283

Query: 346  CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
              + V   L+D YAKC    +S +VF    +K  + WN+++A    +GL+ +A+E+F  M
Sbjct: 1284 GSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGM 1343

Query: 406  LVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
            +  V V  N  TL+++L A A    L+    IH  +I+      V V T +ID+Y KCG 
Sbjct: 1344 VRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGR 1403

Query: 465  LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
            +E A K F  +  K+K++  W+ ++AGYGMHG  + A+ +F +MV++GV+PN +TF S L
Sbjct: 1404 VEMAKKTFDRM--KEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVL 1461

Query: 525  HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
             ACSH GL++EG   FN M   +      +HY C+VDL GRAG L+EAY+LI+ M +KP 
Sbjct: 1462 AACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPD 1521

Query: 585  HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
              VWG+LLGAC IH NV+LGE+AA+ LFEL+P+N G YVLLS LY+   RW D E +R +
Sbjct: 1522 FVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRML 1581

Query: 645  MDEKGLRKAPAHSLIEVR 662
            M  + L K P  SL+E++
Sbjct: 1582 MKNRQLVKPPGFSLVELK 1599



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 152/477 (31%), Positives = 250/477 (52%), Gaps = 26/477 (5%)

Query: 51   SSLVRAYGHVSNVRILFDEMSERSSF-LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNP 109
            SS  R     SN+   F +  ++S+   +N+V+   A+ G S ++L+ F  + +LG   P
Sbjct: 1082 SSRRRPVSLSSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLI-P 1140

Query: 110  DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
               ++P  IK+C+ L     G   H +  + GF+ D FV + LI MY   G++K AR +F
Sbjct: 1141 TRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALF 1200

Query: 170  DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE-------P-DCASVVSVLPA 221
            D +   +VVSW ++I+GY +N  A  AL++F   L+   E       P D   +VSVL A
Sbjct: 1201 DEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSA 1260

Query: 222  CGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTW 281
            C  +    +   +H  V       +I   N L+D Y KCG    ++ VFD M E+D ++W
Sbjct: 1261 CSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISW 1320

Query: 282  TSMINGYALNGDVRNALGLFQ-LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
             SMI  YA +G    AL +F  +++  GVR N++T+ ++L AC+    L+ G+ +H   I
Sbjct: 1321 NSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVI 1380

Query: 341  KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
            K +LE  V V T++IDMY KC  V+++ + F R  +K    W A++AG   +G A++A++
Sbjct: 1381 KMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALD 1440

Query: 401  LFRQMLVEVVEPNDATLNSLLPAYAILADLQQ------AMNIHCYLIRYGFLSVVEVSTG 454
            +F +M+   V+PN  T  S+L A +    +++      AM  H Y I  G    +E    
Sbjct: 1441 IFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMK-HKYDIEPG----IEHYGC 1495

Query: 455  LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH---GETAVSLFKEM 508
            ++D++ + G L  A+ +   + +K  D VVW  ++    +H +   GE A     E+
Sbjct: 1496 MVDLFGRAGCLNEAYNLIKRMKMK-PDFVVWGSLLGACRIHKNVDLGEIAAQKLFEL 1551



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 180/387 (46%), Gaps = 36/387 (9%)

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           +L  C   K +   R IH  +    L  +      L+ +Y   G +  A L+F ++    
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
             TW  +I    +NG    AL L++ M  +G+  +  T   ++ AC++   +  G+ +H 
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR------------------------ 373
             IK     +V V+  LID Y KC   + + +VF +                        
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQE 209

Query: 374 -------TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
                     K  V W A++ G + N    +A+ELF++M  E + PN+ T+ SL+ A   
Sbjct: 210 ARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTE 269

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           +  L     IH Y I+      V + T LID+YSKCGS++ A ++F  +P   K +  W+
Sbjct: 270 MGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP--RKSLPTWN 327

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            +I   G+HG G+ A++LF EM +  V+P+ +TF   L AC H   + EG   F  M ++
Sbjct: 328 SMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQH 387

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAY 573
           +      +HY C+ +L  R+  LDEA+
Sbjct: 388 YGIAPIPEHYECMTELYARSNNLDEAF 414



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 185/375 (49%), Gaps = 32/375 (8%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H +++ +G   D  +   LI +Y   G +  A  +F  +      +WN +I     N  
Sbjct: 46  IHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGL 105

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLG------- 244
           +++AL+++  M+  G+  D  +   V+ AC     I++G+++H  L+  G  G       
Sbjct: 106 SEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNN 165

Query: 245 -----------------------KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTW 281
                                  +N+ +W  ++   + CG + EAR +FD +  ++VV+W
Sbjct: 166 LIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSW 225

Query: 282 TSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
           T+MINGY  N     AL LF+ MQ E + PN  T+ SL+ AC+ +  L  GR +H + IK
Sbjct: 226 TAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK 285

Query: 342 QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVEL 401
             +E  V + TALIDMY+KC  +K + +VF    +K    WN+++     +GL ++A+ L
Sbjct: 286 NCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNL 345

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYS 460
           F +M    V+P+  T   +L A   + ++++       + + YG   + E    + ++Y+
Sbjct: 346 FSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYA 405

Query: 461 KCGSLESAHKIFSEI 475
           +  +L+ A K   E+
Sbjct: 406 RSNNLDEAFKSTKEV 420



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 188/386 (48%), Gaps = 51/386 (13%)

Query: 27  KSIAGTKQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVM 82
           K+    +Q+HA II SG     L T     L   +G ++   +LF ++    +F +N ++
Sbjct: 38  KNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLII 97

Query: 83  KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
           +    NG S  +L ++  M+  G    D +T+P VIKACT+     LG  +HG ++  GF
Sbjct: 98  RANTINGLSEQALMLYKNMVCQG-IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGF 156

Query: 143 DMDTFVGNCLIAMY-------------------------------MNFGEVKAARKVFDA 171
             D FV N LI  Y                               ++ G+++ AR++FD 
Sbjct: 157 SGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDE 216

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           +   +VVSW  +I+GY +N   +EAL +F  M    + P+  ++VS++ AC  +  + +G
Sbjct: 217 IPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG 276

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           R IH+      +   +    AL+DMY KCGS+ +A  VF+ M  + + TW SMI    ++
Sbjct: 277 RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVH 336

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG-----RSLHAW---TIKQN 343
           G  + AL LF  M+   V+P+++T   +L AC  +  +K G     R    +    I ++
Sbjct: 337 GLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEH 396

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQ 369
            EC       + ++YA+ N +  +F+
Sbjct: 397 YEC-------MTELYARSNNLDEAFK 415



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 119/429 (27%), Positives = 197/429 (45%), Gaps = 56/429 (13%)

Query: 262  SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
            S N A   +  + + +V +W S+I   A  GD   AL  F  ++  G+ P   +    + 
Sbjct: 1091 SSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIK 1150

Query: 322  ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
            +CS+L  L  GR  H        E ++ V +ALIDMY+KC  +K +  +F     +  V 
Sbjct: 1151 SCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVS 1210

Query: 382  WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT--------LNSLLPAYAILADLQQA 433
            W +++ G V N  A  A+ LF+  L E  E  D          + S+L A + ++     
Sbjct: 1211 WTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGIT 1270

Query: 434  MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
              +H ++++ GF   + V   L+D Y+KCG    + K+F    +++KD + W+ +IA Y 
Sbjct: 1271 EGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDW--MEEKDDISWNSMIAVYA 1328

Query: 494  MHGHGETAVSLFKEMVQS-GVQPNEVTFTSALHACSHGGLLDEG---------LDL-FNF 542
              G    A+ +F  MV+  GV+ N VT ++ L AC+H G L  G         +DL +N 
Sbjct: 1329 QSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNV 1388

Query: 543  -----MLENHQTCSRAD---------------HYTCIVDLLGRAGRLDEAYDLIRTM--- 579
                 +++ +  C R +                +T +V   G  GR  EA D+   M   
Sbjct: 1389 CVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRA 1448

Query: 580  PLKPTHAVWGALLGACVIHGNVELG---EVAAKWLFELEP--ENPGNYV-------LLSK 627
             +KP +  + ++L AC   G VE G     A K  +++EP  E+ G  V        L++
Sbjct: 1449 GVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNE 1508

Query: 628  LYSAVRRWK 636
             Y+ ++R K
Sbjct: 1509 AYNLIKRMK 1517



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 150/333 (45%), Gaps = 45/333 (13%)

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           LL  C +  +L   R +HA  I+  L  + ++   LI +Y+    +  +  +F +     
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
           T  WN I+     NGL+ +A+ L++ M+ + +  +  T   ++ A      +     +H 
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 439 YLIRYGFLSVVEVSTGLIDIYSK-------------------------------CGSLES 467
            LI+YGF   V V   LID Y K                               CG L+ 
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQE 209

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A +IF EIP   K++V W+ +I GY  +   E A+ LFK M    + PNE T  S + AC
Sbjct: 210 ARRIFDEIP--SKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKAC 267

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           +  G+L  G  + ++ ++N   C     Y  T ++D+  + G + +A ++  TMP K + 
Sbjct: 268 TEMGILTLGRGIHDYAIKN---CIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK-SL 323

Query: 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
             W +++ +  +HG   LG+ A     E+E  N
Sbjct: 324 PTWNSMITSLGVHG---LGQEALNLFSEMERVN 353



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 149/285 (52%), Gaps = 9/285 (3%)

Query: 19   LVQQYAATKSIAG---TKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNVRI---LFDEMS 71
            +V   +A   ++G   T+ +H F++  G      + ++L+ AY       +   +FD M 
Sbjct: 1254 MVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWME 1313

Query: 72   ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
            E+    +N+++ +YAQ+G S ++L++F GM+R      +  T   V+ AC      + G 
Sbjct: 1314 EKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGK 1373

Query: 132  ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
             +H +V+    + +  VG  +I MY   G V+ A+K FD M E +V SW  +++GY  + 
Sbjct: 1374 CIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHG 1433

Query: 192  YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAAW 250
             AKEAL +F  M+++GV+P+  + VSVL AC +   +E G    + +     +   I  +
Sbjct: 1434 RAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHY 1493

Query: 251  NALVDMYVKCGSVNEARLVFDRMSER-DVVTWTSMINGYALNGDV 294
              +VD++ + G +NEA  +  RM  + D V W S++    ++ +V
Sbjct: 1494 GCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNV 1538


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 200/585 (34%), Positives = 328/585 (56%), Gaps = 43/585 (7%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           +IK  T +  +     LH + + T   +     + +I++Y N   +  A  +F  +    
Sbjct: 11  LIKNPTRIKSKSQAKQLHAQFIRTQ-SLSHTSASIVISIYTNLKLLHEALLLFKTLKSPP 69

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V++W ++I  +   +   +AL  F  M  SG  PD     SVL +C  + ++  G  +H 
Sbjct: 70  VLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHG 129

Query: 237 LVAGGRLGKNIAAW--NALVDMYVKC---GS----------------------------- 262
            +   RLG +   +  NAL++MY K    GS                             
Sbjct: 130 FIV--RLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCI 187

Query: 263 ----VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
               ++  R VF+ M  +DVV++ ++I GYA +G   +AL + + M    ++P+S T+ S
Sbjct: 188 MPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSS 247

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           +L   S    + +G+ +H + I++ ++ +V + ++L+DMYAK   ++ S +VF+R   + 
Sbjct: 248 VLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRD 307

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
            + WN+++AG V NG   +A+ LFRQM+   V+P     +S++PA A LA L     +H 
Sbjct: 308 GISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHG 367

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           Y++R GF S + +++ L+D+YSKCG++++A KIF  + + D+  V W+ II G+ +HGHG
Sbjct: 368 YVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDE--VSWTAIIMGHALHGHG 425

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
             AVSLF+EM + GV+PN+V F + L ACSH GL+DE    FN M + +      +HY  
Sbjct: 426 HEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAA 485

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
           + DLLGRAG+L+EAY+ I  M ++PT +VW  LL +C +H N+EL E  A+ +F ++ EN
Sbjct: 486 VADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSEN 545

Query: 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            G YVL+  +Y++  RWK+   +R  M +KGLRK PA S IE++N
Sbjct: 546 MGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKN 590



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 141/535 (26%), Positives = 256/535 (47%), Gaps = 46/535 (8%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRA----YGHVSNVR 64
           +  +  L+  L++     KS +  KQLHA  I +  L +H  +S+V +       +    
Sbjct: 1   MSSSKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQSL-SHTSASIVISIYTNLKLLHEAL 59

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           +LF  +       + +V++ +        +L  F+ M   G   PD+  +P V+K+CT +
Sbjct: 60  LLFKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRC-PDHNVFPSVLKSCTMM 118

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMY---------------------------- 156
              + G ++HG ++  G D D + GN L+ MY                            
Sbjct: 119 MDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGD 178

Query: 157 ---------MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
                    M FG + + R+VF+ M    VVS+NT+I+GY ++   ++AL +   M  + 
Sbjct: 179 EDVKAETCIMPFG-IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTD 237

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           ++PD  ++ SVLP      ++  G+ IH  V    +  ++   ++LVDMY K   + ++ 
Sbjct: 238 LKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSE 297

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VF R+  RD ++W S++ GY  NG    AL LF+ M    V+P ++   S++ AC+ L 
Sbjct: 298 RVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLA 357

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L  G+ LH + ++      + + +AL+DMY+KC  +K + ++F R +    V W AI+ 
Sbjct: 358 TLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIM 417

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFL 446
           G   +G   +AV LF +M  + V+PN     ++L A + +  + +A      + + YG  
Sbjct: 418 GHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLN 477

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
             +E    + D+  + G LE A+   S++ ++     VWS +++   +H + E A
Sbjct: 478 QELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTG-SVWSTLLSSCSVHKNLELA 531



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/346 (31%), Positives = 191/346 (55%), Gaps = 6/346 (1%)

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           + +VR +F+ M  +    YNT++  YAQ+G   D+L+M   M    +  PD++T   V+ 
Sbjct: 192 IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREM-GTTDLKPDSFTLSSVLP 250

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
             ++      G  +HG V+  G D D ++G+ L+ MY     ++ + +VF  ++    +S
Sbjct: 251 IFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGIS 310

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WN+L++GY +N    EAL +F  M+ + V+P   +  SV+PAC +L  + +G+ +H  V 
Sbjct: 311 WNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVL 370

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
            G  G NI   +ALVDMY KCG++  AR +FDRM+  D V+WT++I G+AL+G    A+ 
Sbjct: 371 RGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVS 430

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS-LHAWTIKQNLECEVIVETALIDMY 358
           LF+ M+ +GV+PN +   ++L+ACS +  +       ++ T    L  E+    A+ D+ 
Sbjct: 431 LFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLL 490

Query: 359 AKCNLVKLSFQVFARTSKKKTVP-WNAILAGC-VHNG--LARKAVE 400
            +   ++ ++   ++   + T   W+ +L+ C VH    LA K  E
Sbjct: 491 GRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAE 536


>gi|91805385|gb|ABE65422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 205/589 (34%), Positives = 317/589 (53%), Gaps = 41/589 (6%)

Query: 107 YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR 166
           ++P+ +T+P ++K+C  L     G  LH +V+ TGF +D F    L++MYM   +V  A 
Sbjct: 27  HSPNKFTFPPLLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTATALVSMYMKVKQVTDAL 86

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           KV D M E  + S N  +SG  +N + ++A  +F     SG   +  +V SVL  CG   
Sbjct: 87  KVLDEMPERGIASVNAAVSGLLENGFCRDAFRMFGDARVSGSGMNSVTVASVLGGCG--- 143

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
           +IE G  +H L         +    +LV MY +CG    A  +F+++  + VVT+ + I+
Sbjct: 144 DIEGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHKSVVTYNAFIS 203

Query: 287 GYALNGDVRNALGLFQLM-QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           G   NG +     +F LM +F    PN +T  + ++AC+SL  L+ GR LH   +K+  +
Sbjct: 204 GLMENGVMNLVPSVFNLMRKFSSEEPNDVTFVNAITACASLLNLQYGRQLHGLVMKKEFQ 263

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT-VPWNAILAGCVHNGLARKAVELFRQ 404
            E +V TALIDMY+KC   K ++ VF      +  + WN++++G + NG    AVELF +
Sbjct: 264 FETMVGTALIDMYSKCRCWKSAYIVFTELKDTRNLISWNSVISGMMINGQHETAVELFEK 323

Query: 405 MLVEVVEPNDATLNSLLPAYAILAD----------------------------------- 429
           +  E ++P+ AT NSL+  ++ L                                     
Sbjct: 324 LDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTSLLSACSDIWT 383

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L+    IH ++I+      + V T LID+Y KCG    A +IF     K +D V W+V+I
Sbjct: 384 LKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWARRIFDRFEPKPRDPVFWNVMI 443

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           +GYG HG  E+A+ +F+ + +  V+P+  TFT+ L ACSH G +++G  +F  M E +  
Sbjct: 444 SGYGKHGECESAIEIFELLREEKVEPSLATFTAVLSACSHCGNVEKGSQIFRLMQEEYGY 503

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
               +H  C++DLLGR+GRL EA ++I  M    +     +LLG+C  H +  LGE AA 
Sbjct: 504 KPSTEHIGCMIDLLGRSGRLREAKEVIDQMSEPSSSVY-SSLLGSCRQHLDPVLGEEAAM 562

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSL 658
            L ELEPENP  +V+LS +Y+A+ RW+D E++R V+D+K L K P  SL
Sbjct: 563 KLAELEPENPAPFVILSSIYAALERWEDVESIRQVIDQKQLVKLPGLSL 611



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 148/520 (28%), Positives = 248/520 (47%), Gaps = 59/520 (11%)

Query: 2   NGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY- 57
           + P+  T P        L++  A    +   + LHA ++ +G    +FT   ++LV  Y 
Sbjct: 27  HSPNKFTFPP-------LLKSCAKLGDVVQGRILHAQVVKTGFFVDVFTA--TALVSMYM 77

Query: 58  --GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
               V++   + DEM ER     N  +    +NG   D+ +MF G  R+     ++ T  
Sbjct: 78  KVKQVTDALKVLDEMPERGIASVNAAVSGLLENGFCRDAFRMF-GDARVSGSGMNSVTVA 136

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
            V+  C D+   + G+ LH   + +GF+M+ +VG  L++MY   GE   A ++F+ +   
Sbjct: 137 SVLGGCGDI---EGGMQLHCLAMKSGFEMEVYVGTSLVSMYSRCGEWVLAARMFEKVPHK 193

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMI 234
           SVV++N  ISG  +N        VF+ M K S  EP+  + V+ + AC  L  ++ GR +
Sbjct: 194 SVVTYNAFISGLMENGVMNLVPSVFNLMRKFSSEEPNDVTFVNAITACASLLNLQYGRQL 253

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-RDVVTWTSMINGYALNGD 293
           H LV             AL+DMY KC     A +VF  + + R++++W S+I+G  +NG 
Sbjct: 254 HGLVMKKEFQFETMVGTALIDMYSKCRCWKSAYIVFTELKDTRNLISWNSVISGMMINGQ 313

Query: 294 VRNALGLFQLMQFEGVRPNSLT-----------------------------------IGS 318
              A+ LF+ +  EG++P+S T                                   + S
Sbjct: 314 HETAVELFEKLDSEGLKPDSATWNSLISGFSQLGKVIEAFKFFERMLSVVMVPSLKCLTS 373

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           LLSACS ++ LK G+ +H   IK   E ++ V T+LIDMY KC L   + ++F R   K 
Sbjct: 374 LLSACSDIWTLKNGKEIHGHVIKAAAERDIFVLTSLIDMYMKCGLSSWARRIFDRFEPKP 433

Query: 379 TVP--WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
             P  WN +++G   +G    A+E+F  +  E VEP+ AT  ++L A +   ++++   I
Sbjct: 434 RDPVFWNVMISGYGKHGECESAIEIFELLREEKVEPSLATFTAVLSACSHCGNVEKGSQI 493

Query: 437 HCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
              +   YG+    E    +ID+  + G L  A ++  ++
Sbjct: 494 FRLMQEEYGYKPSTEHIGCMIDLLGRSGRLREAKEVIDQM 533


>gi|242094978|ref|XP_002437979.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
 gi|241916202|gb|EER89346.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
          Length = 657

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 195/508 (38%), Positives = 296/508 (58%), Gaps = 8/508 (1%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           LHG  +  G+  DTFV + L  +Y    +V  ARKVFDA+     + WNTL++G    + 
Sbjct: 136 LHGLSVAAGYAADTFVASALAKLYFKLSKVDDARKVFDAVPSPDTILWNTLLAG-LPGSV 194

Query: 193 AKEALVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
           A EA V    M++ G V PD  ++ S L A      + MGR +H       L ++     
Sbjct: 195 ALEAFV---RMVEVGRVRPDSTTLASSLRAAAEASHVAMGRCVHGYGVKCGLAEHEHVVT 251

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            L+ +Y KCG ++ AR +FDRM + D+V + ++I+GY++NG V +++ LF+ +     RP
Sbjct: 252 GLMSLYSKCGDMDCARSLFDRMEDPDLVAYNALISGYSVNGMVESSVELFKELAASDWRP 311

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           NS T+ +++   S   +    R LHA+ +K  L+ + +V TAL  +Y + N ++ +  +F
Sbjct: 312 NSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIF 371

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
               +K    WNA+++G   NGL   AVELF+ M    V+PN  T++S L A A L  L 
Sbjct: 372 DAMPEKTMESWNAMISGYAQNGLTEMAVELFQLMQELNVQPNPTTISSTLSACAQLGALS 431

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               +H  + +      V V T LID+Y+KCGS+  A  IF  +   +K++V W+ +I+G
Sbjct: 432 LGTWVHRIIAKENLELNVYVMTALIDMYAKCGSIAEARSIFDRM--DNKNVVSWNAMISG 489

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           YG+HG G  A+ L+K M+ + + P   TF S L+ACSHGGL+DEG  +F  M   ++   
Sbjct: 490 YGLHGRGAEALKLYKSMLDACILPTSSTFLSVLYACSHGGLVDEGQKVFRVMTNEYRISP 549

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT-HAVWGALLGACVIHGNVELGEVAAKW 610
             +H TC+VDLLGRAG+L+EA DLI   P       VWGALL AC++H N +L ++A++ 
Sbjct: 550 GIEHCTCMVDLLGRAGKLNEALDLISEFPQSAIGPGVWGALLSACMVHKNSDLAKLASQK 609

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDA 638
           LFEL+ EN G YVLLS LY++ + + +A
Sbjct: 610 LFELDSENAGYYVLLSNLYTSKKHYSEA 637



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 146/481 (30%), Positives = 240/481 (49%), Gaps = 11/481 (2%)

Query: 27  KSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVM 82
           +  A  + LH   + +G    T + S+L + Y  +S V   R +FD +    + L+NT++
Sbjct: 128 RDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSKVDDARKVFDAVPSPDTILWNTLL 187

Query: 83  KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
                + A    L+ F+ M+ +G   PD+ T    ++A  + +   +G  +HG  +  G 
Sbjct: 188 AGLPGSVA----LEAFVRMVEVGRVRPDSTTLASSLRAAAEASHVAMGRCVHGYGVKCGL 243

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
                V   L+++Y   G++  AR +FD M +  +V++N LISGY  N   + ++ +F  
Sbjct: 244 AEHEHVVTGLMSLYSKCGDMDCARSLFDRMEDPDLVAYNALISGYSVNGMVESSVELFKE 303

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           +  S   P+ +++V+V+P         + R +H  V   RL  +     AL  +Y +   
Sbjct: 304 LAASDWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLND 363

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           +  AR +FD M E+ + +W +MI+GYA NG    A+ LFQLMQ   V+PN  TI S LSA
Sbjct: 364 MESARSIFDAMPEKTMESWNAMISGYAQNGLTEMAVELFQLMQELNVQPNPTTISSTLSA 423

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           C+ L  L  G  +H    K+NLE  V V TALIDMYAKC  +  +  +F R   K  V W
Sbjct: 424 CAQLGALSLGTWVHRIIAKENLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSW 483

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--YAILADLQQAMNIHCYL 440
           NA+++G   +G   +A++L++ ML   + P  +T  S+L A  +  L D  Q +      
Sbjct: 484 NAMISGYGLHGRGAEALKLYKSMLDACILPTSSTFLSVLYACSHGGLVDEGQKV-FRVMT 542

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
             Y     +E  T ++D+  + G L  A  + SE P       VW  +++   +H + + 
Sbjct: 543 NEYRISPGIEHCTCMVDLLGRAGKLNEALDLISEFPQSAIGPGVWGALLSACMVHKNSDL 602

Query: 501 A 501
           A
Sbjct: 603 A 603


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 217/688 (31%), Positives = 350/688 (50%), Gaps = 46/688 (6%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRI---LFDEMSERS 74
           KL+ Q+ A+K ++    +HA II        LR+ LV  Y      R+   L  + SE  
Sbjct: 55  KLLLQFTASKDVSSGMAIHARIIRL--GLLGLRNRLVNLYSKCQCFRVARKLVIDSSEPD 112

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLG----EY----------------------- 107
              ++ ++  Y QNG   ++L  +  M  LG    E+                       
Sbjct: 113 LVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHR 172

Query: 108 ------------NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAM 155
                       +P+ ++   V+ AC  L     G+ +HG ++  G+D D F  N L+ M
Sbjct: 173 VALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDM 232

Query: 156 YMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASV 215
           Y   G  +AA  VF  + +  +VSWN +I+G   +     AL +   M    V P   ++
Sbjct: 233 YAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTL 292

Query: 216 VSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE 275
            S L AC  +  +++GR +H  +    +  +      L+DMY KCG + +AR+VFD M  
Sbjct: 293 SSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPX 352

Query: 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
           +DV+ W S+I+GY+  G    A+ LF  M  EG+  N  T+ ++L + +          +
Sbjct: 353 KDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQV 412

Query: 336 HAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLA 395
           H  +IK   + +  V  +L+D Y KC L++ + +VF     +  V + +++      GL 
Sbjct: 413 HTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLG 472

Query: 396 RKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGL 455
            +A++++ +M    ++P+    +SL  A A L+  +Q   IH ++++ G LS V     L
Sbjct: 473 EEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSL 532

Query: 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP 515
           +++Y+KCGS++ A  IF+EI  +   IV WS +I G   HGHG  A+ LF +M+++G+ P
Sbjct: 533 VNMYAKCGSIDDASCIFNEISWRG--IVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILP 590

Query: 516 NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDL 575
           N +T  S L AC+H GL+ E    F  M +        +HY C+VD+LGR GRLDEA  L
Sbjct: 591 NHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVL 650

Query: 576 IRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRW 635
           ++ MP + + AVWGALLGA  IH N+ELG  AA+ L  LEPE  G ++LL+ +Y++   W
Sbjct: 651 VKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMW 710

Query: 636 KDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            +   VR  M    ++K P  S IE+++
Sbjct: 711 DNVAKVRRSMKNSLVKKEPGMSWIELKD 738


>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 194/610 (31%), Positives = 326/610 (53%), Gaps = 48/610 (7%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD-- 123
           +F ++ E +   + T+M   AQ     ++ ++F  MLR G    D+ +   ++  C    
Sbjct: 195 VFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKG-IRVDSVSLSSMLGVCAKGE 253

Query: 124 --------LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
                   ++    G  +H   +  GF+ D  + N L+ MY   G++ +A KVF  +  H
Sbjct: 254 RDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVFVNLNRH 313

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
           SVVSWN +I+GY     +++A      M   G EPD  + +++L AC             
Sbjct: 314 SVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTAC------------- 360

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
                                 VK G V   R +FD M    + +W ++++GY  N D R
Sbjct: 361 ----------------------VKSGDVRTGRQIFDCMPCPSLTSWNAILSGYNQNADHR 398

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            A+ LF+ MQF+   P+  T+  +LS+C+ L +L+ G+ +HA + K     +V V ++LI
Sbjct: 399 EAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAGKEVHAASQKFGFYDDVYVASSLI 458

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           ++Y+KC  ++LS  VF++  +   V WN++LAG   N L + A+  F++M      P++ 
Sbjct: 459 NVYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEF 518

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           +  +++ + A L+ L Q    H  +++ GFL  + V + LI++Y KCG +  A   F  +
Sbjct: 519 SFATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFDVM 578

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
           P   ++ V W+ +I GY  +G G  A+ L+ +M+ SG +P+++T+ + L ACSH  L+DE
Sbjct: 579 P--GRNTVTWNEMIHGYAQNGDGHNALCLYNDMISSGEKPDDITYVAVLTACSHSALVDE 636

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           GL++FN ML+ +    +  HYTCI+D L RAGR +E   ++  MP K    VW  +L +C
Sbjct: 637 GLEIFNAMLQKYGVVPKVAHYTCIIDCLSRAGRFNEVEVILDAMPCKDDAVVWEVVLSSC 696

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
            IH N+ L + AA+ L+ L+P+N  +YVLL+ +YS++ +W DA  VRD+M    +RK P 
Sbjct: 697 RIHANLSLAKRAAEELYRLDPQNSASYVLLANMYSSLGKWDDAHVVRDLMSHNQVRKDPG 756

Query: 656 HSLIEVRNIL 665
           +S  + + IL
Sbjct: 757 YSRNDTQIIL 766



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 121/440 (27%), Positives = 222/440 (50%), Gaps = 11/440 (2%)

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
           H  +V++ F    ER   L N+++ MYA+ G    + K+F+ + R         ++ I+I
Sbjct: 272 HTLSVKLGF----ERDLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVV-----SWNIMI 322

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
               +    +       R+   G++ D      ++   +  G+V+  R++FD M   S+ 
Sbjct: 323 AGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGDVRTGRQIFDCMPCPSLT 382

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           SWN ++SGY +NA  +EA+ +F  M      PD  ++  +L +C  L  +E G+ +H   
Sbjct: 383 SWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAGKEVHAAS 442

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
                  ++   ++L+++Y KCG +  ++ VF ++ E DVV W SM+ G+++N   ++AL
Sbjct: 443 QKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSINSLGQDAL 502

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
             F+ M+  G  P+  +  +++S+C+ L  L +G+  HA  +K     ++ V ++LI+MY
Sbjct: 503 SFFKKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMY 562

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
            KC  V  +   F     + TV WN ++ G   NG    A+ L+  M+    +P+D T  
Sbjct: 563 CKCGDVNGARCFFDVMPGRNTVTWNEMIHGYAQNGDGHNALCLYNDMISSGEKPDDITYV 622

Query: 419 SLLPAYAILADLQQAMNI-HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           ++L A +  A + + + I +  L +YG +  V   T +ID  S+ G       I   +P 
Sbjct: 623 AVLTACSHSALVDEGLEIFNAMLQKYGVVPKVAHYTCIIDCLSRAGRFNEVEVILDAMPC 682

Query: 478 KDKDIVVWSVIIAGYGMHGH 497
           KD D VVW V+++   +H +
Sbjct: 683 KD-DAVVWEVVLSSCRIHAN 701



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 194/383 (50%), Gaps = 19/383 (4%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V   R +FD M   S   +N ++  Y QN    +++++F  M +    +PD  T  ++
Sbjct: 364 GDVRTGRQIFDCMPCPSLTSWNAILSGYNQNADHREAVELFRKM-QFQCQHPDRTTLAVI 422

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + +C +L + + G  +H      GF  D +V + LI +Y   G+++ ++ VF  + E  V
Sbjct: 423 LSSCAELGFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDV 482

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V WN++++G+  N+  ++AL  F  M + G  P   S  +V+ +C  L  +  G+  H  
Sbjct: 483 VCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQQFHAQ 542

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +       +I   ++L++MY KCG VN AR  FD M  R+ VTW  MI+GYA NGD  NA
Sbjct: 543 IVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFDVMPGRNTVTWNEMIHGYAQNGDGHNA 602

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL-HAWTIKQNLECEVIVETALID 356
           L L+  M   G +P+ +T  ++L+ACS    +  G  + +A   K  +  +V   T +ID
Sbjct: 603 LCLYNDMISSGEKPDDITYVAVLTACSHSALVDEGLEIFNAMLQKYGVVPKVAHYTCIID 662

Query: 357 MYAKC-NLVKLSFQVFARTSKKKTVPWNAILAGC-VHNGLA---RKAVELFRQMLVEVVE 411
             ++     ++   + A   K   V W  +L+ C +H  L+   R A EL+R      ++
Sbjct: 663 CLSRAGRFNEVEVILDAMPCKDDAVVWEVVLSSCRIHANLSLAKRAAEELYR------LD 716

Query: 412 PNDATLNSLLPAYAILADLQQAM 434
           P ++       +Y +LA++  ++
Sbjct: 717 PQNSA------SYVLLANMYSSL 733



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 180/375 (48%), Gaps = 22/375 (5%)

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
           KNI +WNA++  Y K  ++  A  +F +M +R+ V+  ++I+     G  R AL  +  +
Sbjct: 70  KNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYDSV 129

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
             +GV P+ +T  ++ SAC SL     GR  H   IK  LE  + V  AL+ MYAKC L 
Sbjct: 130 MLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCGLN 189

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL--- 421
             + +VF    +   V +  ++ G       ++A ELFR ML + +  +  +L+S+L   
Sbjct: 190 ADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVC 249

Query: 422 --------PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
                   P + I  +  Q   +H   ++ GF   + +   L+D+Y+K G ++SA K+F 
Sbjct: 250 AKGERDVGPCHGISTN-AQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVF- 307

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
            + +    +V W+++IAGYG   + E A    + M   G +P++VT+ + L AC   G +
Sbjct: 308 -VNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGDV 366

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLK---PTHAVWGA 590
             G  +F+ M      C     +  I+    +     EA +L R M  +   P       
Sbjct: 367 RTGRQIFDCM-----PCPSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAV 421

Query: 591 LLGACVIHGNVELGE 605
           +L +C   G +E G+
Sbjct: 422 ILSSCAELGFLEAGK 436



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 110/402 (27%), Positives = 189/402 (47%), Gaps = 47/402 (11%)

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           + F  N ++A Y     ++ A ++F  M + + VS NTLIS   +  Y ++AL  +D ++
Sbjct: 71  NIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYDSVM 130

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
             GV P   +  +V  ACG L + + GR  H +V    L  NI   NAL+ MY KCG   
Sbjct: 131 LDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCGLNA 190

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
           +A  VF  + E + VT+T+M+ G A    ++ A  LF+LM  +G+R +S+++ S+L  C+
Sbjct: 191 DALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVCA 250

Query: 325 S----------LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
                      +    +G+ +H  ++K   E ++ +  +L+DMYAK   +  + +VF   
Sbjct: 251 KGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVFVNL 310

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
           ++   V WN ++AG  +   + KA E  ++M  +  EP+D T  ++L A           
Sbjct: 311 NRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACV--------- 361

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
                                     K G + +  +IF  +P     +  W+ I++GY  
Sbjct: 362 --------------------------KSGDVRTGRQIFDCMPC--PSLTSWNAILSGYNQ 393

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           +     AV LF++M      P+  T    L +C+  G L+ G
Sbjct: 394 NADHREAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAG 435



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 110/252 (43%), Gaps = 33/252 (13%)

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
           +  SL + +L+  C +      G+ +HA   +  L  +  +    I++Y+KC+ +  +  
Sbjct: 3   KSKSLNLANLVQHCITNKAHLSGKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASACH 62

Query: 370 VFARTSKKKTVPWNAILAG-C------------------------------VHNGLARKA 398
           VF     K    WNAILA  C                              V  G  R+A
Sbjct: 63  VFDNIPHKNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQA 122

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
           ++ +  ++++ V P+  T  ++  A   L D       H  +I+ G  S + V   L+ +
Sbjct: 123 LDTYDSVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCM 182

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           Y+KCG    A ++F +IP  + + V ++ ++ G       + A  LF+ M++ G++ + V
Sbjct: 183 YAKCGLNADALRVFRDIP--EPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSV 240

Query: 519 TFTSALHACSHG 530
           + +S L  C+ G
Sbjct: 241 SLSSMLGVCAKG 252


>gi|357514793|ref|XP_003627685.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358344437|ref|XP_003636296.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358345563|ref|XP_003636846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502231|gb|AES83434.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502781|gb|AES83984.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521707|gb|AET02161.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 791

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 211/644 (32%), Positives = 347/644 (53%), Gaps = 25/644 (3%)

Query: 34  QLHAFIITSGPLF-THLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           Q+H F++ +G +    + +SL++ Y   G       +F+ +S      +NT++  + +  
Sbjct: 105 QIHGFVVATGFVSRVTVSNSLMKMYCKAGRFELALCVFEGLSCPDIVSWNTILSGFEK-- 162

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK-----LGIALHGRVLITGFDM 144
            S D+L  F   + L     D  TY   +  C D  +        G+ LH  V+  GF  
Sbjct: 163 -SVDALN-FACFMHLNGVVFDPVTYTTALSFCWDRDYWDDHGFLFGLQLHSLVVKCGFGC 220

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA--YAKEALVVFDW 202
           + F+GN L+ MY  +G +  A +VF+ M    +VSWN ++SGY +    Y  EA+++F  
Sbjct: 221 EVFIGNALVTMYSRWGGLDEAGRVFNEMTIRDLVSWNAMLSGYAQEGECYGLEAVLLFGN 280

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           M++ G+  D  S+   + ACGY K +E G+ IH L      G ++A  N L+  Y KC  
Sbjct: 281 MVREGMLLDHVSLTGAISACGYTKNLEFGKQIHGLAQKLGYGTHVAVCNVLISTYSKCKV 340

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           + +A+ VF  MS R+VV+WT++I+      D  N + LF  M+ +GV PN +T   LL A
Sbjct: 341 LRDAKAVFQDMSARNVVSWTTLISI-----DEENVVSLFNAMRVDGVYPNDVTFIGLLHA 395

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
            +    +K G  +H   +K  L  E  V  +LI MYAK   ++ S ++F   + + T+ W
Sbjct: 396 ITIRNMVKEGLMVHGLCLKSCLSSEQNVSNSLITMYAKFESIQESKKIFEELNYQGTISW 455

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD--LQQAMNIHCYL 440
           NA+++G   NGL ++A   F   + E+ +PN  T  S+L A A   D  L+     H +L
Sbjct: 456 NALISGYAQNGLCKEAFLTFLSAIKEI-KPNQYTFGSVLNAIAAAEDISLKHGQRCHSHL 514

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           I+ G  +   V+  L+D+Y K G++  + ++F+E P  +K    W+ +I+ Y  HG  E+
Sbjct: 515 IKLGLNTDPFVAGALLDMYGKRGNINESQRVFNETP--EKTQFSWTGMISAYARHGDYES 572

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560
            +SL+KE+ + G   + +TF S L AC   G++D G  +F+ M++ H      +HY+ +V
Sbjct: 573 VMSLYKEIEREGSNLDSITFLSVLAACCRKGMVDVGHIIFDSMVKKHSIEPTPEHYSIMV 632

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620
           D+LGR GRLDEA +L+  +P  P  +V  +LLG+C +HGNVE+ E     L +++P + G
Sbjct: 633 DMLGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCKLHGNVEMAERVVDSLIQMDPGSSG 692

Query: 621 NYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
            YVL++ LY+    W+    VR  M  +G++K    S ++V N+
Sbjct: 693 PYVLMANLYAEKGNWEKVAEVRKGMRGRGVKKEVGFSWVDVANV 736



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 165/594 (27%), Positives = 271/594 (45%), Gaps = 56/594 (9%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGE-YNPDNYTYPIVIKACTDL 124
           LF+++ + ++   N  M  +        +L +F    +     N D  T  +  KAC   
Sbjct: 40  LFEKIPQPNASSINRSMLNFLHKNLPFQALSVFKNQTQFPFLQNIDEVTLALSFKACR-- 97

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
               LG  +HG V+ TGF     V N L+ MY   G  + A  VF+ +    +VSWNT++
Sbjct: 98  GEFILGAQIHGFVVATGFVSRVTVSNSLMKMYCKAGRFELALCVFEGLSCPDIVSWNTIL 157

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC---------GYLKEIEMGRMIH 235
           SG+ K+    +AL    +M  +GV  D  +  + L  C         G+L     G  +H
Sbjct: 158 SGFEKSV---DALNFACFMHLNGVVFDPVTYTTALSFCWDRDYWDDHGFL----FGLQLH 210

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
            LV     G  +   NALV MY + G ++EA  VF+ M+ RD+V+W +M++GYA  G+  
Sbjct: 211 SLVVKCGFGCEVFIGNALVTMYSRWGGLDEAGRVFNEMTIRDLVSWNAMLSGYAQEGECY 270

Query: 296 --NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              A+ LF  M  EG+  + +++   +SAC     L+ G+ +H    K      V V   
Sbjct: 271 GLEAVLLFGNMVREGMLLDHVSLTGAISACGYTKNLEFGKQIHGLAQKLGYGTHVAVCNV 330

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           LI  Y+KC +++ +  VF   S +  V W  +++    N      V LF  M V+ V PN
Sbjct: 331 LISTYSKCKVLRDAKAVFQDMSARNVVSWTTLISIDEEN-----VVSLFNAMRVDGVYPN 385

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
           D T   LL A  I   +++ + +H   ++    S   VS  LI +Y+K  S++ + KIF 
Sbjct: 386 DVTFIGLLHAITIRNMVKEGLMVHGLCLKSCLSSEQNVSNSLITMYAKFESIQESKKIFE 445

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS----- 528
           E+    +  + W+ +I+GY  +G  + A   F   ++  ++PN+ TF S L+A +     
Sbjct: 446 ELNY--QGTISWNALISGYAQNGLCKEAFLTFLSAIKE-IKPNQYTFGSVLNAIAAAEDI 502

Query: 529 --------HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
                   H  L+  GL+   F+               ++D+ G+ G ++E+  +    P
Sbjct: 503 SLKHGQRCHSHLIKLGLNTDPFVA------------GALLDMYGKRGNINESQRVFNETP 550

Query: 581 LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRR 634
            K T   W  ++ A   HG+ E      K + E E  N  +   LS L +  R+
Sbjct: 551 EK-TQFSWTGMISAYARHGDYESVMSLYKEI-EREGSNLDSITFLSVLAACCRK 602


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 202/625 (32%), Positives = 334/625 (53%), Gaps = 14/625 (2%)

Query: 49  LRSSLVRAYGHVSN---VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           LR++L+ AY  +      R L DEM  R++  +N ++  Y++ G +  SL+      R G
Sbjct: 45  LRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAG 104

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
             + D ++Y   + AC+     + G A+H   ++ G     FV N L++MY   GE+  A
Sbjct: 105 -VDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEA 163

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           R+VFD   E   VSWN+L+SGY +    +E + VF  M + G+  +  ++ SV+  C   
Sbjct: 164 RRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGR 223

Query: 226 KE--IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
            +  +++   +H  V    L  ++   +A++DMY K G++ EA  +F  + E +VV + +
Sbjct: 224 GDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNT 283

Query: 284 MINGYALNGDV------RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
           MI G+     V        AL L+  +Q  G++P   T  S+L AC+   YL+ G+ +H 
Sbjct: 284 MIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHG 343

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
             IK   + +  + +ALID+Y     ++  F+ F  + K   V W A+++GCV N L  K
Sbjct: 344 QVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEK 403

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
           A+ LF + L   ++P+  T++S++ A A LA  +    I C+  + GF     +    + 
Sbjct: 404 ALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVH 463

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
           +Y++ G +++A + F E+  +  D+V WS +I+ +  HG    A+  F EMV + V PNE
Sbjct: 464 MYARSGDVDAATRRFQEM--ESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNE 521

Query: 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIR 577
           +TF   L ACSHGGL+DEGL  +  M +++       H TC+VDLLGRAGRL +A   I 
Sbjct: 522 ITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFIS 581

Query: 578 TMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKD 637
                    +W +LL +C IH ++E G++ A  + ELEP +  +YV+L  +Y        
Sbjct: 582 NSIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSL 641

Query: 638 AENVRDVMDEKGLRKAPAHSLIEVR 662
           A   RD+M ++G++K P  S IE++
Sbjct: 642 ASKTRDLMKQRGVKKEPGLSWIELK 666


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 210/595 (35%), Positives = 317/595 (53%), Gaps = 40/595 (6%)

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAM--YMNFGEVK 163
           E   +  T PI+I  C +   +K    LH  +L TG   D      L       +   + 
Sbjct: 25  EQKSNPSTVPILIDKCAN---KKHLKQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLD 81

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML-KSGVEPDCASVVSVLPAC 222
            A KVFD +   ++ +WNTLI  +  +    + L+VF  ML +S   P+  +   V+ A 
Sbjct: 82  YACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAA 141

Query: 223 GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
             +  +  G+ IH +V     G ++   N+L+  Y   G ++ A LVF ++ E+D+V+W 
Sbjct: 142 TEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWN 201

Query: 283 SMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           SMI+G+   G    AL LF+ M+ E  RPN +T+  +LSAC+    L+ GR    +  + 
Sbjct: 202 SMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERN 261

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW-------------------- 382
            ++  +I+  A++DMY KC  ++ + ++F +  +K  V W                    
Sbjct: 262 GIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVF 321

Query: 383 -----------NAILAGCVHNGLARKAVELFRQM-LVEVVEPNDATLNSLLPAYAILADL 430
                      NA+++    NG  ++A+ +FR++ L +  +PN+ TL S L A A L  +
Sbjct: 322 DVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAM 381

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
                IH Y+ + G      ++T LID+YSKCG LE A ++F  +  + +D+ VWS +IA
Sbjct: 382 DLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSV--ERRDVFVWSAMIA 439

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           G  MHGHG  A+ LF +M ++ V+PN VTFT+ L ACSH GL+DEG   FN M   +   
Sbjct: 440 GLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVV 499

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
             + HY C+VD+LGRAG L+EA +LI  MP+ P+ +VWGALLGAC I+GNVEL E+A   
Sbjct: 500 PGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSR 559

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           L E +  N G YVLLS +Y+   +W     +R  M   GL K P  S IEV  I+
Sbjct: 560 LLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGII 614



 Score =  255 bits (651), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 153/509 (30%), Positives = 267/509 (52%), Gaps = 42/509 (8%)

Query: 33  KQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRIL------FDEMSERSSFLYNTVMKMYA 86
           KQLHA ++ +G  F    ++ +     +S+   L      FD++   + + +NT+++ +A
Sbjct: 47  KQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFA 106

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
            +      L +F+ ML   +  P++YT+P VIKA T+++    G A+HG V+   F  D 
Sbjct: 107 SSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDL 166

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
           F+ N LI  Y + G++ +A  VF  + E  +VSWN++ISG+ +    +EAL +F  M   
Sbjct: 167 FISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKME 226

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
              P+  ++V VL AC    ++E GR   + +    +  N+   NA++DMYVKCGS+ +A
Sbjct: 227 NARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDA 286

Query: 267 RLVFDRMSERDVVTWTSMINGYA-------------------------------LNGDVR 295
           R +FD+M E+D+V+WT+MI+GYA                                NG  +
Sbjct: 287 RRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPK 346

Query: 296 NALGLFQLMQF-EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
            AL +F+ +Q  +  +PN +T+ S L+AC+ L  +  G  +H +  KQ ++    + T+L
Sbjct: 347 EALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSL 406

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           IDMY+KC  ++ + +VF    ++    W+A++AG   +G  R A++LF +M    V+PN 
Sbjct: 407 IDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNA 466

Query: 415 ATLNSLLPA--YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
            T  +LL A  ++ L D +  +  +     YG +   +    ++DI  + G LE A ++ 
Sbjct: 467 VTFTNLLCACSHSGLVD-EGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELI 525

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
            ++PI      VW  ++    ++G+ E A
Sbjct: 526 EKMPIV-PSASVWGALLGACRIYGNVELA 553


>gi|297842209|ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334827|gb|EFH65245.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 717

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 203/633 (32%), Positives = 344/633 (54%), Gaps = 14/633 (2%)

Query: 33  KQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           K + A +I  G     + +S+V  Y   GH++  R +F  +S  S   +  ++  Y ++ 
Sbjct: 93  KVVQARVIKCGAEDVFVCTSIVDLYAKCGHMAEAREVFSRISNPSVVSWTVMLSGYTKSN 152

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
            +  +L++F  M   G    ++ T   VI AC   +       +H  V  +GF +DT V 
Sbjct: 153 DAFSALEIFREMRHSG-VEINSCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDTSVA 211

Query: 150 NCLIAMYMNFGEVKAARKVF---DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
             LI+M    G++  + +VF   D +   ++V  N +++ + +N    +A+ +F  ML+ 
Sbjct: 212 AALISMNSKSGDINLSERVFEDLDDIRRQNIV--NVMVTSFSQNKKPGKAIRLFTRMLQE 269

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           G+ PD  SV S+L     L  + +G+ +H       L  ++   ++L  MY KCGS+ E+
Sbjct: 270 GLNPDEFSVCSLLSV---LDCLNLGKQVHSYTLKSGLILDLTVGSSLFTMYSKCGSLEES 326

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
             +F  +  +D   W SMI+G+   G +R A+GLF  M  EG  P+  T+ ++L+ CSSL
Sbjct: 327 YSLFQEIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDEGTSPDESTLAAVLTVCSSL 386

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             L R + +H +T++  ++  + + +AL++ Y+KC  +KL+ +V+ R  +   V  ++++
Sbjct: 387 PSLPRSKEIHGYTLRAGIDRGMPLGSALVNTYSKCGSLKLARKVYDRLPEMDPVSCSSLI 446

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           +G   +GL +    LFR M++     +   ++S+L A  +  + +    +H Y+ + G  
Sbjct: 447 SGYSQHGLVQDGFLLFRDMVMSGFSMDSYAISSILKAAVLSEESELGAQVHAYITKIGLC 506

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           +   V + L+ +YSK GS+E   K FS+I     D++ W+ +IA Y  HG    A+ ++ 
Sbjct: 507 TEPSVGSSLLTMYSKFGSIEDCCKAFSQI--NGPDLIAWTALIASYAQHGKANEALQVYC 564

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
            M + G +P++VTF   L ACSHGGL++EG    N M++++       HY C+VD LGR+
Sbjct: 565 LMKEKGFKPDKVTFVGVLSACSHGGLVEEGYFHLNSMVKDYGIEPENRHYVCMVDALGRS 624

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           GRL EA + I T P+KP   VWG LL AC I+G+VELG++AAK   ELEP + G YV LS
Sbjct: 625 GRLREAENFINTRPIKPDALVWGTLLAACKIYGDVELGKLAAKKAIELEPSDAGAYVSLS 684

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
            + + V  W + E  R +M   G++K P  S +
Sbjct: 685 NILAEVGEWDEVEETRKLMKGTGVQKEPGWSSV 717



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 180/636 (28%), Positives = 301/636 (47%), Gaps = 56/636 (8%)

Query: 49  LRSSLVRAYGHVSNVRI-----LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR 103
           ++SSL+ A+    N+R      +F +    + + +NT++    +N        +F  M  
Sbjct: 9   VQSSLIDAFSK--NLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCN 66

Query: 104 LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163
            G   PD+YTY  V+ AC  L   + G  +  RV+  G + D FV   ++ +Y   G + 
Sbjct: 67  -GFQKPDSYTYSSVLAACASLEELRFGKVVQARVIKCGAE-DVFVCTSIVDLYAKCGHMA 124

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
            AR+VF  +   SVVSW  ++SGY K+  A  AL +F  M  SGVE +  +V SV+ ACG
Sbjct: 125 EAREVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACG 184

Query: 224 YLKEIEMGRMIHELV--AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-RDVVT 280
               +     +H  V  +G  L  ++AA  AL+ M  K G +N +  VF+ + + R    
Sbjct: 185 RPSMVCEASQVHAWVFKSGFYLDTSVAA--ALISMNSKSGDINLSERVFEDLDDIRRQNI 242

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
              M+  ++ N     A+ LF  M  EG+ P+  ++ SLLS    L  L  G+ +H++T+
Sbjct: 243 VNVMVTSFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLLSV---LDCLNLGKQVHSYTL 299

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
           K  L  ++ V ++L  MY+KC  ++ S+ +F     K    W ++++G    G  R+A+ 
Sbjct: 300 KSGLILDLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIG 359

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
           LF +ML E   P+++TL ++L   + L  L ++  IH Y +R G    + + + L++ YS
Sbjct: 360 LFSEMLDEGTSPDESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGIDRGMPLGSALVNTYS 419

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           KCGSL+ A K++  +P  + D V  S +I+GY  HG  +    LF++MV SG   +    
Sbjct: 420 KCGSLKLARKVYDRLP--EMDPVSCSSLISGYSQHGLVQDGFLLFRDMVMSGFSMDSYAI 477

Query: 521 TSALHA----------------------CSHGGLLDEGLDLFNFMLENHQTCSRADH--- 555
           +S L A                      C+   +    L +++        C        
Sbjct: 478 SSILKAAVLSEESELGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIEDCCKAFSQING 537

Query: 556 -----YTCIVDLLGRAGRLDEA---YDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVA 607
                +T ++    + G+ +EA   Y L++    KP    +  +L AC   G VE G   
Sbjct: 538 PDLIAWTALIASYAQHGKANEALQVYCLMKEKGFKPDKVTFVGVLSACSHGGLVEEGYFH 597

Query: 608 AKWL---FELEPENPGNYVLLSKLYSAVRRWKDAEN 640
              +   + +EPEN  +YV +        R ++AEN
Sbjct: 598 LNSMVKDYGIEPENR-HYVCMVDALGRSGRLREAEN 632



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 132/411 (32%), Positives = 208/411 (50%), Gaps = 20/411 (4%)

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           G+     V + LI  +      + A KVF      +V  WNT+I+G  +N        +F
Sbjct: 2   GYFFYEVVQSSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLF 61

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG-KNIAAWNALVDMYVK 259
             M     +PD  +  SVL AC  L+E+  G+++   V   + G +++    ++VD+Y K
Sbjct: 62  HEMCNGFQKPDSYTYSSVLAACASLEELRFGKVVQARVI--KCGAEDVFVCTSIVDLYAK 119

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
           CG + EAR VF R+S   VV+WT M++GY  + D  +AL +F+ M+  GV  NS T+ S+
Sbjct: 120 CGHMAEAREVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSV 179

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK-KK 378
           +SAC     +     +HAW  K     +  V  ALI M +K   + LS +VF      ++
Sbjct: 180 ISACGRPSMVCEASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRR 239

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
               N ++     N    KA+ LF +ML E + P++ ++ SLL   ++L  L     +H 
Sbjct: 240 QNIVNVMVTSFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLL---SVLDCLNLGKQVHS 296

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           Y ++ G +  + V + L  +YSKCGSLE ++ +F EIP KD     W+ +I+G+  +G+ 
Sbjct: 297 YTLKSGLILDLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDN--ACWASMISGFNEYGYL 354

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGGLLDEGLD 538
             A+ LF EM+  G  P+E T  + L  CS           HG  L  G+D
Sbjct: 355 REAIGLFSEMLDEGTSPDESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGID 405


>gi|302816163|ref|XP_002989761.1| hypothetical protein SELMODRAFT_20442 [Selaginella moellendorffii]
 gi|300142538|gb|EFJ09238.1| hypothetical protein SELMODRAFT_20442 [Selaginella moellendorffii]
          Length = 749

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 225/668 (33%), Positives = 340/668 (50%), Gaps = 85/668 (12%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN-PDNYTYPIVIKACTDL 124
           +F  M  R+   +NT++   AQ G      K+FL   R+ +++ PD  T+  ++  C+ L
Sbjct: 88  IFHAMPGRNVVSWNTMVSANAQEG-DFSRAKIFLA--RIPQHSLPDGITFVTILTGCSHL 144

Query: 125 AWRKLG-----------------------IALHGR----------VLITGFDMDTFVGNC 151
                G                       + + GR          +  TG D +T + N 
Sbjct: 145 GLVSRGREFFRSIESAFGMKPGVEHYCCMVDVLGRAKHLEEAEELIFKTGHDRETRLRNL 204

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG--VE 209
           LI MY   G +  ARKVFD   + ++ SWN +++ Y  N ++ EALV+   M  SG  V 
Sbjct: 205 LIQMYGECGSLIDARKVFDRTPDPNIFSWNIMLAAYAHNGHSNEALVLSQRMKDSGATVV 264

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PD  + V +L AC  L  +  GRMIH  V    +  N+    A+V+MY KCGS+ +A++V
Sbjct: 265 PDRVTYVILLHACSNLGALREGRMIHASVIVSGMESNVVVATAIVNMYGKCGSMGDAKMV 324

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           FD+M  +DV+ W SMI+ YALNG  ++AL L+  M+   VRP++ T  + L ACS L  L
Sbjct: 325 FDKMPAKDVICWNSMISAYALNGLGKSALDLYARMRHSCVRPDAGTFVAALDACSVLNSL 384

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           + G+ +HA      LE  V+V TAL+ MY KC  ++ S  VF     +  + W A+L   
Sbjct: 385 EDGKKIHAAISASKLEWNVMVATALVSMYGKCGCLERSIAVFRAMEVRNLISWTAMLGAL 444

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI-------- 441
            HNG    A+ELF +M  E  E      N+L+ AY      ++A+ ++  +I        
Sbjct: 445 AHNGRDAAALELFARMRDEGREA--LLWNALIAAYTARGHPREALRLYAEMILAERRGAP 502

Query: 442 -----RYGFLSVVE------------------------------VSTGLIDIYSKCGSLE 466
                R  F +V+E                              V++ LI +YSKCGSL 
Sbjct: 503 PVRPDRNTFAAVLEACGSIGTAALGEGRMIHTQAIARACDTDVIVASALIAMYSKCGSLG 562

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
            A  IF E+  K + +V+ + +IA YG HG  E A+ LF EM Q G++PN +TF S L +
Sbjct: 563 DAVAIFRELSRK-RSVVLVTTMIAAYGHHGKLELALELFWEMAQRGLKPNRITFVSLLSS 621

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           CS    L E +  F  M+ +      A+HY  ++DLLGR+G++ +A +LI +MP  P   
Sbjct: 622 CSAANSLREAVFYFQIMIHDCDIQPGAEHYHFVIDLLGRSGKVAQAEELINSMPFAPGCG 681

Query: 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646
            W +LL AC  H  VELG  AA  +FE+EP+N   Y++L K+Y A   W +   ++ +M+
Sbjct: 682 AWMSLLAACERHSKVELGRRAADRVFEMEPKNALAYLMLGKIYVAAGMWDELLQLKKLME 741

Query: 647 EKGLRKAP 654
           ++GL++ P
Sbjct: 742 DRGLKREP 749



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 149/538 (27%), Positives = 244/538 (45%), Gaps = 86/538 (15%)

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           + F  N LIA Y + G ++ A K+F AM   +VVSWNT++S   +      A +    + 
Sbjct: 65  NVFSFNILIASYASAGLLEEAWKIFHAMPGRNVVSWNTMVSANAQEGDFSRAKIFLARIP 124

Query: 205 KSGVEPDCASVVSVLPACGYL----------KEIE------------------MGRMIH- 235
           +  + PD  + V++L  C +L          + IE                  +GR  H 
Sbjct: 125 QHSL-PDGITFVTILTGCSHLGLVSRGREFFRSIESAFGMKPGVEHYCCMVDVLGRAKHL 183

Query: 236 ----ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
               EL+      +     N L+ MY +CGS+ +AR VFDR  + ++ +W  M+  YA N
Sbjct: 184 EEAEELIFKTGHDRETRLRNLLIQMYGECGSLIDARKVFDRTPDPNIFSWNIMLAAYAHN 243

Query: 292 GDVRNALGLFQLMQFEG--VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
           G    AL L Q M+  G  V P+ +T   LL ACS+L  L+ GR +HA  I   +E  V+
Sbjct: 244 GHSNEALVLSQRMKDSGATVVPDRVTYVILLHACSNLGALREGRMIHASVIVSGMESNVV 303

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           V TA+++MY KC  +  +  VF +   K  + WN++++    NGL + A++L+ +M    
Sbjct: 304 VATAIVNMYGKCGSMGDAKMVFDKMPAKDVICWNSMISAYALNGLGKSALDLYARMRHSC 363

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           V P+  T  + L A ++L  L+    IH  +        V V+T L+ +Y KCG LE + 
Sbjct: 364 VRPDAGTFVAALDACSVLNSLEDGKKIHAAISASKLEWNVMVATALVSMYGKCGCLERSI 423

Query: 470 KIFSEIPIKD-------------------------------KDIVVWSVIIAGYGMHGHG 498
            +F  + +++                               ++ ++W+ +IA Y   GH 
Sbjct: 424 AVFRAMEVRNLISWTAMLGALAHNGRDAAALELFARMRDEGREALLWNALIAAYTARGHP 483

Query: 499 ETAVSLFKEMVQS------GVQPNEVTFTSALHACSHGGL--LDEGLDLFNFMLENHQTC 550
             A+ L+ EM+ +       V+P+  TF + L AC   G   L EG       + + Q  
Sbjct: 484 REALRLYAEMILAERRGAPPVRPDRNTFAAVLEACGSIGTAALGEG------RMIHTQAI 537

Query: 551 SRADHYTCIV-----DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
           +RA     IV      +  + G L +A  + R +  K +  +   ++ A   HG +EL
Sbjct: 538 ARACDTDVIVASALIAMYSKCGSLGDAVAIFRELSRKRSVVLVTTMIAAYGHHGKLEL 595



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 129/459 (28%), Positives = 214/459 (46%), Gaps = 85/459 (18%)

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAG--GRLGKNIAAWNALVDMYVKCGSVNEARLVFD- 271
           + ++L +CG   ++  GR IH+ V     + G+++   N ++DMY KCG + EAR VFD 
Sbjct: 1   LANLLRSCGNSGDLSAGRRIHKRVLDLQRQHGQDVFLLNLVIDMYGKCGGLGEARAVFDA 60

Query: 272 ------------------------------RMSERDVVTWTSMINGYALNGDVRNALGLF 301
                                          M  R+VV+W +M++  A  GD   A  +F
Sbjct: 61  IEHPNVFSFNILIASYASAGLLEEAWKIFHAMPGRNVVSWNTMVSANAQEGDFSRA-KIF 119

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL-----HAWTIKQNLE--C-------- 346
                +   P+ +T  ++L+ CS L  + RGR        A+ +K  +E  C        
Sbjct: 120 LARIPQHSLPDGITFVTILTGCSHLGLVSRGREFFRSIESAFGMKPGVEHYCCMVDVLGR 179

Query: 347 --------EVIVETA----------LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
                   E+I +T           LI MY +C  +  + +VF RT       WN +LA 
Sbjct: 180 AKHLEEAEELIFKTGHDRETRLRNLLIQMYGECGSLIDARKVFDRTPDPNIFSWNIMLAA 239

Query: 389 CVHNGLARKAVELFRQMLVE--VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
             HNG + +A+ L ++M      V P+  T   LL A + L  L++   IH  +I  G  
Sbjct: 240 YAHNGHSNEALVLSQRMKDSGATVVPDRVTYVILLHACSNLGALREGRMIHASVIVSGME 299

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           S V V+T ++++Y KCGS+  A  +F ++P   KD++ W+ +I+ Y ++G G++A+ L+ 
Sbjct: 300 SNVVVATAIVNMYGKCGSMGDAKMVFDKMPA--KDVICWNSMISAYALNGLGKSALDLYA 357

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH------YTCIV 560
            M  S V+P+  TF +AL ACS    L++G  +       H   S +         T +V
Sbjct: 358 RMRHSCVRPDAGTFVAALDACSVLNSLEDGKKI-------HAAISASKLEWNVMVATALV 410

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            + G+ G L+ +  + R M ++   + W A+LGA   +G
Sbjct: 411 SMYGKCGCLERSIAVFRAMEVRNLIS-WTAMLGALAHNG 448


>gi|357116106|ref|XP_003559825.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Brachypodium distachyon]
          Length = 739

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 228/673 (33%), Positives = 345/673 (51%), Gaps = 37/673 (5%)

Query: 5   SHHTL---PKTTHLVIKLVQQYAA------TKSIAGTKQLHAFIITSG-PLFTHLRSSLV 54
           +HH L   P+ T  +  L    AA      +   A    LH   I SG   F+ + +SL 
Sbjct: 20  AHHLLDRIPRPTSTLPLLASSPAAFTAAVPSSVPANLPALHGLAIASGLDAFSFVTNSLA 79

Query: 55  RAYGHVSN----VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPD 110
             Y   ++       +F     R    YNT++      G   ++L     MLR G+  PD
Sbjct: 80  ARYAKSASSFPSAAKVFHTARARDVSSYNTILSALPDRG---EALAFAAWMLRSGDVRPD 136

Query: 111 NYTYPIVI-----KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
             T  + +     +   D  W  +   LH     +G   D FVGN L+  Y     + AA
Sbjct: 137 AVTLTVALSLAASRGEADGVW--IVRQLHALASRSGLVADVFVGNALVTAYSRGALLGAA 194

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNA-YAKEALVVFDWMLKSG---VEPDCASVVSVLPA 221
           R+VFD M    +VSWN +I G  ++     E ++VF  +LK G   V PD  SV SV+PA
Sbjct: 195 RRVFDEMPARDLVSWNAMICGLAQDGDCPTEVILVFLRLLKDGGAAVRPDRISVCSVIPA 254

Query: 222 CGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTW 281
           CG   +IE+GR +H       +   ++  N LV MY K G+   AR +   M ERDV++W
Sbjct: 255 CGSEGKIELGRQVHSFTVKLGVEGKVSIGNVLVAMYYKSGAAGCARKLLKSMDERDVISW 314

Query: 282 TSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
           T+ I+   ++G+  +A+ LF  M+ +GV PN +T  +L+SA ++    + G+ +H   +K
Sbjct: 315 TTAIS---MDGE-EDAIELFNGMRQDGVPPNEVTFVALMSALAAGCPARYGQMIHTVCLK 370

Query: 342 QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVEL 401
             +  E     +LI MYAK   +  +  VF R  + + + WNA+++G   N L  +A+++
Sbjct: 371 TGVSDEAAAANSLITMYAKLRRMDDARTVFDRMPRPEIIAWNALISGYAQNELCNEALQV 430

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN--IHCYLIRYGFLSVVEVSTGLIDIY 459
           F  M V  + PN+ T  S+L A   +  +  A     HC  ++ G      VS  LID+Y
Sbjct: 431 FSCM-VRCLRPNETTFASVLSAVTAVETVSMAYGEMYHCQSLKLGLKVSEYVSGALIDMY 489

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
           +K GSLE + K F ++ +  + ++ W+ II+ +  HG+ +T ++LF +MV SGV P+ V 
Sbjct: 490 AKRGSLEESRKAF-DVTVH-RSLIAWTAIISAHAKHGNYDTVMNLFDDMVCSGVAPDGVV 547

Query: 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
             S L AC H G ++ G ++F+ M   H      +HY C++D+LGRAGRL+EA +L+  M
Sbjct: 548 LLSVLTACRHSGAVNTGREIFDSMPAEHHVEPWPEHYACVIDMLGRAGRLEEAEELMLQM 607

Query: 580 PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAE 639
           P  P+ +   +LLGAC IHGN  + E  A  L E EP   G YVLLS +Y+    W    
Sbjct: 608 PTGPSVSALQSLLGACRIHGNTSIAERVAGILTETEPTESGAYVLLSNIYAEKGDWGGVA 667

Query: 640 NVRDVMDEKGLRK 652
            VR  M EKG+RK
Sbjct: 668 KVRREMREKGVRK 680


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 198/608 (32%), Positives = 321/608 (52%), Gaps = 12/608 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +   + LF     R++  +  +M+ +A  G + D+L +F  ML  G   PD  T   V
Sbjct: 88  GDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI-PDRVTVTTV 146

Query: 118 IK--ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           +    CT         +LH   +  G D   FV N L+  Y   G + AAR+VF  M + 
Sbjct: 147 LNLPGCT-------VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDK 199

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
             V++N ++ G  K     +AL +F  M ++G+     +  S+L     +  + +G  +H
Sbjct: 200 DAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVH 259

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
            LV       N+   N+L+D Y KC  +++ R +FD M ERD V++  +I  YA N    
Sbjct: 260 ALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAA 319

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
             L LF+ MQ  G     L   ++LS   SL  +  G+ +HA  +   L  E ++  ALI
Sbjct: 320 TVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALI 379

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           DMY+KC ++  +   F+  S+K  + W A++ G V NG   +A++LF  M    + P+ A
Sbjct: 380 DMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRA 439

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           T +S++ A + LA +     +H YLIR G+ S V   + L+D+Y+KCG L+ A + F E+
Sbjct: 440 TFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEM 499

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
           P  +++ + W+ +I+ Y  +G  + A+ +F+ M+  G  P+ VTF S L ACSH GL DE
Sbjct: 500 P--ERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADE 557

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
            +  F+ M   +      +HY C++D LGR G   +   ++  MP K    +W ++L +C
Sbjct: 558 CMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSC 617

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
            IHGN EL  VAA  LF +EP +   YV+LS +Y+   +W+DA  V+ +M ++G+RK   
Sbjct: 618 RIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESG 677

Query: 656 HSLIEVRN 663
           +S +E++ 
Sbjct: 678 YSWVEIKQ 685



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 143/282 (50%), Gaps = 11/282 (3%)

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
           KNI + N ++  Y   G +  A+ +F     R+  TWT M+  +A  G   +AL LF+ M
Sbjct: 72  KNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAM 131

Query: 305 QFEGVRPNSLTIGSLLS--ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
             EGV P+ +T+ ++L+   C+         SLH + IK  L+  V V   L+D Y K  
Sbjct: 132 LGEGVIPDRVTVTTVLNLPGCTV-------PSLHPFAIKFGLDTHVFVCNTLLDAYCKHG 184

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
           L+  + +VF     K  V +NA++ GC   GL  +A++LF  M    +     T +S+L 
Sbjct: 185 LLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILT 244

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
             A +A L     +H  ++R   +  V V+  L+D YSKC  L+   ++F E+P  ++D 
Sbjct: 245 VAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMP--ERDN 302

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           V ++VIIA Y  +    T + LF+EM + G     + + + L
Sbjct: 303 VSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATML 344


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 216/639 (33%), Positives = 345/639 (53%), Gaps = 17/639 (2%)

Query: 33  KQLHAFIITSGPLF-THLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQN 88
           +QLH   I  G L    + +SLV  Y   SN    R +FDEM ER+   + T++  YA+N
Sbjct: 113 RQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARN 172

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
             + + L +F+ M   G   P+++T+   +    +      G+ +H  V+  G D    V
Sbjct: 173 SMNDEVLTLFMRMQNEGT-QPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 231

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N LI +Y+  G V+ AR +FD     SVV+WN++ISGY  N    EAL +F  M  + V
Sbjct: 232 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV 291

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVA--GGRLGKNIAAWNALVDMYVKCGSVNEA 266
               +S  SV+  C  LKE+     +H  V   G    +NI    AL+  Y KC ++ +A
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRT--ALMVAYSKCTAMLDA 349

Query: 267 RLVFDRMS-ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
             +F  +    +VV+WT+MI+G+  N     A+ LF  M+ +GVRPN  T   +L+A   
Sbjct: 350 LRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPV 409

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           +        +HA  +K N E    V TAL+D Y K   V+ + +VF+    K  V W+A+
Sbjct: 410 I----SPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAM 465

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL-ADLQQAMNIHCYLIRYG 444
           LAG    G    A+++F ++    ++PN+ T +S+L   A   A + Q    H + I+  
Sbjct: 466 LAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSR 525

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
             S + VS+ L+ +Y+K G++ESA ++F     ++KD+V W+ +I+GY  HG    A+ +
Sbjct: 526 LDSSLCVSSALLTMYAKKGNIESAEEVFKRQ--REKDLVSWNSMISGYAQHGQAMKALDV 583

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           FKEM +  V+ + VTF     AC+H GL++EG   F+ M+ + +     +H +C+VDL  
Sbjct: 584 FKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYS 643

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
           RAG+L++A  +I  MP      +W  +L AC +H   ELG +AA+ +  ++PE+   YVL
Sbjct: 644 RAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVL 703

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           LS +Y+    W++   VR +M+E+ ++K P +S IEV+N
Sbjct: 704 LSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKN 742



 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 175/558 (31%), Positives = 287/558 (51%), Gaps = 30/558 (5%)

Query: 57  YGHVSNVRI-----LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           +G VS+ R+     LFD+   R    Y +++  ++++G + ++ ++FL + RLG    D 
Sbjct: 35  FGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLG-MEMDC 93

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
             +  V+K    L     G  LH + +  GF  D  VG  L+  YM     K  RKVFD 
Sbjct: 94  SIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDE 153

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M E +VV+W TLISGY +N+   E L +F  M   G +P+  +  + L   G L E  +G
Sbjct: 154 MKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAAL---GVLAEEGVG 210

Query: 232 R---MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
                +H +V    L K I   N+L+++Y+KCG+V +AR++FD+   + VVTW SMI+GY
Sbjct: 211 GRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGY 270

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
           A NG    ALG+F  M+   VR +  +  S++  C++L  L+    LH   +K     + 
Sbjct: 271 AANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQ 330

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
            + TAL+  Y+KC  +  + ++F         V W A+++G + N    +AV+LF +M  
Sbjct: 331 NIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKR 390

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           + V PN+ T + +L A  +++  +    +H  +++  +     V T L+D Y K G +E 
Sbjct: 391 KGVRPNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVEE 446

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A K+FS   I DKDIV WS ++AGY   G  E A+ +F E+ + G++PNE TF+S L+ C
Sbjct: 447 AAKVFS--GIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVC 504

Query: 528 -SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL----GRAGRLDEAYDLIRTMPLK 582
            +    + +G     F ++     SR D   C+   L     + G ++ A ++ +    K
Sbjct: 505 AATNASMGQGKQFHGFAIK-----SRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREK 559

Query: 583 PTHAVWGALLGACVIHGN 600
                W +++     HG 
Sbjct: 560 DL-VSWNSMISGYAQHGQ 576



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 230/450 (51%), Gaps = 14/450 (3%)

Query: 159 FGEVKAAR-----KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCA 213
           FG V ++R      +FD        S+ +L+ G+ ++   +EA  +F  + + G+E DC+
Sbjct: 35  FGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCS 94

Query: 214 SVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR 272
              SVL     L +   GR +H + +  G L  +++   +LVD Y+K  +  + R VFD 
Sbjct: 95  IFSSVLKVSATLCDELFGRQLHCQCIKFGFL-DDVSVGTSLVDTYMKGSNFKDGRKVFDE 153

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
           M ER+VVTWT++I+GYA N      L LF  MQ EG +PNS T  + L   +      RG
Sbjct: 154 MKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRG 213

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
             +H   +K  L+  + V  +LI++Y KC  V+ +  +F +T  K  V WN++++G   N
Sbjct: 214 LQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAAN 273

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
           GL  +A+ +F  M +  V  ++++  S++   A L +L+    +HC +++YGFL    + 
Sbjct: 274 GLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIR 333

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
           T L+  YSKC ++  A ++F EI     ++V W+ +I+G+  +   E AV LF EM + G
Sbjct: 334 TALMVAYSKCTAMLDALRLFKEIGCVG-NVVSWTAMISGFLQNDGKEEAVDLFSEMKRKG 392

Query: 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572
           V+PNE T++  L A       +    +     E   T       T ++D   + G+++EA
Sbjct: 393 VRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVG-----TALLDAYVKLGKVEEA 447

Query: 573 YDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
             +   +  K   A W A+L      G  E
Sbjct: 448 AKVFSGIDDKDIVA-WSAMLAGYAQTGETE 476



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 217/437 (49%), Gaps = 31/437 (7%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAYGHVS---NVRILFDEMS 71
           VIKL    A  K +  T+QLH  ++  G LF  ++R++L+ AY   +   +   LF E+ 
Sbjct: 301 VIKLC---ANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIG 357

Query: 72  ERSSFLYNTVM-KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
              + +  T M   + QN    +++ +F  M R G   P+ +TY +++ A   ++  +  
Sbjct: 358 CVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKG-VRPNEFTYSVILTALPVISPSE-- 414

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
             +H +V+ T ++  + VG  L+  Y+  G+V+ A KVF  + +  +V+W+ +++GY + 
Sbjct: 415 --VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQT 472

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK-EIEMGRMIHELVAGGRLGKNIAA 249
              + A+ +F  + K G++P+  +  S+L  C      +  G+  H      RL  ++  
Sbjct: 473 GETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCV 532

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
            +AL+ MY K G++  A  VF R  E+D+V+W SMI+GYA +G    AL +F+ M+   V
Sbjct: 533 SSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKV 592

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV----ETALIDMYAKCNLVK 365
           + + +T   + +AC+    ++ G       ++   +C++       + ++D+Y++   ++
Sbjct: 593 KMDGVTFIGVFAACTHAGLVEEGEKYFDIMVR---DCKIAPTKEHNSCMVDLYSRAGQLE 649

Query: 366 LSFQVFAR-TSKKKTVPWNAILAGC-VHNGLARKAVELFRQMLVEVV--EPNDATLNSLL 421
            + +V     +   +  W  ILA C VH     K  EL R    +++  +P D+    LL
Sbjct: 650 KAMKVIENMPNPAGSTIWRTILAACRVH-----KKTELGRLAAEKIIAMKPEDSAAYVLL 704

Query: 422 P-AYAILADLQQAMNIH 437
              YA   D Q+   + 
Sbjct: 705 SNMYAESGDWQERAKVR 721


>gi|125603224|gb|EAZ42549.1| hypothetical protein OsJ_27115 [Oryza sativa Japonica Group]
          Length = 696

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 225/647 (34%), Positives = 339/647 (52%), Gaps = 27/647 (4%)

Query: 34  QLHAFIITSGPLFTHLRSSLVRAYGHVS-----NVRILFDEMSERSSFLYNTVMKMYAQN 88
           + +A    SG   T   + L+ AY   S       R +FDE+  R    +N ++   A +
Sbjct: 12  RFNACFPKSGSCATTPWNQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQAAS 71

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           GA  ++ ++   M   G    + +     +++        +G  L    L +G   + F 
Sbjct: 72  GAHPEAWRLLRAMHAQG-LASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFA 130

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            + L+ +Y   G V+ AR+VFD M E + VSWN LI+GY ++     AL +F  M + G+
Sbjct: 131 ASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMEREGL 190

Query: 209 EPDCASVVSVL-----PACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
            PD A+  S+L     P+C  + ++  G+++     G  LG  +   NA +  Y +CGS+
Sbjct: 191 APDEATFASLLTAVEGPSCFLMHQLH-GKIVK---YGSALG--LTVLNAAITAYSQCGSL 244

Query: 264 NEARLVFDRMSE-RDVVTWTSMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLS 321
            ++R +FD + + RD+++W +M+  Y  NG    A+  F ++MQ  GV P+  +  S++S
Sbjct: 245 KDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIIS 304

Query: 322 ACSSLYYLK-RGRSLHAWTIKQNLECEVIVETALIDMYAKCN---LVKLSFQVFARTSKK 377
           +CS   +   +GR +H   IK  LE    V  ALI MY + N   +++ +++ F     K
Sbjct: 305 SCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMMEDAYKCFNSLVLK 364

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
            TV WN++L G   +GL+  A++ FR M  E V  ++   ++ L + + LA LQ    IH
Sbjct: 365 DTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIH 424

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV-WSVIIAGYGMHG 496
             +I  GF S   VS+ LI +YSK G ++ A K F E    DK   V W+ +I GY  HG
Sbjct: 425 GLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEE---ADKSSSVPWNAMIFGYAQHG 481

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
             E    LF EM+Q     + +TF   + +CSH GL+DEG ++ N M   +    R +HY
Sbjct: 482 QAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRMEHY 541

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
            C VDL GRAG+LD+A  LI +MP +P   VW  LLGAC IHGNVEL    A  LF  EP
Sbjct: 542 ACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVAEP 601

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
                YVLLS +YS +  W D   V+ VM ++GL K P  S IEV+N
Sbjct: 602 RQHSTYVLLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSWIEVKN 648


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 191/530 (36%), Positives = 304/530 (57%), Gaps = 3/530 (0%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H +++ +G   +TF+ N L+  Y+  G +  A+++F      +VVSW  LISG  KN  
Sbjct: 43  IHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDC 102

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
             EA+ VF  M     +P+  ++ SVLPA   L  I + + +H     G    N+    A
Sbjct: 103 FVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETA 162

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           LVDMY K G +  AR +F+ MSER+VV+W ++++GY+ +G    A+ LF LM+ +G+  +
Sbjct: 163 LVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVD 222

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
             TI SL+ A  S+  L+ G  +H + I+   E +  ++TAL+D+Y   N V  + +VF+
Sbjct: 223 FYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFS 282

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQML-VEVVEPNDATLNSLLPAYAILADLQ 431
               K    W  +L G        +A++ F +ML ++ ++ +   L  +L + +    LQ
Sbjct: 283 EMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQ 342

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           Q   +H   I+  F + + V + +ID+Y+ CG+LE A + F    + +KD+V W+ +IAG
Sbjct: 343 QGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFF--YGMGEKDVVCWNAMIAG 400

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
            GM+G+G  A+ LF +M  SG+ P+E TF S L+ACSH G++ EGL +F  M++      
Sbjct: 401 NGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIP 460

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
              HY C++D+LGRAG+LD AY  I  MP +P   V+  LLGAC IHGN++LG   ++ +
Sbjct: 461 NLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKI 520

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           FE+EP + G YVLLS +Y+    W+  +  R  +  K L+K P  S IE+
Sbjct: 521 FEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEI 570



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 140/524 (26%), Positives = 279/524 (53%), Gaps = 14/524 (2%)

Query: 7   HTLPKTTHLVIKLVQQYAAT----KSIAGTKQLHAFIITSGPLF-THLRSSLVRAY---G 58
           H     T  +  L Q +A+     K +   +Q+HA IITSG    T L +SL+ AY   G
Sbjct: 11  HLSSNPTQRLCPLAQSHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCG 70

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
            +++ + +F     ++   +  ++   A+N    +++ +F  M  +G + P+  T   V+
Sbjct: 71  LLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREM-TMGNFKPNAVTISSVL 129

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
            A  +L   ++  ++H   +  GF+ + FV   L+ MY  FG +  AR++F++M E +VV
Sbjct: 130 PAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVV 189

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           SWN ++SGY  + +++EA+ +F+ M + G+  D  +++S++PA   +  +++G  IH  +
Sbjct: 190 SWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFI 249

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
                  +     AL+D+YV    V++A  VF  M  +DV  WT M+ G++       A+
Sbjct: 250 IRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAI 309

Query: 299 GLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
             F +++  + ++ +S+ +  +LS+CS    L++GR +HA  IK      + V +A+IDM
Sbjct: 310 KHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDM 369

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YA C  ++ + + F    +K  V WNA++AG   NG    A++LF QM    ++P+++T 
Sbjct: 370 YANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTF 429

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGF-LSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
            S+L A +    + + + I  ++++    +  ++    +IDI  + G L++A+   + +P
Sbjct: 430 VSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMP 489

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
            +  D  V+S ++    +HG+ +    + +++ +  ++PN+  +
Sbjct: 490 FQ-PDFDVYSTLLGACRIHGNIKLGHEISQKIFE--MEPNDAGY 530



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 218/413 (52%), Gaps = 18/413 (4%)

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           LK+++  + IH  +    L  N    N+L++ YV CG + +A+ +F     ++VV+WT +
Sbjct: 34  LKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTIL 93

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           I+G A N     A+ +F+ M     +PN++TI S+L A ++L  ++  +S+H + ++   
Sbjct: 94  ISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGF 153

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
           E  V VETAL+DMY+K   + ++ Q+F   S++  V WNAI++G   +G + +A++LF  
Sbjct: 154 EGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNL 213

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           M  + +  +  T+ SL+PA   +  LQ    IH ++IR G+ +   + T L+DIY     
Sbjct: 214 MRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNC 273

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP---NEVTFT 521
           ++ AH++FSE+ +  KD+  W++++ G+    H + A+  F +M+  G+Q    + +   
Sbjct: 274 VDDAHRVFSEMFV--KDVAAWTLMLTGFSSGRHWDRAIKHFNKML--GIQNLKLDSIVLM 329

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTM 579
             L +CSH G L +G  +    +   +TC   + +  + ++D+    G L++A      M
Sbjct: 330 GILSSCSHSGALQQGRRVHALAI---KTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGM 386

Query: 580 PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE--NPGNYVLLSKLYS 630
             K     W A++    ++G    G  A     +++    +P     +S LY+
Sbjct: 387 GEKDV-VCWNAMIAGNGMNG---YGTDAIDLFLQMKGSGLDPDESTFVSVLYA 435


>gi|449455116|ref|XP_004145299.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 722

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 201/671 (29%), Positives = 357/671 (53%), Gaps = 6/671 (0%)

Query: 1   MNGPSHHTLPKT-THLVIKLVQQYAATKSIAGTKQLHA-FIITSGPLFTHLRSSLVRAY- 57
           ++ P     P T + L+  L   ++   SI   +Q+HA FI+        L S L+  Y 
Sbjct: 11  IHSPIFLNFPATQSRLLNTLSLLFSRCNSIQHLQQIHARFILHGFHQNPTLSSKLIDCYA 70

Query: 58  --GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
             G +++   +F  + + +  L+N +++   + G S  +L ++  M+     +PD  TYP
Sbjct: 71  NLGLLNHSLQVFCSVIDPNLTLFNAILRNLTRYGESERTLLVYQQMVA-KSMHPDEETYP 129

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
            V+++C+  +    G  +HG ++  GFD+   V   L  MY    E + A ++FD     
Sbjct: 130 FVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIEFENAHQLFDKRSVK 189

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
            +   ++L +   +N   +    VF  M+   + PD  +  ++L     L  I++ +++H
Sbjct: 190 DLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNSIQLAKIVH 249

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
            +    +L  ++    A++ +Y K  S+ +AR +FD+M E+D V W  MI  YA  G   
Sbjct: 250 CIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAAYAREGKPT 309

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
             L LF+ M   G+R +  T   ++S+ + L  +  G+  HA  ++   + +V V  +LI
Sbjct: 310 ECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQVSVHNSLI 369

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           DMY +C ++  + ++F   + K  + W+A++ G V NG +  A+ LF +M  + ++ +  
Sbjct: 370 DMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKSDGIQADFV 429

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
            + ++LPA+  +  L+    +H Y ++ G  S+  ++T L+  Y+KCGS+E A ++F E 
Sbjct: 430 IMINILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEMAQRLFEEE 489

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
            I DKD+++W+ +I+ +  HG       L+  M  S  +P++VTF   L AC + GL+++
Sbjct: 490 KIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTACVNSGLVEK 549

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           G + F  M E++      +HY C+V+LLGRAG + EA +L++ MP+KP   VWG LL AC
Sbjct: 550 GKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDARVWGPLLSAC 609

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
            +H   +L E AA+ L  +EP N GNY+LLS +Y+A  +W     +R  +  KGL+K P 
Sbjct: 610 KMHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRNKGLKKIPG 669

Query: 656 HSLIEVRNILT 666
            S +E+   +T
Sbjct: 670 CSWLEINGHVT 680


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  355 bits (912), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 198/608 (32%), Positives = 321/608 (52%), Gaps = 12/608 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +   + LF     R++  +  +M+ +A  G + D+L +F  ML  G   PD  T   V
Sbjct: 88  GDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVI-PDRVTVTTV 146

Query: 118 IK--ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           +    CT         +LH   +  G D   FV N L+  Y   G + AAR+VF  M + 
Sbjct: 147 LNLPGCT-------VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDK 199

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
             V++N ++ G  K     +AL +F  M ++G+     +  S+L     +  + +G  +H
Sbjct: 200 DAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVH 259

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
            LV       N+   N+L+D Y KC  +++ R +FD M ERD V++  +I  YA N    
Sbjct: 260 ALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAA 319

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
             L LF+ MQ  G     L   ++LS   SL  +  G+ +HA  +   L  E ++  ALI
Sbjct: 320 TVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALI 379

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           DMY+KC ++  +   F+  S+K  + W A++ G V NG   +A++LF  M    + P+ A
Sbjct: 380 DMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRA 439

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           T +S++ A + LA +     +H YLIR G+ S V   + L+D+Y+KCG L+ A + F E+
Sbjct: 440 TFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEM 499

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
           P  +++ + W+ +I+ Y  +G  + A+ +F+ M+  G  P+ VTF S L ACSH GL DE
Sbjct: 500 P--ERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADE 557

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
            +  F+ M   +      +HY C++D LGR G   +   ++  MP K    +W ++L +C
Sbjct: 558 CMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSC 617

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
            IHGN EL  VAA  LF +EP +   YV+LS +Y+   +W+DA  V+ +M ++G+RK   
Sbjct: 618 RIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESG 677

Query: 656 HSLIEVRN 663
           +S +E++ 
Sbjct: 678 YSWVEIKQ 685



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 143/282 (50%), Gaps = 11/282 (3%)

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
           KNI + N ++  Y   G +  A+ +F     R+  TWT M+  +A  G   +AL LF+ M
Sbjct: 72  KNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAM 131

Query: 305 QFEGVRPNSLTIGSLLS--ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
             EGV P+ +T+ ++L+   C+         SLH + IK  L+  V V   L+D Y K  
Sbjct: 132 LGEGVIPDRVTVTTVLNLPGCTV-------PSLHPFAIKFGLDTHVFVCNTLLDAYCKHG 184

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
           L+  + +VF     K  V +NA++ GC   GL  +A++LF  M    +     T +S+L 
Sbjct: 185 LLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILT 244

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
             A +A L     +H  ++R   +  V V+  L+D YSKC  L+   ++F E+P  ++D 
Sbjct: 245 VAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMP--ERDN 302

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           V ++VIIA Y  +    T + LF+EM + G     + + + L
Sbjct: 303 VSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATML 344


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  355 bits (912), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 197/536 (36%), Positives = 301/536 (56%), Gaps = 9/536 (1%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G+ LH  ++  GF  DT + N LI MY   G++  A +VFD M E +VVSW  L+ G+  
Sbjct: 23  GVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLH 82

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-VAGGRLGKNIA 248
           +  A+E L +F  M  SG  P+  ++ + L ACG       G  IH + V  G  G ++ 
Sbjct: 83  HGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQIHGVCVRTGFEGHDVV 140

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE- 307
           A N+LV MY K     +AR VFD +  R++ TW SMI+GYA  G  R++L +F+ MQ   
Sbjct: 141 A-NSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRH 199

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE--CEVIVETALIDMYAKCNLVK 365
             +P+  T  SLL ACS L   + G  +HA    + +      I+  AL+D+Y KC+ + 
Sbjct: 200 DEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLP 259

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
           ++ QVF    ++  + W  ++ G    G  ++A+ LFR+     V  +   L+S++  +A
Sbjct: 260 VAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFA 319

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
             A ++Q   +HCY  +      V V+  L+D+Y KCG    A + F E+P ++  +V W
Sbjct: 320 DFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARN--VVSW 377

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I G G HGHG  A+ LF+EM + GV+ +EV + + L ACSH GL+DE    F+ + +
Sbjct: 378 TAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQ 437

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
           + +   +A+HY C+VDLLGRAG L EA +LI +MP++PT  VW  LL AC +H +V +G 
Sbjct: 438 DRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGR 497

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
                L  ++ +NP NYV+LS + +    W++ + +R  M  KGLRK    S  EV
Sbjct: 498 EVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCSWTEV 553



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 135/491 (27%), Positives = 245/491 (49%), Gaps = 16/491 (3%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNVRI---LFDEM 70
           ++  L++  A   S+ G  QLHA ++  G    T L ++L+  Y     + +   +FD M
Sbjct: 6   MIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGM 65

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
            ER+   +  +M  +  +G + + L++F G +R    +P+ +T    +KAC      + G
Sbjct: 66  PERNVVSWTALMVGFLHHGEARECLRLF-GEMRGSGTSPNEFTLSATLKACG--GGTRAG 122

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           + +HG  + TGF+    V N L+ MY        AR+VFD +   ++ +WN++ISGY   
Sbjct: 123 VQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHA 182

Query: 191 AYAKEALVVFDWMLKSGVE-PDCASVVSVLPACGYLKEIEMGRMIHELVA--GGRLGKNI 247
              +++L+VF  M +   E PD  +  S+L AC  L     G  +H  +A  G     N 
Sbjct: 183 GQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNA 242

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
               AL+D+YVKC  +  A  VFD +  R+ + WT++I G+A  G V+ A+ LF+     
Sbjct: 243 ILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSS 302

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           GVR +   + S+++  +    +++G+ +H +T K     +V V  +L+DMY KC L   +
Sbjct: 303 GVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEA 362

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA-- 425
            + F     +  V W A++ G   +G  R+A++LF +M  E VE ++    +LL A +  
Sbjct: 363 GRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACSHS 422

Query: 426 -ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
            ++ + ++  +  C   R       E    ++D+  + G L  A ++   +P+ +  + V
Sbjct: 423 GLVDECRRYFSRICQDRR--MRPKAEHYACMVDLLGRAGELREAKELILSMPM-EPTVGV 479

Query: 485 WSVIIAGYGMH 495
           W  +++   +H
Sbjct: 480 WQTLLSACRVH 490



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 188/407 (46%), Gaps = 12/407 (2%)

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           +  +L A      +  G  +H  +     G +    N L+DMY KCG ++ A  VFD M 
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 66

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
           ER+VV+WT+++ G+  +G+ R  L LF  M+  G  PN  T+ + L AC      + G  
Sbjct: 67  ERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGG--GTRAGVQ 124

Query: 335 LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
           +H   ++   E   +V  +L+ MY+K      + +VF     +    WN++++G  H G 
Sbjct: 125 IHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQ 184

Query: 395 ARKAVELFRQMLVEVVE-PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF--LSVVEV 451
            R ++ +FR+M     E P++ T  SLL A + L   ++   +H  +   G    S   +
Sbjct: 185 GRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAIL 244

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
           +  L+D+Y KC  L  A ++F    ++ ++ + W+ +I G+   G  + A+ LF+    S
Sbjct: 245 AGALLDVYVKCHRLPVAMQVFD--GLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSS 302

Query: 512 GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571
           GV+ +    +S +   +   L+++G  +  +  +             +VD+  + G   E
Sbjct: 303 GVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLD-VSVANSLVDMYLKCGLTGE 361

Query: 572 AYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
           A    R MP +     W A++     HG+   G  A     E++ E 
Sbjct: 362 AGRRFREMPARNV-VSWTAMINGVGKHGH---GREAIDLFEEMQEEG 404



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 109/231 (47%), Gaps = 3/231 (1%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD +  R++  + TV+  +AQ G   +++ +F      G    D +    V+    D A
Sbjct: 264 VFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSG-VRADGHVLSSVVAVFADFA 322

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             + G  +H     T   +D  V N L+ MY+  G    A + F  M   +VVSW  +I+
Sbjct: 323 LVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMIN 382

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI-EMGRMIHELVAGGRLG 244
           G  K+ + +EA+ +F+ M + GVE D  + +++L AC +   + E  R    +    R+ 
Sbjct: 383 GVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMR 442

Query: 245 KNIAAWNALVDMYVKCGSVNEAR-LVFDRMSERDVVTWTSMINGYALNGDV 294
                +  +VD+  + G + EA+ L+     E  V  W ++++   ++ DV
Sbjct: 443 PKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDV 493


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  355 bits (912), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 198/496 (39%), Positives = 294/496 (59%), Gaps = 11/496 (2%)

Query: 176  SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
            +V SWN++I+   +   + EAL  F  + K G+ P  +S    + +C  L ++  GRM H
Sbjct: 1979 NVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSH 2038

Query: 236  ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
            +         ++   +AL+DMY KCG + +AR +FD +  R+VV+WTSMI GY  N    
Sbjct: 2039 QQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQAD 2098

Query: 296  NALGLFQLMQFE--------GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
            NAL LF+    E         V  +S+ + S+LSACS +        +H + +K+  +  
Sbjct: 2099 NALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGS 2158

Query: 348  VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
            + V   L+D YAKC    +S +VF    +K  + WN+++A    +GL+ +A+E+F  M+ 
Sbjct: 2159 IGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVR 2218

Query: 408  EV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
             V V  N  TL+++L A A    L+    IH  +I+      V V T +ID+Y KCG +E
Sbjct: 2219 HVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVE 2278

Query: 467  SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
             A K F  +  K+K++  W+ ++AGYGMHG  + A+ +F +MV++GV+PN +TF S L A
Sbjct: 2279 MAKKTFDRM--KEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAA 2336

Query: 527  CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
            CSH GL++EG   FN M   +      +HY C+VDL GRAG L+EAY+LI+ M +KP   
Sbjct: 2337 CSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFV 2396

Query: 587  VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646
            VWG+LLGAC IH NV+LGE+AA+ LFEL+P+N G YVLLS LY+   RW D E +R +M 
Sbjct: 2397 VWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMK 2456

Query: 647  EKGLRKAPAHSLIEVR 662
             + L K P  SL+E++
Sbjct: 2457 NRQLVKPPGFSLVELK 2472



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 145/449 (32%), Positives = 238/449 (53%), Gaps = 25/449 (5%)

Query: 78   YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
            +N+V+   A+ G S ++L+ F  + +LG   P   ++P  IK+C+ L     G   H + 
Sbjct: 1983 WNSVIADLARGGDSVEALRAFSSLRKLGLI-PTRSSFPCTIKSCSALCDLVSGRMSHQQA 2041

Query: 138  LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
             + GF+ D FV + LI MY   G++K AR +FD +   +VVSW ++I+GY +N  A  AL
Sbjct: 2042 FVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNAL 2101

Query: 198  VVFDWMLKSGVE-------P-DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
            ++F   L+   E       P D   +VSVL AC  +    +   +H  V       +I  
Sbjct: 2102 LLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGV 2161

Query: 250  WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ-LMQFEG 308
             N L+D Y KCG    ++ VFD M E+D ++W SMI  YA +G    AL +F  +++  G
Sbjct: 2162 GNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVG 2221

Query: 309  VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
            VR N++T+ ++L AC+    L+ G+ +H   IK +LE  V V T++IDMY KC  V+++ 
Sbjct: 2222 VRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAK 2281

Query: 369  QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
            + F R  +K    W A++AG   +G A++A+++F +M+   V+PN  T  S+L A +   
Sbjct: 2282 KTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAG 2341

Query: 429  DLQQ------AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
             +++      AM  H Y I  G    +E    ++D++ + G L  A+ +   + +K  D 
Sbjct: 2342 LVEEGWHWFNAMK-HKYDIEPG----IEHYGCMVDLFGRAGCLNEAYNLIKRMKMK-PDF 2395

Query: 483  VVWSVIIAGYGMHGH---GETAVSLFKEM 508
            VVW  ++    +H +   GE A     E+
Sbjct: 2396 VVWGSLLGACRIHKNVDLGEIAAQKLFEL 2424



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 186/352 (52%), Gaps = 13/352 (3%)

Query: 51   SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
            S+L+  Y   G + + R LFDE+  R+   + +++  Y QN  + ++L +F   L     
Sbjct: 2054 SALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETE 2113

Query: 108  NPDNYTYPI-------VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG 160
              D    P+       V+ AC+ ++ + +   +HG V+  GFD    VGN L+  Y   G
Sbjct: 2114 VEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCG 2173

Query: 161  EVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS-GVEPDCASVVSVL 219
            +   ++KVFD M E   +SWN++I+ Y ++  + EAL VF  M++  GV  +  ++ +VL
Sbjct: 2174 QPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVL 2233

Query: 220  PACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVV 279
             AC +   +  G+ IH+ V    L  N+    +++DMY KCG V  A+  FDRM E++V 
Sbjct: 2234 LACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVK 2293

Query: 280  TWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG-RSLHAW 338
            +WT+M+ GY ++G  + AL +F  M   GV+PN +T  S+L+ACS    ++ G    +A 
Sbjct: 2294 SWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAM 2353

Query: 339  TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGC 389
              K ++E  +     ++D++ +   +  ++ +  R   K   V W ++L  C
Sbjct: 2354 KHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGAC 2405



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 180/387 (46%), Gaps = 36/387 (9%)

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           +L  C   K +   R IH  +    L  +      L+ +Y   G +  A L+F ++    
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
             TW  +I    +NG    AL L++ M  +G+  +  T   ++ AC++   +  G+ +H 
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR------------------------ 373
             IK     +V V+  LID Y KC   + + +VF +                        
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQE 209

Query: 374 -------TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
                     K  V W A++ G + N    +A+ELF++M  E + PN+ T+ SL+ A   
Sbjct: 210 ARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTE 269

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           +  L     IH Y I+      V + T LID+YSKCGS++ A ++F  +P   K +  W+
Sbjct: 270 MGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMP--RKSLPTWN 327

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            +I   G+HG G+ A++LF EM +  V+P+ +TF   L AC H   + EG   F  M ++
Sbjct: 328 SMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQH 387

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAY 573
           +      +HY C+ +L  R+  LDEA+
Sbjct: 388 YGIAPIPEHYECMTELYARSNNLDEAF 414



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 185/375 (49%), Gaps = 32/375 (8%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H +++ +G   D  +   LI +Y   G +  A  +F  +      +WN +I     N  
Sbjct: 46  IHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGL 105

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLG------- 244
           +++AL+++  M+  G+  D  +   V+ AC     I++G+++H  L+  G  G       
Sbjct: 106 SEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNN 165

Query: 245 -----------------------KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTW 281
                                  +N+ +W  ++   + CG + EAR +FD +  ++VV+W
Sbjct: 166 LIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSW 225

Query: 282 TSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
           T+MINGY  N     AL LF+ MQ E + PN  T+ SL+ AC+ +  L  GR +H + IK
Sbjct: 226 TAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK 285

Query: 342 QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVEL 401
             +E  V + TALIDMY+KC  +K + +VF    +K    WN+++     +GL ++A+ L
Sbjct: 286 NCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNL 345

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYS 460
           F +M    V+P+  T   +L A   + ++++       + + YG   + E    + ++Y+
Sbjct: 346 FSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYA 405

Query: 461 KCGSLESAHKIFSEI 475
           +  +L+ A K   E+
Sbjct: 406 RSNNLDEAFKSTKEV 420



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 188/386 (48%), Gaps = 51/386 (13%)

Query: 27  KSIAGTKQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVM 82
           K+    +Q+HA II SG     L T     L   +G ++   +LF ++    +F +N ++
Sbjct: 38  KNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLII 97

Query: 83  KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
           +    NG S  +L ++  M+  G    D +T+P VIKACT+     LG  +HG ++  GF
Sbjct: 98  RANTINGLSEQALMLYKNMVCQG-IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGF 156

Query: 143 DMDTFVGNCLIAMY-------------------------------MNFGEVKAARKVFDA 171
             D FV N LI  Y                               ++ G+++ AR++FD 
Sbjct: 157 SGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDE 216

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           +   +VVSW  +I+GY +N   +EAL +F  M    + P+  ++VS++ AC  +  + +G
Sbjct: 217 IPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG 276

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           R IH+      +   +    AL+DMY KCGS+ +A  VF+ M  + + TW SMI    ++
Sbjct: 277 RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVH 336

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG-----RSLHAW---TIKQN 343
           G  + AL LF  M+   V+P+++T   +L AC  +  +K G     R    +    I ++
Sbjct: 337 GLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEH 396

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQ 369
            EC       + ++YA+ N +  +F+
Sbjct: 397 YEC-------MTELYARSNNLDEAFK 415



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 183/398 (45%), Gaps = 47/398 (11%)

Query: 264  NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
            N A   +  + + +V +W S+I   A  GD   AL  F  ++  G+ P   +    + +C
Sbjct: 1966 NLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSC 2025

Query: 324  SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
            S+L  L  GR  H        E ++ V +ALIDMY+KC  +K +  +F     +  V W 
Sbjct: 2026 SALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWT 2085

Query: 384  AILAGCVHNGLARKAVELFRQMLVEVVEPNDAT--------LNSLLPAYAILADLQQAMN 435
            +++ G V N  A  A+ LF+  L E  E  D          + S+L A + ++       
Sbjct: 2086 SMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG 2145

Query: 436  IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
            +H ++++ GF   + V   L+D Y+KCG    + K+F    +++KD + W+ +IA Y   
Sbjct: 2146 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDW--MEEKDDISWNSMIAVYAQS 2203

Query: 496  GHGETAVSLFKEMVQS-GVQPNEVTFTSALHACSHGGLLDEG---------LDL-FNF-- 542
            G    A+ +F  MV+  GV+ N VT ++ L AC+H G L  G         +DL +N   
Sbjct: 2204 GLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCV 2263

Query: 543  ---MLENHQTCSRAD---------------HYTCIVDLLGRAGRLDEAYDLIRTM---PL 581
               +++ +  C R +                +T +V   G  GR  EA D+   M    +
Sbjct: 2264 GTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGV 2323

Query: 582  KPTHAVWGALLGACVIHGNVELG---EVAAKWLFELEP 616
            KP +  + ++L AC   G VE G     A K  +++EP
Sbjct: 2324 KPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEP 2361



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 151/335 (45%), Gaps = 49/335 (14%)

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           LL  C +  +L   R +HA  I+  L  + ++   LI +Y+    +  +  +F +     
Sbjct: 33  LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
           T  WN I+     NGL+ +A+ L++ M+ + +  +  T   ++ A      +     +H 
Sbjct: 90  TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHG 149

Query: 439 YLIRYGFLSVVEVSTGLIDIYSK-------------------------------CGSLES 467
            LI+YGF   V V   LID Y K                               CG L+ 
Sbjct: 150 SLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQE 209

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A +IF EIP   K++V W+ +I GY  +   E A+ LFK M    + PNE T  S + AC
Sbjct: 210 ARRIFDEIP--SKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKAC 267

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLK--P 583
           +  G+L  G  + ++ ++N   C     Y  T ++D+  + G + +A ++  TMP K  P
Sbjct: 268 TEMGILTLGRGIHDYAIKN---CIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLP 324

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
           T   W +++ +  +HG   LG+ A     E+E  N
Sbjct: 325 T---WNSMITSLGVHG---LGQEALNLFSEMERVN 353



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 149/285 (52%), Gaps = 9/285 (3%)

Query: 19   LVQQYAATKSIAG---TKQLHAFIITSG-PLFTHLRSSLVRAYGHVSN---VRILFDEMS 71
            +V   +A   ++G   T+ +H F++  G      + ++L+ AY         + +FD M 
Sbjct: 2127 MVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWME 2186

Query: 72   ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
            E+    +N+++ +YAQ+G S ++L++F GM+R      +  T   V+ AC      + G 
Sbjct: 2187 EKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGK 2246

Query: 132  ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
             +H +V+    + +  VG  +I MY   G V+ A+K FD M E +V SW  +++GY  + 
Sbjct: 2247 CIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHG 2306

Query: 192  YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAAW 250
             AKEAL +F  M+++GV+P+  + VSVL AC +   +E G    + +     +   I  +
Sbjct: 2307 RAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHY 2366

Query: 251  NALVDMYVKCGSVNEARLVFDRMSER-DVVTWTSMINGYALNGDV 294
              +VD++ + G +NEA  +  RM  + D V W S++    ++ +V
Sbjct: 2367 GCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNV 2411


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 194/603 (32%), Positives = 340/603 (56%), Gaps = 16/603 (2%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD M +++   + +++  +   G   D++ +F  ML L   +PD  T+  ++     L 
Sbjct: 72  VFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKML-LSGVSPDRITFTSIL-----LK 125

Query: 126 W----RKL--GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           W    R L  G  +H  ++ TG++ D  V N ++ MY   G+V+ A  VFD++ + +V S
Sbjct: 126 WSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFS 185

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE-LV 238
           W  +I+ Y +N +  E L +   M ++GV+PD  +  +VL AC  +  +E  +++H   +
Sbjct: 186 WTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATI 245

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
           +   L ++ A   AL+++Y KCG++ EA  VF ++  +D+V+W+SMI  +A +G  ++A+
Sbjct: 246 SSTGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAI 305

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
            L  LM  EGVRPN++T  ++L A +SL   + G+ +HA  ++     +V + +AL+ MY
Sbjct: 306 QLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMY 365

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
                V+ +  +F  + ++  V W++++AG   N    +A+ LFR+M V+ V+PN  T  
Sbjct: 366 CNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFV 425

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           S + A A +  L++   +H  +   G    V V+T L+++Y KCG LE A  +F  + +K
Sbjct: 426 SAIDACAGVGALRRGTQLHERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVF--LGMK 483

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
            K+++ W+ I   YG +GHG  ++ L   M   G++P+ + F + L +C++ G + +GL 
Sbjct: 484 KKNLLTWTSIAMAYGQNGHGSRSLKLLHGMELQGMKPDGIVFVAILVSCNYAGQMSKGLH 543

Query: 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
            +N M ++       +H  C+VD+LGRAG+L+ A  LI TM  + + A W  LL AC  H
Sbjct: 544 YYNLMTQDFGIAPAVEHCGCMVDILGRAGKLEAAEQLINTMKFESSLA-WMMLLTACKAH 602

Query: 599 GNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSL 658
            +      AA+ +F+LEP+N   YVLLS ++ A   W+ AE  R  MD +G+++    S 
Sbjct: 603 NDTARAARAAEKIFQLEPKNATPYVLLSSVFCAAGSWEAAEETRRRMDGRGVQRLLGRSS 662

Query: 659 IEV 661
           IE+
Sbjct: 663 IEI 665



 Score =  256 bits (653), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 172/527 (32%), Positives = 270/527 (51%), Gaps = 24/527 (4%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMD-----TFVGNCLIAMYMNFGEVKAARKVFDA 171
           ++ AC+DL     G  +HG V+      D     + + N +I MY+  G    A  VFD 
Sbjct: 16  ILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFDR 75

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPA-CGYLKEIEM 230
           M + +VV+W +LIS +    +  +A+V+F  ML SGV PD  +  S+L    G  + ++ 
Sbjct: 76  MKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDE 135

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
           G+ +H  +       +    N +V+MY KCG V +A  VFD + + +V +WT +I  YA 
Sbjct: 136 GKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQ 195

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN-LECEVI 349
           NG     L L   M   GV+P+  T  ++L AC+++  L+  + LHA TI    L+ +  
Sbjct: 196 NGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAA 255

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           V TALI++Y KC  ++ +F VF +   K  V W++++A    +G A+ A++L   M +E 
Sbjct: 256 VGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEG 315

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           V PN+ T  ++L A   L   Q    IH  +++ G+   V +++ L+ +Y   G +E+A 
Sbjct: 316 VRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETAR 375

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
            IF     +++D+V WS +IAGY  +     A+SLF+EM   GVQPN VTF SA+ AC+ 
Sbjct: 376 SIFE--SSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAG 433

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADH----YTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
            G L  G  L   +      C   D      T +V+L G+ GRL+EA  +   M  K   
Sbjct: 434 VGALRRGTQLHERV-----RCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMK-KKNL 487

Query: 586 AVWGALLGACVIHGNVELGEVAAKWL--FELEPENPGNYVLLSKLYS 630
             W ++  A   +G    G  + K L   EL+   P   V ++ L S
Sbjct: 488 LTWTSIAMA---YGQNGHGSRSLKLLHGMELQGMKPDGIVFVAILVS 531



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 140/493 (28%), Positives = 249/493 (50%), Gaps = 11/493 (2%)

Query: 33  KQLHAFIITSGPLFTHLRSSLV-RAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQN 88
           K++H+ I+ +G     +  +LV   YG   +V     +FD + + + F +  ++  YAQN
Sbjct: 137 KRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQN 196

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLI-TGFDMDTF 147
           G   + L++   M + G   PD YT+  V+ ACT +   +    LH   +  TG D D  
Sbjct: 197 GHCMEVLRLLSRMNQAG-VKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAA 255

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           VG  LI +Y   G ++ A  VF  +    +VSW+++I+ + ++  AK A+ +   M   G
Sbjct: 256 VGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEG 315

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           V P+  + V+VL A   LK  + G+ IH  +       ++   +ALV MY   G V  AR
Sbjct: 316 VRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETAR 375

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +F+   ERDVV+W+SMI GY+ N     AL LF+ M+ +GV+PNS+T  S + AC+ + 
Sbjct: 376 SIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVG 435

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L+RG  LH       L+ +V V TAL+++Y KC  ++ +  VF    KK  + W +I  
Sbjct: 436 ALRRGTQLHERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAM 495

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFL 446
               NG   ++++L   M ++ ++P+     ++L +      + + ++ +  + + +G  
Sbjct: 496 AYGQNGHGSRSLKLLHGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIA 555

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
             VE    ++DI  + G LE+A ++ + +  +    + W +++     H     A    +
Sbjct: 556 PAVEHCGCMVDILGRAGKLEAAEQLINTMKFESS--LAWMMLLTACKAHNDTARAARAAE 613

Query: 507 EMVQSGVQPNEVT 519
           ++ Q  ++P   T
Sbjct: 614 KIFQ--LEPKNAT 624



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 169/328 (51%), Gaps = 9/328 (2%)

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA-----WNALVDMYVKCGS 262
           ++ + ++  ++L AC  L+ +  G+ +H LV    L ++         N ++ MY++CG 
Sbjct: 6   IQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGC 65

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
            + A  VFDRM +++VV WTS+I+ +   G   +A+ LF+ M   GV P+ +T  S+L  
Sbjct: 66  TDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLK 125

Query: 323 CSSLYY-LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
            S     L  G+ +H+  ++   E + +V   +++MY KC  V+ +  VF          
Sbjct: 126 WSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFS 185

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           W  I+A    NG   + + L  +M    V+P+  T  ++L A   +  L++A  +H   I
Sbjct: 186 WTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATI 245

Query: 442 -RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
              G      V T LI++Y KCG+LE A  +F  + I +KDIV WS +IA +   G  ++
Sbjct: 246 SSTGLDRDAAVGTALINLYGKCGALEEAFGVF--VQIDNKDIVSWSSMIAAFAQSGQAKS 303

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACS 528
           A+ L   M   GV+PN VTF + L A +
Sbjct: 304 AIQLLMLMDLEGVRPNNVTFVNVLEAVT 331


>gi|302773325|ref|XP_002970080.1| hypothetical protein SELMODRAFT_171135 [Selaginella moellendorffii]
 gi|300162591|gb|EFJ29204.1| hypothetical protein SELMODRAFT_171135 [Selaginella moellendorffii]
          Length = 829

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 206/615 (33%), Positives = 328/615 (53%), Gaps = 12/615 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G VS+ R  FD M  R+   ++ ++  YAQ G   D+L++F+ M   G    +  T+  V
Sbjct: 91  GSVSHARRAFDAMVVRNVVSWSAMIAAYAQRGHPGDALELFVRMDHEG-VKANAITFVSV 149

Query: 118 IKACTDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           + AC  +    LG ++H R++  G    D  +GN ++ MY   GEV  AR+VF+ M   +
Sbjct: 150 LDACASMRAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFERMEAKN 209

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
            V+WNT+I+   ++   KEA  +   M   G+ P+  ++VSV+ AC +++ I  GR++HE
Sbjct: 210 AVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAWMQSIVRGRIVHE 269

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
           +VAG  L  +    NALV++Y KCG +  AR   + +  RD ++WT+++  YA +G  + 
Sbjct: 270 IVAGEGLESDNTVANALVNLYGKCGKLRAARHALEGIETRDKISWTTLLAAYARHGHGKR 329

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A+ + + M  EGV+ +S T  +LL +C ++  L  G  +H    +  +E + +++TAL+D
Sbjct: 330 AIAVIKRMDHEGVKLDSFTFVNLLESCVAIAALALGEEIHDRLAESGIELDPVLQTALVD 389

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVP-WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           MY KC     + + F R S  + V  WNA+LA  V     ++ + +F +M ++ V P+  
Sbjct: 390 MYGKCGNPDAARRAFDRMSDVRDVTVWNALLAAYVLRDQGKETLGIFARMSLQGVAPDAV 449

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEV------STGLIDIYSKCGSLESAH 469
           T  S+L A A LA L      H  ++  G      V      +T +I++Y+KCGSL  A 
Sbjct: 450 TFLSILDACASLAALGLGRLTHSRMLERGLFDRQAVASADLLTTSVINMYAKCGSLADAK 509

Query: 470 KIFSEI-PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
             F++    +  D+V WS ++A Y   G  E A+  F  M Q GV+P+ V+F SA+  CS
Sbjct: 510 AEFAKARRARASDVVAWSAMVAAYSQFGLSEEALRCFYSMQQEGVKPDSVSFVSAIAGCS 569

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           H GL+ E +  F  +  +H       H+ C+VDLL RAG + EA  L+R  PL   H+ W
Sbjct: 570 HSGLVREAVAFFTSLRHDHGIAPTEAHFACLVDLLSRAGWIREAEALMRRAPLGAHHSTW 629

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
             LL AC  +G++E     A  L  L   +   Y LL+ ++   R+W D  N R  + E+
Sbjct: 630 MTLLSACRTYGDLERARRVAARLASLRSGSA--YSLLASVFCLSRKWDDVRNARQSLVER 687

Query: 649 GLRKAPAHSLIEVRN 663
           G    P  S IE+ N
Sbjct: 688 GFITQPGCSWIEINN 702



 Score =  265 bits (677), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 167/557 (29%), Positives = 281/557 (50%), Gaps = 14/557 (2%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           M++RS F +N  +  YA+NG    +L++F  M   G   PD  +   ++ A   L     
Sbjct: 1   MADRSPFSWNLAIAEYARNGHHARALEIFRAMALEG-VAPDRVSCIAILDAFASLGDLSQ 59

Query: 130 GIALHGRVL-ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
           G   H  V   +G   D  V   ++ MY   G V  AR+ FDAM   +VVSW+ +I+ Y 
Sbjct: 60  GEFFHRTVCEASGLGSDVVVATAVLTMYNRCGSVSHARRAFDAMVVRNVVSWSAMIAAYA 119

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE-LVAGGRLGKNI 247
           +  +  +AL +F  M   GV+ +  + VSVL AC  ++ I +G+ IHE +VA G LG ++
Sbjct: 120 QRGHPGDALELFVRMDHEGVKANAITFVSVLDACASMRAIALGKSIHERIVADGLLGDDV 179

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
              N +V+MY KCG V+ AR VF+RM  ++ VTW +MI   + +   + A  L   M  +
Sbjct: 180 ILGNTIVNMYGKCGEVDLAREVFERMEAKNAVTWNTMIAACSRHDRYKEAFALLGEMDLD 239

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           G+RPN +T+ S++ AC+ +  + RGR +H     + LE +  V  AL+++Y KC  ++ +
Sbjct: 240 GLRPNKITLVSVIDACAWMQSIVRGRIVHEIVAGEGLESDNTVANALVNLYGKCGKLRAA 299

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
                    +  + W  +LA    +G  ++A+ + ++M  E V+ +  T  +LL +   +
Sbjct: 300 RHALEGIETRDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAI 359

Query: 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
           A L     IH  L   G      + T L+D+Y KCG+ ++A + F  +    +D+ VW+ 
Sbjct: 360 AALALGEEIHDRLAESGIELDPVLQTALVDMYGKCGNPDAARRAFDRMS-DVRDVTVWNA 418

Query: 488 IIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE-- 545
           ++A Y +   G+  + +F  M   GV P+ VTF S L AC+    L  G    + MLE  
Sbjct: 419 LLAAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACASLAALGLGRLTHSRMLERG 478

Query: 546 --NHQTCSRADHYTC-IVDLLGRAGRL-DEAYDLIRTMPLKPTHAV-WGALLGACVIHGN 600
             + Q  + AD  T  ++++  + G L D   +  +    + +  V W A++ A   +  
Sbjct: 479 LFDRQAVASADLLTTSVINMYAKCGSLADAKAEFAKARRARASDVVAWSAMVAA---YSQ 535

Query: 601 VELGEVAAKWLFELEPE 617
             L E A +  + ++ E
Sbjct: 536 FGLSEEALRCFYSMQQE 552



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 127/463 (27%), Positives = 216/463 (46%), Gaps = 41/463 (8%)

Query: 56  AYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG-------------------------- 89
           A G   + RI+ D +      L NT++ MY + G                          
Sbjct: 160 ALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFERMEAKNAVTWNTMIAA 219

Query: 90  -ASHDSLK---MFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
            + HD  K     LG + L    P+  T   VI AC  +     G  +H  V   G + D
Sbjct: 220 CSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAWMQSIVRGRIVHEIVAGEGLESD 279

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
             V N L+ +Y   G+++AAR   + +     +SW TL++ Y ++ + K A+ V   M  
Sbjct: 280 NTVANALVNLYGKCGKLRAARHALEGIETRDKISWTTLLAAYARHGHGKRAIAVIKRMDH 339

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
            GV+ D  + V++L +C  +  + +G  IH+ +A   +  +     ALVDMY KCG+ + 
Sbjct: 340 EGVKLDSFTFVNLLESCVAIAALALGEEIHDRLAESGIELDPVLQTALVDMYGKCGNPDA 399

Query: 266 ARLVFDRMSE-RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
           AR  FDRMS+ RDV  W +++  Y L    +  LG+F  M  +GV P+++T  S+L AC+
Sbjct: 400 ARRAFDRMSDVRDVTVWNALLAAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACA 459

Query: 325 SLYYLKRGRSLHAWTI------KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           SL  L  GR  H+  +      +Q +    ++ T++I+MYAKC  +  +   FA+  + +
Sbjct: 460 SLAALGLGRLTHSRMLERGLFDRQAVASADLLTTSVINMYAKCGSLADAKAEFAKARRAR 519

Query: 379 T---VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
               V W+A++A     GL+ +A+  F  M  E V+P+  +  S +   +    +++A+ 
Sbjct: 520 ASDVVAWSAMVAAYSQFGLSEEALRCFYSMQQEGVKPDSVSFVSAIAGCSHSGLVREAVA 579

Query: 436 IHCYLIRYGFLSVVEVSTG-LIDIYSKCGSLESAHKIFSEIPI 477
               L     ++  E     L+D+ S+ G +  A  +    P+
Sbjct: 580 FFTSLRHDHGIAPTEAHFACLVDLLSRAGWIREAEALMRRAPL 622


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 217/641 (33%), Positives = 346/641 (53%), Gaps = 17/641 (2%)

Query: 34  QLHAFIITSGPLFT-HLRSSLVRAYGHVSNVR---ILFDEMSERSSFLYNTVMKMYAQNG 89
           Q+   +I SG   T  + +SL+  +G+  ++     +FD+M ER +  +N+++     NG
Sbjct: 181 QVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNG 240

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
               SL+ F   +R      D  T   ++  C      + G  LHG V+ +G + +  V 
Sbjct: 241 HCEKSLEYF-SQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVC 299

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N L++MY   G+ + A  VF  M E  ++SWN++++ +  N     AL +   ML++   
Sbjct: 300 NSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKA 359

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
            +  +  + L AC  L+ +   +++H  V    L  N+   NALV MY K GS+  A+ V
Sbjct: 360 TNYVTFTTALSACYNLETL---KIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRV 416

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA-CSSLYY 328
              M +RD VTW ++I G+A N +   A+  F L++ EGV  N +TI +LLSA  S    
Sbjct: 417 CKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDL 476

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L  G  +HA  +    E E  V+++LI MYA+C  +  S  +F   + K +  WNAIL+ 
Sbjct: 477 LDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSA 536

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL---QQAMNIHCYLIRYGF 445
             H G   +A++L  +M  + +  +  + +    A+AI+ +L    +   +H  +I++GF
Sbjct: 537 NAHYGPGEEALKLIIKMRNDGIHLDQFSFS---VAHAIIGNLTLLDEGQQLHSLIIKHGF 593

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
            S   V    +D+Y KCG ++   +I  + P + +    W+++I+    HG  + A   F
Sbjct: 594 ESNDYVLNATMDMYGKCGEIDDVFRILPQ-P-RSRSQRSWNILISALARHGFFQQAREAF 651

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
            EM+  G++P+ VTF S L ACSHGGL+DEGL  F+ M       +  +H  CI+DLLGR
Sbjct: 652 HEMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGR 711

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           AG+L EA + I  MP+ PT  VW +LL AC IHGN+EL   AA  LFEL+  +   YVL 
Sbjct: 712 AGKLTEAENFINKMPVPPTDLVWRSLLAACKIHGNLELARKAADRLFELDSSDDSAYVLY 771

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILT 666
           S + ++ RRW+D ENVR  M+   ++K PA S ++++N +T
Sbjct: 772 SNVCASTRRWRDVENVRKQMESHNIKKKPACSWVKLKNQVT 812



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 157/569 (27%), Positives = 271/569 (47%), Gaps = 25/569 (4%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +G + + + +FD+M ER+   +N +M  + + G    +++ F  ML  G   P +Y    
Sbjct: 5   FGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHG-VRPSSYVAAS 63

Query: 117 VIKACTDLAWRKLG-IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           ++ AC        G   +H  V+  G   D FVG  L+  Y  FG V     VF  + E 
Sbjct: 64  LVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEP 123

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
           ++VSW +L+ GY  N   KE + V+  + + GV  +  ++ +V+ +CG L +  +G  + 
Sbjct: 124 NIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQVL 183

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
             V    L   ++  N+L+ M+  C S+ EA  VFD M ERD ++W S+I     NG   
Sbjct: 184 GSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCE 243

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            +L  F  M++   + + +TI +LL  C S   L+ GR LH   +K  LE  V V  +L+
Sbjct: 244 KSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLL 303

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
            MY++    + +  VF +  ++  + WN+++A  V NG   +A+EL  +ML      N  
Sbjct: 304 SMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYV 363

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           T  + L A   L  L+    +H ++I  G    + +   L+ +Y K GS+ +A ++   +
Sbjct: 364 TFTTALSACYNLETLKI---VHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIM 420

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA-CSHGGLLD 534
           P  D+D V W+ +I G+  +     A+  F  + + GV  N +T  + L A  S   LLD
Sbjct: 421 P--DRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLD 478

Query: 535 EGLDLF------NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
            G+ +        F LE     S       ++ +  + G L+ +  +   +  K + + W
Sbjct: 479 HGMPIHAHIVVAGFELETFVQSS-------LITMYAQCGDLNTSNYIFDVLANKNS-STW 530

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPE 617
            A+L A   +G    GE A K + ++  +
Sbjct: 531 NAILSANAHYGP---GEEALKLIIKMRND 556



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 137/479 (28%), Positives = 242/479 (50%), Gaps = 12/479 (2%)

Query: 155 MYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
           MY  FG ++ A+ VFD M E +  SWN L+SG+ +  + ++A+  F  ML+ GV P    
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 215 VVSVLPACGYLKEIEMGRM-IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
             S++ AC     +  G   +H  V    L  ++    +L+  Y   G V E  +VF  +
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
            E ++V+WTS++ GYA NG V+  + +++ ++ +GV  N   + +++ +C  L     G 
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGY 180

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            +    IK  L+  V V  +LI M+  C+ ++ +  VF    ++ T+ WN+I+   VHNG
Sbjct: 181 QVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNG 240

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
              K++E F QM     + +  T+++LLP      +L+    +H  +++ G  S V V  
Sbjct: 241 HCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCN 300

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            L+ +YS+ G  E A  +F +  ++++D++ W+ ++A +  +G+   A+ L  EM+Q+  
Sbjct: 301 SLLSMYSQAGKSEDAEFVFHK--MRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRK 358

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
             N VTFT+AL AC +   L + +  F  +L  H      +    +V + G+ G +  A 
Sbjct: 359 ATNYVTFTTALSACYNLETL-KIVHAFVILLGLHHNLIIGN---ALVTMYGKFGSMAAAQ 414

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN-PGNYVLLSKLYSA 631
            + + MP +     W AL+G    H + +    A +    L  E  P NY+ +  L SA
Sbjct: 415 RVCKIMPDRD-EVTWNALIGG---HADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSA 469


>gi|356497951|ref|XP_003517819.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial-like [Glycine max]
          Length = 828

 Score =  355 bits (911), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 209/670 (31%), Positives = 361/670 (53%), Gaps = 17/670 (2%)

Query: 6   HHTLPK-------TTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAY 57
           HH + K        T L   +++  +    +   +++H  I+ +G    H + +SL+  Y
Sbjct: 88  HHHIQKGSRLTQNCTFLYPSVIKAISVVGGLVVGRKVHGRIVKTGLGTDHVIGTSLLGMY 147

Query: 58  GHV---SNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTY 114
           G +   S+ R +FDE+  R    +++V+  Y +NG   + L+M   M+  G   PD+ T 
Sbjct: 148 GELGCLSDARKVFDEIRVRDLVSWSSVVACYVENGRPREGLEMLRWMVSEG-VGPDSVTM 206

Query: 115 PIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
             V +AC  +   +L  ++HG V+      D  + N LI MY     ++ A+ +F+++ +
Sbjct: 207 LSVAEACGKVGCLRLAKSVHGYVIRKEMAGDASLRNSLIVMYGQCSYLRGAKGMFESVSD 266

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
            S   W ++IS   +N   +EA+  F  M +S VE +  +++SVL  C  L  ++ G+ +
Sbjct: 267 PSTACWTSMISSCNQNGCFEEAIDAFKKMQESEVEVNAVTMISVLCCCARLGWLKEGKSV 326

Query: 235 HELVAGGRL-GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           H  +    + G ++    AL+D Y  C  ++    +   +    VV+W ++I+ YA  G 
Sbjct: 327 HCFILRREMDGADLDLGPALMDFYAACWKISSCEKLLCLIGNSSVVSWNTLISIYAREGL 386

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              A+ LF  M  +G+ P+S ++ S +SAC+    ++ G+ +H    K+    E  V+ +
Sbjct: 387 NEEAMVLFVCMLEKGLMPDSFSLASSISACAGASSVRFGQQIHGHVTKRGFADE-FVQNS 445

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           L+DMY+KC  V L++ +F +  +K  V WN ++ G   NG++ +A++LF +M    ++ N
Sbjct: 446 LMDMYSKCGFVDLAYTIFDKIWEKSIVTWNCMICGFSQNGISVEALKLFDEMCFNCMDIN 505

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
           + T  S + A +    L +   IH  L+  G    + + T L+D+Y+KCG L++A  +F+
Sbjct: 506 EVTFLSAIQACSNSGYLLKGKWIHHKLVVSGVQKDLYIDTALVDMYAKCGDLKTAQGVFN 565

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
            +P  +K +V WS +IA YG+HG    A +LF +MV+S ++PNEVTF + L AC H G +
Sbjct: 566 SMP--EKSVVSWSAMIAAYGIHGQITAATTLFTKMVESHIKPNEVTFMNILSACRHAGSV 623

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
           +EG   FN M  ++     A+H+  IVDLL RAG +D AY++I++       ++WGALL 
Sbjct: 624 EEGKFYFNSM-RDYGIVPNAEHFASIVDLLSRAGDIDGAYEIIKSTCQHIDASIWGALLN 682

Query: 594 ACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKA 653
            C IHG ++L     K L E+   + G Y LLS +Y+    W ++  VR  M+  GL+K 
Sbjct: 683 GCRIHGRMDLIHNIHKELREIRTNDTGYYTLLSNIYAEGGNWYESRKVRSRMEGMGLKKV 742

Query: 654 PAHSLIEVRN 663
           P +S IE+ +
Sbjct: 743 PGYSSIEIDD 752



 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 186/629 (29%), Positives = 321/629 (51%), Gaps = 24/629 (3%)

Query: 23  YAATKSIAGTKQLHAFIITSG----PLF-THLRSSLVRAYGHVSNVRILFDEMSERSSFL 77
           + +  ++    QLHA ++ +G    PL  T L  S  R  G + + R++F+      SF+
Sbjct: 8   FRSCSTLRSLSQLHAHLVVTGLHSDPLASTKLLESYARM-GSLHSSRLVFETHPSPDSFM 66

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYT--YPIVIKACTDLAWRKLGIALHG 135
           +  ++K Y  +      + ++   ++ G     N T  YP VIKA + +    +G  +HG
Sbjct: 67  FGVLIKCYLWHHLFDQVVSLYHHHIQKGSRLTQNCTFLYPSVIKAISVVGGLVVGRKVHG 126

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
           R++ TG   D  +G  L+ MY   G +  ARKVFD +    +VSW+++++ Y +N   +E
Sbjct: 127 RIVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSWSSVVACYVENGRPRE 186

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
            L +  WM+  GV PD  +++SV  ACG +  + + + +H  V    +  + +  N+L+ 
Sbjct: 187 GLEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIRKEMAGDASLRNSLIV 246

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           MY +C  +  A+ +F+ +S+     WTSMI+    NG    A+  F+ MQ   V  N++T
Sbjct: 247 MYGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCFEEAIDAFKKMQESEVEVNAVT 306

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLE-CEVIVETALIDMYAKCNLVKLSFQVFART 374
           + S+L  C+ L +LK G+S+H + +++ ++  ++ +  AL+D YA C  +    ++    
Sbjct: 307 MISVLCCCARLGWLKEGKSVHCFILRREMDGADLDLGPALMDFYAACWKISSCEKLLCLI 366

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
                V WN +++     GL  +A+ LF  ML + + P+  +L S + A A  + ++   
Sbjct: 367 GNSSVVSWNTLISIYAREGLNEEAMVLFVCMLEKGLMPDSFSLASSISACAGASSVRFGQ 426

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            IH ++ + GF     V   L+D+YSKCG ++ A+ IF +  I +K IV W+ +I G+  
Sbjct: 427 QIHGHVTKRGFADEF-VQNSLMDMYSKCGFVDLAYTIFDK--IWEKSIVTWNCMICGFSQ 483

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           +G    A+ LF EM  + +  NEVTF SA+ ACS+ G L +G  + + ++ +     + D
Sbjct: 484 NGISVEALKLFDEMCFNCMDINEVTFLSAIQACSNSGYLLKGKWIHHKLVVSG---VQKD 540

Query: 555 HY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
            Y  T +VD+  + G L  A  +  +MP K     W A++ A  IHG +     AA  LF
Sbjct: 541 LYIDTALVDMYAKCGDLKTAQGVFNSMPEKSV-VSWSAMIAAYGIHGQI----TAATTLF 595

Query: 613 E--LEPENPGNYVLLSKLYSAVRRWKDAE 639
              +E     N V    + SA R     E
Sbjct: 596 TKMVESHIKPNEVTFMNILSACRHAGSVE 624


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  355 bits (911), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 196/565 (34%), Positives = 302/565 (53%), Gaps = 2/565 (0%)

Query: 98  FLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYM 157
           FL  +   + +   ++Y  + +AC  L     G  +H R+  T  +    + NCL+ MY 
Sbjct: 74  FLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYC 133

Query: 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVS 217
           + G     +KVFD M   ++VSW  +IS Y KN   ++A+ +F  M  SG+ P+ A  +S
Sbjct: 134 DCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMS 193

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           +L +C     +E+G+ IH  V   +L  NI    A+ +MYV+CG +  A+LVFD M  ++
Sbjct: 194 LLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQN 253

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
            VTWT ++ GY     +  AL LF  M  EGV  +      +L  C  L     GR +H+
Sbjct: 254 AVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHS 313

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
             +K   E EV V T L+D Y KC  ++ +++ F R S+   V W+A+++G   +G    
Sbjct: 314 HIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLED 373

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
            +++F  +  E V  N     S+  A A  A+L      H   I+ G +S +   + ++ 
Sbjct: 374 CIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVT 433

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
           +YSKCG L+ A + F    I + D V W+ II+GY  HG+   A+  F+ M   GV+PN 
Sbjct: 434 MYSKCGRLDYARRAFE--SIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNA 491

Query: 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIR 577
           VTF + L ACSH GL+ E       M  ++      DHY C++D   RAG L EA +LI 
Sbjct: 492 VTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELIN 551

Query: 578 TMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKD 637
            MP +P    W +LLG C  H +++LG++AA+ LF L+P +   Y+LL  LYSA  +W++
Sbjct: 552 RMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEE 611

Query: 638 AENVRDVMDEKGLRKAPAHSLIEVR 662
           A +VR +M E+ L+K  + S I V+
Sbjct: 612 AGHVRKLMAERELKKEVSCSWISVK 636



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 229/451 (50%), Gaps = 6/451 (1%)

Query: 49  LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           + + L+R Y   G   +V+ +FDEM  ++   +  V+  YA+NG    ++++F  M   G
Sbjct: 124 IENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASG 183

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
              P++  Y  ++++C   ++ +LG  +H  V+    + +  V   +  MY+  G ++ A
Sbjct: 184 -IRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGA 242

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           + VFD M   + V+W  L+ GY +    + AL +F  M   GVE D      VL  C  L
Sbjct: 243 KLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGL 302

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           ++ +MGR IH  +        ++    LVD YVKCG +  A   F R+SE + V+W+++I
Sbjct: 303 EDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALI 362

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           +G++ +G + + + +F  ++ EGV  NS    S+  AC++   L  G   H   IK+ L 
Sbjct: 363 SGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLV 422

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
             +  E+A++ MY+KC  +  + + F    +   V W AI++G  ++G A +A+  FR+M
Sbjct: 423 SYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRM 482

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGS 464
               V PN  T  ++L A +    + +A      + R YG    ++    +ID YS+ G 
Sbjct: 483 QSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGL 542

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           L+ A ++ + +P  + D + W  ++ G   H
Sbjct: 543 LQEALELINRMPF-EPDAMSWKSLLGGCWAH 572



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 124/423 (29%), Positives = 200/423 (47%), Gaps = 26/423 (6%)

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           K    KEA      M  + V     S   +  ACG L+ +  GR+IH+ +       + +
Sbjct: 64  KQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGS 123

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             N L+ MY  CGS  + + VFD M  +++V+W  +I+ YA NG++  A+ LF  MQ  G
Sbjct: 124 IENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASG 183

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           +RPNS    SLL +C    +L+ G+ +H+  I+  L   + VETA+ +MY +C  ++ + 
Sbjct: 184 IRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAK 243

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
            VF     +  V W  ++ G         A+ELF +M +E VE ++   + +L     L 
Sbjct: 244 LVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLE 303

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
           D      IH ++++ G  S V V T L+D Y KCG +ESA++ F  I   + + V WS +
Sbjct: 304 DWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRIS--EPNDVSWSAL 361

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC-----------SHGGLLDEGL 537
           I+G+   G  E  + +F  +   GV  N   +TS   AC           +HG  +  GL
Sbjct: 362 ISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGL 421

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             + +              + +V +  + GRLD A     ++  +P    W A++     
Sbjct: 422 VSYLY------------GESAMVTMYSKCGRLDYARRAFESID-EPDAVAWTAIISGYAY 468

Query: 598 HGN 600
           HGN
Sbjct: 469 HGN 471


>gi|255583926|ref|XP_002532711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527557|gb|EEF29678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 679

 Score =  355 bits (911), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 206/576 (35%), Positives = 319/576 (55%), Gaps = 32/576 (5%)

Query: 33  KQLHAFIITSG--PLFTHLRSSLVRAYGHVS---NVRILFDEMSERSSFLYNTVMKMYAQ 87
           KQ+HA ++  G       + +SLV  YG  S   +V  +FD ++ER    +N+++  + +
Sbjct: 97  KQIHAHVVKYGYESSSVAIANSLVNFYGKCSELDDVYKVFDRINERDLVSWNSLISAFCR 156

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR---KLGIALHGRVLITGFDM 144
                 +L+ F  ML   +  P ++T    + AC++L      +LG  +HG     G   
Sbjct: 157 AQEWELALEAFRFMLA-EDLEPSSFTLVSPVIACSNLRKHEGLRLGKQIHGYCFRNGH-W 214

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
            TF  N L+ MY N G +  A+ +F    + +++SWNT+IS + +N    EAL+   +M+
Sbjct: 215 STFTNNALMTMYANLGRLDDAKFLFKLFEDRNLISWNTMISSFSQNERFVEALMSLRYMV 274

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-VAGGRLGKNIAAWNALVDMYVKCGSV 263
             GV+PD  ++ SVLPAC YL+ +  G+ IH   +  G L +N    +ALVDMY  CG V
Sbjct: 275 LEGVKPDGVTLASVLPACSYLEMLGTGKEIHAYALRSGDLIENSFVGSALVDMYCNCGQV 334

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSA 322
              R VFD + ER    W +MI GYA N     AL LF +++   G+ PN+ T+ S++ A
Sbjct: 335 GSGRRVFDGILERKTGLWNAMIAGYAQNEHDEKALMLFIEMVAVAGLCPNTTTMASIVPA 394

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
            +         S+H + IK++LE +  V+ AL+DMY++   +++S  +F     +  V W
Sbjct: 395 SARCESFFSKESIHGYVIKRDLERDRYVQNALMDMYSRMRKMEISKTIFDSMEVRDIVSW 454

Query: 383 NAILAGCVHNGLARKAVELFRQML-------------VEVVEPNDATLNSLLPAYAILAD 429
           N ++ G V +G    A+ +  +M                  +PN  TL ++LP  A LA 
Sbjct: 455 NTMITGYVISGCYNDALLMLHEMQHANEGINKHDGDKQACFKPNSITLMTVLPGCASLAA 514

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L +   IH Y +R    S V V + L+D+Y+KCG L  + ++F ++PIK+  ++ W+VI+
Sbjct: 515 LAKGKEIHAYAVRNALASEVTVGSALVDMYAKCGCLNLSRRVFDQMPIKN--VITWNVIV 572

Query: 490 AGYGMHGHGETAVSLFKEMVQSG-----VQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
             YGMHG+GE A+ LFK+MV  G     V+P EVT  + L ACSH G++DEGL LF+ M 
Sbjct: 573 MAYGMHGNGEEALELFKDMVAKGDNVGEVKPTEVTMIAILAACSHSGMVDEGLKLFHRMK 632

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
           ++H      DHY C+ DLLGRAG++++AYD I TMP
Sbjct: 633 DDHGIEPGPDHYACVADLLGRAGKVEQAYDFINTMP 668



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 161/538 (29%), Positives = 272/538 (50%), Gaps = 43/538 (7%)

Query: 93  DSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF-VGNC 151
           +++  ++ M+ L   +PD+Y +P+V+KA T L    LG  +H  V+  G++  +  + N 
Sbjct: 60  EAISTYVDMI-LSGVSPDSYAFPVVLKAVTGLQDLNLGKQIHAHVVKYGYESSSVAIANS 118

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           L+  Y    E+    KVFD + E  +VSWN+LIS + +    + AL  F +ML   +EP 
Sbjct: 119 LVNFYGKCSELDDVYKVFDRINERDLVSWNSLISAFCRAQEWELALEAFRFMLAEDLEPS 178

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW------------NALVDMYVK 259
             ++VS + AC  L++       HE   G RLGK I  +            NAL+ MY  
Sbjct: 179 SFTLVSPVIACSNLRK-------HE---GLRLGKQIHGYCFRNGHWSTFTNNALMTMYAN 228

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
            G +++A+ +F    +R++++W +MI+ ++ N     AL   + M  EGV+P+ +T+ S+
Sbjct: 229 LGRLDDAKFLFKLFEDRNLISWNTMISSFSQNERFVEALMSLRYMVLEGVKPDGVTLASV 288

Query: 320 LSACSSLYYLKRGRSLHAWTIKQ-NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           L ACS L  L  G+ +HA+ ++  +L     V +AL+DMY  C  V    +VF    ++K
Sbjct: 289 LPACSYLEMLGTGKEIHAYALRSGDLIENSFVGSALVDMYCNCGQVGSGRRVFDGILERK 348

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQML-VEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
           T  WNA++AG   N    KA+ LF +M+ V  + PN  T+ S++PA A         +IH
Sbjct: 349 TGLWNAMIAGYAQNEHDEKALMLFIEMVAVAGLCPNTTTMASIVPASARCESFFSKESIH 408

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            Y+I+        V   L+D+YS+   +E +  IF  + +  +DIV W+ +I GY + G 
Sbjct: 409 GYVIKRDLERDRYVQNALMDMYSRMRKMEISKTIFDSMEV--RDIVSWNTMITGYVISGC 466

Query: 498 GETAVSLFKEMV-------------QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
              A+ +  EM              Q+  +PN +T  + L  C+    L +G ++  + +
Sbjct: 467 YNDALLMLHEMQHANEGINKHDGDKQACFKPNSITLMTVLPGCASLAALAKGKEIHAYAV 526

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
            N    S     + +VD+  + G L+ +  +   MP+K     W  ++ A  +HGN E
Sbjct: 527 RN-ALASEVTVGSALVDMYAKCGCLNLSRRVFDQMPIKNV-ITWNVIVMAYGMHGNGE 582



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 12/210 (5%)

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
           +  +    W   L     + L R+A+  +  M++  V P+      +L A   L DL   
Sbjct: 37  SQSRSQASWIESLRFNTRSNLFREAISTYVDMILSGVSPDSYAFPVVLKAVTGLQDLNLG 96

Query: 434 MNIHCYLIRYGF-LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
             IH ++++YG+  S V ++  L++ Y KC  L+  +K+F    I ++D+V W+ +I+ +
Sbjct: 97  KQIHAHVVKYGYESSSVAIANSLVNFYGKCSELDDVYKVFDR--INERDLVSWNSLISAF 154

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
                 E A+  F+ M+   ++P+  T  S + ACS+     EGL L     + H  C R
Sbjct: 155 CRAQEWELALEAFRFMLAEDLEPSSFTLVSPVIACSN-LRKHEGLRLGK---QIHGYCFR 210

Query: 553 ADHYTCIVD-----LLGRAGRLDEAYDLIR 577
             H++   +     +    GRLD+A  L +
Sbjct: 211 NGHWSTFTNNALMTMYANLGRLDDAKFLFK 240


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 207/638 (32%), Positives = 348/638 (54%), Gaps = 10/638 (1%)

Query: 33  KQLHAFII-TSGPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSF-LYNTVMKMYAQ 87
           KQ+H F++  S    + L+++L+  Y   G   +   +F E+ ++S+  L+N ++  +  
Sbjct: 190 KQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGG 249

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           +G    SL +++ + +       + ++   + AC+       G  +H  V+  G   D +
Sbjct: 250 SGICESSLDLYM-LAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPY 308

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           V   L++MY   G V  A  VF  + +  +  WN +++ Y +N Y   AL +F +M +  
Sbjct: 309 VCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKS 368

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           V PD  ++ +V+  C  L     G+ +H  +    +       +AL+ +Y KCG   +A 
Sbjct: 369 VLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAY 428

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE--GVRPNSLTIGSLLSACSS 325
           LVF  M E+D+V W S+I+G   NG  + AL +F  M+ +   ++P+S  + S+ +AC+ 
Sbjct: 429 LVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAG 488

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           L  L+ G  +H   IK  L   V V ++LID+Y+KC L +++ +VF   S +  V WN++
Sbjct: 489 LEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSM 548

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           ++    N L   +++LF  ML + + P+  ++ S+L A +  A L +  ++H Y +R G 
Sbjct: 549 ISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRLGI 608

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
            S   +   LID+Y KCG  + A  IF ++  + K ++ W+++I GYG HG   TA+SLF
Sbjct: 609 PSDTHLKNALIDMYVKCGFSKYAENIFKKM--QHKSLITWNLMIYGYGSHGDCITALSLF 666

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
            EM ++G  P++VTF S + AC+H G ++EG ++F FM +++      +HY  +VDLLGR
Sbjct: 667 DEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGR 726

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           AG L+EAY  I+ MP++   ++W  LL A   H NVELG ++A+ L  +EPE    YV L
Sbjct: 727 AGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGSTYVQL 786

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
             LY       +A  +  +M EKGL K P  S IEV +
Sbjct: 787 INLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVSD 824



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 146/510 (28%), Positives = 247/510 (48%), Gaps = 33/510 (6%)

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
           +T+P ++KAC+ L     G  +HG V++ G+  D F+   L+ MY+  G +  A +VFD 
Sbjct: 61  FTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDG 120

Query: 172 MWEHS--------VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS---VVSVLP 220
            W  S        V  WN++I GYFK    KE +  F  ML  GV PD  S   VVSV+ 
Sbjct: 121 -WSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMC 179

Query: 221 ACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG-SVNEARLVFDRMSERDVV 279
             G  +  E G+ IH  +    L  +     AL+DMY K G S++  R+  +   + +VV
Sbjct: 180 KEGNFRR-EEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVV 238

Query: 280 TWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWT 339
            W  MI G+  +G   ++L L+ L +   V+  S +    L ACS       GR +H   
Sbjct: 239 LWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDV 298

Query: 340 IKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAV 399
           +K  L  +  V T+L+ MY+KC +V  +  VF+    K+   WNA++A    N     A+
Sbjct: 299 VKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSAL 358

Query: 400 ELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459
           +LF  M  + V P+  TL++++   ++L       ++H  L +    S   + + L+ +Y
Sbjct: 359 DLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLY 418

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV--QSGVQPNE 517
           SKCG    A+ +F    +++KD+V W  +I+G   +G  + A+ +F +M      ++P+ 
Sbjct: 419 SKCGCDPDAYLVFKS--MEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDS 476

Query: 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY------TCIVDLLGRAGRLDE 571
              TS  +AC+       GL+   F L+ H +  +          + ++DL  + G  + 
Sbjct: 477 DIMTSVTNACA-------GLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEM 529

Query: 572 AYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
           A  +  +M  +   A W +++ +C    N+
Sbjct: 530 ALKVFTSMSTENMVA-WNSMI-SCYSRNNL 557


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 193/541 (35%), Positives = 301/541 (55%), Gaps = 12/541 (2%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF-DAMWEHSVVSWNTLISGYF 188
           G  +H  +LI GF         LI MY    ++  A  +F D   E +V ++N +ISG+ 
Sbjct: 56  GKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFI 115

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
            N + +E    +  M   GV PD  +    + AC  + EI   + IH L+    L  ++ 
Sbjct: 116 TNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGLELDVF 172

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             +ALV+ Y+K G +  A++ F+ +  RDVV W +M+NGYA  G     L  F+ M  E 
Sbjct: 173 IGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDES 232

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           V P+  T+  +LS  + +  L  GR +H + +K   +  V V  +LIDMY KC  ++ + 
Sbjct: 233 VVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDAL 292

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           ++F    +K    WN+I++     G     + L  +ML   ++P+  T+ ++LPA + LA
Sbjct: 293 EIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLA 352

Query: 429 DLQQAMNIHCYLIRYGF------LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
            L     IH Y+I  G       +  V +   +ID+Y+KCGS+  AH +F  +   +KD+
Sbjct: 353 ALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERM--SNKDV 410

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
             W+++I GYGMHG+G  A+ +F  M +  ++P+EVTF   L ACSH G + +G +    
Sbjct: 411 ASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQ 470

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           M   +      +HYTC++D+LGRAG+LDEAY+L  TMP++    VW ALL AC +H +  
Sbjct: 471 MKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAV 530

Query: 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           L EVAA+ +FELEPE+ G+YVL+S +Y AV R+++   VR  M ++ +RK P  S IE++
Sbjct: 531 LAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELK 590

Query: 663 N 663
           N
Sbjct: 591 N 591



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 141/504 (27%), Positives = 252/504 (50%), Gaps = 17/504 (3%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLR-SSLVRAYGHVSNVR---- 64
           P      I  +Q  A  K+++  K++H++++ +G L + L  +SL+  Y   + +     
Sbjct: 34  PYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALS 93

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           I  D   E + F +N ++  +  NG   +  + +  M   G   PD +T+P  IKAC D+
Sbjct: 94  IFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVI-PDKFTFPCAIKACLDV 152

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
              K    +HG +   G ++D F+G+ L+  Y+ FG ++ A+  F+ +    VV WN ++
Sbjct: 153 LEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMV 209

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           +GY +    +  L  F  M    V P   +V  VL     + ++  GR+IH         
Sbjct: 210 NGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYD 269

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
             +A  N+L+DMY KC  + +A  +F+ M E+D+ +W S+++ +   GD    L L   M
Sbjct: 270 SGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRM 329

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC------EVIVETALIDMY 358
              G++P+ +T+ ++L ACS L  L  GR +H + I   L        +V+++ A+IDMY
Sbjct: 330 LGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMY 389

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
           AKC  ++ +  VF R S K    WN ++ G   +G   +A+E+F +M    ++P++ T  
Sbjct: 390 AKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFV 449

Query: 419 SLLPAYAILADLQQAMNIHCYL-IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            +L A +    + Q  N    +  +Y     +E  T +ID+  + G L+ A+++   +PI
Sbjct: 450 GVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPI 509

Query: 478 KDKDIVVWSVIIAGYGMHGHGETA 501
            + + VVW  ++A   +H H   A
Sbjct: 510 -EANPVVWRALLAACRLHKHAVLA 532



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 141/286 (49%), Gaps = 11/286 (3%)

Query: 310 RPNSLT--IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           +P +LT  I SL  A +    L +G+ +H++ +        +  T+LI+MY+KCN +  +
Sbjct: 33  QPYNLTTCIASL-QASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFA 91

Query: 368 FQVFARTSKKKTV-PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
             +F+  + +  V  +NAI++G + NG   +  E +++M  E V P+  T    + A   
Sbjct: 92  LSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKA--- 148

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
             D+ +   IH  L ++G    V + + L++ Y K G +E A   F E+PI  +D+V+W+
Sbjct: 149 CLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPI--RDVVLWN 206

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            ++ GY   G  E  +  F+ M    V P+  T T  L   +  G L+ G  +  F ++ 
Sbjct: 207 AMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKM 266

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
                 A   + ++D+ G+   +++A ++   M  K   + W +++
Sbjct: 267 GYDSGVAVSNS-LIDMYGKCKCIEDALEIFEMMREKDIFS-WNSIV 310



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 22/199 (11%)

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           N  T  + L A A   +L +   IH Y++  GFL+     T LI++YSKC  +  A  IF
Sbjct: 36  NLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIF 95

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC----- 527
           S+ P  + ++  ++ II+G+  +G  E     +++M   GV P++ TF  A+ AC     
Sbjct: 96  SD-PTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLE 154

Query: 528 ---SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
               HG L   GL+L  F+             + +V+   + G ++ A      +P++  
Sbjct: 155 IKKIHGLLFKFGLELDVFI------------GSALVNCYLKFGLMEHAQVAFEELPIRDV 202

Query: 585 HAVWGALLGACVIHGNVEL 603
             +W A++      G  E+
Sbjct: 203 -VLWNAMVNGYAQIGQFEM 220


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 193/541 (35%), Positives = 301/541 (55%), Gaps = 12/541 (2%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF-DAMWEHSVVSWNTLISGYF 188
           G  +H  +LI GF         LI MY    ++  A  +F D   E +V ++N +ISG+ 
Sbjct: 56  GKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFI 115

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
            N + +E    +  M   GV PD  +    + AC  + EI   + IH L+    L  ++ 
Sbjct: 116 TNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI---KKIHGLLFKFGLELDVF 172

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             +ALV+ Y+K G +  A++ F+ +  RDVV W +M+NGYA  G     L  F+ M  E 
Sbjct: 173 IGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDES 232

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           V P+  T+  +LS  + +  L  GR +H + +K   +  V V  +LIDMY KC  ++ + 
Sbjct: 233 VVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDAL 292

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           ++F    +K    WN+I++     G     + L  +ML   ++P+  T+ ++LPA + LA
Sbjct: 293 EIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLA 352

Query: 429 DLQQAMNIHCYLIRYGF------LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
            L     IH Y+I  G       +  V +   +ID+Y+KCGS+  AH +F  +   +KD+
Sbjct: 353 ALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERM--SNKDV 410

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
             W+++I GYGMHG+G  A+ +F  M +  ++P+EVTF   L ACSH G + +G +    
Sbjct: 411 ASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQ 470

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           M   +      +HYTC++D+LGRAG+LDEAY+L  TMP++    VW ALL AC +H +  
Sbjct: 471 MKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAV 530

Query: 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           L EVAA+ +FELEPE+ G+YVL+S +Y AV R+++   VR  M ++ +RK P  S IE++
Sbjct: 531 LAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELK 590

Query: 663 N 663
           N
Sbjct: 591 N 591



 Score =  224 bits (572), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 141/504 (27%), Positives = 252/504 (50%), Gaps = 17/504 (3%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLR-SSLVRAYGHVSNVR---- 64
           P      I  +Q  A  K+++  K++H++++ +G L + L  +SL+  Y   + +     
Sbjct: 34  PYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALS 93

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           I  D   E + F +N ++  +  NG   +  + +  M   G   PD +T+P  IKAC D+
Sbjct: 94  IFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVI-PDKFTFPCAIKACLDV 152

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
              K    +HG +   G ++D F+G+ L+  Y+ FG ++ A+  F+ +    VV WN ++
Sbjct: 153 LEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMV 209

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           +GY +    +  L  F  M    V P   +V  VL     + ++  GR+IH         
Sbjct: 210 NGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYD 269

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
             +A  N+L+DMY KC  + +A  +F+ M E+D+ +W S+++ +   GD    L L   M
Sbjct: 270 SGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRM 329

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC------EVIVETALIDMY 358
              G++P+ +T+ ++L ACS L  L  GR +H + I   L        +V+++ A+IDMY
Sbjct: 330 LGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMY 389

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
           AKC  ++ +  VF R S K    WN ++ G   +G   +A+E+F +M    ++P++ T  
Sbjct: 390 AKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFV 449

Query: 419 SLLPAYAILADLQQAMNIHCYL-IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            +L A +    + Q  N    +  +Y     +E  T +ID+  + G L+ A+++   +PI
Sbjct: 450 GVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPI 509

Query: 478 KDKDIVVWSVIIAGYGMHGHGETA 501
            + + VVW  ++A   +H H   A
Sbjct: 510 -EANPVVWRALLAACRLHKHAVLA 532



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 131/265 (49%), Gaps = 8/265 (3%)

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV-PWNAILA 387
           L +G+ +H++ +        +  T+LI+MY+KCN +  +  +F+  + +  V  +NAI++
Sbjct: 53  LSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIIS 112

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G + NG   +  E +++M  E V P+  T    + A     D+ +   IH  L ++G   
Sbjct: 113 GFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKA---CLDVLEIKKIHGLLFKFGLEL 169

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            V + + L++ Y K G +E A   F E+PI  +D+V+W+ ++ GY   G  E  +  F+ 
Sbjct: 170 DVFIGSALVNCYLKFGLMEHAQVAFEELPI--RDVVLWNAMVNGYAQIGQFEMVLETFRR 227

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M    V P+  T T  L   +  G L+ G  +  F ++       A   + ++D+ G+  
Sbjct: 228 MNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNS-LIDMYGKCK 286

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALL 592
            +++A ++   M  K   + W +++
Sbjct: 287 CIEDALEIFEMMREKDIFS-WNSIV 310



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 22/199 (11%)

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           N  T  + L A A   +L +   IH Y++  GFL+     T LI++YSKC  +  A  IF
Sbjct: 36  NLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIF 95

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC----- 527
           S+ P  + ++  ++ II+G+  +G  E     +++M   GV P++ TF  A+ AC     
Sbjct: 96  SD-PTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLE 154

Query: 528 ---SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
               HG L   GL+L  F+             + +V+   + G ++ A      +P++  
Sbjct: 155 IKKIHGLLFKFGLELDVFI------------GSALVNCYLKFGLMEHAQVAFEELPIRDV 202

Query: 585 HAVWGALLGACVIHGNVEL 603
             +W A++      G  E+
Sbjct: 203 -VLWNAMVNGYAQIGQFEM 220


>gi|302756099|ref|XP_002961473.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
 gi|300170132|gb|EFJ36733.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
          Length = 643

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 209/625 (33%), Positives = 333/625 (53%), Gaps = 11/625 (1%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH---VSNVRILFDEMSERS 74
           +++  A+ + +   KQ    I   G     +L + LV+AYG    V + R +FD +  R+
Sbjct: 18  ILRDCASARDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDRIQRRN 77

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
            F +  ++  YA NG   ++L +F  +   G    DN T    +KAC      + G  +H
Sbjct: 78  IFSWTIMLGAYADNGHGREALGLFREIQSRG-MAIDNVTLVSALKACAVAGDLEEGRGIH 136

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
                 G++ +  V   L++MY   G ++ A+ VF  + E + VSWN +++ Y +N + +
Sbjct: 137 ASARSLGYESEIIVATALVSMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQNGHCE 196

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           EA+ ++  M   G++PD  + VSVL   G+  E E G  IH+ V     G N    NALV
Sbjct: 197 EAVRLYRLMCFEGIKPDATTFVSVLD--GWKGEGEHGTRIHDQVLESGFGSNTTLANALV 254

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF---QLMQFEGVRP 311
            MY   G V++AR VFD ++E+ VV+W +M+  YA NG    A+ LF     M+   V P
Sbjct: 255 SMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGKAVDLFWKMDEMRRALVEP 314

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           NS+T  +LL AC++  +L+ GR +HA      L   + V  ALI+MY++C  + L+  VF
Sbjct: 315 NSVTFVNLLVACAATGFLEAGRKIHAEVASLGLLSTLSVGGALINMYSECGNLVLAKSVF 374

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
                K  V WN ++     +G  ++A+ + ++M +E ++P+  T  S+L A +    L 
Sbjct: 375 DSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHACSASEALA 434

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           +   IH  +   G      + T LI++Y KCGSLE A  +F ++  + +++V W+ ++A 
Sbjct: 435 EGKAIHALIAASGLERDEAIGTALINLYGKCGSLEQARNVFLDMKSR-RNLVTWNSMLAA 493

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
               G  E  V +   M   G+ P+E+TF S L ACSHGG + +GLDLF     ++   +
Sbjct: 494 ACTKGGLEDCVEIIHMMGLEGIMPDELTFLSVLFACSHGGSIQQGLDLFLSAGVDYGIAT 553

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
              HY C+VD+LGR GRL+EA +++  MP +     W  LLGAC IH + E G  AA ++
Sbjct: 554 NTKHYVCVVDILGRVGRLEEAQEVLNRMPFQANDVAWMTLLGACRIHRDFEQGRRAADYV 613

Query: 612 FELEPENPGNYVLLSKLYSAVRRWK 636
            EL+P+N   Y LLS ++S   R +
Sbjct: 614 IELDPQNAAPYALLSTMFSVAGRGR 638



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 221/448 (49%), Gaps = 12/448 (2%)

Query: 213 ASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR 272
           +S  S+L  C   +++   +     +A    G +    N LV  Y KCGSV +AR VFDR
Sbjct: 13  SSHASILRDCASARDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDR 72

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
           +  R++ +WT M+  YA NG  R ALGLF+ +Q  G+  +++T+ S L AC+    L+ G
Sbjct: 73  IQRRNIFSWTIMLGAYADNGHGREALGLFREIQSRGMAIDNVTLVSALKACAVAGDLEEG 132

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           R +HA       E E+IV TAL+ MY KC  ++ +  VFA   ++  V WNA+LA    N
Sbjct: 133 RGIHASARSLGYESEIIVATALVSMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQN 192

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
           G   +AV L+R M  E ++P+  T  S+L  +    + +    IH  ++  GF S   ++
Sbjct: 193 GHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWK--GEGEHGTRIHDQVLESGFGSNTTLA 250

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF---KEMV 509
             L+ +Y   G ++ A  +F    I +K +V W+ ++  Y  +G    AV LF    EM 
Sbjct: 251 NALVSMYGSGGRVDDARYVFD--GIAEKTVVSWNAMLTAYAQNGRYGKAVDLFWKMDEMR 308

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           ++ V+PN VTF + L AC+  G L+ G  + +  + +    S       ++++    G L
Sbjct: 309 RALVEPNSVTFVNLLVACAATGFLEAGRKI-HAEVASLGLLSTLSVGGALINMYSECGNL 367

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629
             A  +  ++P K     W  L+G+    G+ +   +      ELE   P  +  +S L+
Sbjct: 368 VLAKSVFDSVPHKNL-VSWNVLIGSYAGDGDGKEA-LGVHQKMELEGLKPDKFTFISVLH 425

Query: 630 --SAVRRWKDAENVRDVMDEKGLRKAPA 655
             SA     + + +  ++   GL +  A
Sbjct: 426 ACSASEALAEGKAIHALIAASGLERDEA 453


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 195/540 (36%), Positives = 300/540 (55%), Gaps = 7/540 (1%)

Query: 128 KLGIALHGRVLIT-GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
           +LG A H +++ T    + +F+ N L+ MY       +A+ +       SVV+W  LI+G
Sbjct: 23  RLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAG 82

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-VAGGRLGK 245
             +N     AL  F  M +  ++P+  +      A G L+   +G+ +H L V  G++  
Sbjct: 83  SVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISD 142

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
                +A  DMY K G   EAR +FD M ER++ TW + ++   L G   +AL  F   +
Sbjct: 143 VFVGCSAF-DMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFR 201

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            EG  PN +T  + L+AC+   YL+ GR LH + ++   E +V V   LID Y KC+ V 
Sbjct: 202 HEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVG 261

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            S  +F+  SK   V W +++   V N    KA  +F +   E +EP D  ++S+L A A
Sbjct: 262 CSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACA 321

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            L+ L+   ++H   ++   +  + V + L+D+Y KCGS+E A + F E+P  ++++V W
Sbjct: 322 GLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMP--ERNLVTW 379

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSG--VQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
           + +I GY   G  + AV+LF EM      V PN VTF   L ACS  G ++ G+++F  M
Sbjct: 380 NAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESM 439

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
              +     A+HY C+VDLLGRAG +++AY  I+ MP++PT +VWGALLGA  + G  EL
Sbjct: 440 RGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSEL 499

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           G+VAA  LFEL+P + GN+VLLS +++A  RW++A  VR  M + G++K    S I   N
Sbjct: 500 GKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGN 559



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 138/489 (28%), Positives = 227/489 (46%), Gaps = 10/489 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITS--GPLFTHLRSSLVRAYGHV---SNVRILFDEMSER 73
           LV+   +T+     +  HA II +   PL + + + LV  Y  +   ++ ++L      R
Sbjct: 12  LVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNR 71

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           S   +  ++    QNG    +L  F  M R     P+++T+P   KA   L    +G  +
Sbjct: 72  SVVTWTALIAGSVQNGRFTSALFHFSNMRR-DSIQPNDFTFPCAFKASGSLRSPLVGKQV 130

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H   +  G   D FVG     MY   G  + ARK+FD M E ++ +WN  +S        
Sbjct: 131 HALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRY 190

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
            +AL  F      G EP+  +  + L AC     + +GR +H  V       +++  N L
Sbjct: 191 DDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGL 250

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           +D Y KC  V  + ++F  +S+ + V+W SMI  Y  N +   A  +F   + EG+ P  
Sbjct: 251 IDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTD 310

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
             + S+LSAC+ L  L+ G+S+H   +K  +   + V +AL+DMY KC  ++ + + F  
Sbjct: 311 FMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDE 370

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV--EVVEPNDATLNSLLPAYAILADLQ 431
             ++  V WNA++ G  H G A  AV LF +M      V PN  T   +L A +    + 
Sbjct: 371 MPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVN 430

Query: 432 QAMNIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
             M I   +  RYG     E    ++D+  + G +E A++   ++PI+   + VW  ++ 
Sbjct: 431 VGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIR-PTVSVWGALLG 489

Query: 491 GYGMHGHGE 499
              M G  E
Sbjct: 490 ASKMFGKSE 498


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 184/449 (40%), Positives = 272/449 (60%), Gaps = 5/449 (1%)

Query: 217 SVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER 276
           ++L  C +L ++  G++IH L+   R   ++   N L+++Y KCG +  AR +FD MS R
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK--RGRS 334
           DVVTWT++I GY+ +   ++AL L   M   G++PN  T+ SLL A S +      +GR 
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 335 LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
           LH   ++   +  V V  A++DMYA+C+ ++ +  +F     K  V WNA++AG    G 
Sbjct: 140 LHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQ 199

Query: 395 ARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTG 454
             KA  LF  ML E V+P   T +S+L A A +  L+Q   +H  +I++G   V  V   
Sbjct: 200 GDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNT 259

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           L+D+Y+K GS+E A K+F  +    +D+V W+ ++ GY  HG G+ A+  F+EM+++ + 
Sbjct: 260 LLDMYAKSGSIEDAKKVFDRLA--KRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIA 317

Query: 515 PNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYD 574
           PN++TF   L ACSH GLLDEG   F+ M++ +    +  HY  +VDLLGRAG LD A  
Sbjct: 318 PNDITFLCVLTACSHAGLLDEGRHYFD-MMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQ 376

Query: 575 LIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRR 634
            I  MP+KPT AVWGALLGAC +H N+ELG  AA+ +FEL+   PG +VLL  +Y+   R
Sbjct: 377 FISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGR 436

Query: 635 WKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           W DA  VR +M E G++K PA S +E+ N
Sbjct: 437 WNDAAKVRKMMKESGVKKEPACSWVEMEN 465



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 121/385 (31%), Positives = 204/385 (52%), Gaps = 3/385 (0%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           ++K CT L     G  +H  +L + F  D  + N L+ +Y   G++  ARK+FD M    
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL--KEIEMGRMI 234
           VV+W  LI+GY ++   ++AL++   ML+ G++P+  ++ S+L A   +   ++  GR +
Sbjct: 81  VVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQL 140

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H L        N+    A++DMY +C  + EA+L+FD M  ++ V+W ++I GYA  G  
Sbjct: 141 HGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQG 200

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             A  LF  M  E V+P   T  S+L AC+S+  L++G+ +HA  IK   +    V   L
Sbjct: 201 DKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTL 260

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           +DMYAK   ++ + +VF R +K+  V WN++L G   +GL + A++ F +ML   + PND
Sbjct: 261 LDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPND 320

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
            T   +L A +    L +  +    + +Y     +     ++D+  + G L+ A +  SE
Sbjct: 321 ITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISE 380

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGE 499
           +PIK     VW  ++    MH + E
Sbjct: 381 MPIK-PTAAVWGALLGACRMHKNME 404



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/349 (31%), Positives = 185/349 (53%), Gaps = 11/349 (3%)

Query: 49  LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           ++++L+  Y   G +   R LFDEMS R    +  ++  Y+Q+    D+L +   MLR+G
Sbjct: 52  MQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIG 111

Query: 106 EYNPDNYTYPIVIKACTDLAWRKL--GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163
              P+ +T   ++KA + +    +  G  LHG  L  G+D + +V   ++ MY     ++
Sbjct: 112 -LKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLE 170

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
            A+ +FD M   + VSWN LI+GY +     +A  +F  ML+  V+P   +  SVL AC 
Sbjct: 171 EAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACA 230

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAW--NALVDMYVKCGSVNEARLVFDRMSERDVVTW 281
            +  +E G+ +H L+   + G+ + A+  N L+DMY K GS+ +A+ VFDR+++RDVV+W
Sbjct: 231 SMGSLEQGKWVHALMI--KWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSW 288

Query: 282 TSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
            SM+ GY+ +G  + AL  F+ M    + PN +T   +L+ACS    L  GR       K
Sbjct: 289 NSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKK 348

Query: 342 QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP-WNAILAGC 389
            N+E ++     ++D+  +   +  + Q  +    K T   W A+L  C
Sbjct: 349 YNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGAC 397



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 136/267 (50%), Gaps = 10/267 (3%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYG---H 59
           P+  TL      ++K      +T  + G +QLH   +  G     ++  +++  Y    H
Sbjct: 114 PNQFTLAS----LLKAASGVGSTDVLQG-RQLHGLCLRYGYDSNVYVSCAILDMYARCHH 168

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           +   +++FD M  ++   +N ++  YA+ G    +  +F  MLR     P ++TY  V+ 
Sbjct: 169 LEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLR-ENVKPTHFTYSSVLC 227

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           AC  +   + G  +H  ++  G  +  FVGN L+ MY   G ++ A+KVFD + +  VVS
Sbjct: 228 ACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVS 287

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WN++++GY ++   K AL  F+ ML++ + P+  + + VL AC +   ++ GR   +++ 
Sbjct: 288 WNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMK 347

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEA 266
              +   I+ +  +VD+  + G ++ A
Sbjct: 348 KYNVEPQISHYVTMVDLLGRAGHLDRA 374



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 41/232 (17%)

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           ++LL     L  L +   IH  L+   F   + +   L+++Y+KCG L  A K+F E+  
Sbjct: 19  HTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMS- 77

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS--------- 528
             +D+V W+ +I GY  H   + A+ L  EM++ G++PN+ T  S L A S         
Sbjct: 78  -SRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQ 136

Query: 529 ----HGGLLDEGLDLFNF----MLENHQTCSRADHYTCIVDLL---------------GR 565
               HG  L  G D   +    +L+ +  C   +    I D++                R
Sbjct: 137 GRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYAR 196

Query: 566 AGRLDEAYDLIRTM---PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
            G+ D+A+ L   M    +KPTH  + ++L AC   G++E G    KW+  L
Sbjct: 197 KGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQG----KWVHAL 244


>gi|302807080|ref|XP_002985271.1| hypothetical protein SELMODRAFT_121697 [Selaginella moellendorffii]
 gi|300147099|gb|EFJ13765.1| hypothetical protein SELMODRAFT_121697 [Selaginella moellendorffii]
          Length = 744

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 206/615 (33%), Positives = 327/615 (53%), Gaps = 12/615 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V + R  FD M  R+   ++ ++  YAQ G   D+L++F+ M   G    +  T+  V
Sbjct: 6   GSVIHARRAFDAMVVRNVVSWSAMIAAYAQRGHPADALELFVRMDHEG-VKANAITFVSV 64

Query: 118 IKACTDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           + AC  L    LG ++H R++  G    D  +GN ++ MY   GEV  AR+VF+ M   +
Sbjct: 65  LDACASLGAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFERMEAKN 124

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
            V+WNT+I+   ++   KEA  +   M   G+ P+  ++VSV+ AC +++ I  GR++HE
Sbjct: 125 TVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAWMQSISRGRIVHE 184

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
           +VAG  L  + A  NALV++Y KCG +  AR   + +  RD ++WT+++  YA +G  + 
Sbjct: 185 IVAGEGLESDNAVANALVNLYGKCGKLRAARHALEGIETRDKISWTTLLAAYARHGHGKR 244

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A+ + + M  EGV+ +S T  +LL +C ++  L  G  +H    +  +E + +++TAL+D
Sbjct: 245 AIAVIKRMDHEGVKLDSFTFVNLLESCVAIAALALGEEIHDRLAESGIELDPVLQTALVD 304

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVP-WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           MY KC     + + F R    + V  WNA+LA  V     ++ + +F +M ++ V P+  
Sbjct: 305 MYGKCGNPDAARRAFDRMRDVRDVTVWNALLAAYVLRDQGKETLGIFARMSLQGVAPDAV 364

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEV------STGLIDIYSKCGSLESAH 469
           T  S+L A A LA L      H  ++  G      V      +T +I++Y+KCGSL  A 
Sbjct: 365 TFLSILDACASLAALGLGRLTHSRMLERGLFDRQAVASADLLTTSVINMYAKCGSLADAK 424

Query: 470 KIFSEI-PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
             F++    +  D+V WS ++A Y   G  E A+  F  M Q GV+P+ V+F SA+  CS
Sbjct: 425 AEFAKARRARASDVVAWSAMVAAYSQFGLSEEALRCFYSMQQEGVKPDSVSFVSAIAGCS 484

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           H GL+ E +  F  +  +H       H+ C+VDLL RAG + EA  L+R  PL   H+ W
Sbjct: 485 HSGLVREAVAFFTSLRHDHGIAPTEAHFACLVDLLSRAGWIREAEALMRRAPLGAHHSTW 544

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
             LL AC  +G++E     A  L  L   +   Y LL+ ++   R+W D  N R  + E+
Sbjct: 545 MTLLSACRTYGDLERARRVAARLASLRSGSA--YSLLASVFCLSRKWDDVRNARQSLVER 602

Query: 649 GLRKAPAHSLIEVRN 663
           G    P  S IE+ N
Sbjct: 603 GFITQPGCSWIEINN 617



 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 146/472 (30%), Positives = 245/472 (51%), Gaps = 14/472 (2%)

Query: 155 MYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
           MY   G V  AR+ FDAM   +VVSW+ +I+ Y +  +  +AL +F  M   GV+ +  +
Sbjct: 1   MYNRCGSVIHARRAFDAMVVRNVVSWSAMIAAYAQRGHPADALELFVRMDHEGVKANAIT 60

Query: 215 VVSVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
            VSVL AC  L  I +G+ IHE +VA G LG ++   N +V+MY KCG V+ AR VF+RM
Sbjct: 61  FVSVLDACASLGAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFERM 120

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
             ++ VTW +MI   + +   + A  L   M  +G+RPN +T+ S++ AC+ +  + RGR
Sbjct: 121 EAKNTVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAWMQSISRGR 180

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            +H     + LE +  V  AL+++Y KC  ++ +         +  + W  +LA    +G
Sbjct: 181 IVHEIVAGEGLESDNAVANALVNLYGKCGKLRAARHALEGIETRDKISWTTLLAAYARHG 240

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
             ++A+ + ++M  E V+ +  T  +LL +   +A L     IH  L   G      + T
Sbjct: 241 HGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAIAALALGEEIHDRLAESGIELDPVLQT 300

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKD-KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
            L+D+Y KCG+ ++A + F    ++D +D+ VW+ ++A Y +   G+  + +F  M   G
Sbjct: 301 ALVDMYGKCGNPDAARRAFDR--MRDVRDVTVWNALLAAYVLRDQGKETLGIFARMSLQG 358

Query: 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE----NHQTCSRADHYTC-IVDLLGRAG 567
           V P+ VTF S L AC+    L  G    + MLE    + Q  + AD  T  ++++  + G
Sbjct: 359 VAPDAVTFLSILDACASLAALGLGRLTHSRMLERGLFDRQAVASADLLTTSVINMYAKCG 418

Query: 568 RL-DEAYDLIRTMPLKPTHAV-WGALLGACVIHGNVELGEVAAKWLFELEPE 617
            L D   +  +    + +  V W A++ A   +    L E A +  + ++ E
Sbjct: 419 SLADAKAEFAKARRARASDVVAWSAMVAA---YSQFGLSEEALRCFYSMQQE 467



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 126/463 (27%), Positives = 215/463 (46%), Gaps = 41/463 (8%)

Query: 56  AYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG-------------------------- 89
           A G   + RI+ D +      L NT++ MY + G                          
Sbjct: 75  ALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFERMEAKNTVTWNTMIAA 134

Query: 90  -ASHDSLK---MFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
            + HD  K     LG + L    P+  T   VI AC  +     G  +H  V   G + D
Sbjct: 135 CSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAWMQSISRGRIVHEIVAGEGLESD 194

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
             V N L+ +Y   G+++AAR   + +     +SW TL++ Y ++ + K A+ V   M  
Sbjct: 195 NAVANALVNLYGKCGKLRAARHALEGIETRDKISWTTLLAAYARHGHGKRAIAVIKRMDH 254

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
            GV+ D  + V++L +C  +  + +G  IH+ +A   +  +     ALVDMY KCG+ + 
Sbjct: 255 EGVKLDSFTFVNLLESCVAIAALALGEEIHDRLAESGIELDPVLQTALVDMYGKCGNPDA 314

Query: 266 ARLVFDRMSE-RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
           AR  FDRM + RDV  W +++  Y L    +  LG+F  M  +GV P+++T  S+L AC+
Sbjct: 315 ARRAFDRMRDVRDVTVWNALLAAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACA 374

Query: 325 SLYYLKRGRSLHAWTI------KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           SL  L  GR  H+  +      +Q +    ++ T++I+MYAKC  +  +   FA+  + +
Sbjct: 375 SLAALGLGRLTHSRMLERGLFDRQAVASADLLTTSVINMYAKCGSLADAKAEFAKARRAR 434

Query: 379 T---VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
               V W+A++A     GL+ +A+  F  M  E V+P+  +  S +   +    +++A+ 
Sbjct: 435 ASDVVAWSAMVAAYSQFGLSEEALRCFYSMQQEGVKPDSVSFVSAIAGCSHSGLVREAVA 494

Query: 436 IHCYLIRYGFLSVVEVSTG-LIDIYSKCGSLESAHKIFSEIPI 477
               L     ++  E     L+D+ S+ G +  A  +    P+
Sbjct: 495 FFTSLRHDHGIAPTEAHFACLVDLLSRAGWIREAEALMRRAPL 537


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 197/536 (36%), Positives = 300/536 (55%), Gaps = 9/536 (1%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G+ LH  ++  GF  DT + N LI MY   G++  A +VFD M E +VVSW  L+ G+  
Sbjct: 23  GVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLH 82

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-VAGGRLGKNIA 248
           +  A+E L +F  M  SG  P+  ++ + L ACG       G  IH + V  G  G ++ 
Sbjct: 83  HGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQIHGVCVRTGFEGHDVV 140

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE- 307
           A N+LV MY K     +AR VFD +  R++ TW SMI+GYA  G  R++L +F+ MQ   
Sbjct: 141 A-NSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRH 199

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE--CEVIVETALIDMYAKCNLVK 365
             +P+  T  SLL ACS L   + G  +HA    + +      I+  AL+D+Y KC+ + 
Sbjct: 200 DEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLP 259

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
           ++ QVF    ++  + W  ++ G    G  ++A+ LFR+     V  +   L+S++  +A
Sbjct: 260 VAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFA 319

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
             A ++Q   +HCY  +      V V+  L+D+Y KCG    A + F E+P ++  +V W
Sbjct: 320 DFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARN--VVSW 377

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I G G HGHG  A+ LF+EM   GV+ +EV + + L ACSH GL+DE    F+ + +
Sbjct: 378 TAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQ 437

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
           + +   +A+HY C+VDLLGRAG L EA +LI +MP++PT  VW  LL AC +H +V +G 
Sbjct: 438 DRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGR 497

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
                L  ++ +NP NYV+LS + +    W++ + +R  M  KGLRK    S  EV
Sbjct: 498 EVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCSWTEV 553



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 135/491 (27%), Positives = 245/491 (49%), Gaps = 16/491 (3%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNVRI---LFDEM 70
           ++  L++  A   S+ G  QLHA ++  G    T L ++L+  Y     + +   +FD M
Sbjct: 6   MIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGM 65

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
            ER+   +  +M  +  +G + + L++F G +R    +P+ +T    +KAC      + G
Sbjct: 66  PERNVVSWTALMVGFLHHGEARECLRLF-GEMRGSGTSPNEFTLSATLKACG--GGTRAG 122

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           + +HG  + TGF+    V N L+ MY        AR+VFD +   ++ +WN++ISGY   
Sbjct: 123 VQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHA 182

Query: 191 AYAKEALVVFDWMLKSGVE-PDCASVVSVLPACGYLKEIEMGRMIHELVA--GGRLGKNI 247
              +++L+VF  M +   E PD  +  S+L AC  L     G  +H  +A  G     N 
Sbjct: 183 GQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNA 242

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
               AL+D+YVKC  +  A  VFD +  R+ + WT++I G+A  G V+ A+ LF+     
Sbjct: 243 ILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSS 302

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           GVR +   + S+++  +    +++G+ +H +T K     +V V  +L+DMY KC L   +
Sbjct: 303 GVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEA 362

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA-- 425
            + F     +  V W A++ G   +G  R+A++LF +M  E VE ++    +LL A +  
Sbjct: 363 GRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHS 422

Query: 426 -ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
            ++ + ++  +  C   R       E    ++D+  + G L  A ++   +P+ +  + V
Sbjct: 423 GLVDECRRYFSRICQDRR--MRPKAEHYACMVDLLGRAGELREAKELILSMPM-EPTVGV 479

Query: 485 WSVIIAGYGMH 495
           W  +++   +H
Sbjct: 480 WQTLLSACRVH 490



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 188/407 (46%), Gaps = 12/407 (2%)

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           +  +L A      +  G  +H  +     G +    N L+DMY KCG ++ A  VFD M 
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 66

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
           ER+VV+WT+++ G+  +G+ R  L LF  M+  G  PN  T+ + L AC      + G  
Sbjct: 67  ERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGG--GTRAGVQ 124

Query: 335 LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
           +H   ++   E   +V  +L+ MY+K      + +VF     +    WN++++G  H G 
Sbjct: 125 IHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQ 184

Query: 395 ARKAVELFRQMLVEVVE-PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF--LSVVEV 451
            R ++ +FR+M     E P++ T  SLL A + L   ++   +H  +   G    S   +
Sbjct: 185 GRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAIL 244

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
           +  L+D+Y KC  L  A ++F    ++ ++ + W+ +I G+   G  + A+ LF+    S
Sbjct: 245 AGALLDVYVKCHRLPVAMQVFD--GLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSS 302

Query: 512 GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571
           GV+ +    +S +   +   L+++G  +  +  +             +VD+  + G   E
Sbjct: 303 GVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLD-VSVANSLVDMYLKCGLTGE 361

Query: 572 AYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
           A    R MP +     W A++     HG+   G  A     E++ E 
Sbjct: 362 AGRRFREMPARNV-VSWTAMINGVGKHGH---GREAIDLFEEMQAEG 404



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 108/231 (46%), Gaps = 3/231 (1%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD +  R++  + TV+  +AQ G   +++ +F      G    D +    V+    D A
Sbjct: 264 VFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSG-VRADGHVLSSVVAVFADFA 322

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             + G  +H     T   +D  V N L+ MY+  G    A + F  M   +VVSW  +I+
Sbjct: 323 LVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMIN 382

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI-EMGRMIHELVAGGRLG 244
           G  K+ + +EA+ +F+ M   GVE D  + +++L AC +   + E  R    +    R+ 
Sbjct: 383 GVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMR 442

Query: 245 KNIAAWNALVDMYVKCGSVNEAR-LVFDRMSERDVVTWTSMINGYALNGDV 294
                +  +VD+  + G + EA+ L+     E  V  W ++++   ++ DV
Sbjct: 443 PKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDV 493


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 202/625 (32%), Positives = 334/625 (53%), Gaps = 14/625 (2%)

Query: 49  LRSSLVRAYGHVSN---VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           LR++L+ AY  +      R L DEM  R++  +N ++  Y++ G +  SL+      R G
Sbjct: 45  LRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAG 104

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
             + D ++Y   + AC+     + G A+H   ++ G     FV N L++MY   GE+  A
Sbjct: 105 -VDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEA 163

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           R+VFD   E   VSWN+L+SGY +    +E + VF  M + G+  +  ++ SV+  C   
Sbjct: 164 RRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGR 223

Query: 226 KE--IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
            +  +++   +H  V    L  ++   +A++DMY K G++ EA  +F  + E +VV + +
Sbjct: 224 GDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNT 283

Query: 284 MINGYALNGDV------RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
           MI G+     V        AL L+  +Q  G++P   T  S+L AC+   YL+ G+ +H 
Sbjct: 284 MIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHG 343

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
             IK   + +  + +ALID+Y     ++  F+ F  + K   V W A+++GCV N L  K
Sbjct: 344 QVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEK 403

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
           A+ LF + L   ++P+  T++S++ A A LA  +    I C+  + GF     +    + 
Sbjct: 404 ALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVH 463

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
           +Y++ G +++A + F E+  +  D+V WS +I+ +  HG    A+  F EMV + V PNE
Sbjct: 464 MYARSGDVDAATRRFQEM--ESHDVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNE 521

Query: 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIR 577
           +TF   L ACSHGGL+DEGL  +  M +++       H TC+VDLLGRAGRL +A   I 
Sbjct: 522 ITFLGVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFIS 581

Query: 578 TMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKD 637
                    +W +LL +C IH ++E G++ A  + ELEP +  +YV+L  +Y        
Sbjct: 582 NGIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYLDAGELSL 641

Query: 638 AENVRDVMDEKGLRKAPAHSLIEVR 662
           A   RD+M ++G++K P  S IE++
Sbjct: 642 ASKTRDLMKQRGVKKEPGLSWIELK 666


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 190/535 (35%), Positives = 300/535 (56%), Gaps = 3/535 (0%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  LH  ++  G   +TF+ N  + +Y   GE+    K+FD M + ++VSW ++I+G+  
Sbjct: 94  GKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAH 153

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N+  +EAL  F  M   G      ++ SVL AC  L  I+ G  +H LV     G  +  
Sbjct: 154 NSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGCELFV 213

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
            + L DMY KCG +++A   F+ M  +D V WTSMI+G+  NGD + AL  +  M  + V
Sbjct: 214 GSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDV 273

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
             +   + S LSACS+L     G+SLHA  +K   E E  +  AL DMY+K   +  +  
Sbjct: 274 FIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASN 333

Query: 370 VFARTSKK-KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           VF   S     V   AI+ G V      KA+  F  +    +EPN+ T  SL+ A A  A
Sbjct: 334 VFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQA 393

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            L+    +H  ++++ F     VS+ L+D+Y KCG  + + ++F EI  ++ D + W+ +
Sbjct: 394 KLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEI--ENPDEIAWNTL 451

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           +  +  HG G  A+  F  M+  G++PN VTF + L  CSH G++++GL+ F+ M + + 
Sbjct: 452 VGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYG 511

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAA 608
              + +HY+C++DLLGRAG+L EA D I  MP +P    W + LGAC IHG++E  + AA
Sbjct: 512 VVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAA 571

Query: 609 KWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
             L +LEPEN G +VLLS +Y+  ++W+D +++R ++ +  + K P +S +++RN
Sbjct: 572 DKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRN 626



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 154/505 (30%), Positives = 241/505 (47%), Gaps = 13/505 (2%)

Query: 5   SHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPL-FTHLRSSLVRAY---GHV 60
           S H L  T   V  L+Q YA TK +   KQLHA +I  G L  T L +  +  Y   G +
Sbjct: 68  SGHKLSDTK-TVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGEL 126

Query: 61  SNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKA 120
                LFD+MS+R+   + +++  +A N    ++L  F  M   GE     +    V++A
Sbjct: 127 DYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEI-ATQFALSSVLQA 185

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
           CT L   + G  +H  V+  GF  + FVG+ L  MY   GE+  A K F+ M     V W
Sbjct: 186 CTSLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLW 245

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
            ++I G+ KN   K+AL  +  M+   V  D   + S L AC  LK    G+ +H  +  
Sbjct: 246 TSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATIL- 304

Query: 241 GRLGKNIAAW--NALVDMYVKCGSVNEARLVFDRMSE-RDVVTWTSMINGYALNGDVRNA 297
            +LG     +  NAL DMY K G +  A  VF   S+   +V+ T++I+GY     +  A
Sbjct: 305 -KLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKA 363

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L  F  ++  G+ PN  T  SL+ AC++   L+ G  LH   +K N + +  V + L+DM
Sbjct: 364 LSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDM 423

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y KC L   S Q+F        + WN ++     +GL R A+E F  M+   ++PN  T 
Sbjct: 424 YGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTF 483

Query: 418 NSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
            +LL   +    ++  +N    + + YG +   E  + +ID+  + G L+ A    + +P
Sbjct: 484 VNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMP 543

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETA 501
             + ++  W   +    +HG  E A
Sbjct: 544 F-EPNVFGWCSFLGACKIHGDMERA 567



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 195/395 (49%), Gaps = 15/395 (3%)

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D  +V  ++      KE+  G+ +H ++  G    N    N  +++Y KCG ++    +F
Sbjct: 74  DTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLF 133

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
           D+MS+R++V+WTS+I G+A N   + AL  F  M+ EG       + S+L AC+SL  ++
Sbjct: 134 DKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQ 193

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
            G  +H   +K    CE+ V + L DMY+KC  +  + + F     K  V W +++ G V
Sbjct: 194 FGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFV 253

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
            NG  +KA+  + +M+ + V  +   L S L A + L       ++H  +++ GF     
Sbjct: 254 KNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETF 313

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           +   L D+YSK G + SA  +F +I      IV  + II GY      E A+S F ++ +
Sbjct: 314 IGNALTDMYSKSGDMVSASNVF-QIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRR 372

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDL------FNFMLENHQTCSRADHYTCIVDLLG 564
            G++PNE TFTS + AC++   L+ G  L      FNF  +   +       + +VD+ G
Sbjct: 373 RGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVS-------STLVDMYG 425

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           + G  D +  L   +   P    W  L+G    HG
Sbjct: 426 KCGLFDHSIQLFDEIE-NPDEIAWNTLVGVFSQHG 459


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 184/483 (38%), Positives = 294/483 (60%), Gaps = 3/483 (0%)

Query: 183 LISGYFKNAYAKEALVVF-DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG 241
           +ISG+ KN+  ++++ VF D +L +G   D  +V++VLPA   L+E+++G  I  L    
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
               +++    L+ ++ KCG V  ARL+F  + ++D+++  +MI+G+  NG+  +++ LF
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
           + +   G R +S TI  L+   S   +      +H + +K  +     V TAL  +Y + 
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
           N +  + Q+F  +++K    WNA+++GC  NGL   A+ LF+ M    V PN  T+ S+L
Sbjct: 181 NEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSIL 240

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            A A +  L     +H  +    F S V VST LID+Y+KCGS+  A ++F  +P  +K+
Sbjct: 241 SACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMP--EKN 298

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
            V W+ +I+GYG+HGHG+ A+ LF +M+ S V+P  +TF S L+ACSH GL+ EG  +F+
Sbjct: 299 EVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFH 358

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            M+ +      A+HY C+VD+LGRAG+L +A + I+ MP++P   VWGALLGAC+IH + 
Sbjct: 359 TMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDT 418

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            L  VA++ LFEL+PEN G YVL+S +YS  R++  A +VR V  +K L K P  +LIE+
Sbjct: 419 NLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEI 478

Query: 662 RNI 664
             +
Sbjct: 479 GQV 481



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/412 (27%), Positives = 205/412 (49%), Gaps = 2/412 (0%)

Query: 85  YAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDM 144
           + +N    DS+++F  M+       D  T   V+ A  +L   KLG+ +    +  GF  
Sbjct: 5   FVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKCGFYS 64

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
              +   LI+++   GEV+ AR +F  + +  ++S N +ISG+  N   ++++ +F  +L
Sbjct: 65  HVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELL 124

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
            SG     +++V ++P         +   IH       +  + +   AL  +Y +   + 
Sbjct: 125 SSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMI 184

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
            AR +FD  +E+ + +W +MI+G   NG    A+ LFQ MQ   V PN +T+ S+LSAC+
Sbjct: 185 FARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACA 244

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
            +  L  G  +H+       E  V V TALIDMYAKC  + ++ ++F    +K  V WNA
Sbjct: 245 QIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNA 304

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI-HCYLIRY 443
           +++G   +G  ++A++LF  ML   V+P   T  S+L A +    +++   I H  +  +
Sbjct: 305 MISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDF 364

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           GF  + E    ++DI  + G L+ A +    +P+ +    VW  ++    +H
Sbjct: 365 GFEPLAEHYACMVDILGRAGQLKKALEFIKAMPV-EPGPPVWGALLGACMIH 415



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 169/342 (49%), Gaps = 5/342 (1%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           SL    G V   R+LF E+ ++     N ++  +  NG + DS+++F  +L  GE    +
Sbjct: 74  SLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGE-RVSS 132

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T   +I   +      L   +HG  +  G    + V   L  +Y    E+  AR++FD 
Sbjct: 133 STIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDE 192

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
             E ++ SWN +ISG  +N     A+ +F  M K+ V P+  +V S+L AC  +  + +G
Sbjct: 193 SAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLG 252

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
             +H L+   R   N+    AL+DMY KCGS+  AR +FD M E++ VTW +MI+GY L+
Sbjct: 253 EWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLH 312

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G  + AL LF  M    V+P  LT  S+L ACS    +K G  +   T+  +   E + E
Sbjct: 313 GHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIF-HTMVHDFGFEPLAE 371

Query: 352 --TALIDMYAKCNLVKLSFQVFARTSKKKTVP-WNAILAGCV 390
               ++D+  +   +K + +       +   P W A+L  C+
Sbjct: 372 HYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACM 413


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 197/536 (36%), Positives = 300/536 (55%), Gaps = 9/536 (1%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G+ LH  ++  GF  DT + N LI MY   G++  A +VFD M E +VVSW  L+ G+  
Sbjct: 219 GVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLH 278

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-VAGGRLGKNIA 248
           +  A+E L +F  M  SG  P+  ++ + L ACG       G  IH + V  G  G ++ 
Sbjct: 279 HGEARECLRLFGEMRGSGTSPNEFTLSATLKACG--GGTRAGVQIHGVCVRTGFEGHDVV 336

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE- 307
           A N+LV MY K     +AR VFD +  R++ TW SMI+GYA  G  R++L +F+ MQ   
Sbjct: 337 A-NSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRH 395

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE--CEVIVETALIDMYAKCNLVK 365
             +P+  T  SLL ACS L   + G  +HA    + +      I+  AL+D+Y KC+ + 
Sbjct: 396 DEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLP 455

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
           ++ QVF    ++  + W  ++ G    G  ++A+ LFR+     V  +   L+S++  +A
Sbjct: 456 VAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFA 515

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
             A ++Q   +HCY  +      V V+  L+D+Y KCG    A + F E+P ++  +V W
Sbjct: 516 DFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARN--VVSW 573

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I G G HGHG  A+ LF+EM   GV+ +EV + + L ACSH GL+DE    F+ + +
Sbjct: 574 TAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQ 633

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
           + +   +A+HY C+VDLLGRAG L EA +LI +MP++PT  VW  LL AC +H +V +G 
Sbjct: 634 DRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGR 693

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
                L  ++ +NP NYV+LS + +    W++ + +R  M  KGLRK    S  EV
Sbjct: 694 EVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMRRKGLRKQGGCSWTEV 749



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 137/498 (27%), Positives = 248/498 (49%), Gaps = 17/498 (3%)

Query: 9   LP-KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNVRI- 65
           LP +   ++  L++  A   S+ G  QLHA ++  G    T L ++L+  Y     + + 
Sbjct: 195 LPMERRRMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMA 254

Query: 66  --LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
             +FD M ER+   +  +M  +  +G + + L++F G +R    +P+ +T    +KAC  
Sbjct: 255 GEVFDGMPERNVVSWTALMVGFLHHGEARECLRLF-GEMRGSGTSPNEFTLSATLKACG- 312

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
               + G+ +HG  + TGF+    V N L+ MY        AR+VFD +   ++ +WN++
Sbjct: 313 -GGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSM 371

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVE-PDCASVVSVLPACGYLKEIEMGRMIHELVA--G 240
           ISGY      +++L+VF  M +   E PD  +  S+L AC  L     G  +H  +A  G
Sbjct: 372 ISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRG 431

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
                N     AL+D+YVKC  +  A  VFD +  R+ + WT++I G+A  G V+ A+ L
Sbjct: 432 VSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCL 491

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
           F+     GVR +   + S+++  +    +++G+ +H +T K     +V V  +L+DMY K
Sbjct: 492 FRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLK 551

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           C L   + + F     +  V W A++ G   +G  R+A++LF +M  E VE ++    +L
Sbjct: 552 CGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLAL 611

Query: 421 LPAYA---ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           L A +   ++ + ++  +  C   R       E    ++D+  + G L  A ++   +P+
Sbjct: 612 LSACSHSGLVDECRRYFSRICQDRR--MRPKAEHYACMVDLLGRAGELREAKELILSMPM 669

Query: 478 KDKDIVVWSVIIAGYGMH 495
            +  + VW  +++   +H
Sbjct: 670 -EPTVGVWQTLLSACRVH 686



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 188/407 (46%), Gaps = 12/407 (2%)

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           +  +L A      +  G  +H  +     G +    N L+DMY KCG ++ A  VFD M 
Sbjct: 203 IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 262

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
           ER+VV+WT+++ G+  +G+ R  L LF  M+  G  PN  T+ + L AC      + G  
Sbjct: 263 ERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGG--GTRAGVQ 320

Query: 335 LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
           +H   ++   E   +V  +L+ MY+K      + +VF     +    WN++++G  H G 
Sbjct: 321 IHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQ 380

Query: 395 ARKAVELFRQMLVEVVE-PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF--LSVVEV 451
            R ++ +FR+M     E P++ T  SLL A + L   ++   +H  +   G    S   +
Sbjct: 381 GRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAIL 440

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
           +  L+D+Y KC  L  A ++F    ++ ++ + W+ +I G+   G  + A+ LF+    S
Sbjct: 441 AGALLDVYVKCHRLPVAMQVFD--GLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSS 498

Query: 512 GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571
           GV+ +    +S +   +   L+++G  +  +  +             +VD+  + G   E
Sbjct: 499 GVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLD-VSVANSLVDMYLKCGLTGE 557

Query: 572 AYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
           A    R MP +     W A++     HG+   G  A     E++ E 
Sbjct: 558 AGRRFREMPARNV-VSWTAMINGVGKHGH---GREAIDLFEEMQAEG 600



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 108/231 (46%), Gaps = 3/231 (1%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD +  R++  + TV+  +AQ G   +++ +F      G    D +    V+    D A
Sbjct: 460 VFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSG-VRADGHVLSSVVAVFADFA 518

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             + G  +H     T   +D  V N L+ MY+  G    A + F  M   +VVSW  +I+
Sbjct: 519 LVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMIN 578

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI-EMGRMIHELVAGGRLG 244
           G  K+ + +EA+ +F+ M   GVE D  + +++L AC +   + E  R    +    R+ 
Sbjct: 579 GVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMR 638

Query: 245 KNIAAWNALVDMYVKCGSVNEAR-LVFDRMSERDVVTWTSMINGYALNGDV 294
                +  +VD+  + G + EA+ L+     E  V  W ++++   ++ DV
Sbjct: 639 PKAEHYACMVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDV 689


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 192/552 (34%), Positives = 319/552 (57%), Gaps = 14/552 (2%)

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAM--YMNFGEVKAARKVFDAMWEH 175
           ++ CT ++  K    +H ++L T   +D F  + ++A     + G +  AR VF+ +   
Sbjct: 47  LEKCTTMSQLK---QIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNP 103

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
           +  + N++I GY      ++A++ +  M+  G++PD  +  S+  +CG L E   G+ +H
Sbjct: 104 TTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLH 160

Query: 236 ELVAGGRLGKNIAAW--NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
                 +LG    A+  N L++MY  CG +  AR VFD+M  + VV+W +MI  YA    
Sbjct: 161 --CHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDL 218

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              A+ LF+ M+   V+PN +T+ ++L+AC+    L+  + +H +  +  +    ++ +A
Sbjct: 219 PHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSA 278

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           L+D+Y KC    L+  +F +  +K    WN ++ G V +    +A+ LF +M +  V+ +
Sbjct: 279 LMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGD 338

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
             T+ SLL A   L  L+    +H Y+ +      V + T L+D+Y+KCGS+ESA ++F 
Sbjct: 339 KVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQ 398

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
           E+P  +KD++ W+ +I G  M G G  A+ LF EM  S V+P+ +TF   L ACSH GL+
Sbjct: 399 EMP--EKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLV 456

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
           +EG+  FN M   +      +HY C+VD+LGRAGR+ EA DLI+ MP+ P + V   LL 
Sbjct: 457 NEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLS 516

Query: 594 ACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKA 653
           AC IHGN+ + E AA+ L EL+P+N G YVLLS +YS+++ W+ A+ +R++M E+ ++K 
Sbjct: 517 ACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKP 576

Query: 654 PAHSLIEVRNIL 665
           P  S IEV  ++
Sbjct: 577 PGCSAIEVGGVV 588



 Score =  242 bits (617), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 141/490 (28%), Positives = 260/490 (53%), Gaps = 12/490 (2%)

Query: 28  SIAGTKQLHAFIITSGPLFTHLRSSLVRAY------GHVSNVRILFDEMSERSSFLYNTV 81
           +++  KQ+HA ++ +        +S + A+      G +   R++F+++   ++F  N++
Sbjct: 52  TMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSI 111

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           ++ Y        ++ +F  ++ L   +PD +T+P + K+C  L     G  LH      G
Sbjct: 112 IRGYTNKNLPRQAI-LFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLG 167

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
           F  D ++ N L+ MY N G + +ARKVFD M   SVVSW T+I  Y +     EA+ +F 
Sbjct: 168 FASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFR 227

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
            M  + V+P+  ++V+VL AC   +++E  + +H+ +    +G +    +AL+D+Y KCG
Sbjct: 228 RMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCG 287

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
               AR +F++M E+++  W  MING+  + D   AL LF  MQ  GV+ + +T+ SLL 
Sbjct: 288 CYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLI 347

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
           AC+ L  L+ G+ LH +  K+ +E +V + TAL+DMYAKC  ++ + +VF    +K  + 
Sbjct: 348 ACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMT 407

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN-IHCYL 440
           W A++ G    G   KA+ELF +M +  V+P+  T   +L A +    + + +   +   
Sbjct: 408 WTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMP 467

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
            +YG    +E    ++D+  + G +  A  +   +P+   D  V   +++   +HG+   
Sbjct: 468 NKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMA-PDYFVLVGLLSACRIHGNLVV 526

Query: 501 AVSLFKEMVQ 510
           A    +++++
Sbjct: 527 AERAAQQLIE 536


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 219/679 (32%), Positives = 361/679 (53%), Gaps = 35/679 (5%)

Query: 14  HLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH---LRSSLVRAY---GHVSNVRILF 67
           H +I LV   +   ++A  +++H+ I  S   F     L ++L+  Y   G + + +  F
Sbjct: 8   HALIALVNACSCLGNLAAGRRIHSQI--SDRDFEENSVLGNALISMYSKCGSLIDAKQAF 65

Query: 68  DEM---SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           D +   S+R    +N ++  + +NG++ ++L++F  M   G   P++ T+  V+ +C + 
Sbjct: 66  DRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEA 125

Query: 125 AWRKLGI--ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF----DAMWEHSVV 178
               L    A+HGR++  G + + FV   L+  Y   G +  A +VF    D     S+V
Sbjct: 126 GLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLV 185

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI---- 234
           + + +IS  ++N + +E+L +F  M   G +P   ++VSVL AC  L        +    
Sbjct: 186 TCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAFVLEQA 245

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
            E+V+  R   N+     L+  Y +   ++ AR  FD +   DVV+W +M   Y  +   
Sbjct: 246 MEVVSATR--DNVLG-TTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRP 302

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKR-----GRSLHAWTIKQNLECEVI 349
           R AL LF+ M  EGVRP+  T  + L+AC++  Y  +     G+ + +   +  LE +  
Sbjct: 303 REALVLFERMLLEGVRPSVATFITALTACAA--YPPQTASAIGKRIQSLLEEAGLEGDTA 360

Query: 350 VETALIDMYAKCNLVKLSFQVFARTS--KKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           V  A ++MYAKC  +  +  VF R S  ++  + WN++LA   H+GL ++A ELF+ M  
Sbjct: 361 VANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEA 420

Query: 408 E-VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
           E +V+PN  T  ++L A      + Q   IH  ++  GF S   +   L+++Y+KCGSL+
Sbjct: 421 EKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLD 480

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
            A  IF +     +D++ W+ ++AGY  +G  E A+ LF  M Q GV+PN +TF SAL A
Sbjct: 481 DAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTA 540

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           C+HGG L++G +L + M  +H     + H++CIVDLLGR GRLDEA  L+     +    
Sbjct: 541 CNHGGKLEQGCELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTS-QADVI 599

Query: 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646
            W ALL AC     +E GE  A+ + +L+PE   +Y++L+ +Y+A  RW +A  +R  M 
Sbjct: 600 TWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTML 659

Query: 647 EKGLRKAPAHSLIEVRNIL 665
           +KG+R  P  S +EV   L
Sbjct: 660 DKGIRADPGCSAVEVNQEL 678



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 163/553 (29%), Positives = 263/553 (47%), Gaps = 58/553 (10%)

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
           E  P+ +    ++ AC+ L     G  +H ++    F+ ++ +GN LI+MY   G +  A
Sbjct: 2   EVRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDA 61

Query: 166 RKVFDAMWEHS---VVSWNTLISGYFKNAYAKEALVVFDWMLKSGV-EPDCASVVSVLPA 221
           ++ FD +   S   VV+WN +IS + +N  A+EAL +F  M   G   P+  + VSVL +
Sbjct: 62  KQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDS 121

Query: 222 C--GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD-- 277
           C    L  +E  R IH  + G  + +      ALVD Y K GS+++A  VF R S+ +  
Sbjct: 122 CVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPS 181

Query: 278 --VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
             +VT ++MI+    NG  + +L LF  M  EG +P+ +T+ S+L+ACS L       S 
Sbjct: 182 TSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPV----GSA 237

Query: 336 HAWTIKQNLEC-----EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
            A+ ++Q +E      + ++ T L+  YA+ N +  +   F        V WNA+ A  +
Sbjct: 238 TAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYL 297

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM---NIHCYLIRYGFLS 447
            +   R+A+ LF +ML+E V P+ AT  + L A A       +     I   L   G   
Sbjct: 298 QHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEG 357

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
              V+   +++Y+KCGSL  A  +F  I    +D + W+ ++A YG HG G+ A  LF+ 
Sbjct: 358 DTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQA 417

Query: 508 M-VQSGVQPNEVTFTSALHACS-----------HGGLLDEGLD----LFNFMLENHQTCS 551
           M  +  V+PN+VTF + L A +           H  ++  G +    + N +L  +  C 
Sbjct: 418 MEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCG 477

Query: 552 RADHYTCIVD---------------LLGRA--GRLDEAYDLIRTMP---LKPTHAVWGAL 591
             D    I D               + G A  G+ + A  L  TM    ++P H  + + 
Sbjct: 478 SLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISA 537

Query: 592 LGACVIHGNVELG 604
           L AC   G +E G
Sbjct: 538 LTACNHGGKLEQG 550


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 219/613 (35%), Positives = 332/613 (54%), Gaps = 20/613 (3%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVM-KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           G V++ R +FD M      +  T M    A+NGA   SL +   ML  G   P+ YT   
Sbjct: 98  GAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGEMLESGLL-PNAYTLCA 156

Query: 117 VIKAC--TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
              AC   +L     G+ L     +  +  D  VG+ LI M    G++ +ARKVFD + E
Sbjct: 157 AAHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIE 216

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
            +VV W  LIS Y +   A+EA+ +F   L+ G EPD  ++ S++ AC  L  + +G  +
Sbjct: 217 KTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQL 276

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCG---SVNEARLVFDRMSERDVVTWTSMINGYALN 291
           H L     L  +      LVDMY K     +++ A  VF+RM + DV++WT++I+GY  +
Sbjct: 277 HSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQS 336

Query: 292 GDVRN-ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           G   N  + LF  M  E ++PN +T  S+L +C+S+     GR +HA  IK N      V
Sbjct: 337 GVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTV 396

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
             AL+ MYA+   ++ + +VF +  ++  +P       C+  G   +   L  +++   V
Sbjct: 397 GNALVSMYAESGCMEEARRVFNQLYERSMIP-------CITEG---RDFPLDHRIVRMDV 446

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
             + +T  SL+ A A +  L +   +H   ++ GF S   VS  L+ +YS+CG LE A +
Sbjct: 447 GISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACR 506

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
            F+E+  KD++++ W+ +I+G   HG+ E A+SLF +M+ +GV+PN+VT+ + L ACSH 
Sbjct: 507 SFNEL--KDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHV 564

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           GL+ EG + F  M  +H    R +HY C+VDLL R+G + EA + I  MPLK    VW  
Sbjct: 565 GLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKT 624

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LLGAC  H N+E+GE+ AK + ELEP +P  YVLLS LY+    W +   +R  M +  L
Sbjct: 625 LLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNL 684

Query: 651 RKAPAHSLIEVRN 663
            K    S +EV N
Sbjct: 685 NKETGLSWMEVEN 697



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 147/520 (28%), Positives = 248/520 (47%), Gaps = 55/520 (10%)

Query: 128 KLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE-HSVVSWNTLIS 185
           +LG ALH R+L     D D  V N L+ +Y   G V +AR VFD M     +VSW  + S
Sbjct: 65  RLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMAS 124

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI------EMGRMIHELVA 239
              +N   + +L++   ML+SG+ P+  ++ +   AC +  E+       +  ++H++  
Sbjct: 125 CLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHAC-FPHELYCLVGGVVLGLVHKM-- 181

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
            G  G ++A  +AL+DM  + G +  AR VFD + E+ VV WT +I+ Y        A+ 
Sbjct: 182 -GLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVE 240

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           LF     +G  P+  T+ S++SAC+ L  ++ G  LH+  ++  L  +  V   L+DMYA
Sbjct: 241 LFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYA 300

Query: 360 KCNL---VKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR-KAVELFRQMLVEVVEPNDA 415
           K N+   +  + +VF R  K   + W A+++G V +G+   K + LF +ML E ++PN  
Sbjct: 301 KSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHI 360

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           T +S+L + A ++D      +H ++I+    S   V   L+ +Y++ G +E A ++F+++
Sbjct: 361 TYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQL 420

Query: 476 ---------------PIKDKDIVVWSVII------------AGYGMHGHGETAVSLFKEM 508
                          P+ D  IV   V I            A  GM   G+    L    
Sbjct: 421 YERSMIPCITEGRDFPL-DHRIVRMDVGISSSTFASLISAAASVGMLTKGQ---QLHAMS 476

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
           +++G   +     S +   S  G L++    FN  L++    S    +T ++  L + G 
Sbjct: 477 LKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFN-ELKDRNVIS----WTSMISGLAKHGY 531

Query: 569 LDEAYDLIRTMPL---KPTHAVWGALLGACVIHGNVELGE 605
            + A  L   M L   KP    + A+L AC   G V  G+
Sbjct: 532 AERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGK 571



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/354 (30%), Positives = 187/354 (52%), Gaps = 11/354 (3%)

Query: 227 EIEMGRMIHE-LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-RDVVTWTSM 284
           ++ +GR +H  L+ G  L ++    N+L+ +Y +CG+V  AR VFD M   RD+V+WT+M
Sbjct: 63  DLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAM 122

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC-SSLYYLKRGRSLHAWTIKQN 343
            +  A NG  R +L L   M   G+ PN+ T+ +   AC     Y   G  +     K  
Sbjct: 123 ASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMG 182

Query: 344 L-ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
           L   +V V +ALIDM A+   +  + +VF    +K  V W  +++  V    A +AVELF
Sbjct: 183 LWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELF 242

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
              L +  EP+  T++S++ A   L  ++  + +H   +R G  S   VS GL+D+Y+K 
Sbjct: 243 LDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKS 302

Query: 463 G---SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV-SLFKEMVQSGVQPNEV 518
               +++ A+K+F  +P    D++ W+ +I+GY   G  E  V +LF EM+   ++PN +
Sbjct: 303 NIGQAMDYANKVFERMP--KNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHI 360

Query: 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572
           T++S L +C+     D G  +   +++++Q  +       +V +   +G ++EA
Sbjct: 361 TYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVG-NALVSMYAESGCMEEA 413


>gi|15231402|ref|NP_188004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273848|sp|Q9LRV9.1|PP228_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13880
 gi|9294611|dbj|BAB02912.1| probable selenium-binding protein [Arabidopsis thaliana]
 gi|332641909|gb|AEE75430.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 748

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 208/608 (34%), Positives = 324/608 (53%), Gaps = 11/608 (1%)

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
           R LFD M ER+   +N+++  Y Q G    ++++FL   R      D +TY   +  C +
Sbjct: 102 RQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEA-REANLKLDKFTYAGALGFCGE 160

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
                LG  LHG V++ G     F+ N LI MY   G++  A  +FD   E   VSWN+L
Sbjct: 161 RCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSL 220

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY-LKE--IEMGRMIHELVAG 240
           ISGY +   A+E L +   M + G+     ++ SVL AC   L E  IE G  IH   A 
Sbjct: 221 ISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAK 280

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN---- 296
             +  +I    AL+DMY K GS+ EA  +F  M  ++VVT+ +MI+G+    ++ +    
Sbjct: 281 LGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASS 340

Query: 297 -ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            A  LF  MQ  G+ P+  T   +L ACS+   L+ GR +HA   K N + +  + +ALI
Sbjct: 341 EAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALI 400

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           ++YA     +   Q FA TSK+    W +++   V N     A +LFRQ+    + P + 
Sbjct: 401 ELYALMGSTEDGMQCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEY 460

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           T++ ++ A A  A L     I  Y I+ G  +   V T  I +Y+K G++  A+++F  I
Sbjct: 461 TVSLMMSACADFAALSSGEQIQGYAIKSGIDAFTSVKTSSISMYAKSGNMPLANQVF--I 518

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
            +++ D+  +S +I+    HG    A+++F+ M   G++PN+  F   L AC HGGL+ +
Sbjct: 519 EVQNPDVATYSAMISSLAQHGSANEALNIFESMKTHGIKPNQQAFLGVLIACCHGGLVTQ 578

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           GL  F  M  +++      H+TC+VDLLGR GRL +A +LI +   +     W ALL +C
Sbjct: 579 GLKYFQCMKNDYRINPNEKHFTCLVDLLGRTGRLSDAENLILSSGFQDHPVTWRALLSSC 638

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
            ++ +  +G+  A+ L ELEPE  G+YVLL  +Y+       AE VR++M ++G++K PA
Sbjct: 639 RVYKDSVIGKRVAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRDRGVKKEPA 698

Query: 656 HSLIEVRN 663
            S I + N
Sbjct: 699 LSWIVIGN 706



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 155/577 (26%), Positives = 282/577 (48%), Gaps = 49/577 (8%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           D+  Y I+ +         LG   HG ++ +  +   ++ N L+ MY    E+  AR++F
Sbjct: 46  DSEGYKILFQTAAKSGSVVLGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELGFARQLF 105

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           D M E +++S+N+LISGY +  + ++A+ +F    ++ ++ D  +    L  CG   +++
Sbjct: 106 DRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLD 165

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
           +G ++H LV    L + +   N L+DMY KCG +++A  +FDR  ERD V+W S+I+GY 
Sbjct: 166 LGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDERDQVSWNSLISGYV 225

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS---SLYYLKRGRSLHAWTIKQNLEC 346
             G     L L   M  +G+   +  +GS+L AC    +  ++++G ++H +T K  +E 
Sbjct: 226 RVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKGMAIHCYTAKLGMEF 285

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVH-----NGLARKAVEL 401
           +++V TAL+DMYAK   +K + ++F+    K  V +NA+++G +      +  + +A +L
Sbjct: 286 DIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASSEAFKL 345

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
           F  M    +EP+ +T + +L A +    L+    IH  + +  F S   + + LI++Y+ 
Sbjct: 346 FMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYAL 405

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
            GS E   + F+      +DI  W+ +I  +  +   E+A  LF+++  S ++P E T +
Sbjct: 406 MGSTEDGMQCFA--STSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVS 463

Query: 522 SALHACS-----------HGGLLDEGLDLF---------------NFMLENH-----QTC 550
             + AC+            G  +  G+D F               N  L N      Q  
Sbjct: 464 LMMSACADFAALSSGEQIQGYAIKSGIDAFTSVKTSSISMYAKSGNMPLANQVFIEVQNP 523

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMP---LKPTHAVWGALLGACVIHGNVELGEVA 607
             A  Y+ ++  L + G  +EA ++  +M    +KP    +  +L AC   G V  G   
Sbjct: 524 DVAT-YSAMISSLAQHGSANEALNIFESMKTHGIKPNQQAFLGVLIACCHGGLVTQGLKY 582

Query: 608 AKWL---FELEPENPGNYVLLSKLYSAVRRWKDAENV 641
            + +   + + P N  ++  L  L     R  DAEN+
Sbjct: 583 FQCMKNDYRINP-NEKHFTCLVDLLGRTGRLSDAENL 618


>gi|302793632|ref|XP_002978581.1| hypothetical protein SELMODRAFT_109016 [Selaginella moellendorffii]
 gi|300153930|gb|EFJ20567.1| hypothetical protein SELMODRAFT_109016 [Selaginella moellendorffii]
          Length = 785

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 190/596 (31%), Positives = 332/596 (55%), Gaps = 9/596 (1%)

Query: 41  TSGPLFTHLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKM 97
           +S  + T L ++L+  YG    + + R +F  M ER    +N ++  Y Q+G   +++ +
Sbjct: 190 SSSAMETPLCNALITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLL 249

Query: 98  FLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYM 157
           +  ML+ G   PD  T+  ++              +H  ++ +G  ++  +G  L+AMY 
Sbjct: 250 YQLMLQEG-CKPDKVTFVALLTMSNGPEALTEVKLVHSHIVESGVSINIALGTALVAMYS 308

Query: 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVS 217
               ++  R +F+ M + +V+SWN +++ Y K+   ++A+ + ++M   GV+PD  + V 
Sbjct: 309 KCESLEDTRWLFEKMPQRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVG 368

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           +L  C    ++++GR +H  +A GR   ++  WN+L++MY +CG V +A +VFD + +R+
Sbjct: 369 LLNVCTGSADLKLGRKVHGWIAEGRCEADLILWNSLLNMYGRCGEVEQAEMVFDGILQRN 428

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
           V++WT+M+  Y+       AL LF  +   GV+P  +T    L AC     L +GR +H+
Sbjct: 429 VISWTAMLTAYSRQNRQDMALLLFHAIHLSGVKPTCITFLEALDACVGAEALDKGRLVHS 488

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLAR 396
             ++   + +V + +AL+ MY +C  ++ +   F  T  +K  V W+A++A  V +G  R
Sbjct: 489 CAVQSGNDIDVSLGSALVAMYGRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDR 548

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF-LSVVEVSTGL 455
           + ++  R M  + ++ + AT  S L A + LADL++   IH Y+    F      V+  L
Sbjct: 549 EGLQHLRFMQQQGLDMSPATFASTLSACSNLADLREGKRIHSYVRERRFDTEAATVTNSL 608

Query: 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP 515
           + +Y KCGSL+ A ++F     + +D + W+ II+GY  H     AV LF  M Q GV P
Sbjct: 609 VTMYGKCGSLDCAREVFE--TSRRQDTICWNAIISGYAQHSQTRDAVELFHRMQQEGVAP 666

Query: 516 NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDL 575
           + VTF   L  CSHGGLLDEG+  +  M+E     ++ D+Y C++DLLGRAG+L EA + 
Sbjct: 667 DPVTFVCILSVCSHGGLLDEGVYAYASMVELGLEPTQ-DNYACVIDLLGRAGKLQEAEEF 725

Query: 576 IRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSA 631
           I+++  +P      +LL +C  HG+V+ G  AA+ + E++P +   +V+LS +YSA
Sbjct: 726 IQSLGTRPAIETLTSLLSSCKSHGDVQRGRRAAEGIMEMDPRSSSAHVVLSSIYSA 781



 Score =  256 bits (654), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 150/544 (27%), Positives = 276/544 (50%), Gaps = 4/544 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V + + +FD M  R+   +  ++  +A       + K+F  ++ L  +  +  TY  +
Sbjct: 110 GSVDDAKRVFDAMPARNVITWTAMIGAHAVTSLEQ-AFKVFR-LMELEGFKSNFVTYVTL 167

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           ++AC+   + ++GI LH R + +   M+T + N LI MY   G ++ AR +F +M E  +
Sbjct: 168 VQACSKPEFLEVGIILHMRSVESSSAMETPLCNALITMYGRCGRLEDARAIFSSMVERDI 227

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           ++WN LI+ Y ++ + +EA++++  ML+ G +PD  + V++L      + +   +++H  
Sbjct: 228 IAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTFVALLTMSNGPEALTEVKLVHSH 287

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +    +  NIA   ALV MY KC S+ + R +F++M +R+V++W  M+  YA +G  R A
Sbjct: 288 IVESGVSINIALGTALVAMYSKCESLEDTRWLFEKMPQRNVISWNVMVTAYAKHGLGRKA 347

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + + + MQ +GV+P+++T   LL+ C+    LK GR +H W  +   E ++I+  +L++M
Sbjct: 348 VQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKLGRKVHGWIAEGRCEADLILWNSLLNM 407

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y +C  V+ +  VF    ++  + W A+L           A+ LF  + +  V+P   T 
Sbjct: 408 YGRCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQDMALLLFHAIHLSGVKPTCITF 467

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
              L A      L +   +H   ++ G    V + + L+ +Y +CGS+  A   F +  +
Sbjct: 468 LEALDACVGAEALDKGRLVHSCAVQSGNDIDVSLGSALVAMYGRCGSIRDAKACFDDTEV 527

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
           + K+ V WS +IA +  HG     +   + M Q G+  +  TF S L ACS+   L EG 
Sbjct: 528 R-KNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQGLDMSPATFASTLSACSNLADLREGK 586

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
            + +++ E       A     +V + G+ G LD A ++  T   + T   W A++     
Sbjct: 587 RIHSYVRERRFDTEAATVTNSLVTMYGKCGSLDCAREVFETSRRQDT-ICWNAIISGYAQ 645

Query: 598 HGNV 601
           H   
Sbjct: 646 HSQT 649



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 139/529 (26%), Positives = 260/529 (49%), Gaps = 9/529 (1%)

Query: 76  FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHG 135
           FL N ++  Y +  +  D+ + F  M     Y  + YT+  +I  C       L I L  
Sbjct: 31  FLGNHLIHTYGKCHSLDDAWETFERM----SYK-NVYTWTAIIGVCAQHHCHSLAIILLR 85

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
           ++L+ G   D       + MY + G V  A++VFDAM   +V++W  +I  +   +  ++
Sbjct: 86  QMLLEGVKPDNITLLAALTMYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHAVTSL-EQ 144

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           A  VF  M   G + +  + V+++ AC   + +E+G ++H               NAL+ 
Sbjct: 145 AFKVFRLMELEGFKSNFVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCNALIT 204

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           MY +CG + +AR +F  M ERD++ W ++I  Y  +G V  A+ L+QLM  EG +P+ +T
Sbjct: 205 MYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVT 264

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
             +LL+  +    L   + +H+  ++  +   + + TAL+ MY+KC  ++ +  +F +  
Sbjct: 265 FVALLTMSNGPEALTEVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFEKMP 324

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
           ++  + WN ++     +GL RKAV++   M ++ V+P++ T   LL      ADL+    
Sbjct: 325 QRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKLGRK 384

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           +H ++      + + +   L+++Y +CG +E A  +F    I  ++++ W+ ++  Y   
Sbjct: 385 VHGWIAEGRCEADLILWNSLLNMYGRCGEVEQAEMVFD--GILQRNVISWTAMLTAYSRQ 442

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
              + A+ LF  +  SGV+P  +TF  AL AC     LD+G  + +  +++         
Sbjct: 443 NRQDMALLLFHAIHLSGVKPTCITFLEALDACVGAEALDKGRLVHSCAVQSGNDID-VSL 501

Query: 556 YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
            + +V + GR G + +A        ++  H  W A++ A V HG    G
Sbjct: 502 GSALVAMYGRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDREG 550



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 129/480 (26%), Positives = 232/480 (48%), Gaps = 44/480 (9%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           +++AC  +    +   LH +++    D   F+GN LI  Y     +  A + F+ M   +
Sbjct: 1   LLQACPKVKALDVARRLHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMSYKN 60

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V +W  +I    ++     A+++   ML  GV+PD                         
Sbjct: 61  VYTWTAIIGVCAQHHCHSLAIILLRQMLLEGVKPD------------------------- 95

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
                    NI    AL  MY  CGSV++A+ VFD M  R+V+TWT+MI  +A+   +  
Sbjct: 96  ---------NITLLAALT-MYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHAVTS-LEQ 144

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A  +F+LM+ EG + N +T  +L+ ACS   +L+ G  LH  +++ +   E  +  ALI 
Sbjct: 145 AFKVFRLMELEGFKSNFVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCNALIT 204

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY +C  ++ +  +F+   ++  + WNA++     +G   +AV L++ ML E  +P+  T
Sbjct: 205 MYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVT 264

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
             +LL        L +   +H +++  G    + + T L+ +YSKC SLE    +F ++P
Sbjct: 265 FVALLTMSNGPEALTEVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFEKMP 324

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
              ++++ W+V++  Y  HG G  AV + + M   GV+P+ VT    L+ C+    L  G
Sbjct: 325 --QRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKLG 382

Query: 537 LDLFNFMLENHQTCSRAD--HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
             +  ++ E       AD   +  ++++ GR G +++A +++    L+     W A+L A
Sbjct: 383 RKVHGWIAEGR---CEADLILWNSLLNMYGRCGEVEQA-EMVFDGILQRNVISWTAMLTA 438



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 132/286 (46%), Gaps = 44/286 (15%)

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           LL AC  +  L   R LH+  ++ +L+  V +   LI  Y KC+ +  +++ F R S K 
Sbjct: 1   LLQACPKVKALDVARRLHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMSYKN 60

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
              W AI+  C  +     A+ L RQML+E V+P++ TL + L                 
Sbjct: 61  VYTWTAIIGVCAQHHCHSLAIILLRQMLLEGVKPDNITLLAALT---------------- 104

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
                              +Y  CGS++ A ++F  +P   ++++ W+ +I  + +    
Sbjct: 105 -------------------MYGSCGSVDDAKRVFDAMPA--RNVITWTAMIGAHAVTSL- 142

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
           E A  +F+ M   G + N VT+ + + ACS    L+ G+ L    + + ++ S  +   C
Sbjct: 143 EQAFKVFRLMELEGFKSNFVTYVTLVQACSKPEFLEVGIILH---MRSVESSSAMETPLC 199

Query: 559 --IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
             ++ + GR GRL++A  +  +M  +   A W AL+     HG+VE
Sbjct: 200 NALITMYGRCGRLEDARAIFSSMVERDIIA-WNALITEYGQHGHVE 244


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 197/538 (36%), Positives = 297/538 (55%), Gaps = 8/538 (1%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G+ LHG +   GF  DT +GN LI MY+  GE+  A +VF  M + +VVSW  L+ G+ +
Sbjct: 23  GVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLR 82

Query: 190 NAYAKEALVVFDWM-LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           +  A   L +   M   S   P+  ++ + L AC  + +   G  IH L       ++  
Sbjct: 83  HGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDV 142

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNALGLFQLMQ-F 306
             ++LV +Y K G + +AR VFD       + TW +M++GYA  G  R+AL +F+ M+  
Sbjct: 143 VASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRH 202

Query: 307 EGV-RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC--EVIVETALIDMYAKCNL 363
           EG  +P+  T  SLL ACS L   + G  +HA             I+  AL+DMY KC  
Sbjct: 203 EGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRR 262

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           + ++ QVF R  +K  + W A++ G    G   +A+ELFR+       P+   L+S++  
Sbjct: 263 LPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGV 322

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
            A  A ++Q   +HCY I+    + V     ++D+Y KCG  + A ++F E+  +  ++V
Sbjct: 323 LADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREM--RAPNVV 380

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ ++ G G HG G  AV+LF+EM   GV+P+EVT+ + L ACSH GL+DE    F+ +
Sbjct: 381 SWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCI 440

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
             +     +A+HY C+VDLLGRAG L EA DLIRTMP++PT  VW  LL AC +H +V +
Sbjct: 441 RRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAV 500

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           G  A   L  ++ +NP NYV LS + +    W++   VRD M  +GL+K    S +EV
Sbjct: 501 GREAGDVLLAMDGDNPVNYVTLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVEV 558



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 136/492 (27%), Positives = 235/492 (47%), Gaps = 13/492 (2%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEM 70
           ++  L++  A + S+ G  QLH  I   G    T L ++L+  Y   G +     +F  M
Sbjct: 6   MIAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGM 65

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
            +R+   +  +M  + ++G +   L++   M    E  P+ YT    +KAC  +     G
Sbjct: 66  RDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAG 125

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD-AMWEHSVVSWNTLISGYFK 189
           + +HG  +  G+     V + L+ +Y   G +  AR+VFD A     + +WN ++SGY  
Sbjct: 126 VGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAH 185

Query: 190 NAYAKEALVVFDWMLK--SGVEPDCASVVSVLPACGYLKEIEMGRMIHELV--AGGRLGK 245
             + ++AL+VF  M +     +PD  +  S+L AC  L     G  +H  +  +G     
Sbjct: 186 AGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTAS 245

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           N     ALVDMYVKC  +  A  VF+R+  ++V+ WT+++ G+A  G V  AL LF+   
Sbjct: 246 NAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFW 305

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
             G RP+S  + S++   +    +++GR +H + IK     +V    +++DMY KC L  
Sbjct: 306 RSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPD 365

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA-- 423
            + ++F        V W  ++ G   +GL R+AV LF +M    VEP++ T  +LL A  
Sbjct: 366 EAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACS 425

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
           +A L D +      C           E    ++D+  + G L  A  +   +P+ +  + 
Sbjct: 426 HAGLVD-ECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPM-EPTVG 483

Query: 484 VWSVIIAGYGMH 495
           VW  +++   +H
Sbjct: 484 VWQTLLSACRVH 495



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 199/424 (46%), Gaps = 20/424 (4%)

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           +  +L A      +  G  +H  +     G +    N L+DMYVKCG ++ A  VF  M 
Sbjct: 7   IAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMR 66

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKRGR 333
           +R+VV+WT+++ G+  +GD    L L   M+      PN  T+ + L AC  +     G 
Sbjct: 67  DRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGV 126

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP-WNAILAGCVHN 392
            +H   ++   +   +V ++L+ +Y+K   +  + +VF        +  WNA+++G  H 
Sbjct: 127 GIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHA 186

Query: 393 GLARKAVELFRQMLVEVV--EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
           G  R A+ +FR+M       +P++ T  SLL A + L   ++   +H  +   GF +   
Sbjct: 187 GHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASN 246

Query: 451 --VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             ++  L+D+Y KC  L  A ++F    ++ K+++ W+ ++ G+   G    A+ LF+  
Sbjct: 247 AILAGALVDMYVKCRRLPVAMQVFER--LERKNVIQWTAVVVGHAQEGQVTEALELFRRF 304

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
            +SG +P+    +S +   +   L+++G  +  + +++  T +       IVD+  + G 
Sbjct: 305 WRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKD-PTGTDVSAGNSIVDMYLKCGL 363

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE------LEPENPGNY 622
            DEA  + R M   P    W  ++     HG   LG  A   LFE      +EP+     
Sbjct: 364 PDEAERMFREMR-APNVVSWTTMVNGLGKHG---LGREAVA-LFEEMRAGGVEPDEVTYL 418

Query: 623 VLLS 626
            LLS
Sbjct: 419 ALLS 422


>gi|449460752|ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Cucumis sativus]
          Length = 784

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 212/651 (32%), Positives = 343/651 (52%), Gaps = 11/651 (1%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITS--GPLFTHLRSSLVRAYGHVS 61
           P+  T+P       +L+           T +L  F+  S  G  F ++ S      GHV 
Sbjct: 136 PNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAIGSSFIYMYSKC----GHVE 191

Query: 62  NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC 121
           +  I+F E++ +    +  ++  Y QN  S   LK    M R+G   P+  T     +AC
Sbjct: 192 SASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGG-TPNYKTIGSGFQAC 250

Query: 122 TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWN 181
            DL     G  LHG  L  GF     V + +++MY   G  + A + F  + +  ++SW 
Sbjct: 251 VDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQKDLISWT 310

Query: 182 TLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG 241
           ++I+ + K     E L +F  M  S + PD   +  +L   G    I  G+  H  +   
Sbjct: 311 SIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQ 370

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
               +    NAL+ MY K G +  A  +F     +    W++MI GY+  G     +   
Sbjct: 371 CCALSGITHNALLSMYCKFGHLGTANKIFHSF-HKSSEDWSTMILGYSNMGQKEKCISFL 429

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
           + M   G  P+  ++ S++S+CS +  +  GRS+H + IK ++   V V  +L+DMY K 
Sbjct: 430 REMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIENVSVANSLMDMYGKS 489

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
             V  ++++F RT ++  + WN +++    +G+  +A+ LF +M+ E V PN  T   +L
Sbjct: 490 GHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVL 549

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            A A LA L +   IH Y+   GF S + + T LID+Y+KCG LE++ K+F+    +++D
Sbjct: 550 SACAHLASLDEGEKIHQYIKENGFESNITIRTALIDMYAKCGELETSRKLFN--STEERD 607

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           +++W+V+I+ YGMHGH E+A+ +F+ M +S ++PN  TF S L AC+H G + EG  LF+
Sbjct: 608 VILWNVMISNYGMHGHVESAMEIFQLMEESNIKPNAQTFLSLLSACNHTGHVLEGRHLFD 667

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            M + +       HY  I+DLLGR+G L+ A  L+ +MP+ P   VWG+LL AC IH   
Sbjct: 668 RM-QKYGIEPSLKHYASIIDLLGRSGSLEAAEALVLSMPITPDGTVWGSLLSACKIHNEF 726

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
           E+G   A++  E +P+N G Y++LS LYS + RW + E VRD+M ++G+ K
Sbjct: 727 EVGVRLARYAIESDPKNDGYYIILSDLYSCLGRWDEVEKVRDMMKKRGVEK 777



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 167/634 (26%), Positives = 301/634 (47%), Gaps = 22/634 (3%)

Query: 34  QLHAFIITSGP---LFTHLRSSLVRAYGHVSNVRI-LFDEMSERSSFLYNTVMKMYAQNG 89
           Q H+ IIT+G    +F   +     AY         LF  +  +  FL+N++++ +  NG
Sbjct: 58  QFHSLIITTGNSNNVFFATKLMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQSHFSNG 117

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG-FDMDTFV 148
               +   +L M R     P+ +T P+V+  C +L     G+ +HG     G F  ++ +
Sbjct: 118 DYQRAFDFYLQM-RASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAI 176

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           G+  I MY   G V++A  +F  +    VV+W  LI GY +N  +   L     M + G 
Sbjct: 177 GSSFIYMYSKCGHVESASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGG 236

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHEL-VAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
            P+  ++ S   AC  L  +  G+ +H L +  G L   +   + ++ MY +CGS  EA 
Sbjct: 237 TPNYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVK-STILSMYSRCGSPEEAY 295

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
             F ++ ++D+++WTS+I  ++  G +   L LF  MQ   + P+ + I  +L    +  
Sbjct: 296 RCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSD 355

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            +  G++ HA  +KQ      I   AL+ MY K   +  + ++F  +  K +  W+ ++ 
Sbjct: 356 RIFEGKAFHARILKQCCALSGITHNALLSMYCKFGHLGTANKIF-HSFHKSSEDWSTMIL 414

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G  + G   K +   R+ML+   EP+  +L S++ + + +  +    +IHCY I+   + 
Sbjct: 415 GYSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIE 474

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            V V+  L+D+Y K G + +  +IF       +D++ W+ +I+ Y   G    A+ LF +
Sbjct: 475 NVSVANSLMDMYGKSGHVTATWRIFHRTL--QRDVISWNTLISSYKQSGILAEAIILFDK 532

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           MV+  V PN+VT    L AC+H   LDEG  +  ++ EN    S     T ++D+  + G
Sbjct: 533 MVKEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIKENGFE-SNITIRTALIDMYAKCG 591

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN---PGNYVL 624
            L+ +  L  +   +    +W  ++    +HG+VE    +A  +F+L  E+   P     
Sbjct: 592 ELETSRKLFNSTEERDV-ILWNVMISNYGMHGHVE----SAMEIFQLMEESNIKPNAQTF 646

Query: 625 LSKLYSAVRRWK--DAENVRDVMDEKGLRKAPAH 656
           LS L +        +  ++ D M + G+  +  H
Sbjct: 647 LSLLSACNHTGHVLEGRHLFDRMQKYGIEPSLKH 680



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 121/475 (25%), Positives = 220/475 (46%), Gaps = 13/475 (2%)

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           P+N  +    K   +L ++ L +  H  ++ TG   + F    L+A Y    +   +  +
Sbjct: 38  PNNCLHSFFSKP--NLTFQSL-LQFHSLIITTGNSNNVFFATKLMAFYAYHRKPAFSTHL 94

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           F  +    +  WN++I  +F N   + A   +  M  S   P+  +V  V+  C  L   
Sbjct: 95  FRLIHSKDIFLWNSIIQSHFSNGDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMMF 154

Query: 229 EMGRMIHELVAG-GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
             G  IH L +  G    N A  ++ + MY KCG V  A ++F  ++ +DVVTWT++I G
Sbjct: 155 NHGMNIHGLTSKLGLFVGNSAIGSSFIYMYSKCGHVESASIMFSEITVKDVVTWTALIVG 214

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y  N +    L     M   G  PN  TIGS   AC  L  L  G+ LH   +K    C 
Sbjct: 215 YVQNNESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCF 274

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
            +V++ ++ MY++C   + +++ F +  +K  + W +I+A     GL  + + LF +M  
Sbjct: 275 EVVKSTILSMYSRCGSPEEAYRCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQA 334

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
             + P++  ++ +L  +     + +    H  +++            L+ +Y K G L +
Sbjct: 335 SEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQCCALSGITHNALLSMYCKFGHLGT 394

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A+KIF       +D   WS +I GY   G  E  +S  +EM+  G +P+  +  S + +C
Sbjct: 395 ANKIFHSFHKSSED---WSTMILGYSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSC 451

Query: 528 SHGGLLDEGLDLFNFMLENH--QTCSRADHYTCIVDLLGRAGRLDEAYDLI-RTM 579
           S  G ++ G  +  + ++N   +  S A+    ++D+ G++G +   + +  RT+
Sbjct: 452 SQVGAINIGRSIHCYAIKNSIIENVSVAN---SLMDMYGKSGHVTATWRIFHRTL 503


>gi|449484072|ref|XP_004156776.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Cucumis sativus]
          Length = 754

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 212/651 (32%), Positives = 343/651 (52%), Gaps = 11/651 (1%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITS--GPLFTHLRSSLVRAYGHVS 61
           P+  T+P       +L+           T +L  F+  S  G  F ++ S      GHV 
Sbjct: 106 PNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAIGSSFIYMYSKC----GHVE 161

Query: 62  NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC 121
           +  I+F E++ +    +  ++  Y QN  S   LK    M R+G   P+  T     +AC
Sbjct: 162 SASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGG-TPNYKTIGSGFQAC 220

Query: 122 TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWN 181
            DL     G  LHG  L  GF     V + +++MY   G  + A + F  + +  ++SW 
Sbjct: 221 VDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQKDLISWT 280

Query: 182 TLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG 241
           ++I+ + K     E L +F  M  S + PD   +  +L   G    I  G+  H  +   
Sbjct: 281 SIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQ 340

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
               +    NAL+ MY K G +  A  +F     +    W++MI GY+  G     +   
Sbjct: 341 CCALSGITHNALLSMYCKFGHLGTANKIFHSF-HKSSEDWSTMILGYSNMGQKEKCISFL 399

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
           + M   G  P+  ++ S++S+CS +  +  GRS+H + IK ++   V V  +L+DMY K 
Sbjct: 400 REMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIENVSVANSLMDMYGKS 459

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
             V  ++++F RT ++  + WN +++    +G+  +A+ LF +M+ E V PN  T   +L
Sbjct: 460 GHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVL 519

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            A A LA L +   IH Y+   GF S + + T LID+Y+KCG LE++ K+F+    +++D
Sbjct: 520 SACAHLASLDEGEKIHQYIKENGFESNITIRTALIDMYAKCGELETSRKLFN--STEERD 577

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           +++W+V+I+ YGMHGH E+A+ +F+ M +S ++PN  TF S L AC+H G + EG  LF+
Sbjct: 578 VILWNVMISNYGMHGHVESAMEIFQLMEESNIKPNAQTFLSLLSACNHTGHVLEGRHLFD 637

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            M + +       HY  I+DLLGR+G L+ A  L+ +MP+ P   VWG+LL AC IH   
Sbjct: 638 RM-QKYGIEPSLKHYASIIDLLGRSGSLEAAEALVLSMPITPDGTVWGSLLSACKIHNEF 696

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
           E+G   A++  E +P+N G Y++LS LYS + RW + E VRD+M ++G+ K
Sbjct: 697 EVGVRLARYAIESDPKNDGYYIILSDLYSCLGRWDEVEKVRDMMKKRGVEK 747



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 160/599 (26%), Positives = 289/599 (48%), Gaps = 20/599 (3%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LF  +  +  FL+N++++ +  NG    +   +L M R     P+ +T P+V+  C +L 
Sbjct: 64  LFRLIHSKDIFLWNSIIQSHFSNGDYQRAFDFYLQM-RASSSLPNQFTVPMVVSTCAELM 122

Query: 126 WRKLGIALHGRVLITG-FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
               G+ +HG     G F  ++ +G+  I MY   G V++A  +F  +    VV+W  LI
Sbjct: 123 MFNHGMNIHGLTSKLGLFVGNSAIGSSFIYMYSKCGHVESASIMFSEITVKDVVTWTALI 182

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-VAGGRL 243
            GY +N  +   L     M + G  P+  ++ S   AC  L  +  G+ +H L +  G L
Sbjct: 183 VGYVQNNESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDLDALVEGKCLHGLALKNGFL 242

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
              +   + ++ MY +CGS  EA   F ++ ++D+++WTS+I  ++  G +   L LF  
Sbjct: 243 CFEVVK-STILSMYSRCGSPEEAYRCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWE 301

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           MQ   + P+ + I  +L    +   +  G++ HA  +KQ      I   AL+ MY K   
Sbjct: 302 MQASEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQCCALSGITHNALLSMYCKFGH 361

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           +  + ++F  +  K +  W+ ++ G  + G   K +   R+ML+   EP+  +L S++ +
Sbjct: 362 LGTANKIF-HSFHKSSEDWSTMILGYSNMGQKEKCISFLREMLLLGREPDLNSLVSVISS 420

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
            + +  +    +IHCY I+   +  V V+  L+D+Y K G + +  +IF       +D++
Sbjct: 421 CSQVGAINIGRSIHCYAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTL--QRDVI 478

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ +I+ Y   G    A+ LF +MV+  V PN+VT    L AC+H   LDEG  +  ++
Sbjct: 479 SWNTLISSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYI 538

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
            EN    S     T ++D+  + G L+ +  L  +   +    +W  ++    +HG+VE 
Sbjct: 539 KENGFE-SNITIRTALIDMYAKCGELETSRKLFNSTEERDV-ILWNVMISNYGMHGHVE- 595

Query: 604 GEVAAKWLFELEPEN---PGNYVLLSKLYSAVRRWK---DAENVRDVMDEKGLRKAPAH 656
              +A  +F+L  E+   P     LS L SA        +  ++ D M + G+  +  H
Sbjct: 596 ---SAMEIFQLMEESNIKPNAQTFLS-LLSACNHTGHVLEGRHLFDRMQKYGIEPSLKH 650



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 209/451 (46%), Gaps = 10/451 (2%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
            H  ++ TG   + F    L+A Y    +   +  +F  +    +  WN++I  +F N  
Sbjct: 29  FHSLIITTGNSNNVFFATKLMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQSHFSNGD 88

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG-GRLGKNIAAWN 251
            + A   +  M  S   P+  +V  V+  C  L     G  IH L +  G    N A  +
Sbjct: 89  YQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAIGS 148

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           + + MY KCG V  A ++F  ++ +DVVTWT++I GY  N +    L     M   G  P
Sbjct: 149 SFIYMYSKCGHVESASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGGTP 208

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           N  TIGS   AC  L  L  G+ LH   +K    C  +V++ ++ MY++C   + +++ F
Sbjct: 209 NYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCF 268

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
            +  +K  + W +I+A     GL  + + LF +M    + P++  ++ +L  +     + 
Sbjct: 269 CKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIF 328

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           +    H  +++            L+ +Y K G L +A+KIF       +D   WS +I G
Sbjct: 329 EGKAFHARILKQCCALSGITHNALLSMYCKFGHLGTANKIFHSFHKSSED---WSTMILG 385

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH--QT 549
           Y   G  E  +S  +EM+  G +P+  +  S + +CS  G ++ G  +  + ++N   + 
Sbjct: 386 YSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIEN 445

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLI-RTM 579
            S A+    ++D+ G++G +   + +  RT+
Sbjct: 446 VSVANS---LMDMYGKSGHVTATWRIFHRTL 473


>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
          Length = 749

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 196/599 (32%), Positives = 321/599 (53%), Gaps = 7/599 (1%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           M  R+   + +V+  + QNG + D+L +F  MLR G    D +     ++ACT+L     
Sbjct: 95  MYGRNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGT-AADQFALGSAVRACTELGDVGT 153

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  +H   L +    D  V N L+ MY   G V     +F+ + +  ++SW ++I+G+ +
Sbjct: 154 GRQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQ 213

Query: 190 NAYAKEALVVFDWMLKSGVE-PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
             +  EAL VF  M+  G   P+     S   ACG +   E G  IH L    RL +++ 
Sbjct: 214 QGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLY 273

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
              +L DMY +C +++ AR+ F R+   D+V+W S++N Y++ G +  AL LF  M+  G
Sbjct: 274 VGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSG 333

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           +RP+ +T+  LL AC     L  GR +H++ +K  L+ +V V  +L+ MYA+C+ +  + 
Sbjct: 334 LRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLDGDVSVCNSLLSMYARCSDLSSAM 393

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP--NDATLNSLLPAYAI 426
            VF     +  V WN+IL  C  +    + ++LF   L+   EP  +  +LN++L A A 
Sbjct: 394 DVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFS--LLNKSEPSLDRISLNNVLSASAE 451

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           L   +    +H Y  + G +    +S  LID Y+KCGSL+ A ++F EI   ++D+  WS
Sbjct: 452 LGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLF-EIMGNNRDVFSWS 510

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            +I GY   G+ + A  LF  M   G++PN VTF   L ACS  G ++EG   ++ M   
Sbjct: 511 SLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPE 570

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
           +      +H +CIVDLL RAG+L EA + I  MP +P   +W  LL A  +H ++E+G+ 
Sbjct: 571 YGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKR 630

Query: 607 AAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           AA+ +  ++P +   YVLL  +Y+A   W +   ++  M   G++K+P  S ++++  L
Sbjct: 631 AAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLKGEL 689


>gi|357487403|ref|XP_003613989.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
 gi|355515324|gb|AES96947.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
          Length = 828

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 209/636 (32%), Positives = 349/636 (54%), Gaps = 13/636 (2%)

Query: 33  KQLHAFIITSGPLFTHLR---SSLVRAYGHVSNVR---ILFDEMSERSSFLYNTVMKMYA 86
           ++LH  I+ SG  F   R   +SLV  YG +  +R    +FDEM  R   L+++++  Y 
Sbjct: 122 RKLHGRILKSG--FCEDRVIGTSLVGMYGELCFLRDAKKVFDEMCVRDLVLWSSIISCYV 179

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           +NG   + L+MF  M+  G   PD+     V +AC  +   +L  ++HG V+  G   D 
Sbjct: 180 ENGVYREGLEMFRSMICEG-IRPDSVMLLSVAEACGKIGCLRLAKSVHGYVMREGMVGDG 238

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
            + N LI MY   G +  A+++F+ + + S   W ++IS Y +N   +EAL VF  M  S
Sbjct: 239 SLSNSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTSMISAYNQNECFEEALDVFIKMQDS 298

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG-KNIAAWNALVDMYVKCGSVNE 265
            VEP+  +++SVL +C  L  ++ G+ +H  V    +G   +    AL+D Y  C  ++ 
Sbjct: 299 EVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNAMGVTGLDLGPALIDFYSACWKMSS 358

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
              +   +   ++V+W ++I+ YA  G    A+  F  M  +G+ P+S ++ S +SA +S
Sbjct: 359 CEKLLHSIGNENIVSWNTLISFYAREGLNDEAMAFFACMVAKGIMPDSFSLASSISASAS 418

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
              ++ G+ +H   +K+    E  V+ +L+DMY+KC     ++ +F +   K  V WN +
Sbjct: 419 SGSIQFGQQIHGHVMKRGFFDE-FVQNSLMDMYSKCGFASSAYTIFNKIKHKSIVAWNCM 477

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           + G   NG++ +A+ LF +M    +E N  T  S + A + L  L +   IH  +I  G 
Sbjct: 478 ICGFSQNGISVEALSLFDEMFKNRLEINKVTFLSAIQACSNLGYLDKGKWIHHKIIVTGN 537

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
            + + + T L+D+Y+KCG L++A K+F  I   +K +V WS +IA +G+HG    A SLF
Sbjct: 538 QNDLYIDTALVDMYAKCGDLQTAQKVFDSIV--EKSVVSWSTMIAAHGIHGQINAATSLF 595

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
            +MV S ++PNEVTF + L AC H G + EG   FN M + +      +H+  IVDLL R
Sbjct: 596 HKMVLSNIKPNEVTFMNILSACRHAGSVKEGKFYFNTMRDYYGIVPNVEHFASIVDLLSR 655

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           AG ++ AY++I+++      ++WGALL  C I+G +++ E  A+ L  +  ++ G Y LL
Sbjct: 656 AGDINGAYEIIKSIRTPVAASIWGALLNGCRIYGRMDMIEYIAEELGGISTDDTGYYTLL 715

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           S +Y+    W ++  VR  M+  GL+K P +S +E+
Sbjct: 716 SNIYAEGGNWYESRKVRSKMEGMGLKKVPGYSTVEI 751



 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 188/612 (30%), Positives = 319/612 (52%), Gaps = 24/612 (3%)

Query: 34  QLHAFIITSGPLFTHLRSS-LVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           QLHA ++ +      L S+ L+ +Y   G + + R++F       SF+++ ++K +  N 
Sbjct: 19  QLHAHLVVTSLHNNPLASTKLLESYSQMGSLQSSRLVFYTHPSPDSFMFSVLIKCHLWNH 78

Query: 90  ASHDSLKMFLGMLRLGEYNPDN--YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
              + L +F   +++G     N  + YP VI+A T +    +G  LHGR+L +GF  D  
Sbjct: 79  LFREVLSLFNHHIQMGSKLTQNCAFLYPSVIRAVTGVGELIVGRKLHGRILKSGFCEDRV 138

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           +G  L+ MY     ++ A+KVFD M    +V W+++IS Y +N   +E L +F  M+  G
Sbjct: 139 IGTSLVGMYGELCFLRDAKKVFDEMCVRDLVLWSSIISCYVENGVYREGLEMFRSMICEG 198

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           + PD   ++SV  ACG +  + + + +H  V    +  + +  N+L+ MY +CG +  A+
Sbjct: 199 IRPDSVMLLSVAEACGKIGCLRLAKSVHGYVMREGMVGDGSLSNSLIVMYSQCGYLCRAK 258

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +F+ + +R    WTSMI+ Y  N     AL +F  MQ   V PN +T+ S+L++C+ L 
Sbjct: 259 RLFECIDDRSTSCWTSMISAYNQNECFEEALDVFIKMQDSEVEPNDVTMISVLNSCARLG 318

Query: 328 YLKRGRSLHAWTIKQNLECEVI-VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
            LK G+S+H + ++  +    + +  ALID Y+ C  +    ++      +  V WN ++
Sbjct: 319 RLKEGKSVHCFVLRNAMGVTGLDLGPALIDFYSACWKMSSCEKLLHSIGNENIVSWNTLI 378

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           +     GL  +A+  F  M+ + + P+  +L S + A A    +Q    IH ++++ GF 
Sbjct: 379 SFYAREGLNDEAMAFFACMVAKGIMPDSFSLASSISASASSGSIQFGQQIHGHVMKRGFF 438

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
               V   L+D+YSKCG   SA+ IF++  IK K IV W+ +I G+  +G    A+SLF 
Sbjct: 439 DEF-VQNSLMDMYSKCGFASSAYTIFNK--IKHKSIVAWNCMICGFSQNGISVEALSLFD 495

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLG 564
           EM ++ ++ N+VTF SA+ ACS+ G LD+G  + + ++    T ++ D Y  T +VD+  
Sbjct: 496 EMFKNRLEINKVTFLSAIQACSNLGYLDKGKWIHHKII---VTGNQNDLYIDTALVDMYA 552

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE---LEPENPGN 621
           + G L  A  +  ++  K     W  ++ A  IHG +     AA  LF    L    P N
Sbjct: 553 KCGDLQTAQKVFDSIVEKSV-VSWSTMIAAHGIHGQIN----AATSLFHKMVLSNIKP-N 606

Query: 622 YVLLSKLYSAVR 633
            V    + SA R
Sbjct: 607 EVTFMNILSACR 618



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 110/407 (27%), Positives = 214/407 (52%), Gaps = 9/407 (2%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           Y  + + C+ L  R+L   LH  +++T    +      L+  Y   G ++++R VF    
Sbjct: 4   YMPLFRTCSTL--RRL-TQLHAHLVVTSLHNNPLASTKLLESYSQMGSLQSSRLVFYTHP 60

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG--VEPDCASVV-SVLPACGYLKEIEM 230
                 ++ LI  +  N   +E L +F+  ++ G  +  +CA +  SV+ A   + E+ +
Sbjct: 61  SPDSFMFSVLIKCHLWNHLFREVLSLFNHHIQMGSKLTQNCAFLYPSVIRAVTGVGELIV 120

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
           GR +H  +      ++     +LV MY +   + +A+ VFD M  RD+V W+S+I+ Y  
Sbjct: 121 GRKLHGRILKSGFCEDRVIGTSLVGMYGELCFLRDAKKVFDEMCVRDLVLWSSIISCYVE 180

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           NG  R  L +F+ M  EG+RP+S+ + S+  AC  +  L+  +S+H + +++ +  +  +
Sbjct: 181 NGVYREGLEMFRSMICEGIRPDSVMLLSVAEACGKIGCLRLAKSVHGYVMREGMVGDGSL 240

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
             +LI MY++C  +  + ++F     + T  W ++++    N    +A+++F +M    V
Sbjct: 241 SNSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTSMISAYNQNECFEEALDVFIKMQDSEV 300

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF-LSVVEVSTGLIDIYSKCGSLESAH 469
           EPND T+ S+L + A L  L++  ++HC+++R    ++ +++   LID YS C  + S  
Sbjct: 301 EPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNAMGVTGLDLGPALIDFYSACWKMSSCE 360

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
           K+     I +++IV W+ +I+ Y   G  + A++ F  MV  G+ P+
Sbjct: 361 KLLH--SIGNENIVSWNTLISFYAREGLNDEAMAFFACMVAKGIMPD 405


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 218/639 (34%), Positives = 343/639 (53%), Gaps = 17/639 (2%)

Query: 33  KQLHAFIITSGPLF-THLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQN 88
           +QLH   I  G L    + +SLV  Y   SN    R +FDEM ER+   + T++  YA+N
Sbjct: 117 RQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARN 176

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
             + + L +F+ M   G   P+++T+   +    +      G+ +H  V+  G D    V
Sbjct: 177 SLNEEVLTLFMRMQDEGT-QPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPV 235

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N LI +Y+  G V+ AR +FD     SVV+WN++ISGY  N    EAL +F  M  + V
Sbjct: 236 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHV 295

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVA--GGRLGKNIAAWNALVDMYVKCGSVNEA 266
               +S  S++  C  LKE+     +H  V   G    +NI    AL+  Y KC ++ +A
Sbjct: 296 RLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRT--ALMVAYSKCMAMLDA 353

Query: 267 -RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
            RL  +     +VV+WT+MI+G+  N     A+GLF  M+ +GVRPN  T   +L+A   
Sbjct: 354 LRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPV 413

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           +        +HA  +K N E    V TAL+D Y K   V  + +VF+    K  V W+A+
Sbjct: 414 I----SPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAM 469

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP-AYAILADLQQAMNIHCYLIRYG 444
           LAG    G    A+++F ++    V+PN+ T +S+L    A  A + Q    H + I+  
Sbjct: 470 LAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSR 529

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
             S + VS+ L+ +Y+K G +ESA ++F     ++KD+V W+ +I+GY  HG    A+ +
Sbjct: 530 LDSSLCVSSALLTMYAKKGHIESAEEVFKRQ--REKDLVSWNSMISGYAQHGQAMKALDV 587

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           FKEM +  V+ + VTF     AC+H GL++EG   F+ M+ + +     +H +C+VDL  
Sbjct: 588 FKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYS 647

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
           RAG+L++A  +I  MP      +W  +L AC +H   ELG +AA+ +  + PE+   YVL
Sbjct: 648 RAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVL 707

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           LS +Y+    W++   VR +M+E+ ++K P +S IEV+N
Sbjct: 708 LSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKN 746



 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 172/561 (30%), Positives = 287/561 (51%), Gaps = 30/561 (5%)

Query: 54  VRAYGHVSNVRI-----LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN 108
           +  +G  S+ R+     LFD+  +R    Y +++  ++++G + ++ ++FL +  LG   
Sbjct: 36  IYCFGAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLG-ME 94

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
            D   +  V+K    L     G  LH + +  GF  D  VG  L+  YM     K  R V
Sbjct: 95  MDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNV 154

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228
           FD M E +VV+W TLISGY +N+  +E L +F  M   G +P+  +  + L   G L E 
Sbjct: 155 FDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAAL---GVLAEE 211

Query: 229 EMGR---MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
            +G     +H +V    L K I   N+L+++Y+KCG+V +AR++FD+   + VVTW SMI
Sbjct: 212 GVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMI 271

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           +GYA NG    ALG+F  M+   VR +  +  S++  C++L  L+    LH   +K    
Sbjct: 272 SGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFV 331

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELFRQ 404
            +  + TAL+  Y+KC  +  + ++F  T      V W A+++G + N    +AV LF +
Sbjct: 332 FDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSE 391

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           M  + V PN+ T + +L A  +++  +    +H  +++  +     V T L+D Y K G 
Sbjct: 392 MKRKGVRPNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGK 447

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           ++ A K+FS   I +KDIV WS ++AGY   G  E A+ +F E+ + GV+PNE TF+S L
Sbjct: 448 VDEAAKVFS--GIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSIL 505

Query: 525 HAC-SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL----GRAGRLDEAYDLIRTM 579
           + C +    + +G     F ++     SR D   C+   L     + G ++ A ++ +  
Sbjct: 506 NVCAATTASMGQGKQFHGFAIK-----SRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQ 560

Query: 580 PLKPTHAVWGALLGACVIHGN 600
             K     W +++     HG 
Sbjct: 561 REKDL-VSWNSMISGYAQHGQ 580


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 218/649 (33%), Positives = 337/649 (51%), Gaps = 86/649 (13%)

Query: 33  KQLHAFIITS---------GPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMK 83
           +QLHA II +           L  H   + +RA  H ++  +LF+     + F++ ++++
Sbjct: 18  RQLHAQIIHNSLHHHNYWVALLINH--CTRLRAPPHYTH--LLFNSTLNPNVFVFTSMLR 73

Query: 84  MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD 143
            Y+        + M+  M   G   PD + YPI+IK+         GI  H  VL  G  
Sbjct: 74  FYSHLQDHAKVVLMYEQMQGCG-VRPDAFVYPILIKSAG-----TGGIGFHAHVLKLGHG 127

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAM--WEHSVVSWNTLISGYFKNAYAKEALVVFD 201
            D FV N +I MY   G +  ARKVFD +  +E  V  WN ++SGY+K     +A  +FD
Sbjct: 128 SDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFD 187

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
                           V+P                        +N+  W A+V  Y K  
Sbjct: 188 ----------------VMPE-----------------------RNVITWTAMVTGYAKVK 208

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
            +  AR  FD M ER VV+W +M++GYA NG    AL LF  M   G+ P+  T  +++S
Sbjct: 209 DLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVIS 268

Query: 322 ACSSLYYLKRG---------RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           ACSS     RG         R+LH    ++ ++    V TAL+DMYAK   +  + ++F 
Sbjct: 269 ACSS-----RGDPCLAASLVRTLH----QKRIQLNCFVRTALLDMYAKFGDLDSARKLFN 319

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV-EVVEPNDATLNSLLPAYAILADLQ 431
               +  V WN+++AG   NG +  A+ELF++M+  + + P++ T+ S++ A   L  L+
Sbjct: 320 TMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALE 379

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               +  +L        +     +I +YS+CGS+E A ++F E+  +D  +V ++ +I+G
Sbjct: 380 LGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRD--VVSYNTLISG 437

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           +  HGHG  A++L   M + G++P+ VTF   L ACSH GLL+EG  +F  + +      
Sbjct: 438 FAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----P 492

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
             DHY C+VDLLGR G L++A   +  MP++P   V+G+LL A  IH  VELGE+AA  L
Sbjct: 493 AIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKL 552

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           FELEP+N GN++LLS +Y++  RWKD E +R+ M + G++K    S +E
Sbjct: 553 FELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVE 601



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 120/294 (40%), Gaps = 27/294 (9%)

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK----LSFQ 369
           L +GS+ S   +  +L   R LHA  I  +L         LI+    C  ++     +  
Sbjct: 2   LELGSIASRVGNFNHL---RQLHAQIIHNSLHHHNYWVALLIN---HCTRLRAPPHYTHL 55

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           +F  T       + ++L    H     K V ++ QM    V P DA +  +L    I + 
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRP-DAFVYPIL----IKSA 110

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
               +  H ++++ G  S   V   +ID+Y++ G +  A K+F EIP  ++ +  W+ ++
Sbjct: 111 GTGGIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMV 170

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           +GY        A  LF  M +  V    +T+T+ +   +    L+     F+ M E    
Sbjct: 171 SGYWKWESEGQAQWLFDVMPERNV----ITWTAMVTGYAKVKDLEAARRYFDCMPERSVV 226

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTM---PLKPTHAVWGALLGACVIHGN 600
                 +  ++    + G  +EA  L   M    ++P    W  ++ AC   G+
Sbjct: 227 S-----WNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGD 275


>gi|224106429|ref|XP_002314162.1| predicted protein [Populus trichocarpa]
 gi|222850570|gb|EEE88117.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 196/574 (34%), Positives = 318/574 (55%), Gaps = 7/574 (1%)

Query: 87  QNGASHDSLKMFLGMLRLGEY-NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
           QN +S     +     R G   NP  Y    ++  C       LGI  H  +L  GF  +
Sbjct: 46  QNTSSPVDSDLIAEFTRHGSLSNP--YFLNKIVSFCAKSGSFHLGIQAHSTILKLGFISN 103

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
            ++ + ++ MY   GE+ +AR +FD M + +VV+WN+LI GY      K A+ +F  MLK
Sbjct: 104 VYICSAVVDMYAKCGEISSARVLFDQMPQRTVVTWNSLIYGYLAVNCPKIAIELFIKMLK 163

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
           + +     SV S L  C  L+  E+G  +H L+    LG N+    +LVDMY KCG V++
Sbjct: 164 AAINVSAFSVSSCLAGCSQLEAREVGTQVHGLILKTGLGYNVVVGTSLVDMYSKCGDVDD 223

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           +RLVFD M  R+V+TWTSM+ GY+       A+ L + M  + +RPN +T  SLLS+ S 
Sbjct: 224 SRLVFDHMVNRNVITWTSMVTGYSQIEKPDEAMALVKEMVLQDLRPNCVTYNSLLSSFSG 283

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF-QVFARTSKKKTVPWNA 384
              L     +H   I+  LE  V +   L+ +Y+KC+     F +V +       + WNA
Sbjct: 284 PDCLSYCLQVHCCIIQLGLESNVYIAATLVTVYSKCSSSLEDFKKVCSVVMTCDNIAWNA 343

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           ++AG    G   +A+  F +M    ++ +  TL S++ A    + L++   +H  + R G
Sbjct: 344 VIAGYSKLGRHEEALRCFHEMKQAGIDIDSYTLTSVVGAIGNSSFLEEGKAMHALIHRTG 403

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
           ++S + V  GL+ +Y++CG++  + ++F    +++ D++ W+ ++  +  HG+G  AV L
Sbjct: 404 YISHLNVQNGLVSMYARCGAIGDSKRVF--WFMEEHDVISWNALLTAFAHHGYGREAVEL 461

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS-RADHYTCIVDLL 563
           F++M ++ ++PN  TF + L ACSH G +D+G++ F+ M  +      + +HY  +VD  
Sbjct: 462 FEQMRKTEIKPNSSTFLAVLCACSHVGFVDKGIEYFDTMKSDILLEPLKVEHYASLVDTF 521

Query: 564 GRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623
           GRAG L+EA   I +MP+ P  +V+ ALL A ++HGN E+   +AK L EL P +P  YV
Sbjct: 522 GRAGYLNEAEAFINSMPIVPAPSVYKALLSASLVHGNREIAARSAKKLLELWPNDPATYV 581

Query: 624 LLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           LLS + +    W DA ++R +M ++GLRK P +S
Sbjct: 582 LLSSVLTVDGNWDDAADLRKLMCDRGLRKKPGYS 615



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 137/536 (25%), Positives = 261/536 (48%), Gaps = 12/536 (2%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAY---GHVSNVRILFDEMSER 73
           K+V   A + S     Q H+ I+  G +   ++ S++V  Y   G +S+ R+LFD+M +R
Sbjct: 74  KIVSFCAKSGSFHLGIQAHSTILKLGFISNVYICSAVVDMYAKCGEISSARVLFDQMPQR 133

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           +   +N+++  Y        ++++F+ ML+    N   ++    +  C+ L  R++G  +
Sbjct: 134 TVVTWNSLIYGYLAVNCPKIAIELFIKMLK-AAINVSAFSVSSCLAGCSQLEAREVGTQV 192

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           HG +L TG   +  VG  L+ MY   G+V  +R VFD M   +V++W ++++GY +    
Sbjct: 193 HGLILKTGLGYNVVVGTSLVDMYSKCGDVDDSRLVFDHMVNRNVITWTSMVTGYSQIEKP 252

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
            EA+ +   M+   + P+C +  S+L +      +     +H  +    L  N+     L
Sbjct: 253 DEAMALVKEMVLQDLRPNCVTYNSLLSSFSGPDCLSYCLQVHCCIIQLGLESNVYIAATL 312

Query: 254 VDMYVKC-GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           V +Y KC  S+ + + V   +   D + W ++I GY+  G    AL  F  M+  G+  +
Sbjct: 313 VTVYSKCSSSLEDFKKVCSVVMTCDNIAWNAVIAGYSKLGRHEEALRCFHEMKQAGIDID 372

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           S T+ S++ A  +  +L+ G+++HA   +      + V+  L+ MYA+C  +  S +VF 
Sbjct: 373 SYTLTSVVGAIGNSSFLEEGKAMHALIHRTGYISHLNVQNGLVSMYARCGAIGDSKRVFW 432

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
              +   + WNA+L    H+G  R+AVELF QM    ++PN +T  ++L A + +  + +
Sbjct: 433 FMEEHDVISWNALLTAFAHHGYGREAVELFEQMRKTEIKPNSSTFLAVLCACSHVGFVDK 492

Query: 433 AMNIHCYLIRYGFLSVVEVS--TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
            +     +     L  ++V     L+D + + G L  A    + +PI      V+  +++
Sbjct: 493 GIEYFDTMKSDILLEPLKVEHYASLVDTFGRAGYLNEAEAFINSMPIVPAP-SVYKALLS 551

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNE-VTFTSALHACSHGGLLDEGLDLFNFMLE 545
              +HG+ E A    K++++  + PN+  T+       +  G  D+  DL   M +
Sbjct: 552 ASLVHGNREIAARSAKKLLE--LWPNDPATYVLLSSVLTVDGNWDDAADLRKLMCD 605


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 191/543 (35%), Positives = 300/543 (55%), Gaps = 33/543 (6%)

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
            I   +N   ++ AR+VFD +         + I+ Y + +   EAL  F  M ++ V   
Sbjct: 36  FIRRLLNASFIQYARQVFDQIPHPDQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIV 95

Query: 212 CASVVSVLPACGYLKEIEMGRMIH-------------------------------ELVAG 240
           C ++  +  +C  L  I++G+ +H                               EL+  
Sbjct: 96  CFTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFD 155

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
           G L K+  A+N L+  Y + G V  AR +FD+M +R +V+W +MI+ YA NGD      +
Sbjct: 156 GILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWII 215

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
           FQ MQ E   PN +T+ ++LS C+ L  L+ G  +      +NL   +IV TA+++MY K
Sbjct: 216 FQRMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVK 275

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           C  V     VF   +++  V W+A++AG   NG + +A+ELF  M    ++PND TL S+
Sbjct: 276 CGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSV 335

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L A A L  ++    I  Y+   G +S V V++ L+ +YSKCG++  A +IF ++P +D 
Sbjct: 336 LSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDN 395

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
             V W+ +I G  ++G  E A++L+  M +  V+PN +TF   + AC+H G ++ GL+ F
Sbjct: 396 --VTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFF 453

Query: 541 NFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             M  +H      +H+ CIVDL  R+GRL +AY+ I  M ++P   +WG LL A  IH N
Sbjct: 454 RSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLN 513

Query: 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           VEL E+A K L ELEP+N GNYV+LS +Y++  RW++A  VR +M +K ++KA A+S +E
Sbjct: 514 VELAELAGKKLLELEPDNSGNYVILSNIYASAGRWQEALKVRKLMKDKRVQKAAAYSWVE 573

Query: 661 VRN 663
           V +
Sbjct: 574 VED 576



 Score =  234 bits (598), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 168/600 (28%), Positives = 295/600 (49%), Gaps = 52/600 (8%)

Query: 29  IAGTKQLHAFIITS----GPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKM 84
           I   KQ+ A II       PLF  +R  L  ++  +   R +FD++      ++ + +  
Sbjct: 15  INQLKQIQALIIIKYLSLTPLF--IRRLLNASF--IQYARQVFDQIPHPDQGVHCSFITA 70

Query: 85  YAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF-- 142
           Y++   ++++L+ F+ M +        +T P + K+C  L    +G  +H  V+  GF  
Sbjct: 71  YSRLSLNNEALRTFVSMHQ-NNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHS 129

Query: 143 ----------------DM-------------DTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
                           D+             DT   NCLI+ Y   GEV AAR++FD M 
Sbjct: 130 SVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMR 189

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
           + S+VSWN +IS Y +N    +  ++F  M     EP+  ++ +VL  C  L ++EMG  
Sbjct: 190 DRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLR 249

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           I +L     LG N+    A+++MYVKCG+V++ RLVFD M+ RDVVTW++MI GYA NG 
Sbjct: 250 IKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGR 309

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              AL LF+ M+   ++PN +T+ S+LSAC+ L  ++ G  + ++   + L   V V +A
Sbjct: 310 SNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASA 369

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           L+ MY+KC  +  + Q+F +  ++  V WN+++ G   NG A  A+ L+ +M    V+PN
Sbjct: 370 LLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPN 429

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV-VEVSTGLIDIYSKCGSLESAHKIF 472
           + T   L+ A      ++  +     +     +S  +E    ++D++ + G L  A++  
Sbjct: 430 NITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFI 489

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP-NEVTFTSALHACSHGG 531
             + + + ++V+W  +++   +H + E A    K++++  ++P N   +    +  +  G
Sbjct: 490 CRMEV-EPNVVIWGTLLSASRIHLNVELAELAGKKLLE--LEPDNSGNYVILSNIYASAG 546

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVD-----LLGRAG--RLDEAYDLIRTMPLKPT 584
              E L +   M +     + A  +  + D     L+G     R DE Y  I  + L  T
Sbjct: 547 RWQEALKVRKLMKDKRVQKAAAYSWVEVEDRVHKFLVGDTSHPRSDEVYSTIDGLALLST 606



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 156/312 (50%), Gaps = 11/312 (3%)

Query: 1   MNGPSHHTLPKTTHLVIKL--VQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYG 58
           M  P+  TL     +  KL  ++     K +   K L + +I S  +       +    G
Sbjct: 223 MCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAML-----EMYVKCG 277

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
            V + R++FD M+ R    ++ ++  YAQNG S+++L++F  M +  +  P++ T   V+
Sbjct: 278 AVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENM-KSAQIKPNDVTLVSVL 336

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
            AC  L   + G  +   V   G   + +V + L+ MY   G +  AR++FD + +   V
Sbjct: 337 SACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNV 396

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHEL 237
           +WN++I G   N +A++A+ +++ M +  V+P+  + V ++ AC +   +E+G      +
Sbjct: 397 TWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEFFRSM 456

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRN 296
            +   +  NI  +  +VD++ + G + +A     RM  E +VV W ++++   ++ +V  
Sbjct: 457 RSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTLLSASRIHLNVEL 516

Query: 297 A-LGLFQLMQFE 307
           A L   +L++ E
Sbjct: 517 AELAGKKLLELE 528


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 211/616 (34%), Positives = 343/616 (55%), Gaps = 13/616 (2%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           YG + + +++F++M +R++   N +M   A+     ++ K+F  M  L E N    +Y +
Sbjct: 298 YGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINAS--SYAV 355

Query: 117 VIKACTDLA----WRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
           ++ A T+ +     ++ G  +H  ++     D+   +GN L+ +Y     +  AR +F  
Sbjct: 356 LLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQL 415

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M     VSWN++ISG   N   +EA+  F  M ++G+ P   SV+S L +C  L  I +G
Sbjct: 416 MPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLG 475

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           + IH       L  +++  NAL+ +Y +   + E + VF  M E D V+W S I   A +
Sbjct: 476 QQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATS 535

Query: 292 -GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
              V  A+  F  M   G +PN +T  ++LSA SSL  L+ GR +HA  +K ++  +  +
Sbjct: 536 EASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDNAI 595

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKK-TVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           E  L+  Y KC  ++    +F+R S+++  V WNA+++G +HNG+  KA+ L   M+ + 
Sbjct: 596 ENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKG 655

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
              +D TL ++L A A +A L++ M +H   IR    + V V + L+D+Y+KCG ++ A 
Sbjct: 656 QRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYAS 715

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
           + F  +P+++  I  W+ +I+GY  HGHG  A+ LF +M Q G  P+ VTF   L ACSH
Sbjct: 716 RFFELMPVRN--IYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSH 773

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
            GL+DEG + F  M E ++   R +H++C+VDLLGRAG + +  + I+TMP+ P   +W 
Sbjct: 774 VGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWR 833

Query: 590 ALLGACVIHG--NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
            +LGAC      N ELG  AAK L ELEP N  NYVLLS +++A  +W+D E  R  M  
Sbjct: 834 TILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRN 893

Query: 648 KGLRKAPAHSLIEVRN 663
             ++K    S + +++
Sbjct: 894 AEVKKEAGCSWVTMKD 909



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 168/637 (26%), Positives = 304/637 (47%), Gaps = 47/637 (7%)

Query: 22  QYAATKSIAGTKQLHAFIITSG---PLF--THLRSSLVRAYGHVSNVRILFDEMSERSSF 76
           +Y  + ++    QLH  I  +G    +F    L +  VRA G++ + + LFDEM +++  
Sbjct: 48  RYRDSCTVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRA-GNLVSAQKLFDEMPQKNLV 106

Query: 77  LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR--KLGIALH 134
            ++ ++  YAQNG   ++  +F G++  G   P++Y     ++AC +L     KLG+ +H
Sbjct: 107 SWSCLVSGYAQNGMPDEACMLFRGIISAGLL-PNHYAIGSALRACQELGPNMLKLGMEIH 165

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNF-GEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           G +  + +  D  + N L++MY +    +  AR+VF+ +   +  SWN++IS Y +   A
Sbjct: 166 GLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDA 225

Query: 194 KEALVVFDWMLKSGVEPDC-------ASVVSV---LPACG------YLKEIEMGRMIHEL 237
             A  +F  M +   E +C        S+V+V   L  CG       L  IE    + +L
Sbjct: 226 ISAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDL 285

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
             G          +ALV  + + G ++ A+++F++M +R+ VT   ++ G A       A
Sbjct: 286 YVG----------SALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEA 335

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK----RGRSLHAWTIKQNL-ECEVIVET 352
             +F+ M+ + V  N+ +   LLSA +    LK    +G+ +HA+ I+  L +  +++  
Sbjct: 336 AKIFKEMK-DLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGN 394

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           AL+++YAKCN +  +  +F     K TV WN+I++G  HN    +AV  F  M    + P
Sbjct: 395 ALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVP 454

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           +  ++ S L + A L  +     IH   I+ G    V VS  L+ +Y++   +E   K+F
Sbjct: 455 SKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVF 514

Query: 473 SEIPIKDKDIVVWSVIIAGYGM-HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
             +P  + D V W+  I            A+  F EM+Q+G +PN VTF + L A S   
Sbjct: 515 FLMP--EYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLS 572

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
           LL+ G  +   +L++      A   T ++   G+  ++++   +   M  +     W A+
Sbjct: 573 LLELGRQIHALILKHSVADDNAIENT-LLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAM 631

Query: 592 LGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           +    IH  +    +   WL   + +   ++ L + L
Sbjct: 632 ISG-YIHNGILHKAMGLVWLMMQKGQRLDDFTLATVL 667


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 189/534 (35%), Positives = 293/534 (54%), Gaps = 3/534 (0%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           L+ ++L+         G  +   Y+  G +  A K F+ +   ++ SWNT+++ + KN  
Sbjct: 34  LNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKC 93

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
             + L +F  MLK G   D  ++V  + AC  L   +  ++ H L    RL  +     A
Sbjct: 94  FYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPA 153

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+++Y + GS+ EA  VF+ +  ++ V W  MI G+    +      LF  M+  G   +
Sbjct: 154 LMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELD 213

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQN-LECEVIVETALIDMYAKCNLVKLSFQVF 371
              +  L+ AC ++Y  K G++ H   IK+N ++    ++T+L+DMY KC  +  + ++F
Sbjct: 214 PFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLF 273

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
              S +  V W+AI+AG   NG A +++ +FRQML + V PN  T  S++ A + L  L+
Sbjct: 274 EEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLK 333

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           Q  ++H Y+IR G    V+  T  ID+Y+KCG + +A+++F +IP  +K++  WS +I G
Sbjct: 334 QGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIP--EKNVFSWSTMING 391

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           +GMHG    A++LF EM      PN VTF S L ACSH G ++EG   F  M  ++    
Sbjct: 392 FGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITP 451

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
             +HY C+VDLLGRAG++DEA   I  MP +P  + WGALLGAC IH   EL E  AK L
Sbjct: 452 VEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKL 511

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
             LE +  G YV+LS +Y+ V  W+  +  R  M EKG+ K    + IE+   L
Sbjct: 512 LPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKL 565



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 140/506 (27%), Positives = 258/506 (50%), Gaps = 13/506 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLV-RAYGHVSNVRIL---FDEMSERS 74
           L+  +  TK++A   QL+A I+ +    + L   ++  AY  + ++ +    F+ ++  +
Sbjct: 18  LLSLFRFTKTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFEN 77

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
              +NT++  +++N   +D L++F  ML+ G+   D++     +KAC  L+  +     H
Sbjct: 78  LHSWNTILASHSKNKCFYDVLQLFKRMLKEGKL-VDSFNLVFAVKACFGLSLFQGAKLFH 136

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
              +    + D +V   L+ +Y   G ++ A KVF+ +   + V W  +I G+   +   
Sbjct: 137 SLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEF 196

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-VAGGRLGKNIAAWNAL 253
               +F  M +SG E D   V  ++ ACG +   + G+  H L +    +  N     +L
Sbjct: 197 GVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSL 256

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           VDMY+KCG ++ A  +F+ +S RDVV W+++I G+A NG    ++ +F+ M  + V PNS
Sbjct: 257 VDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNS 316

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
           +T  S++ ACSSL  LK+GRS+H + I+  +E +V   T+ IDMYAKC  +  +++VF +
Sbjct: 317 VTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQ 376

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
             +K    W+ ++ G   +GL  +A+ LF +M      PN  T  S+L A +    +++ 
Sbjct: 377 IPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEG 436

Query: 434 MNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
            +    + R YG   V E    ++D+  + G ++ A    + +P  +     W  ++   
Sbjct: 437 WSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPT-EPGASAWGALLGAC 495

Query: 493 GMHGHGETAVSLFKEMV-----QSGV 513
            +H   E A  + K+++     QSGV
Sbjct: 496 RIHRRAELAEEVAKKLLPLESDQSGV 521



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 118/282 (41%), Gaps = 3/282 (1%)

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           +LLS       L     L+A  +   L   ++    +   Y +   + ++ + F   + +
Sbjct: 17  TLLSLFRFTKTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFE 76

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
               WN ILA    N      ++LF++ML E    +   L   + A   L+  Q A   H
Sbjct: 77  NLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFH 136

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
              I+        V+  L+++Y++ GSLE AHK+F E+P+K+   V+W V+I G+     
Sbjct: 137 SLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNS--VIWGVMIKGHLNFSE 194

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
                 LF  M +SG + +       + AC +     EG       ++ +   S     T
Sbjct: 195 EFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQT 254

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            +VD+  + G LD A  L   +  +    VW A++     +G
Sbjct: 255 SLVDMYMKCGFLDFALKLFEEISYRDV-VVWSAIIAGFARNG 295


>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
 gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
          Length = 577

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 198/512 (38%), Positives = 282/512 (55%), Gaps = 3/512 (0%)

Query: 155 MYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV-EPDCA 213
           MY   G +  A K+FD M     VSWN +ISG+ K+         F  M   G    D A
Sbjct: 1   MYAKNGVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQA 60

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           ++ ++L AC   +   + +M+H L       + I+  NAL+  Y KCG  +    VFD M
Sbjct: 61  TLTTILSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEM 120

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
            ER+V+TWT++I+G   +   R++L LF  M    V PNSLT  S L ACS L  L+ G 
Sbjct: 121 LERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALREGC 180

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            +H    K  L+ +  VE+AL+DMY+KC  +  + Q+F    +   V    ILAG   NG
Sbjct: 181 QIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQNG 240

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
              +A++ F +ML    E +   ++++L  +     L     IH  +I+  F S   V  
Sbjct: 241 FEEEAMQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGSNPFVGN 300

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
           GLI++YSKCG LE + K+FS +P  +   V W+ +IA +  HG G  A+ L+KEM   GV
Sbjct: 301 GLINMYSKCGDLEDSTKVFSRMPCMNS--VSWNSMIAAFARHGDGSRALQLYKEMRLKGV 358

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
           +P +VTF S LHACSH GL+++G++    M E H+   R +HY C+VD+LGRAG L+EA 
Sbjct: 359 EPTDVTFLSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAGLLNEAK 418

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633
             I  +P+KP   VW ALLGAC IHG+ E+G+ AA+ L    PE P  Y+LL+ +YS+  
Sbjct: 419 TFIEGLPIKPDVLVWQALLGACGIHGDPEMGKYAAEHLILSAPEKPSPYILLANIYSSKG 478

Query: 634 RWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           RWK+       M E  + K    S IE+ N L
Sbjct: 479 RWKERAKTIKRMKEMCVAKETGISWIEIENNL 510



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 222/443 (50%), Gaps = 2/443 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +++   LFDEM  R +  +N ++  + ++G+       F  M  LG Y  D  T   +
Sbjct: 6   GVLTDAAKLFDEMPMRDTVSWNIMISGFLKDGSFDVGFGFFKQMQSLGFYRLDQATLTTI 65

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + AC       +   +H   ++ GF  +  VGN LI  Y   G   +  +VFD M E +V
Sbjct: 66  LSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFDEMLERNV 125

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           ++W  +ISG  ++   +++L +F  M    VEP+  + +S L AC  L+ +  G  IH  
Sbjct: 126 ITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACSGLQALREGCQIHGR 185

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V    L  +    +AL+DMY KCGS+ +   +F+   + D V+ T ++ G+A NG    A
Sbjct: 186 VWKLGLQSDFCVESALMDMYSKCGSMGDTLQIFESAGQLDKVSMTIILAGFAQNGFEEEA 245

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           +  F  M   G   +S  + ++L    +   L  G+ +H+  IK++      V   LI+M
Sbjct: 246 MQFFVKMLEAGTEIDSNMVSAVLGVFGADTSLGLGQQIHSLVIKRSFGSNPFVGNGLINM 305

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y+KC  ++ S +VF+R     +V WN+++A    +G   +A++L+++M ++ VEP D T 
Sbjct: 306 YSKCGDLEDSTKVFSRMPCMNSVSWNSMIAAFARHGDGSRALQLYKEMRLKGVEPTDVTF 365

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSV-VEVSTGLIDIYSKCGSLESAHKIFSEIP 476
            SLL A + +  +++ M     +     L+  +E    ++D+  + G L  A      +P
Sbjct: 366 LSLLHACSHVGLVEKGMEFLKSMTEVHKLTPRMEHYACVVDMLGRAGLLNEAKTFIEGLP 425

Query: 477 IKDKDIVVWSVIIAGYGMHGHGE 499
           IK  D++VW  ++   G+HG  E
Sbjct: 426 IK-PDVLVWQALLGACGIHGDPE 447


>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 745

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 205/667 (30%), Positives = 339/667 (50%), Gaps = 43/667 (6%)

Query: 27  KSIAGTKQLHAFIITSGPLFTHL--RSSLVRAYGHVSNV---RILFDEMSERSSFLYNTV 81
           +SI   K LH+ II SG    H+   ++++  Y   S++   R +FDEM  R+   + T+
Sbjct: 17  RSIKNAKSLHSHIIKSG-FCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRNIVSWTTM 75

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           + +   +   H++L ++  M+      P+ + Y  V+KAC  +   +LG  +H  +    
Sbjct: 76  VSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAK 135

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
            D+D  + N L+ MY+  G ++ A++VF  +   +  SWNTLI GY K     +A+ +FD
Sbjct: 136 LDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFD 195

Query: 202 WMLK------------------------------SGVEPDCASVVSVLPACGYLKEIEMG 231
            M +                               G++ D  +  SVL ACG   E+ +G
Sbjct: 196 KMPEPDIVSWNSIIAGLVDNASSRALRFVSMMHGKGLKMDEFTFPSVLKACGCSDELMLG 255

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT-----WTSMIN 286
           R IH  +       +    +AL+DMY  C  ++EA  +FD+      V+     W SM++
Sbjct: 256 REIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQYFRNSSVSESLALWNSMLS 315

Query: 287 GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346
           G+ +NGD   AL +   M   GVR +  T   +L  C +   L     +H + I    E 
Sbjct: 316 GHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYEL 375

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
           + +V + LID+YAK   +  + ++F R   K  V W++++ GC   G  + A  LF  M+
Sbjct: 376 DCVVGSILIDIYAKQGSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDMI 435

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
              ++ +   ++ +L A + LA  Q    +H   ++ G+ S   V+T LID+Y+KCG +E
Sbjct: 436 HLGLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIE 495

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
            A  +F    + + D + W+ II G   +G  E A+SL  +M++SG +PN++T    L A
Sbjct: 496 DALSLFG--CLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLTA 553

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           C H GL++E  D+FN +  NH      +HY C+VD+LG+AGR +EA  LI  MP KP   
Sbjct: 554 CRHSGLVEEAWDVFNSIETNHGLIPCPEHYNCMVDILGQAGRFEEAVKLISEMPFKPDKT 613

Query: 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646
           +W +LLGAC  + N +L  + A+ L    PE+   Y++LS +Y+A+  W     VR+ + 
Sbjct: 614 IWSSLLGACGTYKNRDLANIVAEHLLATSPEDVSVYIMLSNVYAALGMWDSVSKVRETVK 673

Query: 647 EKGLRKA 653
           + G ++A
Sbjct: 674 KIGKKRA 680



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 164/582 (28%), Positives = 275/582 (47%), Gaps = 48/582 (8%)

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           I  + C      K   +LH  ++ +GF    F+ N +I++Y     +  AR +FD M   
Sbjct: 8   IAFRYCIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHR 67

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE-PDCASVVSVLPACGYLKEIEMGRMI 234
           ++VSW T++S    ++   EAL +++ M++S +E P+     +VL ACG ++ +E+G+M+
Sbjct: 68  NIVSWTTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMV 127

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV------------------------- 269
           H  +   +L  +I   NAL+DMYVKCGS+ +A+ V                         
Sbjct: 128 HYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQGLI 187

Query: 270 ------FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
                 FD+M E D+V+W S+I G   N   R AL    +M  +G++ +  T  S+L AC
Sbjct: 188 DDAMKLFDKMPEPDIVSWNSIIAGLVDNASSR-ALRFVSMMHGKGLKMDEFTFPSVLKAC 246

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP-- 381
                L  GR +H + IK   E      +ALIDMY+ C L+  + ++F +  +  +V   
Sbjct: 247 GCSDELMLGREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQYFRNSSVSES 306

Query: 382 ---WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
              WN++L+G V NG   +A+ +   M    V  +  T + +L       +L  A  +H 
Sbjct: 307 LALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHG 366

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           ++I  G+     V + LIDIY+K GS+ +A ++F  +P  DKD+V WS +I G    G  
Sbjct: 367 FVITSGYELDCVVGSILIDIYAKQGSINNALRLFERLP--DKDVVAWSSLITGCARFGSD 424

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
           + A SLF +M+  G+Q +    +  L ACS       G  + +  L+     S     T 
Sbjct: 425 KLAFSLFMDMIHLGLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYE-SEGVVTTA 483

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
           ++D+  + G +++A  L   +    T + W +++  C  +G  E  E  +     +E   
Sbjct: 484 LIDMYAKCGDIEDALSLFGCLSEIDTMS-WTSIIVGCAQNGRAE--EAISLLHKMIESGT 540

Query: 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDE----KGLRKAPAH 656
             N + +  + +A R     E   DV +      GL   P H
Sbjct: 541 KPNKITILGVLTACRHSGLVEEAWDVFNSIETNHGLIPCPEH 582



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 150/293 (51%), Gaps = 12/293 (4%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILF 67
           T  +V+K+   +    +++   Q+H F+ITSG  L   + S L+  Y   G ++N   LF
Sbjct: 344 TFSIVLKICMNF---DNLSLASQVHGFVITSGYELDCVVGSILIDIYAKQGSINNALRLF 400

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           + + ++    +++++   A+ G+   +  +F+ M+ LG    D++   IV+KAC+ LA  
Sbjct: 401 ERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDMIHLG-LQIDHFVISIVLKACSSLASH 459

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           + G  +H   L  G++ +  V   LI MY   G+++ A  +F  + E   +SW ++I G 
Sbjct: 460 QHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLFGCLSEIDTMSWTSIIVGC 519

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKN 246
            +N  A+EA+ +   M++SG +P+  +++ VL AC +   +E    + + +     L   
Sbjct: 520 AQNGRAEEAISLLHKMIESGTKPNKITILGVLTACRHSGLVEEAWDVFNSIETNHGLIPC 579

Query: 247 IAAWNALVDMYVKCGSVNEA-RLVFDRMSERDVVTWTSMIN--GYALNGDVRN 296
              +N +VD+  + G   EA +L+ +   + D   W+S++   G   N D+ N
Sbjct: 580 PEHYNCMVDILGQAGRFEEAVKLISEMPFKPDKTIWSSLLGACGTYKNRDLAN 632


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 208/616 (33%), Positives = 337/616 (54%), Gaps = 13/616 (2%)

Query: 57   YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
            YG +   +++F +M +R++   N +M   A+     ++ K+F  M  L E N ++    +
Sbjct: 399  YGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLV--V 456

Query: 117  VIKACTDLA----WRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            ++   T+ +     ++ G  +H  +  +G  D    +GN L+ MY     +  A  VF  
Sbjct: 457  LLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQL 516

Query: 172  MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
            M     VSWN++ISG   N   +EA+  F  M ++G+ P   SV+S L +C  L  + +G
Sbjct: 517  MPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLG 576

Query: 232  RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA-L 290
            R IH       L  +++  NAL+ +Y +  S+NE + VF +M E D V+W S I   A  
Sbjct: 577  RQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKY 636

Query: 291  NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
               V  AL  F  M   G RPN +T  ++L+A SS   L  G  +HA  +K ++  +  +
Sbjct: 637  EASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAI 696

Query: 351  ETALIDMYAKCNLVKLSFQVFARTSKKK-TVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
            E AL+  Y KC  ++    +F+R S+++  V WN++++G +H+G+  KA++L   M+   
Sbjct: 697  ENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRG 756

Query: 410  VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
             + +  T  ++L A A +A L++ M +H   +R    S V V + L+D+Y+KCG ++ A 
Sbjct: 757  QKLDGFTFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYAS 816

Query: 470  KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
            + F  +P+++  I  W+ +I+GY  HGHG+ A+ +F  M Q G  P+ VTF   L ACSH
Sbjct: 817  RFFELMPVRN--IYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSH 874

Query: 530  GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
             GL+DEG   F  M E +    R +H++C+VDLLGRAG + +  D I+TMP+ P   +W 
Sbjct: 875  VGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWR 934

Query: 590  ALLGACVIHG--NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
             +LGAC      N ELG+ AAK L ELEP+N  NYVLLS +++A   W+D    R  M +
Sbjct: 935  TVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRK 994

Query: 648  KGLRKAPAHSLIEVRN 663
              ++K    S + +++
Sbjct: 995  AAVKKDAGCSWVNMKD 1010



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 144/480 (30%), Positives = 243/480 (50%), Gaps = 27/480 (5%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           LH ++  TGF  D F  N LI +Y+  G + +ARK+FD M + ++VSW+ LISGY +N  
Sbjct: 162 LHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRM 221

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE--IEMGRMIHELVAGGRLGKNIAAW 250
             EA  +F  ++ SG+ P+  +V S L AC       I++G  IH  +       ++   
Sbjct: 222 PDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILS 281

Query: 251 NALVDMYVKC-GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
           N L+ MY  C GS+++A  VFD +  R+ VTW S+I+ Y   GD  +A  LF +MQ EGV
Sbjct: 282 NVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGV 341

Query: 310 ----RPNSLTIGSLLSACSSLYY--LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
               RPN  T+ SL++A  SL    L     +     K     ++ V +AL++ +A+  L
Sbjct: 342 ELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGL 401

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           +  +  +F +   +  V  N ++ G        +A ++F++M  ++VE N  +L  LL  
Sbjct: 402 MDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEM-KDLVEINSESLVVLLST 460

Query: 424 YAILADLQQ----AMNIHCYLIRYGFLSV-VEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           +   ++L++       +H YL R G +   + +   L+++Y KC ++++A  +F  +P  
Sbjct: 461 FTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMP-- 518

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
            KD V W+ +I+G   +   E AVS F  M ++G+ P+  +  S L +CS  G L  G  
Sbjct: 519 SKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQ 578

Query: 539 L----FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           +    F + L+   + S A     ++ L      ++E   +   MP +     W + +GA
Sbjct: 579 IHGEGFKWGLDLDVSVSNA-----LLTLYAETDSINECQKVFFQMP-EYDQVSWNSFIGA 632



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 153/598 (25%), Positives = 286/598 (47%), Gaps = 36/598 (6%)

Query: 22  QYAATKSIAGTKQLHAFIITSGPLFTH---LRSSLVRAY---GHVSNVRILFDEMSERSS 75
           +Y  + S+     LH  +  +G  FT      ++L+  Y   G++ + R LFDEM +++ 
Sbjct: 149 RYKTSSSLYDANHLHLQLYKTG--FTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNL 206

Query: 76  FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR--KLGIAL 133
             ++ ++  Y QN    ++  +F G++  G   P+++     ++AC        KLG+ +
Sbjct: 207 VSWSCLISGYTQNRMPDEACSLFKGVISSGLL-PNHFAVGSALRACQQCGSTGIKLGMQI 265

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNF-GEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           H  +       D  + N L++MY +  G +  A +VFD +   + V+WN++IS Y +   
Sbjct: 266 HAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGD 325

Query: 193 AKEALVVFDWMLKSGVE----PDCASVVSVLPACGYLKE---IEMGRMIHELVAGGRLGK 245
           A  A  +F  M   GVE    P+  ++ S++ A   L +   + + +M+  +   G L +
Sbjct: 326 AVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFL-R 384

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           ++   +ALV+ + + G ++ A+++F +M +R+ VT   ++ G A       A  +F+ M+
Sbjct: 385 DLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMK 444

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLK----RGRSLHAWTIKQNL-ECEVIVETALIDMYAK 360
            + V  NS ++  LLS  +    LK    +G+ +HA+  +  L +  + +  AL++MY K
Sbjct: 445 -DLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGK 503

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           C  +  +  VF     K TV WN++++G  HN    +AV  F  M    + P++ ++ S 
Sbjct: 504 CTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVIST 563

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L + + L  L     IH    ++G    V VS  L+ +Y++  S+    K+F ++P  + 
Sbjct: 564 LSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMP--EY 621

Query: 481 DIVVWSVIIAGYGMHGHGE-TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
           D V W+  I     +      A+  F EM+Q+G +PN VTF + L A S   +L  G  +
Sbjct: 622 DQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQI 681

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYD---LIRTMPLKPTHAVWGALLGA 594
              +L+     S AD       LL   G+ ++  D   +   M  +     W +++  
Sbjct: 682 HALILKY----SVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISG 735



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 2/115 (1%)

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           L+S    Y   + L  A ++H  L + GF   V     LI+IY + G+L SA K+F E+P
Sbjct: 143 LDSEFDRYKTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMP 202

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
              K++V WS +I+GY  +   + A SLFK ++ SG+ PN     SAL AC   G
Sbjct: 203 --QKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCG 255


>gi|302788478|ref|XP_002976008.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
 gi|300156284|gb|EFJ22913.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
          Length = 495

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 189/492 (38%), Positives = 283/492 (57%), Gaps = 2/492 (0%)

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
           TG     FVGN L+ MY   G V+ AR+ F++M   +V+SW+T+++ Y +     +ALV+
Sbjct: 4   TGLCCGEFVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVL 63

Query: 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVK 259
           F  M + GVEP+  + +SVL AC   + +E G MIH LVA  +L   +    ALV MY K
Sbjct: 64  FQKMEEEGVEPNEVTFLSVLDACANAEAVEQGEMIHRLVARKKLDVGLIVGTALVGMYGK 123

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
           C  + EAR VFD + E+DVVTW++MI+ YA  G VR A+ LF  M  +GVRPN + + S+
Sbjct: 124 CSRLIEARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSI 183

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           L ACSS   L  G+  H   +      +V     LI MY KC  +  +  VF    ++  
Sbjct: 184 LGACSSAGALAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDL 243

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           + W+A+LA    +G  + A   FR+M +E V+P+  T  SLL A ++L  L +   IH  
Sbjct: 244 ISWSAMLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGHVIHTR 303

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           +   GF SV+ +   LID+Y KCGSL++A +IF    +  ++++ W+ +I     H  G+
Sbjct: 304 IRAEGFQSVMYIENSLIDMYGKCGSLQAAREIFDR--MSHRNVITWTTMITACVQHEQGK 361

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
            A+ LF+EM ++GVQP++V F S +H+CSH GL++EG   F  M+E+       +H+  +
Sbjct: 362 EALELFEEMEKAGVQPDQVAFLSIIHSCSHSGLVEEGRIYFLKMVEDQSFTPGVEHFVGM 421

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENP 619
           +DLLGR+G+L+EA +L+  MP++P    W  LL AC  H + E     A  +  L P + 
Sbjct: 422 LDLLGRSGKLNEAEELMEFMPVEPGVVGWNTLLSACKTHNDTERAGRVAGGMLVLGPGHA 481

Query: 620 GNYVLLSKLYSA 631
           G YV  S + S 
Sbjct: 482 GPYVSFSNILSG 493



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 134/455 (29%), Positives = 235/455 (51%), Gaps = 6/455 (1%)

Query: 51  SSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           +SL+  YG    V   R  F+ M+ R+   ++T++  YAQ G    +L +F  M   G  
Sbjct: 14  NSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEEG-V 72

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            P+  T+  V+ AC +    + G  +H  V     D+   VG  L+ MY     +  AR+
Sbjct: 73  EPNEVTFLSVLDACANAEAVEQGEMIHRLVARKKLDVGLIVGTALVGMYGKCSRLIEARQ 132

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VFD + E  VV+W+T+IS Y +  + +EA+ +F +M   GV P+   ++S+L AC     
Sbjct: 133 VFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSSAGA 192

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +  G+M HELV     G +++  N L+ MY KCG +  A+ VF  M  RD+++W++M+  
Sbjct: 193 LAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSAMLAV 252

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
            A +G  ++A   F+ M  EGV+P+ +T  SLL ACS L  L  G  +H     +  +  
Sbjct: 253 IAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGHVIHTRIRAEGFQSV 312

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           + +E +LIDMY KC  ++ + ++F R S +  + W  ++  CV +   ++A+ELF +M  
Sbjct: 313 MYIENSLIDMYGKCGSLQAAREIFDRMSHRNVITWTTMITACVQHEQGKEALELFEEMEK 372

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLE 466
             V+P+     S++ + +    +++       ++    F   VE   G++D+  + G L 
Sbjct: 373 AGVQPDQVAFLSIIHSCSHSGLVEEGRIYFLKMVEDQSFTPGVEHFVGMLDLLGRSGKLN 432

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
            A ++   +P+ +  +V W+ +++    H   E A
Sbjct: 433 EAEELMEFMPV-EPGVVGWNTLLSACKTHNDTERA 466


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 206/614 (33%), Positives = 336/614 (54%), Gaps = 43/614 (7%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V +   LF  M  RS+  YNT++  YA NG    +L  F  + R     PD+++Y  +
Sbjct: 121 GRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIPR-----PDSFSYNTL 175

Query: 118 IKACTDLAWRKLGIALHGRVLITGFD----MDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           + A        LG++     +   FD     D+   N +I+ + N G V  AR  FD   
Sbjct: 176 LHA--------LGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAP 227

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI---EM 230
           E   VSWN +++ Y +N   +EA  +FD    S  E D  S  +++   GY++     E 
Sbjct: 228 EKDAVSWNGMLAAYVRNGRIQEARELFD----SRTEWDAISWNALM--AGYVQRSQIEEA 281

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
            +M +++       +++ +WN +V  Y + G + EAR +FD    RDV TWT++++GYA 
Sbjct: 282 QKMFNKMPQ-----RDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQ 336

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           NG +  A  +F  M  +    N+++  ++++A     Y++R     A  +   + C  + 
Sbjct: 337 NGMLEEAKRVFDAMPDK----NAVSWNAMMAA-----YVQRRMMEEAKELFDAMPCRNVA 387

Query: 351 E-TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
               ++  YA+  ++  +  +F    +K  V W A+LA     G + + ++LF++M    
Sbjct: 388 SWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCG 447

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
              N +    +L   A +A L+  M +H  LI+ G+     V   L+ +Y KCGS+E AH
Sbjct: 448 EWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAH 507

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
             F E+  +++D+V W+ +IAGY  HG G+ A+ +F  M ++  +P+++T    L ACSH
Sbjct: 508 SAFEEM--EERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSH 565

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
            GL+++G+  F  M  +    ++ +HYTC++DLLGRAGRLDEA +L++ MP +P   +WG
Sbjct: 566 SGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWG 625

Query: 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
           ALLGA  IH N ELG  AA+ +FELEPEN G YVLLS +Y++  +W+D + +R +M E+G
Sbjct: 626 ALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERG 685

Query: 650 LRKAPAHSLIEVRN 663
           ++K P  S IEV+N
Sbjct: 686 VKKVPGFSWIEVQN 699



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 159/345 (46%), Gaps = 30/345 (8%)

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           N  +  +++ G V +A  +F  M  R   T+ +M+ GYA NG +  AL  F+ +     R
Sbjct: 111 NRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSIP----R 166

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSL-HAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
           P+S +  +LL A      L   R+L     +K ++   V++ +     +A   LV L+  
Sbjct: 167 PDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISS-----HANHGLVSLARH 221

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
            F    +K  V WN +LA  V NG  ++A ELF        E +  + N+L+  Y   + 
Sbjct: 222 YFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSR----TEWDAISWNALMAGYVQRSQ 277

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           +++A  +   + +   +S   + +G    Y++ G +  A ++F   PI  +D+  W+ I+
Sbjct: 278 IEEAQKMFNKMPQRDVVSWNTMVSG----YARRGDMAEARRLFDVAPI--RDVFTWTAIV 331

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           +GY  +G  E A  +F  M       N V++ + + A     +++E  +LF+ M      
Sbjct: 332 SGYAQNGMLEEAKRVFDAMPDK----NAVSWNAMMAAYVQRRMMEEAKELFDAM-----P 382

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           C     +  ++    +AG LDEA  +   MP K     W A+L A
Sbjct: 383 CRNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDA-VSWAAMLAA 426


>gi|255562697|ref|XP_002522354.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538432|gb|EEF40038.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 704

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 222/658 (33%), Positives = 350/658 (53%), Gaps = 19/658 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFII-----TSGPLFTHLRSSLVRAYGHV---SNVRILFDEM 70
           L+++     S+   +QLHA I+     TS     +L ++L+  Y H    S+ + LFD M
Sbjct: 10  LIKKCTTINSLKKARQLHALILATTASTSYAQSPYLNNNLIAMYAHCGSRSDAQKLFDRM 69

Query: 71  SERSSFLYNTVMKMYAQNGASHD-SLKMF--LGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
             +++  YN ++  Y ++ +    S K+F  +G+ RL    P+  T+  +++ C  L   
Sbjct: 70  PRKNAISYNALIAAYCRDSSYETLSFKLFSDMGIQRL---RPNGATFTSLLQVCCLLEDW 126

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
            LG  LHG+VL  G+  D  V   L+ MY + G++++A KVF    E   V WN++ISGY
Sbjct: 127 FLGSTLHGQVLQFGYVNDICVQTMLLGMYSDCGDLESACKVFGYAVEKDDVFWNSMISGY 186

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            KN   KE+L +F  M++SG      +    L AC  L     GR+IH  V    +  + 
Sbjct: 187 LKNDRIKESLSLFGEMVRSGTIFTQFTCSMALNACSKLGYYSQGRIIHAQVIVSNILPDS 246

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQF 306
           A  NAL+DMY  CG    A  +F R+    +++W SMI+ +A N +   A+GLF +L+  
Sbjct: 247 ALQNALLDMYYSCGDRRTALTLFSRIQIPSLISWNSMISWFAKNEEGEKAMGLFVKLLGM 306

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
              +P+  T  +++SA         G+ LHA  IK  L+  V +  AL+ MY + + V+ 
Sbjct: 307 STCKPDEYTFTAIISATGEFRATDYGQPLHAQVIKAGLQWSVFIGNALLSMYFRNSDVEA 366

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           +  VF+   +K  V W  ++ G    G    A++LF +M  E  + +   L+  L   A 
Sbjct: 367 ARGVFSLMEEKDVVLWTEMIMGHCRLGDGESAIKLFCKMRQEGHKSDSFALSGALSVCAD 426

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           LA L+Q   +H   ++ G  + + V   L+D+Y+K G+L++A  IFS++   + D+  W+
Sbjct: 427 LAILKQGQMLHTQAVKTGCEAEISVCGSLVDMYAKNGNLQAAQLIFSQVC--NPDLKCWN 484

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            +I GY  HG  E AV LF E+++ G+ P++VTF S L AC+H GL+++G  L+++M +N
Sbjct: 485 SMIGGYSHHGMAEEAVMLFAEVLECGLTPDQVTFLSLLSACNHSGLVEKGKFLWDYMKKN 544

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH-AVWGALLGACVIHGNVELGE 605
             T     HY+C+V LL RAG LDEA +LI        H  +W  LL +CV   N+ +G 
Sbjct: 545 GIT-PGPKHYSCMVSLLSRAGLLDEAEELITESTCSEEHLKLWRTLLSSCVNRRNLTVGA 603

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            AAK +  L+PE+   Y+LLS LY+   RW     +R  +    L K P  S IE +N
Sbjct: 604 RAAKQVLRLDPEDSATYILLSNLYAVTGRWDGVAELRKKIRGLMLEKDPGVSWIEAKN 661



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 120/224 (53%), Gaps = 7/224 (3%)

Query: 318 SLLSACSSLYYLKRGRSLHAW----TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
           +L+  C+++  LK+ R LHA     T   +      +   LI MYA C     + ++F R
Sbjct: 9   ALIKKCTTINSLKKARQLHALILATTASTSYAQSPYLNNNLIAMYAHCGSRSDAQKLFDR 68

Query: 374 TSKKKTVPWNAILAG-CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
             +K  + +NA++A  C  +     + +LF  M ++ + PN AT  SLL    +L D   
Sbjct: 69  MPRKNAISYNALIAAYCRDSSYETLSFKLFSDMGIQRLRPNGATFTSLLQVCCLLEDWFL 128

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              +H  ++++G+++ + V T L+ +YS CG LESA K+F      +KD V W+ +I+GY
Sbjct: 129 GSTLHGQVLQFGYVNDICVQTMLLGMYSDCGDLESACKVFGYAV--EKDDVFWNSMISGY 186

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
             +   + ++SLF EMV+SG    + T + AL+ACS  G   +G
Sbjct: 187 LKNDRIKESLSLFGEMVRSGTIFTQFTCSMALNACSKLGYYSQG 230


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 189/536 (35%), Positives = 307/536 (57%), Gaps = 8/536 (1%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAM--YMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           +H ++L TG   D F  + ++A       G ++ AR VF  +   +  + N++I G    
Sbjct: 7   IHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDK 66

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
              +EAL+ +  M+  G+ PD  +  S+  +C    E   G+ IH          +  A 
Sbjct: 67  NLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGFASDTYAQ 123

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQFEGV 309
           N L++MY  CG +  AR VFD+M ++ VV+W +MI  +A       A+ LF ++M+ E V
Sbjct: 124 NTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENV 183

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
           +PN +T+ ++L+AC+    L   + +H +  +      V++ T L+D+Y KC  V+L+  
Sbjct: 184 KPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARD 243

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           +F +  +K    WN ++ G V +    +A+ LFR+M  + ++ +  T+ SLL A   L  
Sbjct: 244 LFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGA 303

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L+    +H Y+ +      V + T L+D+Y+KCGS+E+A ++F E+P  +KD++ W+ +I
Sbjct: 304 LELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMP--EKDVMTWTALI 361

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
            G  M G  E A+  F EM   GV+P+ +TF   L ACSH G +DEG+  FN M + +  
Sbjct: 362 LGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGI 421

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
               +HY  +VD+LGRAGR+ EA +LI++MP+ P   V G LLGAC IHGN+E  E AAK
Sbjct: 422 QPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAK 481

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
            L E++P + G YVLLS +Y + ++W++A+  R++M E+G+RK P  S IEV  ++
Sbjct: 482 QLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVV 537



 Score =  255 bits (651), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 149/486 (30%), Positives = 266/486 (54%), Gaps = 13/486 (2%)

Query: 33  KQLHAFIITSGPLFTHLRSSLVRAY------GHVSNVRILFDEMSERSSFLYNTVMKMYA 86
           KQ+HA ++ +G  F    +S + A+      G +   R++F ++   +S+  N++++   
Sbjct: 5   KQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCT 64

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
                 ++L  +  M+  G   PD YT+P + K+C + +    G  +H      GF  DT
Sbjct: 65  DKNLHQEALLFYQEMMVQG-LIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGFASDT 120

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
           +  N L+ MY N G + +ARKVFD M + +VVSW T+I  + +     EA+ +FD M+KS
Sbjct: 121 YAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKS 180

Query: 207 -GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
             V+P+  ++V+VL AC   +++ M + IHE +     G+++     L+D+Y KCG V  
Sbjct: 181 ENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQL 240

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           AR +FD+  E+++ +W  MING+  + +   AL LF+ MQ +G++ + +T+ SLL AC+ 
Sbjct: 241 ARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTH 300

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           L  L+ G+ LHA+  KQ ++ +V + TAL+DMYAKC  ++ + QVF    +K  + W A+
Sbjct: 301 LGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTAL 360

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN-IHCYLIRYG 444
           + G    G A  A++ F +M ++ V+P+  T   +L A +    + + ++  +     YG
Sbjct: 361 ILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYG 420

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
               +E   GL+DI  + G +  A ++   +P+   D  V   ++    +HG+ E A   
Sbjct: 421 IQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMA-PDQFVLGGLLGACRIHGNLEAAERA 479

Query: 505 FKEMVQ 510
            K++++
Sbjct: 480 AKQLLE 485



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 123/264 (46%), Gaps = 8/264 (3%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH--LRSSLVRAY---GHVSNVRILFDEM 70
           ++ ++   A  + +A  K++H +I   G    H  L + L+  Y   G V   R LFD+ 
Sbjct: 190 LVNVLTACARARDLAMVKRIHEYIDEHG-FGRHVVLNTVLMDVYCKCGCVQLARDLFDKA 248

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
            E++ F +N ++  + ++    ++L +F  M   G    D  T   ++ ACT L   +LG
Sbjct: 249 QEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKG-IKGDKVTMASLLLACTHLGALELG 307

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
             LH  +     D+D  +G  L+ MY   G ++ A +VF  M E  V++W  LI G    
Sbjct: 308 KWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMC 367

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAA 249
             A+ AL  FD M   GV+PD  + V VL AC +   ++ G    + +     +   I  
Sbjct: 368 GQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEH 427

Query: 250 WNALVDMYVKCGSVNEARLVFDRM 273
           +  LVD+  + G + EA  +   M
Sbjct: 428 YGGLVDILGRAGRIAEAEELIKSM 451


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 196/583 (33%), Positives = 322/583 (55%), Gaps = 45/583 (7%)

Query: 116 IVIKACTDLAWRKLGIALHGRVLITG-----FDMDTFVGNCLIAMYMNFGEVKAARKVFD 170
           +++++C+ +  R+L   +  R+ +TG     F +   +  C +A   + G++  A  +F+
Sbjct: 162 LIMESCSTM--RQLK-QIQARMTLTGIITHAFPVSRVIAFCALA---HSGDLHYAHTIFN 215

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
            + + +   WNT+I GY        A   F +M +  VE D  S V  L AC   + +  
Sbjct: 216 RVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALKACQQFETVFE 275

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
           G  ++ +V        +   N L+  Y + G +  AR VFD  S++DVVTWT+MI+GYA 
Sbjct: 276 GESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKDVVTWTTMIDGYAA 335

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           +     A+ +F+LM    V PN +T+ +++SACS +  L+ G+ +H    ++N+ C + +
Sbjct: 336 HDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEKVEEKNMRCSLSL 395

Query: 351 ETALIDMYAKCNLVKLSFQVFAR-------------------------------TSKKKT 379
             AL+DMY KC+ +  + ++F R                               T +K  
Sbjct: 396 HNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNA 455

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           V W+A++AG   N   +++++LF +M+   V P + TL S+L A   L  L     IH Y
Sbjct: 456 VCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQLTCLNLGDWIHQY 515

Query: 440 LIRYGFLSV-VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
            +    + + V +   ++D+Y+KCGS+++A ++FS +P  +++++ W+ +IAGY  +G  
Sbjct: 516 FVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMP--ERNLISWNTMIAGYAANGRA 573

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
           + A+++F +M   G +PN +TF S L ACSHGGL+ EG + F+ M   +       HY C
Sbjct: 574 KQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYGIKPERGHYAC 633

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
           +VDLLGR G L+EAY LI  MP++P  A WGALL AC +HGNVEL  ++A  L  L+PE+
Sbjct: 634 MVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRLDPED 693

Query: 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            G YVLL+   +  R+W D   VR +M +KG++K P +SLIE+
Sbjct: 694 SGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEI 736



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 161/538 (29%), Positives = 267/538 (49%), Gaps = 45/538 (8%)

Query: 2   NGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQL-----HAFIITSGPLFTHLRSSLVRA 56
           N P++  +   T L+++        K I     L     HAF ++    F  L  S    
Sbjct: 149 NSPTNVIITNPTLLIMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSGDLH 208

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           Y H      +F+ + + ++F++NT+++ Y        +   F+ M +L     D+ ++  
Sbjct: 209 YAHT-----IFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQL-RVEMDSRSFVF 262

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
            +KAC        G +++  V   GFD +  V N LI  Y   G +K AR+VFD   +  
Sbjct: 263 ALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESSDKD 322

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           VV+W T+I GY  +  ++EA+ VF+ ML S VEP+  ++++V+ AC  +  +EMG+ +HE
Sbjct: 323 VVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHE 382

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            V    +  +++  NAL+DMYVKC  + +AR +FDRM+ +DV +WTSM+NGYA  GD+ +
Sbjct: 383 KVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLES 442

Query: 297 A-------------------------------LGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           A                               L LF  M   GV P   T+ S+LSAC  
Sbjct: 443 ARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQ 502

Query: 326 LYYLKRGRSLHAW-TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
           L  L  G  +H +  + + +   V +E A++DMYAKC  +  + +VF+   ++  + WN 
Sbjct: 503 LTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNT 562

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-Y 443
           ++AG   NG A++A+ +F QM     EPN+ T  SLL A +    + +       + R Y
Sbjct: 563 MIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKY 622

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           G          ++D+  + G LE A+K+ + +P++  +   W  ++    MHG+ E A
Sbjct: 623 GIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCE-AAWGALLNACRMHGNVELA 679


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 221/642 (34%), Positives = 342/642 (53%), Gaps = 22/642 (3%)

Query: 33  KQLHAFIITSGPLFTHLR------SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMK 83
           KQLH   I  G    H R      +SLV  Y     V + R +F+ M +R+   + +++ 
Sbjct: 123 KQLHGLCIRCG----HDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLT 178

Query: 84  MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD 143
            Y Q+GA  D +++F  M   G + P++ T+  V+          LG  +H + +  G  
Sbjct: 179 GYIQDGALSDVMELFFRMRAEGVW-PNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCC 237

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
              FV N L+ MY   G V+ AR VF  M    +VSWNTL++G   N +  EAL +F   
Sbjct: 238 STVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDS 297

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
             S      ++  +V+  C  +K++ + R +H  V             AL+D Y K G +
Sbjct: 298 RSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQL 357

Query: 264 NEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
             A  +F  MS  ++VV+WT+MING   NGDV  A  LF  M+ +GV PN  T  ++L+A
Sbjct: 358 GNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA 417

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
             S+  L     +HA  IK N EC  IV TAL+  Y+K    + +  +F    +K  V W
Sbjct: 418 --SVASLPP--QIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSW 473

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI-LADLQQAMNIHCYLI 441
           +A+L      G +  A  +F +M +  ++PN+ T++S++ A A   A +      H   I
Sbjct: 474 SAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISI 533

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           ++     + VS+ L+ +Y++ GS+ESA  IF      D+D+V W+ +++GY  HG+ + A
Sbjct: 534 KHRCHDALCVSSALVSMYARKGSIESAQCIFERQ--TDRDLVSWNSMLSGYAQHGYSQKA 591

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561
           + +F++M   G++ + VTF S +  C+H GL++EG   F+ M  ++      +HY C+VD
Sbjct: 592 LDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVD 651

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGN 621
           L  RAG+LDEA  LI  M       VW  LLGAC +H NVELG++AA+ L  LEP +   
Sbjct: 652 LYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSAT 711

Query: 622 YVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           YVLLS +YSA  +WK+ + VR +MD K ++K    S I+++N
Sbjct: 712 YVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKN 753



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 160/544 (29%), Positives = 258/544 (47%), Gaps = 17/544 (3%)

Query: 61  SNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKA 120
           +  R  FDE+  R++   +  +  +A+ G+ H +L  FL + R             V+K 
Sbjct: 55  TGARQAFDEIPHRNTL--DHALFDHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKV 112

Query: 121 CTDLAWRKLGIALHGRVLITGFDM-DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           C  +  R LG  LHG  +  G D  D  VG  L+ MYM +  V   RKVF+AM + +VV+
Sbjct: 113 CGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVT 172

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           W +L++GY ++    + + +F  M   GV P+  +  SVL        +++GR +H    
Sbjct: 173 WTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSV 232

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
                  +   N+L++MY KCG V EAR+VF  M  RD+V+W +++ G  LNG    AL 
Sbjct: 233 KFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQ 292

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           LF   +         T  +++  C+++  L   R LH+  +K+       V TAL+D Y+
Sbjct: 293 LFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYS 352

Query: 360 KCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
           K   +  +  +F   S  +  V W A++ GC+ NG    A  LF +M  + V PND T +
Sbjct: 353 KAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYS 412

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           ++L A       Q    IH  +I+  +     V T L+  YSK  + E A  IF    I 
Sbjct: 413 TILTASVASLPPQ----IHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKM--ID 466

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
            KD+V WS ++  Y   G  + A ++F +M   G++PNE T +S + AC+       G+D
Sbjct: 467 QKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASP---TAGVD 523

Query: 539 L---FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           L   F+ +   H+        + +V +  R G ++ A  +      +     W ++L   
Sbjct: 524 LGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDL-VSWNSMLSGY 582

Query: 596 VIHG 599
             HG
Sbjct: 583 AQHG 586


>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
 gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
          Length = 605

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 191/547 (34%), Positives = 309/547 (56%), Gaps = 9/547 (1%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG-EVKAARKVFDAM 172
           Y  +++ C  +     G   H  V+ +G + D FVGN L+++Y   G +    R+VFD +
Sbjct: 63  YASLLQTCIKVDSFTRGRQFHAHVVKSGLETDRFVGNSLLSLYFKLGSDSLLTRRVFDGL 122

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
           +   VVSW ++I+GY +   +  A+ +F  ML SG+EP+  ++ +V+ AC  +  + +G+
Sbjct: 123 FVKDVVSWASMITGYVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACSEIGNLVLGK 182

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
             H +V       N    ++L+DMY +    ++AR +FD + E D V WT++I+ +  N 
Sbjct: 183 CFHGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTRND 242

Query: 293 DVRNALGLFQLM-QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
               ALG F L  +   + P++ T GS+L+AC +L  L++G  +HA  I       V+ E
Sbjct: 243 LYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRLRQGEEIHAKVIAYGFSGNVVTE 302

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
           ++L+DMY KC  V+ S ++F R S + +V W+A+LA   HNG   KAV LFR+M     E
Sbjct: 303 SSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREM----KE 358

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
            +  +  +++ A A LA +     IHC  IR G    V V + L+D+Y+KCG +  A+++
Sbjct: 359 VDLYSFGTVIRACAGLAAVTPGKEIHCQYIRKGGWRDVIVESALVDLYAKCGCINFAYRV 418

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F  +P ++  ++ W+ +I G+  +G    A+ +F+ M++ G++P+ ++F   L ACSH G
Sbjct: 419 FDRMPTRN--LITWNSMIHGFAQNGSSGIAIQIFEAMIKEGIKPDCISFIGLLFACSHTG 476

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
           L+D+    F+ M   +      +HY C+VDLLGRAG L+EA +LI     +   ++W  L
Sbjct: 477 LVDQARHYFDLMTGKYGIKPGVEHYNCMVDLLGRAGLLEEAENLIENAECRNDSSLWLVL 536

Query: 592 LGACVIH-GNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LGAC     N    E  AK L ELEP+   +YV L+ +Y AV RW DA  VR++M  + L
Sbjct: 537 LGACTTTCTNSATAERIAKKLMELEPQCYLSYVHLANVYRAVGRWDDAVKVRELMKNRQL 596

Query: 651 RKAPAHS 657
           +K P  S
Sbjct: 597 KKMPGQS 603



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 143/483 (29%), Positives = 250/483 (51%), Gaps = 13/483 (2%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSN----VRILFDE 69
           L   L+Q      S    +Q HA ++ SG      + +SL+  Y  + +     R +FD 
Sbjct: 62  LYASLLQTCIKVDSFTRGRQFHAHVVKSGLETDRFVGNSLLSLYFKLGSDSLLTRRVFDG 121

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           +  +    + +++  Y + G S  ++++F  ML  G   P+ +T   VIKAC+++    L
Sbjct: 122 LFVKDVVSWASMITGYVREGKSGIAIELFWDMLDSG-IEPNGFTLSAVIKACSEIGNLVL 180

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G   HG V+  GFD +  + + LI MY        AR++FD + E   V W T+IS + +
Sbjct: 181 GKCFHGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTR 240

Query: 190 NAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           N   +EAL  F    ++  + PD  +  SVL ACG L  +  G  IH  V       N+ 
Sbjct: 241 NDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRLRQGEEIHAKVIAYGFSGNVV 300

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             ++LVDMY KCG+V +++ +FDRMS R+ V+W++++  Y  NGD   A+ LF+ M+   
Sbjct: 301 TESSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREMK--- 357

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
              +  + G+++ AC+ L  +  G+ +H   I++    +VIVE+AL+D+YAKC  +  ++
Sbjct: 358 -EVDLYSFGTVIRACAGLAAVTPGKEIHCQYIRKGGWRDVIVESALVDLYAKCGCINFAY 416

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           +VF R   +  + WN+++ G   NG +  A+++F  M+ E ++P+  +   LL A +   
Sbjct: 417 RVFDRMPTRNLITWNSMIHGFAQNGSSGIAIQIFEAMIKEGIKPDCISFIGLLFACSHTG 476

Query: 429 DLQQAMNIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
            + QA +    +  +YG    VE    ++D+  + G LE A  +      ++ D  +W V
Sbjct: 477 LVDQARHYFDLMTGKYGIKPGVEHYNCMVDLLGRAGLLEEAENLIENAECRN-DSSLWLV 535

Query: 488 IIA 490
           ++ 
Sbjct: 536 LLG 538



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 111/370 (30%), Positives = 185/370 (50%), Gaps = 14/370 (3%)

Query: 51  SSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           SSL+  YG     S+ R LFDE+ E     + TV+  + +N    ++L  F    R    
Sbjct: 201 SSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTVISAFTRNDLYEEALGFFYLKHRAHRL 260

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PDNYT+  V+ AC +L   + G  +H +V+  GF  +    + L+ MY   G V+ +++
Sbjct: 261 CPDNYTFGSVLTACGNLGRLRQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQR 320

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +FD M   + VSW+ L++ Y  N   ++A+ +F  M     E D  S  +V+ AC  L  
Sbjct: 321 LFDRMSNRNSVSWSALLAVYCHNGDYEKAVNLFREM----KEVDLYSFGTVIRACAGLAA 376

Query: 228 IEMGRMIH--ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           +  G+ IH   +  GG   +++   +ALVD+Y KCG +N A  VFDRM  R+++TW SMI
Sbjct: 377 VTPGKEIHCQYIRKGG--WRDVIVESALVDLYAKCGCINFAYRVFDRMPTRNLITWNSMI 434

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS-LHAWTIKQNL 344
           +G+A NG    A+ +F+ M  EG++P+ ++   LL ACS    + + R      T K  +
Sbjct: 435 HGFAQNGSSGIAIQIFEAMIKEGIKPDCISFIGLLFACSHTGLVDQARHYFDLMTGKYGI 494

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELFR 403
           +  V     ++D+  +  L++ +  +      +  +  W  +L  C          E   
Sbjct: 495 KPGVEHYNCMVDLLGRAGLLEEAENLIENAECRNDSSLWLVLLGACTTTCTNSATAERIA 554

Query: 404 QMLVEVVEPN 413
           + L+E +EP 
Sbjct: 555 KKLME-LEPQ 563



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 152/323 (47%), Gaps = 7/323 (2%)

Query: 283 SMINGYALNGDVRNALGLFQLMQFEGVRPNS-LTIGSLLSACSSLYYLKRGRSLHAWTIK 341
           S I  +  +G + +AL L   +     R N  L   SLL  C  +    RGR  HA  +K
Sbjct: 29  SQILQFCKSGLLNDALHLLNSIDLYDSRINKPLLYASLLQTCIKVDSFTRGRQFHAHVVK 88

Query: 342 QNLECEVIVETALIDMYAKCNLVK-LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
             LE +  V  +L+ +Y K      L+ +VF     K  V W +++ G V  G +  A+E
Sbjct: 89  SGLETDRFVGNSLLSLYFKLGSDSLLTRRVFDGLFVKDVVSWASMITGYVREGKSGIAIE 148

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
           LF  ML   +EPN  TL++++ A + + +L      H  ++R GF S   + + LID+Y 
Sbjct: 149 LFWDMLDSGIEPNGFTLSAVIKACSEIGNLVLGKCFHGVVVRRGFDSNPVILSSLIDMYG 208

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK-EMVQSGVQPNEVT 519
           +      A ++F E+   + D V W+ +I+ +  +   E A+  F  +     + P+  T
Sbjct: 209 RNSVSSDARQLFDELL--EPDPVCWTTVISAFTRNDLYEEALGFFYLKHRAHRLCPDNYT 266

Query: 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
           F S L AC + G L +G ++   ++  +         + +VD+ G+ G ++++  L   M
Sbjct: 267 FGSVLTACGNLGRLRQGEEIHAKVIA-YGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRM 325

Query: 580 PLKPTHAVWGALLGACVIHGNVE 602
             + +   W ALL     +G+ E
Sbjct: 326 SNRNS-VSWSALLAVYCHNGDYE 347


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 197/607 (32%), Positives = 327/607 (53%), Gaps = 6/607 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +S+ R LFD M +R+   +  +M  YA N    ++ K+F  M R     PD  T+  +
Sbjct: 89  GDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTL-PDYVTFTTL 147

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTF--VGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           +  C D   +     +H   +  GFD + F  V N L+  Y     +  A  +F+ + + 
Sbjct: 148 LPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDK 207

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
             V++NTLI+GY K+    EA+ +F  M +SG +P   +   VL A   L +  +G+ +H
Sbjct: 208 DSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLH 267

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
            L       ++ +  N ++  Y K   V E R +F+ M E D V++  +I+ Y+      
Sbjct: 268 GLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYE 327

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            +L LF+ MQ  G    +    ++LS  ++L  L+ GR +H   I    +  + V  +L+
Sbjct: 328 ESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHVGNSLV 387

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           DMYAKC +   +  +F   S++ TV W A+++G V  GL    ++LF +M    +  + +
Sbjct: 388 DMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQS 447

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           T  ++L A A  A L     +H ++IR G L  V   +GL+D+Y+KCGS++ A ++F E+
Sbjct: 448 TFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEM 507

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
           P  D++ V W+ +I+ Y  +G GE A+  F +M+QSG+QP+ V+    L ACSH G +++
Sbjct: 508 P--DRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVEQ 565

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           G + F  M   +    +  HY C++DLLGR GR  EA  L+  MP +P   +W ++L AC
Sbjct: 566 GTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNAC 625

Query: 596 VIHGNVELGEVAAKWLFELEP-ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP 654
            I+ N  L E AA+ LF +E   +   YV +S +Y+A  +W++  +V+  M E+G++K P
Sbjct: 626 RIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRERGIKKVP 685

Query: 655 AHSLIEV 661
           A+S +EV
Sbjct: 686 AYSWVEV 692



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 115/463 (24%), Positives = 215/463 (46%), Gaps = 12/463 (2%)

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           +T   N +I+ Y+  G++ +AR +FDAM + +VV+W  L+  Y  N +  EA  +F  M 
Sbjct: 74  NTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMC 133

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN--IAAWNALVDMYVKCGS 262
           +S   PD  +  ++LP C           +H          N  +   N L+  Y +   
Sbjct: 134 RSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRR 193

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           ++ A ++F+ + ++D VT+ ++I GY  +G    A+ LF  M+  G +P+  T   +L A
Sbjct: 194 LDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKA 253

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
              L+    G+ LH  ++      +  V   ++  Y+K + V  +  +F    +   V +
Sbjct: 254 VVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSY 313

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           N +++         +++ LFR+M     +  +    ++L   A L+ LQ    +HC  I 
Sbjct: 314 NVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIV 373

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY---GMHGHGE 499
               S++ V   L+D+Y+KC   + A  IF    +  +  V W+ +I+GY   G+HG G 
Sbjct: 374 ATADSILHVGNSLVDMYAKCEMFDEAELIFKS--LSQRSTVSWTALISGYVQKGLHGAG- 430

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
             + LF +M  + ++ ++ TF + L A +    L  G  L  F++ +          + +
Sbjct: 431 --LKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGN-LENVFSGSGL 487

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           VD+  + G + +A  +   MP +     W AL+ A   +G+ E
Sbjct: 488 VDMYAKCGSIKDAVQVFEEMPDR-NAVSWNALISAYADNGDGE 529



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 157/306 (51%), Gaps = 9/306 (2%)

Query: 33  KQLHAFIITSGPLFTHLRS------SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYA 86
           +QLH   +T+G  F+   S           +  V   R LF+EM E     YN V+  Y+
Sbjct: 264 QQLHGLSVTTG--FSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYS 321

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           Q     +SL +F  M  +G ++  N+ +  ++    +L+  ++G  +H + ++   D   
Sbjct: 322 QAEQYEESLNLFREMQCMG-FDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSIL 380

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
            VGN L+ MY        A  +F ++ + S VSW  LISGY +       L +F  M  +
Sbjct: 381 HVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGA 440

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
            +  D ++  +VL A      + +G+ +H  +      +N+ + + LVDMY KCGS+ +A
Sbjct: 441 NLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDA 500

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
             VF+ M +R+ V+W ++I+ YA NGD   A+G F  M   G++P+S++I  +L ACS  
Sbjct: 501 VQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHC 560

Query: 327 YYLKRG 332
            ++++G
Sbjct: 561 GFVEQG 566



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 160/361 (44%), Gaps = 14/361 (3%)

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
           KN  + N ++  YVK G ++ AR +FD M +R VVTWT ++  YA N     A  LF+ M
Sbjct: 73  KNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQM 132

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI--VETALIDMYAKCN 362
                 P+ +T  +LL  C+          +HA+ +K   +  +   V   L+  Y +  
Sbjct: 133 CRSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVR 192

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            + L+  +F     K +V +N ++ G   +GL  +A+ LF +M     +P+D T + +L 
Sbjct: 193 RLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLK 252

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A   L D      +H   +  GF     V   ++  YSK   +     +F+E+P  + D 
Sbjct: 253 AVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMP--ELDF 310

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
           V ++V+I+ Y      E +++LF+EM   G       F + L   ++   L  G      
Sbjct: 311 VSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQ---- 366

Query: 543 MLENHQTCSRADHY----TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
            +      + AD        +VD+  +    DEA  + +++  + T   W AL+   V  
Sbjct: 367 -VHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRST-VSWTALISGYVQK 424

Query: 599 G 599
           G
Sbjct: 425 G 425


>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1359

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 204/641 (31%), Positives = 349/641 (54%), Gaps = 14/641 (2%)

Query: 33   KQLHAFIITS---GPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSF-LYNTVMKMY 85
            KQ+H +++ +   G  F  L+++L+  Y   G  ++   +F E+ ++S+  L+N ++  +
Sbjct: 689  KQIHGYMLRNSLDGDSF--LKTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGF 746

Query: 86   AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
              +     SL++++ + +       + ++   + AC+       G  +H  V+  G D D
Sbjct: 747  GGSEICESSLELYM-LAKSNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVKMGLDND 805

Query: 146  TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
             +V   L++MY   G V  A  VF  + +  +  WN +++ Y +N     AL +F +M +
Sbjct: 806  PYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQ 865

Query: 206  SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
              V PD  ++ +V+  C      + G+ +H  +    +    A  +AL+ +Y KCG   +
Sbjct: 866  KSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDTD 925

Query: 266  ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE--GVRPNSLTIGSLLSAC 323
            A LVF  M E+D+V W S+I+G   NG  + AL +F  M+ +   ++P+S  + S+++AC
Sbjct: 926  AYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINAC 985

Query: 324  SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
            + L  L  G  +H   IK      V V ++LID+Y+KC L +++ +VF     +  V WN
Sbjct: 986  AGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAWN 1045

Query: 384  AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
            ++++    N L   ++ELF  ML + + P+  ++ S+L A +  A L +  ++H Y +R 
Sbjct: 1046 SMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRL 1105

Query: 444  GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
            G  S   +   LID+Y KCG  + A  IF ++  + K ++ W+++I GYG HG   TA+S
Sbjct: 1106 GIPSDTHLKNALIDMYVKCGFSKYAENIFKKM--QHKSLITWNLMIYGYGSHGDCRTALS 1163

Query: 504  LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563
            LF E+ ++G  P++VTF S + AC+H G ++EG + F  M +++    + +HY  +VDLL
Sbjct: 1164 LFDELKKAGETPDDVTFLSLISACNHSGFVEEGKNFFEIMKQDYGIEPKMEHYANMVDLL 1223

Query: 564  GRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623
            GRAGRL+EAY  I+ MP +   ++W  LL A   H NVELG ++A+ L  +EPE    YV
Sbjct: 1224 GRAGRLEEAYSFIKAMPTEADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGSTYV 1283

Query: 624  LLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
             L  LY       +A  +   M E+GL+K P  S IEV +I
Sbjct: 1284 QLINLYMEAGLKNEAAKLLGEMKERGLQKQPGCSWIEVSDI 1324



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 148/509 (29%), Positives = 251/509 (49%), Gaps = 33/509 (6%)

Query: 112  YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            +T+P ++KAC+ L     G  +HG +++ G+  D F+   L+ MY+  G +  A +VFD 
Sbjct: 562  FTFPSLLKACSSLTNLSSGKTIHGSIIVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDG 621

Query: 172  MWEHSVVS------WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS---VVSVLPAC 222
             W  S VS       N++I GYFK    KE +  F  ML  GV PD  S   VVSVL   
Sbjct: 622  -WSQSGVSARDVTVCNSMIDGYFKFRRFKEGVGCFRRMLVLGVRPDAFSLSIVVSVLCKE 680

Query: 223  GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER-DVVTW 281
            G  +  E G+ IH  +    L  +     AL+DMY K G   +A  VF  + ++ +VV W
Sbjct: 681  GNFRR-EDGKQIHGYMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVFVEIEDKSNVVLW 739

Query: 282  TSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
              MI G+  +    ++L L+ L +   V+  S +    L ACS       GR +H   +K
Sbjct: 740  NVMIVGFGGSEICESSLELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGRQIHCDVVK 799

Query: 342  QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVEL 401
              L+ +  V T+L+ MY+KC +V  +  VF+    K+   WNA++A  V N     A+EL
Sbjct: 800  MGLDNDPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALEL 859

Query: 402  FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
            F  M  + V P+  TL++++   ++        ++H  L +    S   + + L+ +YSK
Sbjct: 860  FGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSK 919

Query: 462  CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV--QSGVQPNEVT 519
            CG    A+ +F    +++KD+V W  +I+G   +G  + A+ +F +M      ++P+   
Sbjct: 920  CGCDTDAYLVFKS--MEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDI 977

Query: 520  FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY------TCIVDLLGRAGRLDEAY 573
             TS ++AC+       GL+  +F L+ H +  +          + ++DL  + G  + A 
Sbjct: 978  MTSVINACA-------GLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMAL 1030

Query: 574  DLIRTMPLKPTHAV-WGALLGACVIHGNV 601
             +  +M  +P + V W +++ +C    N+
Sbjct: 1031 KVFTSM--RPENIVAWNSMI-SCYSRNNL 1056


>gi|224122888|ref|XP_002318941.1| predicted protein [Populus trichocarpa]
 gi|222857317|gb|EEE94864.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 200/515 (38%), Positives = 297/515 (57%), Gaps = 6/515 (1%)

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           L+  Y   G    AR +FD M E  VV+W T+ISGY       +A  VF  M+K+G +P 
Sbjct: 50  LLKSYFERGLTSQARNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVKNGNDPP 109

Query: 212 CA-SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN-IAAWNALVDMYVKCG-SVNEARL 268
            A ++ SVL AC  +K +  GR++H L    R  +  I   NAL+DMY  CG  + +A +
Sbjct: 110 NAFTISSVLKACKGMKRVFCGRLVHGLAIKRRFMEGFIYVDNALMDMYASCGVGMRDACV 169

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VF  + E++VV+WT++I GY   G+   AL +F+ M  +GV  N  +I   + AC+S+  
Sbjct: 170 VFHDIKEKNVVSWTTLIAGYTHRGNGNRALQIFREMLLDGVALNPHSISIAVRACASIGS 229

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
              GR +H   IK   E ++ V  +++DMY +C  +  + + F   ++K  + WN ++AG
Sbjct: 230 QNFGRQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMTEKDLITWNTLIAG 289

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
                 + +   +F QM  E   PN  T  SL+ A A  A LQ    +H  + R G    
Sbjct: 290 -YERSDSIEPFFIFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRGLDGN 348

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           +E++  LID+Y+KCG++  + K FSE+   +  +V W+ ++ GYG HG+G+ AV LF EM
Sbjct: 349 LELANALIDMYAKCGNIIDSQKNFSEMSCTN--LVSWTSMMIGYGTHGYGKEAVELFDEM 406

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
           V+SG++P++V F + LHACSH GL+D+GL   N M+ ++      + Y C+VDLLGR GR
Sbjct: 407 VRSGIRPDQVVFMAVLHACSHAGLVDQGLRYINCMINDYHIKPNQEIYGCVVDLLGRPGR 466

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           +++AY LIR+MP     +VWGALLGAC  H    LG++AAK    L P     YV+LS +
Sbjct: 467 VEDAYQLIRSMPFMADESVWGALLGACKAHNFSRLGKLAAKKALALRPNMVETYVMLSNI 526

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           Y+A  +W +A  +R +M   G RK    S IEVRN
Sbjct: 527 YAAEGKWGEAARMRKLMKRAGCRKVAGRSWIEVRN 561



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 136/456 (29%), Positives = 228/456 (50%), Gaps = 14/456 (3%)

Query: 49  LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           L + L+++Y   G  S  R LFDEM ER    + T++  Y        +  +F+ M++ G
Sbjct: 46  LATDLLKSYFERGLTSQARNLFDEMPERDVVAWTTMISGYTHCNEYTQAWSVFVDMVKNG 105

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHG----RVLITGFDMDTFVGNCLIAMYMNFG- 160
              P+ +T   V+KAC  +     G  +HG    R  + GF    +V N L+ MY + G 
Sbjct: 106 NDPPNAFTISSVLKACKGMKRVFCGRLVHGLAIKRRFMEGF---IYVDNALMDMYASCGV 162

Query: 161 EVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLP 220
            ++ A  VF  + E +VVSW TLI+GY        AL +F  ML  GV  +  S+   + 
Sbjct: 163 GMRDACVVFHDIKEKNVVSWTTLIAGYTHRGNGNRALQIFREMLLDGVALNPHSISIAVR 222

Query: 221 ACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT 280
           AC  +     GR IH  V       ++   N+++DMY +CG ++EA   F+ M+E+D++T
Sbjct: 223 ACASIGSQNFGRQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMTEKDLIT 282

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           W ++I GY    D      +F  M+ EG  PN  T  SL++AC++   L+ G+ +H    
Sbjct: 283 WNTLIAGYE-RSDSIEPFFIFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQVHGGIF 341

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
           ++ L+  + +  ALIDMYAKC  +  S + F+  S    V W +++ G   +G  ++AVE
Sbjct: 342 RRGLDGNLELANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGYGKEAVE 401

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN-IHCYLIRYGFLSVVEVSTGLIDIY 459
           LF +M+   + P+     ++L A +    + Q +  I+C +  Y      E+   ++D+ 
Sbjct: 402 LFDEMVRSGIRPDQVVFMAVLHACSHAGLVDQGLRYINCMINDYHIKPNQEIYGCVVDLL 461

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
            + G +E A+++   +P    D  VW  ++     H
Sbjct: 462 GRPGRVEDAYQLIRSMPFM-ADESVWGALLGACKAH 496



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 151/317 (47%), Gaps = 16/317 (5%)

Query: 14  HLVIKLVQQYAATKSIAGTKQLHAFIITSG-----PLFTHLRSSLVRAYGHVSNVRILFD 68
           H +   V+  A+  S    +Q+H  +I  G     P+   +     R  G +S     F+
Sbjct: 215 HSISIAVRACASIGSQNFGRQIHTAVIKHGFESDLPVTNSILDMYCRC-GCLSEANKYFN 273

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFL--GMLRLGEYNPDNYTYPIVIKACTDLAW 126
           +M+E+    +NT++  Y ++    DS++ F     +    ++P+ +T+  ++ AC + A 
Sbjct: 274 DMTEKDLITWNTLIAGYERS----DSIEPFFIFSQMESEGFSPNCFTFTSLVAACANAAA 329

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
            + G  +HG +   G D +  + N LI MY   G +  ++K F  M   ++VSW +++ G
Sbjct: 330 LQCGQQVHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIG 389

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGK 245
           Y  + Y KEA+ +FD M++SG+ PD    ++VL AC +   ++ G R I+ ++    +  
Sbjct: 390 YGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACSHAGLVDQGLRYINCMINDYHIKP 449

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNALGLFQLM 304
           N   +  +VD+  + G V +A  +   M    D   W +++     +   R  LG     
Sbjct: 450 NQEIYGCVVDLLGRPGRVEDAYQLIRSMPFMADESVWGALLGACKAHNFSR--LGKLAAK 507

Query: 305 QFEGVRPNSLTIGSLLS 321
           +   +RPN +    +LS
Sbjct: 508 KALALRPNMVETYVMLS 524


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 208/594 (35%), Positives = 321/594 (54%), Gaps = 73/594 (12%)

Query: 101 MLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG 160
           ML  G+Y PD+  +P V+K+CT +   + G ++HG               C+I + M F 
Sbjct: 1   MLASGKY-PDHNVFPSVLKSCTLMKDLRFGESVHG---------------CIIRLGMGF- 43

Query: 161 EVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLP 220
                           + + N L++ Y K          F  + + GV+  C S   +L 
Sbjct: 44  ---------------DLYTCNALMNMYSK----------FWSLEEGGVQRFCDS--KMLG 76

Query: 221 ACGYLKEIEMGRMIHEL-------VAG----GRLG------------KNIAAWNALVDMY 257
                +EI      H+L       VAG    G L             K +       D+Y
Sbjct: 77  GIPEPREIGKCSNSHDLPCELDERVAGIDQNGDLNQMSNILYQVNTYKKVFDEGKTSDVY 136

Query: 258 VKCGS----VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
            K       +   R VF+ M +RD+V+W ++I+G A NG   +AL + + M    +RP+S
Sbjct: 137 SKKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDS 196

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            T+ S+L   +    L +G+ +H + I+   + +V + ++LIDMYAKC  V  S +VF  
Sbjct: 197 FTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYM 256

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
             +   + WN+I+AGCV NG+  + ++ F+QML+  ++PN  + +S++PA A L  L   
Sbjct: 257 LPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLG 316

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             +H Y+IR  F   V +++ L+D+Y+KCG++ +A  IF ++ + D  +V W+ +I GY 
Sbjct: 317 KQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYD--MVSWTAMIMGYA 374

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
           +HGH   A+SLFK M   GV+PN V F + L ACSH GL+DE    FN M ++++     
Sbjct: 375 LHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGL 434

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
           +HY  + DLLGR GRL+EAY+ I  M ++PT +VW  LL AC +H N+EL E  +K LF 
Sbjct: 435 EHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFT 494

Query: 614 LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           ++P+N G YVLLS +YSA  RWKDA  +R  M +KG++K PA S IE++N + A
Sbjct: 495 VDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHA 548



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 206/385 (53%), Gaps = 27/385 (7%)

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
           ++ ++R +F+ M +R    +NTV+   AQNG   D+L M   M    +  PD++T   V+
Sbjct: 145 YLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGN-ADLRPDSFTLSSVL 203

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
               +      G  +HG  +  G+D D F+G+ LI MY     V  + +VF  + +H  +
Sbjct: 204 PIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGI 263

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           SWN++I+G  +N    E L  F  ML + ++P+  S  S++PAC +L  + +G+ +H  +
Sbjct: 264 SWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYI 323

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
              R   N+   +ALVDMY KCG++  AR +FD+M   D+V+WT+MI GYAL+G   +A+
Sbjct: 324 IRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAI 383

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW----TIKQNLECEVIVE--T 352
            LF+ M+ EGV+PN +   ++L+ACS       G    AW    ++ Q+      +E   
Sbjct: 384 SLFKRMEVEGVKPNYVAFMAVLTACSHA-----GLVDEAWKYFNSMTQDYRIIPGLEHYA 438

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVP-WNAILAGC-VHNGLARKAVELFRQMLVEV- 409
           A+ D+  +   ++ +++  +    + T   W+ +LA C VH     K +EL  ++  ++ 
Sbjct: 439 AVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVH-----KNIELAEKVSKKLF 493

Query: 410 -VEPNDATLNSLLPAYAILADLQQA 433
            V+P +      + AY +L+++  A
Sbjct: 494 TVDPQN------IGAYVLLSNIYSA 512


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 218/613 (35%), Positives = 331/613 (53%), Gaps = 20/613 (3%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVM-KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           G V++ R +FD M      +  T M    A+NGA  +SL +   ML  G   P+ YT   
Sbjct: 98  GAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEMLESGLL-PNAYTLCA 156

Query: 117 VIKAC--TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
           V  AC   +L     G+ L     +  +  D  VG+ LI M    G++ +ARKVFD + E
Sbjct: 157 VAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIE 216

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
            +VV W  LIS Y +   A+EA+ +F   L+ G EPD  ++ S++ AC  L  + +G  +
Sbjct: 217 KTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQL 276

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCG---SVNEARLVFDRMSERDVVTWTSMINGYALN 291
           H L        +      LVDMY K     +++ A  VF+RM + DV++WT++I+GY  +
Sbjct: 277 HSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQS 336

Query: 292 GDVRN-ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           G   N  + LF  M  E ++PN +T  S+L AC+++     GR +HA  IK N      V
Sbjct: 337 GVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTV 396

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
             AL+ MYA+   ++ + +VF +  ++  +        C+  G          +M + + 
Sbjct: 397 GNALVSMYAESGCMEEARRVFNQLYERSMI-------SCITEGRDAPLDHRIGRMDMGI- 448

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
             + +T  SL+ A A +  L +   +H   ++ GF S   VS  L+ +YS+CG LE A +
Sbjct: 449 --SSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACR 506

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
            F+E+  KD++++ W+ +I+G   HG+ E A+SLF +M+ +GV+PN+VT+ + L ACSH 
Sbjct: 507 SFNEL--KDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHV 564

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           GL+ EG + F  M  +H    R +HY C+VDLL R+G + EA + I  MPLK    VW  
Sbjct: 565 GLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKT 624

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LLGAC  H N+E+GE+AAK + ELEP +P  YVLLS LY+    W +   +R  M +  L
Sbjct: 625 LLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNL 684

Query: 651 RKAPAHSLIEVRN 663
            K    S +EV N
Sbjct: 685 NKETGLSWMEVEN 697



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 145/519 (27%), Positives = 249/519 (47%), Gaps = 53/519 (10%)

Query: 128 KLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE-HSVVSWNTLIS 185
           +LG ALH R+L     D D  V N L+ +Y   G V +AR VFD M     +VSW  + S
Sbjct: 65  RLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMAS 124

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI------EMGRMIHELVA 239
              +N   +E+L++   ML+SG+ P+  ++ +V  AC +  E+       +  ++H++  
Sbjct: 125 CLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHAC-FPHELYCLVGGVVLGLVHKM-- 181

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
            G  G +IA  +AL+DM  + G +  AR VFD + E+ VV WT +I+ Y        A+ 
Sbjct: 182 -GLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVE 240

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           +F     +G  P+  T+ S++SAC+ L  ++ G  LH+  ++     +  V   L+DMYA
Sbjct: 241 IFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYA 300

Query: 360 KCNL---VKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR-KAVELFRQMLVEVVEPNDA 415
           K N+   +  + +VF R  K   + W A+++G V +G+   K + LF +ML E ++PN  
Sbjct: 301 KSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHI 360

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           T +S+L A A ++D      +H ++I+    +   V   L+ +Y++ G +E A ++F+++
Sbjct: 361 TYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQL 420

Query: 476 ---------------PIKDK----DIVVWSVIIAGY-------GMHGHGETAVSLFKEMV 509
                          P+  +    D+ + S   A         GM   G+    L    +
Sbjct: 421 YERSMISCITEGRDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQ---QLHAMTL 477

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           ++G   +     S +   S  G L++    FN  L++    S    +T ++  L + G  
Sbjct: 478 KAGFGSDRFVSNSLVSMYSRCGYLEDACRSFN-ELKDRNVIS----WTSMISGLAKHGYA 532

Query: 570 DEAYDLIRTMPL---KPTHAVWGALLGACVIHGNVELGE 605
           + A  L   M L   KP    + A+L AC   G V  G+
Sbjct: 533 ERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGK 571



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 189/354 (53%), Gaps = 11/354 (3%)

Query: 227 EIEMGRMIHE-LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-RDVVTWTSM 284
           ++ +GR +H  L+ G  L ++    N+L+ +Y +CG+V  AR VFD M   RD+V+WT+M
Sbjct: 63  DLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAM 122

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC-SSLYYLKRGRSLHAWTIKQN 343
            +  A NG  R +L L   M   G+ PN+ T+ ++  AC     Y   G  +     K  
Sbjct: 123 ASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMG 182

Query: 344 L-ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
           L   ++ V +ALIDM A+   +  + +VF    +K  V W  +++  V    A +AVE+F
Sbjct: 183 LWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIF 242

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
              L +  EP+  T++S++ A   L  ++  + +H   +R GF S   VS GL+D+Y+K 
Sbjct: 243 LDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKS 302

Query: 463 G---SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS-LFKEMVQSGVQPNEV 518
               +++ A+K+F    ++  D++ W+ +I+GY   G  E  V  LF EM+   ++PN +
Sbjct: 303 NIEQAMDYANKVFER--MRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHI 360

Query: 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572
           T++S L AC++    D G  +   +++++Q  +       +V +   +G ++EA
Sbjct: 361 TYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVG-NALVSMYAESGCMEEA 413


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 200/518 (38%), Positives = 292/518 (56%), Gaps = 32/518 (6%)

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
           S  SW   +    ++   +EA+  +  M  SG  PD  +  +VL A   L++++ G  IH
Sbjct: 56  STASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIH 115

Query: 236 ELVAG---------------------GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
                                     G +G      NAL+ MY K G V++++ +F+   
Sbjct: 116 AAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFV 175

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
           +RD+V+W +MI+ ++ +     AL  F+LM  EGV  + +TI S+L ACS L  L  G+ 
Sbjct: 176 DRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKE 235

Query: 335 LHAWTIKQNLECE-VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
           +HA+ ++ N   E   V +AL+DMY  C  V+   +VF     ++   WNA+++G   NG
Sbjct: 236 IHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNG 295

Query: 394 LARKAVELFRQML-VEVVEPNDATLNSLLPAYA-ILADLQQAMNIHCYLIRYGFLSVVEV 451
           L  KA+ LF +M+ V  + PN  T+ S++PA    LA + +   IH Y IR    S + V
Sbjct: 296 LDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITV 355

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
            + L+D+Y+KCG L  + ++F+E+P  +K+++ W+V+I   GMHG GE A+ LFK MV  
Sbjct: 356 GSALVDMYAKCGCLNLSRRVFNEMP--NKNVITWNVLIMACGMHGKGEEALELFKNMVAE 413

Query: 512 G-----VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
                  +PNEVTF +   ACSH GL+ EGL+LF  M  +H     +DHY C+VDLLGRA
Sbjct: 414 AGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRA 473

Query: 567 GRLDEAYDLIRTMPLKPTH-AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           G+L+EAY+L+ TMP +      W +LLGAC IH NVELGEVAAK L  LEP    +YVLL
Sbjct: 474 GQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLL 533

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           S +YS+   W  A  VR  M + G++K P  S IE R+
Sbjct: 534 SNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRD 571



 Score =  226 bits (577), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 138/475 (29%), Positives = 244/475 (51%), Gaps = 35/475 (7%)

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           RS+  +   ++   ++    +++  ++ M   G   PDN+ +P V+KA + L   K G  
Sbjct: 55  RSTASWVDALRSRTRSNDFREAISTYIEMTVSGA-RPDNFAFPAVLKAVSGLQDLKTGEQ 113

Query: 133 LHGRVLITGFDMD---------------------TFVGNCLIAMYMNFGEVKAARKVFDA 171
           +H   +  G+                        TF  N L+AMY   G V  ++ +F++
Sbjct: 114 IHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFES 173

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
             +  +VSWNT+IS + ++    EAL  F  M+  GVE D  ++ SVLPAC +L+ +++G
Sbjct: 174 FVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVG 233

Query: 232 RMIHELV-AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
           + IH  V     L +N    +ALVDMY  C  V   R VFD +  R +  W +MI+GYA 
Sbjct: 234 KEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYAR 293

Query: 291 NGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSAC-SSLYYLKRGRSLHAWTIKQNLECEV 348
           NG    AL LF ++++  G+ PN+ T+ S++ AC  SL  + +G+ +HA+ I+  L  ++
Sbjct: 294 NGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDI 353

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            V +AL+DMYAKC  + LS +VF     K  + WN ++  C  +G   +A+ELF+ M+ E
Sbjct: 354 TVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAE 413

Query: 409 V-----VEPNDATLNSLLPAYAILADLQQAMNIHCYLIR--YGFLSVVEVSTGLIDIYSK 461
                  +PN+ T  ++  A +    + + +N+  Y ++  +G     +    ++D+  +
Sbjct: 414 AGRGGEAKPNEVTFITVFAACSHSGLISEGLNLF-YRMKHDHGVEPTSDHYACVVDLLGR 472

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
            G LE A+++ + +P +   +  WS ++    +H + E      K ++   ++PN
Sbjct: 473 AGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLH--LEPN 525



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 181/345 (52%), Gaps = 16/345 (4%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V + + LF+   +R    +NT++  ++Q+    ++L  F  M+  G    D  T   V
Sbjct: 162 GRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEG-VELDGVTIASV 220

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDM--DTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           + AC+ L    +G  +H  VL    D+  ++FVG+ L+ MY N  +V++ R+VFD +   
Sbjct: 221 LPACSHLERLDVGKEIHAYVLRNN-DLIENSFVGSALVDMYCNCRQVESGRRVFDHILGR 279

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGY-LKEIEMGRM 233
            +  WN +ISGY +N   ++AL++F  M+K +G+ P+  ++ SV+PAC + L  I  G+ 
Sbjct: 280 RIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKE 339

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           IH       L  +I   +ALVDMY KCG +N +R VF+ M  ++V+TW  +I    ++G 
Sbjct: 340 IHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGK 399

Query: 294 VRNALGLFQLMQFEGVR-----PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
              AL LF+ M  E  R     PN +T  ++ +ACS    +  G +L  + +K +   E 
Sbjct: 400 GEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLF-YRMKHDHGVEP 458

Query: 349 IVE--TALIDMYAKCNLVKLSFQVFARTSKK--KTVPWNAILAGC 389
             +    ++D+  +   ++ ++++      +  K   W+++L  C
Sbjct: 459 TSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGAC 503



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 142/303 (46%), Gaps = 16/303 (5%)

Query: 33  KQLHAFIITSGPLF--THLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQ 87
           K++HA+++ +  L   + + S+LV  Y +   V   R +FD +  R   L+N ++  YA+
Sbjct: 234 KEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYAR 293

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT-DLAWRKLGIALHGRVLITGFDMDT 146
           NG    +L +F+ M+++    P+  T   V+ AC   LA    G  +H   +      D 
Sbjct: 294 NGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDI 353

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
            VG+ L+ MY   G +  +R+VF+ M   +V++WN LI     +   +EAL +F  M+  
Sbjct: 354 TVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAE 413

Query: 207 G-----VEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAAWNALVDMYVKC 260
                  +P+  + ++V  AC +   I  G  + + +     +      +  +VD+  + 
Sbjct: 414 AGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRA 473

Query: 261 GSVNEARLVFDRM-SERDVV-TWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           G + EA  + + M +E D V  W+S++    ++ +V   LG         + PN  +   
Sbjct: 474 GQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVE--LGEVAAKNLLHLEPNVASHYV 531

Query: 319 LLS 321
           LLS
Sbjct: 532 LLS 534



 Score = 43.1 bits (100), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 90/188 (47%), Gaps = 13/188 (6%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLR--SSLVRAY---GHVSNV 63
           LP TT +   +     +  +IA  K++HA+ I +  L + +   S+LV  Y   G ++  
Sbjct: 314 LPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNM-LASDITVGSALVDMYAKCGCLNLS 372

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGML----RLGEYNPDNYTYPIVIK 119
           R +F+EM  ++   +N ++     +G   ++L++F  M+    R GE  P+  T+  V  
Sbjct: 373 RRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFA 432

Query: 120 ACTDLAWRKLGIALHGRVLIT-GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH--S 176
           AC+       G+ L  R+    G +  +    C++ +    G+++ A ++ + M      
Sbjct: 433 ACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDK 492

Query: 177 VVSWNTLI 184
           V +W++L+
Sbjct: 493 VGAWSSLL 500


>gi|297818116|ref|XP_002876941.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322779|gb|EFH53200.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 652

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 208/606 (34%), Positives = 322/606 (53%), Gaps = 6/606 (0%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LFDEM +R S  +NT++  Y   G   +S  +F  M R G Y  D Y++  ++K      
Sbjct: 3   LFDEMPQRDSVSWNTMISGYTSCGKLENSWCLFTDMKRCGCY-VDGYSFSRLLKGIASAK 61

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
              LG  +HG V+  G++ + +VG+ L+ MY     V+ A   F  + E + VSWN LI+
Sbjct: 62  RFDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWNALIA 121

Query: 186 GYFKNAYAKEALVVFDWM-LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           G+ +    K A  +   M +K+ V  D  +   +L          + + +H  V    L 
Sbjct: 122 GFVQVRDTKTAFWLLGLMEMKAAVTMDDGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLE 181

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNALGLFQL 303
             I   NA++  Y  CG V++A+ VFD +   +D+++W SMI G + +    +A  LF  
Sbjct: 182 HEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAFELFTE 241

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK--C 361
           M    +  +  T   ++SACS   +   G+SLH   IK+ LE    V  ALI MY +   
Sbjct: 242 MHRNWIETDIYTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYIQFPT 301

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
            ++K +  +F     K  V WN+I+ G   NGL+  AV+ FR +    +E +D   +++L
Sbjct: 302 GVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAFSAVL 361

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            + + LA LQ     H    +  F S   V++ LI +YSKCG +E+A K F +I  K  +
Sbjct: 362 RSCSDLATLQLGQQTHALATKSSFESNEFVTSSLILMYSKCGVIENARKCFEQISSK-HN 420

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
            + W+ +I GY  HG G+ ++ LF +M    V+ + VTFT+ L ACSH GL+ EGL+L N
Sbjct: 421 TIAWNAMILGYAQHGSGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLN 480

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            M   ++   R +HY   VDLLGRAG +++  +LI +MPL P   V    LG C   G +
Sbjct: 481 SMEPVYKIQPRMEHYAAAVDLLGRAGLVNKVKELIESMPLNPDPMVLKTFLGVCRACGEI 540

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           E+    A  L E+EPE+   YV LS +YS +++W++  NV+ +M E+G++K P  S IE+
Sbjct: 541 EMATQVANHLLEIEPEDHFAYVSLSHMYSDLKKWEEKANVKKMMKERGVKKVPGWSWIEI 600

Query: 662 RNILTA 667
           RN + A
Sbjct: 601 RNQVNA 606



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 116/444 (26%), Positives = 202/444 (45%), Gaps = 19/444 (4%)

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           ++FD M +   VSWNT+ISGY      + +  +F  M + G   D  S   +L      K
Sbjct: 2   RLFDEMPQRDSVSWNTMISGYTSCGKLENSWCLFTDMKRCGCYVDGYSFSRLLKGIASAK 61

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
             ++G  +H LV  G    N+   ++LVDMY KC  V +A   F  + E + V+W ++I 
Sbjct: 62  RFDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWNALIA 121

Query: 287 GYALNGDVRNALGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           G+    D + A  L  LM+ +  V  +  T   LL+      +    + +HA  +K  LE
Sbjct: 122 GFVQVRDTKTAFWLLGLMEMKAAVTMDDGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLE 181

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVF-ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
            E+ +  A+I  YA C LV  + +VF      K  + WN+++AG   +     A ELF +
Sbjct: 182 HEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAFELFTE 241

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK--C 462
           M    +E +  T   ++ A +         ++H  +I+ G   V  VS  LI +Y +   
Sbjct: 242 MHRNWIETDIYTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYIQFPT 301

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G ++ A  +F    +K KD+V W+ I+ G+  +G  E AV  F+ +  S ++ ++  F++
Sbjct: 302 GVMKDALSLFE--SLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAFSA 359

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADH------YTCIVDLLGRAGRLDEAYDLI 576
            L +CS    L  G        + H   +++         + ++ +  + G ++ A    
Sbjct: 360 VLRSCSDLATLQLG-------QQTHALATKSSFESNEFVTSSLILMYSKCGVIENARKCF 412

Query: 577 RTMPLKPTHAVWGALLGACVIHGN 600
             +  K     W A++     HG+
Sbjct: 413 EQISSKHNTIAWNAMILGYAQHGS 436



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 129/249 (51%), Gaps = 9/249 (3%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY-----GHVSNVRILFDEMSERSSFLYNTVMKMYA 86
           K LH  +I  G    T + ++L+  Y     G + +   LF+ +  +    +N++M  ++
Sbjct: 271 KSLHGLVIKKGLEQVTSVSNALISMYIQFPTGVMKDALSLFESLKPKDLVSWNSIMTGFS 330

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           QNG S D++K F   LR      D+Y +  V+++C+DLA  +LG   H     + F+ + 
Sbjct: 331 QNGLSEDAVK-FFRYLRSSNIEVDDYAFSAVLRSCSDLATLQLGQQTHALATKSSFESNE 389

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAM-WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
           FV + LI MY   G ++ ARK F+ +  +H+ ++WN +I GY ++   + +L +F  M  
Sbjct: 390 FVTSSLILMYSKCGVIENARKCFEQISSKHNTIAWNAMILGYAQHGSGQVSLDLFSQMCN 449

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
             V+ D  +  ++L AC +   I+ G  +++ +    ++   +  + A VD+  + G VN
Sbjct: 450 QNVKLDHVTFTAILTACSHTGLIQEGLELLNSMEPVYKIQPRMEHYAAAVDLLGRAGLVN 509

Query: 265 EARLVFDRM 273
           + + + + M
Sbjct: 510 KVKELIESM 518


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 188/533 (35%), Positives = 307/533 (57%), Gaps = 2/533 (0%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H  +L  G D DT++ N ++    NFG    + ++ D   E ++  +NT+I G   N  
Sbjct: 29  IHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDC 88

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            +E++ ++  M K G+ PD  +   VL AC  + + E+G  +H LV       +     +
Sbjct: 89  FQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKIS 148

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+++Y KCG ++ A  VFD + +++  +WT+ I+GY   G  R A+ +F+ +   G+RP+
Sbjct: 149 LINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPD 208

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           S ++  +LSAC     L+ G  +  +  +  +   V V TAL+D Y KC  ++ +  VF 
Sbjct: 209 SFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFD 268

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
              +K  V W++++ G   NGL ++A++LF +ML E ++P+   +  +L + A L  L+ 
Sbjct: 269 GMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALEL 328

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
                  +    FL    + T LID+Y+KCG ++ A ++F    ++ KD VVW+  I+G 
Sbjct: 329 GDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFR--GMRKKDRVVWNAAISGL 386

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
            M GH + A+ LF +M +SG++P+  TF   L AC+H GL++EG   FN M         
Sbjct: 387 AMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPE 446

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
            +HY C+VDLLGRAG LDEA+ LI++MP++    VWGALLG C +H + +L EV  K L 
Sbjct: 447 IEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVVLKKLI 506

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
            LEP + GNYVLLS +Y+A  +W++A  +R +M E+G++K P +S IEV  ++
Sbjct: 507 ALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVV 559



 Score =  244 bits (624), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 156/532 (29%), Positives = 277/532 (52%), Gaps = 21/532 (3%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVR---AYGHVSNVR 64
           + K+  +  +L+Q ++  K +   K +HA ++  G    T+L + ++R    +G+ +   
Sbjct: 6   VTKSAGIKNRLIQGFSCLKHL---KHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSF 62

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
            + D+  E + FL+NT+++    N    +S++++  M + G  +PD++T+P V+KAC  +
Sbjct: 63  RILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEG-LSPDSFTFPFVLKACARV 121

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
              +LG+ +H  V+  G + D FV   LI +Y   G +  A KVFD + + +  SW   I
Sbjct: 122 LDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATI 181

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           SGY      +EA+ +F  +L+ G+ PD  S+V VL AC    ++  G  I E +    + 
Sbjct: 182 SGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMV 241

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
           +N+    ALVD Y KCG++  AR VFD M E+++V+W+SMI GYA NG  + AL LF  M
Sbjct: 242 RNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKM 301

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
             EG++P+   +  +L +C+ L  L+ G                ++ TALIDMYAKC  +
Sbjct: 302 LNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRM 361

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
             +++VF    KK  V WNA ++G   +G  + A+ LF QM    ++P+  T   LL A 
Sbjct: 362 DRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCAC 421

Query: 425 AILADLQQAM----NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
                +++      ++ C    +     +E    ++D+  + G L+ AH++   +P+ + 
Sbjct: 422 THAGLVEEGRRYFNSMECV---FTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPM-EA 477

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP---NEVTFTSALHACSH 529
           + +VW  ++ G  +H   +    + K+++   ++P         S ++A SH
Sbjct: 478 NAIVWGALLGGCRLHRDTQLVEVVLKKLI--ALEPWHSGNYVLLSNIYAASH 527


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 194/565 (34%), Positives = 302/565 (53%), Gaps = 2/565 (0%)

Query: 98  FLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYM 157
           FL  +   + +   ++Y  + +AC  L     G  +H R+  T  +    + NCL+ MY 
Sbjct: 74  FLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYC 133

Query: 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVS 217
           + G     +KVFD M   ++VSW  +IS Y KN   ++A+ +F  M  SG+ P+ A  +S
Sbjct: 134 DCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMS 193

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           +L +C     +E+G+ +H  V   +L  NI    A+ +MYV+CG +  A+LVFD M  ++
Sbjct: 194 LLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQN 253

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
            VTWT ++ GY     +  AL LF  M  EGV  +      +L  C  L     G+ +H+
Sbjct: 254 AVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQIHS 313

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
             +K   E EV V T L+D Y KC  ++ +++ F R S+   V W+A+++G   +G    
Sbjct: 314 HIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLED 373

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
            +++F  +  E V  N     S+  A A  A+L      H   I+ G +S +   + ++ 
Sbjct: 374 CIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVT 433

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
           +YSKCG L+ A + F    I + D V W+ II+GY  HG+   A+  F+ M   GV+PN 
Sbjct: 434 MYSKCGRLDYARRAFE--SIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNA 491

Query: 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIR 577
           VTF + L ACSH GL+ E       M  ++      DHY C++D   RAG L EA +LI 
Sbjct: 492 VTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLXEALELIN 551

Query: 578 TMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKD 637
            MP +P    W +LLG C  H +++LG++AA+ LF L+P +   Y+LL  LYSA  +W++
Sbjct: 552 RMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEE 611

Query: 638 AENVRDVMDEKGLRKAPAHSLIEVR 662
           A +VR +M E+ L+K  + S I V+
Sbjct: 612 AGHVRKLMAERELKKEVSCSWISVK 636



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 123/412 (29%), Positives = 199/412 (48%), Gaps = 4/412 (0%)

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           K    KEA      M  + V     S   +  ACG L+ +  GR+IH+ +       + +
Sbjct: 64  KQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGS 123

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             N L+ MY  CGS  + + VFD M  +++V+W  +I+ YA NG++  A+ LF  MQ  G
Sbjct: 124 IENCLLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASG 183

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           +RPNS    SLL +C    +L+ G+ +H+  I+  L   + VETA+ +MY +C  ++ + 
Sbjct: 184 IRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAK 243

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
            VF     +  V W  ++ G         A+ELF +M +E VE ++   + +L     L 
Sbjct: 244 LVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLE 303

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
           D      IH ++++ G  S V V T L+D Y KCG +ESA++ F    I + + V WS +
Sbjct: 304 DWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGR--ISEPNDVSWSAL 361

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           I+G+   G  E  + +F  +   GV  N   +TS   AC+    L+ G       ++   
Sbjct: 362 ISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIK-RG 420

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             S     + +V +  + GRLD A     ++  +P    W A++     HGN
Sbjct: 421 LVSYLYGESAMVTMYSKCGRLDYARRAFESID-EPDAVAWTAIISGYAYHGN 471



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 127/451 (28%), Positives = 228/451 (50%), Gaps = 6/451 (1%)

Query: 49  LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           + + L+R Y   G   +V+ +FDEM  ++   +  V+  YA+NG    ++++F  M   G
Sbjct: 124 IENCLLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASG 183

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
              P++  Y  ++++C   ++ +LG  +H  V+    + +  V   +  MY+  G ++ A
Sbjct: 184 -IRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGA 242

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           + VFD M   + V+W  L+ GY +    + AL +F  M   GVE D      VL  C  L
Sbjct: 243 KLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXL 302

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           ++ +MG+ IH  +        ++    LVD YVKCG +  A   F R+SE + V+W+++I
Sbjct: 303 EDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALI 362

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           +G++ +G + + + +F  ++ EGV  NS    S+  AC++   L  G   H   IK+ L 
Sbjct: 363 SGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLV 422

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
             +  E+A++ MY+KC  +  + + F    +   V W AI++G  ++G A +A+  FR+M
Sbjct: 423 SYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRM 482

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGS 464
               V PN  T  ++L A +    + +A      + R YG    ++    +ID YS+ G 
Sbjct: 483 QSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGL 542

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           L  A ++ + +P  + D + W  ++ G   H
Sbjct: 543 LXEALELINRMPF-EPDAMSWKSLLGGCWAH 572


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 188/533 (35%), Positives = 290/533 (54%), Gaps = 70/533 (13%)

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           VF +ML  G+ PD   + +V+  C  L  ++ G+ +H       LG +    ++L+ MYV
Sbjct: 61  VFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYV 120

Query: 259 KCGSVNEARLVFDRMSERDVVT-----------------------------------WTS 283
           +   + +AR VFD++ +  VVT                                   W  
Sbjct: 121 QFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNG 180

Query: 284 MINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN 343
           MI+G+  +G   +A+ +FQ M  EG++P+  ++ S+L A   L     G  +H + IKQ 
Sbjct: 181 MISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQG 240

Query: 344 LECEVIVETALIDMYAKC-------------------------------NLVKLSFQVFA 372
           L  +  V +ALIDMY KC                                LV  + +VF 
Sbjct: 241 LGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFK 300

Query: 373 RTSKK--KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           +        V W +++A C  NG   +A+ELFR+M +E V+PN  T+  LLPA   +A L
Sbjct: 301 QFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAAL 360

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
                 HC+ +R G  + V V + LID+Y+KCG + ++   F  +P  ++++V W+ ++A
Sbjct: 361 LHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMP--NRNLVSWNSLMA 418

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           GY MHG    A+++F+ M + G +P+ V+FT  L AC+ GGL +EG   F+ M  NH   
Sbjct: 419 GYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVE 478

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
           +R +HY+C+V LLGR+GRL+EAY +I+ MP +P   VWGALL +C +H  V+LGE+AAK 
Sbjct: 479 ARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKR 538

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +FELEP NPGNY+LLS +Y++   W + + VRD+M  +GL+K P +S IE++N
Sbjct: 539 VFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKN 591



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 154/554 (27%), Positives = 251/554 (45%), Gaps = 85/554 (15%)

Query: 27  KSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYA 86
           +S  G++ L  F   S  L +  ++SL +A+ H+    I   E            +++++
Sbjct: 2   ESCHGSEALPLFENFSHCLCSATKASLSQAHAHILKTGISLPE-----------TIQIFS 50

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           +       +++F  ML  G   PD+   P VIK C  L+  + G  +H   L++G  +D+
Sbjct: 51  KLNHFGHVIRVFSYMLTQG-IVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDS 109

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSV----------------------------- 177
            V + L+ MY+ F  +K AR VFD + +  V                             
Sbjct: 110 VVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDL 169

Query: 178 ------VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
                 VSWN +ISG+ ++    +A+++F  M   G++PD  SV SVLPA G L    MG
Sbjct: 170 GVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMG 229

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD-------------- 277
             IH  V    LG +    +AL+DMY KC   +E   VF+ M E D              
Sbjct: 230 IQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRN 289

Query: 278 -------------------VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
                              VV+WTSMI   + NG    AL LF+ MQ EGV+PNS+TI  
Sbjct: 290 GLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPC 349

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           LL AC ++  L  G++ H ++++  +  +V V +ALIDMYAKC  +  S   F     + 
Sbjct: 350 LLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRN 409

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
            V WN+++AG   +G   +A+ +F  M     +P+  +   +L A       ++      
Sbjct: 410 LVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFD 469

Query: 439 YLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            + R +G  + +E  + ++ +  + G LE A+ +  ++P  + D  VW  +++   +H  
Sbjct: 470 SMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPF-EPDSCVWGALLSSCRVHNR 528

Query: 498 ---GETAVSLFKEM 508
              GE A     E+
Sbjct: 529 VDLGEIAAKRVFEL 542


>gi|297746037|emb|CBI16093.3| unnamed protein product [Vitis vinifera]
          Length = 702

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 208/588 (35%), Positives = 312/588 (53%), Gaps = 72/588 (12%)

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           +LG   H  V+  G   D FV   LI MY   GEV +A +V+D M      + N LIS Y
Sbjct: 130 ELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAY 189

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            +N +  +A  VF  +   G  P+  +  ++L  CG +  I+ G+ +H  V   +     
Sbjct: 190 ARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSET 249

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA---------- 297
           A  NAL+ +Y KCG + EA +VF+ + +R++++WT+ ING+  +GD + A          
Sbjct: 250 AVGNALLTLYSKCGMMEEAEIVFENLGQRNIISWTASINGFYQHGDFKKALKQFSMMRES 309

Query: 298 -------------------LG---------------------LFQLMQFEG-----VRPN 312
                              LG                     L + M  EG     +RPN
Sbjct: 310 GIEPNEFTFSIVLASCGCDLGKWMKQRTSSNRWGGQHLMSIFLLRKMIEEGNKPTSLRPN 369

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
              + S+L AC  L   + G ++H   +K + E +  + +ALI MY+KC  V+ + +VF 
Sbjct: 370 QFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFD 429

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
                  V WN ++AG             F QML +   P+  T++SLLPA   +A+L+ 
Sbjct: 430 WI--PNVVSWNTLIAG-------------FSQMLDQGFCPSSVTISSLLPACTNVANLRH 474

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              IH Y +  G    V V + L+D+Y+KCG +  A  +F  +P  +++ V W+ +I GY
Sbjct: 475 GKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMP--ERNTVTWNSLIFGY 532

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
             HG+   A+ LF +M +S  + + +TFT+ L+ACSH G+++ G  LF  M E ++   R
Sbjct: 533 ANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPR 592

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
            +HY C+VDLLGRAG+L EAYDLI+ MP++P   VWGALLGAC  HGN+EL EVAA+ LF
Sbjct: 593 LEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLF 652

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIE 660
           ELEPE+PG+ +LLS LY+   RW +A  ++ +M ++   K P  S IE
Sbjct: 653 ELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 700



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/519 (24%), Positives = 249/519 (47%), Gaps = 57/519 (10%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           ++ H F++  G      + +SL+  Y   G V +   ++D+M+   +   N ++  YA+N
Sbjct: 133 RRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARN 192

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G    + ++F+ +  +G   P++YTY  ++  C  ++  + G  LH  V+   +  +T V
Sbjct: 193 GFFVQAFQVFMQIGNMGT-RPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAV 251

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           GN L+ +Y   G ++ A  VF+ + + +++SW   I+G++++   K+AL  F  M +SG+
Sbjct: 252 GNALLTLYSKCGMMEEAEIVFENLGQRNIISWTASINGFYQHGDFKKALKQFSMMRESGI 311

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG-----------KNIAAWN------ 251
           EP+  +   VL +CG     ++G+ + +  +  R G           K I   N      
Sbjct: 312 EPNEFTFSIVLASCG----CDLGKWMKQRTSSNRWGGQHLMSIFLLRKMIEEGNKPTSLR 367

Query: 252 ----ALVDMYVKCGSVNEAR-------LVFDRMSERDVVTWTSMINGYALNGDVRNA--- 297
                L  +   CG +++ R       ++     E D    +++I  Y+  G V  A   
Sbjct: 368 PNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRV 427

Query: 298 -------------LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
                        +  F  M  +G  P+S+TI SLL AC+++  L+ G+ +H + +   +
Sbjct: 428 FDWIPNVVSWNTLIAGFSQMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGV 487

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
           E +V V +AL+DMYAKC  +  +  +F    ++ TV WN+++ G  ++G   +A+ELF Q
Sbjct: 488 EKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQ 547

Query: 405 MLVEVVEPNDATLNSLLPA--YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
           M     + +  T  ++L A  +A + +L +++       +Y     +E    ++D+  + 
Sbjct: 548 MEESDTKLDHLTFTAVLNACSHAGMVELGESL-FRKMQEKYRIEPRLEHYACMVDLLGRA 606

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           G L  A+ +   +P+ + D  VW  ++     HG+ E A
Sbjct: 607 GKLSEAYDLIKAMPV-EPDKFVWGALLGACRNHGNIELA 644



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 195/447 (43%), Gaps = 78/447 (17%)

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           P    V S L  CG    +E+GR  H  V    LG +     +L+DMY KCG V+ A  V
Sbjct: 111 PHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRV 170

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           +D+M+  D  T   +I+ YA NG    A  +F  +   G RPN  T  ++L+ C ++  +
Sbjct: 171 YDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAI 230

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           + G+ LHA  +K     E  V  AL+ +Y+KC +++ +  VF    ++  + W A + G 
Sbjct: 231 QEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFENLGQRNIISWTASINGF 290

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLN------------------------------- 418
             +G  +KA++ F  M    +EPN+ T +                               
Sbjct: 291 YQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCDLGKWMKQRTSSNRWGGQHLMSI 350

Query: 419 --------------SLLPAYAIL----------ADLQQAMNIHCYLIRYGFLSVVEVSTG 454
                         SL P   +L          +D +   N+H  +++  F S   + + 
Sbjct: 351 FLLRKMIEEGNKPTSLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISA 410

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           LI +YSKCG +E A ++F  IP    ++V W+ +IAG             F +M+  G  
Sbjct: 411 LIYMYSKCGHVEKACRVFDWIP----NVVSWNTLIAG-------------FSQMLDQGFC 453

Query: 515 PNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEA 572
           P+ VT +S L AC++   L  G ++  + +         D Y  + +VD+  + G + EA
Sbjct: 454 PSSVTISSLLPACTNVANLRHGKEIHGYAM---VIGVEKDVYVRSALVDMYAKCGYISEA 510

Query: 573 YDLIRTMPLKPTHAVWGALLGACVIHG 599
             L   MP + T   W +L+     HG
Sbjct: 511 KILFYMMPERNT-VTWNSLIFGYANHG 536



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 188/394 (47%), Gaps = 34/394 (8%)

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           P C    S+LP C     +++ + I+ +++     K   +   +V  +V    +N A ++
Sbjct: 13  PTC----SLLPGC---IAVDLQKNINPIISASGPYKGCMSKGNVVGGWV---DLNNACIL 62

Query: 270 FDRMSERDVVTWT-SMINGYALNGD--VRNALGLFQL-----MQFEGVRPNSLTIGSLLS 321
           F++  +R  V+ T S  +G   + +  V+ A G F       ++F G  P+   + S LS
Sbjct: 63  FEKTPKRIGVSITESHRSGCTDDPEEGVKEA-GFFTRNETPHVEFGGGFPHRQYVFSALS 121

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
            C     ++ GR  H + +K  L  +  V T+LIDMYAKC  V  + +V+ + +      
Sbjct: 122 FCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAAT 181

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
            N +++    NG   +A ++F Q+      PN  T +++L     ++ +Q+   +H +++
Sbjct: 182 CNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVV 241

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           +  +LS   V   L+ +YSKCG +E A  +F    +  ++I+ W+  I G+  HG  + A
Sbjct: 242 KMQYLSETAVGNALLTLYSKCGMMEEAEIVFEN--LGQRNIISWTASINGFYQHGDFKKA 299

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561
           +  F  M +SG++PNE TF+  L +C        G DL  +M +   +      +   + 
Sbjct: 300 LKQFSMMRESGIEPNEFTFSIVLASC--------GCDLGKWMKQRTSSNRWGGQHLMSIF 351

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           LL +   ++E     +   L+P   V  ++L AC
Sbjct: 352 LLRKM--IEEGN---KPTSLRPNQFVLPSILKAC 380



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 158/340 (46%), Gaps = 35/340 (10%)

Query: 18  KLVQQYAATKSIAGTKQLHAFI----ITSGPLFTHLRS------SLVRAYGHVSNVR--- 64
           K ++Q  ++    G   +  F+    I  G   T LR       S+++A GH+S+ R   
Sbjct: 331 KWMKQRTSSNRWGGQHLMSIFLLRKMIEEGNKPTSLRPNQFVLPSILKACGHLSDRRTGE 390

Query: 65  ----ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN------------ 108
               ++     E  +++ + ++ MY++ G    + ++F  +  +  +N            
Sbjct: 391 NMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIPNVVSWNTLIAGFSQMLDQ 450

Query: 109 ---PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
              P + T   ++ ACT++A  + G  +HG  ++ G + D +V + L+ MY   G +  A
Sbjct: 451 GFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEA 510

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           + +F  M E + V+WN+LI GY  + Y  EA+ +F+ M +S  + D  +  +VL AC + 
Sbjct: 511 KILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHA 570

Query: 226 KEIEMGR-MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTS 283
             +E+G  +  ++    R+   +  +  +VD+  + G ++EA  +   M  E D   W +
Sbjct: 571 GMVELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGA 630

Query: 284 MINGYALNGDVRNA-LGLFQLMQFEGVRPNSLTIGSLLSA 322
           ++     +G++  A +    L + E   P S  + S L A
Sbjct: 631 LLGACRNHGNIELAEVAAEHLFELEPESPGSSLLLSNLYA 670


>gi|225439799|ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 193/581 (33%), Positives = 315/581 (54%), Gaps = 38/581 (6%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           +I+ C+D    +    LH R++++    D F+ + LI  Y     +  A KVFD + + +
Sbjct: 40  LIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKLITFYSKSNHLYEAHKVFDKILDKN 99

Query: 177 VVSWNTLISGYF---KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL-KEIEMGR 232
           + SWN ++ GY     + +    L          ++PD  ++  VL A   L  +  + +
Sbjct: 100 IFSWNAMLIGYSIHNMHVHTLNLLSSLLPSYSLTLKPDNFTITCVLKALSVLFPDSILAK 159

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            +   V       +I   NAL+  Y +C     AR++FDRM +RD+V+W SMI GY+  G
Sbjct: 160 EVQCFVLRHGFDSDIFVVNALITYYSRCDEYGIARILFDRMHDRDIVSWNSMIAGYSQGG 219

Query: 293 DVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
              +   L+ +++   G+RPN +T+ S+L AC+    L  G  +H + I++ +E +V   
Sbjct: 220 FYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTNDLVFGMKVHQFIIERKVEMDVSAH 279

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM------ 405
            +LI +YAKC  +  + ++F   S K  V + +I++G + +G   KA++LFR+M      
Sbjct: 280 NSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFREMKNPRLS 339

Query: 406 -----------------LVEVVE--------PNDATLNSLLPAYAILADLQQAMNIHCYL 440
                            ++E+V+        PN  TL+S+LP ++  ++L+    IH Y 
Sbjct: 340 TWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAVTLSSILPTFSCFSNLKGGKAIHAYA 399

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           IR G+   + V+T +ID Y+K G L  A  +F +   KD+ ++VW+ II+ Y  HG    
Sbjct: 400 IRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQS--KDRSLIVWTAIISAYSAHGDANA 457

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560
           A+ LF +M+ +G QP+ VTFT+ L AC+H G+++E   +F+ M   +      +HY C+V
Sbjct: 458 ALRLFGDMLSNGTQPDPVTFTAVLAACAHSGMVNEAWKIFDEMFLKYGFQPCVEHYACMV 517

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620
            +L RAG L EA + I  MP++P   VWGALL    + G+VELG+     LF +EPEN G
Sbjct: 518 GVLSRAGMLSEAAEFICKMPIEPNAKVWGALLNGVSVSGDVELGKFVCDHLFNMEPENTG 577

Query: 621 NYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           NYV+++ LYS   RW++AEN+R+ M + GL+K P  S IE 
Sbjct: 578 NYVIMANLYSQAGRWEEAENIREKMKKIGLKKIPGTSWIET 618



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 174/625 (27%), Positives = 289/625 (46%), Gaps = 85/625 (13%)

Query: 2   NGPSHHTLPKTTHL-------VIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSL 53
           NG  HH L     +         +L+Q  +  + +   KQLHA I+ S     + L S L
Sbjct: 16  NGGIHHCLQNLCSVNGLDYGAFGRLIQHCSDHRLLRQAKQLHARIVLSSLTPDNFLASKL 75

Query: 54  VRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYA-QNGASHD-SLKMFLGMLRLGEYN 108
           +  Y    H+     +FD++ +++ F +N ++  Y+  N   H  +L   L         
Sbjct: 76  ITFYSKSNHLYEAHKVFDKILDKNIFSWNAMLIGYSIHNMHVHTLNLLSSLLPSYSLTLK 135

Query: 109 PDNYTYPIVIKACTDLAWRK-LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
           PDN+T   V+KA + L     L   +   VL  GFD D FV N LI  Y    E   AR 
Sbjct: 136 PDNFTITCVLKALSVLFPDSILAKEVQCFVLRHGFDSDIFVVNALITYYSRCDEYGIARI 195

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLK 226
           +FD M +  +VSWN++I+GY +  + ++   ++  ML S G+ P+  +VVSVL AC    
Sbjct: 196 LFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKMLDSTGLRPNGVTVVSVLQACAQTN 255

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
           ++  G  +H+ +   ++  +++A N+L+ +Y KCGS++ AR +F+ MS +D VT+ S+++
Sbjct: 256 DLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYARELFNEMSNKDEVTYGSIVS 315

Query: 287 GYALNGDVRNALGLF-------------------------------QLMQFEGVRPNSLT 315
           GY  +G V  A+ LF                               Q MQ  G RPN++T
Sbjct: 316 GYMTHGFVDKAMDLFREMKNPRLSTWNAVISGLVQNNCNEGILELVQEMQEFGFRPNAVT 375

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
           + S+L   S    LK G+++HA+ I+      + V T++ID YAK   ++ +  VF ++ 
Sbjct: 376 LSSILPTFSCFSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQWVFDQSK 435

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
            +  + W AI++    +G A  A+ LF  ML    +P+  T  ++L A A    + +A  
Sbjct: 436 DRSLIVWTAIISAYSAHGDANAALRLFGDMLSNGTQPDPVTFTAVLAACAHSGMVNEAWK 495

Query: 436 IHCYL-IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
           I   + ++YGF   VE    ++ + S+ G L  A +   ++PI + +  VW  ++ G  +
Sbjct: 496 IFDEMFLKYGFQPCVEHYACMVGVLSRAGMLSEAAEFICKMPI-EPNAKVWGALLNGVSV 554

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
            G  E                           C H         LFN   EN        
Sbjct: 555 SGDVELGK----------------------FVCDH---------LFNMEPEN------TG 577

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTM 579
           +Y  + +L  +AGR +EA ++   M
Sbjct: 578 NYVIMANLYSQAGRWEEAENIREKM 602


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 202/658 (30%), Positives = 334/658 (50%), Gaps = 8/658 (1%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNVRI--- 65
           P  T L + L++     + +A   Q+HA  + +G  +     S+LV  YG   ++     
Sbjct: 134 PDRTTLAV-LLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALR 192

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
            F  M ER+S  +   +    QN      L++F+ M RLG        Y  V ++C  + 
Sbjct: 193 FFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLG-LGVSQPAYASVFRSCAAIT 251

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
                  LH   +   F  D  VG  ++ +Y     +  AR+ F ++  H+V + N ++ 
Sbjct: 252 CLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMV 311

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           G  +     EAL +F +M +SG+  D  S+  V  AC  +K    G  +H L        
Sbjct: 312 GLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDV 371

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           ++   NA++D+Y KC ++ EA LVF  M +RD V+W ++I     N    + +     M 
Sbjct: 372 DVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEML 431

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
             G+ P+  T GS+L AC+ L  L+ G  +H   IK  L  +  V + ++DMY KC ++ 
Sbjct: 432 RYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMIT 491

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + ++  R   ++ V WN+I++G   N  + +A + F +ML   V+P+  T  ++L   A
Sbjct: 492 EAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCA 551

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            LA ++    IH  +I+   L    +S+ L+D+Y+KCG++  +  +F +   +  D V W
Sbjct: 552 NLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEK--AQKLDFVSW 609

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I GY +HG G  A+ +F+ M Q+ V PN  TF + L ACSH GLLD+G   F  M  
Sbjct: 610 NAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTS 669

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
            ++   + +H+ C+VD+LGR+    EA   IR+MPL+    +W  LL  C I  +VE+ E
Sbjct: 670 RYKLEPQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAE 729

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            AA  +  L+P++   Y+LLS +Y+   +W D    R +M +  L+K P  S IEV++
Sbjct: 730 TAASNVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQS 787



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 148/555 (26%), Positives = 260/555 (46%), Gaps = 12/555 (2%)

Query: 51  SSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++++ AY H  +      LF  M +     +N ++  Y Q G   DS+ + + M R G  
Sbjct: 74  NTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRG-V 132

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PD  T  +++KAC  L    LG+ +H   + TG +MD   G+ L+ MY     ++ A +
Sbjct: 133 APDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALR 192

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
            F  M E + VSW   I+G  +N      L +F  M + G+     +  SV  +C  +  
Sbjct: 193 FFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITC 252

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +   R +H      +   +     A+VD+Y K  S+ +AR  F  +    V    +M+ G
Sbjct: 253 LSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVG 312

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
               G    AL LFQ M   G+  + +++  + SAC+ +    +G  +H   IK   + +
Sbjct: 313 LVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVD 372

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           V V  A++D+Y KC  +  ++ VF    ++ +V WNAI+A    N      +    +ML 
Sbjct: 373 VCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLR 432

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
             +EP+D T  S+L A A L  L+    +H   I+ G      VS+ ++D+Y KCG +  
Sbjct: 433 YGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITE 492

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A K+     I  +++V W+ II+G+ ++   E A   F EM+  GV+P+  T+ + L  C
Sbjct: 493 AQKLHDR--IGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTC 550

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           ++   ++ G  +   +++        D Y  + +VD+  + G + ++  L+     K   
Sbjct: 551 ANLATIELGKQIHGQIIKQEML---GDEYISSTLVDMYAKCGNMPDSL-LMFEKAQKLDF 606

Query: 586 AVWGALLGACVIHGN 600
             W A++    +HG 
Sbjct: 607 VSWNAMICGYALHGQ 621



 Score =  222 bits (565), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 146/488 (29%), Positives = 234/488 (47%), Gaps = 56/488 (11%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD------------------- 170
           G A H R+L++GF   TFV NCL+ MY   G    AR VFD                   
Sbjct: 23  GQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTAYAH 82

Query: 171 ------------AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSV 218
                       AM +  VVSWN L+SGY +    ++++ +   M + GV PD  ++  +
Sbjct: 83  AGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVL 142

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
           L ACG L+++ +G  IH +     L  ++ A +ALVDMY KC S+ +A   F  M ER+ 
Sbjct: 143 LKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNS 202

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           V+W + I G   N      L LF  MQ  G+  +     S+  +C+++  L   R LHA 
Sbjct: 203 VSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAH 262

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
            IK     + +V TA++D+YAK + +  + + F           NA++ G V  GL  +A
Sbjct: 263 AIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEA 322

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
           ++LF+ M    +  +  +L+ +  A A +    Q + +HC  I+ GF   V V   ++D+
Sbjct: 323 LQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDL 382

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           Y KC +L  A+ +F E  ++ +D V W+ IIA    +   E  ++   EM++ G++P++ 
Sbjct: 383 YGKCKALVEAYLVFQE--MEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDF 440

Query: 519 TFTSALHACS-----------HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           T+ S L AC+           HG  +  GL L  F+             + +VD+  + G
Sbjct: 441 TYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFV------------SSTVVDMYCKCG 488

Query: 568 RLDEAYDL 575
            + EA  L
Sbjct: 489 MITEAQKL 496



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 117/296 (39%), Gaps = 34/296 (11%)

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT--------- 379
           L  G++ HA  +         V   L+ MYA+C     +  VF     + T         
Sbjct: 20  LATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTA 79

Query: 380 ----------------------VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
                                 V WNA+L+G    G+ R +V L  +M    V P+  TL
Sbjct: 80  YAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTL 139

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
             LL A   L DL   + IH   ++ G    V   + L+D+Y KC SLE A + F    +
Sbjct: 140 AVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFH--GM 197

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            +++ V W   IAG   +      + LF +M + G+  ++  + S   +C+    L    
Sbjct: 198 GERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTAR 257

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
            L    ++N  +  R    T IVD+  +A  L +A     ++P     A    ++G
Sbjct: 258 QLHAHAIKNKFSADRVVG-TAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVG 312


>gi|297830768|ref|XP_002883266.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329106|gb|EFH59525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 564

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 190/555 (34%), Positives = 313/555 (56%), Gaps = 10/555 (1%)

Query: 113 TYPIVIKA---CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           ++P+ +KA   C+    +K  + +HG  +  GF  +  + + LI +Y+  G+VK ARK+F
Sbjct: 11  SHPLYLKALKLCSYQNVKKQLLLIHGNSVTNGFGSNLQLNDMLIDLYLKQGDVKHARKLF 70

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           D + +  VVSW  +IS + +  Y ++AL++F  M +  V  +  +  SVL +C  L  ++
Sbjct: 71  DRIPKRDVVSWTAMISRFSRCGYHRDALLLFKQMHRQDVRANQFTYGSVLKSCKDLGCLK 130

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
            G  I   +  G+   N+   +AL+ +Y +CG + +ARL FD M ERD+V+W SMI+GY 
Sbjct: 131 EGMQIQGCLEKGKCAGNLIVRSALLSLYARCGKMEDARLQFDSMKERDLVSWNSMIDGYT 190

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            N  V  +  LFQLM  EG +P+  T GSLL A   +  L+    LH   IK        
Sbjct: 191 TNACVDTSFSLFQLMFAEGKKPDCFTFGSLLRASIVVKCLEPVGQLHGLAIKLGFGRSSA 250

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL-ARKAVELFRQMLVE 408
           +  +L+D Y KC  +  ++++   T+K+  +   A++ G     +    A ++F +M++ 
Sbjct: 251 LIRSLVDAYVKCGSIANAWKLHEDTTKRDLISCTALITGFAQQNICTSDAFDIFNEMILM 310

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV-VEVSTGLIDIYSKCGSLES 467
             + ++  ++S+L     +A +     IH + ++   +   + +   LID+Y+K G +E 
Sbjct: 311 KTKMDEVVVSSMLKICTTIASVTVGRQIHGFALKSSQIRFDIALGNSLIDMYAKSGDIED 370

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A   F E  +K+KD+  W+ +IAGYG HG+ E A+ L+  M   G++PN+VTF S L AC
Sbjct: 371 AVLAFEE--MKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHEGIKPNDVTFLSLLSAC 428

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP--LKPTH 585
           SH G  + G  +FN M+  H   +R +H++CI+D+L R+G L+EAY+LIR+    +  + 
Sbjct: 429 SHTGQTELGWKIFNKMINKHGIKAREEHFSCIIDMLARSGYLEEAYELIRSKDGIISLSS 488

Query: 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645
           + WGA L AC  HGNV+L +VAA  L  +EP+ P NY+ L+ +++A   W  A   R +M
Sbjct: 489 STWGAFLDACRRHGNVQLSKVAASQLLSVEPKKPVNYINLASVHAANGAWDSALKTRQLM 548

Query: 646 DEKG-LRKAPAHSLI 659
            E G   K P +SL+
Sbjct: 549 KESGSCNKTPGYSLV 563



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 136/512 (26%), Positives = 258/512 (50%), Gaps = 19/512 (3%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V + R LFD + +R    +  ++  +++ G   D+L +F  M R  +   + +TY  V
Sbjct: 61  GDVKHARKLFDRIPKRDVVSWTAMISRFSRCGYHRDALLLFKQMHR-QDVRANQFTYGSV 119

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +K+C DL   K G+ + G +       +  V + L+++Y   G+++ AR  FD+M E  +
Sbjct: 120 LKSCKDLGCLKEGMQIQGCLEKGKCAGNLIVRSALLSLYARCGKMEDARLQFDSMKERDL 179

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSWN++I GY  NA    +  +F  M   G +PDC +  S+L A   +K +E    +H L
Sbjct: 180 VSWNSMIDGYTTNACVDTSFSLFQLMFAEGKKPDCFTFGSLLRASIVVKCLEPVGQLHGL 239

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA-LNGDVRN 296
                 G++ A   +LVD YVKCGS+  A  + +  ++RD+++ T++I G+A  N    +
Sbjct: 240 AIKLGFGRSSALIRSLVDAYVKCGSIANAWKLHEDTTKRDLISCTALITGFAQQNICTSD 299

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN-LECEVIVETALI 355
           A  +F  M     + + + + S+L  C+++  +  GR +H + +K + +  ++ +  +LI
Sbjct: 300 AFDIFNEMILMKTKMDEVVVSSMLKICTTIASVTVGRQIHGFALKSSQIRFDIALGNSLI 359

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           DMYAK   ++ +   F    +K    W +++AG   +G   KA++L+ +M  E ++PND 
Sbjct: 360 DMYAKSGDIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHEGIKPNDV 419

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
           T  SLL A +     +    I   +I ++G  +  E  + +ID+ ++ G LE A+++   
Sbjct: 420 TFLSLLSACSHTGQTELGWKIFNKMINKHGIKAREEHFSCIIDMLARSGYLEEAYEL--- 476

Query: 475 IPIKDKDIVV------WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE-VTFTSALHAC 527
             I+ KD ++      W   +     HG+ + +     +++   V+P + V + +     
Sbjct: 477 --IRSKDGIISLSSSTWGAFLDACRRHGNVQLSKVAASQLLS--VEPKKPVNYINLASVH 532

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
           +  G  D  L     M E+  +C++   Y+ +
Sbjct: 533 AANGAWDSALKTRQLMKES-GSCNKTPGYSLV 563


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 217/649 (33%), Positives = 349/649 (53%), Gaps = 26/649 (4%)

Query: 33  KQLHAFIITSGPLFTH---LRSSLVRAYGHVSNV---RILFDEM--SERSSFLYNTVMKM 84
           + L   ++ +G L      + +SL+  Y   S V   R +FD M    R    +  +   
Sbjct: 67  RALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASC 126

Query: 85  YAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC-TDLAWRKLGIALHGRVLITGF- 142
            ++NGA  ++L++F   L  G   P+ +T     +AC     +   G A+ G V   GF 
Sbjct: 127 LSRNGAEAEALRLFGETLEEGLL-PNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFW 185

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
             D  VG  LI M+   G++ A R+VFD ++E +VV W  LI+ Y ++ Y+ EA+ +F  
Sbjct: 186 GTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLD 245

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC-- 260
           ML++G +PD  ++ S+L AC  L    +G+ +H L     L  +      LVDMY K   
Sbjct: 246 MLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHN 305

Query: 261 -GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN-ALGLFQLMQFEGVRPNSLTIGS 318
             S++ AR VF+RM + +V+ WT++++GY   G   N  + LF  M  EG+RPN +T  S
Sbjct: 306 GQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSS 365

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           +L AC++L     GR +H   +K NL    +V  AL+ MYA+   ++ +   F +  +K 
Sbjct: 366 MLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKN 425

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN--SLLPAYAILADLQQAMNI 436
            V ++  L G   +G +      ++   +E +E   +T    SL+ A A +  L +   +
Sbjct: 426 MVSFSGNLDG---DGRSNT----YQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRL 478

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H   ++ GF S   +   L+ +YS+CG L  A ++F E+   D +++ W+ +I+G   HG
Sbjct: 479 HALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEM--NDHNVISWTSMISGLAKHG 536

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
           +   A+ LF +M+ +GV+PN+VT+ + L ACSH GL+ EG + F  M ++H    R +HY
Sbjct: 537 YAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHY 596

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
            C+VDLLGR+G +++A D I  MP +    VW  LLGAC  H N+++GE+AA  + +LEP
Sbjct: 597 ACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEP 656

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           ++P  YVLLS LY+    W     +R +M +K L K    S + V N +
Sbjct: 657 QDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTI 705


>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
          Length = 807

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 220/734 (29%), Positives = 366/734 (49%), Gaps = 87/734 (11%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAG--TKQLHAFIITSGP---LFTHLRSSLVRAYGHVSNV 63
           L   T L+ +LV+ Y    S++G     L AF     P    +    S+  RA G ++  
Sbjct: 41  LAADTFLLNRLVELY----SLSGLPCHALRAFRALPHPNVYSYNAAISAACRA-GDLAAA 95

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
           R L   M +R++  +NTV+   A++G+  ++L+M+ GML+ G   P N+T   V+ AC  
Sbjct: 96  RDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEG-LAPTNFTLASVLSACGA 154

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
           +A    G   HG  +  G D   FV N L+ MY   G V  A ++FD M   + VS+  +
Sbjct: 155 VAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAM 214

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL--------KEIEMGRMIH 235
           + G  +     +AL +F  M ++G+  D  +V SVL AC           + I++ + IH
Sbjct: 215 MGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIH 274

Query: 236 ELVAGGRLGKN-------------------------------IAAWNALVDMY------- 257
            LV     G +                               I +WN L+  Y       
Sbjct: 275 ALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYE 334

Query: 258 ----------------------------VKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
                                       +K   V  AR +FD++ +  V TW ++++GY 
Sbjct: 335 RAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYG 394

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
                +  + LF+ MQ + V+P+  T+  +LS+CS L   + G+ +H+ +++  L  ++ 
Sbjct: 395 QEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMF 454

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           V + LID+Y+KC  V ++  +F   +++  V WN++++G   + L+ +A +  +QM    
Sbjct: 455 VASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENG 514

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           + P +++  S++   A L+ + Q   +H  +++ G+   V V   LID+Y+K G+++ A 
Sbjct: 515 MFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDAR 574

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
             F+ + +K+  +V W+ +I GY  +G GE AV LF+ M+ +  +P+ VTF + L  CSH
Sbjct: 575 LFFNCMIVKN--LVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSH 632

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
            GL+DE +  FN M  N+      +HYTC++D L RA R  E   +I  MP K    +W 
Sbjct: 633 SGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWE 692

Query: 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
            LL ACV+H N ELGE +AK LF L+P+NP  YVLLS +Y+ + R  DA  VR +M  +G
Sbjct: 693 VLLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRG 752

Query: 650 LRKAPAHSLIEVRN 663
           + K   +S +  ++
Sbjct: 753 VVKGRGYSWVNHKD 766



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 147/354 (41%), Gaps = 45/354 (12%)

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF--------------------- 371
           ++ HA  +   L  +  +   L+++Y+   L   + + F                     
Sbjct: 30  KAAHARVLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAACRA 89

Query: 372 ----------ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
                      R   +  V WN ++A    +G   +A+E+++ ML E + P + TL S+L
Sbjct: 90  GDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVL 149

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            A   +A L      H   ++ G      V  GL+ +Y+KCGS+  A ++F  +P  ++ 
Sbjct: 150 SACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNE- 208

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL-DLF 540
            V ++ ++ G    G  + A+ LF  M ++G++ + V  +S L AC+     D  +    
Sbjct: 209 -VSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAI 267

Query: 541 NFMLENHQTCSR----ADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
                 H    R    +D +    +VDL  +  ++DEA  +  ++    +   W  L+  
Sbjct: 268 QLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLS-SVSIVSWNILITG 326

Query: 595 CVIHGNVELGEVAAKWL-FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
              +G +   E A + L F  E     N V  S + ++  + +D  + R + D+
Sbjct: 327 ---YGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDK 377


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 186/505 (36%), Positives = 291/505 (57%), Gaps = 7/505 (1%)

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV--FDWMLKSGVEPDCASVVSVLPAC 222
           A   F  + + +  S+N +I G    A+ K +L +  +  M   G++P+  +   +  AC
Sbjct: 79  ASVFFSNILDPTEYSFNVMIRG-LSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIAC 137

Query: 223 GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
             L  +E GRM H  V    L ++    ++L+ MY +CG + +AR VFD +S++D+V+W 
Sbjct: 138 SNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWN 197

Query: 283 SMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           SMI+GY+       A+GLF+ M   G +PN +++ S+L AC  L  LK G  +  + ++ 
Sbjct: 198 SMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVEN 257

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
            +     + +ALI MY KC  +  + ++F    KK  V WNA++ G   NG++ +A++LF
Sbjct: 258 KMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLF 317

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
           + M +    P+  TL  +L A A +  L     +  Y    GF   V V T L+D+Y+KC
Sbjct: 318 QDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKC 377

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG--VQPNEVTF 520
           GSL++A ++F  +P  +K+ V W+ +I+    HG  + A++LFK M+  G  V PN++TF
Sbjct: 378 GSLDNAFRVFYGMP--NKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITF 435

Query: 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
              L AC H GL+DEG  LF+ M  +     + +HY+C+VDL  RAG L+EA+D + TMP
Sbjct: 436 VGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMP 495

Query: 581 LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAEN 640
            KP   + GALLGAC    N+++ E   K L ELEP N GNYV+ SKLY+ +RRW D+  
Sbjct: 496 EKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSAR 555

Query: 641 VRDVMDEKGLRKAPAHSLIEVRNIL 665
           +R +M +KG+ K P  S I++ + L
Sbjct: 556 MRMLMKQKGVSKTPGCSWIDINSQL 580



 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 160/498 (32%), Positives = 268/498 (53%), Gaps = 13/498 (2%)

Query: 1   MNGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHV 60
           +  P     P    L  K         SI   KQ+HA ++T+     H  +S +     +
Sbjct: 17  LQKPHSKPNPNRQALSDKFNSLLQQCLSIKQLKQIHAQLLTNS---IHKPNSFLYKIADL 73

Query: 61  SN---VRILFDEMSERSSFLYNTVMK-MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
            +     + F  + + + + +N +++ +      S  +L+ +  M  LG   P+N TYP 
Sbjct: 74  KDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLG-LKPNNLTYPF 132

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           +  AC++L   + G   H  V+  G D D  V + LI MY   G++  ARKVFD + +  
Sbjct: 133 LFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKD 192

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           +VSWN++ISGY K  +A EA+ +F  M+++G +P+  S+VSVL ACG L ++++G  + E
Sbjct: 193 LVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEE 252

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            V   ++  N    +AL+ MY KCG +  AR +FD M ++D VTW +MI GYA NG    
Sbjct: 253 FVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEE 312

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A+ LFQ M+     P+ +T+  +LSAC+S+  L  G+ +  +  ++  + +V V TAL+D
Sbjct: 313 AIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVD 372

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE--VVEPND 414
           MYAKC  +  +F+VF     K  V WNA+++    +G A++A+ LF+ M+ E   V PND
Sbjct: 373 MYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPND 432

Query: 415 ATLNSLLPA--YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
            T   +L A  +A L D  + +  H     +G +  +E  + ++D++S+ G LE A    
Sbjct: 433 ITFVGVLSACVHAGLVDEGRRL-FHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFV 491

Query: 473 SEIPIKDKDIVVWSVIIA 490
             +P K  ++++ +++ A
Sbjct: 492 MTMPEKPDEVILGALLGA 509


>gi|297829948|ref|XP_002882856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328696|gb|EFH59115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 753

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 207/608 (34%), Positives = 324/608 (53%), Gaps = 11/608 (1%)

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
           R LFD M ER+   +N+++  Y Q G    ++++FL   R      D +TY   +  C +
Sbjct: 103 RQLFDRMPERNIISFNSLISGYTQVGFYEQAMELFLEA-RDDNLKLDKFTYAGALGFCGE 161

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
                 G  LHG V++ G     F+ N LI MY   G++  A  +FD   E   VSWN+L
Sbjct: 162 RCDLDFGKLLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCNERDQVSWNSL 221

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY-LKE--IEMGRMIHELVAG 240
           ISGY +   A+E L +   M ++G++    ++ SVL AC   L E  +E G  IH   A 
Sbjct: 222 ISGYVRVGAAEEPLNLLAKMHRAGLKLTTYALGSVLKACCINLNEGLMEKGMAIHCYAAK 281

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN---- 296
             +  +I    AL+DMY K GS+ EA  +F  M  ++VVT+ +MI+G+    D+ +    
Sbjct: 282 LGMEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPAKNVVTYNAMISGFLQMDDITDEASS 341

Query: 297 -ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            A  LF  MQ  G+ P+  T   +L ACS+   L+ GR +HA   K N + +  + +ALI
Sbjct: 342 EAFKLFMEMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALI 401

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           ++YA     +   Q FA TSK+    W +I+   V N     A +LFRQ+    + P + 
Sbjct: 402 ELYALMGSTEDGMQCFASTSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFSSPIRPEEY 461

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           T++ ++ A A  A L     I  Y I+ G  +   V T  I +Y+K G++  A+K+F  I
Sbjct: 462 TVSLMMSACADFAALSSGEQIQGYAIKSGIDAYTSVKTSSISMYAKSGNMPLANKVF--I 519

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
            +++ D+  +S +I+    HG    A+++F+ M   G++PN+  F   L AC HGGL+  
Sbjct: 520 EVQNPDVATYSAMISSLAQHGSAHDALNIFESMKTRGIKPNQQAFLGVLIACCHGGLVTH 579

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           G++ F  M  ++       H+TC+ DLLGR GRL +A +LI +   +    +W ALL +C
Sbjct: 580 GVNYFQTMKNSYGINPNEKHFTCLADLLGRTGRLSDAENLILSSGFQDHPVMWRALLSSC 639

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
            ++ +  +G+  A+ L ELEPE  G+YVLL  +Y+       AE VR++M ++G++K PA
Sbjct: 640 RVYKDSVIGKRVAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRDRGVKKEPA 699

Query: 656 HSLIEVRN 663
            S I + N
Sbjct: 700 LSWIVLGN 707


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 185/501 (36%), Positives = 290/501 (57%), Gaps = 7/501 (1%)

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVV--FDWMLKSGVEPDCASVVSVLPACGYLK 226
           F  + + +  S+N +I G    A+ K +L +  +  M   G++P+  +   +  AC  L 
Sbjct: 83  FSNILDPTEYSFNVMIRG-LSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLL 141

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
            +E GRM H  V    L ++    ++L+ MY +CG + +AR VFD +S++D+V+W SMI+
Sbjct: 142 AVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMIS 201

Query: 287 GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346
           GY+       A+GLF+ M   G +PN +++ S+L AC  L  LK G  +  + ++  +  
Sbjct: 202 GYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTL 261

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
              + +ALI MY KC  +  + ++F    KK  V WNA++ G   NG++ +A++LF+ M 
Sbjct: 262 NYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMR 321

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
           +    P+  TL  +L A A +  L     +  Y    GF   V V T L+D+Y+KCGSL+
Sbjct: 322 MSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLD 381

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG--VQPNEVTFTSAL 524
           +A ++F  +P K++  V W+ +I+    HG  + A++LFK M+  G  V PN++TF   L
Sbjct: 382 NAFRVFYGMPKKNE--VSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVL 439

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            AC H GL+DEG  LF+ M  +     + +HY+C+VDL  RAG L+EA+D + TMP KP 
Sbjct: 440 SACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPD 499

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
             + GALLGAC    N+++ E   K L ELEP N GNYV+ SKLY+ +RRW D+  +R +
Sbjct: 500 EVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRML 559

Query: 645 MDEKGLRKAPAHSLIEVRNIL 665
           M +KG+ K P  S I++ + L
Sbjct: 560 MKQKGVSKTPGCSWIDINSQL 580



 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 161/498 (32%), Positives = 269/498 (54%), Gaps = 13/498 (2%)

Query: 1   MNGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHV 60
           +  P     P    L  K         SI   KQ+HA ++T+     H  +S +     +
Sbjct: 17  LQKPHSKPNPNRQALSDKFNSLLQQCLSIKQLKQIHAQLLTNS---IHKPNSFLYKIADL 73

Query: 61  SN---VRILFDEMSERSSFLYNTVMKMYAQN-GASHDSLKMFLGMLRLGEYNPDNYTYPI 116
            +     + F  + + + + +N +++  +     S  +L+ +  M  LG   P+N TYP 
Sbjct: 74  KDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLG-LKPNNLTYPF 132

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           +  AC++L   + G   H  V+  G D D  V + LI MY   G++  ARKVFD + +  
Sbjct: 133 LFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKD 192

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           +VSWN++ISGY K  +A EA+ +F  M+++G +P+  S+VSVL ACG L ++++G  + E
Sbjct: 193 LVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEE 252

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            V   ++  N    +AL+ MY KCG +  AR +FD M ++D VTW +MI GYA NG    
Sbjct: 253 FVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEE 312

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A+ LFQ M+     P+ +T+  +LSAC+S+  L  G+ +  +  ++  + +V V TAL+D
Sbjct: 313 AIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVD 372

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE--VVEPND 414
           MYAKC  +  +F+VF    KK  V WNA+++    +G A++A+ LF+ M+ E   V PND
Sbjct: 373 MYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPND 432

Query: 415 ATLNSLLPA--YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
            T   +L A  +A L D  + +  H     +G +  +E  + ++D++S+ G LE A    
Sbjct: 433 ITFVGVLSACVHAGLVDEGRRL-FHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFV 491

Query: 473 SEIPIKDKDIVVWSVIIA 490
             +P K  ++++ +++ A
Sbjct: 492 MTMPEKPDEVILGALLGA 509


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  351 bits (900), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 189/588 (32%), Positives = 322/588 (54%), Gaps = 4/588 (0%)

Query: 77   LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGR 136
            ++N  +  + Q G + +++  F+ M+       D  T+ +++     L   +LG  +HG 
Sbjct: 902  VWNKALSRFLQRGEAWEAVDCFVDMIN-SRVACDGLTFVVMLTVVAGLNCLELGKQIHGI 960

Query: 137  VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEA 196
            V+ +G D    VGNCLI MY+  G V  AR VF  M E  ++SWNT+ISG   +   + +
Sbjct: 961  VMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECS 1020

Query: 197  LVVFDWMLKSGVEPDCASVVSVLPACGYLKE-IEMGRMIHELVAGGRLGKNIAAWNALVD 255
            + +F  +L+  + PD  +V SVL AC  L+    +   IH       +  +     AL+D
Sbjct: 1021 VGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALID 1080

Query: 256  MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
            +Y K G + EA  +F      D+ +W ++++GY ++GD   AL L+ LMQ  G R + +T
Sbjct: 1081 VYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQIT 1140

Query: 316  IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
            + +   A   L  LK+G+ +HA  +K+    ++ V + ++DMY KC  ++ + +VF+   
Sbjct: 1141 LVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIP 1200

Query: 376  KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
                V W  +++GCV NG    A+  + QM +  V+P++ T  +L+ A ++L  L+Q   
Sbjct: 1201 SPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQ 1260

Query: 436  IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
            IH  +++        V T L+D+Y+KCG++E A  +F       + I  W+ +I G   H
Sbjct: 1261 IHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRT--NTRRIASWNAMIVGLAQH 1318

Query: 496  GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
            G+ + A+  FK M   GV P+ VTF   L ACSH GL+ E  + F  M +N+      +H
Sbjct: 1319 GNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEH 1378

Query: 556  YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
            Y+C+VD L RAGR++EA  +I +MP + + +++  LL AC +  + E G+  A+ L  LE
Sbjct: 1379 YSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALE 1438

Query: 616  PENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            P +   YVLLS +Y+A  +W++  + R++M +  ++K P  S ++++N
Sbjct: 1439 PSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKN 1486



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 175/604 (28%), Positives = 300/604 (49%), Gaps = 53/604 (8%)

Query: 12   TTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAY---GHVSNVRILF 67
            T H +  + +    + S + ++ LH + +  G  +   +  +LV  Y   G +   R+LF
Sbjct: 759  TRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLF 818

Query: 68   DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
            D M+ R   L+N +MK Y      ++++ +F    R G + PD            D+  R
Sbjct: 819  DGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTG-FRPD------------DVTLR 865

Query: 128  KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA-ARKVFDAMWEHS---VVSWNTL 183
             L   +  +  I                 +   + KA A K+F  M++     V+ WN  
Sbjct: 866  TLSRVVKCKKNI-----------------LELKQFKAYATKLF--MYDDDGSDVIVWNKA 906

Query: 184  ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243
            +S + +   A EA+  F  M+ S V  D  + V +L     L  +E+G+ IH +V    L
Sbjct: 907  LSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGL 966

Query: 244  GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
             + ++  N L++MYVK GSV+ AR VF +M+E D+++W +MI+G  L+G    ++G+F  
Sbjct: 967  DQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVH 1026

Query: 304  MQFEGVRPNSLTIGSLLSACSSL---YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
            +  + + P+  T+ S+L ACSSL   YYL     +HA  +K  +  +  V TALID+Y+K
Sbjct: 1027 LLRDSLLPDQFTVASVLRACSSLEGGYYL--ATQIHACAMKAGVVLDSFVSTALIDVYSK 1084

Query: 361  CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
               ++ +  +F          WNAI+ G + +G   KA+ L+  M       +  TL + 
Sbjct: 1085 RGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNA 1144

Query: 421  LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
              A   L  L+Q   IH  +++ GF   + V++G++D+Y KCG +ESA ++FSEIP  D 
Sbjct: 1145 AKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDD 1204

Query: 481  DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540
              V W+ +I+G   +G  E A+  + +M  S VQP+E TF + + ACS    L++G  + 
Sbjct: 1205 --VAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIH 1262

Query: 541  NFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
              +++    C+  D +  T +VD+  + G +++A  L +    +   A W A++     H
Sbjct: 1263 ANIVK--LNCA-FDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRI-ASWNAMIVGLAQH 1318

Query: 599  GNVE 602
            GN +
Sbjct: 1319 GNAK 1322



 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 137/452 (30%), Positives = 234/452 (51%), Gaps = 7/452 (1%)

Query: 33   KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
            KQ+H  ++ SG      + + L+  Y   G VS  R +F +M+E     +NT++     +
Sbjct: 955  KQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLS 1014

Query: 89   GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL-AWRKLGIALHGRVLITGFDMDTF 147
            G    S+ MF+ +LR     PD +T   V++AC+ L     L   +H   +  G  +D+F
Sbjct: 1015 GLEECSVGMFVHLLR-DSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSF 1073

Query: 148  VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
            V   LI +Y   G+++ A  +F       + SWN ++ GY  +    +AL ++  M +SG
Sbjct: 1074 VSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESG 1133

Query: 208  VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
               D  ++V+   A G L  ++ G+ IH +V       ++   + ++DMY+KCG +  AR
Sbjct: 1134 ERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESAR 1193

Query: 268  LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
             VF  +   D V WT+MI+G   NG   +AL  +  M+   V+P+  T  +L+ ACS L 
Sbjct: 1194 RVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLT 1253

Query: 328  YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
             L++GR +HA  +K N   +  V T+L+DMYAKC  ++ +  +F RT+ ++   WNA++ 
Sbjct: 1254 ALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIV 1313

Query: 388  GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM-NIHCYLIRYGFL 446
            G   +G A++A++ F+ M    V P+  T   +L A +    + +A  N +     YG  
Sbjct: 1314 GLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIE 1373

Query: 447  SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
              +E  + L+D  S+ G +E A K+ S +P +
Sbjct: 1374 PEIEHYSCLVDALSRAGRIEEAEKVISSMPFE 1405


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 197/514 (38%), Positives = 282/514 (54%), Gaps = 4/514 (0%)

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           +++ Y   G + A RK FD M    +VSWN LI+ Y  N       + F  ML  G+ P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFD 271
              +   L AC   +EI +GR I   + G  + +      ALV MY K G   +A  VF 
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 272 RMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKR 331
           RMS RDVV W++M+  YA NG  R ALGLF+ M  +GV PN +T+ S L AC+SL  L+ 
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 180

Query: 332 GRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVH 391
           G  +H     Q ++  V+V TAL+++Y KC  ++ + + F +  +K  V W+AI A    
Sbjct: 181 GALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYAR 240

Query: 392 NGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH--CYLIRYGFLSVV 449
           N   R A+ +  +M +E + PN  T  S+L A A +A L+Q   IH    ++  G  S V
Sbjct: 241 NDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDV 300

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            V T L+++YSKCG+L  A  +F +I     D+V+W+ +IA    HG  E A+ LF+ M 
Sbjct: 301 YVLTALVNMYSKCGNLALAGDMFDKIA--HLDLVLWNSLIATNAQHGQTEKALELFERMR 358

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
             G+QP  +TFTS L ACSH G+LD+G   F   + +H     A+H+ C+VDLLGRAG +
Sbjct: 359 LEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWI 418

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629
            ++ DL+  MP +P    W A LGAC  + N++    AA+ LF+L+P     YVLLS +Y
Sbjct: 419 VDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMY 478

Query: 630 SAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +   RW D   +R  M      K    S IEV++
Sbjct: 479 AKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKD 512



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 132/432 (30%), Positives = 218/432 (50%), Gaps = 7/432 (1%)

Query: 53  LVRAYGHVSN---VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNP 109
           ++ AY  + N   VR  FDEM       +N ++  Y  N         F GML  G  NP
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQG-INP 59

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
                 I + ACTD     +G ++   +L TG + ++ V   L++MY   G    A  VF
Sbjct: 60  GEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVF 119

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
             M    VV+W+ +++ Y +N + +EAL +F  M   GV P+  ++VS L AC  L ++ 
Sbjct: 120 LRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLR 179

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
            G ++H+ V    +   +    ALV++Y KCG +  A   F ++ E++VV W+++   YA
Sbjct: 180 SGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYA 239

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWT--IKQNLECE 347
            N   R+A+ +   M  EG+ PNS T  S+L AC+++  LK+GR +H  T  +   LE +
Sbjct: 240 RNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESD 299

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           V V TAL++MY+KC  + L+  +F + +    V WN+++A    +G   KA+ELF +M +
Sbjct: 300 VYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRL 359

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLE 466
           E ++P   T  S+L A +    L Q        I  +G     E    ++D+  + G + 
Sbjct: 360 EGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIV 419

Query: 467 SAHKIFSEIPIK 478
            +  +   +P +
Sbjct: 420 DSEDLLLHMPFE 431



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 155/290 (53%), Gaps = 6/290 (2%)

Query: 49  LRSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           ++++LV  YG   H ++   +F  MS R    ++ ++  YA+NG   ++L +F  M  L 
Sbjct: 98  VQTALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQM-DLD 156

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
              P+  T    + AC  L   + G  +H RV   G      VG  L+ +Y   G ++AA
Sbjct: 157 GVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAA 216

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
            + F  + E +VV+W+ + + Y +N   ++A+ V   M   G+ P+  + VSVL AC  +
Sbjct: 217 VEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAI 276

Query: 226 KEIEMGRMIHE--LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
             ++ GR IHE   V GG L  ++    ALV+MY KCG++  A  +FD+++  D+V W S
Sbjct: 277 AALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNS 336

Query: 284 MINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
           +I   A +G    AL LF+ M+ EG++P  +T  S+L ACS    L +GR
Sbjct: 337 LIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGR 386


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 195/555 (35%), Positives = 307/555 (55%), Gaps = 14/555 (2%)

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF-DAMWEHS 176
           +++C D      G  LH  ++  GF         LI MY   G++  A  VF D   E +
Sbjct: 18  LQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERN 77

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V ++N +ISG+  N  A +    +  M   GV PD  +   V+  C  + E+   + IH 
Sbjct: 78  VFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEV---KKIHG 134

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            +    L  ++   +ALV+ Y+K GS+ +A+ VF  +S RDVV W +MINGYA  G +  
Sbjct: 135 CLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDE 194

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           AL +F+ M  +GV P+  TI  +LS  +S   L  G+++H   +K   +  V V  ALID
Sbjct: 195 ALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALID 254

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY KC  +  +  +F   ++K    WN+I++     G     + LF +ML   + P+  T
Sbjct: 255 MYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVT 314

Query: 417 LNSLLPAYAILADLQQAMNIHCYLI--------RYGFLSVVEVSTGLIDIYSKCGSLESA 468
           + ++LPA + LA L     IH Y+I          G +  + VS  ++D+Y+KCGS+ +A
Sbjct: 315 ITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNA 374

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            KIF  +    KD+  W+++I GYGMHG+   A+ +F +M ++  +PNEVT    L AC+
Sbjct: 375 LKIFDSM--SKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACN 432

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           H G +  G      M          +HYTC++D+LGRAG L++AY++++ MP++    VW
Sbjct: 433 HAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVW 492

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
            ALLGAC +HGN EL E+AA+ + +LEPE+ G+YVL+S +Y  + R+++   VR  M E+
Sbjct: 493 RALLGACRLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMKEQ 552

Query: 649 GLRKAPAHSLIEVRN 663
            ++K P  S IE+++
Sbjct: 553 NVKKTPGCSWIELKD 567



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 152/517 (29%), Positives = 261/517 (50%), Gaps = 37/517 (7%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSG-----PLFTHLRSSLVRAYGHVSNVRILFDEMS 71
           +  +Q  A  +++   KQLH+ +IT G     P  T L +   +       + + +D   
Sbjct: 15  VAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCH 74

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
           ER+ F YN ++  +  NG +    + F   +RL    PD YT+P V++ C ++   K   
Sbjct: 75  ERNVFAYNAIISGFVSNGLASKGFQ-FYKKMRLEGVMPDKYTFPCVVRTCCEVMEVK--- 130

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +HG +L  G ++D FVG+ L+  Y+  G ++ A+KVF  +    VV WN +I+GY K  
Sbjct: 131 KIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIG 190

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
              EAL VF  M   GV P   ++  +L       +++ G+ +H +V        ++  N
Sbjct: 191 CLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSN 250

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           AL+DMY KC  + +A ++F+ ++E+D+ +W S+I+ +   GD    L LF  M   G+ P
Sbjct: 251 ALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILP 310

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE--------VIVETALIDMYAKCNL 363
           + +TI ++L ACS L  L  GR +H + I   L  +        ++V  A++DMYAKC  
Sbjct: 311 DLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGS 370

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           +  + ++F   SKK    WN ++ G   +G A +A+ +F QM     +PN+ TL  +L A
Sbjct: 371 MNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSA 430

Query: 424 ----------YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
                        LA ++           +G +  +E  T +ID+  + G LE A++I  
Sbjct: 431 CNHAGFVSHGRLFLAQMEST---------FGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQ 481

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           ++PI+  + VVW  ++    +HG+ E A    ++++Q
Sbjct: 482 KMPIQ-ANPVVWRALLGACRLHGNAELAEIAARQVLQ 517


>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
 gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
 gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
          Length = 1027

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 205/658 (31%), Positives = 345/658 (52%), Gaps = 8/658 (1%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILF 67
           T      ++   A  K+    +Q+HA  +  G      + SSL+  Y   G  S+ + +F
Sbjct: 324 TRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVF 383

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           D   E++  ++N ++  + QN    ++++MF  M+R      D +T+  ++ ACT L+  
Sbjct: 384 DLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRY-TLQTDEFTFVSILGACTYLSSF 442

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
            LG  +H   +    D+  FV N  + MY  +G +  A+ +F  +     +SWN L  G 
Sbjct: 443 YLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGL 502

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            +N   +EA+ +   M   G+ PD  S  + + AC  ++  E G+ IH L     +  N 
Sbjct: 503 AQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNH 562

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
           A  ++L+D+Y K G V  +R +F ++    +V   ++I G+  N +   A+ LFQ +  +
Sbjct: 563 AVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKD 622

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN-LECEVIVETALIDMYAKCNLVKL 366
           G++P+S+T  S+LS CS       G+ +H +T+K   L  + ++  +L  +Y K  +++ 
Sbjct: 623 GLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLED 682

Query: 367 SFQVFARTSKKKTV-PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
           + ++       K +  W AI++G   NG    ++  F +M    V  ++AT  S+L A +
Sbjct: 683 ANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACS 742

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            +        IH  + + GF S    ++ LID+YSKCG + S+ + F E+  K +DI+ W
Sbjct: 743 DVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNK-QDIMPW 801

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I G+  +G+ + A+ LF++M +  ++P+EVTF   L AC+H GL+ EG   F  M +
Sbjct: 802 NSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSMRK 861

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
            +    R DHY C +DLLGR G L EA + I  +P +P   VW   L AC +H + E G+
Sbjct: 862 VYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGK 921

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +AA+ L ELEP+    YVLLS L++A   W +A+  R+ M EKG+ K P  S I V N
Sbjct: 922 IAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWITVGN 979



 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 146/548 (26%), Positives = 292/548 (53%), Gaps = 16/548 (2%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           S + + G + +   L  +M   S+  +N V+  +AQ+G   + L ++  M   G + P  
Sbjct: 267 STLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLW-PTR 325

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T+  ++ A  ++     G  +H   ++ G D + FVG+ LI +Y   G    A+ VFD 
Sbjct: 326 STFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDL 385

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
             E ++V WN +++G+ +N   +EA+ +F +M++  ++ D  + VS+L AC YL    +G
Sbjct: 386 SCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLG 445

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           + +H +     +  ++   NA +DMY K G++ +A+ +F  +  +D ++W ++  G A N
Sbjct: 446 KQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQN 505

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
            +   A+ + + M+  G+ P+ ++  + ++ACS++   + G+ +H   IK  +     V 
Sbjct: 506 LEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVG 565

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
           ++LID+Y+K   V+ S ++FA+      VP NA++AG V N    +A++LF+Q+L + ++
Sbjct: 566 SSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLK 625

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL---SVVEVSTGLIDIYSKCGSLESA 468
           P+  T +S+L   +   +      +HCY ++ G L   +++ VS  L  IY K   LE A
Sbjct: 626 PSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVS--LAGIYLKSKMLEDA 683

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
           +K+ +E+P   K++  W+ II+GY  +G+G+ ++  F  M    V+ +E TF S L ACS
Sbjct: 684 NKLLTEMP-DHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACS 742

Query: 529 HGGLLDEGLDLFNFMLE----NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
                 +G ++   + +    +++T + A     ++D+  + G +  +++  + +  K  
Sbjct: 743 DVTAFADGKEIHGLITKSGFGSYETATSA-----LIDMYSKCGDVISSFEAFKELKNKQD 797

Query: 585 HAVWGALL 592
              W +++
Sbjct: 798 IMPWNSMI 805



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 148/566 (26%), Positives = 261/566 (46%), Gaps = 72/566 (12%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           + LH  I+  G PL   L  SLV  Y   G V           ER+S   ++++  +A++
Sbjct: 76  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 135

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF------ 142
           G+  D L  F  +       PD +   +V+ AC+ +     G  +H  V+ +GF      
Sbjct: 136 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 195

Query: 143 -----DM--------------------DTFVGNCLIAMYMNFGEVKAARKVFDAM----- 172
                DM                    DT   + +IA Y   G  + A  +F  M     
Sbjct: 196 EAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGS 255

Query: 173 -------------------WEH-----------SVVSWNTLISGYFKNAYAKEALVVFDW 202
                               +H           S V+WN +ISG+ ++      L ++  
Sbjct: 256 APDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKD 315

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           M   G+ P  ++  S+L A   +K    G+ +H       L  N+   ++L+++Y KCG 
Sbjct: 316 MRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGC 375

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
            ++A+ VFD   E+++V W +M+ G+  N     A+ +FQ M    ++ +  T  S+L A
Sbjct: 376 PSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGA 435

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           C+ L     G+ +H  TIK  ++  + V  A +DMY+K   +  +  +F+    K ++ W
Sbjct: 436 CTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISW 495

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           NA+  G   N    +AV + ++M +  + P+D + ++ + A + +   +    IHC  I+
Sbjct: 496 NALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIK 555

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
           YG  S   V + LID+YSK G +ES+ KIF+++      IV  + +IAG+  + + + A+
Sbjct: 556 YGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDA--SSIVPINALIAGFVQNNNEDEAI 613

Query: 503 SLFKEMVQSGVQPNEVTFTSALHACS 528
            LF+++++ G++P+ VTF+S L  CS
Sbjct: 614 QLFQQVLKDGLKPSSVTFSSILSGCS 639



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 114/273 (41%), Gaps = 45/273 (16%)

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           R+LH   ++        +  +L+++Y K   V  ++       ++ +   +++L+    +
Sbjct: 76  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 135

Query: 393 GLARKAVELFRQMLVEVV-EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEV 451
           G     +  FR +       P+   L  +L A + +  L     +HC +++ GF S V  
Sbjct: 136 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 195

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
              L+D+Y+KCG + +A ++F  I     D + WS +IA Y   G  + A++LF  M + 
Sbjct: 196 EAALVDMYAKCGDVPNARRVFDGIAC--PDTICWSSMIACYHRVGCYQEALALFSRMDKM 253

Query: 512 GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571
           G  P++VT  +                                    I+  L  +GRLD 
Sbjct: 254 GSAPDQVTLVT------------------------------------IISTLASSGRLDH 277

Query: 572 AYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
           A  L++ MP  P+   W A     VI G+ + G
Sbjct: 278 ATALLKKMP-TPSTVAWNA-----VISGHAQSG 304


>gi|302764012|ref|XP_002965427.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
 gi|300166241|gb|EFJ32847.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
          Length = 495

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 188/492 (38%), Positives = 281/492 (57%), Gaps = 2/492 (0%)

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
           TG     FVGN L+ MY   G V+ AR+ F++M   +V+SW+T+++ Y +     +ALV+
Sbjct: 4   TGLCCGEFVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVL 63

Query: 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVK 259
           F  M + GVEP+  + +SVL AC   + +E G MIH L A  +L   +    ALV MY K
Sbjct: 64  FQKMEEEGVEPNEVTFLSVLDACANAEAVEQGEMIHRLAARKKLDVGLIVGTALVGMYGK 123

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
           C  + EAR VFD + E+DVVTW++MI+ YA  G VR A+ LF  M  +GVRPN + + S+
Sbjct: 124 CSRLIEARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSI 183

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           L ACSS   L  G+  H   +      +V     LI MY KC  +  +  VF    ++  
Sbjct: 184 LGACSSAGALAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDL 243

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           + W+A+LA    +G  + A   FR+M +E V+P+  T  SLL A ++L  L +   IH  
Sbjct: 244 ISWSAMLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGNVIHTR 303

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           +   GF SV+ +   LID+Y KCGSL++A  IF    +  ++++ W+ +I     H  G+
Sbjct: 304 IRAEGFQSVMYIENSLIDMYGKCGSLQAARGIFDR--MSHRNVITWTTMITACVQHEQGK 361

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
            A+ LF+EM ++GVQP++V F S +H+CSH GL++EG   F  M+E+       +H+  +
Sbjct: 362 EALELFEEMEKAGVQPDQVAFLSIIHSCSHSGLVEEGRIYFLKMVEDQSFTPGVEHFVGM 421

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENP 619
           +DLLGR+G+L+EA +L+  MP++P    W  LL AC  H + E     A  +  L P + 
Sbjct: 422 LDLLGRSGKLNEAEELMEFMPVEPGVVGWNTLLSACKTHNDTERAGRVAGGMLVLGPGHA 481

Query: 620 GNYVLLSKLYSA 631
           G YV  S + S 
Sbjct: 482 GPYVSFSNILSG 493



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 133/455 (29%), Positives = 233/455 (51%), Gaps = 6/455 (1%)

Query: 51  SSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           +SL+  YG    V   R  F+ M+ R+   ++T++  YAQ G    +L +F  M   G  
Sbjct: 14  NSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEEG-V 72

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            P+  T+  V+ AC +    + G  +H        D+   VG  L+ MY     +  AR+
Sbjct: 73  EPNEVTFLSVLDACANAEAVEQGEMIHRLAARKKLDVGLIVGTALVGMYGKCSRLIEARQ 132

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VFD + E  VV+W+T+IS Y +  + +EA+ +F +M   GV P+   ++S+L AC     
Sbjct: 133 VFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSSAGA 192

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +  G+M HELV     G +++  N L+ MY KCG +  A+ VF  M  RD+++W++M+  
Sbjct: 193 LAEGKMTHELVVICGFGADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSAMLAV 252

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
            A +G  ++A   F+ M  EGV+P+ +T  SLL ACS L  L  G  +H     +  +  
Sbjct: 253 IAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGNVIHTRIRAEGFQSV 312

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           + +E +LIDMY KC  ++ +  +F R S +  + W  ++  CV +   ++A+ELF +M  
Sbjct: 313 MYIENSLIDMYGKCGSLQAARGIFDRMSHRNVITWTTMITACVQHEQGKEALELFEEMEK 372

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLE 466
             V+P+     S++ + +    +++       ++    F   VE   G++D+  + G L 
Sbjct: 373 AGVQPDQVAFLSIIHSCSHSGLVEEGRIYFLKMVEDQSFTPGVEHFVGMLDLLGRSGKLN 432

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
            A ++   +P+ +  +V W+ +++    H   E A
Sbjct: 433 EAEELMEFMPV-EPGVVGWNTLLSACKTHNDTERA 466


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 176/550 (32%), Positives = 303/550 (55%), Gaps = 35/550 (6%)

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
           F  N L++   +   +     +F +M +   VS+N +I+G+        A+ ++  +L++
Sbjct: 73  FTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRA 132

Query: 207 G--VEPDCASVVSVLPACGYLKEIEMGRMIH----------ELVAGGRL----------- 243
           G  V P   ++ +++ A   L +  +GR  H              G  L           
Sbjct: 133 GSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIG 192

Query: 244 ----------GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
                     GKN+  +N ++   ++C  V EAR +F+ M++RD +TWT+M+ G+  NG 
Sbjct: 193 DAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGL 252

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              AL  F+ M+F+G+  +  T GS+L+AC +L  L++G+ +HA+ I+ + +  V V +A
Sbjct: 253 ESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSA 312

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           L+DMY+KC  +K +   F R S K  + W A++ G   NG + +AV +F +M  + ++P+
Sbjct: 313 LVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPD 372

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
           D TL S++ + A LA L++    HC  +  G +  + VS  L+ +Y KCGS+E AH++F 
Sbjct: 373 DFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFD 432

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
           E+   D+  V W+ ++ GY   G  +  + LF++M+   V+P+ VTF   L ACS  G +
Sbjct: 433 EMLFHDQ--VSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFV 490

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
           ++G   F+ M ++H      DHYTC++DL  R+GRL EA + I+ MP+ P    WG LL 
Sbjct: 491 EKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLS 550

Query: 594 ACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKA 653
           AC + G++E+G+ AA+ L E++P+NP +YVLL  +++    W     +R  M ++ ++K 
Sbjct: 551 ACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKE 610

Query: 654 PAHSLIEVRN 663
           P  S I+ +N
Sbjct: 611 PGCSWIKYKN 620



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 152/555 (27%), Positives = 271/555 (48%), Gaps = 43/555 (7%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGP-LFTHLRSSLVRAYGH---VSNVRI 65
           P  THL+  L+  Y      A  +++  F  T  P LFT+  ++L+    H   + ++  
Sbjct: 38  PPPTHLLNHLLTAYGKAGRHARARRV--FDATPHPNLFTY--NALLSTLAHARLLDDMDS 93

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGE-YNPDNYTYPIVIKACTDL 124
           LF  M++R +  YN V+  ++  GA   +++++  +LR G    P   T   ++ A + L
Sbjct: 94  LFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASAL 153

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
             R LG   H ++L  GF ++ FVG+ L+ MY   G +  A++VFD M   +VV +NT+I
Sbjct: 154 GDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMI 213

Query: 185 -------------------------------SGYFKNAYAKEALVVFDWMLKSGVEPDCA 213
                                          +G+ +N    +AL  F  M   G+  D  
Sbjct: 214 TGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQY 273

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           +  S+L ACG L  +E G+ IH  +       N+   +ALVDMY KC S+  A   F RM
Sbjct: 274 TFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRM 333

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
           S +++++WT++I GY  NG    A+ +F  MQ +G+ P+  T+GS++S+C++L  L+ G 
Sbjct: 334 SCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGA 393

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
             H   +   L   + V  AL+ +Y KC  ++ + ++F        V W A++ G    G
Sbjct: 394 QFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFG 453

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN-IHCYLIRYGFLSVVEVS 452
            A++ ++LF +ML + V+P+  T   +L A +    +++  +  H     +G + + +  
Sbjct: 454 RAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHY 513

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
           T +ID+YS+ G L+ A +   ++P+   D + W  +++   + G  E      + +++  
Sbjct: 514 TCMIDLYSRSGRLKEAEEFIKQMPMH-PDAIGWGTLLSACRLRGDMEIGQWAAENLLEID 572

Query: 513 VQ-PNEVTFTSALHA 526
            Q P       ++HA
Sbjct: 573 PQNPASYVLLCSMHA 587



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 205/470 (43%), Gaps = 86/470 (18%)

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           N+  +NAL+        +++   +F  M++RD V++ ++I G++  G    A+ L+  + 
Sbjct: 71  NLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLL 130

Query: 306 FEG--VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK--- 360
             G  VRP+ +T+ +++ A S+L     GR  H   ++        V + L+ MYAK   
Sbjct: 131 RAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGL 190

Query: 361 ----------------------------CNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
                                       C +V+ + ++F   + +  + W  ++ G   N
Sbjct: 191 IGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQN 250

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
           GL  +A+  FR+M  + +  +  T  S+L A   L+ L+Q   IH Y+IR  +   V V 
Sbjct: 251 GLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVG 310

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
           + L+D+YSKC S++ A   F  +    K+I+ W+ +I GYG +G  E AV +F EM + G
Sbjct: 311 SALVDMYSKCRSIKPAETAFRRMSC--KNIISWTALIVGYGQNGCSEEAVRVFSEMQRDG 368

Query: 513 VQPNEVTFTSALHACSHGGLLDEGLD---------------------------------- 538
           + P++ T  S + +C++   L+EG                                    
Sbjct: 369 IDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAH 428

Query: 539 -LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM---PLKPTHAVWGALLGA 594
            LF+ ML + Q       +T +V    + GR  E  DL   M    +KP    +  +L A
Sbjct: 429 RLFDEMLFHDQVS-----WTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSA 483

Query: 595 CVIHGNVELGEVAAKWLFELEPEN-----PGNYVLLSKLYSAVRRWKDAE 639
           C   G VE G     +   ++ ++       +Y  +  LYS   R K+AE
Sbjct: 484 CSRAGFVEKG---CSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAE 530


>gi|357512007|ref|XP_003626292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355501307|gb|AES82510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 650

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 198/549 (36%), Positives = 301/549 (54%), Gaps = 17/549 (3%)

Query: 129 LGIALHGRVLIT--GFDMDT------FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
           LG ++H R++     FD D       F+ N L++MY   GE + A  VFD M     VSW
Sbjct: 52  LGSSIHARIIKQPPSFDFDGSQRNALFIWNSLLSMYSKCGEFRNAGNVFDYMPVRDTVSW 111

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSG---VEPDCASVVSVLPACGYLK---EIEMGRMI 234
           NT+ISG+ +N     +   F  M +S       D A++ ++L  C  L+      + +MI
Sbjct: 112 NTMISGFLRNGDFDTSFKFFKQMTESNRVCCRFDKATLTTMLSGCDGLRLGISTSVTQMI 171

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H LV  G   + I   NAL+  Y KC   ++ R VFD M ER+VVTWT++I+G A N   
Sbjct: 172 HGLVFVGGFEREITVGNALITSYFKCECFSQGRKVFDEMIERNVVTWTAVISGLAQNEFY 231

Query: 295 RNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
            ++L LF  M+  G V PN LT  S L ACS L  L+ G+ +H    K  ++ ++ +E+A
Sbjct: 232 EDSLRLFAQMRCCGSVSPNVLTYLSSLMACSGLQVLRDGQKIHGLLWKLGMQSDLCIESA 291

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           L+D+Y+KC  +  ++Q+F    +   V    IL     NG   +A+++F +M+   +E +
Sbjct: 292 LMDLYSKCGSLDAAWQIFESAEELDGVSLTVILVAFAQNGFEEEAIQIFTKMVALGMEVD 351

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
              ++++L  + +   L     IH  +I+  F     V  GL+++YSKCG L  +  +F 
Sbjct: 352 ANMVSAVLGVFGVGTYLALGKQIHSLIIKKNFCENPFVGNGLVNMYSKCGDLSDSLLVFY 411

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
           ++    K+ V W+ +IA +  HG G  A+  ++EM   GV P +VTF S LHACSH GL+
Sbjct: 412 QM--TQKNSVSWNSVIAAFARHGDGFKALQFYEEMRVEGVAPTDVTFLSLLHACSHAGLV 469

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
           ++G++L   M  +H    R++HY C+VD+LGRAG L+EA   I  +P      VW ALLG
Sbjct: 470 EKGMELLESMTNDHGISPRSEHYACVVDMLGRAGHLNEAKKFIEGLPEHGGVLVWQALLG 529

Query: 594 ACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKA 653
           AC IHG+ E+G+ AA  LF   P +P  YVL++ +YS+   WK+  +    M E G+ K 
Sbjct: 530 ACSIHGDSEMGKYAADRLFSAAPASPAPYVLMANIYSSEGNWKERASSIKRMKEMGVAKE 589

Query: 654 PAHSLIEVR 662
              S IE+ 
Sbjct: 590 VGISWIEIE 598



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 146/523 (27%), Positives = 248/523 (47%), Gaps = 32/523 (6%)

Query: 5   SHHTLPKTTHLVIK------LVQQYAATKSIAGTKQLHAFIITSGPLFTH---------L 49
           S +  P TT  ++       L+      +++     +HA II   P F           +
Sbjct: 20  SQYLFPSTTKSLLNHADLTSLLTLCGRDRNLTLGSSIHARIIKQPPSFDFDGSQRNALFI 79

Query: 50  RSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGE 106
            +SL+  Y   G   N   +FD M  R +  +NT++  + +NG    S K F  M     
Sbjct: 80  WNSLLSMYSKCGEFRNAGNVFDYMPVRDTVSWNTMISGFLRNGDFDTSFKFFKQMTESNR 139

Query: 107 Y--NPDNYTYPIVIKACTDLAWRKLGIA------LHGRVLITGFDMDTFVGNCLIAMYMN 158
                D  T   ++  C  L   +LGI+      +HG V + GF+ +  VGN LI  Y  
Sbjct: 140 VCCRFDKATLTTMLSGCDGL---RLGISTSVTQMIHGLVFVGGFEREITVGNALITSYFK 196

Query: 159 FGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG-VEPDCASVVS 217
                  RKVFD M E +VV+W  +ISG  +N + +++L +F  M   G V P+  + +S
Sbjct: 197 CECFSQGRKVFDEMIERNVVTWTAVISGLAQNEFYEDSLRLFAQMRCCGSVSPNVLTYLS 256

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
            L AC  L+ +  G+ IH L+    +  ++   +AL+D+Y KCGS++ A  +F+   E D
Sbjct: 257 SLMACSGLQVLRDGQKIHGLLWKLGMQSDLCIESALMDLYSKCGSLDAAWQIFESAEELD 316

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
            V+ T ++  +A NG    A+ +F  M   G+  ++  + ++L       YL  G+ +H+
Sbjct: 317 GVSLTVILVAFAQNGFEEEAIQIFTKMVALGMEVDANMVSAVLGVFGVGTYLALGKQIHS 376

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
             IK+N      V   L++MY+KC  +  S  VF + ++K +V WN+++A    +G   K
Sbjct: 377 LIIKKNFCENPFVGNGLVNMYSKCGDLSDSLLVFYQMTQKNSVSWNSVIAAFARHGDGFK 436

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLI 456
           A++ + +M VE V P D T  SLL A +    +++ M +   +   +G     E    ++
Sbjct: 437 ALQFYEEMRVEGVAPTDVTFLSLLHACSHAGLVEKGMELLESMTNDHGISPRSEHYACVV 496

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           D+  + G L  A K    +P +   ++VW  ++    +HG  E
Sbjct: 497 DMLGRAGHLNEAKKFIEGLP-EHGGVLVWQALLGACSIHGDSE 538


>gi|222629201|gb|EEE61333.1| hypothetical protein OsJ_15451 [Oryza sativa Japonica Group]
          Length = 1037

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 205/658 (31%), Positives = 345/658 (52%), Gaps = 8/658 (1%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILF 67
           T      ++   A  K+    +Q+HA  +  G      + SSL+  Y   G  S+ + +F
Sbjct: 334 TRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVF 393

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           D   E++  ++N ++  + QN    ++++MF  M+R      D +T+  ++ ACT L+  
Sbjct: 394 DLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRY-TLQTDEFTFVSILGACTYLSSF 452

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
            LG  +H   +    D+  FV N  + MY  +G +  A+ +F  +     +SWN L  G 
Sbjct: 453 YLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGL 512

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            +N   +EA+ +   M   G+ PD  S  + + AC  ++  E G+ IH L     +  N 
Sbjct: 513 AQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNH 572

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
           A  ++L+D+Y K G V  +R +F ++    +V   ++I G+  N +   A+ LFQ +  +
Sbjct: 573 AVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKD 632

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN-LECEVIVETALIDMYAKCNLVKL 366
           G++P+S+T  S+LS CS       G+ +H +T+K   L  + ++  +L  +Y K  +++ 
Sbjct: 633 GLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLED 692

Query: 367 SFQVFARTSKKKTV-PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
           + ++       K +  W AI++G   NG    ++  F +M    V  ++AT  S+L A +
Sbjct: 693 ANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACS 752

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            +        IH  + + GF S    ++ LID+YSKCG + S+ + F E+  K +DI+ W
Sbjct: 753 DVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNK-QDIMPW 811

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I G+  +G+ + A+ LF++M +  ++P+EVTF   L AC+H GL+ EG   F  M +
Sbjct: 812 NSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSMRK 871

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
            +    R DHY C +DLLGR G L EA + I  +P +P   VW   L AC +H + E G+
Sbjct: 872 VYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGK 931

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +AA+ L ELEP+    YVLLS L++A   W +A+  R+ M EKG+ K P  S I V N
Sbjct: 932 IAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWITVGN 989



 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 146/548 (26%), Positives = 292/548 (53%), Gaps = 16/548 (2%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           S + + G + +   L  +M   S+  +N V+  +AQ+G   + L ++  M   G + P  
Sbjct: 277 STLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLW-PTR 335

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T+  ++ A  ++     G  +H   ++ G D + FVG+ LI +Y   G    A+ VFD 
Sbjct: 336 STFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDL 395

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
             E ++V WN +++G+ +N   +EA+ +F +M++  ++ D  + VS+L AC YL    +G
Sbjct: 396 SCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLG 455

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           + +H +     +  ++   NA +DMY K G++ +A+ +F  +  +D ++W ++  G A N
Sbjct: 456 KQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQN 515

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
            +   A+ + + M+  G+ P+ ++  + ++ACS++   + G+ +H   IK  +     V 
Sbjct: 516 LEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVG 575

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
           ++LID+Y+K   V+ S ++FA+      VP NA++AG V N    +A++LF+Q+L + ++
Sbjct: 576 SSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLK 635

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL---SVVEVSTGLIDIYSKCGSLESA 468
           P+  T +S+L   +   +      +HCY ++ G L   +++ VS  L  IY K   LE A
Sbjct: 636 PSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVS--LAGIYLKSKMLEDA 693

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
           +K+ +E+P   K++  W+ II+GY  +G+G+ ++  F  M    V+ +E TF S L ACS
Sbjct: 694 NKLLTEMP-DHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACS 752

Query: 529 HGGLLDEGLDLFNFMLE----NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
                 +G ++   + +    +++T + A     ++D+  + G +  +++  + +  K  
Sbjct: 753 DVTAFADGKEIHGLITKSGFGSYETATSA-----LIDMYSKCGDVISSFEAFKELKNKQD 807

Query: 585 HAVWGALL 592
              W +++
Sbjct: 808 IMPWNSMI 815



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 149/544 (27%), Positives = 260/544 (47%), Gaps = 42/544 (7%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           + LH  I+  G PL   L  SLV  Y   G V           ER+S   ++++  +A++
Sbjct: 86  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 145

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G+  D L  F  +       PD +   +V+ AC+ +     G  +H  V+ +GF    F 
Sbjct: 146 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 205

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
              L+ MY   G+V  AR+VFD +     + W+++I+ Y +    +EAL +F  M K G 
Sbjct: 206 EAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGS 265

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            PD  ++V++               I  L + GRL                    + A  
Sbjct: 266 APDQVTLVTI---------------ISTLASSGRL--------------------DHATA 290

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +  +M     V W ++I+G+A +G   N LGL++ M+  G+ P   T  S+LSA +++  
Sbjct: 291 LLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKA 350

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
              G+ +HA  +   L+  V V ++LI++YAKC     +  VF  + +K  V WNA+L G
Sbjct: 351 FVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTG 410

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            V N L  +A+ +F+ M+   ++ ++ T  S+L A   L+       +HC  I+      
Sbjct: 411 FVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDIS 470

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           + V+   +D+YSK G++  A  +FS IP KD   + W+ +  G   +   E AV + K M
Sbjct: 471 LFVANATLDMYSKYGAIGDAKALFSLIPYKDS--ISWNALTVGLAQNLEEEEAVCMLKRM 528

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
              G+ P++V+F++A++ACS+    + G  +    ++ +  CS     + ++DL  + G 
Sbjct: 529 RLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIK-YGICSNHAVGSSLIDLYSKHGD 587

Query: 569 LDEA 572
           ++ +
Sbjct: 588 VESS 591



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 134/504 (26%), Positives = 250/504 (49%), Gaps = 42/504 (8%)

Query: 29  IAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKM 84
           +A  +Q+H  ++ SG        ++LV  Y   G V N R +FD ++   +  +++++  
Sbjct: 184 LAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIAC 243

Query: 85  YAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDM 144
           Y + G   ++L +F  M ++G   PD  T                        L+T    
Sbjct: 244 YHRVGCYQEALALFSRMDKMGS-APDQVT------------------------LVT---- 274

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
                  +I+   + G +  A  +   M   S V+WN +ISG+ ++      L ++  M 
Sbjct: 275 -------IISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMR 327

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
             G+ P  ++  S+L A   +K    G+ +H       L  N+   ++L+++Y KCG  +
Sbjct: 328 SWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPS 387

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
           +A+ VFD   E+++V W +M+ G+  N     A+ +FQ M    ++ +  T  S+L AC+
Sbjct: 388 DAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACT 447

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
            L     G+ +H  TIK  ++  + V  A +DMY+K   +  +  +F+    K ++ WNA
Sbjct: 448 YLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNA 507

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           +  G   N    +AV + ++M +  + P+D + ++ + A + +   +    IHC  I+YG
Sbjct: 508 LTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYG 567

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
             S   V + LID+YSK G +ES+ KIF++  +    IV  + +IAG+  + + + A+ L
Sbjct: 568 ICSNHAVGSSLIDLYSKHGDVESSRKIFAQ--VDASSIVPINALIAGFVQNNNEDEAIQL 625

Query: 505 FKEMVQSGVQPNEVTFTSALHACS 528
           F+++++ G++P+ VTF+S L  CS
Sbjct: 626 FQQVLKDGLKPSSVTFSSILSGCS 649



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 213/463 (46%), Gaps = 44/463 (9%)

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
           ALHGR+L  G  +   +G+ L+ +Y   G V  A        E +  + ++L+S + ++ 
Sbjct: 87  ALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSG 146

Query: 192 YAKEALVVFDWM-LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
              + L  F ++   +G  PD   +  VL AC  +  +  GR +H  V       ++   
Sbjct: 147 SPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCE 206

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
            ALVDMY KCG V  AR VFD ++  D + W+SMI  Y   G  + AL LF  M   G  
Sbjct: 207 AALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSA 266

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           P+ +T+ +++S  +S      GR  HA              TAL+               
Sbjct: 267 PDQVTLVTIISTLAS-----SGRLDHA--------------TALLK-------------- 293

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
             +     TV WNA+++G   +GL    + L++ M    + P  +T  S+L A A +   
Sbjct: 294 --KMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAF 351

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
            +   +H   + +G  + V V + LI++Y+KCG    A  +F      +K+IV+W+ ++ 
Sbjct: 352 VEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDL--SCEKNIVMWNAMLT 409

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           G+  +   E A+ +F+ M++  +Q +E TF S L AC++      G  +    ++N   C
Sbjct: 410 GFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKN---C 466

Query: 551 SRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
                +     +D+  + G + +A  L   +P K + + W AL
Sbjct: 467 MDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSIS-WNAL 508



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 114/273 (41%), Gaps = 45/273 (16%)

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           R+LH   ++        +  +L+++Y K   V  ++       ++ +   +++L+    +
Sbjct: 86  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 145

Query: 393 GLARKAVELFRQMLVEVV-EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEV 451
           G     +  FR +       P+   L  +L A + +  L     +HC +++ GF S V  
Sbjct: 146 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 205

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
              L+D+Y+KCG + +A ++F  I     D + WS +IA Y   G  + A++LF  M + 
Sbjct: 206 EAALVDMYAKCGDVPNARRVFDGIAC--PDTICWSSMIACYHRVGCYQEALALFSRMDKM 263

Query: 512 GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571
           G  P++VT  +                                    I+  L  +GRLD 
Sbjct: 264 GSAPDQVTLVT------------------------------------IISTLASSGRLDH 287

Query: 572 AYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
           A  L++ MP  P+   W A     VI G+ + G
Sbjct: 288 ATALLKKMP-TPSTVAWNA-----VISGHAQSG 314


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 193/600 (32%), Positives = 324/600 (54%), Gaps = 8/600 (1%)

Query: 67   FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
            FD+ S  + F +N  +  +   G    ++  F  +LR      D+ T  I++ A      
Sbjct: 853  FDQGS--NIFAWNKKLTEFLHAGQIVAAIDCFKTLLR-STIGHDSVTLVIILSAAVGADD 909

Query: 127  RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
              LG  +H  V+ + F     V N L+ MY   G V AA K F    E  ++SWNT+IS 
Sbjct: 910  LDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISS 969

Query: 187  YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE---MGRMIHELVAGGRL 243
            Y +N    EA+  F  +L+ G++PD  ++ SVL AC    E E   +G  +H       +
Sbjct: 970  YAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGI 1029

Query: 244  GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
              +     AL+D+Y K G ++EA  +     + D+ +W +++ GY  +   R AL  F L
Sbjct: 1030 INDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSL 1089

Query: 304  MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
            M   G+  + +T+ + + A   L  LK+G+ + A+ IK     ++ V + ++DMY KC  
Sbjct: 1090 MHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGD 1149

Query: 364  VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
            +  + ++F   S+   V W  +++G + NG    A+ ++  M V  V+P++ T  +L+ A
Sbjct: 1150 MPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKA 1209

Query: 424  YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
             + L  L+Q   IH  +++  +     V T L+D+Y KCGS++ A+++F ++ ++   +V
Sbjct: 1210 SSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK--VV 1267

Query: 484  VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
             W+ ++ G   HGH + A++LF+ M  +G+QP++VTF   L ACSH GL  E    F+ M
Sbjct: 1268 FWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAM 1327

Query: 544  LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
             + +      +HY+C+VD LGRAGR+ EA ++I +MP K + +++ ALLGAC   G+ E 
Sbjct: 1328 FKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAET 1387

Query: 604  GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
             +  A  L  L+P +   YVLLS +Y+A R+W D  + R++M  K ++K P  S I+V+N
Sbjct: 1388 AKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKN 1447



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 161/552 (29%), Positives = 276/552 (50%), Gaps = 39/552 (7%)

Query: 57   YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
            YG V   R+LFD+M ER + L+N ++K Y +N    ++L+ F    R G + PD      
Sbjct: 765  YGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSG-FFPDFSN--- 820

Query: 117  VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA-ARKVFDAMWEH 175
                            LH   +I G + D  V N       +  +VKA A K+F      
Sbjct: 821  ----------------LH--CVIGGVNSD--VSN---NRKRHAEQVKAYAMKMFPFDQGS 857

Query: 176  SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
            ++ +WN  ++ +        A+  F  +L+S +  D  ++V +L A     ++++G  IH
Sbjct: 858  NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIH 917

Query: 236  ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
             LV        +   N+L++MY K G V  A   F    E D+++W +MI+ YA N    
Sbjct: 918  ALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEM 977

Query: 296  NALGLFQLMQFEGVRPNSLTIGSLLSACSS---LYYLKRGRSLHAWTIKQNLECEVIVET 352
             A+  F+ +  +G++P+  T+ S+L ACS+     Y   G  +H + IK  +  +  V T
Sbjct: 978  EAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVST 1037

Query: 353  ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
            ALID+Y+K   +  +  +           WNAI+ G + +  +RKA+E F  M    +  
Sbjct: 1038 ALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPI 1097

Query: 413  NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
            ++ TL + + A   L +L+Q   I  Y I+ GF + + VS+G++D+Y KCG + +A ++F
Sbjct: 1098 DEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELF 1157

Query: 473  SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
             EI   D+  V W+ +I+GY  +G  + A+S++  M  SGVQP+E TF + + A S    
Sbjct: 1158 GEISRPDE--VAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTA 1215

Query: 533  LDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
            L++G  +   +++   +    DH+  T +VD+  + G + +AY + R M ++     W A
Sbjct: 1216 LEQGKQIHANVVKLDYSL---DHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKV-VFWNA 1271

Query: 591  LLGACVIHGNVE 602
            +L     HG+V+
Sbjct: 1272 MLLGLAQHGHVD 1283



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 141/480 (29%), Positives = 244/480 (50%), Gaps = 16/480 (3%)

Query: 33   KQLHAFIITS--GPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
            +Q+HA +I S   P+   + +SL+  Y   G V      F    E     +NT++  YAQ
Sbjct: 914  EQIHALVIKSSFAPVVP-VSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQ 972

Query: 88   NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT---DLAWRKLGIALHGRVLITGFDM 144
            N    +++  F  +LR G   PD +T   V++AC+   +  +  LG  +H   +  G   
Sbjct: 973  NNLEMEAICTFRDLLRDG-LKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIN 1031

Query: 145  DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
            D+FV   LI +Y   G++  A  +    ++  + SWN ++ GY K+  +++AL  F  M 
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMH 1091

Query: 205  KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW--NALVDMYVKCGS 262
            + G+  D  ++ + + A G L  ++ G+ I       +LG N   W  + ++DMY+KCG 
Sbjct: 1092 EMGIPIDEITLATAIKASGCLINLKQGKQIQAYAI--KLGFNNDLWVSSGVLDMYIKCGD 1149

Query: 263  VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
            +  A  +F  +S  D V WT+MI+GY  NGD  +AL ++ LM+  GV+P+  T  +L+ A
Sbjct: 1150 MPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKA 1209

Query: 323  CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
             S L  L++G+ +HA  +K +   +  V T+L+DMY KC  V+ +++VF +   +K V W
Sbjct: 1210 SSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFW 1269

Query: 383  NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
            NA+L G   +G   +A+ LFR M    ++P+  T   +L A +      +A      + +
Sbjct: 1270 NAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFK 1329

Query: 443  -YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
             YG    +E  + L+D   + G ++ A  + + +P K     ++  ++      G  ETA
Sbjct: 1330 TYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFK-ASASMYRALLGACRTKGDAETA 1388



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 242/506 (47%), Gaps = 40/506 (7%)

Query: 33   KQLHAFIITSGPLFT-HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
            K+ HA I+TSG L   +L ++L+  Y   G + + R +FD+ S+R    +N+++  YAQ 
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQF 690

Query: 89   GASH-----DSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD 143
              S      +  ++F G+LR   ++    T   ++K C    + ++   +HG  +  GF+
Sbjct: 691  ADSSYENVLEGFRLF-GLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFE 749

Query: 144  MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
            +D FV   L+ +Y  +G V  AR +FD M E   V WN ++  Y +N++  EAL  F   
Sbjct: 750  LDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAF 809

Query: 204  LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
             +SG  PD +++  V+   G   ++   R  H         + + A+   + M+      
Sbjct: 810  HRSGFFPDFSNLHCVI--GGVNSDVSNNRKRH--------AEQVKAY--AMKMF------ 851

Query: 264  NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
                  FD+ S  ++  W   +  +   G +  A+  F+ +    +  +S+T+  +LSA 
Sbjct: 852  -----PFDQGS--NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAA 904

Query: 324  SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
                 L  G  +HA  IK +    V V  +L++MY+K  +V  + + F  + +   + WN
Sbjct: 905  VGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWN 964

Query: 384  AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD---LQQAMNIHCYL 440
             +++    N L  +A+  FR +L + ++P+  TL S+L A +   +         +H Y 
Sbjct: 965  TMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYA 1024

Query: 441  IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
            I+ G ++   VST LID+YSK G ++ A  +       D D+  W+ I+ GY        
Sbjct: 1025 IKCGIINDSFVSTALIDLYSKGGKMDEAEFLLH--GKYDFDLASWNAIMFGYIKSNKSRK 1082

Query: 501  AVSLFKEMVQSGVQPNEVTFTSALHA 526
            A+  F  M + G+  +E+T  +A+ A
Sbjct: 1083 ALEHFSLMHEMGIPIDEITLATAIKA 1108



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 124/465 (26%), Positives = 211/465 (45%), Gaps = 42/465 (9%)

Query: 119  KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
            ++   +A  KLG   H R++ +G   D ++ N LI MY   G + +AR+VFD   +  +V
Sbjct: 619  RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 179  SWNTLISGYFKNAYAK-----EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
            +WN++++ Y + A +      E   +F  + + G      ++  +L  C     +++   
Sbjct: 679  TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738

Query: 234  IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
            +H          ++    ALV++Y K G V +ARL+FD+M ERD V W  M+  Y  N  
Sbjct: 739  VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 294  VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
               AL  F      G  P+   +  ++   +S     R R  HA  +K            
Sbjct: 799  QDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKR--HAEQVK------------ 844

Query: 354  LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
                YA         ++F          WN  L   +H G    A++ F+ +L   +  +
Sbjct: 845  ---AYA--------MKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHD 893

Query: 414  DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
              TL  +L A     DL     IH  +I+  F  VV VS  L+++YSK G + +A K F 
Sbjct: 894  SVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFI 953

Query: 474  EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
              P  + D++ W+ +I+ Y  +     A+  F+++++ G++P++ T  S L ACS G   
Sbjct: 954  NSP--ELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG--- 1008

Query: 534  DEGLDLFNFMLENHQTCSRA----DHY--TCIVDLLGRAGRLDEA 572
            DEG + F    + H    +     D +  T ++DL  + G++DEA
Sbjct: 1009 DEG-EYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 193/600 (32%), Positives = 324/600 (54%), Gaps = 8/600 (1%)

Query: 67   FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
            FD+ S  + F +N  +  +   G    ++  F  +LR      D+ T  I++ A      
Sbjct: 853  FDQGS--NIFAWNKKLTEFLHAGQIVAAIDCFKTLLR-STIGHDSVTLVIILSAAVGADD 909

Query: 127  RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
              LG  +H  V+ + F     V N L+ MY   G V AA K F    E  ++SWNT+IS 
Sbjct: 910  LDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISS 969

Query: 187  YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE---MGRMIHELVAGGRL 243
            Y +N    EA+  F  +L+ G++PD  ++ SVL AC    E E   +G  +H       +
Sbjct: 970  YAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGI 1029

Query: 244  GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
              +     AL+D+Y K G ++EA  +     + D+ +W +++ GY  +   R AL  F L
Sbjct: 1030 INDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSL 1089

Query: 304  MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
            M   G+  + +T+ + + A   L  LK+G+ + A+ IK     ++ V + ++DMY KC  
Sbjct: 1090 MHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGD 1149

Query: 364  VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
            +  + ++F   S+   V W  +++G + NG    A+ ++  M V  V+P++ T  +L+ A
Sbjct: 1150 MPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKA 1209

Query: 424  YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
             + L  L+Q   IH  +++  +     V T L+D+Y KCGS++ A+++F ++ ++   +V
Sbjct: 1210 SSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK--VV 1267

Query: 484  VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
             W+ ++ G   HGH + A++LF+ M  +G+QP++VTF   L ACSH GL  E    F+ M
Sbjct: 1268 FWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAM 1327

Query: 544  LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
             + +      +HY+C+VD LGRAGR+ EA ++I +MP K + +++ ALLGAC   G+ E 
Sbjct: 1328 FKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAET 1387

Query: 604  GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
             +  A  L  L+P +   YVLLS +Y+A R+W D  + R++M  K ++K P  S I+V+N
Sbjct: 1388 AKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKN 1447



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 161/552 (29%), Positives = 276/552 (50%), Gaps = 39/552 (7%)

Query: 57   YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
            YG V   R+LFD+M ER + L+N ++K Y +N    ++L+ F    R G + PD      
Sbjct: 765  YGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSG-FXPDFSN--- 820

Query: 117  VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA-ARKVFDAMWEH 175
                            LH   +I G + D  V N       +  +VKA A K+F      
Sbjct: 821  ----------------LH--CVIGGVNSD--VSN---NRKRHAEQVKAYAMKMFPFDQGS 857

Query: 176  SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
            ++ +WN  ++ +        A+  F  +L+S +  D  ++V +L A     ++++G  IH
Sbjct: 858  NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIH 917

Query: 236  ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
             LV        +   N+L++MY K G V  A   F    E D+++W +MI+ YA N    
Sbjct: 918  ALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEM 977

Query: 296  NALGLFQLMQFEGVRPNSLTIGSLLSACSS---LYYLKRGRSLHAWTIKQNLECEVIVET 352
             A+  F+ +  +G++P+  T+ S+L ACS+     Y   G  +H + IK  +  +  V T
Sbjct: 978  EAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVST 1037

Query: 353  ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
            ALID+Y+K   +  +  +           WNAI+ G + +  +RKA+E F  M    +  
Sbjct: 1038 ALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPI 1097

Query: 413  NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
            ++ TL + + A   L +L+Q   I  Y I+ GF + + VS+G++D+Y KCG + +A ++F
Sbjct: 1098 DEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELF 1157

Query: 473  SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
             EI   D+  V W+ +I+GY  +G  + A+S++  M  SGVQP+E TF + + A S    
Sbjct: 1158 GEISRPDE--VAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTA 1215

Query: 533  LDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
            L++G  +   +++   +    DH+  T +VD+  + G + +AY + R M ++     W A
Sbjct: 1216 LEQGKQIHANVVKLDYSL---DHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKV-VFWNA 1271

Query: 591  LLGACVIHGNVE 602
            +L     HG+V+
Sbjct: 1272 MLLGLAQHGHVD 1283



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 141/480 (29%), Positives = 244/480 (50%), Gaps = 16/480 (3%)

Query: 33   KQLHAFIITS--GPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
            +Q+HA +I S   P+   + +SL+  Y   G V      F    E     +NT++  YAQ
Sbjct: 914  EQIHALVIKSSFAPVVP-VSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQ 972

Query: 88   NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT---DLAWRKLGIALHGRVLITGFDM 144
            N    +++  F  +LR G   PD +T   V++AC+   +  +  LG  +H   +  G   
Sbjct: 973  NNLEMEAICTFRDLLRDG-LKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIIN 1031

Query: 145  DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
            D+FV   LI +Y   G++  A  +    ++  + SWN ++ GY K+  +++AL  F  M 
Sbjct: 1032 DSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMH 1091

Query: 205  KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW--NALVDMYVKCGS 262
            + G+  D  ++ + + A G L  ++ G+ I       +LG N   W  + ++DMY+KCG 
Sbjct: 1092 EMGIPIDEITLATAIKASGCLINLKQGKQIQAYAI--KLGFNNDLWVSSGVLDMYIKCGD 1149

Query: 263  VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
            +  A  +F  +S  D V WT+MI+GY  NGD  +AL ++ LM+  GV+P+  T  +L+ A
Sbjct: 1150 MPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKA 1209

Query: 323  CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
             S L  L++G+ +HA  +K +   +  V T+L+DMY KC  V+ +++VF +   +K V W
Sbjct: 1210 SSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFW 1269

Query: 383  NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
            NA+L G   +G   +A+ LFR M    ++P+  T   +L A +      +A      + +
Sbjct: 1270 NAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFK 1329

Query: 443  -YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
             YG    +E  + L+D   + G ++ A  + + +P K     ++  ++      G  ETA
Sbjct: 1330 TYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFK-ASASMYRALLGACRTKGDAETA 1388



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 242/506 (47%), Gaps = 40/506 (7%)

Query: 33   KQLHAFIITSGPLFT-HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
            K+ HA I+TSG L   +L ++L+  Y   G + + R +FD+ S+R    +N+++  YAQ 
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQF 690

Query: 89   GASH-----DSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD 143
              S      +  ++F G+LR   ++    T   ++K C    + ++   +HG  +  GF+
Sbjct: 691  ADSSYENVLEGFRLF-GLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFE 749

Query: 144  MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
            +D FV   L+ +Y  +G V  AR +FD M E   V WN ++  Y +N++  EAL  F   
Sbjct: 750  LDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAF 809

Query: 204  LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
             +SG  PD +++  V+   G   ++   R  H         + + A+   + M+      
Sbjct: 810  HRSGFXPDFSNLHCVI--GGVNSDVSNNRKRH--------AEQVKAY--AMKMF------ 851

Query: 264  NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
                  FD+ S  ++  W   +  +   G +  A+  F+ +    +  +S+T+  +LSA 
Sbjct: 852  -----PFDQGS--NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAA 904

Query: 324  SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
                 L  G  +HA  IK +    V V  +L++MY+K  +V  + + F  + +   + WN
Sbjct: 905  VGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWN 964

Query: 384  AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD---LQQAMNIHCYL 440
             +++    N L  +A+  FR +L + ++P+  TL S+L A +   +         +H Y 
Sbjct: 965  TMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYA 1024

Query: 441  IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
            I+ G ++   VST LID+YSK G ++ A  +       D D+  W+ I+ GY        
Sbjct: 1025 IKCGIINDSFVSTALIDLYSKGGKMDEAEFLLH--GKYDFDLASWNAIMFGYIKSNKSRK 1082

Query: 501  AVSLFKEMVQSGVQPNEVTFTSALHA 526
            A+  F  M + G+  +E+T  +A+ A
Sbjct: 1083 ALEHFSLMHEMGIPIDEITLATAIKA 1108



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 124/465 (26%), Positives = 211/465 (45%), Gaps = 42/465 (9%)

Query: 119  KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
            ++   +A  KLG   H R++ +G   D ++ N LI MY   G + +AR+VFD   +  +V
Sbjct: 619  RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 179  SWNTLISGYFKNAYAK-----EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
            +WN++++ Y + A +      E   +F  + + G      ++  +L  C     +++   
Sbjct: 679  TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738

Query: 234  IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
            +H          ++    ALV++Y K G V +ARL+FD+M ERD V W  M+  Y  N  
Sbjct: 739  VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 294  VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
               AL  F      G  P+   +  ++   +S     R R  HA  +K            
Sbjct: 799  QDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKR--HAEQVK------------ 844

Query: 354  LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
                YA         ++F          WN  L   +H G    A++ F+ +L   +  +
Sbjct: 845  ---AYA--------MKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHD 893

Query: 414  DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
              TL  +L A     DL     IH  +I+  F  VV VS  L+++YSK G + +A K F 
Sbjct: 894  SVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFI 953

Query: 474  EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
              P  + D++ W+ +I+ Y  +     A+  F+++++ G++P++ T  S L ACS G   
Sbjct: 954  NSP--ELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG--- 1008

Query: 534  DEGLDLFNFMLENHQTCSRA----DHY--TCIVDLLGRAGRLDEA 572
            DEG + F    + H    +     D +  T ++DL  + G++DEA
Sbjct: 1009 DEG-EYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 201/603 (33%), Positives = 322/603 (53%), Gaps = 10/603 (1%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           M +R+   +N+++  Y Q G  H+ + +F    R+ +   D +T+   +  C      +L
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLF-KEARMSDLRLDKFTFSNALSVCGRTLDLRL 59

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  +H  + ++G      + N LI MY   G +  AR VF++  E   VSWN+LI+GY +
Sbjct: 60  GRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVR 119

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG--YLKEIEMGRMIHELVAGGRLGKNI 247
                E L +   ML+ G+  +  ++ S L ACG  +   IE G+M+H       L  ++
Sbjct: 120 IGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDV 179

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY----ALNGDVRN-ALGLFQ 302
               AL+D Y K G + +A  +F  M + +VV + +MI G+     +  +  N A+ LF 
Sbjct: 180 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 239

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            MQ  G++P+  T  S+L ACS++   + G+ +HA   K NL+ +  +  AL+++Y+   
Sbjct: 240 EMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSG 299

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            ++   + F  T K   V W +++ G V NG     + LF ++L    +P++ T++ +L 
Sbjct: 300 SIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLS 359

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A A LA ++    IH Y I+ G  +   +    I +Y+KCG ++SA+  F E   K+ DI
Sbjct: 360 ACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKET--KNPDI 417

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
           V WSV+I+    HG  + AV LF+ M  SG+ PN +TF   L ACSHGGL++EGL  F  
Sbjct: 418 VSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEI 477

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           M ++H       H  CIVDLLGRAGRL EA   I     +    +W +LL AC +H   +
Sbjct: 478 MKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATD 537

Query: 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
            G+  A+ + ELEPE   +YVLL  +Y+       A  +R++M ++G++K P  S IEV 
Sbjct: 538 TGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVG 597

Query: 663 NIL 665
           N++
Sbjct: 598 NVV 600



 Score = 38.9 bits (89), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 51/265 (19%), Positives = 115/265 (43%), Gaps = 35/265 (13%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILF 67
           T  +++      AA KS    +Q+HA+ I +G   FT +++S +  Y   G + +  + F
Sbjct: 353 TISIMLSACANLAAVKS---GEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTF 409

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
            E        ++ ++   AQ+G + +++ +F  +++     P++ T+  V+ AC+     
Sbjct: 410 KETKNPDIVSWSVMISSNAQHGCAKEAVDLF-ELMKGSGIAPNHITFLGVLVACSHGGLV 468

Query: 128 KLGIALHGRVLITGFDMDTFVGN--CLIAMYMNFGEVKAARK-VFDAMWEHSVVSWNTLI 184
           + G+  +  ++     +   V +  C++ +    G +  A   + D+ +E   V W +L+
Sbjct: 469 EEGLR-YFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLL 527

Query: 185 SG------------------YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           S                     +   A   +++++    +G++     + +++   G  K
Sbjct: 528 SACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKK 587

Query: 227 E-----IEMGRMIHELVAGGRLGKN 246
           E     IE+G ++H  VAG R   N
Sbjct: 588 EPGLSWIEVGNVVHSFVAGDRSHPN 612


>gi|116310835|emb|CAH67622.1| OSIGBa0140J09.3 [Oryza sativa Indica Group]
          Length = 1027

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 205/658 (31%), Positives = 345/658 (52%), Gaps = 8/658 (1%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILF 67
           T      ++   A  K+    +Q+HA  +  G      + SSL+  Y   G  S+ + +F
Sbjct: 324 TRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVF 383

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           D   E++  ++N ++  + QN    ++++MF  M+R      D +T+  ++ ACT L+  
Sbjct: 384 DLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRY-TLQTDEFTFVSILGACTYLSSF 442

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
            LG  +H   +    D+  FV N  + MY  +G +  A+ +F  +     +SWN L  G 
Sbjct: 443 YLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGL 502

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            +N   +EA+ +   M   G+ PD  S  + + AC  ++  E G+ IH L     +  N 
Sbjct: 503 AQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNH 562

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
           A  ++L+D+Y K G V  +R +F ++    +V   ++I G+  N +   A+ LFQ +  +
Sbjct: 563 AVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKD 622

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN-LECEVIVETALIDMYAKCNLVKL 366
           G++P+S+T  S+LS CS       G+ +H +T+K   L  + ++  +L  +Y K  +++ 
Sbjct: 623 GLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLED 682

Query: 367 SFQVFARTSKKKTV-PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
           + ++       K +  W AI++G   NG    ++  F +M    V  ++AT  S+L A +
Sbjct: 683 ANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACS 742

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            +        IH  + + GF S    ++ LID+YSKCG + S+ + F E+  K +DI+ W
Sbjct: 743 DVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNK-QDIMPW 801

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I G+  +G+ + A+ LF++M +  ++P+EVTF   L AC+H GL+ EG   F  M +
Sbjct: 802 NSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGPMRK 861

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
            +    R DHY C +DLLGR G L EA + I  +P +P   VW   L AC +H + E G+
Sbjct: 862 VYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYLAACRMHKDEERGK 921

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +AA+ L ELEP+    YVLLS L++A   W +A+  R+ M EKG+ K P  S I V N
Sbjct: 922 IAARKLVELEPQYSSTYVLLSSLHAATGNWAEAKVTRESMREKGVAKFPGCSWITVGN 979



 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 146/548 (26%), Positives = 292/548 (53%), Gaps = 16/548 (2%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           S + + G + +   L  +M   S+  +N V+  +AQ+G   + L ++  M   G + P  
Sbjct: 267 STLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLW-PTR 325

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T+  ++ A  ++     G  +H   ++ G D + FVG+ LI +Y   G    A+ VFD 
Sbjct: 326 STFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDL 385

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
             E ++V WN +++G+ +N   +EA+ +F +M++  ++ D  + VS+L AC YL    +G
Sbjct: 386 SCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLG 445

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           + +H +     +  ++   NA +DMY K G++ +A+ +F  +  +D ++W ++  G A N
Sbjct: 446 KQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQN 505

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
            +   A+ + + M+  G+ P+ ++  + ++ACS++   + G+ +H   IK  +     V 
Sbjct: 506 LEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVG 565

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
           ++LID+Y+K   V+ S ++FA+      VP NA++AG V N    +A++LF+Q+L + ++
Sbjct: 566 SSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLK 625

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL---SVVEVSTGLIDIYSKCGSLESA 468
           P+  T +S+L   +   +      +HCY ++ G L   +++ VS  L  IY K   LE A
Sbjct: 626 PSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSGVLYDDTLLGVS--LAGIYLKSKMLEDA 683

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
           +K+ +E+P   K++  W+ II+GY  +G+G+ ++  F  M    V+ +E TF S L ACS
Sbjct: 684 NKLLTEMP-DHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACS 742

Query: 529 HGGLLDEGLDLFNFMLE----NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
                 +G ++   + +    +++T + A     ++D+  + G +  +++  + +  K  
Sbjct: 743 DVTAFADGKEIHGLITKSGFGSYETATSA-----LIDMYSKCGDVISSFEAFKELKNKQD 797

Query: 585 HAVWGALL 592
              W +++
Sbjct: 798 IMPWNSMI 805



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 149/544 (27%), Positives = 260/544 (47%), Gaps = 42/544 (7%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           + LH  I+  G PL   L  SLV  Y   G V           ER+S   ++++  +A++
Sbjct: 76  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 135

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G+  D L  F  +       PD +   +V+ AC+ +     G  +H  V+ +GF    F 
Sbjct: 136 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 195

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
              L+ MY   G+V  AR+VFD +     + W+++I+ Y +    +EAL +F  M K G 
Sbjct: 196 EAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGS 255

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            PD  ++V++               I  L + GRL                    + A  
Sbjct: 256 APDQVTLVTI---------------ISTLASSGRL--------------------DHATA 280

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +  +M     V W ++I+G+A +G   N LGL++ M+  G+ P   T  S+LSA +++  
Sbjct: 281 LLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKA 340

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
              G+ +HA  +   L+  V V ++LI++YAKC     +  VF  + +K  V WNA+L G
Sbjct: 341 FVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTG 400

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            V N L  +A+ +F+ M+   ++ ++ T  S+L A   L+       +HC  I+      
Sbjct: 401 FVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDIS 460

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           + V+   +D+YSK G++  A  +FS IP KD   + W+ +  G   +   E AV + K M
Sbjct: 461 LFVANATLDMYSKYGAIGDAKALFSLIPYKDS--ISWNALTVGLAQNLEEEEAVCMLKRM 518

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
              G+ P++V+F++A++ACS+    + G  +    ++ +  CS     + ++DL  + G 
Sbjct: 519 RLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIK-YGICSNHAVGSSLIDLYSKHGD 577

Query: 569 LDEA 572
           ++ +
Sbjct: 578 VESS 581



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 134/504 (26%), Positives = 250/504 (49%), Gaps = 42/504 (8%)

Query: 29  IAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKM 84
           +A  +Q+H  ++ SG        ++LV  Y   G V N R +FD ++   +  +++++  
Sbjct: 174 LAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIAC 233

Query: 85  YAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDM 144
           Y + G   ++L +F  M ++G   PD  T                        L+T    
Sbjct: 234 YHRVGCYQEALALFSRMDKMGS-APDQVT------------------------LVT---- 264

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
                  +I+   + G +  A  +   M   S V+WN +ISG+ ++      L ++  M 
Sbjct: 265 -------IISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMR 317

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
             G+ P  ++  S+L A   +K    G+ +H       L  N+   ++L+++Y KCG  +
Sbjct: 318 SWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPS 377

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
           +A+ VFD   E+++V W +M+ G+  N     A+ +FQ M    ++ +  T  S+L AC+
Sbjct: 378 DAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACT 437

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
            L     G+ +H  TIK  ++  + V  A +DMY+K   +  +  +F+    K ++ WNA
Sbjct: 438 YLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNA 497

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           +  G   N    +AV + ++M +  + P+D + ++ + A + +   +    IHC  I+YG
Sbjct: 498 LTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYG 557

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
             S   V + LID+YSK G +ES+ KIF+++      IV  + +IAG+  + + + A+ L
Sbjct: 558 ICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDA--SSIVPINALIAGFVQNNNEDEAIQL 615

Query: 505 FKEMVQSGVQPNEVTFTSALHACS 528
           F+++++ G++P+ VTF+S L  CS
Sbjct: 616 FQQVLKDGLKPSSVTFSSILSGCS 639



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 213/463 (46%), Gaps = 44/463 (9%)

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
           ALHGR+L  G  +   +G+ L+ +Y   G V  A        E +  + ++L+S + ++ 
Sbjct: 77  ALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSG 136

Query: 192 YAKEALVVFDWM-LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
              + L  F ++   +G  PD   +  VL AC  +  +  GR +H  V       ++   
Sbjct: 137 SPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCE 196

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
            ALVDMY KCG V  AR VFD ++  D + W+SMI  Y   G  + AL LF  M   G  
Sbjct: 197 AALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSA 256

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           P+ +T+ +++S  +S      GR  HA              TAL+               
Sbjct: 257 PDQVTLVTIISTLAS-----SGRLDHA--------------TALLK-------------- 283

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
             +     TV WNA+++G   +GL    + L++ M    + P  +T  S+L A A +   
Sbjct: 284 --KMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAF 341

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
            +   +H   + +G  + V V + LI++Y+KCG    A  +F      +K+IV+W+ ++ 
Sbjct: 342 VEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSC--EKNIVMWNAMLT 399

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           G+  +   E A+ +F+ M++  +Q +E TF S L AC++      G  +    ++N   C
Sbjct: 400 GFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKN---C 456

Query: 551 SRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
                +     +D+  + G + +A  L   +P K + + W AL
Sbjct: 457 MDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSIS-WNAL 498



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 114/273 (41%), Gaps = 45/273 (16%)

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           R+LH   ++        +  +L+++Y K   V  ++       ++ +   +++L+    +
Sbjct: 76  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 135

Query: 393 GLARKAVELFRQMLVEVV-EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEV 451
           G     +  FR +       P+   L  +L A + +  L     +HC +++ GF S V  
Sbjct: 136 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 195

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
              L+D+Y+KCG + +A ++F  I     D + WS +IA Y   G  + A++LF  M + 
Sbjct: 196 EAALVDMYAKCGDVPNARRVFDGIAC--PDTICWSSMIACYHRVGCYQEALALFSRMDKM 253

Query: 512 GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571
           G  P++VT  +                                    I+  L  +GRLD 
Sbjct: 254 GSAPDQVTLVT------------------------------------IISTLASSGRLDH 277

Query: 572 AYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
           A  L++ MP  P+   W A     VI G+ + G
Sbjct: 278 ATALLKKMP-TPSTVAWNA-----VISGHAQSG 304


>gi|242041975|ref|XP_002468382.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
 gi|241922236|gb|EER95380.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
          Length = 1026

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 196/619 (31%), Positives = 332/619 (53%), Gaps = 9/619 (1%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           S+LV  Y   G + +  +LF   +E+++ L+N+++  Y  N   + +L  F  M ++   
Sbjct: 381 SALVSMYSKLGKLDSSSLLFCCFTEKNNILWNSMISGYLVNNEWNMALDAFCKM-QIAGV 439

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PD  T   VI  C       +  ++H   +   F+    V N L+AMY + G++  +  
Sbjct: 440 APDATTVINVISGCRYTKDLHVAKSIHAYAVRNRFESYQSVMNALLAMYADCGDISTSYT 499

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F  M    ++SWNT+ISG+ +   ++ +L +F  M    V  D  +++ ++ +    ++
Sbjct: 500 LFQKMEVRMLISWNTMISGFAEIGDSETSLTLFCQMFHEEVWFDLVTLIGLISSLSVSED 559

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
             +G  +H L        +++  NAL+ MY  CG V   + +F+    R+ +T+ ++++G
Sbjct: 560 AIVGESVHSLAIKSGCISDVSLTNALITMYANCGIVEAGQQLFNSFCSRNTITYNALMSG 619

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y  N      L LF  M     +PN +T+ +LL  C S     +G+ +H++ ++     E
Sbjct: 620 YRKNNVSEKILPLFTQMVKNDEKPNLVTLLNLLPVCQSQL---QGKCIHSYAVRNFTRLE 676

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
             + T+ + MY++ N ++    +F+  S +  + WNA L+ CV    A   V+ F+ ML 
Sbjct: 677 TPLFTSAMGMYSRFNNIEYCRTIFSLVSARNLIVWNAFLSACVQCKQADMVVDYFKHMLF 736

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
             V P++ T+ +L+ A + L +   A  I   +++ GF   + V   LID +S+CGS+  
Sbjct: 737 LNVRPDEVTMLALISACSQLGNADFAACIMAVILQKGFSMNILVLNALIDTHSRCGSISF 796

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A ++F      +KD V W  +I  Y MHG+GE A+ LF  M+ SGV P+++TF S L AC
Sbjct: 797 ARELFDSSV--EKDSVTWGAMINAYSMHGNGEAALDLFSMMIDSGVDPDDITFVSILSAC 854

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           SH GL+++G  LF  +  +H    R +HY C+VDLLGR G LDEAYD++R+MP  P+  +
Sbjct: 855 SHNGLVEQGRTLFKSLQADHGITPRMEHYACMVDLLGRTGHLDEAYDIVRSMPFTPSDNL 914

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
             +LLGAC  HGN ++GE   K L + E     +YV+LS +Y++  +W D E +R  M+ 
Sbjct: 915 LESLLGACRFHGNYKIGESVGKLLIKSEYGKSRSYVMLSNIYASAGKWSDCEQLRLDMEA 974

Query: 648 KGLRKAPAHSLIEVRNILT 666
           KGLRK      +E + + T
Sbjct: 975 KGLRKNVGVRKLESQGVPT 993



 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 147/510 (28%), Positives = 271/510 (53%), Gaps = 12/510 (2%)

Query: 26  TKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAY---GHVSNVRILFDEMSERSSFLY--N 79
           T S+   +++HA +  +G +    + + LV  Y   G  ++  +LF E       +Y  N
Sbjct: 51  TCSLKCLREIHARLAVAGAIQDRFVVTGLVERYVSFGKPASAALLFAEAYRGRPAVYSLN 110

Query: 80  TVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLI 139
            V++ ++ +G   + L ++ G+   G    DN+T+P VI+ACT  +  +LG  +H RVL 
Sbjct: 111 LVVRCFSDHGFHRELLDLYRGLCGFGS---DNFTFPPVIRACTAASCLQLGRQVHCRVLR 167

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
           TG   +  V   L+ MY   G++  +R+VFD M    ++SWN ++SGY  N   +EA+  
Sbjct: 168 TGHGSNVGVQTALLDMYAKAGQIDVSRRVFDCMVLRDLISWNAMVSGYSVNGCFREAVET 227

Query: 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVK 259
              M + G+ P+ +++V ++  CG   +   G  +H     G    + +  +AL+ MY  
Sbjct: 228 LQEMQQCGMSPNASTLVGIVGMCGSAGDRVAGDSLHAFALKGGTIDDESLTSALISMYAA 287

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
              ++ +RLVFD    +D+V++ SMI+ Y  + + + A  +F+LM   GV PN +T+ S+
Sbjct: 288 FDDLSSSRLVFDLQPVKDLVSFNSMISAYMQHSNWKEAFEVFRLMHCAGVGPNLITLVSV 347

Query: 320 LSACSSLYY-LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           L +CS L + +  G S+H   IK  L  +V V +AL+ MY+K   +  S  +F   ++K 
Sbjct: 348 LPSCSDLLFGINHGESVHGMIIKLGLAEQVSVVSALVSMYSKLGKLDSSSLLFCCFTEKN 407

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
            + WN++++G + N     A++ F +M +  V P+  T+ +++       DL  A +IH 
Sbjct: 408 NILWNSMISGYLVNNEWNMALDAFCKMQIAGVAPDATTVINVISGCRYTKDLHVAKSIHA 467

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           Y +R  F S   V   L+ +Y+ CG + +++ +F ++ +  + ++ W+ +I+G+   G  
Sbjct: 468 YAVRNRFESYQSVMNALLAMYADCGDISTSYTLFQKMEV--RMLISWNTMISGFAEIGDS 525

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
           ET+++LF +M    V  + VT    + + S
Sbjct: 526 ETSLTLFCQMFHEEVWFDLVTLIGLISSLS 555



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 159/599 (26%), Positives = 297/599 (49%), Gaps = 20/599 (3%)

Query: 3   GPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---G 58
           G  + T P        +++   A   +   +Q+H  ++ +G      ++++L+  Y   G
Sbjct: 136 GSDNFTFPP-------VIRACTAASCLQLGRQVHCRVLRTGHGSNVGVQTALLDMYAKAG 188

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
            +   R +FD M  R    +N ++  Y+ NG   ++++    M + G  +P+  T   ++
Sbjct: 189 QIDVSRRVFDCMVLRDLISWNAMVSGYSVNGCFREAVETLQEMQQCG-MSPNASTLVGIV 247

Query: 119 KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
             C     R  G +LH   L  G   D  + + LI+MY  F ++ ++R VFD      +V
Sbjct: 248 GMCGSAGDRVAGDSLHAFALKGGTIDDESLTSALISMYAAFDDLSSSRLVFDLQPVKDLV 307

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG-YLKEIEMGRMIHEL 237
           S+N++IS Y +++  KEA  VF  M  +GV P+  ++VSVLP+C   L  I  G  +H +
Sbjct: 308 SFNSMISAYMQHSNWKEAFEVFRLMHCAGVGPNLITLVSVLPSCSDLLFGINHGESVHGM 367

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +    L + ++  +ALV MY K G ++ + L+F   +E++ + W SMI+GY +N +   A
Sbjct: 368 IIKLGLAEQVSVVSALVSMYSKLGKLDSSSLLFCCFTEKNNILWNSMISGYLVNNEWNMA 427

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L  F  MQ  GV P++ T+ +++S C     L   +S+HA+ ++   E    V  AL+ M
Sbjct: 428 LDAFCKMQIAGVAPDATTVINVISGCRYTKDLHVAKSIHAYAVRNRFESYQSVMNALLAM 487

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YA C  +  S+ +F +   +  + WN +++G    G +  ++ LF QM  E V  +  TL
Sbjct: 488 YADCGDISTSYTLFQKMEVRMLISWNTMISGFAEIGDSETSLTLFCQMFHEEVWFDLVTL 547

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
             L+ + ++  D     ++H   I+ G +S V ++  LI +Y+ CG +E+  ++F+    
Sbjct: 548 IGLISSLSVSEDAIVGESVHSLAIKSGCISDVSLTNALITMYANCGIVEAGQQLFNSFC- 606

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
             ++ + ++ +++GY  +   E  + LF +MV++  +PN VT  + L  C       +G 
Sbjct: 607 -SRNTITYNALMSGYRKNNVSEKILPLFTQMVKNDEKPNLVTLLNLLPVCQSQL---QGK 662

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
            + ++ + N  T      +T  + +  R   ++    +   +  +    VW A L ACV
Sbjct: 663 CIHSYAVRNF-TRLETPLFTSAMGMYSRFNNIEYCRTIFSLVSARNL-IVWNAFLSACV 719


>gi|326490736|dbj|BAJ90035.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511421|dbj|BAJ87724.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 801

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 217/634 (34%), Positives = 354/634 (55%), Gaps = 27/634 (4%)

Query: 49  LRSSLVRAY--------GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLG 100
           LR+SL+  Y        G V  VR LFD M +++   +NT+   Y + G   ++L+MF  
Sbjct: 139 LRNSLLNLYASCARHRRGGVDVVRRLFDAMPKKNVVSWNTLFGWYVKTGRPDEALEMFAR 198

Query: 101 MLRLG-EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDM--DTFVGNCLIAMYM 157
           ML  G    P ++          D +W  L   L+G ++  G +   D FV +  I M+ 
Sbjct: 199 MLEDGVRPTPVSFVNVFPAAGSGDPSWPFL---LYGLLIKHGVEYVNDLFVVSSAIGMFS 255

Query: 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP-DCASVV 216
              +V++AR VFD   + ++  WNT+I+GY +N    +A+ +F  +L S   P D  + +
Sbjct: 256 EISDVQSARMVFDRAGKKNIEVWNTMITGYVQNGQFSQAMDLFIQILGSKEVPSDVVTFL 315

Query: 217 SVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE 275
           S + A    +++ +G+ +H  L+ G      +   NALV MY +CG+V  A  +FDR+ E
Sbjct: 316 SAVTAASQSQDVRLGQQLHGYLMKGMHSTLPVILGNALVVMYSRCGNVQTAFELFDRLPE 375

Query: 276 RDVVTWTSMINGYALNG-DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
           +D+V+W +MI  +  N  D+   L ++Q MQ  G  P+++T+ ++LSA S+   L+ G+ 
Sbjct: 376 KDIVSWNTMITAFVQNDFDLEGLLLVYQ-MQKSGFIPDTVTLTAVLSAASNTGDLQIGKQ 434

Query: 335 LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF-ARTSKKKTVPWNAILAGCVHNG 393
            H + I+  +E E + E+ LIDMY+K   + ++ +VF    + +  V WNA++AG   +G
Sbjct: 435 SHGYLIRHGIEGEGL-ESYLIDMYSKSGRIDMAQRVFDGYGNDRDEVTWNAMIAGYTQSG 493

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAY-AILADLQQAMNIHCYLIRYGFLSVVEVS 452
              +AV  FR M+   VEP   TL S+LPA   +   +     IH + +R+   + V V 
Sbjct: 494 QPEQAVLQFRAMIEAGVEPTSVTLASVLPACDPVGGGVCAGKQIHSFALRHSLDTNVFVG 553

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
           T L+D+YSKCG + +A  +F  +   +K  V ++ +I+G G HG GE A+SLF  M   G
Sbjct: 554 TALVDMYSKCGEISAAENVFGGM--TEKSTVTYTTMISGLGQHGFGERALSLFYSMRDKG 611

Query: 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572
           ++P+ VTF +A+ AC++ GL+DEGL L+  M E     +   H+ CIVDLL +AGR+DEA
Sbjct: 612 LKPDAVTFLAAISACNYSGLVDEGLSLYRSM-ETFGLAATPQHHCCIVDLLAKAGRVDEA 670

Query: 573 YDLIRTMPLKPTH-AVWGALLGACVIHGNVELGEVAAKWLFELEPE--NPGNYVLLSKLY 629
           YD + ++       A+WG+LL +C   G +EL   A + +  +E +  + G  VLLS+L+
Sbjct: 671 YDFVESLGEDGNFIAIWGSLLASCKAQGKMELAAWATEKVLNIEKQYGHAGYNVLLSQLF 730

Query: 630 SAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +A   W  A+++R  M  +GLRK    + I+V++
Sbjct: 731 AAEGNWSSADSLRKEMRLRGLRKEAGSTWIKVQS 764



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 165/536 (30%), Positives = 268/536 (50%), Gaps = 19/536 (3%)

Query: 64  RILFDEMSERS-SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNP--DNYTYPIVIKA 120
           R+L D +     + L N ++  Y        +L+++  +       P  D+YTY   + A
Sbjct: 50  RLLLDALPRPPPTLLCNVLLIAYVAGALPDHALRLYALLNHAARPAPRSDHYTYSCALTA 109

Query: 121 CTDLAWRKLGIALHGRVLITGFDM-DTFV-GNCLIAMYMNF-----GEVKAARKVFDAMW 173
           C      +LG ++H  +L     + DT V  N L+ +Y +      G V   R++FDAM 
Sbjct: 110 CARSRRLRLGRSVHAHLLRRARSLPDTAVLRNSLLNLYASCARHRRGGVDVVRRLFDAMP 169

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
           + +VVSWNTL   Y K     EAL +F  ML+ GV P   S V+V PA G   +     +
Sbjct: 170 KKNVVSWNTLFGWYVKTGRPDEALEMFARMLEDGVRPTPVSFVNVFPAAGS-GDPSWPFL 228

Query: 234 IHELVA--GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           ++ L+   G     ++   ++ + M+ +   V  AR+VFDR  ++++  W +MI GY  N
Sbjct: 229 LYGLLIKHGVEYVNDLFVVSSAIGMFSEISDVQSARMVFDRAGKKNIEVWNTMITGYVQN 288

Query: 292 GDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK-QNLECEVI 349
           G    A+ LF Q++  + V  + +T  S ++A S    ++ G+ LH + +K  +    VI
Sbjct: 289 GQFSQAMDLFIQILGSKEVPSDVVTFLSAVTAASQSQDVRLGQQLHGYLMKGMHSTLPVI 348

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           +  AL+ MY++C  V+ +F++F R  +K  V WN ++   V N    + + L  QM    
Sbjct: 349 LGNALVVMYSRCGNVQTAFELFDRLPEKDIVSWNTMITAFVQNDFDLEGLLLVYQMQKSG 408

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
             P+  TL ++L A +   DLQ     H YLIR+G +    + + LID+YSK G ++ A 
Sbjct: 409 FIPDTVTLTAVLSAASNTGDLQIGKQSHGYLIRHG-IEGEGLESYLIDMYSKSGRIDMAQ 467

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
           ++F      D+D V W+ +IAGY   G  E AV  F+ M+++GV+P  VT  S L AC  
Sbjct: 468 RVFDGYG-NDRDEVTWNAMIAGYTQSGQPEQAVLQFRAMIEAGVEPTSVTLASVLPACDP 526

Query: 530 -GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            GG +  G  + +F L  H   +     T +VD+  + G +  A ++   M  K T
Sbjct: 527 VGGGVCAGKQIHSFALR-HSLDTNVFVGTALVDMYSKCGEISAAENVFGGMTEKST 581


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 196/607 (32%), Positives = 318/607 (52%), Gaps = 39/607 (6%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G++   R LFD M ER++  +  ++  Y+Q     ++ ++F+ M R G   PD  T+  +
Sbjct: 92  GNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGT-EPDYVTFVTL 150

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +  C           +  +++  G+D    VGN L+  Y     +  A ++F  M     
Sbjct: 151 LSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEM----- 205

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
                                          E D  +  +VL A   L +I +G+ IH  
Sbjct: 206 ------------------------------PEIDSFTFAAVLCANIGLDDIVLGQQIHSF 235

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V       N+   NAL+D Y K  SV +AR +FD M E+D V++  +I+GYA +G  + A
Sbjct: 236 VIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYA 295

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
             LF+ +QF           ++LS  S+    + GR +HA TI    + E++V  +L+DM
Sbjct: 296 FDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDM 355

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAKC   + +  +F   + +  VPW A+++  V  G   + ++LF +M    V  + AT 
Sbjct: 356 YAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATF 415

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            SLL A A +A L     +H ++I+ GF+S V   + L+D+Y+KCGS++ A + F E+P 
Sbjct: 416 ASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP- 474

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            D++IV W+ +I+ Y  +G  E  +  FKEMV SG+QP+ V+F   L ACSH GL++EGL
Sbjct: 475 -DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGL 533

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             FN M + ++   R +HY  +VD+L R+GR +EA  L+  MP+ P   +W ++L AC I
Sbjct: 534 WHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRI 593

Query: 598 HGNVELGEVAAKWLFELEP-ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           H N EL   AA  LF +E   +   YV +S +Y+A  +W++   V   M ++G++K PA+
Sbjct: 594 HKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAY 653

Query: 657 SLIEVRN 663
           S +E+++
Sbjct: 654 SWVEIKH 660



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 111/265 (41%), Gaps = 40/265 (15%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLR-SSLVRAY---GHVSNVRILFDEMSERS 74
           L++  A+  S++  KQLH+FII SG +      S+L+  Y   G + +    F EM +R+
Sbjct: 418 LLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRN 477

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
              +N ++  YAQNG +  +LK F  M+ L    PD+ ++  V+ AC+           H
Sbjct: 478 IVSWNAMISAYAQNGEAEATLKSFKEMV-LSGLQPDSVSFLGVLSACS-----------H 525

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI-SGYFKNAYA 193
             ++  G     +  N +  +Y             D   EH     + L  SG F  A  
Sbjct: 526 SGLVEEGL----WHFNSMTQIYK-----------LDPRREHYASVVDMLCRSGRFNEA-- 568

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
            E L     M +  ++PD     SVL AC   K  E+ R   + +      ++ A +  +
Sbjct: 569 -EKL-----MAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNM 622

Query: 254 VDMYVKCGSVNEARLVFDRMSERDV 278
            ++Y   G       V   M +R V
Sbjct: 623 SNIYAAAGQWENVSKVHKAMRDRGV 647



 Score = 46.6 bits (109), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 137/398 (34%), Gaps = 109/398 (27%)

Query: 310 RPNSL----TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
           RPN+L    ++ SL S  S    L    ++ A  +K   + +       +  + K   + 
Sbjct: 5   RPNALQNLTSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELS 64

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHN---GLARK------------------------- 397
            + Q+F +   K TV  N +++G V +   G ARK                         
Sbjct: 65  QARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQ 124

Query: 398 ---AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTG 454
              A ELF QM     EP+  T  +LL          Q   +   +I+ G+ S + V   
Sbjct: 125 FKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNT 184

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDK--------------DIV--------------VWS 486
           L+D Y K   L+ A ++F E+P  D               DIV              VW+
Sbjct: 185 LVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWN 244

Query: 487 V------------------------------------IIAGYGMHGHGETAVSLFKEMVQ 510
           V                                    II+GY   G  + A  LF+E+  
Sbjct: 245 VFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQF 304

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY----TCIVDLLGRA 566
           +     +  F + L   S+    + G       +      + AD        +VD+  + 
Sbjct: 305 TAFDRKQFPFATMLSIASNTLDWEMGR-----QIHAQTIVTTADSEILVGNSLVDMYAKC 359

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
           G+ +EA ++I T     +   W A++ A V  G  E G
Sbjct: 360 GKFEEA-EMIFTNLTHRSAVPWTAMISAYVQKGFYEEG 396


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 200/602 (33%), Positives = 313/602 (51%), Gaps = 77/602 (12%)

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMN---FGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           H  +L      DT +   L++ Y N       + +  +   +   ++ S+++LI  + ++
Sbjct: 23  HALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARS 82

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG-GRLGKNIAA 249
            +    L  F  +    + PD   + S + +C  L+ ++ G+ +H   A  G L  +I A
Sbjct: 83  HHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVA 142

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA----------LNGDVRN--- 296
            ++L  MY+KC  + +AR +FDRM +RDVV W++MI GY+          L G++R+   
Sbjct: 143 -SSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGV 201

Query: 297 ----------------------ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
                                 A+G+F++M  +G  P+  T+  +L A   L  +  G  
Sbjct: 202 EPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQ 261

Query: 335 LHAWTIKQNLECEVIVETALIDMYAKCNLVK----------------------------- 365
           +H + IKQ L  +  V +A++DMY KC  VK                             
Sbjct: 262 VHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGM 321

Query: 366 --LSFQVFARTSKKK----TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
              + +VF +   +K     V W +I+A C  NG   +A+ELFR M    VEPN  T+ S
Sbjct: 322 VDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPS 381

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           L+PA   ++ L     IHC+ +R G    V V + LID+Y+KCG ++ A + F ++    
Sbjct: 382 LIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKM--SA 439

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
            ++V W+ ++ GY MHG  +  + +F  M+QSG +P+ VTFT  L AC+  GL +EG   
Sbjct: 440 LNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRC 499

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           +N M E H    + +HY C+V LL R G+L+EAY +I+ MP +P   VWGALL +C +H 
Sbjct: 500 YNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHN 559

Query: 600 NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           N+ LGE+AA+ LF LEP NPGNY+LLS +Y++   W +   +R+VM  KGLRK P +S I
Sbjct: 560 NLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWI 619

Query: 660 EV 661
           EV
Sbjct: 620 EV 621



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 171/598 (28%), Positives = 271/598 (45%), Gaps = 97/598 (16%)

Query: 24  AATKSIAGTKQLHAFIITSGPLF--THLRSSLVRAYGHVSNVRI------LFDEMSERSS 75
           ++T S++  +Q HA I+    LF  T L +SL+  Y +  ++        L   +   + 
Sbjct: 11  SSTASLSQARQAHALILRLN-LFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTL 69

Query: 76  FLYNTVMKMYAQNGASHDSLKMF--LGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           F +++++  +A++      L  F  L  LRL    PD +  P  IK+C  L     G  L
Sbjct: 70  FSFSSLIHAFARSHHFPHVLTTFSHLHPLRL---IPDAFLLPSAIKSCASLRALDPGQQL 126

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK---- 189
           H     +GF  D+ V + L  MY+    +  ARK+FD M +  VV W+ +I+GY +    
Sbjct: 127 HAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLV 186

Query: 190 -------------------------------NAYAKEALVVFDWMLKSGVEPDCASVVSV 218
                                          N +  EA+ +F  ML  G  PD ++V  V
Sbjct: 187 EEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCV 246

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD- 277
           LPA G L+++ +G  +H  V    LG +    +A++DMY KCG V E   VFD + E + 
Sbjct: 247 LPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEI 306

Query: 278 ----------------------------------VVTWTSMINGYALNGDVRNALGLFQL 303
                                             VVTWTS+I   + NG    AL LF+ 
Sbjct: 307 GSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRD 366

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           MQ  GV PN++TI SL+ AC ++  L  G+ +H +++++ +  +V V +ALIDMYAKC  
Sbjct: 367 MQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGR 426

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           ++L+ + F + S    V WNA++ G   +G A++ +E+F  ML    +P+  T   +L A
Sbjct: 427 IQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSA 486

Query: 424 YAILADLQQAMNIHCY---LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
            A     ++     CY      +G    +E    L+ + S+ G LE A+ I  E+P  + 
Sbjct: 487 CAQNGLTEEGWR--CYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPF-EP 543

Query: 481 DIVVWSVIIAGYGMHGH---GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
           D  VW  +++   +H +   GE A    K        P      S ++A    GL DE
Sbjct: 544 DACVWGALLSSCRVHNNLSLGEIAAE--KLFFLEPTNPGNYILLSNIYASK--GLWDE 597


>gi|302763107|ref|XP_002964975.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
 gi|300167208|gb|EFJ33813.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
          Length = 703

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 202/587 (34%), Positives = 332/587 (56%), Gaps = 14/587 (2%)

Query: 49  LRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           ++++LV  Y   S +   R++FD++  +S   +N ++   A+ G +  +L++F  M    
Sbjct: 124 VQNALVSMYARCSRLDVARVVFDKIESKSVVSWNAMIAACARQGEAEQALQLFKRM---- 179

Query: 106 EYNPDNYTYPIVIKACTDLA-WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA 164
           E  P+  T+  V  AC+ L   R++G  +H R+  +  + +  V   ++ MY  FG+V  
Sbjct: 180 ELEPNEVTFASVFNACSLLPDHREVGKRIHDRIRGSHLEANVTVATAIVTMYGKFGKVGM 239

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
           AR+VF+ +   +VVSWN ++  Y +N   +EAL V+  M+   V+ D  +VV  L     
Sbjct: 240 ARQVFNGIQHKNVVSWNAMLGAYTQNNLDREALEVYHEMVAQKVQRDEVTVVIALGISAS 299

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           L+ +++G  +HEL        NI   NAL+ MY KC  ++ AR VF ++   DVV+WT++
Sbjct: 300 LRLLKLGIELHELSVAHGYDSNIKVQNALISMYGKCNELDAARRVFSKVRAHDVVSWTAL 359

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI-KQN 343
           I  Y  +G  R AL L++ M+ EG+ P+ +T  S+LSACS+   L+ G++LHA  + +++
Sbjct: 360 IVAYTQHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTSDLELGQALHARLLARKD 419

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT-VPWNAILAGCVHNGLARKAVELF 402
              + ++  ALI+MY KC  + LS ++F      K  V WNA++      G +R AV+L+
Sbjct: 420 GFSDGVLVAALINMYVKCGRLDLSSEIFQSCKDTKAVVVWNAMITAYEQEGYSRAAVDLY 479

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS-TGLIDIYSK 461
             M    ++P+++TL+S+L A A L DL++   +H  +I     S   V    LI +Y+ 
Sbjct: 480 DMMKQRGLDPDESTLSSILSACAELQDLEKGEQLHVEIIASRDCSQNPVVLNALISMYAS 539

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
           CG +  A  +F    +K++D+V W+++I+ Y   G    A+ L++ M+  GVQP E TF 
Sbjct: 540 CGEIREAKAVFKR--MKNRDVVSWTILISAYVQGGDARRALRLYRRMLVEGVQPTEPTFL 597

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581
               AC H GL+DE    F  M+E+  T +  DHY+C+V +L RAG+L+EA DL+ +MP 
Sbjct: 598 CVFLACGHAGLVDECKWYFQSMIEDRITPT-FDHYSCVVTVLSRAGKLEEAEDLLHSMPF 656

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
            P    W +LLGAC  HG+++    AA    EL+ ++   YVLLS +
Sbjct: 657 NPGSVGWTSLLGACRTHGDLKRARRAADEAMELDRQDSAPYVLLSNV 703



 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 154/466 (33%), Positives = 260/466 (55%), Gaps = 6/466 (1%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  +H  ++ +G   D F+G+ L+ MY   G V  A +VF ++   S+ SWN +I+ + K
Sbjct: 5   GRRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIAAFAK 64

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N + ++A+ +F  M  +G++PD A++ SVL AC  L+++E G+ IH       L  +I  
Sbjct: 65  NRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGKKIHSRALARGLSSSIIV 124

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
            NALV MY +C  ++ AR+VFD++  + VV+W +MI   A  G+   AL LF+ M+ E  
Sbjct: 125 QNALVSMYARCSRLDVARVVFDKIESKSVVSWNAMIAACARQGEAEQALQLFKRMELE-- 182

Query: 310 RPNSLTIGSLLSACSSL-YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
            PN +T  S+ +ACS L  + + G+ +H      +LE  V V TA++ MY K   V ++ 
Sbjct: 183 -PNEVTFASVFNACSLLPDHREVGKRIHDRIRGSHLEANVTVATAIVTMYGKFGKVGMAR 241

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           QVF     K  V WNA+L     N L R+A+E++ +M+ + V+ ++ T+   L   A L 
Sbjct: 242 QVFNGIQHKNVVSWNAMLGAYTQNNLDREALEVYHEMVAQKVQRDEVTVVIALGISASLR 301

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            L+  + +H   + +G+ S ++V   LI +Y KC  L++A ++FS+  ++  D+V W+ +
Sbjct: 302 LLKLGIELHELSVAHGYDSNIKVQNALISMYGKCNELDAARRVFSK--VRAHDVVSWTAL 359

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           I  Y  HG    A+ L+K+M   G++P++VTFTS L ACS+   L+ G  L   +L    
Sbjct: 360 IVAYTQHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTSDLELGQALHARLLARKD 419

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
             S       ++++  + GRLD + ++ ++        VW A++ A
Sbjct: 420 GFSDGVLVAALINMYVKCGRLDLSSEIFQSCKDTKAVVVWNAMITA 465



 Score =  271 bits (694), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 179/576 (31%), Positives = 291/576 (50%), Gaps = 16/576 (2%)

Query: 33  KQLHAFIITSGPLFT-HLRSSLVRAYGHVSNVR---ILFDEMSERSSFLYNTVMKMYAQN 88
           +++HA I+ SG      L   L++ YG   +V     +F  +  RS F +N ++  +A+N
Sbjct: 6   RRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIAAFAKN 65

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
                +++MF  M   G   PD+ T   V+ AC+ L   + G  +H R L  G      V
Sbjct: 66  RHGRKAIEMFRSMDSAG-IKPDSATLSSVLGACSSLRDLEEGKKIHSRALARGLSSSIIV 124

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L++MY     +  AR VFD +   SVVSWN +I+   +   A++AL +F  M    +
Sbjct: 125 QNALVSMYARCSRLDVARVVFDKIESKSVVSWNAMIAACARQGEAEQALQLFKRM---EL 181

Query: 209 EPDCASVVSVLPACGYLKE-IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           EP+  +  SV  AC  L +  E+G+ IH+ + G  L  N+    A+V MY K G V  AR
Sbjct: 182 EPNEVTFASVFNACSLLPDHREVGKRIHDRIRGSHLEANVTVATAIVTMYGKFGKVGMAR 241

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VF+ +  ++VV+W +M+  Y  N   R AL ++  M  + V+ + +T+   L   +SL 
Sbjct: 242 QVFNGIQHKNVVSWNAMLGAYTQNNLDREALEVYHEMVAQKVQRDEVTVVIALGISASLR 301

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            LK G  LH  ++    +  + V+ ALI MY KCN +  + +VF++      V W A++ 
Sbjct: 302 LLKLGIELHELSVAHGYDSNIKVQNALISMYGKCNELDAARRVFSKVRAHDVVSWTALIV 361

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI--RYGF 445
               +G  R+A+EL++QM  E +EP+  T  S+L A +  +DL+    +H  L+  + GF
Sbjct: 362 AYTQHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTSDLELGQALHARLLARKDGF 421

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD-KDIVVWSVIIAGYGMHGHGETAVSL 504
              V V+  LI++Y KCG L+ + +IF     KD K +VVW+ +I  Y   G+   AV L
Sbjct: 422 SDGVLVA-ALINMYVKCGRLDLSSEIFQ--SCKDTKAVVVWNAMITAYEQEGYSRAAVDL 478

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           +  M Q G+ P+E T +S L AC+    L++G  L   ++ +            ++ +  
Sbjct: 479 YDMMKQRGLDPDESTLSSILSACAELQDLEKGEQLHVEIIASRDCSQNPVVLNALISMYA 538

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             G + EA  + + M  +     W  L+ A V  G+
Sbjct: 539 SCGEIREAKAVFKRMKNRDV-VSWTILISAYVQGGD 573



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 209/412 (50%), Gaps = 39/412 (9%)

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +  GR IH  +    L  +    + L+ MY KCGSV++A  VF  +  R + +W  +I  
Sbjct: 2   LPQGRRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIAA 61

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           +A N   R A+ +F+ M   G++P+S T+ S+L ACSSL  L+ G+ +H+  + + L   
Sbjct: 62  FAKNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGKKIHSRALARGLSSS 121

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           +IV+ AL+ MYA+C+ + ++  VF +   K  V WNA++A C   G A +A++LF++M  
Sbjct: 122 IIVQNALVSMYARCSRLDVARVVFDKIESKSVVSWNAMIAACARQGEAEQALQLFKRM-- 179

Query: 408 EVVEPNDATLNSLLPAYAILADLQQ-AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
             +EPN+ T  S+  A ++L D ++    IH  +      + V V+T ++ +Y K G + 
Sbjct: 180 -ELEPNEVTFASVFNACSLLPDHREVGKRIHDRIRGSHLEANVTVATAIVTMYGKFGKVG 238

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
            A ++F+   I+ K++V W+ ++  Y  +     A+ ++ EMV   VQ +EVT   AL  
Sbjct: 239 MARQVFN--GIQHKNVVSWNAMLGAYTQNNLDREALEVYHEMVAQKVQRDEVTVVIALGI 296

Query: 527 CSHGGLLDEGLDLF---------------NFMLENHQTCSRAD---------------HY 556
            +   LL  G++L                N ++  +  C+  D                +
Sbjct: 297 SASLRLLKLGIELHELSVAHGYDSNIKVQNALISMYGKCNELDAARRVFSKVRAHDVVSW 356

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMP---LKPTHAVWGALLGACVIHGNVELGE 605
           T ++    + GR  EA +L + M    ++P    + ++L AC    ++ELG+
Sbjct: 357 TALIVAYTQHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTSDLELGQ 408


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 184/569 (32%), Positives = 318/569 (55%), Gaps = 38/569 (6%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYM---NFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           +H +++ TG     +  + LI   +   +F  +  A  VF+ + E +++ WNT+  G+  
Sbjct: 9   IHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 68

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE------------- 236
           ++    AL ++  M+  G+ P+  +   +L +C   K  + G+ IH              
Sbjct: 69  SSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYV 128

Query: 237 -------LVAGGRLG-----------KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
                   V  GRL            +++ ++ AL+  Y   G +  A+ +FD +  +DV
Sbjct: 129 HTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDV 188

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           V+W +MI+GYA  G+ + AL LF+ M    VRP+  T+ +++SAC+    ++ GR +H+W
Sbjct: 189 VSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSW 248

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
                    + +  ALID+Y+KC  ++ +  +F     K  + WN ++ G  H  L ++A
Sbjct: 249 IDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEA 308

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY--GFLSVVEVSTGLI 456
           + LF++ML     PND T+ S+LPA A L  +     IH Y+ +   G  +   + T LI
Sbjct: 309 LLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLI 368

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
           D+Y+KCG +E+AH++F+ I    K +  W+ +I G+ MHG  + +  +F  M ++G++P+
Sbjct: 369 DMYAKCGDIEAAHQVFNSI--LHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPD 426

Query: 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
           ++TF   L ACSH G+LD G  +F  M ++++   + +HY C++DLLG +G   EA ++I
Sbjct: 427 DITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMI 486

Query: 577 RTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWK 636
            TM ++P   +W +LL AC +HGNVELGE  A+ L ++EPENPG+YVLLS +Y+   RW 
Sbjct: 487 NTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWN 546

Query: 637 DAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           +  N R ++++KG++K P  S IE+ +++
Sbjct: 547 EVANTRALLNDKGMKKVPGCSSIEIDSVV 575



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 147/484 (30%), Positives = 250/484 (51%), Gaps = 38/484 (7%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F+ + E +  ++NT+ + +A +     +LK+++ M+ LG   P++YT+P ++K+C    
Sbjct: 47  VFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLL-PNSYTFPFLLKSCAKSK 105

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD--------------- 170
             K G  +HG VL  G D+D +V   LI+MY+  G ++ A KVFD               
Sbjct: 106 AFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIK 165

Query: 171 ------------AMWEH----SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
                        M++      VVSWN +ISGY +    KEAL +F  M+K+ V PD ++
Sbjct: 166 GYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDEST 225

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           +V+V+ AC     IE+GR +H  +     G N+   NAL+D+Y KCG +  A  +F+ + 
Sbjct: 226 MVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLP 285

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
            +DV++W ++I GY      + AL LFQ M   G  PN +T+ S+L AC+ L  +  GR 
Sbjct: 286 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 345

Query: 335 LHAWTIK--QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           +H +  K  + +     + T+LIDMYAKC  ++ + QVF     K    WNA++ G   +
Sbjct: 346 IHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMH 405

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEV 451
           G A  + ++F +M    +EP+D T   LL A +    L    +I   + + Y     +E 
Sbjct: 406 GRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEH 465

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
              +ID+    G  + A ++ + + + + D V+W  ++    MHG+ E   S  + +++ 
Sbjct: 466 YGCMIDLLGHSGLFKEAEEMINTMEM-EPDGVIWCSLLKACKMHGNVELGESFAQNLIK- 523

Query: 512 GVQP 515
            ++P
Sbjct: 524 -IEP 526



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/415 (29%), Positives = 206/415 (49%), Gaps = 11/415 (2%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++L++ Y   G++ N + +FDE+  +    +N ++  YA+ G   ++L++F  M++    
Sbjct: 161 TALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN-V 219

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PD  T   V+ AC      +LG  +H  +   GF  +  + N LI +Y   GE++ A  
Sbjct: 220 RPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACG 279

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F+ +    V+SWNTLI GY      KEAL++F  ML+SG  P+  +++S+LPAC +L  
Sbjct: 280 LFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 339

Query: 228 IEMGRMIHELVAGGRLGKNIAA--WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           I++GR IH  +     G   A+    +L+DMY KCG +  A  VF+ +  + + +W +MI
Sbjct: 340 IDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMI 399

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
            G+A++G    +  +F  M+  G+ P+ +T   LLSACS    L  GR +   ++ Q+ +
Sbjct: 400 FGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFR-SMTQDYK 458

Query: 346 CEVIVE--TALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELF 402
               +E    +ID+     L K + ++      +   V W ++L  C  +G      E F
Sbjct: 459 MTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELG-ESF 517

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
            Q L+++   N  +   L   YA      +  N    L   G   V   S+  ID
Sbjct: 518 AQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKKVPGCSSIEID 572


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 204/660 (30%), Positives = 335/660 (50%), Gaps = 11/660 (1%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLR--SSLVRAYGH---VSNV 63
           L +TT  V  L++       +A   Q+HA  + +G L T +R  S+LV  YG    + + 
Sbjct: 149 LDRTTLAV--LLKSCGGLDDLALGVQIHALAVKTG-LETDVRAGSALVDMYGKCRSLDDA 205

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
              F  M ER+S  +   +    QN      +++F+ M RLG        Y    ++C  
Sbjct: 206 LRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLG-LGVSQPAYASAFRSCAA 264

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
           +        LH   +   F  D  VG  ++ +Y   G +  AR+ F  +  H+V + N +
Sbjct: 265 MPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAM 324

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243
           + G  +     EA+ +F +M +SGV  D  S+  V  AC  +K    G  +H L      
Sbjct: 325 MVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGF 384

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
             ++   NA++D+Y KC ++ EA LVF  M +RD V+W ++I     N    + +     
Sbjct: 385 DVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNE 444

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M   G+ P+  T GS+L AC+ L  L+ G  +H   IK  L  +  V + ++DMY KC  
Sbjct: 445 MLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGA 504

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           +  + ++  R   ++ V WN+I++G      + +A   F +ML   V+P+  T  ++L  
Sbjct: 505 ITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDT 564

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
            A LA ++    IH  +I+   L    +S+ L+D+Y+KCG++  +  +F +   +  D V
Sbjct: 565 CANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEK--ARKLDFV 622

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ +I GY +HG G  A+ +F+ M ++ V PN  TF + L ACSH GLLD+G   F+ M
Sbjct: 623 SWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLM 682

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
              ++   + +H+ C+VD+LGR+    EA + IR+MP++    VW  LL  C I  +VE+
Sbjct: 683 TSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQDVEV 742

Query: 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            E AA  +  L+P++   Y+LLS +Y+   +W D    R +M +  LRK P  S IEV++
Sbjct: 743 AETAASNVLRLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQGRLRKEPGCSWIEVQS 802



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 154/594 (25%), Positives = 274/594 (46%), Gaps = 15/594 (2%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRI---LFD 68
           TT +   L+Q YA      GT   H    T     T   ++++ AY H  +      LF 
Sbjct: 53  TTFVSNCLLQMYA---RCGGTAHAHGVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFG 109

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
            M +     +NT++  Y Q+G   +S+ + + M R G    D  T  +++K+C  L    
Sbjct: 110 TMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRG-VALDRTTLAVLLKSCGGLDDLA 168

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
           LG+ +H   + TG + D   G+ L+ MY     +  A + F  M E + VSW   I+G  
Sbjct: 169 LGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCV 228

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           +N      + +F  M + G+     +  S   +C  +  +   R +H          +  
Sbjct: 229 QNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRV 288

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
              A+VD+Y K G++ +AR  F  +   +V T  +M+ G    G    A+ LFQ M   G
Sbjct: 289 VGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSG 348

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           V  + +++  + SAC+ +    +G  +H   +K   + +V V  A++D+Y KC  +  ++
Sbjct: 349 VGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAY 408

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
            VF    ++ +V WNAI+A    N      +    +ML   +EP+D T  S+L A A L 
Sbjct: 409 LVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQ 468

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            L+  + +H   I+ G      VS+ ++D+Y KCG++  A K+     I  +++V W+ I
Sbjct: 469 SLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKLHDR--IGGQELVSWNSI 526

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           I+G+ +    E A   F EM+  GV+P+  T+ + L  C++   ++ G  +   +++   
Sbjct: 527 ISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEM 586

Query: 549 TCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
                D Y  + +VD+  + G + ++  L+     K     W A++    +HG 
Sbjct: 587 L---GDEYISSTLVDMYAKCGNMPDSL-LMFEKARKLDFVSWNAMICGYALHGQ 636



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 155/552 (28%), Positives = 247/552 (44%), Gaps = 90/552 (16%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM-------W--------- 173
           G A H R+L++GF   TFV NCL+ MY   G    A  VFD M       W         
Sbjct: 38  GQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDTVSWNTMLTAYVH 97

Query: 174 ---------------EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSV 218
                          +  VVSWNTLISGY ++   + ++ +   M + GV  D  ++  +
Sbjct: 98  AGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVL 157

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
           L +CG L ++ +G  IH L     L  ++ A +ALVDMY KC S+++A   F  M ER+ 
Sbjct: 158 LKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNS 217

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           V+W + I G   N      + LF  MQ  G+  +     S   +C+++  L   R LHA 
Sbjct: 218 VSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAH 277

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
            IK     + +V TA++D+YAK   +  + + F           NA++ G V  GL  +A
Sbjct: 278 AIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEA 337

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
           ++LF+ M    V  +  +L+ +  A A +    Q + +HC  ++ GF   V V   ++D+
Sbjct: 338 MQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDL 397

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           Y KC +L  A+ +F E  ++ +D V W+ IIA    +   E  ++   EM++SG++P++ 
Sbjct: 398 YGKCKALVEAYLVFQE--MEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDF 455

Query: 519 TFTSALHACS-----------HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           T+ S L AC+           HG  +  GL L  F+             + +VD+  + G
Sbjct: 456 TYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFV------------SSTVVDMYCKCG 503

Query: 568 RLDEAYDL----------------------------------IRTMPLKPTHAVWGALLG 593
            + EA  L                                  +  M +KP H  +  +L 
Sbjct: 504 AITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLD 563

Query: 594 ACVIHGNVELGE 605
            C     +ELG+
Sbjct: 564 TCANLATIELGK 575



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 117/292 (40%), Gaps = 34/292 (11%)

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           L A +    L  G++ HA  +         V   L+ MYA+C     +  VF     + T
Sbjct: 26  LCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDT 85

Query: 380 VPWNAILAGCVH-------------------------------NGLARKAVELFRQMLVE 408
           V WN +L   VH                               +G+ R +V L  +M   
Sbjct: 86  VSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRR 145

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            V  +  TL  LL +   L DL   + IH   ++ G  + V   + L+D+Y KC SL+ A
Sbjct: 146 GVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDA 205

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            + F    + +++ V W   IAG   +      + LF +M + G+  ++  + SA  +C+
Sbjct: 206 LRFFH--GMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCA 263

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
               L     L    ++N  +  R    T IVD+  +AG L +A      +P
Sbjct: 264 AMPCLSTARQLHAHAIKNVFSSDRVVG-TAIVDVYAKAGNLVDARRAFIGLP 314


>gi|414888053|tpg|DAA64067.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 754

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 217/626 (34%), Positives = 319/626 (50%), Gaps = 19/626 (3%)

Query: 35  LHAFIITSG-PLFTHLRSSLVRAYGHVSNVRILFDEM---SERSSFLYNTVMKMYAQNGA 90
           LHA  + SG   F  + +SL   Y   ++             R +  YNT++        
Sbjct: 80  LHALAVISGLAAFAPVTNSLAARYAKGNSFAAAARVFAAAPSRDTSSYNTILSATPD--- 136

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             D+L     MLR G+  PD  T+ + +         +L   LH  V   G   D FVGN
Sbjct: 137 PDDALAFAARMLRAGDVRPDAITFTVTLSLAAGRGEGRLVRQLHALVSRAGIAADVFVGN 196

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK-EALVVFDWMLK-SGV 208
            L+  Y     + AARKVF+ M    +VSWN L+ G  ++     E + VF  MLK  GV
Sbjct: 197 ALVTAYARGASLDAARKVFEEMPARDLVSWNALVCGLAQDGECPAEVIRVFLRMLKHGGV 256

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            PD  SV SV+ ACG   ++E+GR IH       +  +++  N LV MY KCG+   AR 
Sbjct: 257 RPDRISVCSVISACGGEGKLELGRQIHGFAVKLGIEGHVSIANVLVAMYYKCGTPGCARR 316

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +F+ M ERDVV+WT++     ++ D  +A+ LF  M  +GV PN +T  ++LSA      
Sbjct: 317 LFEFMGERDVVSWTTV-----MSMDREDAVSLFNGMMRDGVAPNEVTFVAILSAMPGHCP 371

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
            + G+ +HA  IK  L  +     + I MYAK   +  +  +F      + + WNA+++G
Sbjct: 372 AREGQMVHAVCIKTGLSDKPAAANSFITMYAKLRRMDDAKMIFGLMPHPEVIAWNALISG 431

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN--IHCYLIRYGFL 446
              N + + A+E F  M V++ +P++ T  S+L A   +  +  A     HC  ++ G  
Sbjct: 432 YAQNEMCQDALEAFLSM-VKITKPSETTFASILSAVTAVETVSMAYGQMYHCQTLKLGLG 490

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           +   VS  LID+Y+K GSLE + K F E     + ++ W+ II+    HG+ +  VSLF 
Sbjct: 491 ASEYVSGALIDLYAKRGSLEESWKAFGET--VHRSLIAWTAIISANSKHGNYDGVVSLFN 548

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           +M +SGV P+ V   S L AC + G    G ++F  M   H      +HY C+VD+LGRA
Sbjct: 549 DMARSGVTPDGVVLLSVLTACRYSGFASLGREIFESMATKHGAELWPEHYACVVDMLGRA 608

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           GRL+EA +L+  MP  P+ +   +LLGAC IHGN ++GE  A  L E EP   G YVLLS
Sbjct: 609 GRLEEAEELMLQMPSGPSVSAMQSLLGACRIHGNTDVGERVAGVLLETEPTESGAYVLLS 668

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRK 652
            +Y+    W     VR  M   G++K
Sbjct: 669 NIYAEKGDWGAVARVRRKMRGMGVKK 694



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 225/480 (46%), Gaps = 26/480 (5%)

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
           ALH   +I+G      V N L A Y       AA +VF A       S+NT++S      
Sbjct: 79  ALHALAVISGLAAFAPVTNSLAARYAKGNSFAAAARVFAAAPSRDTSSYNTILSA---TP 135

Query: 192 YAKEALVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
              +AL     ML++G V PD  +    L       E  + R +H LV+   +  ++   
Sbjct: 136 DPDDALAFAARMLRAGDVRPDAITFTVTLSLAAGRGEGRLVRQLHALVSRAGIAADVFVG 195

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL--GLFQLMQFEG 308
           NALV  Y +  S++ AR VF+ M  RD+V+W +++ G A +G+    +     ++++  G
Sbjct: 196 NALVTAYARGASLDAARKVFEEMPARDLVSWNALVCGLAQDGECPAEVIRVFLRMLKHGG 255

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           VRP+ +++ S++SAC     L+ GR +H + +K  +E  V +   L+ MY KC     + 
Sbjct: 256 VRPDRISVCSVISACGGEGKLELGRQIHGFAVKLGIEGHVSIANVLVAMYYKCGTPGCAR 315

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARK-AVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
           ++F    ++  V W  +++      + R+ AV LF  M+ + V PN+ T  ++L A    
Sbjct: 316 RLFEFMGERDVVSWTTVMS------MDREDAVSLFNGMMRDGVAPNEVTFVAILSAMPGH 369

Query: 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
              ++   +H   I+ G       +   I +Y+K   ++ A  IF  +P    +++ W+ 
Sbjct: 370 CPAREGQMVHAVCIKTGLSDKPAAANSFITMYAKLRRMDDAKMIFGLMP--HPEVIAWNA 427

Query: 488 IIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH 547
           +I+GY  +   + A+  F  MV+   +P+E TF S L A +      E + +    + + 
Sbjct: 428 LISGYAQNEMCQDALEAFLSMVKI-TKPSETTFASILSAVT----AVETVSMAYGQMYHC 482

Query: 548 QTCS---RADHYT--CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           QT      A  Y    ++DL  + G L+E++       +  +   W A++ A   HGN +
Sbjct: 483 QTLKLGLGASEYVSGALIDLYAKRGSLEESWKAFGET-VHRSLIAWTAIISANSKHGNYD 541


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 198/656 (30%), Positives = 343/656 (52%), Gaps = 8/656 (1%)

Query: 13  THLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSS-LVRAY---GHVSNVRILFD 68
           T   + L+Q+ ++ K++   +++H  +   G    +L    L++ Y   G V   + +F+
Sbjct: 5   TAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFE 64

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
            +  +  F +  ++ +Y Q G    +L MF  M +  +  P   TY  ++ AC      K
Sbjct: 65  ILERKDVFAWTRMIGIYCQQGDYDRALGMFYQM-QEEDVMPTKVTYVAILNACASTESLK 123

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
            G+ +HG++L  GF+ D FVG  LI MY   G V+ A   F  +    VVSW  +I+   
Sbjct: 124 DGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACV 183

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           ++     A  ++  M   GV P+  ++ +V  A G    +  G+ I+ LV+   +  ++ 
Sbjct: 184 QHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVR 243

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             N+ ++M+   G + +AR +F+ M +RDVVTW  +I  Y  N +   A+ LF  +Q +G
Sbjct: 244 VMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDG 303

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           ++ N +T   +L+  +SL  L +G+ +H    +   + +V+V TAL+ +Y +C     ++
Sbjct: 304 IKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAW 363

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           ++F     K  + W  +      NG  ++A++LF++M +E   P  ATL ++L   A LA
Sbjct: 364 KIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLA 423

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            LQ+   IH ++I  GF   + V T LI++Y KCG +  A  +F ++    +DI+VW+ +
Sbjct: 424 ALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMA--KRDILVWNSM 481

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           +  Y  HG+ +  + LF +M   G + + V+F S L A SH G + +G   F  ML++  
Sbjct: 482 LGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFS 541

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP-LKPTHAVWGALLGACVIHGNVELGEVA 607
                + Y C+VDLLGRAGR+ EA D++  +    P   +W  LLGAC  H   +  + A
Sbjct: 542 ITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAA 601

Query: 608 AKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           A+ + E +P + G YV+LS +Y+A   W     +R +M  +G++K P  S IE+ N
Sbjct: 602 AEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILN 657



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 138/493 (27%), Positives = 241/493 (48%), Gaps = 4/493 (0%)

Query: 107 YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR 166
           + PD   +  +++ C+       G  +H  V   GF+ +  V   LI MY   G V  A+
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           +VF+ +    V +W  +I  Y +      AL +F  M +  V P   + V++L AC   +
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
            ++ G  IH  +       ++    AL++MY KCGSV  A   F R+  RDVV+WT+MI 
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 180

Query: 287 GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346
               +     A  L++ MQ +GV PN +T+ ++ +A    +YL  G+ +++    + +E 
Sbjct: 181 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMES 240

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
           +V V  + ++M+    L+  + ++F     +  V WN ++   V N    +AV LF ++ 
Sbjct: 241 DVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQ 300

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
            + ++ ND T   +L  Y  L  L +   IH  +   G+   V V+T L+ +Y +C +  
Sbjct: 301 QDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPG 360

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
            A KIF  + +  KD++ W+V+   Y  +G  + A+ LF+EM   G +P   T  + L  
Sbjct: 361 QAWKIF--VDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDT 418

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           C+H   L +G  + + ++EN          T ++++ G+ G++ EA  +   M  K    
Sbjct: 419 CAHLAALQKGRQIHSHIIENGFRMEMVVE-TALINMYGKCGKMAEARSVFEKMA-KRDIL 476

Query: 587 VWGALLGACVIHG 599
           VW ++LGA   HG
Sbjct: 477 VWNSMLGAYAQHG 489


>gi|147834193|emb|CAN75306.1| hypothetical protein VITISV_040403 [Vitis vinifera]
          Length = 826

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 195/563 (34%), Positives = 306/563 (54%), Gaps = 4/563 (0%)

Query: 101 MLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG 160
           M+ + E  P++ T   VI+A + L    +   + G V+  GF+ +  V   LI  Y ++ 
Sbjct: 79  MMLMTEQRPNHVTVLSVIRAISGLGLEDMMRVICGSVIKLGFESEVSVATALIGFYSDY- 137

Query: 161 EVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLP 220
           ++    K+F+      +V W+ ++S   K+    EA  +F  M   GVEP+  S+VS+LP
Sbjct: 138 DMGIVWKIFNQTPIKDLVLWSAMVSACVKSGQYGEAFEIFRAMQYDGVEPNHVSIVSILP 197

Query: 221 ACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT 280
           AC  +  +  G+ IH               N+LVDMY KC +   + LVFD++ E+D+++
Sbjct: 198 ACANVGALLFGKEIHGFSIKKMFHPLTNVHNSLVDMYAKCRNFKASMLVFDQILEKDLIS 257

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           WT++I G   N   R A   F  MQF     +   +  L+ A       K G + H + +
Sbjct: 258 WTTIIRGCIENDCPREAFKAFSRMQFSCFGADETIVQDLIVAIIQADEHKFGIAFHGFLL 317

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
           K  L   V + TAL+ MYAK   ++ +  VF + +KK  + W+A+++   H+     A+E
Sbjct: 318 KNGLLAFVSIGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMISVHAHSRHPYNALE 377

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
            F+QM      PN+ T  SLL A +++   +   +I  +  + G+LS   +S+ LID+Y 
Sbjct: 378 TFKQMQSTDERPNEITFVSLLQACSLIGAQELGESIQAHATKAGYLSNAFLSSALIDLYC 437

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           K G +     IF+EIP KD  +V WS +I GYG++G G+ A+  F  M+  GV+PNEV F
Sbjct: 438 KFGRINQGRAIFNEIPTKD--LVCWSSMINGYGLNGCGDEALETFSNMLACGVKPNEVVF 495

Query: 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
            S L ACSH GL  EG   F+ M + +    +  HY C+VDL+ R G ++ A   +  MP
Sbjct: 496 ISVLSACSHCGLEHEGWSCFSSMEQKYGIIPKLPHYACMVDLISRRGNIEGALQFVNKMP 555

Query: 581 LKPTHAVWGALLGAC-VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAE 639
           ++P   +WGALL  C   HG++E+ E+ A+ L  L+P+N   YV+LS LY+   RW D E
Sbjct: 556 MEPDKRIWGALLAGCRSTHGSIEIAELVAERLIGLDPQNTSYYVILSNLYAEQGRWGDVE 615

Query: 640 NVRDVMDEKGLRKAPAHSLIEVR 662
            +R ++DEKGL+K   +S+IE +
Sbjct: 616 RLRKLVDEKGLKKEMGYSMIEAQ 638



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 217/428 (50%), Gaps = 13/428 (3%)

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
           +V+SW + IS   K   ++ A+ +F  ML +   P+  +V+SV+ A   L   +M R+I 
Sbjct: 53  NVISWTSKISSLVKQNQSELAVGLFKMMLMTEQRPNHVTVLSVIRAISGLGLEDMMRVIC 112

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
             V        ++   AL+  Y     +     +F++   +D+V W++M++    +G   
Sbjct: 113 GSVIKLGFESEVSVATALIGFYSDY-DMGIVWKIFNQTPIKDLVLWSAMVSACVKSGQYG 171

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            A  +F+ MQ++GV PN ++I S+L AC+++  L  G+ +H ++IK+       V  +L+
Sbjct: 172 EAFEIFRAMQYDGVEPNHVSIVSILPACANVGALLFGKEIHGFSIKKMFHPLTNVHNSLV 231

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           DMYAKC   K S  VF +  +K  + W  I+ GC+ N   R+A + F +M       ++ 
Sbjct: 232 DMYAKCRNFKASMLVFDQILEKDLISWTTIIRGCIENDCPREAFKAFSRMQFSCFGADET 291

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
            +  L+ A     + +  +  H +L++ G L+ V + T L+ +Y+K G LESA  +F + 
Sbjct: 292 IVQDLIVAIIQADEHKFGIAFHGFLLKNGLLAFVSIGTALLQMYAKFGELESAIIVFDQ- 350

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
            +  KD + WS +I+ +    H   A+  FK+M  +  +PNE+TF S L ACS  G  + 
Sbjct: 351 -LNKKDYISWSAMISVHAHSRHPYNALETFKQMQSTDERPNEITFVSLLQACSLIGAQEL 409

Query: 536 GLDLFNFMLENHQT----CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
           G       ++ H T     S A   + ++DL  + GR+++   +   +P K     W ++
Sbjct: 410 GES-----IQAHATKAGYLSNAFLSSALIDLYCKFGRINQGRAIFNEIPTKDL-VCWSSM 463

Query: 592 LGACVIHG 599
           +    ++G
Sbjct: 464 INGYGLNG 471



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/466 (25%), Positives = 222/466 (47%), Gaps = 24/466 (5%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F++   +   L++ ++    ++G   ++ ++F  M   G   P++ +   ++ AC ++ 
Sbjct: 145 IFNQTPIKDLVLWSAMVSACVKSGQYGEAFEIFRAMQYDG-VEPNHVSIVSILPACANVG 203

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
               G  +HG  +   F   T V N L+ MY      KA+  VFD + E  ++SW T+I 
Sbjct: 204 ALLFGKEIHGFSIKKMFHPLTNVHNSLVDMYAKCRNFKASMLVFDQILEKDLISWTTIIR 263

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           G  +N   +EA   F  M  S    D   V  ++ A     E + G   H  +    L  
Sbjct: 264 GCIENDCPREAFKAFSRMQFSCFGADETIVQDLIVAIIQADEHKFGIAFHGFLLKNGLLA 323

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
            ++   AL+ MY K G +  A +VFD+++++D ++W++MI+ +A +    NAL  F+ MQ
Sbjct: 324 FVSIGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMISVHAHSRHPYNALETFKQMQ 383

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
               RPN +T  SLL ACS +   + G S+ A   K        + +ALID+Y K   + 
Sbjct: 384 STDERPNEITFVSLLQACSLIGAQELGESIQAHATKAGYLSNAFLSSALIDLYCKFGRIN 443

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA-- 423
               +F     K  V W++++ G   NG   +A+E F  ML   V+PN+    S+L A  
Sbjct: 444 QGRAIFNEIPTKDLVCWSSMINGYGLNGCGDEALETFSNMLACGVKPNEVVFISVLSACS 503

Query: 424 --------YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
                   ++  + ++Q         +YG +  +     ++D+ S+ G++E A +  +++
Sbjct: 504 HCGLEHEGWSCFSSMEQ---------KYGIIPKLPHYACMVDLISRRGNIEGALQFVNKM 554

Query: 476 PIKDKDIVVWSVIIAG-YGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           P+ + D  +W  ++AG    HG  E A  + + ++  G+ P   ++
Sbjct: 555 PM-EPDKRIWGALLAGCRSTHGSIEIAELVAERLI--GLDPQNTSY 597



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 174/372 (46%), Gaps = 51/372 (13%)

Query: 275 ERD-VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
           E+D V++WTS I+          A+GLF++M     RPN +T+ S++ A S L      R
Sbjct: 50  EKDNVISWTSKISSLVKQNQSELAVGLFKMMLMTEQRPNHVTVLSVIRAISGLGLEDMMR 109

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            +    IK   E EV V TALI  Y+  ++  + +++F +T  K  V W+A+++ CV +G
Sbjct: 110 VICGSVIKLGFESEVSVATALIGFYSDYDM-GIVWKIFNQTPIKDLVLWSAMVSACVKSG 168

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
              +A E+FR M  + VEPN  ++ S+LPA A +  L     IH + I+  F  +  V  
Sbjct: 169 QYGEAFEIFRAMQYDGVEPNHVSIVSILPACANVGALLFGKEIHGFSIKKMFHPLTNVHN 228

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG------------------YGMH 495
            L+D+Y+KC + +++  +F +I   +KD++ W+ II G                  +   
Sbjct: 229 SLVDMYAKCRNFKASMLVFDQIL--EKDLISWTTIIRGCIENDCPREAFKAFSRMQFSCF 286

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF----NFMLENHQTCS 551
           G  ET V   ++++ + +Q +E  F  A     HG LL  GL  F      +L+ +    
Sbjct: 287 GADETIV---QDLIVAIIQADEHKFGIAF----HGFLLKNGLLAFVSIGTALLQMYAKFG 339

Query: 552 RADHYTCIVDLLGRAGRLD------------------EAYDLIRTMPLKPTHAVWGALLG 593
             +    + D L +   +                   E +  +++   +P    + +LL 
Sbjct: 340 ELESAIIVFDQLNKKDYISWSAMISVHAHSRHPYNALETFKQMQSTDERPNEITFVSLLQ 399

Query: 594 ACVIHGNVELGE 605
           AC + G  ELGE
Sbjct: 400 ACSLIGAQELGE 411


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 183/507 (36%), Positives = 293/507 (57%), Gaps = 3/507 (0%)

Query: 160 GEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVL 219
           G++  ARK+F  M        NT+I GY ++    EA+ ++ +M++ GV  D  +   VL
Sbjct: 59  GDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVL 118

Query: 220 PACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVV 279
            AC  L  +++GR  H  V     G ++   NAL+  Y  CGS   A  VFD  + RDVV
Sbjct: 119 AACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVV 178

Query: 280 TWTSMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           TW  MIN +   G    A  L  ++ + + +RP+ +T+ SL+ AC+ L  L+RG+ LH++
Sbjct: 179 TWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSY 238

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
           + +  L+  + V  A++DMY KC+ ++ + +VF R  +K  + W ++L+G   +G  ++A
Sbjct: 239 SKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEA 298

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
           + LF++M +  +E ++ TL  +L A A    L Q   IH  + ++     + + T L+D+
Sbjct: 299 LALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDM 358

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           Y+KCGS++ A ++F  + +++  +  W+ +I G  MHGHGE A+SLF +M    + P++V
Sbjct: 359 YAKCGSIDLALQVFRRMRVRN--VFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDV 416

Query: 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578
           TF + L ACSH GL+DEGL +F  M    Q   R +HY C+VDLL RA ++D+A   I  
Sbjct: 417 TFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIEN 476

Query: 579 MPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDA 638
           MP+K    +W  LLGAC   G+ +L E   + + ELEP++ G YV+LS LY+ V +W  A
Sbjct: 477 MPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHA 536

Query: 639 ENVRDVMDEKGLRKAPAHSLIEVRNIL 665
             +R  M  KG+ K P  S IE+  ++
Sbjct: 537 LKLRKQMKNKGIEKTPGCSWIELNGMI 563



 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 162/498 (32%), Positives = 268/498 (53%), Gaps = 14/498 (2%)

Query: 28  SIAGTKQLHAFIITSGPLFTHLRSSLVRAY------GHVSNVRILFDEMSERSSFLYNTV 81
           SI+ TKQ HA ++ +  L   L SS + ++      G ++  R LF +M     F+ NT+
Sbjct: 23  SISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTM 82

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           ++ YA++   ++++ ++  M+  G    DNYTYP V+ AC  L   KLG   H  VL  G
Sbjct: 83  IRGYARSQNPYEAVSLYYFMVERG-VPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNG 141

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
           F  D FV N LI  Y N G    A  VFD      VV+WN +I+ +     +++A  + D
Sbjct: 142 FGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLD 201

Query: 202 WMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
            M K   + PD  ++VS++PAC  L  +E G+ +H       L +N+   NA++DMY KC
Sbjct: 202 EMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKC 261

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
             +  A+ VF+R+ E+DV++WTSM++G A +G  + AL LFQ MQ   +  + +T+  +L
Sbjct: 262 DDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVL 321

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           SAC+    L +G+ +H    K  + C++++ETAL+DMYAKC  + L+ QVF R   +   
Sbjct: 322 SACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVF 381

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--YAILADLQQAMNIHC 438
            WNA++ G   +G    A+ LF QM  + + P+D T  +LL A  +A L D   AM    
Sbjct: 382 TWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAM-FQA 440

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
              ++     +E    ++D+  +   ++ A      +PIK  + V+W+ ++      GH 
Sbjct: 441 MKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIK-ANSVLWATLLGACRSGGHF 499

Query: 499 ETAVSLFKEMVQSGVQPN 516
           + A  + + +++  ++P+
Sbjct: 500 DLAEKIGRRVIE--LEPD 515


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 199/656 (30%), Positives = 343/656 (52%), Gaps = 8/656 (1%)

Query: 13  THLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSS-LVRAY---GHVSNVRILFD 68
           T   + L+Q+ ++ K++   +++H  +   G    +L    L++ Y   G V   + +F+
Sbjct: 4   TAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFE 63

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
            +  +  F +  ++ +Y Q G    +L MF  M +  +  P   TY  ++ AC      K
Sbjct: 64  ILERKDVFAWTRMIGIYCQQGDYDRALGMFYQM-QEEDVMPTKVTYVAILNACASTESLK 122

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
            G+ +HG++L  GF+ D FVG  LI MY   G V+ A   F  +    VVSW  +I+   
Sbjct: 123 DGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACV 182

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           ++     A  ++  M   GV P+  ++ +V  A G    +  G+ ++ LV+ G +  ++ 
Sbjct: 183 QHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVR 242

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             N+ V+M+   G + +AR +F+ M +RDVVTW  +I  Y  N +   A+ LF  +Q +G
Sbjct: 243 VMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDG 302

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           V+ N +T   +L+  +SL  L +G+ +H    +   + + +V TAL+ +Y +C     ++
Sbjct: 303 VKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAW 362

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           ++F     K  + W  +      NG  ++A++LF++M +E   P  ATL ++L   A LA
Sbjct: 363 KIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLA 422

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            LQ+   IH ++I   F   + V T LI++Y KCG +  A  +F ++    +DI+VW+ +
Sbjct: 423 ALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMA--KRDILVWNSM 480

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           +  Y  HG+ +  + LF +M   GV+ + V+F S L A SH G + +G   F  ML++  
Sbjct: 481 LGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFS 540

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP-LKPTHAVWGALLGACVIHGNVELGEVA 607
                + Y C+VDLLGRAGR+ EA D++  +    P   +W  LLGAC  H   +  + A
Sbjct: 541 ITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAA 600

Query: 608 AKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           A+ + E +P + G YV+LS +Y+A   W     +R +M  +G++K P  S IE+ N
Sbjct: 601 AEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILN 656



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 138/492 (28%), Positives = 236/492 (47%), Gaps = 4/492 (0%)

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PD   +  +++ C+       G  +H  V   GF+ +  V   LI MY   G V  A++
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VF+ +    V +W  +I  Y +      AL +F  M +  V P   + V++L AC   + 
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           ++ G  IH  +       ++    AL++MY KCGSV  A   F R+  RDVV+WT+MI  
Sbjct: 121 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 180

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
              +     A  L++ MQ +GV PN +T+ ++ +A     YL  G+ ++       +E +
Sbjct: 181 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESD 240

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           V V  + ++M+    L+  + ++F     +  V WN ++   V N    +AV LF ++  
Sbjct: 241 VRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQ 300

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           + V+ ND T   +L  Y  L  L +   IH  +   G+     V+T L+ +Y +C +   
Sbjct: 301 DGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQ 360

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A KIF  + +  KD++ W+V+   Y  +G  + A+ LF+EM   G +P   T  + L  C
Sbjct: 361 AWKIF--VDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTC 418

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           +H   L +G  + + ++EN          T ++++ G+ G++ EA  +   M  K    V
Sbjct: 419 AHLAALQKGRQIHSHIIENRFRMEMVVE-TALINMYGKCGKMAEAMSVFEKMA-KRDILV 476

Query: 588 WGALLGACVIHG 599
           W ++LGA   HG
Sbjct: 477 WNSMLGAYAQHG 488


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 187/488 (38%), Positives = 280/488 (57%), Gaps = 4/488 (0%)

Query: 180 WNTLISGY-FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           +N +I G    N  + E LVV+  ML  G+ PD  ++  VL AC   + +  G  +H   
Sbjct: 92  YNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQA 151

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               L  ++   N L+ MY  C  +  AR VFD   +RD+V+WT+MI GY   G  R  +
Sbjct: 152 IKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGV 211

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ-NLECEVIVETALIDM 357
           GLF  M  E ++ + +T+  +LS+C+ L  L+ GR LH + I+  N+  +V V  AL+DM
Sbjct: 212 GLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDM 271

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y KC     + +VF     K  V WN++++G    G  ++++ +FR+M    V+P+D TL
Sbjct: 272 YLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTL 331

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            ++L + A L  L+    +H YL R    +   +   L+D+Y+KCGS++ A  +F    +
Sbjct: 332 VAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQ--AM 389

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
             KD+  ++ +I G  MHG G  A+ LF EM + G++P+EVTF   L ACSH GL++EG 
Sbjct: 390 NRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGR 449

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             F  M   +    + +HY C+VDLLGRAG ++EA + IR MP++P   V GALLGAC I
Sbjct: 450 KYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACKI 509

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           HG VELGE   K + ++EP   G YVL+S +YS+  RW+DA  +R  M E+ L K P  S
Sbjct: 510 HGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGCS 569

Query: 658 LIEVRNIL 665
            IE+  ++
Sbjct: 570 SIELDGVI 577



 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 155/502 (30%), Positives = 260/502 (51%), Gaps = 31/502 (6%)

Query: 27  KSIAGTKQLHAFIITSGP-----LFTHLRSSLVRAYGHVSNVRI---LFDEMSERSSFLY 78
           KSI G KQ+HA II + P     L    R S + A     + R    L  ++   +  LY
Sbjct: 33  KSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPNLPLY 92

Query: 79  NTVMKMYA-QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           N +++  A  N  S + L ++  ML  G   PDNYT P V+KAC +    + G  +HG+ 
Sbjct: 93  NAIIRGLATSNNDSIEGLVVYKQMLSKG-IVPDNYTIPFVLKACAESRAVREGEEVHGQA 151

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           +  G   D +V N L+ MY     +++ARKVFD   +  +VSW T+I GY K  +A+E +
Sbjct: 152 IKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGV 211

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDM 256
            +F  M    ++ D  ++V VL +C  L ++ +GR +H  ++    +  ++   NALVDM
Sbjct: 212 GLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDM 271

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y+KCG  N AR VF  M  ++VV+W SMI+G A  G  + +L +F+ MQ  GV+P+ +T+
Sbjct: 272 YLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTL 331

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
            ++L++C++L  L+ G+ +HA+  +  +  +  +  AL+DMYAKC  +  +  VF   ++
Sbjct: 332 VAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNR 391

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA----------I 426
           K    + A++ G   +G   KA++LF +M    +EP++ T   +L A +           
Sbjct: 392 KDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKY 451

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
             D+    N+   L  YG          ++D+  + G +  A +    +PI + D  V  
Sbjct: 452 FEDMSTIYNLRPQLEHYGC---------MVDLLGRAGLINEAEEFIRNMPI-EPDAFVLG 501

Query: 487 VIIAGYGMHGHGETAVSLFKEM 508
            ++    +HG  E   S+ K++
Sbjct: 502 ALLGACKIHGKVELGESVMKKI 523



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 131/444 (29%), Positives = 231/444 (52%), Gaps = 33/444 (7%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH--- 59
           P ++T+P     V+K     A ++++   +++H   I  G     ++ ++L+R Y     
Sbjct: 123 PDNYTIP----FVLKAC---AESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDV 175

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGE-YNPDNYTYPIVI 118
           + + R +FD   +R    + T+++ Y + G + + + +F  M   GE    D  T  IV+
Sbjct: 176 IRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMC--GENLQADGMTLVIVL 233

Query: 119 KACTDLAWRKLGIALHGRVLI--TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
            +C  L   +LG  LH R +I  +  ++D FVGN L+ MY+  G+   ARKVF  M   +
Sbjct: 234 SSCARLGDLRLGRKLH-RYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKN 292

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           VVSWN++ISG  +    KE+L +F  M + GV+PD  ++V+VL +C  L  +E+G+ +H 
Sbjct: 293 VVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHA 352

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            +   ++  +    NALVDMY KCGS+++A  VF  M+ +DV ++T+MI G A++G    
Sbjct: 353 YLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGK 412

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS-LHAWTIKQNLECEVIVETALI 355
           AL LF  M   G+ P+ +T   +L+ACS +  ++ GR      +   NL  ++     ++
Sbjct: 413 ALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMV 472

Query: 356 DMYAKCNLVKLSFQVFARTS--KKKTVPWNAILAGCVHNGLARKAVELFRQML--VEVVE 411
           D+  +  L+  + + F R    +       A+L  C  +G     VEL   ++  +E +E
Sbjct: 473 DLLGRAGLINEA-EEFIRNMPIEPDAFVLGALLGACKIHG----KVELGESVMKKIEKIE 527

Query: 412 PNDATLNSLLPAYAILADLQQAMN 435
           P          AY +++++  + N
Sbjct: 528 PRKDG------AYVLMSNIYSSAN 545


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 194/595 (32%), Positives = 324/595 (54%), Gaps = 4/595 (0%)

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
           ++S +   + N  +   +++G  +++ + F  M + G  +   Y+Y  + +AC +L    
Sbjct: 40  KISHKQGQVENLHLVSLSKHGKLNEAFEFFQEMDKAG-VSVSLYSYQCLFEACRELRSLS 98

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
            G  LH R+ +   +    + NC++ MY   G ++ A K+FD M + + VS  T+IS Y 
Sbjct: 99  HGRLLHNRMRMGIENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYA 158

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           +     +A+ +F  ML+SG +P  +   ++L +    + +++GR IH  V    L  N +
Sbjct: 159 EQGLLDKAVGLFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNAS 218

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
               +V+MYVKCG +  A+ VFD+M+ +  V WT ++ GY   G  R+AL LF  +  EG
Sbjct: 219 IETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEG 278

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           V  +S     +L AC+SL  L+ G+ +HA   K  LECEV V T L+D Y KC+  + + 
Sbjct: 279 VEWDSFVFSVVLKACASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESAC 338

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE-VVEPNDATLNSLLPAYAIL 427
           + F    +   V W+AI++G        +AV+ F+ +  +  V  N  T  S+  A ++L
Sbjct: 339 RAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVL 398

Query: 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
           AD      +H   I+   +      + LI +YSKCG L+ AH++F    + + DIV W+ 
Sbjct: 399 ADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFES--MDNPDIVAWTA 456

Query: 488 IIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH 547
            I+G+  +G+   A+ LF++MV  G++PN VTF + L ACSH GL+++G    + ML  +
Sbjct: 457 FISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKY 516

Query: 548 QTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVA 607
                 DHY C++D+  R+G LDEA   ++ MP +P    W   L  C  H N+ELG++A
Sbjct: 517 NVAPTIDHYDCMIDIYARSGLLDEALRFMKNMPFEPDAMSWKCFLSGCWTHKNLELGKIA 576

Query: 608 AKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
            + L +L+PE+   YVL   LY+   +W++A  V  +M+E+ L+K  + S I+ +
Sbjct: 577 GEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEVMKLMNERMLKKELSCSWIQEK 631



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/455 (28%), Positives = 223/455 (49%), Gaps = 4/455 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G + +   LFDEMS+ ++    T++  YA+ G    ++ +F  ML  G+  P +  Y  +
Sbjct: 130 GSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESGD-KPPSSMYTTL 188

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +K+  +     +G  +H  V+  G   +  +   ++ MY+  G +  A++VFD M     
Sbjct: 189 LKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKP 248

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V+W  L+ GY +   A++AL +F  ++  GVE D      VL AC  L+E+  G+ IH  
Sbjct: 249 VAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKACASLEELRFGKQIHAC 308

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           VA   L   ++    LVD Y+KC S   A   F  + E + V+W+++I+GY        A
Sbjct: 309 VAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEA 368

Query: 298 LGLFQ-LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           +  F+ L     V  NS T  S+  ACS L     G  +HA  IK++L      E+ALI 
Sbjct: 369 VKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALIT 428

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY+KC  +  + +VF        V W A ++G  + G A +A+ LF +M+   ++PN  T
Sbjct: 429 MYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVT 488

Query: 417 LNSLLPAYAILADLQQAMN-IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
             ++L A +    ++Q  + +   L +Y     ++    +IDIY++ G L+ A +    +
Sbjct: 489 FIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALRFMKNM 548

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           P  + D + W   ++G   H + E      +E+ Q
Sbjct: 549 PF-EPDAMSWKCFLSGCWTHKNLELGKIAGEELRQ 582



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 130/271 (47%), Gaps = 8/271 (2%)

Query: 24  AATKSIAGTKQLHAFIITSG-----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLY 78
           A+ + +   KQ+HA +   G      + T L    ++     S  R  F E+ E +   +
Sbjct: 294 ASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRA-FQEIREPNDVSW 352

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
           + ++  Y Q     +++K F  +        +++TY  + +AC+ LA   +G  +H   +
Sbjct: 353 SAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHADAI 412

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
                   +  + LI MY   G +  A +VF++M    +V+W   ISG+     A EAL 
Sbjct: 413 KRSLIGSQYGESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALR 472

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR-MIHELVAGGRLGKNIAAWNALVDMY 257
           +F+ M+  G++P+  + ++VL AC +   +E G+  +  ++    +   I  ++ ++D+Y
Sbjct: 473 LFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMIDIY 532

Query: 258 VKCGSVNEA-RLVFDRMSERDVVTWTSMING 287
            + G ++EA R + +   E D ++W   ++G
Sbjct: 533 ARSGLLDEALRFMKNMPFEPDAMSWKCFLSG 563


>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1305

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 202/653 (30%), Positives = 344/653 (52%), Gaps = 72/653 (11%)

Query: 47   THLRSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR 103
            T + S+L+  YG   ++ +   +FDEM +R    +N ++ +  Q+G    ++K+F  ++R
Sbjct: 560  TRVVSALMGFYGRCVSLDLANKIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLF-RVMR 618

Query: 104  LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163
                   + T   +++ C++      G  +HG VL  GF+ +  + N LI MY   G+++
Sbjct: 619  FSGAKAYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLE 678

Query: 164  AARKVFDAMWEHS-----------------------------------VVSWNTLISGYF 188
            ++RKVF++M + +                                   +V+WN+L+SGY 
Sbjct: 679  SSRKVFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYA 738

Query: 189  KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
              A +++A+ V   +  +G++P+ +S+ S+L A      +++G+ IH  V   +L  ++ 
Sbjct: 739  SKALSRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVY 798

Query: 249  AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
                L+DMY+K G +  AR+VFD M E+++V W S+I+G +  G ++ A  L   M+ EG
Sbjct: 799  VETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEG 858

Query: 309  VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
            ++ N++T  SL+S  ++    ++  ++     K  +E  V                    
Sbjct: 859  IKSNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNV-------------------- 898

Query: 369  QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
                       V W AIL+GC  NG     +++F +M  E V PN AT++SLL     L+
Sbjct: 899  -----------VSWTAILSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLRILGCLS 947

Query: 429  DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
             L     +H + ++        V+T L+D+Y+K G L+SA +IF    IK+K +  W+ +
Sbjct: 948  LLYSGKEVHSFCLKNNLTRDAHVATALVDMYAKSGDLQSAAEIF--WGIKNKPLASWNCM 1005

Query: 489  IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
            I GY M   GE  +++F  M+++G++P+ +TFTS L  C + GL+ EG   F+ M  ++ 
Sbjct: 1006 IMGYAMFRRGEEGIAVFNAMLEAGIEPDAITFTSVLSVCKNSGLVREGWKYFDLMRSHYG 1065

Query: 549  TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAA 608
                 +H +C+V+LLGR+G LDEA+D IRTMPLKP   +WGA L +C IH ++EL E+A 
Sbjct: 1066 VIPTIEHCSCMVELLGRSGYLDEAWDFIRTMPLKPDATIWGAFLSSCKIHRDLELAEIAW 1125

Query: 609  KWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            K L  LEP N  NY+++  LYS + RW D E +R+ M    +R     S I++
Sbjct: 1126 KRLQVLEPHNSANYMMMINLYSNLNRWGDVERIRNSMSNNRVRVQDLWSWIQI 1178



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 141/529 (26%), Positives = 246/529 (46%), Gaps = 78/529 (14%)

Query: 108  NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD-MDTFVGNCLIAMYMNFGEVKAAR 166
            N D     +V + C  L +R LG  +HG ++  G D  DT V + L+  Y     +  A 
Sbjct: 521  NFDEVVLAMVFRICAVLMYRFLGFTIHGGLIKRGLDNSDTRVVSALMGFYGRCVSLDLAN 580

Query: 167  KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
            K+FD M +   ++WN ++    ++   ++A+ +F  M  SG +   +++V +L  C   +
Sbjct: 581  KIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQVCSNKE 640

Query: 227  EIEMGRMIHELV--------------------AGGRL-----------GKNIAAWNALVD 255
                GR IH  V                      G+L            +N+++WN++V 
Sbjct: 641  GFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMVDRNLSSWNSIVS 700

Query: 256  MYVKCGSVNEARLVFDRMS----ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
             Y + G V++A  + D M     + D+VTW S+++GYA     R+A+ + + +Q  G++P
Sbjct: 701  SYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAVLKRIQIAGLKP 760

Query: 312  NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
            N+ +I SLL A      +K G+++H + I+  L  +V VET LIDMY K   +  +  VF
Sbjct: 761  NTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVETTLIDMYIKTGYLPYARMVF 820

Query: 372  ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
                +K  V WN++++G  + GL ++A  L  +M  E ++ N  T NSL+  YA     +
Sbjct: 821  DMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTE 880

Query: 432  QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
            +A+ +   + + G                                  + ++V W+ I++G
Sbjct: 881  KALAVVGKMKKNGV---------------------------------EPNVVSWTAILSG 907

Query: 492  YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
               +G+    + +F +M + GV PN  T +S L       LL  G ++ +F L+N+ T  
Sbjct: 908  CSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCLKNNLT-- 965

Query: 552  RADHY-TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            R  H  T +VD+  ++G L  A ++   +  KP  A W      C+I G
Sbjct: 966  RDAHVATALVDMYAKSGDLQSAAEIFWGIKNKPL-ASWN-----CMIMG 1008



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 138/538 (25%), Positives = 239/538 (44%), Gaps = 83/538 (15%)

Query: 16   VIKLVQQYAATKSIAGTKQLHAFII-------------------------TSGPLFTHLR 50
            ++KL+Q  +  +  A  +Q+H +++                         +S  +F  + 
Sbjct: 629  MVKLLQVCSNKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMV 688

Query: 51   -------SSLVRAY---GHVSNVRILFDEMS----ERSSFLYNTVMKMYAQNGASHDSLK 96
                   +S+V +Y   G+V +   L DEM     +     +N+++  YA    S D++ 
Sbjct: 689  DRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIA 748

Query: 97   MFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMY 156
            + L  +++    P+  +   +++A  +    KLG A+HG V+      D +V   LI MY
Sbjct: 749  V-LKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVETTLIDMY 807

Query: 157  MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVV 216
            +  G +  AR VFD M E ++V+WN+LISG       KEA  +   M K G++       
Sbjct: 808  IKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIK------- 860

Query: 217  SVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-- 274
                                         N   WN+LV  Y   G   +A  V  +M   
Sbjct: 861  ----------------------------SNAVTWNSLVSGYATWGKTEKALAVVGKMKKN 892

Query: 275  --ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
              E +VV+WT++++G + NG+  N L +F  MQ EGV PNS TI SLL     L  L  G
Sbjct: 893  GVEPNVVSWTAILSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLRILGCLSLLYSG 952

Query: 333  RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
            + +H++ +K NL  +  V TAL+DMYAK   ++ + ++F     K    WN ++ G    
Sbjct: 953  KEVHSFCLKNNLTRDAHVATALVDMYAKSGDLQSAAEIFWGIKNKPLASWNCMIMGYAMF 1012

Query: 393  GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR--YGFLSVVE 450
                + + +F  ML   +EP+  T  S+L        +++    +  L+R  YG +  +E
Sbjct: 1013 RRGEEGIAVFNAMLEAGIEPDAITFTSVLSVCKNSGLVREGWK-YFDLMRSHYGVIPTIE 1071

Query: 451  VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
              + ++++  + G L+ A      +P+K  D  +W   ++   +H   E A   +K +
Sbjct: 1072 HCSCMVELLGRSGYLDEAWDFIRTMPLK-PDATIWGAFLSSCKIHRDLELAEIAWKRL 1128


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 198/575 (34%), Positives = 307/575 (53%), Gaps = 23/575 (4%)

Query: 108 NPDNYTYPI-----------VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMY 156
           NP  + +P            +++A    +  + G+ LHG +   GF  DT +GN LI MY
Sbjct: 203 NPVAFPFPTNPMERRKMIADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMY 262

Query: 157 MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM-LKSGVEPDCASV 215
              GE+  A +VF  M + +VVSW  L+ G+ ++  A   L +   M   S   P+  ++
Sbjct: 263 AKCGELDMAGEVFGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTL 322

Query: 216 VSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS- 274
            + L AC   +++  G  IH L       ++    ++LV +Y K G + +AR VFD    
Sbjct: 323 SASLKACCVTEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGL 382

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQF------EGVRPNSLTIGSLLSACSSLYY 328
            R + TW +MI+GYA  G  R+AL +F+ M+       +  +P+  T  SLL AC  L  
Sbjct: 383 GRGLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGA 442

Query: 329 LKRGRSLHAWTIKQNLEC--EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
            + G  +HA             I+  AL+DMY KC  + ++ QVF R  +K  + W  ++
Sbjct: 443 PREGAQVHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVV 502

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
            G    G   +A+ELFR+        +   L+S++   A  A ++Q   +HCY ++    
Sbjct: 503 VGHAQEGQVMEALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAG 562

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           + V     ++D+Y KCG  + A ++F EIP ++  +V W+ +I G G HG G  AV++F+
Sbjct: 563 TDVSAGNSIVDMYLKCGLPDEAERMFREIPARN--VVSWTTMINGLGKHGLGREAVAMFE 620

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           EM   GV+P+EVT+ + L ACSH GL+DE    F+ +  +     +A+HY C+VDLLGRA
Sbjct: 621 EMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRA 680

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           G L EA DLIRTMP++PT  VW  LL AC +H +V +G  A   L  ++ +NP NYV LS
Sbjct: 681 GELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAIDGDNPVNYVTLS 740

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            +++    W++   VRD M  +GL+K    S +E+
Sbjct: 741 NVFAEAGAWRECHKVRDAMRRRGLKKQGGCSWVEI 775



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 236/496 (47%), Gaps = 17/496 (3%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNVRI---LFDEM 70
           ++  L++  A   S+ G  QLH  +   G    T L ++L+  Y     + +   +F  M
Sbjct: 219 MIADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGM 278

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
            +R+   +  +M  + Q+G +   L++   M    E  P+ YT    +KAC        G
Sbjct: 279 RDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAG 338

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD-AMWEHSVVSWNTLISGYFK 189
           + +HG  + TG++    V + L+ +Y   G +  AR+VFD A     + +WN +ISGY  
Sbjct: 339 VGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAH 398

Query: 190 NAYAKEALVVFDWMLKSGV------EPDCASVVSVLPACGYLKEIEMGRMIHELVA--GG 241
             + ++AL+VF  M +         +PD  +  S+L ACG L     G  +H  +A  G 
Sbjct: 399 AGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGF 458

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
               N     ALVDMYVKCG +  A  VF+R+  ++ + WT+++ G+A  G V  AL LF
Sbjct: 459 STASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELF 518

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
           +     G R ++  + S++   +    +++GR +H + +K     +V    +++DMY KC
Sbjct: 519 RRFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKC 578

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
            L   + ++F     +  V W  ++ G   +GL R+AV +F +M    VEP++ T  +LL
Sbjct: 579 GLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALL 638

Query: 422 PA--YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
            A  +A L D +      C           E    ++D+  + G L  A  +   +P+ +
Sbjct: 639 SACSHAGLVD-ECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPM-E 696

Query: 480 KDIVVWSVIIAGYGMH 495
             + VW  +++   +H
Sbjct: 697 PTVGVWQTLLSACRVH 712



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 134/543 (24%), Positives = 233/543 (42%), Gaps = 64/543 (11%)

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA--MWEHSVVSWNTLISGY--FKNA 191
           RVL  G   DT  G+CL   YM   EV   +K  D   MW    + +  L++GY  F+  
Sbjct: 109 RVLRPGEYADTACGSCL---YMA-PEVMLFQKYDDKVDMWSIGAILFE-LLNGYPPFRGR 163

Query: 192 YAKEAL--------VVFDWMLKSGVEPDCASVVS-------------------------V 218
              + L        + F   L S + PDC  + +                         +
Sbjct: 164 SNVQLLQCINRSTSLPFSEPLASTLHPDCVDICTRLLCTNPVAFPFPTNPMERRKMIADL 223

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
           L A      +  G  +H  +     G +    N L+DMY KCG ++ A  VF  M +R+V
Sbjct: 224 LRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMRDRNV 283

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
           V+WT+++ G+  +GD    L L   M+      PN  T+ + L AC     +  G  +H 
Sbjct: 284 VSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGVGIHG 343

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLAR 396
             ++   E   +V ++L+ +Y+K   +  + +VF      +    WNA+++G  H G  R
Sbjct: 344 LCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHAGHGR 403

Query: 397 KAVELFRQMLVEVV------EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
            A+ +FR+M           +P++ T  SLL A   L   ++   +H  +   GF +   
Sbjct: 404 DALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFSTASN 463

Query: 451 --VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             ++  L+D+Y KCG L  A ++F    ++ K+ + W+ ++ G+   G    A+ LF+  
Sbjct: 464 AILAGALVDMYVKCGRLPVAMQVFER--LERKNAIQWTTVVVGHAQEGQVMEALELFRRF 521

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
            +SG + +    +S +   +   L+++G  +  + +++    +       IVD+  + G 
Sbjct: 522 WRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKS-PAGTDVSAGNSIVDMYLKCGL 580

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL-----EPENPGNYV 623
            DEA  + R +P +     W  ++     HG   LG  A     E+     EP+      
Sbjct: 581 PDEAERMFREIPARNV-VSWTTMINGLGKHG---LGREAVAMFEEMRAGGVEPDEVTYLA 636

Query: 624 LLS 626
           LLS
Sbjct: 637 LLS 639



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 129/271 (47%), Gaps = 13/271 (4%)

Query: 34  QLHAFIITSGPLFTH-----LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMY 85
           Q+HA +  SG  F+      L  +LV  Y   G +     +F+ +  +++  + TV+  +
Sbjct: 448 QVHAAMAASG--FSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGH 505

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
           AQ G   ++L++F    R G    D +    ++    D A  + G  +H   + +    D
Sbjct: 506 AQEGQVMEALELFRRFWRSGA-RADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTD 564

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
              GN ++ MY+  G    A ++F  +   +VVSW T+I+G  K+   +EA+ +F+ M  
Sbjct: 565 VSAGNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRA 624

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA-WNALVDMYVKCGSVN 264
            GVEPD  + +++L AC +   ++  R     +   R  +  A  +  +VD+  + G + 
Sbjct: 625 GGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELR 684

Query: 265 EARLVFDRMS-ERDVVTWTSMINGYALNGDV 294
           EAR +   M  E  V  W ++++   ++ DV
Sbjct: 685 EARDLIRTMPMEPTVGVWQTLLSACRVHKDV 715


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 187/513 (36%), Positives = 286/513 (55%), Gaps = 4/513 (0%)

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           LI  Y   G +  AR +FD M E  VV+W  +I+GY        A +VF  M+   ++P+
Sbjct: 49  LIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEELDPN 108

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG-SVNEARLVF 270
             ++ SVL AC  +K +  GR++H L     L   I   NAL+DMY  C  S+++A +VF
Sbjct: 109 AFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVF 168

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
             +  ++ V+WT++I GY    D    L +F+ M  E V  N  +    + AC+S+    
Sbjct: 169 RGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHT 228

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
            G  LHA   K   E  + V  +++DMY +C+    + + F   +++  + WN ++AG  
Sbjct: 229 FGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAG-Y 287

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
                 +++ +F  M  E   PN  T  S++ A A LA L     IH  +IR G    + 
Sbjct: 288 ERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLA 347

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           +S  LID+YSKCG++  +H++F  +    +D+V W+ ++ GYG HG+GE AV LF +MV+
Sbjct: 348 LSNALIDMYSKCGNIADSHQVFGGM--SRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVR 405

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
           SG++P+ V F + L ACSH GL+DEGL  F  M+ ++      + Y C+VDLLGRAG+++
Sbjct: 406 SGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVE 465

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630
           EAY+LI +MP KP   VWG  LGAC  H    LG++AA  + +L P   G YV+LS +Y+
Sbjct: 466 EAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSNIYA 525

Query: 631 AVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           A  +W +   +R +M   G +K    S +EV N
Sbjct: 526 ADGKWGEFARLRKLMKRMGNKKETGRSWVEVGN 558



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 139/494 (28%), Positives = 233/494 (47%), Gaps = 18/494 (3%)

Query: 7   HTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GHVSNV 63
           H +P      I+LVQ          T   +   I  GP  + L ++L+++Y   G +   
Sbjct: 13  HPIPLIVRNSIQLVQNC--------TTPPNPPFIPKGP--SVLATTLIKSYFGKGLIGEA 62

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
           R LFDEM ER    +  ++  Y        +  +F  M+   E +P+ +T   V+KAC  
Sbjct: 63  RTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMN-EELDPNAFTISSVLKACKG 121

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG-EVKAARKVFDAMWEHSVVSWNT 182
           +     G  +HG  +  G D   +V N L+ MY      +  A  VF  +   + VSW T
Sbjct: 122 MKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTT 181

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           LI+GY         L VF  ML   VE +  S    + AC  +     G  +H  V    
Sbjct: 182 LIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHG 241

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
              N+   N+++DMY +C   +EA   F  M++RD++TW ++I GY    +   +L +F 
Sbjct: 242 FESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTLIAGYE-RSNPTESLYVFS 300

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
           +M+ EG  PN  T  S+++AC++L +L  G+ +H   I++ L+  + +  ALIDMY+KC 
Sbjct: 301 MMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCG 360

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            +  S QVF   S++  V W A++ G   +G   +AVELF +M+   + P+     ++L 
Sbjct: 361 NIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILS 420

Query: 423 AYAILADLQQAMNIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
           A +    + + +     ++  Y      E+   ++D+  + G +E A+++   +P K  D
Sbjct: 421 ACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFK-PD 479

Query: 482 IVVWSVIIAGYGMH 495
             VW   +     H
Sbjct: 480 ECVWGPFLGACKAH 493



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 93/184 (50%), Gaps = 3/184 (1%)

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
           ++ T LI  Y    L+  +  +F    ++  V W  ++AG         A  +F +M+ E
Sbjct: 44  VLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNE 103

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG-SLES 467
            ++PN  T++S+L A   +  L     +H   I++G    + V   L+D+Y+ C  S++ 
Sbjct: 104 ELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDD 163

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A  +F  I +K++  V W+ +IAGY     G   + +F++M+   V+ N  +F+ A+ AC
Sbjct: 164 ACMVFRGIHLKNE--VSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRAC 221

Query: 528 SHGG 531
           +  G
Sbjct: 222 TSIG 225


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 182/533 (34%), Positives = 295/533 (55%), Gaps = 41/533 (7%)

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           ++F+ +     ++W ++I  Y  +    ++L  F  ML SG+ PD     SVL +C  L 
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA-------------------- 266
           ++ +G  +H  +    L  ++   NAL++MY K   + E+                    
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 267 ------------RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
                       R +F+ M E+D+V+W ++I G A NG     L + + M    ++P+S 
Sbjct: 181 VRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSF 240

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T+ S+L   +    + RG+ +H  +I+Q L+ ++ V ++LIDMYAKC  V  S +VF   
Sbjct: 241 TLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLL 300

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
           +++  + WN+I+AGCV NGL  + +  FRQML+  ++P   + +S++PA A L  L    
Sbjct: 301 TERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGK 360

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            +H Y+ R GF   + +++ L+D+Y+KCG++ +A +IF  + +  +D+V W+ +I G  +
Sbjct: 361 QLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRL--RDMVSWTAMIMGCAL 418

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           HG    A+ LF++M   G++       + L ACSHGGL+DE    FN M  +       +
Sbjct: 419 HGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVE 471

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HY  + DLLGRAGRL+EAYD I  M + PT ++W  LL AC +H N+++ E  A  + E+
Sbjct: 472 HYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEV 531

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           +P N G Y+LL+ +YSA RRWK+A   R  M   G+RK PA S IEV+N + A
Sbjct: 532 DPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYA 584



 Score =  225 bits (574), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 153/541 (28%), Positives = 261/541 (48%), Gaps = 47/541 (8%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVS---NVRILFD 68
           T  LV  L++   + KS +  +QLHA ++          S L+  Y H++   +   LF+
Sbjct: 5   TEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRLFN 64

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
            +    +  + +V++ Y  +G  H SL  F+GML  G Y PD+  +P V+K+C  L    
Sbjct: 65  TIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLY-PDHNVFPSVLKSCALLMDLN 123

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMY-------------MNFGEV------------- 162
           LG +LHG ++  G D D + GN L+ MY             +  GEV             
Sbjct: 124 LGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRT 183

Query: 163 ------KAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVV 216
                  + RK+F+ M E  +VSWNT+I+G  +N   +E L +   M  + ++PD  ++ 
Sbjct: 184 VSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLS 243

Query: 217 SVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER 276
           SVLP      +I  G+ IH       L  +I   ++L+DMY KC  V ++  VF  ++ER
Sbjct: 244 SVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTER 303

Query: 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
           D ++W S+I G   NG     L  F+ M    ++P S +  S++ AC+ L  L  G+ LH
Sbjct: 304 DGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLH 363

Query: 337 AWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR 396
            +  +   +  + + ++L+DMYAKC  ++ + Q+F R   +  V W A++ GC  +G A 
Sbjct: 364 GYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAP 423

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGL 455
            A+ELF QM  E ++       ++L A +    + +A      + R +G    VE    +
Sbjct: 424 DAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAV 476

Query: 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP 515
            D+  + G LE A+     + I      +W+ +++   +H + + A  +   +++  V P
Sbjct: 477 SDLLGRAGRLEEAYDFICGMHIGPTG-SIWATLLSACRVHKNIDMAEKVANRILE--VDP 533

Query: 516 N 516
           N
Sbjct: 534 N 534


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 192/485 (39%), Positives = 272/485 (56%), Gaps = 4/485 (0%)

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WNT +    K     +AL ++  ML+ G  P+  +    L +C  L    +G   H  + 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR--MSERDVVTWTSMINGYALNGDVRNA 297
                        L+ MY K   V+ AR VF+    S +  V + ++++GY  N    +A
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + LF+ M  EGV  NS+T+  L+ AC S   L+ G SLH  T+K   + +V V    I M
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITM 187

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y KC  V  + ++F     K  + WNA+++G   NGLA   +EL+R M +  V P+  TL
Sbjct: 188 YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTL 247

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
             +L + A L        +   +   GF S   ++  LI++Y++CG+L  A  +F  +P 
Sbjct: 248 VGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMP- 306

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            ++ +V W+ II GYGMHGHGE AV LFKEM++SG++P+   F   L ACSH GL D+GL
Sbjct: 307 -ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGL 365

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
           + F  M  N+Q     +HY+C+VDLLGRAGRL EA  LI +MP+KP  AVWGALLGAC I
Sbjct: 366 EYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKI 425

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           H NVEL E+A + + ELEPEN G YVLLS +YS     K    +R +M EK L+K P  S
Sbjct: 426 HKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCS 485

Query: 658 LIEVR 662
            +E++
Sbjct: 486 YVELK 490



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 127/447 (28%), Positives = 227/447 (50%), Gaps = 9/447 (2%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +NT ++  A+      +L ++  MLR G+  P+ +T+P  +K+C  L+   LG   HG++
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGD-RPNAFTFPFALKSCAALSLPILGSQFHGQI 66

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS---VVSWNTLISGYFKNAYAK 194
              G   + FV   LI+MY     V  ARKVF+  + HS    V +N L+SGY  N+   
Sbjct: 67  TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENF-HSRKLTVCYNALVSGYVSNSKCS 125

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           +A+++F  M + GV  +  +++ ++PAC     +E+G  +H          +++  N  +
Sbjct: 126 DAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFI 185

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
            MY+KCGSVN A+ +FD M  + +++W +M++GYA NG   N L L++ M   GV P+ +
Sbjct: 186 TMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPV 245

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T+  +LS+C++L     G  +              +  ALI+MYA+C  +  +  VF   
Sbjct: 246 TLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGM 305

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
            ++  V W AI+ G   +G    AV+LF++M+   +EP+      +L A +      Q +
Sbjct: 306 PERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGL 365

Query: 435 NIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
                + R Y      E  + ++D+  + G L+ A  +   +PIK  D  VW  ++    
Sbjct: 366 EYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIK-PDGAVWGALLGACK 424

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTF 520
           +H + E A   F+ +++  ++P  + +
Sbjct: 425 IHKNVELAELAFERVIE--LEPENIGY 449



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/416 (30%), Positives = 197/416 (47%), Gaps = 18/416 (4%)

Query: 6   HHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAYGH---VS 61
           H   P        L    A +  I G+ Q H  I   G +F   +++ L+  Y     V 
Sbjct: 34  HGDRPNAFTFPFALKSCAALSLPILGS-QFHGQITKVGCVFEPFVQTGLISMYCKGSLVD 92

Query: 62  NVRILFDE--MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           N R +F+E   S + +  YN ++  Y  N    D++ +F  M   G    ++ T   +I 
Sbjct: 93  NARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEG-VPVNSVTLLGLIP 151

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           AC      +LG +LH   L  GFD D  V NC I MYM  G V  A+K+FD M    ++S
Sbjct: 152 ACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLIS 211

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WN ++SGY +N  A   L ++  M  +GV PD  ++V VL +C  L    +G  +   + 
Sbjct: 212 WNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQ 271

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
                 N    NAL++MY +CG++ +A+ VFD M ER +V+WT++I GY ++G    A+ 
Sbjct: 272 ASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQ 331

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE--TALIDM 357
           LF+ M   G+ P+      +LSACS      +G   +   +K+N + E   E  + ++D+
Sbjct: 332 LFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLE-YFKMMKRNYQLEPGPEHYSCMVDL 390

Query: 358 YAKCNLVKLSFQVFARTS-KKKTVPWNAILAGC-VHNGLARKAVELFRQMLVEVVE 411
             +   +K +  +      K     W A+L  C +H     K VEL       V+E
Sbjct: 391 LGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIH-----KNVELAELAFERVIE 441



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 1/204 (0%)

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
           + PWN  L          +A+ L+ QML     PN  T    L + A L+        H 
Sbjct: 5   STPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHG 64

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
            + + G +    V TGLI +Y K   +++A K+F E     K  V ++ +++GY  +   
Sbjct: 65  QITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKC 124

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
             AV LF++M + GV  N VT    + AC     L+ G  L    L+ +   S      C
Sbjct: 125 SDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLK-YGFDSDVSVVNC 183

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLK 582
            + +  + G ++ A  L   MP+K
Sbjct: 184 FITMYMKCGSVNYAQKLFDEMPVK 207


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 218/646 (33%), Positives = 348/646 (53%), Gaps = 21/646 (3%)

Query: 33  KQLHAFIITSGPLFT-HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+ A +  SG L   ++ S+LV  +   G   + + +F++M  R+    N +M    + 
Sbjct: 302 EQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQ 361

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA----WRKLGIALHGRVLITGF-D 143
                + K+F  M  L   N D+Y   +++ A ++ +     R+ G  +H  V+ TG  D
Sbjct: 362 KQGEAAAKVFHEMKDLVGINSDSYV--VLLSAFSEFSVLEEGRRKGREVHAHVIRTGLND 419

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
               +GN L+ MY   G +  A  VF+ M E   VSWN+LISG  +N  +++A   F  M
Sbjct: 420 NKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRM 479

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG--KNIAAWNALVDMYVKCG 261
            ++G  P   +++S L +C  L  I +G  IH    G +LG   +++  NAL+ +Y + G
Sbjct: 480 RRTGSMPSNFTLISTLSSCASLGWIMLGEQIH--CDGLKLGLDTDVSVSNALLALYAETG 537

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYA-LNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
              E   VF  M E D V+W S+I   +     V  A+  F  M   G   + +T  ++L
Sbjct: 538 CFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINIL 597

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK-KKT 379
           SA SSL   +    +HA  +K  L  +  +  AL+  Y KC  +    ++FAR S+ +  
Sbjct: 598 SAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDE 657

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           V WN++++G +HN L  KA++L   M+ +    +  T  ++L A A +A L++ M +H  
Sbjct: 658 VSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHAC 717

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            IR    S V V + L+D+YSKCG ++ A + F  +P+++  +  W+ +I+GY  HGHGE
Sbjct: 718 GIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRN--VYSWNSMISGYARHGHGE 775

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
            A+ LF  M+  G  P+ VTF   L ACSH G ++EG + F  M E ++   R +H++C+
Sbjct: 776 KALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCM 835

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG--NVELGEVAAKWLFELEPE 617
           VDLLGRAG+LDE  D I +MP+KP   +W  +LGAC      N ELG  AA+ L ELEP+
Sbjct: 836 VDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQ 895

Query: 618 NPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           N  NYVLL+ +Y++  +W+D    R  M E  ++K    S + +++
Sbjct: 896 NAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKD 941



 Score =  188 bits (477), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 141/480 (29%), Positives = 242/480 (50%), Gaps = 27/480 (5%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           LH + +  GF  + F+ N LI +Y+  G++ +A+K+FD M   ++V+W  LISGY +N  
Sbjct: 93  LHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGK 152

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE--IEMGRMIHELVAGGRLGKNIAAW 250
             EA   F  M+++G  P+  +  S L AC        ++G  IH L++  R G ++   
Sbjct: 153 PDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVC 212

Query: 251 NALVDMYVKC-GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
           N L+ MY  C  S N+AR VFD +  R+ ++W S+I+ Y+  GD  +A  LF  MQ EG+
Sbjct: 213 NVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGL 272

Query: 310 ----RPNSLTIGSLL-SACSSLYY-LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
               +PN  T GSL+ +ACSS+ + L     + A   K     ++ V +AL+  +A+  L
Sbjct: 273 GFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGL 332

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
              +  +F +   +  V  N ++ G V       A ++F +M  ++V  N  +   LL A
Sbjct: 333 TDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM-KDLVGINSDSYVVLLSA 391

Query: 424 YAILADLQQ----AMNIHCYLIRYGF-LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           ++  + L++       +H ++IR G   + V +  GL+++Y+K G++  A  +F E+ + 
Sbjct: 392 FSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVF-ELMV- 449

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG--LLDEG 536
           +KD V W+ +I+G   +   E A   F  M ++G  P+  T  S L +C+  G  +L E 
Sbjct: 450 EKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQ 509

Query: 537 L--DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           +  D     L+   + S A     ++ L    G   E   +   MP +     W +++GA
Sbjct: 510 IHCDGLKLGLDTDVSVSNA-----LLALYAETGCFTECLKVFSLMP-EYDQVSWNSVIGA 563



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 165/615 (26%), Positives = 288/615 (46%), Gaps = 42/615 (6%)

Query: 8   TLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY---GHVS 61
           TL  ++     L+ +Y  +      ++LH   I  G    LF  L ++L+  Y   G + 
Sbjct: 66  TLFSSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLF--LSNTLINIYVRIGDLG 123

Query: 62  NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC 121
           + + LFDEMS R+   +  ++  Y QNG   ++   F  M+R G + P++Y +   ++AC
Sbjct: 124 SAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAG-FIPNHYAFGSALRAC 182

Query: 122 TDLAWR--KLGIALHGRVLITGFDMDTFVGNCLIAMYMN-FGEVKAARKVFDAMWEHSVV 178
            +      KLG+ +HG +  T +  D  V N LI+MY +       AR VFD +   + +
Sbjct: 183 QESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSI 242

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGV----EPDCASVVSVL-PACGYLKEIEMG-- 231
           SWN++IS Y +   A  A  +F  M K G+    +P+  +  S++  AC     ++ G  
Sbjct: 243 SWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACS---SVDFGLC 299

Query: 232 ---RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
              +M+  +   G L +++   +ALV  + + G  ++A+ +F++M  R+VV+   ++ G 
Sbjct: 300 VLEQMLARVEKSGFL-QDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGL 358

Query: 289 ALNGDVRNALGLFQLMQ-FEGVRPNSLTIGSLLSACSSLYYL----KRGRSLHAWTIKQN 343
                   A  +F  M+   G+  +S  +  LLSA S    L    ++GR +HA  I+  
Sbjct: 359 VKQKQGEAAAKVFHEMKDLVGINSDSYVV--LLSAFSEFSVLEEGRRKGREVHAHVIRTG 416

Query: 344 L-ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
           L + +V +   L++MYAK   +  +  VF    +K +V WN++++G   N  +  A E F
Sbjct: 417 LNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESF 476

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
            +M      P++ TL S L + A L  +     IHC  ++ G  + V VS  L+ +Y++ 
Sbjct: 477 HRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAET 536

Query: 463 GSLESAHKIFSEIPIKDKDIVVW-SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
           G      K+FS +P  + D V W SVI A          AV  F +M++ G   + VTF 
Sbjct: 537 GCFTECLKVFSLMP--EYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFI 594

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTM 579
           + L A S   L +    +   +L   + C   D      ++   G+ G ++E   +   M
Sbjct: 595 NILSAVSSLSLHEVSHQIHALVL---KYCLSDDTAIGNALLSCYGKCGEMNECEKIFARM 651

Query: 580 PLKPTHAVWGALLGA 594
                   W +++  
Sbjct: 652 SETRDEVSWNSMISG 666



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 190/421 (45%), Gaps = 30/421 (7%)

Query: 229 EMGRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           E  R +H + +  G +G N+   N L+++YV+ G +  A+ +FD MS R++VTW  +I+G
Sbjct: 88  EEARELHLQSIKYGFVG-NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISG 146

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC--SSLYYLKRGRSLHAWTIKQNLE 345
           Y  NG    A   F+ M   G  PN    GS L AC  S     K G  +H    K    
Sbjct: 147 YTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYG 206

Query: 346 CEVIVETALIDMYAKC-NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
            +V+V   LI MY  C +    +  VF     + ++ WN+I++     G A  A +LF  
Sbjct: 207 SDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSS 266

Query: 405 MLVE----VVEPNDATLNSLLPAYAILAD-----LQQAMNIHCYLIRYGFLSVVEVSTGL 455
           M  E      +PN+ T  SL+       D     L+Q +     + + GFL  + VS+ L
Sbjct: 267 MQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQML---ARVEKSGFLQDLYVSSAL 323

Query: 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP 515
           +  +++ G  + A  IF ++ +  +++V  + ++ G      GE A  +F EM +  V  
Sbjct: 324 VSGFARFGLTDDAKNIFEQMGV--RNVVSMNGLMVGLVKQKQGEAAAKVFHEM-KDLVGI 380

Query: 516 NEVTFTSALHACSHGGLLDE----GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571
           N  ++   L A S   +L+E    G ++   ++      ++      +V++  ++G + +
Sbjct: 381 NSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIAD 440

Query: 572 AYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLLSKLY 629
           A  +   M  K +   W +L+         E  E AA+    +      P N+ L+S L 
Sbjct: 441 ACSVFELMVEKDS-VSWNSLISGL---DQNECSEDAAESFHRMRRTGSMPSNFTLISTLS 496

Query: 630 S 630
           S
Sbjct: 497 S 497



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 143/324 (44%), Gaps = 28/324 (8%)

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           S CS     +  R LH  +IK      + +   LI++Y +   +  + ++F   S +  V
Sbjct: 84  SCCS-----EEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLV 138

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--YAILADLQQAMNIHC 438
            W  +++G   NG   +A   FR M+     PN     S L A   +  +  +  + IH 
Sbjct: 139 TWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHG 198

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKC-GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            + +  + S V V   LI +Y  C  S   A  +F  I I++   + W+ II+ Y   G 
Sbjct: 199 LISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNS--ISWNSIISVYSRRGD 256

Query: 498 GETAVSLFKEMVQSGV----QPNEVTFTSAL-HACSHGGLLDEGLDLFNFMLEN-HQTCS 551
             +A  LF  M + G+    +PNE TF S +  ACS    +D GL +   ML    ++  
Sbjct: 257 AVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSS---VDFGLCVLEQMLARVEKSGF 313

Query: 552 RADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
             D Y  + +V    R G  D+A ++   M ++   ++ G ++G        + GE AAK
Sbjct: 314 LQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLV----KQKQGEAAAK 369

Query: 610 WLFELEPE---NPGNYVLLSKLYS 630
              E++     N  +YV+L   +S
Sbjct: 370 VFHEMKDLVGINSDSYVVLLSAFS 393


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 206/630 (32%), Positives = 316/630 (50%), Gaps = 97/630 (15%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G ++H R++  G  +  F+ N L+  Y   G +  A +VFD M   SV SWN ++SGY K
Sbjct: 32  GKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAK 91

Query: 190 NAYAKEALVVFD---------W----------------------MLKSGVEPDCASVVSV 218
               +EA  VF+         W                      M+   V P   ++ +V
Sbjct: 92  GGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNV 151

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS---- 274
           L +C  ++ + +GR +H  V    L   I+  N+L++MY K G    A++VFDRM     
Sbjct: 152 LASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKST 211

Query: 275 ---------------------------ERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
                                      ERDVV+W +MI+GY  +G  R AL +F  M  +
Sbjct: 212 SSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMD 271

Query: 308 GV-RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC-------------------- 346
              +P+  T+ S LSAC++L  LK G+ +HA  I+   +                     
Sbjct: 272 SSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEI 331

Query: 347 -------------EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
                        +VI  TAL+D Y K   +  + ++F     +  V W A++ G V NG
Sbjct: 332 AQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNG 391

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
             + A+ELFR M+ E  +PN+ TL ++L   + LA L     IH    R G  S V VS 
Sbjct: 392 FNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSN 451

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            LI +Y+K GS+  A  +F+ I  K +D + W+ +I     HG GE A++LF+ M+++G+
Sbjct: 452 ALITMYAKSGSINDARWVFNLIHWK-RDTITWTSMIIALAQHGLGEEALTLFERMLENGI 510

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
           +P+ +T+   L AC+H GL+++G   +N M   H+      HY C++DL GRAG L EA+
Sbjct: 511 KPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAH 570

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633
             I  MP++P    WG+LL +C +H NVEL EVAA+ L  +EPEN G Y  L+ +YSA  
Sbjct: 571 AFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACG 630

Query: 634 RWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +W++A N+R  M +KG++K    S ++++N
Sbjct: 631 QWENAANIRKSMKDKGVKKDQGFSWVQIKN 660



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 230/504 (45%), Gaps = 82/504 (16%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---------- 57
           +P T   +  ++   AA + +   +++H+F++  G   +  + +SL+  Y          
Sbjct: 141 VPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAK 200

Query: 58  ------------------------GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHD 93
                                   G V   ++ F++M ER    +N ++  Y Q+G   +
Sbjct: 201 IVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDRE 260

Query: 94  SLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLI 153
           +L +F  ML      PD +T    + AC +L   KLG  +H  ++ T FD    VGN LI
Sbjct: 261 ALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALI 320

Query: 154 AM---------------------------------YMNFGEVKAARKVFDAMWEHSVVSW 180
           +M                                 Y+  G++  AR++FD++    VV+W
Sbjct: 321 SMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAW 380

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
             +I GY +N + ++A+ +F  M+K G +P+  ++ ++L     L  ++ GR IH     
Sbjct: 381 TAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATR 440

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNALG 299
                +++  NAL+ MY K GS+N+AR VF+ +  +RD +TWTSMI   A +G    AL 
Sbjct: 441 SGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALT 500

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA-----L 354
           LF+ M   G++P+ +T   +LSAC+ +  +++GRS   + + QN     I+ T      +
Sbjct: 501 LFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSY--YNLMQN--AHKIIPTPSHYACM 556

Query: 355 IDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGC-VHNGLARKAVELFRQMLVEVVEP 412
           ID++ +  L++ +         +   + W ++LA C VH  +    V   R +L+E    
Sbjct: 557 IDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIE--PE 614

Query: 413 NDATLNSLLPAYAILADLQQAMNI 436
           N    ++L   Y+     + A NI
Sbjct: 615 NSGAYSALANVYSACGQWENAANI 638


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 211/674 (31%), Positives = 351/674 (52%), Gaps = 31/674 (4%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAYG---H 59
           P H T P        +++  A    +     +H  ++ +G +    + ++LV  YG    
Sbjct: 185 PDHFTYPC-------VIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGF 237

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL---GEYNPDNYTYPI 116
           V++   LFD M ER+   +N+++++++ NG S +S  +   M+     G + PD  T   
Sbjct: 238 VTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVT 297

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           V+  C       LG  +HG  +    D +  + N L+ MY   G +  A+ +F      +
Sbjct: 298 VLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKN 357

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSG--VEPDCASVVSVLPACGY------LKEI 228
           VVSWNT++ G+           V   ML  G  V+ D  ++++ +P C +      LKE+
Sbjct: 358 VVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKEL 417

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
               +  E V       N    NA V  Y KCGS++ A+ VF  +  + V +W ++I G+
Sbjct: 418 HCYSLKQEFVY------NELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGH 471

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
           A + D R +L     M+  G+ P+S T+ SLLSACS L  L+ G+ +H + I+  LE ++
Sbjct: 472 AQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDL 531

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            V  +++ +Y  C  +     +F     K  V WN ++ G + NG   +A+ +FRQM++ 
Sbjct: 532 FVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLY 591

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            ++    ++  +  A ++L  L+     H Y +++       ++  LID+Y+K GS+  +
Sbjct: 592 GIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQS 651

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            K+F+   +K+K    W+ +I GYG+HG  + A+ LF+EM ++G  P+++TF   L AC+
Sbjct: 652 SKVFN--GLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACN 709

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI-RTMPLKPTHAV 587
           H GL+ EGL   + M  +        HY C++D+LGRAG+LD+A  ++   M  +    +
Sbjct: 710 HSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGI 769

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           W +LL +C IH N+E+GE  A  LFELEPE P NYVLLS LY+ + +W+D   VR  M+E
Sbjct: 770 WKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNE 829

Query: 648 KGLRKAPAHSLIEV 661
             LRK    S IE+
Sbjct: 830 MSLRKDAGCSWIEL 843



 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 177/623 (28%), Positives = 316/623 (50%), Gaps = 20/623 (3%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTH--LRSSLVRAY---GHVSNVRILFDEMSER 73
           L+Q     K I   +++H  +  S  L     L + ++  Y   G   + R +FD +  +
Sbjct: 90  LLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSK 149

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           + F +N V+  Y++N    + L+ F+ M+   +  PD++TYP VIKAC  ++   +G+A+
Sbjct: 150 NLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAV 209

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           HG V+ TG   D FVGN L++ Y   G V  A ++FD M E ++VSWN++I  +  N ++
Sbjct: 210 HGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFS 269

Query: 194 KEALVVFDWMLKSGVE----PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           +E+ ++   M++   +    PD A++V+VLP C   +EI +G+ +H      RL K +  
Sbjct: 270 EESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVL 329

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF--E 307
            NAL+DMY KCG +  A+++F   + ++VV+W +M+ G++  GD      + + M    E
Sbjct: 330 NNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGE 389

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
            V+ + +TI + +  C    +L   + LH +++KQ      +V  A +  YAKC  +  +
Sbjct: 390 DVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYA 449

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
            +VF     K    WNA++ G   +   R +++   QM +  + P+  T+ SLL A + L
Sbjct: 450 QRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKL 509

Query: 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
             L+    +H ++IR      + V   ++ +Y  CG L +   +F    ++DK +V W+ 
Sbjct: 510 KSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFD--AMEDKSLVSWNT 567

Query: 488 IIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH 547
           +I GY  +G  + A+ +F++MV  G+Q   ++      ACS    L  G +   + L+ H
Sbjct: 568 VITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALK-H 626

Query: 548 QTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVA 607
                A     ++D+  + G + ++  +   +  K T A W A++    IHG   L + A
Sbjct: 627 LLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKST-ASWNAMIMGYGIHG---LAKEA 682

Query: 608 AKWLFELEP--ENPGNYVLLSKL 628
            K   E++    NP +   L  L
Sbjct: 683 IKLFEEMQRTGHNPDDLTFLGVL 705


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 189/548 (34%), Positives = 306/548 (55%), Gaps = 6/548 (1%)

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +K    L +   G  LH  V+  G      + N ++ +Y+   E     K+FD M   +V
Sbjct: 80  LKISAKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNV 139

Query: 178 VSWNTLISGYF----KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
           VSWNTLI G      K A  +     F  M+   + P+C ++  +L A   L ++ + R 
Sbjct: 140 VSWNTLICGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQ 199

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           +H  +       N    +ALVD Y K G V+EA+  FD +S RD+V W  M++ YALNG 
Sbjct: 200 LHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGV 259

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              A G+F+LM+ EGV+ ++ T  S++++C  L     G+ +H   I+ + + +V+V +A
Sbjct: 260 QGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASA 319

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           L+DMY+K   ++ + + F     K  V W  ++ G   +G  ++A+ L ++M+     P+
Sbjct: 320 LVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPD 379

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
           +  L S+L +   L+   + + +H Y++  GF + + ++  L+  YSKCGS+ SA + FS
Sbjct: 380 ELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFS 439

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
            +   + DI+ W+ ++  Y  HG  +  V +F++M+ S V+P++V F   L AC+HGG +
Sbjct: 440 SVA--EPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGGFV 497

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
            EGL  FN M+  +Q    ++HYTCI+DLLGRAG LDEA +L+ +MP++P     GA LG
Sbjct: 498 LEGLHYFNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSMPVEPRSDTLGAFLG 557

Query: 594 ACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKA 653
           AC +H NV L   A++ LF +EP  P NY L+S +Y++V  W D   VR +M E+   K 
Sbjct: 558 ACKVHRNVGLARWASEKLFVMEPNEPANYSLMSNMYASVGHWFDVARVRKLMRERCDFKV 617

Query: 654 PAHSLIEV 661
           P  S +E+
Sbjct: 618 PGCSWMEI 625



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 126/458 (27%), Positives = 229/458 (50%), Gaps = 8/458 (1%)

Query: 31  GTKQLHAFIITSGPL-FTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYA 86
           G KQLHA +I  G      L++ ++  Y      ++V  +FDEM  ++   +NT++    
Sbjct: 91  GGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVV 150

Query: 87  QNGASHDSLKMFLGMLR---LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD 143
           +       +++     R   L    P+  T   +++A  +L    +   LH  +L +GFD
Sbjct: 151 EGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFD 210

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
            + FVG+ L+  Y  FG V  A+  FD +    +V WN ++S Y  N    +A  VF  M
Sbjct: 211 SNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLM 270

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
              GV+ D  +  S++ +CG L    +G+ +H L+       ++   +ALVDMY K  ++
Sbjct: 271 RLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENI 330

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
            +AR  FD M  +++V+WT+MI GY  +GD + A+ L Q M      P+ L + S+LS+C
Sbjct: 331 EDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSSC 390

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
            +L        +HA+ ++   E  + +  AL+  Y+KC  +  +FQ F+  ++   + W 
Sbjct: 391 GNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISWT 450

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR- 442
           +++     +GL+++ VE+F +ML   V P+      +L A A    + + ++    +I  
Sbjct: 451 SLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMINV 510

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           Y  +   E  T +ID+  + G L+ A  + + +P++ +
Sbjct: 511 YQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSMPVEPR 548


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 187/563 (33%), Positives = 312/563 (55%), Gaps = 17/563 (3%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           Y  +++ C D         +HG V+ TG   + FV + L+ +Y   G ++ AR+VFD M 
Sbjct: 70  YVPLLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNML 129

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
             +VV+W TL+ G+ +N+  K A+ VF  ML +G  P   ++ +VL AC  L+ +++G  
Sbjct: 130 RRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQ 189

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
            H  +    +  + +  +AL  +Y KCG + +A   F R+ E++V++WTS ++  A NG 
Sbjct: 190 FHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGA 249

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
               L LF  M    ++PN  T+ S LS C  +  L+ G  +++  IK   E  + V  +
Sbjct: 250 PVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRNS 309

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG-------------CVHNGLARKAVE 400
           L+ +Y K   +  + ++F R      V WNA++AG               H G   +A++
Sbjct: 310 LLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRG--SEALK 367

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
           LF ++ +  ++P+  TL+S+L   + +  ++Q   IH   I+ GFLS V VST LI +YS
Sbjct: 368 LFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYS 427

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           KCGS+E A K F E+    + ++ W+ +I G+  HG  + A+ +F++M  +GV+PN VTF
Sbjct: 428 KCGSIERASKAFLEMST--RTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTF 485

Query: 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
              L ACSH G++ + L+ F  M + ++     DHY C+VD+  R GRL++A + I+ M 
Sbjct: 486 VGVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNFIKKMN 545

Query: 581 LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAEN 640
            +P+  +W   +  C  HGN+ELG  AA+ L  L+P++P  YVLL  +Y +  R++D   
Sbjct: 546 YEPSEFIWSNFIAGCKSHGNLELGFYAAEQLLSLKPKDPETYVLLLNMYLSAERFEDVSR 605

Query: 641 VRDVMDEKGLRKAPAHSLIEVRN 663
           VR +M+E+ + K    S I +++
Sbjct: 606 VRKMMEEEKVGKLKDWSWISIKD 628



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/501 (28%), Positives = 253/501 (50%), Gaps = 22/501 (4%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY---GHVSNVRILFDEM 70
           + L+QQ   T+S + T+ +H  ++ +G     F  + S LV  Y   G++ + R +FD M
Sbjct: 71  VPLLQQCLDTRSYSETQIVHGHVMKTGCHDNFF--VMSFLVNVYAKCGNMEDARRVFDNM 128

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
             R+   + T+M  + QN     ++ +F  ML  G Y P  YT   V+ AC+ L   KLG
Sbjct: 129 LRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSY-PSVYTLSAVLHACSSLQSLKLG 187

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
              H  ++    D D  VG+ L ++Y   G ++ A K F  + E +V+SW + +S    N
Sbjct: 188 DQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADN 247

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
               + L +F  M+   ++P+  ++ S L  C  +  +E+G  ++ L        N+   
Sbjct: 248 GAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVR 307

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA----LNGDV-------RNALG 299
           N+L+ +Y+K G + EA  +F+RM +  +VTW +MI G+A    L  D          AL 
Sbjct: 308 NSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALK 367

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
           LF  +   G++P+  T+ S+LS CS +  +++G  +HA TIK     +VIV T+LI MY+
Sbjct: 368 LFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYS 427

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS 419
           KC  ++ + + F   S +  + W +++ G   +G++++A+ +F  M +  V PN  T   
Sbjct: 428 KCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVG 487

Query: 420 LLPAYAILADLQQAMN-IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           +L A +    + QA+N       +Y     ++    ++D++ + G LE A     ++  +
Sbjct: 488 VLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNFIKKMNYE 547

Query: 479 DKDIVVWSVIIAGYGMHGHGE 499
             +  +WS  IAG   HG+ E
Sbjct: 548 PSEF-IWSNFIAGCKSHGNLE 567



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 137/279 (49%), Gaps = 19/279 (6%)

Query: 49  LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN--------GASH---DS 94
           +R+SL+  Y   G +     LF+ M + S   +N ++  +AQ          A H   ++
Sbjct: 306 VRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEA 365

Query: 95  LKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIA 154
           LK+F   L L    PD +T   V+  C+ +   + G  +H + + TGF  D  V   LI+
Sbjct: 366 LKLF-SKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLIS 424

Query: 155 MYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
           MY   G ++ A K F  M   ++++W ++I+G+ ++  +++AL +F+ M  +GV P+  +
Sbjct: 425 MYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVT 484

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGG-RLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
            V VL AC +   +       E++    ++   +  +  +VDM+V+ G + +A     +M
Sbjct: 485 FVGVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNFIKKM 544

Query: 274 S-ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           + E     W++ I G   +G++   LG +   Q   ++P
Sbjct: 545 NYEPSEFIWSNFIAGCKSHGNLE--LGFYAAEQLLSLKP 581


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 189/571 (33%), Positives = 318/571 (55%), Gaps = 42/571 (7%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYM---NFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           +H +++ TG     +  + LI   +   +F  +  A  VF+ + E +++ WNT+  G+  
Sbjct: 6   IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 65

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           ++    AL ++  M+  G+ P+C +   +L +C   K    G+ IH  V   +LG ++  
Sbjct: 66  SSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVL--KLGYDLDL 123

Query: 250 W--NALVDMYVKCGSVNEARLVFDRMSERDVVT--------------------------- 280
           +   +L+ MYV+ G + +AR VFD+ S RDVV+                           
Sbjct: 124 YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIK 183

Query: 281 ----WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
               W +MI+GYA  G+ + AL LF+ M    VRP+  T+ S++SAC+    ++ GR +H
Sbjct: 184 DVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVH 243

Query: 337 AWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR 396
           +W         + +  ALID+Y KC  V+ +  +F   S K  + WN ++ G  H  L +
Sbjct: 244 SWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYK 303

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY--GFLSVVEVSTG 454
           +A+ LF++ML     PND T+ S+LPA A L  ++    IH Y+ +   G  +     T 
Sbjct: 304 EALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTS 363

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           LID+Y+KCG +E+A ++F  I   ++ +  W+ +I G+ MHG    A  +F  M ++ ++
Sbjct: 364 LIDMYAKCGDIEAAQQVFDSI--LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIE 421

Query: 515 PNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYD 574
           P+++TF   L ACSH G+LD G  +F  M E+++   + +HY C++DLLG +G   EA +
Sbjct: 422 PDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEE 481

Query: 575 LIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRR 634
           +I TM ++P   +W +LL AC +HGNVELGE  A+ L ++EP+NPG+YVLLS +Y+   R
Sbjct: 482 MINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGR 541

Query: 635 WKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           W +   +R ++++KG++K P  S IE+ +++
Sbjct: 542 WNEVAKIRALLNDKGMKKVPGCSSIEIDSVV 572



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 149/484 (30%), Positives = 251/484 (51%), Gaps = 38/484 (7%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F+ + E +  ++NT+ + +A +     +L +++ M+ LG   P+ YT+P ++K+C    
Sbjct: 44  VFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLL-PNCYTFPFLLKSCAKSK 102

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA-------------- 171
             + G  +HG VL  G+D+D +V   LI+MY+  G ++ ARKVFD               
Sbjct: 103 AFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIT 162

Query: 172 -------------MWEH----SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
                        M++      VVSWN +ISGY +    KEAL +F  M+K+ V PD ++
Sbjct: 163 GYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDEST 222

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           +VSV+ AC     IE+GR +H  +     G N+   NAL+D+Y+KCG V  A  +F+ +S
Sbjct: 223 MVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLS 282

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
            +DV++W ++I GY      + AL LFQ M   G  PN +T+ S+L AC+ L  ++ GR 
Sbjct: 283 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRW 342

Query: 335 LHAWTIK--QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           +H +  K  + +       T+LIDMYAKC  ++ + QVF     +    WNA++ G   +
Sbjct: 343 IHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMH 402

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEV 451
           G A  A ++F +M    +EP+D T   LL A +    L    +I   +   Y     +E 
Sbjct: 403 GRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEH 462

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
              +ID+    G  + A ++ + + + + D V+W  ++    MHG+ E   S  + +++ 
Sbjct: 463 YGCMIDLLGHSGLFKEAEEMINTMEM-EPDGVIWCSLLKACKMHGNVELGESYAQNLIK- 520

Query: 512 GVQP 515
            ++P
Sbjct: 521 -IEP 523



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 211/415 (50%), Gaps = 11/415 (2%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++L+  Y   G++++ + +FDE+  +    +N ++  YA+ G + ++L++F  M++    
Sbjct: 158 TALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTN-V 216

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PD  T   V+ AC   A  +LG  +H  +   GF  +  + N LI +Y+  GEV+ A  
Sbjct: 217 RPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACG 276

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F+ +    V+SWNTLI GY      KEAL++F  ML+SG  P+  +++S+LPAC +L  
Sbjct: 277 LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGA 336

Query: 228 IEMGRMIHELVAGGRLGKNIAAWN--ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           IE+GR IH  +     G   A+ +  +L+DMY KCG +  A+ VFD +  R + +W +MI
Sbjct: 337 IEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMI 396

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
            G+A++G    A  +F  M+   + P+ +T   LLSACS    L  GR +   ++K++ +
Sbjct: 397 FGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFR-SMKEDYK 455

Query: 346 CEVIVE--TALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELF 402
               +E    +ID+     L K + ++      +   V W ++L  C  +G      E +
Sbjct: 456 ITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELG-ESY 514

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
            Q L+++   N  +   L   YA      +   I   L   G   V   S+  ID
Sbjct: 515 AQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEID 569


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  348 bits (894), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 220/645 (34%), Positives = 352/645 (54%), Gaps = 17/645 (2%)

Query: 33  KQLHAFIITSGPLFTHL--RSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           +Q+   I  SG L T L   S LV A+   G +S  R +F++M  R++   N +M    +
Sbjct: 228 EQIMCTIQKSG-LLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVR 286

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR---KLGIALHGRVLITGF-D 143
                ++ K+F+ M  + + +P++Y   +       LA     K G  +HG V+ TG  D
Sbjct: 287 QKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVD 346

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
               +GN L+ MY   G +  AR+VF  M +   VSWN++I+G  +N    EA+  +  M
Sbjct: 347 FMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSM 406

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
            +  + P   +++S L +C  LK  ++G+ IH       +  N++  NAL+ +Y + G +
Sbjct: 407 RRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYL 466

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNG-DVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           NE R +F  M E D V+W S+I   A +   +  A+  F   Q  G + N +T  S+LSA
Sbjct: 467 NECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSA 526

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK-TVP 381
            SSL + + G+ +H   +K N+  E   E ALI  Y KC  +    ++F+R ++++  V 
Sbjct: 527 VSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVT 586

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           WN++++G +HN L  KA++L   ML      +     ++L A+A +A L++ M +H   +
Sbjct: 587 WNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSV 646

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           R    S V V + L+D+YSKCG L+ A + F+ +P+++     W+ +I+GY  HG GE A
Sbjct: 647 RACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNS--YSWNSMISGYARHGQGEEA 704

Query: 502 VSLFKEMVQSG-VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560
           + LF+ M   G   P+ VTF   L ACSH GLL+EG   F  M +++    R +H++C+ 
Sbjct: 705 LKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMA 764

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG--NVELGEVAAKWLFELEPEN 618
           D+LGRAG LD+  D I  MP+KP   +W  +LGAC        ELG+ AA+ LF+LEPEN
Sbjct: 765 DVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPEN 824

Query: 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
             NYVLL  +Y+A  RW+D    R  M +  ++K   +S + +++
Sbjct: 825 AVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKD 869



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 143/483 (29%), Positives = 236/483 (48%), Gaps = 36/483 (7%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
            H R+     D D ++ N LI  Y+  G+  +ARKVFD M   + VSW  ++SGY +N  
Sbjct: 23  FHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGE 82

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM--GRMIHELVAGGRLGKNIAAW 250
            KEALV    M+K G+  +  + VSVL AC  +  + +  GR IH L+       +    
Sbjct: 83  HKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVS 142

Query: 251 NALVDMYVKC-GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
           N L+ MY KC GSV  A   F  +  ++ V+W S+I+ Y+  GD R+A  +F  MQ++G 
Sbjct: 143 NVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGS 202

Query: 310 RPNSLTIGSLLSACSSLYY--LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           RP   T GSL++   SL    ++    +     K  L  ++ V + L+  +AK   +  +
Sbjct: 203 RPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYA 262

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM--LVEVVEPNDATLNSLLPAYA 425
            +VF +   +  V  N ++ G V      +A +LF  M  +++V   +   L S  P Y+
Sbjct: 263 RKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYS 322

Query: 426 ILAD--LQQAMNIHCYLIRYGFLS-VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           +  +  L++   +H ++I  G +  +V +  GL+++Y+KCGS+  A ++F    + DKD 
Sbjct: 323 LAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVF--YFMTDKDS 380

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGG 531
           V W+ +I G   +G    AV  +K M +  + P   T  S+L +C+           HG 
Sbjct: 381 VSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGE 440

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
            L  G+DL N  + N            ++ L    G L+E   +  +MP +     W ++
Sbjct: 441 SLKLGIDL-NVSVSN-----------ALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSI 487

Query: 592 LGA 594
           +GA
Sbjct: 488 IGA 490



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 161/593 (27%), Positives = 291/593 (49%), Gaps = 29/593 (4%)

Query: 55  RAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTY 114
           +  G V      F ++  ++S  +N+++ +Y+Q G    + ++F  M   G   P  YT+
Sbjct: 151 KCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGS-RPTEYTF 209

Query: 115 -PIVIKACTDLAWRKLGIALHGRVLIT----GFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
             +V  AC+     +  + L  +++ T    G   D FVG+ L++ +   G +  ARKVF
Sbjct: 210 GSLVTTACS---LTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVF 266

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVF-DWMLKSGVEPDCASVV-SVLPACGYLKE 227
           + M   + V+ N L+ G  +  + +EA  +F D      V P+   ++ S  P     +E
Sbjct: 267 NQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEE 326

Query: 228 IEM--GRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           + +  GR +H  ++  G +   +   N LV+MY KCGS+ +AR VF  M+++D V+W SM
Sbjct: 327 VGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSM 386

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           I G   NG    A+  ++ M+   + P S T+ S LS+C+SL + K G+ +H  ++K  +
Sbjct: 387 ITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGI 446

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLA-RKAVELFR 403
           +  V V  AL+ +YA+   +    ++F+   +   V WN+I+     +  +  +AV  F 
Sbjct: 447 DLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFL 506

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
                  + N  T +S+L A + L+  +    IH   ++            LI  Y KCG
Sbjct: 507 NAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCG 566

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            ++   KIFS +  + +D V W+ +I+GY  +     A+ L   M+Q+G + +   + + 
Sbjct: 567 EMDGCEKIFSRMAER-RDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATV 625

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPL 581
           L A +    L+ G+++    +   + C  +D    + +VD+  + GRLD A     TMP+
Sbjct: 626 LSAFASVATLERGMEVHACSV---RACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPV 682

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFE---LEPENPGNYVLLSKLYSA 631
           + +++ W +++     HG    GE A K LFE   L+ + P ++V    + SA
Sbjct: 683 RNSYS-WNSMISGYARHGQ---GEEALK-LFETMKLDGQTPPDHVTFVGVLSA 730



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 151/562 (26%), Positives = 258/562 (45%), Gaps = 24/562 (4%)

Query: 48  HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL 104
           +L ++L+ AY   G   + R +FDEM  R+   +  ++  Y++NG   ++L     M++ 
Sbjct: 37  YLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKE 96

Query: 105 GEYNPDNYTYPIVIKACTDLAWRKL--GIALHGRVLITGFDMDTFVGNCLIAMYMN-FGE 161
           G ++ + Y +  V++AC ++    +  G  +HG +    + +D  V N LI+MY    G 
Sbjct: 97  GIFS-NQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGS 155

Query: 162 VKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPA 221
           V  A   F  +   + VSWN++IS Y +    + A  +F  M   G  P   +  S++  
Sbjct: 156 VGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTT 215

Query: 222 CGYLKEIEMGRMIHEL---VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
              L E ++ R++ ++   +    L  ++   + LV  + K GS++ AR VF++M  R+ 
Sbjct: 216 ACSLTEPDV-RLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNA 274

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQ-FEGVRPNSLTIGSLLSACSSLYY-----LKRG 332
           VT   ++ G         A  LF  M     V P S  I  LLS+           LK+G
Sbjct: 275 VTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVI--LLSSFPEYSLAEEVGLKKG 332

Query: 333 RSLHAWTIKQNL-ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVH 391
           R +H   I   L +  V +   L++MYAKC  +  + +VF   + K +V WN+++ G   
Sbjct: 333 REVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQ 392

Query: 392 NGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEV 451
           NG   +AVE ++ M    + P   TL S L + A L   +    IH   ++ G    V V
Sbjct: 393 NGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSV 452

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG-ETAVSLFKEMVQ 510
           S  L+ +Y++ G L    KIFS +P  + D V W+ II            AV  F    +
Sbjct: 453 SNALMTLYAETGYLNECRKIFSSMP--EHDQVSWNSIIGALARSERSLPEAVVCFLNAQR 510

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
           +G + N +TF+S L A S     + G  +    L+N+     A     ++   G+ G +D
Sbjct: 511 AGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNN-IADEATTENALIACYGKCGEMD 569

Query: 571 EAYDLIRTMPLKPTHAVWGALL 592
               +   M  +  +  W +++
Sbjct: 570 GCEKIFSRMAERRDNVTWNSMI 591



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 137/282 (48%), Gaps = 7/282 (2%)

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           R  H  +   RL K++   N L++ Y++ G    AR VFD M  R+ V+W  +++GY+ N
Sbjct: 21  RFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRN 80

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK--RGRSLHAWTIKQNLECEVI 349
           G+ + AL   + M  EG+  N     S+L AC  +  +    GR +H    K +   + +
Sbjct: 81  GEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAV 140

Query: 350 VETALIDMYAKC-NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
           V   LI MY KC   V  +   F     K +V WN+I++     G  R A  +F  M  +
Sbjct: 141 VSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYD 200

Query: 409 VVEPNDATLNSLLPAYAILA--DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
              P + T  SL+     L   D++    I C + + G L+ + V +GL+  ++K GSL 
Sbjct: 201 GSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLS 260

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
            A K+F++  ++ ++ V  + ++ G      GE A  LF +M
Sbjct: 261 YARKVFNQ--METRNAVTLNGLMVGLVRQKWGEEATKLFMDM 300


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 205/619 (33%), Positives = 326/619 (52%), Gaps = 19/619 (3%)

Query: 57  YGHVS---NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYT 113
           Y H     + +  FD + +R+ + +  ++  +A +G S ++L+  L  +R     PD  T
Sbjct: 2   YAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRA-LERMRQDGVRPDAVT 60

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           +   + +C D    + GI +H  V+ +  ++D  V N L+ MY   G +  A++VF  M 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 174 E-HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
              +V+SW+ +   +  +    EAL  F +ML  G++   +++V++L AC     ++ GR
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGR 180

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE--RDVVTWTSMINGYAL 290
           MIH  +A       +   NA++ MY +CG+V EAR VFD M E  RDVV+W  M++ Y  
Sbjct: 181 MIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVH 240

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           N   ++A+ L+Q MQ   +RP+ +T  SLLSACSS   +  GR LH   +   LE  VIV
Sbjct: 241 NDRGKDAIQLYQRMQ---LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIV 297

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML---- 406
             AL+ MYAKC     +  VF +  ++  + W  I++  V   L  +A  LF+QML    
Sbjct: 298 GNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEK 357

Query: 407 ---VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
               + V+P+     ++L A A ++ L+Q   +       G  S   V T ++++Y KCG
Sbjct: 358 NGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCG 417

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            +E A +IF  +  +  D+ +W+ +IA Y   G    A+ LF  M   GV+P+  +F S 
Sbjct: 418 EIEEARRIFDAVCSR-PDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSI 476

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRA-DHYTCIVDLLGRAGRLDEAYDLIRTMPLK 582
           L ACSH GL D+G   F  M   ++  +R   H+ C+ DLLGR GRL EA + +  +P+K
Sbjct: 477 LLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVK 536

Query: 583 PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642
           P    W +LL AC  H +++  +  A  L  LEP     YV LS +Y+ +++W     VR
Sbjct: 537 PDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVR 596

Query: 643 DVMDEKGLRKAPAHSLIEV 661
             M E+G++K    S IE+
Sbjct: 597 KFMAEQGVKKERGVSTIEI 615



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 136/489 (27%), Positives = 249/489 (50%), Gaps = 27/489 (5%)

Query: 155 MYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
           MY +      A+  FDA+ + ++ SW  L++ +  +  +KE L   + M + GV PD  +
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
            ++ L +CG  + +  G  IH++V   RL  +    NAL++MY KCGS++ A+ VF +M 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 275 E-RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
             R+V++W+ M   +AL+G+V  AL  F+ M   G++     + ++LSACSS   ++ GR
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGR 180

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK--KKTVPWNAILAGCVH 391
            +H+       E E++V  A++ MY +C  V+ + +VF    +  +  V WN +L+  VH
Sbjct: 181 MIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVH 240

Query: 392 NGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEV 451
           N   + A++L+++M    + P+  T  SLL A +   D+     +H  ++       V V
Sbjct: 241 NDRGKDAIQLYQRMQ---LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIV 297

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ- 510
              L+ +Y+KCGS   A  +F +  ++ + I+ W+ II+ Y        A  LF++M++ 
Sbjct: 298 GNALVSMYAKCGSHTEARAVFDK--MEQRSIISWTTIISAYVRRRLVAEACHLFQQMLEL 355

Query: 511 ------SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY---TCIVD 561
                   V+P+ + F + L+AC+    L++G      + E   +C  +      T +V+
Sbjct: 356 EKNGSSQRVKPDALAFVTILNACADVSALEQG----KMVSEQAASCGLSSDKAVGTAVVN 411

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK--WLFELEPENP 619
           L G+ G ++EA  +   +  +P   +W A++    ++        A K  W  E+E   P
Sbjct: 412 LYGKCGEIEEARRIFDAVCSRPDVQLWNAMIA---VYAQFGQSHEALKLFWRMEMEGVRP 468

Query: 620 GNYVLLSKL 628
            ++  +S L
Sbjct: 469 DSFSFVSIL 477



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 136/479 (28%), Positives = 249/479 (51%), Gaps = 22/479 (4%)

Query: 34  QLHAFIITS----GPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMK-MYAQN 88
           ++H  ++ S     P  ++   ++ +  G +S+ + +F +M    + +  ++M   +A +
Sbjct: 79  RIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALH 138

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   ++L+ F  ML LG           ++ AC+  A  + G  +H  + ++GF+ +  V
Sbjct: 139 GNVWEALRHFRFMLLLG-IKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLV 197

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWE--HSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
            N ++ MY   G V+ ARKVFDAM E    VVSWN ++S Y  N   K+A+ ++  M   
Sbjct: 198 ANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRM--- 254

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
            + PD  + VS+L AC   +++ +GR++H+ +    L KN+   NALV MY KCGS  EA
Sbjct: 255 QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEA 314

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM-------QFEGVRPNSLTIGSL 319
           R VFD+M +R +++WT++I+ Y     V  A  LFQ M         + V+P++L   ++
Sbjct: 315 RAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTI 374

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF-ARTSKKK 378
           L+AC+ +  L++G+ +        L  +  V TA++++Y KC  ++ + ++F A  S+  
Sbjct: 375 LNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPD 434

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--YAILADLQQAMNI 436
              WNA++A     G + +A++LF +M +E V P+  +  S+L A  +  L D  ++   
Sbjct: 435 VQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFT 494

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
                       ++    + D+  + G L+ A +   ++P+K  D V W+ ++A    H
Sbjct: 495 SMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVK-PDAVAWTSLLAACRNH 552


>gi|222625199|gb|EEE59331.1| hypothetical protein OsJ_11408 [Oryza sativa Japonica Group]
          Length = 691

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 197/577 (34%), Positives = 306/577 (53%), Gaps = 3/577 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +++ R LFD M ER+   + T+++ +AQ G    +  +F   LR   +  + +    +
Sbjct: 110 GPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFR-RLRWEGHEVNQFVLTTM 168

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +K    +    L   +H      G D + FVG+ LI  Y     V  A  VF+ +     
Sbjct: 169 LKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDA 228

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V W  ++S Y +N   + A  VF  M  SG +P+  ++ SVL A   L  + +G+ IH  
Sbjct: 229 VVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGC 288

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                         AL+DMY KCG + +ARL F+ +   DV+  + MI+ YA +     A
Sbjct: 289 AIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQA 348

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
             LF  +    V PN  ++ S+L AC+++  L  G+ +H   IK   E ++ V  AL+D 
Sbjct: 349 FELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDF 408

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           YAKCN +  S ++F+       V WN I+ G   +GL  +A+ +F +M    +     T 
Sbjct: 409 YAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTY 468

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +S+L A A  A ++ A  IHC + +  F +   +   LID Y+KCG +  A K+F  +  
Sbjct: 469 SSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHL-- 526

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            ++DI+ W+ II+GY +HG    A+ LF  M +S V+ N++TF + L  CS  GL++ GL
Sbjct: 527 MERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGL 586

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
            LF+ M  +H      +HYTCIV LLGRAGRL++A   I  +P  P+  VW ALL +C+I
Sbjct: 587 SLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCII 646

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRR 634
           H NV LG  +A+ + E+EP++   YVLLS +Y+A R+
Sbjct: 647 HKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAARK 683


>gi|222637655|gb|EEE67787.1| hypothetical protein OsJ_25518 [Oryza sativa Japonica Group]
          Length = 588

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 205/552 (37%), Positives = 296/552 (53%), Gaps = 12/552 (2%)

Query: 101 MLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG 160
           MLR G   PD  T  + +          L   LH     +G   D FVGN L+  Y   G
Sbjct: 1   MLRSGAVRPDAVTCTVALSLAAGRGEGFLVRQLHALAWRSGLAADVFVGNALVTAYSRGG 60

Query: 161 EVKAARKVFDAMWEHSVVSWNTLISGYFKNA-YAKEALVVFDWMLKSG-VEPDCASVVSV 218
            +  AR VFD M    +VSWN LI G  ++     E + VF  ML+ G V+PD  SV SV
Sbjct: 61  SLGEARSVFDDMPARDLVSWNALICGLAQDGDCPAEVIGVFLRMLRDGDVQPDRISVCSV 120

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
           +PACG   ++E+GR +H       +   ++  N LV MY KCG+   AR +FD MSERDV
Sbjct: 121 IPACGGEGKLELGRQVHGFAVKLGVEGYVSIGNVLVAMYYKCGAPGSARRLFDAMSERDV 180

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           V+WT+     A++ D  +AL LF  M+ +GV PN +T  +L+SA  +    +  + +HA 
Sbjct: 181 VSWTT-----AISMDGEDALTLFNGMRRDGVPPNEVTFVALMSALPADCPARGAQMVHAA 235

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
            +K  +  E     +LI MYAK   +  +  VF    +++ + WNA+++G   NG    A
Sbjct: 236 CLKAAVSGEAAASNSLITMYAKARRMDDARMVFDLMPRREIIAWNAVISGYAQNGRCNDA 295

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN--IHCYLIRYGFLSVVEVSTGLI 456
           +ELF  M    + PN+ T  S+L A   +  +  A     H   +  GF     V+  LI
Sbjct: 296 LELFSSM-ARCLTPNETTFASVLSAVTAVETVSMAYGQMYHSRALSMGFGDSEYVAGALI 354

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
           D+Y+K G+LE + K F E   + + ++ W+ II+    HG     +SLF +M +SGV P+
Sbjct: 355 DMYAKRGNLEESRKAFHET--EQRSLIAWTAIISANARHGSYGAVMSLFGDMARSGVAPD 412

Query: 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
            V   + L AC +GG++D G D+F+ M  +       +HY+C+VD+LGRAGRL EA +L+
Sbjct: 413 GVVLLAVLTACRYGGMVDAGRDIFDSMAADRGVELWPEHYSCVVDMLGRAGRLAEAEELM 472

Query: 577 RTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWK 636
             MP  P+ +   +LLGAC IHG+ E+GE  A+ L E EP   G YVLLS +Y+ V  W 
Sbjct: 473 MRMPAGPSVSALQSLLGACRIHGDAEIGERIARILTEKEPTESGAYVLLSNIYADVGDWD 532

Query: 637 DAENVRDVMDEK 648
               VR  M +K
Sbjct: 533 GVAKVRRKMRDK 544



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 142/494 (28%), Positives = 235/494 (47%), Gaps = 19/494 (3%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +QLHA    SG      + ++LV AY   G +   R +FD+M  R    +N ++   AQ+
Sbjct: 31  RQLHALAWRSGLAADVFVGNALVTAYSRGGSLGEARSVFDDMPARDLVSWNALICGLAQD 90

Query: 89  G-ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           G    + + +FL MLR G+  PD  +   VI AC      +LG  +HG  +  G +    
Sbjct: 91  GDCPAEVIGVFLRMLRDGDVQPDRISVCSVIPACGGEGKLELGRQVHGFAVKLGVEGYVS 150

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           +GN L+AMY   G   +AR++FDAM E  VVSW T IS        ++AL +F+ M + G
Sbjct: 151 IGNVLVAMYYKCGAPGSARRLFDAMSERDVVSWTTAIS-----MDGEDALTLFNGMRRDG 205

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           V P+  + V+++ A          +M+H       +    AA N+L+ MY K   +++AR
Sbjct: 206 VPPNEVTFVALMSALPADCPARGAQMVHAACLKAAVSGEAAASNSLITMYAKARRMDDAR 265

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL- 326
           +VFD M  R+++ W ++I+GYA NG   +AL LF  M    + PN  T  S+LSA +++ 
Sbjct: 266 MVFDLMPRREIIAWNAVISGYAQNGRCNDALELFSSMA-RCLTPNETTFASVLSAVTAVE 324

Query: 327 -YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
              +  G+  H+  +         V  ALIDMYAK   ++ S + F  T ++  + W AI
Sbjct: 325 TVSMAYGQMYHSRALSMGFGDSEYVAGALIDMYAKRGNLEESRKAFHETEQRSLIAWTAI 384

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--YAILADLQQAMNIHCYLIRY 443
           ++    +G     + LF  M    V P+   L ++L A  Y  + D  + +         
Sbjct: 385 ISANARHGSYGAVMSLFGDMARSGVAPDGVVLLAVLTACRYGGMVDAGRDI-FDSMAADR 443

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
           G     E  + ++D+  + G L  A ++   +P     +     ++    +HG  E    
Sbjct: 444 GVELWPEHYSCVVDMLGRAGRLAEAEELMMRMP-AGPSVSALQSLLGACRIHGDAEIGER 502

Query: 504 LFKEMVQSGVQPNE 517
           + + + +   +P E
Sbjct: 503 IARILTEK--EPTE 514



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 138/303 (45%), Gaps = 16/303 (5%)

Query: 2   NGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRS-SLVRAYG-- 58
           NG     +P      + L+    A     G + +HA  + +        S SL+  Y   
Sbjct: 199 NGMRRDGVPPNEVTFVALMSALPADCPARGAQMVHAACLKAAVSGEAAASNSLITMYAKA 258

Query: 59  -HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
             + + R++FD M  R    +N V+  YAQNG  +D+L++F  M R     P+  T+  V
Sbjct: 259 RRMDDARMVFDLMPRREIIAWNAVISGYAQNGRCNDALELFSSMARC--LTPNETTFASV 316

Query: 118 IKACTDLAWRKL--GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           + A T +    +  G   H R L  GF    +V   LI MY   G ++ +RK F    + 
Sbjct: 317 LSAVTAVETVSMAYGQMYHSRALSMGFGDSEYVAGALIDMYAKRGNLEESRKAFHETEQR 376

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
           S+++W  +IS   ++      + +F  M +SGV PD   +++VL AC Y   ++ GR I 
Sbjct: 377 SLIAWTAIISANARHGSYGAVMSLFGDMARSGVAPDGVVLLAVLTACRYGGMVDAGRDIF 436

Query: 236 ELVAGGRLGKNIAAW----NALVDMYVKCGSVNEARLVFDRM-SERDVVTWTSMINGYAL 290
           + +A  R    +  W    + +VDM  + G + EA  +  RM +   V    S++    +
Sbjct: 437 DSMAADR---GVELWPEHYSCVVDMLGRAGRLAEAEELMMRMPAGPSVSALQSLLGACRI 493

Query: 291 NGD 293
           +GD
Sbjct: 494 HGD 496


>gi|224063136|ref|XP_002301008.1| predicted protein [Populus trichocarpa]
 gi|222842734|gb|EEE80281.1| predicted protein [Populus trichocarpa]
          Length = 691

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 214/689 (31%), Positives = 345/689 (50%), Gaps = 48/689 (6%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH---LRSSLVRAYGHVS---NVRILFDE 69
           ++  ++     K++   K  H+ +I +G  ++H   +  +LV  Y   +   +   LFDE
Sbjct: 6   IVAAIRHCGRVKALKQGKSFHSHLIKTG--YSHNVYIACNLVSMYADFTFLIDAYKLFDE 63

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           M  ++   + T++  Y  NG   +++K++  ML      P+ + Y +V+KAC  +   +L
Sbjct: 64  MPVKNIVTWTTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGEIEL 123

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW-EHSVVSWNTLISGYF 188
           G  +H R      D D  + N L+ MY+  G +  ARKVFD ++   +  SWNT+ISGYF
Sbjct: 124 GRLIHKRFSRENLDYDIVLLNALLDMYVKCGCLSDARKVFDRIFLRANSTSWNTMISGYF 183

Query: 189 KNAYAKEALVVFD---------W---------------------MLKSGVEPDCASVVSV 218
           K    +EA+ +F+         W                     M + G++ D  +    
Sbjct: 184 KEGLVEEAVNLFNQMPDRNVVSWNTIIAGLAENGSSRALQFVCKMHREGIKLDKFTFPCA 243

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE--- 275
           L  C Y   +  G+ IH  V    L  +  A +ALVDMY  C  +++A  +FD+ S    
Sbjct: 244 LKTCSYAGFLVAGKQIHCYVLKSGLESSCFAVSALVDMYSNCNGLDDAIRLFDQYSGGTG 303

Query: 276 ---RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
                +V W SM++GY ++   R A+ +   +   G   +S T+ S L  C +L  ++ G
Sbjct: 304 SICDSLVLWNSMLSGYVVHEKNRAAVNMIAQIHHSGASVDSYTLSSALKVCINLLNVRLG 363

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
             +HA  +    E + +V + L+D+YAK   +K +F++F R  KK  V W+ +L GC   
Sbjct: 364 IQVHALIVTSGHELDYVVGSILVDLYAKLGNMKDAFKLFHRLPKKDIVAWSGLLMGCAKM 423

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
            L   A+ LFR M+   VE +   ++++L   + LA +     +H + I+ G+ +     
Sbjct: 424 ELNSLALSLFRDMVTFGVEVDQYIVSNVLKVCSSLASIGTGKQVHAFCIKRGYETEQVTI 483

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
           T LID+YSKCG +E    +F    + D+D+V W+ II G   +G    A+ +F++MVQSG
Sbjct: 484 TALIDMYSKCGEVEDGLVLFG--CVADRDVVCWTGIIVGCAQNGRANEALEIFRQMVQSG 541

Query: 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572
           ++PNEVT+   L AC H GL+ E   +F  M  +H+   + +HY C+VDLL +AG   E 
Sbjct: 542 LKPNEVTYLGVLTACRHAGLVVEAQTIFGTMKCDHRLEPQLEHYYCMVDLLCQAGYFKEV 601

Query: 573 YDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAV 632
             LI  MP KP   +W ++LGAC  H N  L    A+ L    P +P  YV+LS  Y  +
Sbjct: 602 EKLIAEMPFKPDKTIWSSMLGACGTHRNTGLVSTIAENLLANCPNDPSIYVMLSNAYGTL 661

Query: 633 RRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
             W     VR+   + G+ KA   S IE+
Sbjct: 662 GMWDSLSQVREAAKKLGV-KAAGTSWIEI 689



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 195/431 (45%), Gaps = 58/431 (13%)

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D   +V+ +  CG +K ++ G+  H  +       N+     LV MY     + +A  +F
Sbjct: 2   DLKHIVAAIRHCGRVKALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLIDAYKLF 61

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           D M  +++VTWT+M++ Y  NG  R A+ L+ +++  +   PN      +L AC  +  +
Sbjct: 62  DEMPVKNIVTWTTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGEI 121

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKC---------------------------- 361
           + GR +H    ++NL+ ++++  AL+DMY KC                            
Sbjct: 122 ELGRLIHKRFSRENLDYDIVLLNALLDMYVKCGCLSDARKVFDRIFLRANSTSWNTMISG 181

Query: 362 ----NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
                LV+ +  +F +   +  V WN I+AG   NG +R A++   +M  E ++ +  T 
Sbjct: 182 YFKEGLVEEAVNLFNQMPDRNVVSWNTIIAGLAENGSSR-ALQFVCKMHREGIKLDKFTF 240

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI-- 475
              L   +    L     IHCY+++ G  S     + L+D+YS C  L+ A ++F +   
Sbjct: 241 PCALKTCSYAGFLVAGKQIHCYVLKSGLESSCFAVSALVDMYSNCNGLDDAIRLFDQYSG 300

Query: 476 ---PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
               I D  +V+W+ +++GY +H     AV++  ++  SG   +  T +SAL  C     
Sbjct: 301 GTGSICDS-LVLWNSMLSGYVVHEKNRAAVNMIAQIHHSGASVDSYTLSSALKVC----- 354

Query: 533 LDEGLDLFNFML--ENHQTCSRADHY------TCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
               ++L N  L  + H     + H       + +VDL  + G + +A+ L   +P K  
Sbjct: 355 ----INLLNVRLGIQVHALIVTSGHELDYVVGSILVDLYAKLGNMKDAFKLFHRLPKKDI 410

Query: 585 HAVWGALLGAC 595
            A W  LL  C
Sbjct: 411 VA-WSGLLMGC 420



 Score = 45.8 bits (107), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 40/215 (18%)

Query: 14  HLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLR-SSLVRAY---GHVSNVRILFDE 69
           ++V  +++  ++  SI   KQ+HAF I  G     +  ++L+  Y   G V +  +LF  
Sbjct: 446 YIVSNVLKVCSSLASIGTGKQVHAFCIKRGYETEQVTITALIDMYSKCGEVEDGLVLFGC 505

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           +++R    +  ++   AQNG ++++L++F  M++ G   P+  TY  V+ AC     R  
Sbjct: 506 VADRDVVCWTGIIVGCAQNGRANEALEIFRQMVQSG-LKPNEVTYLGVLTAC-----RHA 559

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI-SGYF 188
           G+ +  + +                    FG +K   ++ +   EH     + L  +GYF
Sbjct: 560 GLVVEAQTI--------------------FGTMKCDHRL-EPQLEHYYCMVDLLCQAGYF 598

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
           K      A + F        +PD     S+L ACG
Sbjct: 599 KEVEKLIAEMPF--------KPDKTIWSSMLGACG 625


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 193/547 (35%), Positives = 299/547 (54%), Gaps = 43/547 (7%)

Query: 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVS 217
           +F  +  A  VF+ + E +++ WNT++ G+  ++    AL ++  M+  G  P+  S   
Sbjct: 10  HFDGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPF 69

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLG--------------------------------- 244
           +L +C   K  E GR IH  V   +LG                                 
Sbjct: 70  LLKSCAKSKAFEEGRQIHAQVL--KLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSH 127

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
           +++ +  AL+  Y   G    AR VFD ++ERDVV+W +MI GY  NG    AL LF+ M
Sbjct: 128 RDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEM 187

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK----QNLECEVIVETALIDMYAK 360
               VRP+  T+ S++SAC+    ++ GR +H+W             + +  ALID+Y+K
Sbjct: 188 MRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSK 247

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           C  V+ +F +F   S K  V WN ++ G  H  L ++A+ LF++ML     PND TL S+
Sbjct: 248 CGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSV 307

Query: 421 LPAYAILADLQQAMNIHCYLIRY--GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           LPA A L  +     IH Y+ +   G  +   + T LID+Y+KCG +E+AH++F+ +  +
Sbjct: 308 LPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYR 367

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
              +  W+ +I G+ MHG    A  LF  M  + V+P+++TF   L ACSH GLLD G  
Sbjct: 368 S--LSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQ 425

Query: 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
           +F  M +++    + +HY C++DLLG +G   EA ++I TMP++P   +W +LL AC  H
Sbjct: 426 IFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKH 485

Query: 599 GNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSL 658
           GN+EL E  A+ L ++EPEN G+YVLLS +Y+   RW+D   VR V++ KG++K P  S 
Sbjct: 486 GNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSS 545

Query: 659 IEVRNIL 665
           IEV +++
Sbjct: 546 IEVDSVV 552



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 151/498 (30%), Positives = 253/498 (50%), Gaps = 60/498 (12%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F+ + E +  ++NT+++ +A +     +L+M++ M+ LG   P++Y++P ++K+C    
Sbjct: 20  VFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHL-PNSYSFPFLLKSCAKSK 78

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYM---------------------------- 157
             + G  +H +VL  G  +D +V   LI+MY                             
Sbjct: 79  AFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALIT 138

Query: 158 ---NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
              + G+ ++ARKVFD + E  VVSWN +I+GY +N   +EAL +F  M+++ V PD  +
Sbjct: 139 GYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGT 198

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGR----LGKNIAAWNALVDMYVKCGSVNEARLVF 270
           +VSV+ AC     IE+GR +H  V           ++   NAL+D+Y KCG V  A  +F
Sbjct: 199 LVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLF 258

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
           + +S +DVV+W ++I GY      + AL LFQ M   G  PN +T+ S+L AC+ L  + 
Sbjct: 259 EGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAID 318

Query: 331 RGRSLHAWTIK--QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
            GR +H +  K  + +  E  + T+LIDMYAKC  ++ + QVF     +    WNA++ G
Sbjct: 319 IGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFG 378

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA----------ILADLQQAMNIHC 438
              +G A  A +LF +M    VEP+D T   LL A +          I   + Q  N+  
Sbjct: 379 FAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTP 438

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
            L  YG          +ID+    G  + A ++   +P+ + D V+W  ++     HG+ 
Sbjct: 439 KLEHYGC---------MIDLLGHSGLFKEAEEMIHTMPM-EPDGVIWCSLLKACKKHGNL 488

Query: 499 ETAVSLFKEMVQSGVQPN 516
           E A S  +++++  ++P 
Sbjct: 489 ELAESFAQKLIK--IEPE 504



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 130/418 (31%), Positives = 202/418 (48%), Gaps = 13/418 (3%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++L+  Y   G   + R +FDE++ER    +N ++  Y +NG   ++L++F  M+R    
Sbjct: 134 TALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTN-V 192

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT----GFDMDTFVGNCLIAMYMNFGEVK 163
            PD  T   V+ AC      +LG  +H  V       GF     + N LI +Y   G+V+
Sbjct: 193 RPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVE 252

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
            A  +F+ +    VVSWNTLI GY      KEAL++F  ML+SG  P+  +++SVLPAC 
Sbjct: 253 TAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACA 312

Query: 224 YLKEIEMGRMIHELVAGGRLG--KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTW 281
           +L  I++GR IH  +     G     +   +L+DMY KCG +  A  VF+ M  R + +W
Sbjct: 313 HLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSW 372

Query: 282 TSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL-HAWTI 340
            +MI G+A++G    A  LF  M+   V P+ +T   LLSACS    L  GR +  + T 
Sbjct: 373 NAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQ 432

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQ-VFARTSKKKTVPWNAILAGCVHNGLARKAV 399
             NL  ++     +ID+     L K + + +     +   V W ++L  C  +G    A 
Sbjct: 433 DYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELA- 491

Query: 400 ELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
           E F Q L+++   N  +   L   YA     +    +   L   G   V   S+  +D
Sbjct: 492 ESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVD 549


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 182/557 (32%), Positives = 311/557 (55%), Gaps = 7/557 (1%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           D +    ++ ACT L   + G  LH  ++ITGF  D  +   L+ MY   G +  A++VF
Sbjct: 9   DKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVF 68

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           + M    + +W+++IS Y +    + A+V++  M+  GVEP+  +    L  C  +  + 
Sbjct: 69  EGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLA 128

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
            GR IH+ +   ++ ++    ++L++MY+KC  + EAR VF+ M  R+V ++T+MI+ Y 
Sbjct: 129 DGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYV 188

Query: 290 LNGDVRNALGLFQLM-QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
             G+   AL LF  M + E + PN+ T  ++L A   L  L++GR +H     +  +  V
Sbjct: 189 QAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNV 248

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
           +V+ AL+ MY KC     + +VF   + +  + W +++A    +G  ++A+ LF++M   
Sbjct: 249 VVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM--- 305

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            VEP+  + +S L A A+L  L +   IH  ++    L+  ++ T L+ +Y++CGSL+ A
Sbjct: 306 DVEPSGVSFSSALNACALLGALDEGREIHHRVVE-AHLASPQMETSLLSMYARCGSLDDA 364

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            ++F+ +  K +D    + +IA +  HG  + A+ +++ M Q G+  + +TF S L ACS
Sbjct: 365 RRVFNRM--KTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLVACS 422

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           H  L+ +  D F  ++ +H      +HY C+VD+LGR+GRL +A +L+ TMP +     W
Sbjct: 423 HTSLVADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQTDAVAW 482

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
             LL  C  HG++  GE AA+ +FEL P     YV LS +Y+A +R+ DA  VR  M+E+
Sbjct: 483 MTLLSGCKRHGDLNRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEER 542

Query: 649 GLRKAPAHSLIEVRNIL 665
           G+    A S IE+ N L
Sbjct: 543 GVTTPVAVSYIEIDNEL 559



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 152/526 (28%), Positives = 267/526 (50%), Gaps = 23/526 (4%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSG-----PLFTHLRSSLVRAYGHVSNVRILFDE 69
           +V  LV      +++   ++LH  +I +G     PL T L     +  G + + + +F+ 
Sbjct: 12  IVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKC-GSLDDAKRVFEG 70

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           M  +  F +++++  YA+ G    ++ ++  M+  G   P+  T+   +  C  +A    
Sbjct: 71  MEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEG-VEPNVVTFACALGGCASVAGLAD 129

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G A+H R+L +    D  + + L+ MY+   E+  ARKVF+ M   +V S+  +IS Y +
Sbjct: 130 GRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQ 189

Query: 190 NAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
                EAL +F  M K   +EP+  +  ++L A   L  +E GR +H  +A      N+ 
Sbjct: 190 AGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVV 249

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             NALV MY KCGS  EAR VFD M+ R+V++WTSMI  YA +G+ + AL LF+ M  E 
Sbjct: 250 VQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMDVE- 308

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
             P+ ++  S L+AC+ L  L  GR +H   ++ +L    + ET+L+ MYA+C  +  + 
Sbjct: 309 --PSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQM-ETSLLSMYARCGSLDDAR 365

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA---YA 425
           +VF R   +     NA++A    +G  ++A+ ++R+M  E +  +  T  S+L A    +
Sbjct: 366 RVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLVACSHTS 425

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
           ++AD +        ++ +G + +VE    ++D+  + G L  A ++   +P +  D V W
Sbjct: 426 LVADCRDF--FQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQ-TDAVAW 482

Query: 486 SVIIAGYGMHG---HGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
             +++G   HG    GE A     E+  +   P    F S ++A +
Sbjct: 483 MTLLSGCKRHGDLNRGERAARKVFELAPAETLP--YVFLSNMYAAA 526



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/401 (32%), Positives = 224/401 (55%), Gaps = 13/401 (3%)

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE--LVAGGRLGKNIAAWNALVDMYVKC 260
           M + G+  D   V S++ AC  L+ +E GR +HE  ++ G R   +I    AL+ MY KC
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFR--TDIPLETALLQMYAKC 58

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           GS+++A+ VF+ M  +D+  W+S+I+ YA  G    A+ L++ M  EGV PN +T    L
Sbjct: 59  GSLDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACAL 118

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
             C+S+  L  GR++H   +   +  + +++ +L++MY KC+ +  + +VF     +   
Sbjct: 119 GGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVR 178

Query: 381 PWNAILAGCVHNGLARKAVELFRQM-LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
            + A+++  V  G   +A+ELF +M  VE +EPN  T  ++L A   L +L++   +H +
Sbjct: 179 SYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRH 238

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           L   GF + V V   L+ +Y KCGS   A K+F  +    ++++ W+ +IA Y  HG+ +
Sbjct: 239 LASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTA--RNVISWTSMIAAYAQHGNPQ 296

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
            A++LFK M    V+P+ V+F+SAL+AC+  G LDEG ++ + ++E H    + +  T +
Sbjct: 297 EALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQME--TSL 351

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           + +  R G LD+A  +   M  +   +   A++ A   HG 
Sbjct: 352 LSMYARCGSLDDARRVFNRMKTRDAFSC-NAMIAAFTQHGR 391


>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 191/543 (35%), Positives = 304/543 (55%), Gaps = 4/543 (0%)

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
           + +  +++ CTD    + G+++H  ++    +    + N L+++Y+ FG +  A ++FD 
Sbjct: 60  HQFSQILQECTDAGDLRTGMSVHTYLVKLNINGFILIWNKLLSLYLKFGHIHHAHQLFDT 119

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALV-VFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
           M    VVS+NT+IS   +N Y    LV ++  M K  V+P+  +   ++ AC  L  + +
Sbjct: 120 MPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGACDGLIALRL 179

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
             + H       L  N    ++LVD Y K   + +A   F+ + E D+V+W  MI+G A 
Sbjct: 180 RGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIMELDLVSWNIMIDGCAR 239

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           N    +A+ +F  M    VR +  T+ S++  CS    LK G   H   IK  L  E  +
Sbjct: 240 NNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAHETPI 299

Query: 351 ETALIDMYAKCNL-VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
             ALI MY+KC   V    ++F   S+   + W A+++G + N    +A+ LF++ML   
Sbjct: 300 YNALITMYSKCEKGVASPVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLG 359

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           V  ND + +S+LP Y  LA+L+Q   IH  +I+  F   + V+  LID+YSKCGSLE AH
Sbjct: 360 VRENDFSFSSILPVYGNLANLEQGKQIHARIIKSWFGLDLSVNNALIDMYSKCGSLEDAH 419

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
            +F  + +   D+V  + +I  YG HG G+ A+ +  EM   G+ P+ VTF   L+ACSH
Sbjct: 420 LVF--MKMGKHDVVSCTTMIMSYGQHGKGKEALEILAEMKSEGLVPDGVTFLGCLYACSH 477

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
           GGL++EG+ +F  M+E+H    + +H+ C+VD+LGRAGRL+EA + I  M ++    VW 
Sbjct: 478 GGLVEEGVRVFKIMIEDHNLKPKREHFACVVDMLGRAGRLNEAENFIDEMGIESDVLVWE 537

Query: 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
            LLGAC +HG + LGE +A+ + EL+P   G YVLL+ +Y+    W+D   VR+ +   G
Sbjct: 538 TLLGACRVHGEMVLGEKSAQKIMELQPGRHGPYVLLANIYAERGSWEDKVMVREKLVSHG 597

Query: 650 LRK 652
           L+K
Sbjct: 598 LKK 600



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/462 (26%), Positives = 218/462 (47%), Gaps = 6/462 (1%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           SL   +GH+ +   LFD M  R    +NT++    +N      L      ++  +  P++
Sbjct: 102 SLYLKFGHIHHAHQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNH 161

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T+  +I AC  L   +L    H   +  G   + FVG+ L+  Y    +++ A K F+ 
Sbjct: 162 ITFAGLIGACDGLIALRLRGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNE 221

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           + E  +VSWN +I G  +N   + A+ +F  MLK  V  D  ++ S++  C    +++ G
Sbjct: 222 IMELDLVSWNIMIDGCARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHG 281

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKC-GSVNEARLVFDRMSERDVVTWTSMINGYAL 290
              H       L      +NAL+ MY KC   V     +F  +SE ++++WT+MI+G+  
Sbjct: 282 MQFHGSAIKLGLAHETPIYNALITMYSKCEKGVASPVKIFGSISEPNIISWTAMISGFMQ 341

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           N     A+GLF+ M   GVR N  +  S+L    +L  L++G+ +HA  IK     ++ V
Sbjct: 342 NEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLEQGKQIHARIIKSWFGLDLSV 401

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
             ALIDMY+KC  ++ +  VF +  K   V    ++     +G  ++A+E+  +M  E +
Sbjct: 402 NNALIDMYSKCGSLEDAHLVFMKMGKHDVVSCTTMIMSYGQHGKGKEALEILAEMKSEGL 461

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAH 469
            P+  T    L A +    +++ + +   +I  +      E    ++D+  + G L  A 
Sbjct: 462 VPDGVTFLGCLYACSHGGLVEEGVRVFKIMIEDHNLKPKREHFACVVDMLGRAGRLNEAE 521

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGH---GETAVSLFKEM 508
               E+ I + D++VW  ++    +HG    GE +     E+
Sbjct: 522 NFIDEMGI-ESDVLVWETLLGACRVHGEMVLGEKSAQKIMEL 562


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 204/630 (32%), Positives = 319/630 (50%), Gaps = 97/630 (15%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G ++H +++  G  +  ++ N L+  Y   G ++ A  VFD M   S  SWNTLISGY K
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 190 -----------------------------NAYA--KEALVVFDWMLKSGVEPDCASVVSV 218
                                        N +     A+ +F  M+   V P   +V +V
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLG-------------------------------KNI 247
           L +C   + +++GR IH  V    LG                               KNI
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
           + WNAL+ +Y++ G    A   F++M +RD+V+W SMI+GY+  G    AL +F  M  E
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNE 268

Query: 308 -GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC----- 361
             ++P++ T+ S+LSAC++L  L  G+ +HA+ ++   E    V  ALI MYAK      
Sbjct: 269 PSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEI 328

Query: 362 -----------NL-----------------VKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
                      NL                 VK + ++F +   +  V W A++ G V NG
Sbjct: 329 ARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNG 388

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
           L   A+ELFR M+ E  EPN  TL ++L   + L  L+    IH   I+ G  S   V+ 
Sbjct: 389 LWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTN 448

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            LI +Y+K G++  A ++F ++P   K+IV W+ +I     HG G+ A++LF+ M+  G+
Sbjct: 449 ALIAMYAKTGNINVAKRVF-DLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGM 507

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
           +P+ +T+   L AC+H GL+++G   +N M E H+      HY C++DL GRAG L EAY
Sbjct: 508 KPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAY 567

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633
             I +MP++P +  WG+LL +C IH N +L +VAA+ L  ++P N G Y+ L+ +YSA  
Sbjct: 568 LFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACG 627

Query: 634 RWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +W++A   R +M ++G+RK    S I ++N
Sbjct: 628 KWENAAQTRKLMKDRGVRKEKGISWIHIKN 657


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 209/660 (31%), Positives = 343/660 (51%), Gaps = 21/660 (3%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSG--PLFTHLRSSLVRAYGHVS---NVRILFDEMSE 72
           +L+Q+ A  +++   +++H+  +     P    L + +V  Y H     + +  FD + +
Sbjct: 48  RLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDAKAAFDALEQ 107

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           R+ + +  ++  +A +G S ++L+    M + G   PD  T+   + +C D    + GI 
Sbjct: 108 RNLYSWTGLVAAFAISGQSKETLRALERMRQDG-VRPDAVTFITALGSCGDPESLRDGIR 166

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE-HSVVSWNTLISGYFKNA 191
           +H  V+ +  ++D  V N L+ MY   G +  A++VF  M    +V+SW+ +   +  + 
Sbjct: 167 IHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHG 226

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
              EAL  F +ML  G++   +++V++L AC     ++ GR+IH  +A       +   N
Sbjct: 227 NVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVAN 286

Query: 252 ALVDMYVKCGSVNEARLVFDRMSE--RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
           A++ MY +CG+V EAR VFD M E  RDVV+W  M++ Y  N   ++A+ L+Q MQ    
Sbjct: 287 AVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQL--- 343

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
           R + +T  SLLSACSS   +  GR LH   +   LE  VIV  AL+ MYAKC     +  
Sbjct: 344 RADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARA 403

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML-------VEVVEPNDATLNSLLP 422
           VF +  ++  + W  I++  V   L  +A  LF+QML        + V+P+     ++L 
Sbjct: 404 VFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILN 463

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A A ++ L+Q   +       G  S   V T ++++Y KCG +E   +IF  +  +  D+
Sbjct: 464 ACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSR-PDV 522

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
            +W+ +IA Y   G    A+ LF  M   GV+P+  +F S L ACSH GL D+G   F  
Sbjct: 523 QLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTS 582

Query: 543 MLENHQTCSRA-DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
           M   ++  +R   H+ C+ DLLGR GRL EA + +  +P+KP    W +LL AC  H ++
Sbjct: 583 MTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDL 642

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +  +  A  L  LEP     YV LS +Y+ +++W     VR  M E+G++K    S IE+
Sbjct: 643 KRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEI 702



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 175/326 (53%), Gaps = 5/326 (1%)

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-VAGGRLGKNIAAWNALVDMYVKCGSV 263
           K  V  + A+   +L  C   + +  GR IH L V    L  N+   N +V MY  C S 
Sbjct: 36  KQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSP 95

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
            +A+  FD + +R++ +WT ++  +A++G  +  L   + M+ +GVRP+++T  + L +C
Sbjct: 96  GDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSC 155

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
                L+ G  +H   +   LE +  V  AL++MY KC  +  + +VFA+  + + V   
Sbjct: 156 GDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISW 215

Query: 384 AILAGC-VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           +I+AG    +G   +A+  FR ML+  ++   + + ++L A +  A +Q    IH  +  
Sbjct: 216 SIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIAL 275

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
            GF S + V+  ++ +Y +CG++E A K+F  +    +D+V W+++++ Y  +  G+ A+
Sbjct: 276 SGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAI 335

Query: 503 SLFKEMVQSGVQPNEVTFTSALHACS 528
            L++ M    ++ ++VT+ S L ACS
Sbjct: 336 QLYQRM---QLRADKVTYVSLLSACS 358



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 165/383 (43%), Gaps = 39/383 (10%)

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN-LECEVIVETALIDMYAKCN 362
           ++ + VR  + T   LL  C+    L  GR +H+  +K N L   +I+   ++ MYA C+
Sbjct: 34  LEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCD 93

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
               +   F    ++    W  ++A    +G +++ +    +M  + V P+  T  + L 
Sbjct: 94  SPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALG 153

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           +      L+  + IH  ++        +VS  L+++Y KCGSL  A ++F+++  + +++
Sbjct: 154 SCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME-RTRNV 212

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG------ 536
           + WS++   + +HG+   A+  F+ M+  G++  +    + L ACS   L+ +G      
Sbjct: 213 ISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSC 272

Query: 537 ---------LDLFNFMLENHQTCSRADHYTCIVDLLGRA-----------------GRLD 570
                    L + N ++  +  C   +    + D +  A                  R  
Sbjct: 273 IALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGK 332

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENP---GNYVLLSK 627
           +A  L + M L+     + +LL AC    +V LG V  K +   E E     GN   L  
Sbjct: 333 DAIQLYQRMQLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNA--LVS 390

Query: 628 LYSAVRRWKDAENVRDVMDEKGL 650
           +Y+      +A  V D M+++ +
Sbjct: 391 MYAKCGSHTEARAVFDKMEQRSI 413


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 192/485 (39%), Positives = 271/485 (55%), Gaps = 4/485 (0%)

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WNT +    K     +AL ++  ML+ G  P+  +    L +C  L    +G   H  + 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR--MSERDVVTWTSMINGYALNGDVRNA 297
                        L+ MY K   V+ AR VF+    S +  V + ++++GY  N     A
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           + LF+ M  EGV  NS+T+  L+ AC S   L+ G SLH  T+K   + +V V    I M
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITM 196

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y KC  V  + ++F     K  + WNA+++G   NGLA   +EL+R M +  V P+  TL
Sbjct: 197 YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTL 256

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
             +L + A L        +   +   GF S   ++  LI++Y++CG+L  A  +F  +P 
Sbjct: 257 VGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMP- 315

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            ++ +V W+ II GYGMHGHGE AV LFKEM++SG++P+   F   L ACSH GL D+GL
Sbjct: 316 -ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGL 374

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
           + F  M  N+Q     +HY+C+VDLLGRAGRL EA  LI +MP+KP  AVWGALLGAC I
Sbjct: 375 EYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKI 434

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           H NVEL E+A + + ELEPEN G YVLLS +YS     K    +R +M EK L+K P  S
Sbjct: 435 HKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCS 494

Query: 658 LIEVR 662
            +E++
Sbjct: 495 YVELK 499



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/447 (28%), Positives = 227/447 (50%), Gaps = 9/447 (2%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +NT ++  A+      +L ++  MLR G+  P+ +T+P  +K+C  L+   LG   HG++
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGD-RPNAFTFPFALKSCAALSLPILGSQFHGQI 75

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS---VVSWNTLISGYFKNAYAK 194
              G   + FV   LI+MY     V  ARKVF+  + HS    V +N L+SGY  N+   
Sbjct: 76  TKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENF-HSRKLTVCYNALVSGYVSNSKCS 134

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           EA+++F  M + GV  +  +++ ++PAC     +E+G  +H          +++  N  +
Sbjct: 135 EAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFI 194

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
            MY+KCGSVN A+ +FD M  + +++W +M++GYA NG   N L L++ M   GV P+ +
Sbjct: 195 TMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPV 254

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T+  +LS+C++L     G  +              +  ALI+MYA+C  +  +  VF   
Sbjct: 255 TLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGM 314

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
            ++  V W AI+ G   +G    AV+LF++M+   +EP+      +L A +      Q +
Sbjct: 315 PERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGL 374

Query: 435 NIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
                + R Y      E  + ++D+  + G L+ A  +   +PIK  D  VW  ++    
Sbjct: 375 EYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIK-PDGAVWGALLGACK 433

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTF 520
           +H + E A   F+ +++  ++P  + +
Sbjct: 434 IHKNVELAELAFERVIE--LEPENIGY 458



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 125/416 (30%), Positives = 197/416 (47%), Gaps = 18/416 (4%)

Query: 6   HHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAYGH---VS 61
           H   P        L    A +  I G+ Q H  I   G +F   +++ L+  Y     V 
Sbjct: 43  HGDRPNAFTFPFALKSCAALSLPILGS-QFHGQITKVGCVFEPFVQTGLISMYCKGSLVD 101

Query: 62  NVRILFDE--MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           N R +F+E   S + +  YN ++  Y  N    +++ +F  M   G    ++ T   +I 
Sbjct: 102 NARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEG-VPVNSVTLLGLIP 160

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           AC      +LG +LH   L  GFD D  V NC I MYM  G V  A+K+FD M    ++S
Sbjct: 161 ACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLIS 220

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WN ++SGY +N  A   L ++  M  +GV PD  ++V VL +C  L    +G  +   + 
Sbjct: 221 WNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQ 280

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
                 N    NAL++MY +CG++ +A+ VFD M ER +V+WT++I GY ++G    A+ 
Sbjct: 281 ASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQ 340

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE--TALIDM 357
           LF+ M   G+ P+      +LSACS      +G   +   +K+N + E   E  + ++D+
Sbjct: 341 LFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLE-YFKMMKRNYQLEPGPEHYSCMVDL 399

Query: 358 YAKCNLVKLSFQVFARTS-KKKTVPWNAILAGC-VHNGLARKAVELFRQMLVEVVE 411
             +   +K +  +      K     W A+L  C +H     K VEL       V+E
Sbjct: 400 LGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIH-----KNVELAELAFERVIE 450



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 1/204 (0%)

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
           + PWN  L          +A+ L+ QML     PN  T    L + A L+        H 
Sbjct: 14  STPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHG 73

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
            + + G +    V TGLI +Y K   +++A K+F E     K  V ++ +++GY  +   
Sbjct: 74  QITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKC 133

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
             AV LF++M + GV  N VT    + AC     L+ G  L    L+ +   S      C
Sbjct: 134 SEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLK-YGFDSDVSVVNC 192

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLK 582
            + +  + G ++ A  L   MP+K
Sbjct: 193 FITMYMKCGSVNYAQKLFDEMPVK 216


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 181/469 (38%), Positives = 275/469 (58%), Gaps = 4/469 (0%)

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALV 254
            L   D + +  + PD      +L  C  L ++E GR++H  LV    L  ++   N +V
Sbjct: 71  GLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIV 130

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           +MY KCG +++AR +FD M  +D+VTWT++I G++ N   R+AL LF  M   G +PN  
Sbjct: 131 NMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHF 190

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T+ SLL A  S + L  G  LHA+ +K   +  V V +AL+DMYA+C  +  +   F   
Sbjct: 191 TLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGM 250

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
             K  V WNA+++G    G    A+ L  +M  +  +P   T +S+L A A +  L+Q  
Sbjct: 251 PTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGK 310

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            +H ++I+ G   +  +   L+D+Y+K GS++ A ++F  + +K  D+V W+ ++ G   
Sbjct: 311 WVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VK-PDVVSWNTMLTGCAQ 368

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           HG G+  +  F++M++ G++PNE++F   L ACSH GLLDEGL  F  M + ++      
Sbjct: 369 HGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVP 427

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HY   VDLLGR G LD A   IR MP++PT AVWGALLGAC +H N+ELG  AA+  FEL
Sbjct: 428 HYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFEL 487

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +P + G  +LLS +Y++  RW+D   VR +M E G++K PA S +E+ N
Sbjct: 488 DPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIEN 536



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 123/405 (30%), Positives = 212/405 (52%), Gaps = 2/405 (0%)

Query: 99  LGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYM 157
           L +++ G   PD   Y  ++K CT L   + G  +H  ++ + F D    + N ++ MY 
Sbjct: 75  LDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYA 134

Query: 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVS 217
             G +  AR++FD M    +V+W  LI+G+ +N   ++AL++F  ML+ G +P+  ++ S
Sbjct: 135 KCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSS 194

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           +L A G    ++ G  +H          ++   +ALVDMY +CG ++ A+L FD M  + 
Sbjct: 195 LLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKS 254

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
            V+W ++I+G+A  G+  +AL L   MQ +  +P   T  S+LSAC+S+  L++G+ +HA
Sbjct: 255 EVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHA 314

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
             IK  L+    +   L+DMYAK   +  + +VF R  K   V WN +L GC  +GL ++
Sbjct: 315 HMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKE 374

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
            ++ F QML   +EPN+ +   +L A +    L + +     + +Y     V      +D
Sbjct: 375 TLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVD 434

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
           +  + G L+ A +   E+PI +    VW  ++    MH + E  V
Sbjct: 435 LLGRVGLLDRAERFIREMPI-EPTAAVWGALLGACRMHKNMELGV 478



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 117/401 (29%), Positives = 195/401 (48%), Gaps = 14/401 (3%)

Query: 14  HLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHL--RSSLVRAY---GHVSNVRILFD 68
           +L  KL+++      +   + +HA ++ S  L  HL  ++ +V  Y   G + + R +FD
Sbjct: 88  NLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFD 147

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
           EM  +    +  ++  ++QN    D+L +F  MLRLG + P+++T   ++KA        
Sbjct: 148 EMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLG-FQPNHFTLSSLLKASGSEHGLD 206

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
            G  LH   L  G+    +VG+ L+ MY   G + AA+  FD M   S VSWN LISG+ 
Sbjct: 207 PGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHA 266

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           +    + AL +   M +   +P   +  SVL AC  +  +E G+ +H  +    L     
Sbjct: 267 RKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAF 326

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             N L+DMY K GS+++A+ VFDR+ + DVV+W +M+ G A +G  +  L  F+ M   G
Sbjct: 327 IGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIG 386

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           + PN ++   +L+ACS    L  G        K  +E +V      +D+  +  L+  + 
Sbjct: 387 IEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAE 446

Query: 369 QVFARTSKKKTVP-WNAILAGC-VHNGL------ARKAVEL 401
           +       + T   W A+L  C +H  +      A +A EL
Sbjct: 447 RFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFEL 487


>gi|357484403|ref|XP_003612489.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513824|gb|AES95447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 955

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 199/622 (31%), Positives = 326/622 (52%), Gaps = 12/622 (1%)

Query: 46  FTHLRSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGML 102
           F  + +SL+  Y     V +   +F EM+ +    +N +M+ YA N   H++  + + M 
Sbjct: 337 FVSVANSLISLYSQCEAVDVAETVFREMAYKDIVSWNAMMEGYASNENIHEAFDLMVEMQ 396

Query: 103 RLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF-VGNCLIAMYMNFGE 161
             G + PD  T   ++  C +L   + G  +HG  +      D   + N LI MY     
Sbjct: 397 TTGCFQPDIVTLTTMLPLCAELMLYREGRTIHGYAIRRHMVPDHLPLRNGLIDMYSKCNV 456

Query: 162 VKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPA 221
           V+ A  +F +  +  +VSWN +ISGY +N Y ++A  +F  +L  G     ++V ++L +
Sbjct: 457 VEKAELLFHSTAQIDLVSWNAMISGYSQNKYYEKAQNLFKELLCCGQNCSSSTVFAILSS 516

Query: 222 CGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-RDVVT 280
           C     +  G+ +H          +    N+L+ MY+  G +     +    S   D+ +
Sbjct: 517 CNSANSLNFGKSVHIWQLKSGFLNHTLLVNSLMQMYINSGDLTSGFSILQENSSIADIAS 576

Query: 281 WTSMINGYALNGDVRNALGLFQLM-QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWT 339
           W ++I G       + AL  F LM Q      +S+T+ ++LSA +++  L +G+SLH+  
Sbjct: 577 WNTIIVGCVRGDQFQEALETFMLMRQGPSFNYDSITLVNVLSAVANIELLNQGKSLHSLA 636

Query: 340 IKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAV 399
           +K     +  V+ +LI MY +C  +  + +VF   S      WN +++   HN  +R+A+
Sbjct: 637 LKSPFGSDTRVQNSLITMYDRCRDINSARKVFKFHSISNLCTWNCMISALSHNKESREAL 696

Query: 400 ELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459
           ELFR +     +PN+ T+ S+L A   +  L     +H Y  RYG+     +S  L+D+Y
Sbjct: 697 ELFRHL---QFKPNEFTIVSVLSACTRIGVLIHGKQVHGYTFRYGYQQNSFISAALVDLY 753

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
           S CG L++A K+F       K    W+ +IA YG HG+GE A+ LF EM   G++  + T
Sbjct: 754 STCGRLDNAVKVFRH---SQKSESAWNSMIAAYGNHGNGEKAIELFHEMCDLGIKVTKST 810

Query: 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
           F S L ACSH GL+++GL  +  MLE +     A+H   +V++L R+GR+DEAY   + +
Sbjct: 811 FVSLLSACSHSGLVNQGLQYYECMLEKYGIKPEAEHQVYVVNMLARSGRIDEAYQFTKGL 870

Query: 580 PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAE 639
               +  VWG LL  C  HG +ELG+  A+ LFE+EP+N G Y+ L+ +Y A   WKDA 
Sbjct: 871 QSNASSGVWGMLLSVCNYHGELELGKKVAEKLFEMEPQNVGYYISLANMYVAAGSWKDAT 930

Query: 640 NVRDVMDEKGLRKAPAHSLIEV 661
           ++R  + ++GLRK   +SLI+V
Sbjct: 931 DLRQYIHDQGLRKCAGYSLIDV 952



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 176/622 (28%), Positives = 287/622 (46%), Gaps = 34/622 (5%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAYGHVSNV---- 63
              TT L++  V   +  K+    + +H   I SG L    L ++L+  Y    +V    
Sbjct: 196 FDSTTLLLV--VSTLSHLKNFGQGRVIHCVSIKSGMLVDISLCNALINMYAKCGDVNSSD 253

Query: 64  -RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
              LF+EM  +    +N++M+    NG    SL  F  M    E   D+ +    I AC+
Sbjct: 254 SECLFEEMEYKDVVSWNSIMRGCLYNGDLEKSLCYFRRM-NFSEERADHVSLSCAISACS 312

Query: 123 DLAWRKLGIALHGRVLITGFDMDTF--VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
            L     G  +HG+ +  G+  ++F  V N LI++Y     V  A  VF  M    +VSW
Sbjct: 313 SLGELAFGECIHGQGIKLGYKDNSFVSVANSLISLYSQCEAVDVAETVFREMAYKDIVSW 372

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGV-EPDCASVVSVLPACGYLKEIEMGRMIHEL-V 238
           N ++ GY  N    EA  +   M  +G  +PD  ++ ++LP C  L     GR IH   +
Sbjct: 373 NAMMEGYASNENIHEAFDLMVEMQTTGCFQPDIVTLTTMLPLCAELMLYREGRTIHGYAI 432

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               +  ++   N L+DMY KC  V +A L+F   ++ D+V+W +MI+GY+ N     A 
Sbjct: 433 RRHMVPDHLPLRNGLIDMYSKCNVVEKAELLFHSTAQIDLVSWNAMISGYSQNKYYEKAQ 492

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
            LF+ +   G   +S T+ ++LS+C+S   L  G+S+H W +K       ++  +L+ MY
Sbjct: 493 NLFKELLCCGQNCSSSTVFAILSSCNSANSLNFGKSVHIWQLKSGFLNHTLLVNSLMQMY 552

Query: 359 AKCNLVKLSFQVFARTSKKKTV-PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA-T 416
                +   F +    S    +  WN I+ GCV     ++A+E F  M        D+ T
Sbjct: 553 INSGDLTSGFSILQENSSIADIASWNTIIVGCVRGDQFQEALETFMLMRQGPSFNYDSIT 612

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           L ++L A A +  L Q  ++H   ++  F S   V   LI +Y +C  + SA K+F    
Sbjct: 613 LVNVLSAVANIELLNQGKSLHSLALKSPFGSDTRVQNSLITMYDRCRDINSARKVFKFHS 672

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           I   ++  W+ +I+    +     A+ LF+ +     +PNE T  S L AC+  G+L  G
Sbjct: 673 I--SNLCTWNCMISALSHNKESREALELFRHL---QFKPNEFTIVSVLSACTRIGVLIHG 727

Query: 537 LDL----FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
             +    F +  + +   S A     +VDL    GRLD A  + R    + + + W +++
Sbjct: 728 KQVHGYTFRYGYQQNSFISAA-----LVDLYSTCGRLDNAVKVFRHS--QKSESAWNSMI 780

Query: 593 GACVIHGNVELGEVAAKWLFEL 614
            A   HGN   GE A +   E+
Sbjct: 781 AAYGNHGN---GEKAIELFHEM 799



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 164/645 (25%), Positives = 293/645 (45%), Gaps = 49/645 (7%)

Query: 37  AFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLK 96
           A++ TS  LFT     L    G  ++ R+LF+ +  R    +N ++    +N     +++
Sbjct: 130 AYLPTSTSLFT-----LYSKAGDFTSSRVLFEHIHNRDVIAWNAIISASLENKCYRTAVE 184

Query: 97  MFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMY 156
            F  M++  +   D+ T  +V+   + L     G  +H   + +G  +D  + N LI MY
Sbjct: 185 FFQKMIK-DQTRFDSTTLLLVVSTLSHLKNFGQGRVIHCVSIKSGMLVDISLCNALINMY 243

Query: 157 MNFGEVKAARK--VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
              G+V ++    +F+ M    VVSWN+++ G   N   +++L  F  M  S    D  S
Sbjct: 244 AKCGDVNSSDSECLFEEMEYKDVVSWNSIMRGCLYNGDLEKSLCYFRRMNFSEERADHVS 303

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKN----IAAWNALVDMYVKCGSVNEARLVF 270
           +   + AC  L E+  G  IH    G +LG      ++  N+L+ +Y +C +V+ A  VF
Sbjct: 304 LSCAISACSSLGELAFGECIHG--QGIKLGYKDNSFVSVANSLISLYSQCEAVDVAETVF 361

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV-RPNSLTIGSLLSACSSLYYL 329
             M+ +D+V+W +M+ GYA N ++  A  L   MQ  G  +P+ +T+ ++L  C+ L   
Sbjct: 362 REMAYKDIVSWNAMMEGYASNENIHEAFDLMVEMQTTGCFQPDIVTLTTMLPLCAELMLY 421

Query: 330 KRGRSLHAWTIKQNLECEVI-VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           + GR++H + I++++  + + +   LIDMY+KCN+V+ +  +F  T++   V WNA+++G
Sbjct: 422 REGRTIHGYAIRRHMVPDHLPLRNGLIDMYSKCNVVEKAELLFHSTAQIDLVSWNAMISG 481

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
              N    KA  LF+++L      + +T+ ++L +      L    ++H + ++ GFL+ 
Sbjct: 482 YSQNKYYEKAQNLFKELLCCGQNCSSSTVFAILSSCNSANSLNFGKSVHIWQLKSGFLNH 541

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             +   L+ +Y   G L S   I  E      DI  W+ II G       + A+  F  M
Sbjct: 542 TLLVNSLMQMYINSGDLTSGFSILQENS-SIADIASWNTIIVGCVRGDQFQEALETFMLM 600

Query: 509 VQS-GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN--------------------- 546
            Q      + +T  + L A ++  LL++G  L +  L++                     
Sbjct: 601 RQGPSFNYDSITLVNVLSAVANIELLNQGKSLHSLALKSPFGSDTRVQNSLITMYDRCRD 660

Query: 547 ---------HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
                      + S    + C++  L       EA +L R +  KP      ++L AC  
Sbjct: 661 INSARKVFKFHSISNLCTWNCMISALSHNKESREALELFRHLQFKPNEFTIVSVLSACTR 720

Query: 598 HGNVELGEVAAKWLFEL-EPENPGNYVLLSKLYSAVRRWKDAENV 641
            G +  G+    + F     +N      L  LYS   R  +A  V
Sbjct: 721 IGVLIHGKQVHGYTFRYGYQQNSFISAALVDLYSTCGRLDNAVKV 765



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 140/490 (28%), Positives = 238/490 (48%), Gaps = 21/490 (4%)

Query: 121 CTDLAWRKLGI----ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           C  L+  K  I     +H   L TG          L  +Y   G+  ++R +F+ +    
Sbjct: 103 CIKLSLEKPNIFTATVVHCAALKTGALAYLPTSTSLFTLYSKAGDFTSSRVLFEHIHNRD 162

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V++WN +IS   +N   + A+  F  M+K     D  +++ V+    +LK    GR+IH 
Sbjct: 163 VIAWNAIISASLENKCYRTAVEFFQKMIKDQTRFDSTTLLLVVSTLSHLKNFGQGRVIHC 222

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVN--EARLVFDRMSERDVVTWTSMINGYALNGDV 294
           +     +  +I+  NAL++MY KCG VN  ++  +F+ M  +DVV+W S++ G   NGD+
Sbjct: 223 VSIKSGMLVDISLCNALINMYAKCGDVNSSDSECLFEEMEYKDVVSWNSIMRGCLYNGDL 282

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA- 353
             +L  F+ M F   R + +++   +SACSSL  L  G  +H   IK   +    V  A 
Sbjct: 283 EKSLCYFRRMNFSEERADHVSLSCAISACSSLGELAFGECIHGQGIKLGYKDNSFVSVAN 342

Query: 354 -LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE-VVE 411
            LI +Y++C  V ++  VF   + K  V WNA++ G   N    +A +L  +M      +
Sbjct: 343 SLISLYSQCEAVDVAETVFREMAYKDIVSWNAMMEGYASNENIHEAFDLMVEMQTTGCFQ 402

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL-SVVEVSTGLIDIYSKCGSLESAHK 470
           P+  TL ++LP  A L   ++   IH Y IR   +   + +  GLID+YSKC  +E A  
Sbjct: 403 PDIVTLTTMLPLCAELMLYREGRTIHGYAIRRHMVPDHLPLRNGLIDMYSKCNVVEKAEL 462

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           +F        D+V W+ +I+GY  + + E A +LFKE++  G   +  T  + L +C+  
Sbjct: 463 LFHSTA--QIDLVSWNAMISGYSQNKYYEKAQNLFKELLCCGQNCSSSTVFAILSSCNSA 520

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR----AGRLDEAYDLIRTMPLKPTHA 586
             L+ G  +  + L+     S   ++T +V+ L +    +G L   + +++        A
Sbjct: 521 NSLNFGKSVHIWQLK-----SGFLNHTLLVNSLMQMYINSGDLTSGFSILQENSSIADIA 575

Query: 587 VWGALLGACV 596
            W  ++  CV
Sbjct: 576 SWNTIIVGCV 585



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 211/462 (45%), Gaps = 30/462 (6%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPL-FTHLRSSLVRAYGHVSNVRILFDEM 70
           ++  V  ++    +  S+   K +H + + SG L  T L +SL++ Y +  ++   F  +
Sbjct: 506 SSSTVFAILSSCNSANSLNFGKSVHIWQLKSGFLNHTLLVNSLMQMYINSGDLTSGFSIL 565

Query: 71  SERSSFL----YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
            E SS      +NT++    +     ++L+ F+ M +   +N D+ T   V+ A  ++  
Sbjct: 566 QENSSIADIASWNTIIVGCVRGDQFQEALETFMLMRQGPSFNYDSITLVNVLSAVANIEL 625

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
              G +LH   L + F  DT V N LI MY    ++ +ARKVF      ++ +WN +IS 
Sbjct: 626 LNQGKSLHSLALKSPFGSDTRVQNSLITMYDRCRDINSARKVFKFHSISNLCTWNCMISA 685

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
              N  ++EAL +F  +     +P+  ++VSVL AC  +  +  G+ +H         +N
Sbjct: 686 LSHNKESREALELFRHL---QFKPNEFTIVSVLSACTRIGVLIHGKQVHGYTFRYGYQQN 742

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
                ALVD+Y  CG ++ A  VF R S++    W SMI  Y  +G+   A+ LF  M  
Sbjct: 743 SFISAALVDLYSTCGRLDNAVKVF-RHSQKSESAWNSMIAAYGNHGNGEKAIELFHEMCD 801

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRS-----LHAWTIKQNLECEVIVETALIDMYAKC 361
            G++    T  SLLSACS    + +G       L  + IK   E +V V    ++M A+ 
Sbjct: 802 LGIKVTKSTFVSLLSACSHSGLVNQGLQYYECMLEKYGIKPEAEHQVYV----VNMLARS 857

Query: 362 NLVKLSFQVFAR--TSKKKTVPWNAILAGCVHNG---LARKAVELFRQMLVEVVEPNDAT 416
             +  ++Q F +   S   +  W  +L+ C ++G   L +K  E     L E+   N   
Sbjct: 858 GRIDEAYQ-FTKGLQSNASSGVWGMLLSVCNYHGELELGKKVAE----KLFEMEPQNVGY 912

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
             SL   Y      + A ++  Y+   G       S  LID+
Sbjct: 913 YISLANMYVAAGSWKDATDLRQYIHDQGLRKCAGYS--LIDV 952


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 184/569 (32%), Positives = 319/569 (56%), Gaps = 38/569 (6%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYM---NFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           +H +++ TG     +  + L+   +   NF  +  A  VF+ + E +++ WNT+  G+  
Sbjct: 21  IHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 80

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH--------EL---- 237
           ++    A+ ++  M+  G+ P+  +   +L +C  LK  + G+ IH        EL    
Sbjct: 81  SSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYV 140

Query: 238 -------------------VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
                              V  G   +++ ++ AL+  Y   G +  A+ +FD +  +DV
Sbjct: 141 HTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDV 200

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           V+W ++I+GYA  G+ + AL LF+ M    V+P+  T+ +++SAC+    ++ GR +H+W
Sbjct: 201 VSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSW 260

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
                L   + +  ALID+Y+KC  V+ +  +F   S K  + WN ++ G  H  L ++A
Sbjct: 261 IDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEA 320

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY--GFLSVVEVSTGLI 456
           + LF++ML     PND T+ S+LPA A L  +     IH Y+ +   G  +   + T LI
Sbjct: 321 LLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLI 380

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
           D+Y+KCG +E+AH++F+ +    + +   + +I G+ MHG    A  +F  M ++G++P+
Sbjct: 381 DMYAKCGDIEAAHQVFNSM--HHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPD 438

Query: 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
           ++TF   L ACSH G+LD G  +F  M +N++   + +HY C++DLLG  G   EA ++I
Sbjct: 439 DITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMI 498

Query: 577 RTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWK 636
            TM ++P   +W +LL AC +HGNVELGE  A+ L ++EPENPG+YVLLS +Y+   RW 
Sbjct: 499 NTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWN 558

Query: 637 DAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           +  N+R ++++KG++K P  S IE+ +++
Sbjct: 559 EVANIRALLNDKGMKKVPGCSSIEIDSVV 587



 Score =  237 bits (605), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 149/484 (30%), Positives = 251/484 (51%), Gaps = 38/484 (7%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F+ + E +  ++NT+ + +A +     ++K+++ M+ LG   P++YT+P ++K+C  L 
Sbjct: 59  VFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLL-PNSYTFPFLLKSCAKLK 117

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA-------------- 171
             K G  +HG VL  G+++D +V   LI+MY+  G  K A KVFD               
Sbjct: 118 VSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALIT 177

Query: 172 -------------MWEH----SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
                        M++      VVSWN +ISGY      KEAL +F  M+K+ V+PD ++
Sbjct: 178 GYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDEST 237

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           +V+V+ AC     I++GR +H  +    LG N+   NAL+D+Y KCG V  A  +F  +S
Sbjct: 238 MVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLS 297

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
            +DV++W +MI GY      + AL LFQ M   G  PN +T+ S+L AC+ L  +  GR 
Sbjct: 298 NKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRW 357

Query: 335 LHAWTIK--QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           +H +  K  + +     + T+LIDMYAKC  ++ + QVF     +     NA++ G   +
Sbjct: 358 IHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMH 417

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEV 451
           G A  A ++F +M    +EP+D T   LL A +    L     I   + + Y     +E 
Sbjct: 418 GRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEH 477

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
              +ID+    G  + A ++ + + + + D V+W  ++    MHG+ E   S  +++++ 
Sbjct: 478 YGCMIDLLGHLGLFKEAEEMINTMTM-EPDGVIWCSLLKACKMHGNVELGESFAQKLIK- 535

Query: 512 GVQP 515
            ++P
Sbjct: 536 -IEP 538



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 200/415 (48%), Gaps = 11/415 (2%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++L+  Y   G++ + + +FDE+  +    +N ++  YA  G + ++L +F  M++    
Sbjct: 173 TALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKT-NV 231

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PD  T   V+ AC      +LG  +H  +   G   +  + N LI +Y   GEV+ A  
Sbjct: 232 KPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACG 291

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F  +    V+SWNT+I GY      KEAL++F  ML+SG  P+  +++S+LPAC  L  
Sbjct: 292 LFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGA 351

Query: 228 IEMGRMIHELVAGGRLGKNIAA--WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           I+ GR IH  +     G   A+    +L+DMY KCG +  A  VF+ M  R +    +MI
Sbjct: 352 IDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMI 411

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
            G+A++G    A  +F  M+  G+ P+ +T   LLSACS    L  GR +   ++ QN +
Sbjct: 412 FGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFR-SMTQNYK 470

Query: 346 CEVIVE--TALIDMYAKCNLVKLSFQVF-ARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
               +E    +ID+     L K + ++    T +   V W ++L  C  +G      E F
Sbjct: 471 ITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELG-ESF 529

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
            Q L+++   N  +   L   YA      +  NI   L   G   V   S+  ID
Sbjct: 530 AQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEID 584



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 157/347 (45%), Gaps = 46/347 (13%)

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID---MYAKCNLVKLSFQVFART 374
           SLL  C +L  L   R +HA  IK  L       + L++   +    + +  +  VF   
Sbjct: 7   SLLHNCKTLQSL---RIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETI 63

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
            +   + WN +  G   +     A++L+  M+   + PN  T   LL + A L   ++  
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQ 123

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGS------------------------------ 464
            IH ++++ G+   + V T LI +Y K G                               
Sbjct: 124 QIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRG 183

Query: 465 -LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            +ESA K+F EIP+  KD+V W+ II+GY   G+ + A+ LFKEM+++ V+P+E T  + 
Sbjct: 184 YIESAQKMFDEIPV--KDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTV 241

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           + AC+  G +  G  + ++ +++H   S       ++DL  + G ++ A  L + +  K 
Sbjct: 242 VSACAQSGSIQLGRQVHSW-IDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKD 300

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFEL--EPENPGNYVLLSKL 628
             + W  ++G    + ++ L + A     E+    ENP +  +LS L
Sbjct: 301 VIS-WNTMIGG---YTHLNLYKEALLLFQEMLRSGENPNDVTMLSIL 343


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  348 bits (892), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 189/570 (33%), Positives = 305/570 (53%), Gaps = 43/570 (7%)

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
           R++  A+ GR L+TG        N L++     G V+   ++F ++ +   VS+N L++G
Sbjct: 66  RRVFDAMPGRNLVTG--------NSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAG 117

Query: 187 YFKNAYAKEALVVFDWMLK--SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           + +      A   +  +L+  +GV P   ++  V+     L +  +GR +H  +     G
Sbjct: 118 FSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFG 177

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMS------------------------------ 274
                 + LVDMY K G + +AR VFD M                               
Sbjct: 178 AYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAI 237

Query: 275 -ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
            ERD +TWT+M+ G   NG    AL +F+ M+ EGV  +  T GS+L+AC +L  L+ G+
Sbjct: 238 EERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGK 297

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            +HA+  +   E  V V +AL+DMY+KC  V+L+  VF R   K  + W A++ G   NG
Sbjct: 298 QIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNG 357

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
              +AV +F +M  + ++P+D TL S++ + A LA L++    HC  +  G    V VS 
Sbjct: 358 CGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSN 417

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            L+ +Y KCGS+E AH++F E+   D+  V W+ ++ GY   G  +  + LF++M+  GV
Sbjct: 418 ALVTLYGKCGSIEDAHRLFDEMSFHDQ--VSWTALVMGYAQFGKAKETIDLFEKMLSKGV 475

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
           +P+ VTF   L ACS  GL+D+G   F+ M ++H      DHYTC++DL  R+G L +A 
Sbjct: 476 KPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAE 535

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633
           + I+ MP  P    W  LL AC + G++E+G+ AA+ L +L+P+NP +YVLL  ++++  
Sbjct: 536 EFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKG 595

Query: 634 RWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            W D   +R  M ++ ++K P  S I+ +N
Sbjct: 596 EWNDVAKLRRGMRDRQVKKEPGCSWIKYKN 625



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 152/555 (27%), Positives = 267/555 (48%), Gaps = 43/555 (7%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFI----ITSGPLFTHLRSSLVRAYGHVSNVRI 65
           P  T+L+  L+  YA++  +   +++   +    + +G     L S+L RA G V ++  
Sbjct: 43  PSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTG---NSLLSALARA-GLVRDMER 98

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR-LGEYNPDNYTYPIVIKACTDL 124
           LF  + +R +  YN ++  +++ GA   +   ++ +LR      P   T   V+   + L
Sbjct: 99  LFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASAL 158

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD-------------- 170
             R LG  +H ++L  GF    F G+ L+ MY   G +  AR+VFD              
Sbjct: 159 GDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMI 218

Query: 171 -----------------AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCA 213
                            A+ E   ++W T+++G  +N    EAL VF  M   GV  D  
Sbjct: 219 TGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQY 278

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           +  S+L ACG L  +E G+ IH  +       N+   +ALVDMY KC SV  A  VF RM
Sbjct: 279 TFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRM 338

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
             +++++WT+MI GY  NG    A+ +F  MQ +G++P+  T+GS++S+C++L  L+ G 
Sbjct: 339 MWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGA 398

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
             H   +   L   V V  AL+ +Y KC  ++ + ++F   S    V W A++ G    G
Sbjct: 399 QFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFG 458

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN-IHCYLIRYGFLSVVEVS 452
            A++ ++LF +ML + V+P+  T   +L A +    + +  +  H     +  + + +  
Sbjct: 459 KAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHY 518

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
           T +ID+YS+ G L+ A +   ++P +  D   W+ +++   + G  E      + +++  
Sbjct: 519 TCMIDLYSRSGWLKQAEEFIKQMP-RCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLD 577

Query: 513 VQ-PNEVTFTSALHA 526
            Q P       ++HA
Sbjct: 578 PQNPASYVLLCSMHA 592


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  348 bits (892), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 191/548 (34%), Positives = 300/548 (54%), Gaps = 21/548 (3%)

Query: 137 VLITGFDMDTFVGNCLIAM--YMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           +++TG   D F  + LIA      + ++     +       +  SWN  I G+  +   +
Sbjct: 1   MVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPR 60

Query: 195 EALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
           EA+V++  +L+  G +PD  +   +  AC  L  I MG  I   V       +I   NA+
Sbjct: 61  EAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAV 120

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           + + V CG ++ AR +FD+   RD+V+W SMINGY   G    AL  ++ M+ EG++P+ 
Sbjct: 121 IHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDE 180

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC------------ 361
           +T+  ++S+C+ L  L  GR  H +  +  L+  V +  AL+DMY KC            
Sbjct: 181 VTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDS 240

Query: 362 ----NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
                +V  +  +F     K  VPWNA++ G VH    ++A+ LF +M    + P++ T+
Sbjct: 241 MTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTM 300

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            S L A + L  L   + IH Y+ ++     V + T LID+Y+KCG +  A ++F E+P 
Sbjct: 301 VSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELP- 359

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
             ++ + W+ II+G  +HG+   A++ F EM+ + V P+EVTF   L AC HGGL++EG 
Sbjct: 360 -GRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGR 418

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             F+ M        +  HY+C+VDLLGRAG L+EA +LI++MP++    VWGAL  AC I
Sbjct: 419 KYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRI 478

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           HGNV +GE AA  L +++P + G YVLL+ +Y     WK+A   R +M ++G+ K P  S
Sbjct: 479 HGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCS 538

Query: 658 LIEVRNIL 665
            IEV  I+
Sbjct: 539 SIEVNGIV 546



 Score =  251 bits (640), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 152/497 (30%), Positives = 260/497 (52%), Gaps = 29/497 (5%)

Query: 39  IITSGPLFTHLRSSLVRAYGHVSNVR-------ILFDEMSERSSFLYNTVMKMYAQNGAS 91
           ++ +G +     SS + A+  +S  R       ILF+  +  ++F +N  ++ +  +   
Sbjct: 1   MVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNP-NTFSWNVAIRGFLDSENP 59

Query: 92  HDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNC 151
            +++ ++  +L+     PDNYTYP++ KAC  L+  ++G  + G VL  GFD D FV N 
Sbjct: 60  REAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNA 119

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           +I + ++ G++  ARK+FD      +VSWN++I+GY +  +A EAL  +  M   G++PD
Sbjct: 120 VIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPD 179

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR---- 267
             +++ V+ +C  L+++++GR  H  +    L   +   NAL+DMY+KCG++  AR    
Sbjct: 180 EVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFD 239

Query: 268 ------------LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
                       ++FD M ++DVV W +MI GY      + AL LF  MQ   + P+ +T
Sbjct: 240 SMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVT 299

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
           + S LSACS L  L  G  +H +  K  L   V + TALIDMYAKC  +  + QVF    
Sbjct: 300 MVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELP 359

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
            + ++ W AI++G   +G A  A+  F +M+   V P++ T   LL A      +++   
Sbjct: 360 GRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRK 419

Query: 436 IHCYL-IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
               +  ++     ++  + ++D+  + G LE A ++   +PI + D VVW  +     +
Sbjct: 420 YFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPI-EADAVVWGALFFACRI 478

Query: 495 HGH---GETAVSLFKEM 508
           HG+   GE A S   +M
Sbjct: 479 HGNVLMGERAASKLLQM 495


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 197/545 (36%), Positives = 304/545 (55%), Gaps = 16/545 (2%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           ++KACT  +  +    +H R++  G   D F+ +  + +  +         VF+ +   S
Sbjct: 31  LLKACTTTSTLE---QVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPS 87

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
            V WNT I GY +N      + +F  M +S   PD  +  S++ AC  +  ++ G   H 
Sbjct: 88  TVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHG 147

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
                 +G ++    +L+D+Y KCG +  AR VFD M ER+VV+WT+MI GYA   D+  
Sbjct: 148 SAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVE 207

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A  LF  M       N+++  +++S       L+  R +      +N    V+  T +ID
Sbjct: 208 ARKLFDEMP----EKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRN----VVSFTTMID 259

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
            YAK   +  +  VF    ++  V W+A+++G V NG   +AV++F +M    V+P++  
Sbjct: 260 GYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFI 319

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSV--VEVSTGLIDIYSKCGSLESAHKIFSE 474
           + SL+ A + +  L+ A  +  Y +R   + V    V   LID+ +KCGS++ A K+F E
Sbjct: 320 MVSLMSACSQMGSLELAKWVDDY-VRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEE 378

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
           +P   +D++ +  ++ G  +HG G  AVSLF  M+  G+ P++V FT  L ACS  GL+D
Sbjct: 379 MP--KRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVD 436

Query: 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           EG   F  M  ++      DHY C+VDLLGRAGRL EAY+L+++MP++P    WGALLGA
Sbjct: 437 EGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGA 496

Query: 595 CVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP 654
           C +H ++ELGEV A  LFELEP+N GNYVLLS +Y+A  +W D   +R+ M E+G+RK P
Sbjct: 497 CKLHCDIELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIP 556

Query: 655 AHSLI 659
             S I
Sbjct: 557 GCSWI 561



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 144/495 (29%), Positives = 249/495 (50%), Gaps = 29/495 (5%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSS----LVRAYGHVSNVRILF 67
           TT  +  L++    T ++   +Q+HA II  G    H   S    L  +  + S    +F
Sbjct: 24  TTSSISTLLKACTTTSTL---EQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVF 80

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           + +S  S+ L+NT +K Y++N +   ++ +F+ M R  +  PD +TYP +IKAC+ +   
Sbjct: 81  NGVSSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKR-SDAVPDKFTYPSLIKACSKVCGV 139

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           K G+A HG  +  G   D FV   LI +Y   GE+  ARKVFD M E +VVSW  +I+GY
Sbjct: 140 KEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGY 199

Query: 188 FKNAYAKEALVVFDWML-KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
              +   EA  +FD M  K+ V  +  +++S    CG L+     +M  E+       +N
Sbjct: 200 ASFSDLVEARKLFDEMPEKNAVSWN--AIISGYVKCGDLRSAR--KMFDEMPH-----RN 250

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           + ++  ++D Y K G +  AR VF+   ERDVV W+++I+GY  NG    A+ +F  M  
Sbjct: 251 VVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCS 310

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC-EVIVETALIDMYAKCNLVK 365
             V+P+   + SL+SACS +  L+  + +  +  K +++     V  ALIDM AKC  + 
Sbjct: 311 RNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMD 370

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + ++F    K+  + + +++ G   +G   +AV LF +ML E + P+D     +L A +
Sbjct: 371 RATKLFEEMPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACS 430

Query: 426 ILADLQQAMNIHCYLIR-----YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
               + +     CY        Y  +   +    ++D+  + G L+ A+++   +P+ + 
Sbjct: 431 RAGLVDEG----CYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPV-EP 485

Query: 481 DIVVWSVIIAGYGMH 495
               W  ++    +H
Sbjct: 486 HAGAWGALLGACKLH 500


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 181/541 (33%), Positives = 305/541 (56%), Gaps = 35/541 (6%)

Query: 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVS 217
           +F  +  A  +F+ + E +++ WNT+  G+  N+ +  AL ++  M+  G+ P+  S   
Sbjct: 11  HFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPF 70

Query: 218 VLPACGYLKEIEMGRMIHELV--------------------AGGRLG-----------KN 246
           +L +C   K +  G+ IH  V                      GRL            ++
Sbjct: 71  LLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRH 130

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           + ++ AL+  Y   G +N AR +FD +S +DVV+W +MI+GY    + + AL L++ M  
Sbjct: 131 VVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMK 190

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
             V+P+  T+ +++SAC+    ++ GR LH+W         + +   LID+Y+KC  V+ 
Sbjct: 191 TNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVET 250

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           +  +F   +KK  + WN ++ G  H  L ++A+ LF++ML     PND T+ S+LPA A 
Sbjct: 251 ACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAH 310

Query: 427 LADLQQAMNIHCYLIRY--GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           L  +     IH Y+ +   G  +   + T LID+Y+KCG +E+A ++F  +  +   +  
Sbjct: 311 LGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRS--LSS 368

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+ +I G+ MHG    A  LF +M ++G+ P+++TF   L ACSH G+LD G  +F  M 
Sbjct: 369 WNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMS 428

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
           ++++   + +HY C++DLLG  G   EA ++IRTMP++P   +W +LL AC +H NVELG
Sbjct: 429 QDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELG 488

Query: 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
           E  A+ L ++EPENPG+YVLLS +Y+   RW     +R ++++KG++KAP  S IE+ ++
Sbjct: 489 ESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSV 548

Query: 665 L 665
           +
Sbjct: 549 V 549



 Score =  235 bits (599), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 146/484 (30%), Positives = 249/484 (51%), Gaps = 38/484 (7%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F+ + E +  ++NT+ + +A N  S  +LK+++ M+ LG   P++Y++P ++K+C    
Sbjct: 21  IFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLL-PNSYSFPFLLKSCAKSK 79

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGE------------------------ 161
               G  +HG VL  G+D+D +V   LI+MY   G                         
Sbjct: 80  ALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALIT 139

Query: 162 -------VKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
                  +  ARK+FD +    VVSWN +ISGY +    KEAL ++  M+K+ V+PD ++
Sbjct: 140 GYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDEST 199

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           +V+V+ AC     IE+GR +H  +     G NI   N L+D+Y KCG V  A  +F  ++
Sbjct: 200 MVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLA 259

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
           ++DV++W ++I G+      + AL LFQ M   G  PN +T+ S+L AC+ L  +  GR 
Sbjct: 260 KKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRW 319

Query: 335 LHAWTIK--QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           +H +  K  + +     + T+LIDMYAKC  ++ + QVF     +    WNA++ G   +
Sbjct: 320 IHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMH 379

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEV 451
           G A  A +LF +M    ++P+D T   LL A +    L    +I   + + Y     +E 
Sbjct: 380 GKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEH 439

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
              +ID+   CG  + A ++   +P+ + D V+W  ++    MH + E   S  + +++ 
Sbjct: 440 YGCMIDLLGHCGLFKEAKEMIRTMPM-EPDGVIWCSLLKACKMHNNVELGESYAQNLIK- 497

Query: 512 GVQP 515
            ++P
Sbjct: 498 -IEP 500



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 129/416 (31%), Positives = 209/416 (50%), Gaps = 13/416 (3%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++L+  Y   G+++N R LFDE+S +    +N ++  Y +     ++L+++  M++    
Sbjct: 135 TALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTN-V 193

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PD  T   V+ AC      +LG  LH  +   GF  +  + N LI +Y   GEV+ A  
Sbjct: 194 KPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACG 253

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F  + +  V+SWNTLI G+      KEAL++F  ML+SG  P+  +++SVLPAC +L  
Sbjct: 254 LFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGA 313

Query: 228 IEMGRMIHELVAGGRLGKNIAA--WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           I++GR IH  +     G   A+    +L+DMY KCG +  A+ VFD M  R + +W +MI
Sbjct: 314 IDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMI 373

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
            G+A++G    A  LF  M+  G+ P+ +T   LLSACS    L  GR +   ++ Q+ +
Sbjct: 374 FGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFR-SMSQDYK 432

Query: 346 CEVIVE--TALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGC-VHNGLARKAVEL 401
               +E    +ID+   C L K + ++      +   V W ++L  C +HN +  +  E 
Sbjct: 433 ITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNV--ELGES 490

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
           + Q L+++   N  +   L   YA      Q   I   L   G       S+  ID
Sbjct: 491 YAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEID 546


>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 209/638 (32%), Positives = 334/638 (52%), Gaps = 11/638 (1%)

Query: 33  KQLHAFIITSG--PLFTHLRSSLVRAYGHVSNV--RILFDEMSERSSFLYNTVMKMYAQN 88
           +++H + + +G   +  ++ ++LV  Y     V    +F  M  R+   +N ++  +   
Sbjct: 181 QEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLSHRVFSLMLVRNIVSWNAIITGFLNV 240

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G    +LK++  ML  G    D  T  +VI+AC +    +LG+ LH   +      D F+
Sbjct: 241 GDCAKALKLYSSMLIEG-IKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFI 299

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+ MY + G ++++  +F+A+       WN++IS Y    +  EA+ +F  M    +
Sbjct: 300 LNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERI 359

Query: 209 EPDCASVVSVLPACGYLKEIEM-GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           + D  ++  +L  C  L +  + GR +H       +  +    NAL+ MYVK   +  A+
Sbjct: 360 KEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQ 419

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VF++M   DV++W +MI+ +A +     A  LF +M    ++ NS TI SLL+ C    
Sbjct: 420 YVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGS 479

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L  GRS+H + IK  LE    + T+L +MY  C   + +  +F R  ++  V WN++++
Sbjct: 480 DLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLIS 539

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
             + N  A KA+ LF  M+ E+ EPN  T+ ++L +   LA L     +H Y  R     
Sbjct: 540 SYIKNDNAGKALLLFNHMISEL-EPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSL 598

Query: 448 VVEVS--TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
            ++ S     I +Y++CG L+ A KIF    ++ + IV W+ +I GYGMHG G  A   F
Sbjct: 599 EMDASLANAFITMYARCGKLQYAEKIFC--TLQTRSIVSWNAMITGYGMHGRGRDATLAF 656

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
            +M+  G +PN V+F S L ACSH GL   GL LF+ M+ +     +  HY C+VDLLGR
Sbjct: 657 AQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGR 716

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
            G   EA   I +MP++P  ++W ALL +C I  N +L E     L ELEP NPGN++LL
Sbjct: 717 GGHFSEAIAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILL 776

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           S +Y+A   W +   +R  + E+GL K P  S I + N
Sbjct: 777 SNIYAAAGLWSEVVQIRKWLRERGLGKPPGTSWIVIGN 814



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 138/473 (29%), Positives = 237/473 (50%), Gaps = 10/473 (2%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N+++K + +    H  L  +  M  LG   PD+ T P+V+KAC  L     G+ +H   
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLG-ITPDSATMPLVLKACGRLNAIGNGVRIHS-- 84

Query: 138 LITGFDM--DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
            I G D+  D  VG  L+  Y   G V  A KVF  M E  +VSWN LISGY      KE
Sbjct: 85  CIRGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKE 144

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALV 254
           A+++F  M K+G+ P+  +VV++L ACG + E+ +G+ IH   +  G    +     ALV
Sbjct: 145 AVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALV 204

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
             Y++  +V   R VF  M  R++V+W ++I G+   GD   AL L+  M  EG++ +++
Sbjct: 205 GFYMRFDAVLSHR-VFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAV 263

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T+  ++ AC+    L+ G  LH   IK NL  ++ +  AL++MY+    ++ S+ +F   
Sbjct: 264 TMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAV 323

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ-QA 433
                  WN++++  +  G   +A+ LF +M +E ++ +  T+  +L     L D     
Sbjct: 324 PTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWG 383

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             +H + ++ G      +   L+ +Y K   + +A  +F +  ++  D++ W+ +I+ + 
Sbjct: 384 RGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEK--MRGLDVISWNTMISAFA 441

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
                  A  LF  M +S ++ N  T  S L  C  G  L  G  +  F ++N
Sbjct: 442 QSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKN 494


>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 209/638 (32%), Positives = 334/638 (52%), Gaps = 11/638 (1%)

Query: 33  KQLHAFIITSG--PLFTHLRSSLVRAYGHVSNV--RILFDEMSERSSFLYNTVMKMYAQN 88
           +++H + + +G   +  ++ ++LV  Y     V    +F  M  R+   +N ++  +   
Sbjct: 181 QEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLSHRVFSLMLVRNIVSWNAIITGFLNV 240

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G    +LK++  ML  G    D  T  +VI+AC +    +LG+ LH   +      D F+
Sbjct: 241 GDCAKALKLYSSMLIEG-IKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFI 299

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+ MY + G ++++  +F+A+       WN++IS Y    +  EA+ +F  M    +
Sbjct: 300 LNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERI 359

Query: 209 EPDCASVVSVLPACGYLKEIEM-GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           + D  ++  +L  C  L +  + GR +H       +  +    NAL+ MYVK   +  A+
Sbjct: 360 KEDVRTIAIMLSLCNDLNDGSIWGRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQ 419

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VF++M   DV++W +MI+ +A +     A  LF +M    ++ NS TI SLL+ C    
Sbjct: 420 YVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGS 479

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L  GRS+H + IK  LE    + T+L +MY  C   + +  +F R  ++  V WN++++
Sbjct: 480 DLVFGRSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLIS 539

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
             + N  A KA+ LF  M+ E+ EPN  T+ ++L +   LA L     +H Y  R     
Sbjct: 540 SYIKNDNAGKALLLFNHMISEL-EPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSL 598

Query: 448 VVEVS--TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
            ++ S     I +Y++CG L+ A KIF    ++ + IV W+ +I GYGMHG G  A   F
Sbjct: 599 EMDASLANAFITMYARCGKLQYAEKIFC--TLQTRSIVSWNAMITGYGMHGRGRDATLAF 656

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
            +M+  G +PN V+F S L ACSH GL   GL LF+ M+ +     +  HY C+VDLLGR
Sbjct: 657 AQMLDDGFKPNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGR 716

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
            G   EA   I +MP++P  ++W ALL +C I  N +L E     L ELEP NPGN++LL
Sbjct: 717 GGHFSEAIAFINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILL 776

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           S +Y+A   W +   +R  + E+GL K P  S I + N
Sbjct: 777 SNIYAAAGLWSEVVQIRKWLRERGLGKPPGTSWIVIGN 814



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 138/473 (29%), Positives = 237/473 (50%), Gaps = 10/473 (2%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N+++K + +    H  L  +  M  LG   PD+ T P+V+KAC  L     G+ +H   
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLG-ITPDSATMPLVLKACGRLNAIGNGVRIHS-- 84

Query: 138 LITGFDM--DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
            I G D+  D  VG  L+  Y   G V  A KVF  M E  +VSWN LISGY      KE
Sbjct: 85  FIRGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKE 144

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALV 254
           A+++F  M K+G+ P+  +VV++L ACG + E+ +G+ IH   +  G    +     ALV
Sbjct: 145 AVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALV 204

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
             Y++  +V   R VF  M  R++V+W ++I G+   GD   AL L+  M  EG++ +++
Sbjct: 205 GFYMRFDAVLSHR-VFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAV 263

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T+  ++ AC+    L+ G  LH   IK NL  ++ +  AL++MY+    ++ S+ +F   
Sbjct: 264 TMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAV 323

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ-QA 433
                  WN++++  +  G   +A+ LF +M +E ++ +  T+  +L     L D     
Sbjct: 324 PTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWG 383

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             +H + ++ G      +   L+ +Y K   + +A  +F +  ++  D++ W+ +I+ + 
Sbjct: 384 RGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEK--MRGLDVISWNTMISAFA 441

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
                  A  LF  M +S ++ N  T  S L  C  G  L  G  +  F ++N
Sbjct: 442 QSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKN 494


>gi|218197313|gb|EEC79740.1| hypothetical protein OsI_21088 [Oryza sativa Indica Group]
          Length = 1068

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 225/640 (35%), Positives = 339/640 (52%), Gaps = 12/640 (1%)

Query: 32  TKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
            K++H F +  G  +     +SL++ Y   G + +   +F  M  + +  +  ++  Y +
Sbjct: 317 AKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEK 376

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NG    +L+++  ++ L   NPD+ T    + AC  L    +GI LH      GF     
Sbjct: 377 NGFPDKALEVY-ALMELHNVNPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVV 435

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           V N L+ MY     +  A +VF  M E  VVSW+++I+G+  N  + +AL  F +ML   
Sbjct: 436 VANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDALYYFRYMLGH- 494

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           V+P+  + ++ L AC     +  G+ IH  V    +G      NAL+D+YVKCG  + A 
Sbjct: 495 VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAW 554

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
             F   SE+DVV+W  M++G+  +G    AL LF  M +  +    +   S L+AC+ L 
Sbjct: 555 AQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMMYTSL--GRMGACSALAACACLG 612

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L  G  LH     +     V+V  AL++MYAK   +  + +VF   ++K  V W++++A
Sbjct: 613 RLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIA 672

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G   N  +  A+  FR ML  V +PN  T  + L A A    L+    IH Y++R G  S
Sbjct: 673 GFCFNHRSFDALYYFRYMLGHV-KPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGS 731

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
              V   L+D+Y KCG    A   FS     +KD+V W+++++G+  HG G+ A+SLF +
Sbjct: 732 EGYVPNALLDLYVKCGQTSYAWAQFS--VHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQ 789

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           MV+ G  P+EVTF   + ACS  G++ +G +LF+   E         HY C+VDLL R G
Sbjct: 790 MVEMGEHPDEVTFV-LMCACSRAGMVIQGWELFHRRTEKFSIVPNLKHYACMVDLLSRVG 848

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
           +L EAY+LI  MP+KP  AVWGALL  C IH +VELGE+AAK + ELEP +   +VLL  
Sbjct: 849 KLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCD 908

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           LY+   +W     VR  M EKGL +    S +EV+ +  A
Sbjct: 909 LYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHA 948



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 173/550 (31%), Positives = 276/550 (50%), Gaps = 12/550 (2%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +   R +FD M+      +N ++  + +N      L++FL ML   E  P+  T   V
Sbjct: 246 GDIVAARKVFDGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLE-NEVQPNLMTITSV 304

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
             A   L+       +HG  +  GF +D    N LI MY + G +  A K+F  M     
Sbjct: 305 TVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDA 364

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           +SW  +ISGY KN +  +AL V+  M    V PD  ++ S L AC  L  +++G  +HEL
Sbjct: 365 MSWTAMISGYEKNGFPDKALEVYALMELHNVNPDDVTIASALAACACLGRLDVGIKLHEL 424

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                  + +   NAL++MY K   +++A  VF  M+E+DVV+W+SMI G+  N    +A
Sbjct: 425 AQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDA 484

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L  F+ M    V+PNS+T  + LSAC++   L+ G+ +HA+ ++  +  E  V  AL+D+
Sbjct: 485 LYYFRYM-LGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDL 543

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y KC     ++  F+  S+K  V WN +L+G V +GL   A+ LF QM+   +       
Sbjct: 544 YVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMMYTSL--GRMGA 601

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            S L A A L  L   + +H      GF+  V V+  L+++Y+K   ++ A ++F    +
Sbjct: 602 CSALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKF--M 659

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
            +KD+V WS +IAG+  +     A+  F+ M+   V+PN VTF +AL AC+  G L  G 
Sbjct: 660 AEKDVVSWSSMIAGFCFNHRSFDALYYFRYMLGH-VKPNSVTFIAALSACAATGALRSGK 718

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
           ++  ++L      S       ++DL  + G+   A+        K     W  +L   V 
Sbjct: 719 EIHAYVLRC-GIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDV-VSWNIMLSGFVA 776

Query: 598 HGNVELGEVA 607
           HG   LG++A
Sbjct: 777 HG---LGDIA 783



 Score =  230 bits (587), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 160/520 (30%), Positives = 254/520 (48%), Gaps = 14/520 (2%)

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL---GIALHGRVLITGFDMDTF 147
           SH  L   L +L      PD   Y  + + C    WR+    G+    R           
Sbjct: 76  SHGQLAQALWLLESSPEPPDEGAYVALFRLCE---WRRAVDAGMRACARADAEHPSFGLR 132

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           +GN +++M + FGE+  A +VF  M E  V SWN ++ GY K  + +EAL ++  ML +G
Sbjct: 133 LGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYRMLWAG 192

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           + PD  +   VL  CG + +  MGR +H  V     G  +   NALV MY KCG +  AR
Sbjct: 193 MRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAAR 252

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VFD M+  D ++W +MI G+  N +    L LF  M    V+PN +TI S+  A   L 
Sbjct: 253 KVFDGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLS 312

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            +   + +H + +K+    +V    +LI MY     +  + ++F+R   K  + W A+++
Sbjct: 313 EVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMIS 372

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G   NG   KA+E++  M +  V P+D T+ S L A A L  L   + +H      GF+ 
Sbjct: 373 GYEKNGFPDKALEVYALMELHNVNPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIR 432

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            V V+  L+++Y+K   ++ A ++F    + +KD+V WS +IAG+  +     A+  F+ 
Sbjct: 433 YVVVANALLEMYAKSKHIDKAIEVFKF--MAEKDVVSWSSMIAGFCFNHRSFDALYYFRY 490

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M+   V+PN VTF +AL AC+  G L  G ++  ++L      S       ++DL  + G
Sbjct: 491 MLGH-VKPNSVTFIAALSACAATGALRSGKEIHAYVLRC-GIGSEGYVPNALLDLYVKCG 548

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVA 607
           +   A+        K     W  +L   V HG   LG++A
Sbjct: 549 QTSYAWAQFSVHSEKDV-VSWNIMLSGFVAHG---LGDIA 584



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 198/424 (46%), Gaps = 20/424 (4%)

Query: 7   HTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSN 62
           H  P +   +  L    AAT ++   K++HA+++  G     ++ ++L+  Y   G  S 
Sbjct: 494 HVKPNSVTFIAAL-SACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSY 552

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGML--RLGEYNPDNYTYPIVIKA 120
               F   SE+    +N ++  +  +G    +L +F  M+   LG     +         
Sbjct: 553 AWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMMYTSLGRMGACSALAACACLG 612

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
             D     +GI LH      GF     V N L+ MY     +  A +VF  M E  VVSW
Sbjct: 613 RLD-----VGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSW 667

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240
           +++I+G+  N  + +AL  F +ML   V+P+  + ++ L AC     +  G+ IH  V  
Sbjct: 668 SSMIAGFCFNHRSFDALYYFRYMLGH-VKPNSVTFIAALSACAATGALRSGKEIHAYVLR 726

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
             +G      NAL+D+YVKCG  + A   F   SE+DVV+W  M++G+  +G    AL L
Sbjct: 727 CGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSL 786

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL-HAWTIKQNLECEVIVETALIDMYA 359
           F  M   G  P+ +T   L+ ACS    + +G  L H  T K ++   +     ++D+ +
Sbjct: 787 FNQMVEMGEHPDEVTF-VLMCACSRAGMVIQGWELFHRRTEKFSIVPNLKHYACMVDLLS 845

Query: 360 KCNLVKLSFQVFARTS-KKKTVPWNAILAGC-VHNGLARKAVELFRQMLVEVVEPNDATL 417
           +   +  ++ +  R   K     W A+L GC +H  +  +  EL  ++++E +EPND   
Sbjct: 846 RVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHV--ELGELAAKVILE-LEPNDVAY 902

Query: 418 NSLL 421
           + LL
Sbjct: 903 HVLL 906


>gi|356540705|ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g50420-like [Glycine max]
          Length = 715

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 220/658 (33%), Positives = 356/658 (54%), Gaps = 16/658 (2%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSGPLFTH----LRSSLVRAY---GHVSNVRILFDE 69
           + L+Q+ +   S+   +QLHA I+T+   FT     + ++++  Y   G +++  ++FD+
Sbjct: 14  LSLLQKCSTVTSLREARQLHALILTTTTAFTSQSPFVYNNILSMYARCGSLTDSHLVFDK 73

Query: 70  MSERSSFLYNTVMKMYAQNGASH--DSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           M  R+   YN ++  Y++   +H   +L+++  M+  G   P + T+  +++A + L   
Sbjct: 74  MPRRTIVSYNALLAAYSRASPNHAISALELYTQMVTNG-LRPSSTTFTSLLQASSLLEHW 132

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
             G +LH +    G + D  +   L+ MY N G++ +A  VF  M +   V+WN+LI GY
Sbjct: 133 WFGSSLHAKGFKLGLN-DICLQTSLLNMYSNCGDLSSAELVFWDMVDRDHVAWNSLIMGY 191

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            KN   +E + +F  M+  G  P   +   VL +C  LK+   GR+IH  V    +  ++
Sbjct: 192 LKNNKIEEGIWLFIKMMSVGFAPTQFTYCMVLNSCSRLKDYRSGRLIHAHVIVRNVSLDL 251

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQF 306
              NALVDMY   G++  A  +F RM   D+V+W SMI GY+ N D   A+ LF QL + 
Sbjct: 252 HLQNALVDMYCNAGNMQTAYRIFSRMENPDLVSWNSMIAGYSENEDGEKAMNLFVQLQEM 311

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
              +P+  T   ++SA         G+SLHA  IK   E  V V + L+ MY K +    
Sbjct: 312 CFPKPDDYTYAGIISATGVFPSSSYGKSLHAEVIKTGFERSVFVGSTLVSMYFKNHESDA 371

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           +++VF   S K  V W  ++ G         A+  F QM+ E  E +D  L+ ++ A A 
Sbjct: 372 AWRVFCSISVKDVVLWTEMITGYSKMTDGICAIRCFFQMVHEGHEVDDYVLSGVVNACAN 431

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           LA L+Q   IHCY ++ G+   + VS  LID+Y+K GSLE+A+ +FS+  + + D+  W+
Sbjct: 432 LAVLRQGEIIHCYAVKLGYDVEMSVSGSLIDMYAKNGSLEAAYLVFSQ--VSEPDLKCWN 489

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            ++ GY  HG  E A+ +F+E+++ G+ P++VTF S L ACSH  L+++G  L+N+M  +
Sbjct: 490 SMLGGYSHHGMVEEALQVFEEILKQGLIPDQVTFLSLLSACSHSRLVEQGKFLWNYM-NS 548

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP-LKPTHAVWGALLGACVIHGNVELGE 605
                   HY+C+V L  RA  L+EA ++I   P ++    +W  LL ACVI+ N ++G 
Sbjct: 549 IGLIPGLKHYSCMVTLFSRAALLEEAEEIINKSPYIEDNLELWRTLLSACVINKNFKVGI 608

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            AA+ +  L+ E+    VLLS LY+A R+W     +R  M    L K P  S IE +N
Sbjct: 609 HAAEEVLRLKAEDGPTLVLLSNLYAAARKWDKVAEIRRNMRGLMLDKYPGLSWIEAKN 666


>gi|356518523|ref|XP_003527928.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Glycine max]
          Length = 686

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 205/672 (30%), Positives = 335/672 (49%), Gaps = 41/672 (6%)

Query: 27  KSIAGTKQLHAFIITSGPLFTH--LRSSLVRAYGHVS---NVRILFDEMSERSSFLYNTV 81
           ++I   K LH+ II  G L  H  L +S++  Y   S   + R LFDEM  R+   + T+
Sbjct: 17  QAIKHAKSLHSLIIKLG-LSNHIFLLNSIISVYAKCSRFDDARTLFDEMPHRNIVSFTTM 75

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           +  +  +G  H++L ++  ML      P+ + Y  V+KAC  +   +LG+ +H  V    
Sbjct: 76  VSAFTNSGRPHEALTLYNHMLESKTVQPNQFLYSAVLKACGLVGDVELGMLVHQHVSEAR 135

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
            + DT + N L+ MY+  G +  A++VF  +   +  SWNTLI G+ K    ++A  +FD
Sbjct: 136 LEFDTVLMNALLDMYVKCGSLMDAKRVFHEIPCKNSTSWNTLILGHAKQGLMRDAFNLFD 195

Query: 202 WMLK------------------------------SGVEPDCASVVSVLPACGYLKEIEMG 231
            M +                               G++ D  +    L ACG L E+ MG
Sbjct: 196 QMPEPDLVSWNSIIAGLADNASPHALQFLSMMHGKGLKLDAFTFPCALKACGLLGELTMG 255

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE--RDVVTWTSMINGYA 289
           R IH  +    L  +    ++L+DMY  C  ++EA  +FD+ S     +  W SM++GY 
Sbjct: 256 RQIHCCIIKSGLECSCYCISSLIDMYSNCKLLDEAMKIFDKNSPLAESLAVWNSMLSGYV 315

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            NGD   ALG+   M   G + +S T    L  C     L+    +H   I +  E + +
Sbjct: 316 ANGDWWRALGMIACMHHSGAQFDSYTFSIALKVCIYFDNLRLASQVHGLIITRGYELDHV 375

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           V + LID+YAK   +  + ++F R   K  V W++++ GC   GL      LF  M+   
Sbjct: 376 VGSILIDLYAKQGNINSALRLFERLPNKDVVAWSSLIVGCARLGLGTLVFSLFMDMVHLD 435

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           +E +   L+ +L   + LA LQ    IH + ++ G+ S   ++T L D+Y+KCG +E A 
Sbjct: 436 LEIDHFVLSIVLKVSSSLASLQSGKQIHSFCLKKGYESERVITTALTDMYAKCGEIEDAL 495

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
            +F    + + D + W+ II G   +G  + A+S+  +M++SG +PN++T    L AC H
Sbjct: 496 ALFD--CLYEIDTMSWTGIIVGCAQNGRADKAISILHKMIESGTKPNKITILGVLTACRH 553

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
            GL++E   +F  +   H      +HY C+VD+  +AGR  EA +LI  MP KP   +W 
Sbjct: 554 AGLVEEAWTIFKSIETEHGLTPCPEHYNCMVDIFAKAGRFKEARNLINDMPFKPDKTIWC 613

Query: 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
           +LL AC  + N  L  + A+ L    PE+   Y++LS +Y+++  W +   VR+ + + G
Sbjct: 614 SLLDACGTYKNRHLANIVAEHLLATSPEDASVYIMLSNVYASLGMWDNLSKVREAVRKVG 673

Query: 650 LRKAPAHSLIEV 661
           ++ A   S IE+
Sbjct: 674 IKGA-GKSWIEI 684



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 158/580 (27%), Positives = 270/580 (46%), Gaps = 47/580 (8%)

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           + ++ C      K   +LH  ++  G     F+ N +I++Y        AR +FD M   
Sbjct: 8   LALRCCGRFQAIKHAKSLHSLIIKLGLSNHIFLLNSIISVYAKCSRFDDARTLFDEMPHR 67

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMI 234
           ++VS+ T++S +  +    EAL +++ ML+S  V+P+     +VL ACG + ++E+G ++
Sbjct: 68  NIVSFTTMVSAFTNSGRPHEALTLYNHMLESKTVQPNQFLYSAVLKACGLVGDVELGMLV 127

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV------------------------- 269
           H+ V+  RL  +    NAL+DMYVKCGS+ +A+ V                         
Sbjct: 128 HQHVSEARLEFDTVLMNALLDMYVKCGSLMDAKRVFHEIPCKNSTSWNTLILGHAKQGLM 187

Query: 270 ------FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
                 FD+M E D+V+W S+I G A N    +AL    +M  +G++ ++ T    L AC
Sbjct: 188 RDAFNLFDQMPEPDLVSWNSIIAGLADNAS-PHALQFLSMMHGKGLKLDAFTFPCALKAC 246

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK--KKTVP 381
             L  L  GR +H   IK  LEC     ++LIDMY+ C L+  + ++F + S   +    
Sbjct: 247 GLLGELTMGRQIHCCIIKSGLECSCYCISSLIDMYSNCKLLDEAMKIFDKNSPLAESLAV 306

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           WN++L+G V NG   +A+ +   M     + +  T +  L       +L+ A  +H  +I
Sbjct: 307 WNSMLSGYVANGDWWRALGMIACMHHSGAQFDSYTFSIALKVCIYFDNLRLASQVHGLII 366

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
             G+     V + LID+Y+K G++ SA ++F  +P  +KD+V WS +I G    G G   
Sbjct: 367 TRGYELDHVVGSILIDLYAKQGNINSALRLFERLP--NKDVVAWSSLIVGCARLGLGTLV 424

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561
            SLF +MV   ++ +    +  L   S    L  G  + +F L+      R    T + D
Sbjct: 425 FSLFMDMVHLDLEIDHFVLSIVLKVSSSLASLQSGKQIHSFCLKKGYESERVI-TTALTD 483

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL-EPENPG 620
           +  + G +++A  L   +    T + W  ++  C  +G     + A   L ++ E     
Sbjct: 484 MYAKCGEIEDALALFDCLYEIDTMS-WTGIIVGCAQNGR---ADKAISILHKMIESGTKP 539

Query: 621 NYVLLSKLYSAVRRWKDAENV----RDVMDEKGLRKAPAH 656
           N + +  + +A R     E      + +  E GL   P H
Sbjct: 540 NKITILGVLTACRHAGLVEEAWTIFKSIETEHGLTPCPEH 579


>gi|297833250|ref|XP_002884507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330347|gb|EFH60766.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 676

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 190/516 (36%), Positives = 291/516 (56%), Gaps = 3/516 (0%)

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           V N L+++Y+  G++  A K+FD M    V+S N +  G+ +N   +   V+   ML SG
Sbjct: 92  VWNSLLSLYVKCGKLGDALKLFDEMPVRDVISQNIVFYGFLRNRETESGFVLLKRMLGSG 151

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
              D A++  VL  C   +   + +MIH L       K I+  N L+  Y KCG     R
Sbjct: 152 -GFDQATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGR 210

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VF  M+ R+V+TWT++I+G   N    + L LF LM+   V PNS+T  S L+ACS   
Sbjct: 211 WVFSEMAHRNVITWTAVISGLIENELHEDGLRLFCLMRRGLVHPNSVTYLSALAACSGSQ 270

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            +  G+ +HA   K  +E E+ +E+AL+DMY+KC  ++ ++++F  + +   V    IL 
Sbjct: 271 MIVEGQQIHALLWKFGIESELCIESALMDMYSKCGSIEDAWKIFESSQEVDEVSMTVILV 330

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G   NG   +A++ F +ML   VE +   ++++L    +   L     +H  +I+  F  
Sbjct: 331 GLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAILGVSFVDNSLGLGKQLHSLVIKRKFCG 390

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
              V+ GLI++YSKCG L  +  +F  +P   ++ V W+ +IA +  HGHG  A+ L++E
Sbjct: 391 NTFVNNGLINMYSKCGDLTDSQTVFRRMP--KRNYVSWNSMIAAFARHGHGLAALKLYEE 448

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M    V+P +VTF S LHACSH GL+D+G +L N M E H    R +HYTCI+D+LGRAG
Sbjct: 449 MTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIKPRTEHYTCIIDMLGRAG 508

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
            + EA   I ++PLKP   +W ALLGAC  HG+ E+GE AA+ LFE  P++   ++L++ 
Sbjct: 509 LMKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFETAPDSSAAHILMAN 568

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +YS+  +WK+       M E G+ K    S IE+  
Sbjct: 569 IYSSRGKWKERAKTIKRMKEMGVTKETGISWIEMEK 604



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 127/451 (28%), Positives = 209/451 (46%), Gaps = 4/451 (0%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           SL    G + +   LFDEM  R     N V   + +N  +     +   ML  G +  D 
Sbjct: 98  SLYVKCGKLGDALKLFDEMPVRDVISQNIVFYGFLRNRETESGFVLLKRMLGSGGF--DQ 155

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T  IV+  C    +  +   +H   +++G+D +  VGN LI  Y   G   + R VF  
Sbjct: 156 ATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRWVFSE 215

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M   +V++W  +ISG  +N   ++ L +F  M +  V P+  + +S L AC   + I  G
Sbjct: 216 MAHRNVITWTAVISGLIENELHEDGLRLFCLMRRGLVHPNSVTYLSALAACSGSQMIVEG 275

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           + IH L+    +   +   +AL+DMY KCGS+ +A  +F+   E D V+ T ++ G A N
Sbjct: 276 QQIHALLWKFGIESELCIESALMDMYSKCGSIEDAWKIFESSQEVDEVSMTVILVGLAQN 335

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G    A+  F  M   GV  ++  + ++L        L  G+ LH+  IK+       V 
Sbjct: 336 GSEEEAIQFFIRMLQAGVEIDANVVSAILGVSFVDNSLGLGKQLHSLVIKRKFCGNTFVN 395

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
             LI+MY+KC  +  S  VF R  K+  V WN+++A    +G    A++L+ +M    V+
Sbjct: 396 NGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVK 455

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           P D T  SLL A + +  + +   +   +   +G     E  T +ID+  + G ++ A  
Sbjct: 456 PTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIKPRTEHYTCIIDMLGRAGLMKEAKS 515

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
               +P+K  D  +W  ++     HG  E  
Sbjct: 516 FIDSLPLK-PDCKIWQALLGACSFHGDTEVG 545



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 172/355 (48%), Gaps = 7/355 (1%)

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           +  WN+L+ +YVKCG + +A  +FD M  RDV++   +  G+  N +  +   L + M  
Sbjct: 90  LVVWNSLLSLYVKCGKLGDALKLFDEMPVRDVISQNIVFYGFLRNRETESGFVLLKRMLG 149

Query: 307 E-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
             G    +LTI  +LS C +  +    + +HA  I    + E+ V   LI  Y KC    
Sbjct: 150 SGGFDQATLTI--VLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSV 207

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
               VF+  + +  + W A+++G + N L    + LF  M   +V PN  T  S L A +
Sbjct: 208 SGRWVFSEMAHRNVITWTAVISGLIENELHEDGLRLFCLMRRGLVHPNSVTYLSALAACS 267

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
               + +   IH  L ++G  S + + + L+D+YSKCGS+E A KIF     ++ D V  
Sbjct: 268 GSQMIVEGQQIHALLWKFGIESELCIESALMDMYSKCGSIEDAWKIFES--SQEVDEVSM 325

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           +VI+ G   +G  E A+  F  M+Q+GV+ +    ++ L        L  G  L + +++
Sbjct: 326 TVILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAILGVSFVDNSLGLGKQLHSLVIK 385

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             + C        ++++  + G L ++  + R MP K  +  W +++ A   HG+
Sbjct: 386 R-KFCGNTFVNNGLINMYSKCGDLTDSQTVFRRMP-KRNYVSWNSMIAAFARHGH 438


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 214/674 (31%), Positives = 351/674 (52%), Gaps = 31/674 (4%)

Query: 4    PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAYG---H 59
            P H T P     VIK     A    +     +H  ++ +G +    + ++LV  YG    
Sbjct: 540  PDHFTYP----CVIKAC---AGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGF 592

Query: 60   VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL---GEYNPDNYTYPI 116
            V++   LFD M ER+   +N+++++++ NG S +S  +   M+     G + PD  T   
Sbjct: 593  VTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVT 652

Query: 117  VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
            V+  C       LG  +HG  +    D +  + N L+ MY   G +  A+ +F      +
Sbjct: 653  VLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKN 712

Query: 177  VVSWNTLISGYFKNAYAKEALVVFDWMLKSG--VEPDCASVVSVLPACGY------LKEI 228
            VVSWNT++ G+           V   ML  G  V+ D  ++++ +P C +      LKE+
Sbjct: 713  VVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKEL 772

Query: 229  EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
                +  E V       N    NA V  Y KCGS++ A+ VF  +  + V +W ++I G+
Sbjct: 773  HCYSLKQEFVY------NELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGH 826

Query: 289  ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
            A + D R +L     M+  G+ P+S T+ SLLSACS L  L+ G+ +H + I+  LE ++
Sbjct: 827  AQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDL 886

Query: 349  IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
             V  +++ +Y  C  +     +F     K  V WN ++ G + NG   +A+ +FRQM++ 
Sbjct: 887  FVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLY 946

Query: 409  VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
             ++    ++  +  A ++L  L+     H Y +++       ++  LID+Y+K GS+  +
Sbjct: 947  GIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQS 1006

Query: 469  HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
             K+F+   +K+K    W+ +I GYG+HG  + A+ LF+EM ++G  P+++TF   L AC+
Sbjct: 1007 SKVFN--GLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACN 1064

Query: 529  HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI-RTMPLKPTHAV 587
            H GL+ EGL   + M  +        HY C++D+LGRAG+LD+A  ++   M  +    +
Sbjct: 1065 HSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGI 1124

Query: 588  WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
            W +LL +C IH N+E+GE  A  LFELEPE P NYVLLS LY+ + +W+D   VR  M+E
Sbjct: 1125 WKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNE 1184

Query: 648  KGLRKAPAHSLIEV 661
              LRK    S IE+
Sbjct: 1185 MSLRKDAGCSWIEL 1198



 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 177/623 (28%), Positives = 316/623 (50%), Gaps = 20/623 (3%)

Query: 19   LVQQYAATKSIAGTKQLHAFIITSGPLFTH--LRSSLVRAY---GHVSNVRILFDEMSER 73
            L+Q     K I   +++H  +  S  L     L + ++  Y   G   + R +FD +  +
Sbjct: 445  LLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSK 504

Query: 74   SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
            + F +N V+  Y++N    + L+ F+ M+   +  PD++TYP VIKAC  ++   +G+A+
Sbjct: 505  NLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAV 564

Query: 134  HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
            HG V+ TG   D FVGN L++ Y   G V  A ++FD M E ++VSWN++I  +  N ++
Sbjct: 565  HGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFS 624

Query: 194  KEALVVFDWMLKSGVE----PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
            +E+ ++   M++   +    PD A++V+VLP C   +EI +G+ +H      RL K +  
Sbjct: 625  EESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVL 684

Query: 250  WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM--QFE 307
             NAL+DMY KCG +  A+++F   + ++VV+W +M+ G++  GD      + + M    E
Sbjct: 685  NNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGE 744

Query: 308  GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
             V+ + +TI + +  C    +L   + LH +++KQ      +V  A +  YAKC  +  +
Sbjct: 745  DVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYA 804

Query: 368  FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
             +VF     K    WNA++ G   +   R +++   QM +  + P+  T+ SLL A + L
Sbjct: 805  QRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKL 864

Query: 428  ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
              L+    +H ++IR      + V   ++ +Y  CG L +   +F    ++DK +V W+ 
Sbjct: 865  KSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFD--AMEDKSLVSWNT 922

Query: 488  IIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH 547
            +I GY  +G  + A+ +F++MV  G+Q   ++      ACS    L  G +   + L+ H
Sbjct: 923  VITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALK-H 981

Query: 548  QTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVA 607
                 A     ++D+  + G + ++  +   +  K T A W A++    IHG   L + A
Sbjct: 982  LLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKST-ASWNAMIMGYGIHG---LAKEA 1037

Query: 608  AKWLFELEP--ENPGNYVLLSKL 628
             K   E++    NP +   L  L
Sbjct: 1038 IKLFEEMQRTGHNPDDLTFLGVL 1060


>gi|255538308|ref|XP_002510219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223550920|gb|EEF52406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1113

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 207/620 (33%), Positives = 333/620 (53%), Gaps = 13/620 (2%)

Query: 34   QLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
            Q+   +I  G   F ++ ++L+  Y   G VS     FD M  R    +N ++  Y++NG
Sbjct: 463  QIQNHLIKRGIDQFVYVSTALLDLYMKLGRVSYAHNAFDYMPIRDVVSWNALICGYSRNG 522

Query: 90   ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
                +L++F+ ML+LG + P   T   ++ +C  L     G ++HG  + +G  +D  V 
Sbjct: 523  YDFSALELFVQMLKLG-FCPRQTTLVGLLPSCGQLELVFQGKSIHGFGIKSGLHLDPQVK 581

Query: 150  NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
            N L +MY   G+++AA  +F+ M + SVVSWNT+I  Y +N +  EA+ VF  M+ +GVE
Sbjct: 582  NALTSMYAKCGDLEAAEYLFEEMMDKSVVSWNTMIGAYGQNGFFDEAMFVFKRMIGAGVE 641

Query: 210  PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
                +++S LP+     E      IH       L  + +   +L+ MY + GS + A L+
Sbjct: 642  VSQVTIMS-LPSANANPE-----SIHCYTIKVGLADDASVVTSLICMYARYGSTDHAELL 695

Query: 270  FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
            +  + ++++V+ T++I  YA  G++   +  F  M    ++P+S+ + S+L   +   ++
Sbjct: 696  YWSLPQKNLVSLTAIITSYAEAGNLGLVMESFSQMHQLNMKPDSVAMLSILHGIADPVHI 755

Query: 330  KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
              G   H + IK  L+   +V   LI MY+K N V+  F +F+   +K  + WN++++GC
Sbjct: 756  CIGHVFHGYAIKSGLDTFNLVTNGLISMYSKFNNVEALFGLFSGMHEKPLISWNSVISGC 815

Query: 390  VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
            V  G A  A+ELF QM +    P+  T+ SLL   + L  LQ    +H Y++R       
Sbjct: 816  VQAGRASHAIELFCQMKMHGCNPDAITIASLLSGCSQLGYLQFGERLHSYILRNKLEMED 875

Query: 450  EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
             V T LI +Y+KCGS+  A ++F  I      +  W+ +I+GY  +G    A++ + EM 
Sbjct: 876  FVGTALIHMYTKCGSIVHAERVFKSI--GKPCLATWNAMISGYSCYGFEHKALTCYSEMQ 933

Query: 510  QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
            + GV+P+++TF   L AC+HGGL+ EG   F  M + +       H  C+V LL R G  
Sbjct: 934  EQGVEPDKITFLGVLAACTHGGLIHEGRRYFQIMTKVYDMVPTLQHCACMVGLLARVGLF 993

Query: 570  DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629
            +EA   I+ M  +P  AVWGA L AC IH  V+LGE  AK L+ L+  N G YVL+S LY
Sbjct: 994  EEALLFIKNMEKEPDSAVWGAFLSACCIHQEVKLGEYLAKKLYLLDCRNGGLYVLMSNLY 1053

Query: 630  SAVRRWKDAENVRDVMDEKG 649
            +   RW D   VR++M + G
Sbjct: 1054 AVTGRWDDVARVREMMKDAG 1073



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 144/470 (30%), Positives = 225/470 (47%), Gaps = 12/470 (2%)

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           I +   ++  G D   +V   L+ +YM  G V  A   FD M    VVSWN LI GY +N
Sbjct: 462 IQIQNHLIKRGIDQFVYVSTALLDLYMKLGRVSYAHNAFDYMPIRDVVSWNALICGYSRN 521

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
            Y   AL +F  MLK G  P   ++V +LP+CG L+ +  G+ IH       L  +    
Sbjct: 522 GYDFSALELFVQMLKLGFCPRQTTLVGLLPSCGQLELVFQGKSIHGFGIKSGLHLDPQVK 581

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           NAL  MY KCG +  A  +F+ M ++ VV+W +MI  Y  NG    A+ +F+ M   GV 
Sbjct: 582 NALTSMYAKCGDLEAAEYLFEEMMDKSVVSWNTMIGAYGQNGFFDEAMFVFKRMIGAGVE 641

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
            + +TI SL SA ++        S+H +TIK  L  +  V T+LI MYA+      +  +
Sbjct: 642 VSQVTIMSLPSANAN------PESIHCYTIKVGLADDASVVTSLICMYARYGSTDHAELL 695

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           +    +K  V   AI+      G     +E F QM    ++P+   + S+L   A    +
Sbjct: 696 YWSLPQKNLVSLTAIITSYAEAGNLGLVMESFSQMHQLNMKPDSVAMLSILHGIADPVHI 755

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
                 H Y I+ G  +   V+ GLI +YSK  ++E+   +FS   + +K ++ W+ +I+
Sbjct: 756 CIGHVFHGYAIKSGLDTFNLVTNGLISMYSKFNNVEALFGLFSG--MHEKPLISWNSVIS 813

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           G    G    A+ LF +M   G  P+ +T  S L  CS  G L  G  L +++L N    
Sbjct: 814 GCVQAGRASHAIELFCQMKMHGCNPDAITIASLLSGCSQLGYLQFGERLHSYILRN--KL 871

Query: 551 SRADHY-TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
              D   T ++ +  + G +  A  + +++  KP  A W A++     +G
Sbjct: 872 EMEDFVGTALIHMYTKCGSIVHAERVFKSIG-KPCLATWNAMISGYSCYG 920



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 126/494 (25%), Positives = 224/494 (45%), Gaps = 20/494 (4%)

Query: 10   PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRI 65
            P+ T LV  L+      + +   K +H F I SG    P   +  +S+    G +     
Sbjct: 541  PRQTTLV-GLLPSCGQLELVFQGKSIHGFGIKSGLHLDPQVKNALTSMYAKCGDLEAAEY 599

Query: 66   LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
            LF+EM ++S   +NT++  Y QNG   +++ +F  M+  G          + +   T ++
Sbjct: 600  LFEEMMDKSVVSWNTMIGAYGQNGFFDEAMFVFKRMIGAG----------VEVSQVTIMS 649

Query: 126  WRKLGI---ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT 182
                     ++H   +  G   D  V   LI MY  +G    A  ++ ++ + ++VS   
Sbjct: 650  LPSANANPESIHCYTIKVGLADDASVVTSLICMYARYGSTDHAELLYWSLPQKNLVSLTA 709

Query: 183  LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
            +I+ Y +       +  F  M +  ++PD  +++S+L        I +G + H       
Sbjct: 710  IITSYAEAGNLGLVMESFSQMHQLNMKPDSVAMLSILHGIADPVHICIGHVFHGYAIKSG 769

Query: 243  LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
            L       N L+ MY K  +V     +F  M E+ +++W S+I+G    G   +A+ LF 
Sbjct: 770  LDTFNLVTNGLISMYSKFNNVEALFGLFSGMHEKPLISWNSVISGCVQAGRASHAIELFC 829

Query: 303  LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
             M+  G  P+++TI SLLS CS L YL+ G  LH++ ++  LE E  V TALI MY KC 
Sbjct: 830  QMKMHGCNPDAITIASLLSGCSQLGYLQFGERLHSYILRNKLEMEDFVGTALIHMYTKCG 889

Query: 363  LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
             +  + +VF    K     WNA+++G    G   KA+  + +M  + VEP+  T   +L 
Sbjct: 890  SIVHAERVFKSIGKPCLATWNAMISGYSCYGFEHKALTCYSEMQEQGVEPDKITFLGVLA 949

Query: 423  AYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            A      + +       + + Y  +  ++    ++ + ++ G  E A  +F +   K+ D
Sbjct: 950  ACTHGGLIHEGRRYFQIMTKVYDMVPTLQHCACMVGLLARVGLFEEA-LLFIKNMEKEPD 1008

Query: 482  IVVWSVIIAGYGMH 495
              VW   ++   +H
Sbjct: 1009 SAVWGAFLSACCIH 1022



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 4/163 (2%)

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           +A+ I  +LI+ G    V VST L+D+Y K G +  AH  F  +PI  +D+V W+ +I G
Sbjct: 460 EAIQIQNHLIKRGIDQFVYVSTALLDLYMKLGRVSYAHNAFDYMPI--RDVVSWNALICG 517

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           Y  +G+  +A+ LF +M++ G  P + T    L +C    L+ +G  +  F +++     
Sbjct: 518 YSRNGYDFSALELFVQMLKLGFCPRQTTLVGLLPSCGQLELVFQGKSIHGFGIKSGLHLD 577

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
                  +  +  + G L+ A  L   M +  +   W  ++GA
Sbjct: 578 -PQVKNALTSMYAKCGDLEAAEYLFEEM-MDKSVVSWNTMIGA 618


>gi|297737195|emb|CBI26396.3| unnamed protein product [Vitis vinifera]
          Length = 667

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 186/553 (33%), Positives = 306/553 (55%), Gaps = 7/553 (1%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
             +T+P V+KAC  L   +    LH  +L+TGF    FV   L+ +Y       +AR VF
Sbjct: 27  SEFTFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFVQTALVDVYSKCCCFHSARLVF 86

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           D M   S+VSWN++IS + ++ +  ++  +   M   G+E   A+    L +C     + 
Sbjct: 87  DQMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLASC----SLP 142

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
            G  IH  +    L  ++   N+++ MY++   ++ A  VF  + ++ +V+WT ++ GY 
Sbjct: 143 QGLSIHGYITKLGLDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVSWTIILGGYL 202

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
             GDV     +F  M+ + V P+S+   +L+S C     L     +H+  +K   + +  
Sbjct: 203 SAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHSLLLKSGFDHKDP 262

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           ++  L+ MYAKC  +  + +VF    +K    W ++++G    G   +A+ LF  +L   
Sbjct: 263 IDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEALHLFNMLLRTA 322

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
             PN+ TL ++L A A +  L+    I  Y++  G  S + V T LI ++ KCGS++ A 
Sbjct: 323 SRPNELTLATVLSACAEMGSLRMGEEIEQYILLNGLGSDLRVQTSLIHMFCKCGSIKKAQ 382

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV-QSGVQPNEVTFTSALHACS 528
            +F  IP  +KD+ VWS +I GY +HG G+ A++LF +M  + G++P+ + +TS L ACS
Sbjct: 383 ALFERIP--NKDLAVWSAMINGYAVHGMGKEALNLFHKMQNEVGIKPDAIVYTSVLLACS 440

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           H GL+++GL  F  M ++        HY+C+VDLLGRAG ++ A   I+ MP+     VW
Sbjct: 441 HSGLIEDGLKYFRSMQKDFGIEPSIQHYSCLVDLLGRAGYVELALRTIQEMPVLVQARVW 500

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
              L AC  H N+ELGE AAK LF+LEP + GN+VL++ LY+++ +WK+A   R +++ +
Sbjct: 501 APFLSACYTHHNLELGEFAAKNLFDLEPRSTGNFVLMTNLYTSMGKWKEAAKARSIINAR 560

Query: 649 GLRKAPAHSLIEV 661
           GL K P  S IE+
Sbjct: 561 GLVKEPGWSQIEI 573



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 196/394 (49%), Gaps = 8/394 (2%)

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
           SGV     +   VL AC  L  +E    +H  +       ++    ALVD+Y KC   + 
Sbjct: 22  SGVHGSEFTFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFVQTALVDVYSKCCCFHS 81

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           ARLVFD+M  + +V+W S+I+ +  +  +  + G+ + MQ  G+  +S T    L++CS 
Sbjct: 82  ARLVFDQMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLASCS- 140

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
              L +G S+H +  K  L+  + +  +++ MY + N +  +  VF    +K  V W  I
Sbjct: 141 ---LPQGLSIHGYITKLGLDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVSWTII 197

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           L G +  G   K   +F QM  + V P+     +L+    +  +L  AM +H  L++ GF
Sbjct: 198 LGGYLSAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHSLLLKSGF 257

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
                +   L+ +Y+KC  L SA ++F    + +K + +W+ +I+GY   G+   A+ LF
Sbjct: 258 DHKDPIDNLLVAMYAKCKDLVSARRVFDA--VHEKSVFLWTSMISGYAQFGYPNEALHLF 315

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
             ++++  +PNE+T  + L AC+  G L  G ++  ++L N    S     T ++ +  +
Sbjct: 316 NMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQYILLNGLG-SDLRVQTSLIHMFCK 374

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            G + +A  L   +P K   AVW A++    +HG
Sbjct: 375 CGSIKKAQALFERIPNKDL-AVWSAMINGYAVHG 407



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 192/381 (50%), Gaps = 22/381 (5%)

Query: 23  YAATKSIAGTKQLHAFIITSG-----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFL 77
           + A+ S+     +H +I   G     PL   + S  +R    +     +F  + ++S   
Sbjct: 135 FLASCSLPQGLSIHGYITKLGLDLHLPLANSIMSMYIR-LNQIDGALSVFYTLHQKSIVS 193

Query: 78  YNTVMKMYAQNGASHDSLKMF--LGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHG 135
           +  ++  Y   G   D  K+F     +R     PD+  +  +I  C       L + +H 
Sbjct: 194 WTIILGGYLSAG---DVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHS 250

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
            +L +GFD    + N L+AMY    ++ +AR+VFDA+ E SV  W ++ISGY +  Y  E
Sbjct: 251 LLLKSGFDHKDPIDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNE 310

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           AL +F+ +L++   P+  ++ +VL AC  +  + MG  I + +    LG ++    +L+ 
Sbjct: 311 ALHLFNMLLRTASRPNELTLATVLSACAEMGSLRMGEEIEQYILLNGLGSDLRVQTSLIH 370

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE-GVRPNSL 314
           M+ KCGS+ +A+ +F+R+  +D+  W++MINGYA++G  + AL LF  MQ E G++P+++
Sbjct: 371 MFCKCGSIKKAQALFERIPNKDLAVWSAMINGYAVHGMGKEALNLFHKMQNEVGIKPDAI 430

Query: 315 TIGSLLSACSSLYYLKRG-RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
              S+L ACS    ++ G +   +      +E  +   + L+D+  +   V+L+     R
Sbjct: 431 VYTSVLLACSHSGLIEDGLKYFRSMQKDFGIEPSIQHYSCLVDLLGRAGYVELAL----R 486

Query: 374 TSKKKTV-----PWNAILAGC 389
           T ++  V      W   L+ C
Sbjct: 487 TIQEMPVLVQARVWAPFLSAC 507


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 211/618 (34%), Positives = 335/618 (54%), Gaps = 60/618 (9%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N  +  + +NG    +L++F  M R       + ++  +I  C  L+  K  +A   R 
Sbjct: 52  WNIAITNHMRNGQCDSALRLFNSMPRRS-----SISWNAMISGC--LSNDKFYLA---RQ 101

Query: 138 LITGFDMDTFVG-NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEA 196
           L         V  N +I+  + +  ++AAR +FD M E  VVSWN ++SGY +N Y KEA
Sbjct: 102 LFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEA 161

Query: 197 LVVFDWMLKSGVEPDCASVVS---VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
             +FD       E  C + +S   +L A      IE  R + E  A   L     +WN +
Sbjct: 162 KEIFD-------EMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWEL----ISWNCM 210

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ-------- 305
           +  YVK   + +AR +FDRM ERD V+W +MI+GYA NG++  A  LF+           
Sbjct: 211 MGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWT 270

Query: 306 ------------------FEGV-RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346
                             F+G+   NS++  ++++      Y++  R   A  + + + C
Sbjct: 271 AMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAG-----YVQCKRMDQARELFEAMPC 325

Query: 347 EVIVE-TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
           + +     +I  YA+   +  +   F R  ++ ++ W AI+AG   +G   +A+ LF +M
Sbjct: 326 QNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 385

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
             +    N +T  S L   A +A L+    +H  +++ G  S   V   L+ +Y KCG++
Sbjct: 386 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNI 445

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
           + A+ +F    I++K++V W+ +IAGY  HG G+ A+ LF+ M ++G+ P++VT    L 
Sbjct: 446 DDAYIVFE--GIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLS 503

Query: 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           ACSH GL+D+G + F  M +++   + + HYTC++DLLGRAGRLD+A +L++ MP +P  
Sbjct: 504 ACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDA 563

Query: 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645
           A WGALLGA  IHGN ELGE AAK +FE+EP+N G YVLLS LY+A  RW D   +R  M
Sbjct: 564 ATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRM 623

Query: 646 DEKGLRKAPAHSLIEVRN 663
            ++G++K P +S +EV+N
Sbjct: 624 RDRGVKKVPGYSWVEVQN 641



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/458 (27%), Positives = 221/458 (48%), Gaps = 28/458 (6%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G+V   + +FDEM  ++S  +N ++  Y QNG   D+ ++F       E   D   + ++
Sbjct: 156 GYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF-------ESKAD---WELI 205

Query: 118 IKACTDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
              C    + K    +  R +     + D    N +I+ Y   GE+  A+++F+      
Sbjct: 206 SWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRD 265

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL--KEIEMGRMI 234
           V +W  ++SGY +N    EA  VFD M      P+  SV       GY+  K ++  R +
Sbjct: 266 VFTWTAMVSGYVQNGMLDEARRVFDGM------PEKNSVSWNAIIAGYVQCKRMDQAREL 319

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
            E +      +N+++WN ++  Y + G + +AR  FDRM +RD ++W ++I GYA +G  
Sbjct: 320 FEAMP----CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYG 375

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             AL LF  M+ +G R N  T  S LS C+ +  L+ G+ +H   +K  LE    V  AL
Sbjct: 376 EEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNAL 435

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           + MY KC  +  ++ VF    +K+ V WN ++AG   +G  ++A+ LF  M    + P+D
Sbjct: 436 LVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDD 495

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
            T+  +L A +    + +       + + YG  +  +  T +ID+  + G L+ A  +  
Sbjct: 496 VTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMK 555

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGH---GETAVSLFKEM 508
            +P  + D   W  ++    +HG+   GE A  +  EM
Sbjct: 556 NMPF-EPDAATWGALLGASRIHGNTELGEKAAKMIFEM 592



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 160/369 (43%), Gaps = 52/369 (14%)

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           K  + N+ +      ++ D+V W   I  +  NG   +AL LF  M     R +S++  +
Sbjct: 30  KPSTRNQPKTTSSLATDADIVKWNIAITNHMRNGQCDSALRLFNSMP----RRSSISWNA 85

Query: 319 LLSACSS--LYYLKRG-------RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
           ++S C S   +YL R        R L +W +             +I    +   ++ +  
Sbjct: 86  MISGCLSNDKFYLARQLFEKMPTRDLVSWNV-------------MISGCVRYRNLRAARL 132

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           +F +  ++  V WNA+L+G   NG  ++A E+F +M  +    N  + N +L AY     
Sbjct: 133 LFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAYVQNGR 188

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           ++ A  +      +  +S   +  G    Y K   L  A  IF  +P  ++D V W+ +I
Sbjct: 189 IEDARRLFESKADWELISWNCMMGG----YVKRNRLVDARGIFDRMP--ERDEVSWNTMI 242

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           +GY  +G    A  LF+E     V     T+T+ +      G+LDE   +F+ M E +  
Sbjct: 243 SGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEARRVFDGMPEKNSV 298

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVA-A 608
                 +  I+    +  R+D+A +L   MP +   + W  +     I G  + G++A A
Sbjct: 299 S-----WNAIIAGYVQCKRMDQARELFEAMPCQNVSS-WNTM-----ITGYAQNGDIAQA 347

Query: 609 KWLFELEPE 617
           +  F+  P+
Sbjct: 348 RNFFDRMPQ 356


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 214/638 (33%), Positives = 338/638 (52%), Gaps = 14/638 (2%)

Query: 33  KQLHAFIITSGPLFTHLR--SSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQ 87
           KQLHA  +  G     +R  +SLV  Y +  +V   R +F+ M +R+   + +++  Y Q
Sbjct: 75  KQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQ 134

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
            G   D + +F  M   G + P+ +T+  V+          LG  +H + +  G     F
Sbjct: 135 AGVLLDVMSLFFRMRAEGVW-PNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVF 193

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           V N L+ MY   G V+ AR VF  M    +VSWNTL++G   N    EAL +F     S 
Sbjct: 194 VCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSI 253

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
                ++  +V+  C  LK + + R +H  V             AL+D Y K G +++A 
Sbjct: 254 TMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKAL 313

Query: 268 LVFDRMS-ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
            VF  MS  ++VV+WT+MI+G   NGD+  A  LF  M+ +GV PN LT  ++L+   + 
Sbjct: 314 DVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTVSEAS 373

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
           +  +    +HA  IK N EC   V TAL+  Y+K    + +  +F    +K  V W+A+L
Sbjct: 374 FPPQ----IHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAML 429

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA-ILADLQQAMNIHCYLIRYGF 445
                 G    A   F +M +  ++PN+ T++S + A A   A +      H   I++  
Sbjct: 430 TCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRC 489

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
              + VS+ L+ +Y++ GS+E+A  +F      D+D++ W+ +++GY  HG+ + A+ +F
Sbjct: 490 HDALCVSSALVSMYARKGSIENAQCVFERQ--TDRDLLSWNSMLSGYAQHGYSQKALDVF 547

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
           ++M   G+  + +TF S +  C+H GL++EG   F+ M+ ++      DHY C+VDL  R
Sbjct: 548 RQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSR 607

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           AG+LDE   LI  MP      +W ALLGAC +H NVELG++AA+ L  LEP +   YVLL
Sbjct: 608 AGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLL 667

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           S +YSA  +WK+ + VR +MD K +RK    S I+++N
Sbjct: 668 SNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKN 705


>gi|302766259|ref|XP_002966550.1| hypothetical protein SELMODRAFT_399 [Selaginella moellendorffii]
 gi|300165970|gb|EFJ32577.1| hypothetical protein SELMODRAFT_399 [Selaginella moellendorffii]
          Length = 732

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 205/604 (33%), Positives = 325/604 (53%), Gaps = 14/604 (2%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+H +++ +G  L T L ++LV  Y   G V    ++  EM +R    +N ++  YAQ+
Sbjct: 136 RQVHGYVLEAGMSLDTSLGNALVDMYCKTGDVDEADLVLREMPKRDVISWNIMISGYAQS 195

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   + L+    M + G  +P   TY  ++ AC+       G ++H  V+  G D D  V
Sbjct: 196 GDCKEGLRCLWRMQQDG-LSPTKVTYATLLNACSSGEDLGEGKSIHRSVVDMGLDRDEVV 254

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            + L+ MY   G ++  ++    + E + ++WNT+I  Y + +   +AL  F  M   GV
Sbjct: 255 KSFLLGMYGKCGSLEDVKRSSCEVHERNTIAWNTIIGAYARYSDHFQALRSFQQMQLQGV 314

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG-KNIAAWNALVDMYVKCGSVNEAR 267
           + D  + V +L  C     +  G ++H+ ++  +LG ++I   N+L  MY KCGS++ AR
Sbjct: 315 KADAVTFVLMLGTCSSPAHLAQGILLHDWIS--QLGFESIIVHNSLTAMYAKCGSLDAAR 372

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +F+ M  R+ V+W S+I+    +G   +A   FQ M+ EG RP+ +T  S+L AC+   
Sbjct: 373 KMFEGMPSRNSVSWNSLISAAIQHGCYADAHKFFQRMKLEGSRPDEVTCISMLDACTKQA 432

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
             K G S+H   ++   +    V  ALI MYAK    + +  VF   +++ TV WN ILA
Sbjct: 433 NAKEGSSIHQMVVESGFDKRTGVANALIFMYAKLGDHEAARNVFDAMAERNTVSWNTILA 492

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
             V  GL R AVE+F +M  +V       + +L     +   L     IH Y++ +GF +
Sbjct: 493 AYVEKGLNRDAVEMFWKM--DVARDKVTYVAALDACSGLAGGLAHGKLIHGYMLDHGFSN 550

Query: 448 VVEV--STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
            ++   +T L+++Y KCGSL+ A KIF E+    +D+V W+ +I  Y  H   E A+ L 
Sbjct: 551 RLDTVAATALVNMYGKCGSLQEARKIFDEML--HRDVVTWTSLIVAYAQHSEIEQALKLV 608

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
           K M Q GV+ ++V F S L  C H GLL+EG   F  M++++    R +HY CI+D+LGR
Sbjct: 609 KIMEQDGVKVDDVVFLSILSGCDHSGLLEEGCKYFVSMIDDYGISPRLEHYNCIIDVLGR 668

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           AG LD A  L+  +P +    VW  LL AC +HGN E G+ AA+ +  L+P  P  YV+L
Sbjct: 669 AGHLDLAEKLVDRLPSRSDSKVWMTLLAACRMHGNPERGKRAARRITLLDPSIPAAYVVL 728

Query: 626 SKLY 629
           S +Y
Sbjct: 729 SNIY 732



 Score =  245 bits (625), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 175/580 (30%), Positives = 291/580 (50%), Gaps = 25/580 (4%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAYGHV---SNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +++HA+I  SG     +  ++L+  YG      +   LF  M   +   + +V+  +AQ 
Sbjct: 38  RKVHAYIRESGLETDIYAANALINMYGKCRSPEDAFQLFSRMESPNVVSWTSVIGNFAQY 97

Query: 89  G-ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC--TDLAWRKLGIALHGRVLITGFDMD 145
           G    +S+ +F  M  L    P+  T   V++AC  TD      G  +HG VL  G  +D
Sbjct: 98  GHLGRESVLLFRKM-ELEGIRPNLITMVAVLRACNLTD------GRQVHGYVLEAGMSLD 150

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
           T +GN L+ MY   G+V  A  V   M +  V+SWN +ISGY ++   KE L     M +
Sbjct: 151 TSLGNALVDMYCKTGDVDEADLVLREMPKRDVISWNIMISGYAQSGDCKEGLRCLWRMQQ 210

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
            G+ P   +  ++L AC   +++  G+ IH  V    L ++    + L+ MY KCGS+ +
Sbjct: 211 DGLSPTKVTYATLLNACSSGEDLGEGKSIHRSVVDMGLDRDEVVKSFLLGMYGKCGSLED 270

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
            +     + ER+ + W ++I  YA   D   AL  FQ MQ +GV+ +++T   +L  CSS
Sbjct: 271 VKRSSCEVHERNTIAWNTIIGAYARYSDHFQALRSFQQMQLQGVKADAVTFVLMLGTCSS 330

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
             +L +G  LH W  +   E  +IV  +L  MYAKC  +  + ++F     + +V WN++
Sbjct: 331 PAHLAQGILLHDWISQLGFE-SIIVHNSLTAMYAKCGSLDAARKMFEGMPSRNSVSWNSL 389

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           ++  + +G    A + F++M +E   P++ T  S+L A    A+ ++  +IH  ++  GF
Sbjct: 390 ISAAIQHGCYADAHKFFQRMKLEGSRPDEVTCISMLDACTKQANAKEGSSIHQMVVESGF 449

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
                V+  LI +Y+K G  E+A  +F    + +++ V W+ I+A Y   G    AV +F
Sbjct: 450 DKRTGVANALIFMYAKLGDHEAARNVFD--AMAERNTVSWNTILAAYVEKGLNRDAVEMF 507

Query: 506 KEMVQSGVQPNEVTFTSALHACSH-GGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDL 562
            +M    V  ++VT+ +AL ACS   G L  G  +  +ML+ H   +R D    T +V++
Sbjct: 508 WKM---DVARDKVTYVAALDACSGLAGGLAHGKLIHGYMLD-HGFSNRLDTVAATALVNM 563

Query: 563 LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
            G+ G L EA  +   M L      W +L+ A   H  +E
Sbjct: 564 YGKCGSLQEARKIFDEM-LHRDVVTWTSLIVAYAQHSEIE 602



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 147/499 (29%), Positives = 254/499 (50%), Gaps = 10/499 (2%)

Query: 102 LRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGE 161
           ++L    PD+ T+   ++ACT       G  +H  +  +G + D +  N LI MY     
Sbjct: 9   MQLEGVRPDSVTFVTCLRACTVEGALDDGRKVHAYIRESGLETDIYAANALINMYGKCRS 68

Query: 162 VKAARKVFDAMWEHSVVSWNTLISGYFKNAY-AKEALVVFDWMLKSGVEPDCASVVSVLP 220
            + A ++F  M   +VVSW ++I  + +  +  +E++++F  M   G+ P+  ++V+VL 
Sbjct: 69  PEDAFQLFSRMESPNVVSWTSVIGNFAQYGHLGRESVLLFRKMELEGIRPNLITMVAVLR 128

Query: 221 ACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT 280
           AC     +  GR +H  V    +  + +  NALVDMY K G V+EA LV   M +RDV++
Sbjct: 129 AC----NLTDGRQVHGYVLEAGMSLDTSLGNALVDMYCKTGDVDEADLVLREMPKRDVIS 184

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           W  MI+GYA +GD +  L     MQ +G+ P  +T  +LL+ACSS   L  G+S+H   +
Sbjct: 185 WNIMISGYAQSGDCKEGLRCLWRMQQDGLSPTKVTYATLLNACSSGEDLGEGKSIHRSVV 244

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
              L+ + +V++ L+ MY KC  ++   +      ++ T+ WN I+          +A+ 
Sbjct: 245 DMGLDRDEVVKSFLLGMYGKCGSLEDVKRSSCEVHERNTIAWNTIIGAYARYSDHFQALR 304

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
            F+QM ++ V+ +  T   +L   +  A L Q + +H ++ + GF S++ V   L  +Y+
Sbjct: 305 SFQQMQLQGVKADAVTFVLMLGTCSSPAHLAQGILLHDWISQLGFESII-VHNSLTAMYA 363

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           KCGSL++A K+F  +P ++   V W+ +I+    HG    A   F+ M   G +P+EVT 
Sbjct: 364 KCGSLDAARKMFEGMPSRNS--VSWNSLISAAIQHGCYADAHKFFQRMKLEGSRPDEVTC 421

Query: 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
            S L AC+      EG  +   ++E+     R      ++ +  + G  + A ++   M 
Sbjct: 422 ISMLDACTKQANAKEGSSIHQMVVESGFD-KRTGVANALIFMYAKLGDHEAARNVFDAMA 480

Query: 581 LKPTHAVWGALLGACVIHG 599
            + T   W  +L A V  G
Sbjct: 481 ERNT-VSWNTILAAYVEKG 498



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/473 (27%), Positives = 231/473 (48%), Gaps = 21/473 (4%)

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           +AL ++  M   GV PD  + V+ L AC     ++ GR +H  +    L  +I A NAL+
Sbjct: 1   QALELYKRMQLEGVRPDSVTFVTCLRACTVEGALDDGRKVHAYIRESGLETDIYAANALI 60

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV-RNALGLFQLMQFEGVRPNS 313
           +MY KC S  +A  +F RM   +VV+WTS+I  +A  G + R ++ LF+ M+ EG+RPN 
Sbjct: 61  NMYGKCRSPEDAFQLFSRMESPNVVSWTSVIGNFAQYGHLGRESVLLFRKMELEGIRPNL 120

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
           +T+ ++L AC+    L  GR +H + ++  +  +  +  AL+DMY K   V  +  V   
Sbjct: 121 ITMVAVLRACN----LTDGRQVHGYVLEAGMSLDTSLGNALVDMYCKTGDVDEADLVLRE 176

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
             K+  + WN +++G   +G  ++ +    +M  + + P   T  +LL A +   DL + 
Sbjct: 177 MPKRDVISWNIMISGYAQSGDCKEGLRCLWRMQQDGLSPTKVTYATLLNACSSGEDLGEG 236

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
            +IH  ++  G      V + L+ +Y KCGSLE   +  S   + +++ + W+ II  Y 
Sbjct: 237 KSIHRSVVDMGLDRDEVVKSFLLGMYGKCGSLEDVKR--SSCEVHERNTIAWNTIIGAYA 294

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
            +     A+  F++M   GV+ + VTF   L  CS    L +G+ L +++  +       
Sbjct: 295 RYSDHFQALRSFQQMQLQGVKADAVTFVLMLGTCSSPAHLAQGILLHDWI--SQLGFESI 352

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
             +  +  +  + G LD A  +   MP + +   W +L+ A + HG        A   F+
Sbjct: 353 IVHNSLTAMYAKCGSLDAARKMFEGMPSRNS-VSWNSLISAAIQHGCY----ADAHKFFQ 407

Query: 614 ---LEPENPGNYVLLSKLYSAVRR--WKDAENVRDVMDEKGL--RKAPAHSLI 659
              LE   P     +S L +  ++   K+  ++  ++ E G   R   A++LI
Sbjct: 408 RMKLEGSRPDEVTCISMLDACTKQANAKEGSSIHQMVVESGFDKRTGVANALI 460


>gi|357148978|ref|XP_003574958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 598

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/585 (32%), Positives = 322/585 (55%), Gaps = 2/585 (0%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N ++++ A +G+    L+ ++ +L  G +  D  T+P + K+C  L   +LG ++H   
Sbjct: 13  WNRLIQLAAASGSYSRCLRHYVPLLAAGLHG-DASTFPSLAKSCAALRLPRLGCSVHAHA 71

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           L+ G   D FV   L+ MY     +  AR++FD M   +++SWN +++ Y K++   EA+
Sbjct: 72  LLVGAASDVFVLTSLLDMYAKCACLPDARRLFDEMPSPTLISWNCMVTAYSKSSCVTEAV 131

Query: 198 VVFDWMLKSGVEPDCASVVSVLPA-CGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
            +F+ M   GV P  A++V +L      L     G  ++       L  ++   N+++ M
Sbjct: 132 AMFNTMRGVGVRPSGATLVGLLSGRVDSLSTRNPGLCLYGYSMKSGLDTDLPVLNSVLTM 191

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
            V+ G + +A L+FD M E+ VVTW++M++G+   GD     GLF  MQ  G + +S+ +
Sbjct: 192 LVRAGQLYDACLLFDSMHEKSVVTWSAMVSGFLQTGDYMKVFGLFNHMQTAGYKFDSVAL 251

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
            +L+SA   L  L   + +HA  IK   E E  + ++L+++YAKC  ++ + +VF    +
Sbjct: 252 VNLISAAVLLGNLLVAKGVHALLIKSGFESEQDLMSSLVNLYAKCGDLEAAQEVFDAVHR 311

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           K  V W ++++G    G   KA+++F  ML   VEPN+AT++S+L A A L    QA  +
Sbjct: 312 KNVVLWTSMISGYAEGGHPDKALKMFDSMLCTDVEPNEATVSSVLSACANLGSANQAKKV 371

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
             +++  G    + V+TGLID Y KCG++  A +IF  +   ++D+ +WS +I GY   G
Sbjct: 372 EDHVVAIGLQKDLRVATGLIDTYCKCGNVTLAREIFDGVTTTNRDLAIWSAMINGYACIG 431

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
            G  A+ LF EM   GVQP+ + FT  L AC++ GL+DEGL  F  +   +      +HY
Sbjct: 432 EGSEALVLFNEMQNQGVQPDAIVFTHLLTACNYSGLVDEGLQCFRSLTVEYGIEPSIEHY 491

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
            C +DLL +AG L  A +  R +P++  + V   +L A   H      E+ ++ L  LEP
Sbjct: 492 MCTIDLLCKAGHLSAAKEFFRKIPIQLQNQVLAPILTAYSAHCADSSIELVSEELLNLEP 551

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            N  + VL++ + + + +WK A + R ++ ++GL K P  S IE+
Sbjct: 552 HNSDHCVLMANMLNCLGKWKKATDYRRLITKQGLVKEPGRSCIEM 596



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/349 (30%), Positives = 186/349 (53%), Gaps = 14/349 (4%)

Query: 35  LHAFIITSG-----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           L+ + + SG     P+   + + LVRA G + +  +LFD M E+S   ++ ++  + Q G
Sbjct: 169 LYGYSMKSGLDTDLPVLNSVLTMLVRA-GQLYDACLLFDSMHEKSVVTWSAMVSGFLQTG 227

Query: 90  ASHDSLKMF--LGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
              D +K+F     ++   Y  D+     +I A   L    +   +H  ++ +GF+ +  
Sbjct: 228 ---DYMKVFGLFNHMQTAGYKFDSVALVNLISAAVLLGNLLVAKGVHALLIKSGFESEQD 284

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           + + L+ +Y   G+++AA++VFDA+   +VV W ++ISGY +  +  +AL +FD ML + 
Sbjct: 285 LMSSLVNLYAKCGDLEAAQEVFDAVHRKNVVLWTSMISGYAEGGHPDKALKMFDSMLCTD 344

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           VEP+ A+V SVL AC  L      + + + V    L K++     L+D Y KCG+V  AR
Sbjct: 345 VEPNEATVSSVLSACANLGSANQAKKVEDHVVAIGLQKDLRVATGLIDTYCKCGNVTLAR 404

Query: 268 LVFDRM--SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
            +FD +  + RD+  W++MINGYA  G+   AL LF  MQ +GV+P+++    LL+AC+ 
Sbjct: 405 EIFDGVTTTNRDLAIWSAMINGYACIGEGSEALVLFNEMQNQGVQPDAIVFTHLLTACNY 464

Query: 326 LYYLKRG-RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
              +  G +   + T++  +E  +      ID+  K   +  + + F +
Sbjct: 465 SGLVDEGLQCFRSLTVEYGIEPSIEHYMCTIDLLCKAGHLSAAKEFFRK 513



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 114/248 (45%), Gaps = 8/248 (3%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           K +HA +I SG      L SSLV  Y   G +   + +FD +  ++  L+ +++  YA+ 
Sbjct: 268 KGVHALLIKSGFESEQDLMSSLVNLYAKCGDLEAAQEVFDAVHRKNVVLWTSMISGYAEG 327

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G    +LKMF  ML   +  P+  T   V+ AC +L        +   V+  G   D  V
Sbjct: 328 GHPDKALKMFDSML-CTDVEPNEATVSSVLSACANLGSANQAKKVEDHVVAIGLQKDLRV 386

Query: 149 GNCLIAMYMNFGEVKAARKVFDAM--WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
              LI  Y   G V  AR++FD +      +  W+ +I+GY       EALV+F+ M   
Sbjct: 387 ATGLIDTYCKCGNVTLAREIFDGVTTTNRDLAIWSAMINGYACIGEGSEALVLFNEMQNQ 446

Query: 207 GVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
           GV+PD      +L AC Y   ++ G +    L     +  +I  +   +D+  K G ++ 
Sbjct: 447 GVQPDAIVFTHLLTACNYSGLVDEGLQCFRSLTVEYGIEPSIEHYMCTIDLLCKAGHLSA 506

Query: 266 ARLVFDRM 273
           A+  F ++
Sbjct: 507 AKEFFRKI 514


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 188/541 (34%), Positives = 302/541 (55%), Gaps = 13/541 (2%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +H  V+ TG   + FV + L+ +Y   G +  ARKVFD +   +VV W TL++GY +N+ 
Sbjct: 2   VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQ 61

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            + A+ VF  ML+SG  P   ++   L AC  L+ I +G+  H  +   R+  + +  NA
Sbjct: 62  PEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNA 121

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L  +Y K GS++ +   F    E+DV++WT++I+    NG     L LF  M FE V PN
Sbjct: 122 LCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEPN 181

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
             T+ S+LS CS++     G  +H+ + K   E  + +  +L+ +Y KC  +  +  +F 
Sbjct: 182 DFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLFN 241

Query: 373 RTSKKKTVPWNAILAGCVHN-GLAR----------KAVELFRQMLVEVVEPNDATLNSLL 421
           R   K  + WNA++AG      LA+          +A+ ++ ++     +P+  TL+S+L
Sbjct: 242 RMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSIL 301

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
              + LA L+Q   IH   I+ GFLS V V T L+D+Y KCGS+E A K F  + +  + 
Sbjct: 302 TVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAF--LDMSTRT 359

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           ++ W+ +I  +  HG  + A+ LF++M  +G +PN++TF   L ACSH G++DE L+ F 
Sbjct: 360 LISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEYFE 419

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            M + ++     DHY C+VD+  R GRLDEA+D+I+ M ++P   +W  L+  C  HGN 
Sbjct: 420 IMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGNE 479

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           ELG  AA+ L +L+P +   YV+L  +Y +  RW+D   VR +M E+ + K    S I +
Sbjct: 480 ELGFYAAEQLLKLKPRSTETYVVLLNMYISAERWEDVSMVRRLMKEEKVGKLKDWSRISI 539

Query: 662 R 662
           +
Sbjct: 540 K 540



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 143/484 (29%), Positives = 250/484 (51%), Gaps = 24/484 (4%)

Query: 35  LHAFIITSGPLFTH----LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           +HA +I +G   TH    + S LV  Y   G + N R +FD +  R+  ++ T+M  Y Q
Sbjct: 2   VHAHVIKTG---THEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQ 58

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           N     ++++F  ML  G + P N+T  I + AC+ L    LG   H  ++      D+ 
Sbjct: 59  NSQPEVAVEVFGDMLESGSF-PSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSS 117

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           +GN L ++Y  FG + ++ K F    E  V+SW T+IS    N  A   L +F  ML   
Sbjct: 118 IGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFEN 177

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           VEP+  ++ SVL  C  ++  ++G  +H L        N+   N+LV +Y+KCG ++EA+
Sbjct: 178 VEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAK 237

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDV-----------RNALGLFQLMQFEGVRPNSLTI 316
            +F+RM  ++++TW +MI G+A   D+             ALG++  +   G +P+  T+
Sbjct: 238 NLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTL 297

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
            S+L+ CS L  L++G  +HA TIK     +V+V TAL+DMY KC  ++ + + F   S 
Sbjct: 298 SSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMST 357

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           +  + W +++     +G ++ A++LF  M +    PN  T   +L A +    + +A+  
Sbjct: 358 RTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEY 417

Query: 437 HCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
              + + Y    V++    L+D++ + G L+ A  +   + ++  +  +W ++IAG   H
Sbjct: 418 FEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEF-IWLLLIAGCRNH 476

Query: 496 GHGE 499
           G+ E
Sbjct: 477 GNEE 480



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 186/381 (48%), Gaps = 15/381 (3%)

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
           M+H  V      +     + LV++Y KCG +  AR VFD +  R+VV WT+++ GY  N 
Sbjct: 1   MVHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNS 60

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
               A+ +F  M   G  P++ T+   L+ACSSL  +  G+  HA+ IK  +  +  +  
Sbjct: 61  QPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGN 120

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           AL  +Y+K   +  S + F  T +K  + W  I++ C  NG A   + LF +ML E VEP
Sbjct: 121 ALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEP 180

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           ND TL S+L   + +      M +H    + G  S + ++  L+ +Y KCG ++ A  +F
Sbjct: 181 NDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLF 240

Query: 473 SEIPIKDKDIVVWSVIIAG-----------YGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
           + +    K+++ W+ +IAG           +     G  A+ ++ ++ +SG +P+  T +
Sbjct: 241 NRMEY--KNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLS 298

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581
           S L  CS    L++G  +    +++    S     T +VD+  + G ++ A      M  
Sbjct: 299 SILTVCSRLAALEQGEQIHAQTIKS-GFLSDVVVGTALVDMYDKCGSIERARKAFLDMST 357

Query: 582 KPTHAVWGALLGACVIHGNVE 602
           + T   W +++ +   HG  +
Sbjct: 358 R-TLISWTSMITSFARHGQSQ 377


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 180/557 (32%), Positives = 313/557 (56%), Gaps = 7/557 (1%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           D +    ++ ACT L   + G  LH  ++ITGF  D  +   L+ MY   G +  A++VF
Sbjct: 29  DKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVF 88

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           + M    + +W+++I+ Y +    + A+V++  M+  GVEP+  +    L  C  +  + 
Sbjct: 89  EGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLA 148

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
            GR IH+ +   ++ ++    ++L++MY+KC  + EAR VF+ M  R+V ++T+MI+ Y 
Sbjct: 149 DGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYV 208

Query: 290 LNGDVRNALGLFQLM-QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
             G+   AL LF  M + E + PN+ T  ++L A   L  L++GR +H     +  +  V
Sbjct: 209 QAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNV 268

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
           +V+ AL+ MY KC     + +VF   + +  + W +++A    +G  ++A+ LF++M   
Sbjct: 269 VVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM--- 325

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            VEP+  + +S L A A+L  L +   IH  ++    L+  ++ T L+ +Y++CGSL+ A
Sbjct: 326 DVEPSGVSFSSALNACALLGALDEGREIHHRVVEAN-LASPQMETSLLSMYARCGSLDDA 384

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            ++F+ +  K +D    + +IA +  HG  + A+ ++++M Q G+  + +TF S L ACS
Sbjct: 385 RRVFNRM--KTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFVSVLVACS 442

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           H  L+ +  D    ++ +H      +HY C+VD+LGR+GRL +A +L+ TMP +     W
Sbjct: 443 HTSLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQADAVAW 502

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
             LL  C  HG+++ GE AA+ +FEL P     YV LS +Y+A +R+ DA  VR  M+E+
Sbjct: 503 MTLLSGCKRHGDLDRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEER 562

Query: 649 GLRKAPAHSLIEVRNIL 665
           G+ +  A S IE+ N L
Sbjct: 563 GVTRPVAVSYIEIDNEL 579



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 153/526 (29%), Positives = 268/526 (50%), Gaps = 23/526 (4%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSG-----PLFTHLRSSLVRAYGHVSNVRILFDE 69
           +V  LV      +++   ++LH  +I +G     PL T L     +  G + + + +F+ 
Sbjct: 32  IVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKC-GSLDDAKRVFEG 90

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           M  +  F +++++  YA+ G    ++ ++  M+  G   P+  T+   +  C  +A    
Sbjct: 91  MEIKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEG-VEPNVVTFACALGGCASVAGLAD 149

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G A+H R+L +    D  + + L+ MY+   E+  ARKVF+ M   +V S+  +IS Y +
Sbjct: 150 GRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQ 209

Query: 190 NAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
                EAL +F  M K   +EP+  +  ++L A   L  +E GR +H  +A      N+ 
Sbjct: 210 AGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVV 269

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             NALV MY KCGS  EAR VFD M+ R+V++WTSMI  YA +G+ + AL LF+ M  E 
Sbjct: 270 VQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMDVE- 328

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
             P+ ++  S L+AC+ L  L  GR +H   ++ NL    + ET+L+ MYA+C  +  + 
Sbjct: 329 --PSGVSFSSALNACALLGALDEGREIHHRVVEANLASPQM-ETSLLSMYARCGSLDDAR 385

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA---YA 425
           +VF R   +     NA++A    +G  ++A+ ++R+M  E +  +  T  S+L A    +
Sbjct: 386 RVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFVSVLVACSHTS 445

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
           ++AD +  +     ++ +G + +VE    ++D+  + G L  A ++   +P +  D V W
Sbjct: 446 LVADCRDFL--QSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQ-ADAVAW 502

Query: 486 SVIIAGYGMHG---HGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
             +++G   HG    GE A     E+  +   P    F S ++A +
Sbjct: 503 MTLLSGCKRHGDLDRGERAARKVFELAPAETLP--YVFLSNMYAAA 546



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 131/421 (31%), Positives = 232/421 (55%), Gaps = 13/421 (3%)

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE--LVAG 240
           +I+   +     +AL ++  M + G+  D   V S++ AC  L+ +E GR +HE  ++ G
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
            R   +I    AL+ MY KCGS+++A+ VF+ M  +D+  W+S+I  YA  G    A+ L
Sbjct: 61  FR--TDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVL 118

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAK 360
           ++ M  EGV PN +T    L  C+S+  L  GR++H   +   +  + +++ +L++MY K
Sbjct: 119 YRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLK 178

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM-LVEVVEPNDATLNS 419
           C+ +  + +VF     +    + A+++  V  G   +A+ELF +M  VE +EPN  T  +
Sbjct: 179 CDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFAT 238

Query: 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479
           +L A   L +L++   +H +L   GF + V V   L+ +Y KCGS   A K+F  +    
Sbjct: 239 ILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTA-- 296

Query: 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
           ++++ W+ +IA Y  HG+ + A++LFK M    V+P+ V+F+SAL+AC+  G LDEG ++
Sbjct: 297 RNVISWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREI 353

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            + ++E +    + +  T ++ +  R G LD+A  +   M  +   +   A++ A   HG
Sbjct: 354 HHRVVEANLASPQME--TSLLSMYARCGSLDDARRVFNRMKTRDAFSC-NAMIAAFTQHG 410

Query: 600 N 600
            
Sbjct: 411 R 411


>gi|297800128|ref|XP_002867948.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313784|gb|EFH44207.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 919

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 218/694 (31%), Positives = 334/694 (48%), Gaps = 98/694 (14%)

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           +S+   +F  M  R    +NT+M     NG   +SL  F  M+  G+   DN T+  VI 
Sbjct: 229 LSSAECVFTHMEHRDIVSWNTIMTKCLANGYPRNSLIYFKSMIGSGQ-EADNVTFSCVIS 287

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFV--GNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           AC+ L    LG +LHG V+ +G+  +  V   N +I+MY   G+++AA  VF+ +    V
Sbjct: 288 ACSCLEELPLGESLHGLVIKSGYSPEAHVSVANSIISMYSKCGDIEAAETVFEELLCKDV 347

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPAC-------------G 223
           +SWN +++G   N   +EA  +   M     ++PD ++VVS+   C             G
Sbjct: 348 ISWNAILNGLSANGMFEEAFGILKEMQSVDKIQPDISTVVSITSICGDFCLSREGRAIHG 407

Query: 224 YLKEIEMGRMIHELVAG-----GRLG--------------KNIAAWNALVDMYVKCGSVN 264
           Y    EM     E++       G+ G              +++ +WN+++  + + G   
Sbjct: 408 YTVRREMQSRALEVINSVIDMYGKCGLTTQAEFLFKTTTHRDLVSWNSMISAFAQNGFTQ 467

Query: 265 EAR--------------------------------LVFDR-------------------- 272
           EA+                                L+F +                    
Sbjct: 468 EAKNLFREVVSEYTCSKFSLSTVLAILTSCDSSDSLIFGKSVHCWLQKLGDLTSAFLLLE 527

Query: 273 --MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYL 329
                RD+ +W S+I G A +G    +L  FQ M  EG +R + +T+   +SA  +L  +
Sbjct: 528 MIFETRDLTSWNSVIYGCASSGHHLESLRAFQAMSREGKIRHDLITLLGTISASGNLRLV 587

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
            +GR LH   IK   E +  ++  LI MY +C   + + +VF   S      WN +++  
Sbjct: 588 LQGRCLHGLAIKSLRELDTQLQNTLITMYGRCKDTESAVKVFGLISDPNLCSWNCVISAL 647

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
             N   R+  +LFR +    +EPN+ T   LL A   L      M  HC+LIR GF +  
Sbjct: 648 SQNKAGREVFQLFRNL---KLEPNEITFVGLLSASTQLGSTSYGMQAHCHLIRRGFQANP 704

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            VS  L+D+YS CG LE+  K+F    +K   I  W+ +I+ YG HG GE A+ LFKEM 
Sbjct: 705 FVSAALVDMYSSCGMLETGMKVFRNSGVKS--ISAWNSVISAYGFHGMGEKAMELFKEMS 762

Query: 510 --QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
              SG++PN+ TF S L ACSH G ++EGL  +N M E        +H  CIVD+LGRAG
Sbjct: 763 SGNSGMEPNKSTFISLLSACSHSGFINEGLRYYNQMEEKFGVKPVTEHRVCIVDMLGRAG 822

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
           +L EAY+ I  +       VWGALL AC  HG+ +LG   A+ LFE+EP+N   Y+ L+ 
Sbjct: 823 KLKEAYEFIIGIGEPQKAGVWGALLSACNYHGDTKLGTEVAEVLFEMEPDNASYYISLAN 882

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            Y  +  W +A  +R ++++  L+K P +S+I+V
Sbjct: 883 TYVGLGGWDEAVRLRKIVEDNALKKLPGYSVIDV 916



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 158/619 (25%), Positives = 285/619 (46%), Gaps = 74/619 (11%)

Query: 33  KQLHAFIITSGPLFTHLRSS-LVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQN 88
           + +H F +  G L     SS L+  YG   ++     LF E+ E+   ++N+++    QN
Sbjct: 97  RSIHCFALKCGFLQDLATSSKLLTIYGRTGDLVSSLGLFGELKEKDVIVWNSMITCLNQN 156

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G    ++ +F+ M+  G    D+ T  + + A + L   K    +H   + TG   D+ +
Sbjct: 157 GRYIAAVGLFVEMIHKGN-EFDSTTLLLAVSALSSLHLSKKCPMVHCLAIETGLVSDSSL 215

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+ +Y    ++ +A  VF  M    +VSWNT+++    N Y + +L+ F  M+ SG 
Sbjct: 216 CNALMNLYAKGEDLSSAECVFTHMEHRDIVSWNTIMTKCLANGYPRNSLIYFKSMIGSGQ 275

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELV--AGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           E D  +   V+ AC  L+E+ +G  +H LV  +G     +++  N+++ MY KCG +  A
Sbjct: 276 EADNVTFSCVISACSCLEELPLGESLHGLVIKSGYSPEAHVSVANSIISMYSKCGDIEAA 335

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ-FEGVRPNSLTIGSLLSACSS 325
             VF+ +  +DV++W +++NG + NG    A G+ + MQ  + ++P+  T+ S+ S C  
Sbjct: 336 ETVFEELLCKDVISWNAILNGLSANGMFEEAFGILKEMQSVDKIQPDISTVVSITSICGD 395

Query: 326 LYYLKRGRSLHAWTIKQNLECEVI-VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
               + GR++H +T+++ ++   + V  ++IDMY KC L   +  +F  T+ +  V WN+
Sbjct: 396 FCLSREGRAIHGYTVRREMQSRALEVINSVIDMYGKCGLTTQAEFLFKTTTHRDLVSWNS 455

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA------MNIHC 438
           +++    NG  ++A  LFR    EVV     +  SL    AIL     +       ++HC
Sbjct: 456 MISAFAQNGFTQEAKNLFR----EVVSEYTCSKFSLSTVLAILTSCDSSDSLIFGKSVHC 511

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           +L                    K G L SA  +  E+  + +D+  W+ +I G    GH 
Sbjct: 512 WL-------------------QKLGDLTSAFLLL-EMIFETRDLTSWNSVIYGCASSGHH 551

Query: 499 ETAVSLFKEMVQSG-VQPNEVTFTSALHA-----------CSHG----GLLDEGLDLFNF 542
             ++  F+ M + G ++ + +T    + A           C HG     L +    L N 
Sbjct: 552 LESLRAFQAMSREGKIRHDLITLLGTISASGNLRLVLQGRCLHGLAIKSLRELDTQLQNT 611

Query: 543 MLENHQTCSRAD---------------HYTCIVDLLG--RAGRLDEAYDLIRTMPLKPTH 585
           ++  +  C   +                + C++  L   +AGR  E + L R + L+P  
Sbjct: 612 LITMYGRCKDTESAVKVFGLISDPNLCSWNCVISALSQNKAGR--EVFQLFRNLKLEPNE 669

Query: 586 AVWGALLGACVIHGNVELG 604
             +  LL A    G+   G
Sbjct: 670 ITFVGLLSASTQLGSTSYG 688



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            VE +   L  +L ++ +  + +   +IHC+ ++ GFL  +  S+ L+ IY + G L S+
Sbjct: 72  TVEASFMFLRDVLRSFMMRIETETPRSIHCFALKCGFLQDLATSSKLLTIYGRTGDLVSS 131

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
             +F E  +K+KD++VW+ +I     +G    AV LF EM+  G + +  T   A+ A S
Sbjct: 132 LGLFGE--LKEKDVIVWNSMITCLNQNGRYIAAVGLFVEMIHKGNEFDSTTLLLAVSALS 189


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 192/599 (32%), Positives = 322/599 (53%), Gaps = 4/599 (0%)

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
           R LF+ M  R+   +  ++  Y+QN    ++  ++  M R G   PD+ T+  ++    D
Sbjct: 97  RELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSG-VKPDHITFATLLSGFDD 155

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
               K  + +H  ++  GF     V N L+  Y     +  A ++F  M     VS+N +
Sbjct: 156 TTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVM 215

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243
           I+GY K  + +EAL +F  M     +P   +  ++L      +++  G+ IH L      
Sbjct: 216 ITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSY 275

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
             +I   NAL+D Y K   ++ A+ +FD M E D V++  +I GYA NG    +  LF+ 
Sbjct: 276 VWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKR 335

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           +Q       +    ++LS  +    L  GR  HA  +      EV V  AL+DMYAKC  
Sbjct: 336 LQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEK 395

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
            + + ++FA  + + +VPW AI++  V  G   +A+++F++M  E V  + AT  S L A
Sbjct: 396 FEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKA 455

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
            A LA +     +H  +IR G LS V   + L+D+Y+ CGS++ A ++F E+P  D++IV
Sbjct: 456 SANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMP--DRNIV 513

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ +I+ Y  +G  E   S F +M++SG+ P+ V+F S L ACSH GL+++ L  FN M
Sbjct: 514 CWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSM 573

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
            + ++   R  HY  ++D+L R+GR +EA +LI  MP +P   +W ++L +C IH N +L
Sbjct: 574 TQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDL 633

Query: 604 GEVAAKWLFELEP-ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            + AA  LF+++   +   YV +S +Y+   +W++A  V+  M E+G++K  A+S +E+
Sbjct: 634 AKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVEI 692



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/453 (26%), Positives = 220/453 (48%), Gaps = 4/453 (0%)

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N +++ Y+    +  AR++F++M+  + VSW  +I GY +N   KEA  ++  M +SGV+
Sbjct: 81  NMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVK 140

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PD  +  ++L        ++    IH  +       ++  +N+LVD Y K   ++ A  +
Sbjct: 141 PDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQL 200

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F  M  +D V++  MI GY   G    AL LF  M+    +P+  T  ++L        +
Sbjct: 201 FSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDV 260

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
             G+ +H   IK +   ++ V  AL+D Y+K + + L+  +F    +   V +N I+ G 
Sbjct: 261 IFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGY 320

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
             NG   K+ +LF+++     +  +    ++L   AI  +L      H   +    +S V
Sbjct: 321 AWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEV 380

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
           +V   L+D+Y+KC   E A++IF+ +  ++   V W+ II+ Y   G  E A+ +FKEM 
Sbjct: 381 QVGNALVDMYAKCEKFEDANRIFANLAYRNS--VPWTAIISIYVQKGFHEEALKMFKEMN 438

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           +  V  ++ TF S L A ++   +  G  L + ++      S     + +VD+    G +
Sbjct: 439 RENVHGDQATFASTLKASANLASVSLGKQLHSSVIR-LGLLSSVFSGSVLVDMYANCGSM 497

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
            +A ++ + MP +     W AL+ A   +G+ E
Sbjct: 498 KDAIEVFKEMPDRNI-VCWNALISAYSQNGDAE 529



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 191/425 (44%), Gaps = 29/425 (6%)

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           ++K+G +P+ +     L       +I   R + + +      +N ++ N +V  YVK  +
Sbjct: 37  IVKTGFDPEISRFNFKLKDLVRANQIAKARQLFDEMPY----RNTSSVNMMVSGYVKSRN 92

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           +  AR +F+ M  R+ V+WT MI GY+ N   + A  L+  M   GV+P+ +T  +LLS 
Sbjct: 93  LFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSG 152

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
                 LK    +H+  I+      +IV  +L+D Y K   + ++ Q+F+    K +V +
Sbjct: 153 FDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSF 212

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           N ++ G    G   +A++LF QM     +P+  T  ++L       D+     IH   I+
Sbjct: 213 NVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIK 272

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
             ++  + V+  L+D YSK   ++ A  +F E+P  + D V +++II GY  +G  E + 
Sbjct: 273 TSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMP--ELDGVSYNIIITGYAWNGQYEKSF 330

Query: 503 SLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI--- 559
            LFK +  +        F + L   +    L  G           QT ++A   T +   
Sbjct: 331 DLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMG----------RQTHAQAVVTTAVSEV 380

Query: 560 ------VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
                 VD+  +  + ++A  +   +  + +   W A++   V  G     E A K   E
Sbjct: 381 QVGNALVDMYAKCEKFEDANRIFANLAYRNS-VPWTAIISIYVQKG---FHEEALKMFKE 436

Query: 614 LEPEN 618
           +  EN
Sbjct: 437 MNREN 441



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/268 (29%), Positives = 134/268 (50%), Gaps = 1/268 (0%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           + ++   + LFDEM E     YN ++  YA NG    S  +F   L+   ++  N+ +  
Sbjct: 292 HDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLF-KRLQGTSFDRKNFPFAT 350

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           ++          +G   H + ++T    +  VGN L+ MY    + + A ++F  +   +
Sbjct: 351 MLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRN 410

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
            V W  +IS Y +  + +EAL +F  M +  V  D A+  S L A   L  + +G+ +H 
Sbjct: 411 SVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHS 470

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            V    L  ++ + + LVDMY  CGS+ +A  VF  M +R++V W ++I+ Y+ NGD   
Sbjct: 471 SVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEA 530

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACS 324
               F  M   G+ P+S++  S+L+ACS
Sbjct: 531 TFSSFADMIESGLYPDSVSFLSVLTACS 558


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 173/443 (39%), Positives = 267/443 (60%), Gaps = 3/443 (0%)

Query: 217 SVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER 276
           + + AC   + +  GR +H  +   R    +     LV MYV+CG++++AR V DRM ER
Sbjct: 15  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 74

Query: 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
            VV+WT+MI+GY+       AL LF  M   G  PN  T+ ++L++CS    + +G+ +H
Sbjct: 75  SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVH 134

Query: 337 AWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR 396
           +  +K N E  + V ++L+DMYAK   ++ + +VF    ++  V   AI++G    GL  
Sbjct: 135 SLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDE 194

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLI 456
           +A++LFRQ+  E ++ N  T  +L+ A + LA L     +H  ++R      V +   LI
Sbjct: 195 EALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLI 254

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
           D+YSKCG L  + ++F  +   ++ +V W+ ++ GYG HG G   +SLFK++    V+P+
Sbjct: 255 DMYSKCGKLLYSRRVFDNM--LERSVVSWNAMLMGYGRHGLGHEVISLFKDL-HKEVKPD 311

Query: 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
            VT  + L  CSHGGL+DEGLD+F+ +++         HY CI+DLLGR+GRL++A +LI
Sbjct: 312 SVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLI 371

Query: 577 RTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWK 636
             MP + T ++WG+LLGAC +H NV +GE+ A+ L E+EPEN GNYV+LS +Y+A   WK
Sbjct: 372 ENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWK 431

Query: 637 DAENVRDVMDEKGLRKAPAHSLI 659
           D   VR +M EK + K P  S I
Sbjct: 432 DVFKVRKLMLEKTVTKEPGQSWI 454



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/409 (31%), Positives = 213/409 (52%), Gaps = 22/409 (5%)

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
           + Y   I AC +      G  +H R++   +    F+G  L+ MY+  G +  AR V D 
Sbjct: 11  HEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDR 70

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M E SVVSW T+ISGY +     EAL +F  ML++G  P+  ++ +VL +C   + I  G
Sbjct: 71  MPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQG 130

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           + +H L+       ++   ++L+DMY K  ++ EAR VFD + ERDVV+ T++I+GYA  
Sbjct: 131 KQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQK 190

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G    AL LF+ +  EG++ N +T  +L++A S L  L  G+ +HA  +++ L   V ++
Sbjct: 191 GLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQ 250

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
            +LIDMY+KC  +  S +VF    ++  V WNA+L G   +GL  + + LF+ +  E V+
Sbjct: 251 NSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VK 309

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGL---------IDIYSKC 462
           P+  TL ++L   +    + + ++I        F +VV+  + L         ID+  + 
Sbjct: 310 PDSVTLLAVLSGCSHGGLVDEGLDI--------FDTVVKEQSALLHTGHYGCIIDLLGRS 361

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH---GETAVSLFKEM 508
           G LE A  +   +P +     +W  ++    +H +   GE       EM
Sbjct: 362 GRLEKALNLIENMPFESTP-SIWGSLLGACRVHANVHVGELVAQKLLEM 409



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 121/398 (30%), Positives = 204/398 (51%), Gaps = 28/398 (7%)

Query: 33  KQLHAFIITSG--P---LFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           +Q+HA +IT+   P   L T L +  VR  G + + R + D M ERS   + T++  Y+Q
Sbjct: 30  RQVHARMITARYRPAVFLGTRLVTMYVRC-GALDDARNVLDRMPERSVVSWTTMISGYSQ 88

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
                ++L +F+ MLR G   P+ YT   V+ +C+       G  +H  ++ T F+   F
Sbjct: 89  TERHVEALDLFIKMLRAGCI-PNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMF 147

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           VG+ L+ MY     ++ AR+VFD + E  VVS   +ISGY +    +EAL +F  +   G
Sbjct: 148 VGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEG 207

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           ++ +  +  +++ A   L  ++ G+ +H L+    L   +A  N+L+DMY KCG +  +R
Sbjct: 208 MQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSR 267

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VFD M ER VV+W +M+ GY  +G     + LF+ +  E V+P+S+T+ ++LS CS   
Sbjct: 268 RVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGG 326

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETA----LIDMYAKCNLVKLSFQVFARTSKKKTVP-W 382
            +  G  +    +K   E   ++ T     +ID+  +   ++ +  +      + T   W
Sbjct: 327 LVDEGLDIFDTVVK---EQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIW 383

Query: 383 NAILAGC-----VHNGLARKAVELFRQMLVEVVEPNDA 415
            ++L  C     VH G      EL  Q L+E +EP +A
Sbjct: 384 GSLLGACRVHANVHVG------ELVAQKLLE-MEPENA 414


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 204/630 (32%), Positives = 319/630 (50%), Gaps = 97/630 (15%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G ++H +++  G  +  ++ N L+  Y   G ++ A  VFD M   S  SWNTLISGY K
Sbjct: 29  GRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAK 88

Query: 190 -----------------------------NAYA--KEALVVFDWMLKSGVEPDCASVVSV 218
                                        N +     A+ +F  M+   V P   +V +V
Sbjct: 89  QGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNV 148

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLG-------------------------------KNI 247
           L +C   + +++GR IH  V    LG                               KNI
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
           + WNAL+ +Y++ G    A   F++M +RD+V+W SMI+GY+  G    AL +F  M  E
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNE 268

Query: 308 -GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC----- 361
             ++P++ T+ S+LSAC++L  L  G+ +HA+ ++   E    V  ALI MYAK      
Sbjct: 269 PSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEI 328

Query: 362 -----------NL-----------------VKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
                      NL                 VK + ++F +   +  V W A++ G V NG
Sbjct: 329 ARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNG 388

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
           L   A+ELFR M+ E  EPN  TL ++L   + L  L+    IH   I+ G  S   V+ 
Sbjct: 389 LWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTN 448

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            LI +Y+K G++  A ++F ++P   K+IV W+ +I     HG G+ A++LF+ M+  G+
Sbjct: 449 ALIAMYAKTGNINVAKRVF-DLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGM 507

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
           +P+ +T+   L AC+H GL+++G   +N M E H+      HY C++DL GRAG L EAY
Sbjct: 508 KPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAY 567

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633
             I +MP++P +  WG+LL +C IH N +L +VAA+ L  ++P N G Y+ L+ +YSA  
Sbjct: 568 LFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACG 627

Query: 634 RWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +W++A   R +M ++G+RK    S I ++N
Sbjct: 628 KWENAAQTRKLMKDRGVRKEKGISWIHIKN 657


>gi|15230248|ref|NP_189142.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273633|sp|Q9LJR6.1|PP253_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial; Flags: Precursor
 gi|9293988|dbj|BAB01891.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643452|gb|AEE76973.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 601

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 179/530 (33%), Positives = 305/530 (57%), Gaps = 4/530 (0%)

Query: 133 LHGRVLITGFDMD-TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
           +H  V+ TG  ++ + +   LIA     GE+  ARKVFD + +  V  +N++I  Y +  
Sbjct: 36  IHAFVISTGNLLNGSSISRDLIASCGRIGEISYARKVFDELPQRGVSVYNSMIVVYSRGK 95

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
              E L ++D M+   ++PD ++    + AC     +E G  +           ++   +
Sbjct: 96  NPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEKGEAVWCKAVDFGYKNDVFVCS 155

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           +++++Y+KCG ++EA ++F +M++RDV+ WT+M+ G+A  G    A+  ++ MQ EG   
Sbjct: 156 SVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQNEGFGR 215

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           + + +  LL A   L   K GRS+H +  +  L   V+VET+L+DMYAK   ++++ +VF
Sbjct: 216 DRVVMLGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLVDMYAKVGFIEVASRVF 275

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
           +R   K  V W ++++G   NGLA KA E   +M     +P+  TL  +L A + +  L+
Sbjct: 276 SRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLK 335

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               +HCY+++   L  V  +T L+D+YSKCG+L S+ +IF  +    KD+V W+ +I+ 
Sbjct: 336 TGRLVHCYILKRHVLDRV-TATALMDMYSKCGALSSSREIFEHVG--RKDLVCWNTMISC 392

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           YG+HG+G+  VSLF +M +S ++P+  TF S L A SH GL+++G   F+ M+  ++   
Sbjct: 393 YGIHGNGQEVVSLFLKMTESNIEPDHATFASLLSALSHSGLVEQGQHWFSVMINKYKIQP 452

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
              HY C++DLL RAGR++EA D+I +  L     +W ALL  C+ H N+ +G++AA  +
Sbjct: 453 SEKHYVCLIDLLARAGRVEEALDMINSEKLDNALPIWVALLSGCINHRNLSVGDIAANKI 512

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            +L P++ G   L+S  ++   +WK+   VR +M    + K P +S IEV
Sbjct: 513 LQLNPDSIGIQTLVSNFFATANKWKEVAKVRKLMRNGAMEKVPGYSAIEV 562



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 143/496 (28%), Positives = 256/496 (51%), Gaps = 21/496 (4%)

Query: 6   HHTL--PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVR-------A 56
           H TL  PK     IK +Q  +  K      Q+HAF+I++G L     SS+ R        
Sbjct: 11  HRTLLCPKR----IKFLQSISKLKR--HITQIHAFVISTGNLLNG--SSISRDLIASCGR 62

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
            G +S  R +FDE+ +R   +YN+++ +Y++     + L+++  M+   +  PD+ T+ +
Sbjct: 63  IGEISYARKVFDELPQRGVSVYNSMIVVYSRGKNPDEVLRLYDQMIA-EKIQPDSSTFTM 121

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
            IKAC      + G A+  + +  G+  D FV + ++ +YM  G++  A  +F  M +  
Sbjct: 122 TIKACLSGLVLEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRD 181

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V+ W T+++G+ +   + +A+  +  M   G   D   ++ +L A G L + +MGR +H 
Sbjct: 182 VICWTTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHG 241

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            +    L  N+    +LVDMY K G +  A  VF RM  +  V+W S+I+G+A NG    
Sbjct: 242 YLYRTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANK 301

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A      MQ  G +P+ +T+  +L ACS +  LK GR +H + +K+++  + +  TAL+D
Sbjct: 302 AFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHV-LDRVTATALMD 360

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY+KC  +  S ++F    +K  V WN +++    +G  ++ V LF +M    +EP+ AT
Sbjct: 361 MYSKCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESNIEPDHAT 420

Query: 417 LNSLLPAYAILADLQQAMNIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
             SLL A +    ++Q  +    +I +Y      +    LID+ ++ G +E A  + +  
Sbjct: 421 FASLLSALSHSGLVEQGQHWFSVMINKYKIQPSEKHYVCLIDLLARAGRVEEALDMINSE 480

Query: 476 PIKDKDIVVWSVIIAG 491
            + D  + +W  +++G
Sbjct: 481 KL-DNALPIWVALLSG 495


>gi|357495605|ref|XP_003618091.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519426|gb|AET01050.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 224/655 (34%), Positives = 351/655 (53%), Gaps = 23/655 (3%)

Query: 24  AATKSIAGTKQLHAFIITS------GPLFTHLRSSLVRAYGHVSNVRIL--FDEMSERSS 75
           A TK I   K +H+  + S      GP    + +SL+  Y    +   L  FD M  R+ 
Sbjct: 128 ALTKDILTGKAIHSHFLRSHSNTNTGPSRI-VYNSLLNMYASCQHEYALNVFDVMRRRNV 186

Query: 76  FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHG 135
             +NT++  + +      +++ F  M+      P   T+  +  A + L   +     +G
Sbjct: 187 VAWNTLILSFVKMNRYPQAVEAFANMIN-QSVMPSPVTFVNLFPALSKLGDSRTVKMFYG 245

Query: 136 --RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
             R     +  D FV +  I M+ + G +  AR VFD     +   WNT+I  Y +N   
Sbjct: 246 FMRKFGDQYVSDVFVVSSAILMFSDVGCMDYARMVFDRCLNKNTEIWNTMIVAYVQNNCP 305

Query: 194 KEALVVFDWMLKS--GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
            EA+ VF   L+S  GV  D  +++SVL A   L++I++    H  V     G  I   N
Sbjct: 306 VEAIDVFIQALESEEGVCDD-VTLLSVLTAVSQLQQIKLAEQFHAFVIKSLPGSLIIILN 364

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           A++ MY +C  V+ +  VFD+M ERD V+W ++I+ +  NG    AL L   MQ +    
Sbjct: 365 AVMVMYSRCNHVDTSLKVFDKMLERDAVSWNTIISAFVQNGFDEEALMLVCEMQKQKFLI 424

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +S+T  +LLSA S+L  L  G+  HA+ I++ ++ E + E+ LIDMYAK   ++ +  +F
Sbjct: 425 DSVTATALLSAASNLRNLYVGKQTHAYLIRRGIQFEGM-ESYLIDMYAKSGSIRTAELLF 483

Query: 372 AR--TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
            +  +S +    WNAI+AG   NGL  KA+ L +QMLV+ V PN  TL S+LPA + +  
Sbjct: 484 EQNCSSDRDQATWNAIIAGYTQNGLNEKAILLLKQMLVQNVIPNAVTLASILPACSSMGS 543

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           +  A  +H + IR      V V T L D YSKCG++  A  +F   P  +K+ V ++ ++
Sbjct: 544 MGLARQLHGFSIRRFLEKNVYVGTSLTDTYSKCGAISYAENVFLRTP--EKNSVTYTTMM 601

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
             YG HG G+ A++L+  M++SG++P+ VTF + L AC++ GL+DEGL +F  M + H+ 
Sbjct: 602 MCYGQHGMGKRALTLYDSMLRSGIRPDAVTFVAILSACNYSGLVDEGLQIFESMEKVHKI 661

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP-THAVWGALLGACVIHGNVELGEVAA 608
               +HY C+ D+LGR GR+ EAY+ ++ +     T  +WG+LLG+C  HG+ ELG+  A
Sbjct: 662 KPSIEHYCCVADMLGRVGRVVEAYEFVKGLGEDANTMEIWGSLLGSCRNHGHFELGKAVA 721

Query: 609 KWLFE--LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           K L    ++    G +VLLS +Y+    W+  + VR  M EKGL K    S +E+
Sbjct: 722 KKLLNMGMDKRMAGYHVLLSNIYAEEGEWEKVDRVRKQMKEKGLHKETGCSWVEI 776



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 113/450 (25%), Positives = 206/450 (45%), Gaps = 15/450 (3%)

Query: 160 GEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK--SGVEPDCASVVS 217
           G+   A  + D++   S V WN++I G+  N    +AL+++  M    S    D  +  S
Sbjct: 63  GQPHLALHLLDSLPRPSTVVWNSVIIGFICNNLPHQALLLYAKMRSNSSCSTFDPYTFSS 122

Query: 218 VLPACGYLKEIEMGRMIHELV----AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
            L AC   K+I  G+ IH       +    G +   +N+L++MY  C     A  VFD M
Sbjct: 123 TLKACALTKDILTGKAIHSHFLRSHSNTNTGPSRIVYNSLLNMYASCQH-EYALNVFDVM 181

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
             R+VV W ++I  +        A+  F  M  + V P+ +T  +L  A S L   +  +
Sbjct: 182 RRRNVVAWNTLILSFVKMNRYPQAVEAFANMINQSVMPSPVTFVNLFPALSKLGDSRTVK 241

Query: 334 SLHAWTIK--QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVH 391
             + +  K       +V V ++ I M++    +  +  VF R   K T  WN ++   V 
Sbjct: 242 MFYGFMRKFGDQYVSDVFVVSSAILMFSDVGCMDYARMVFDRCLNKNTEIWNTMIVAYVQ 301

Query: 392 NGLARKAVELFRQML-VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
           N    +A+++F Q L  E    +D TL S+L A + L  ++ A   H ++I+    S++ 
Sbjct: 302 NNCPVEAIDVFIQALESEEGVCDDVTLLSVLTAVSQLQQIKLAEQFHAFVIKSLPGSLII 361

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           +   ++ +YS+C  ++++ K+F +  + ++D V W+ II+ +  +G  E A+ L  EM +
Sbjct: 362 ILNAVMVMYSRCNHVDTSLKVFDK--MLERDAVSWNTIISAFVQNGFDEEALMLVCEMQK 419

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
                + VT T+ L A S+   L  G     +++         + Y  ++D+  ++G + 
Sbjct: 420 QKFLIDSVTATALLSAASNLRNLYVGKQTHAYLIRRGIQFEGMESY--LIDMYAKSGSIR 477

Query: 571 EAYDLI-RTMPLKPTHAVWGALLGACVIHG 599
            A  L  +        A W A++     +G
Sbjct: 478 TAELLFEQNCSSDRDQATWNAIIAGYTQNG 507


>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
          Length = 1111

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 214/676 (31%), Positives = 355/676 (52%), Gaps = 35/676 (5%)

Query: 15   LVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDE----- 69
            LV ++ +      +I G +++   +  +G + T + + L+RAY     + ++  E     
Sbjct: 440  LVREVYKNLEEQGNIEGAEKVLVILRKAGHVSTEIYNWLLRAYAKAGKMPLIVAEWMKKD 499

Query: 70   ---MSERSSFLYNTVMKMYA---------------------QNGASHDSLKMFLGMLRLG 105
               M E +  L     KM                        NG S   L+    M R+G
Sbjct: 500  KVEMDEETHRLIKETSKMCXVQRLDPLLCICIRNVEFWRRHMNGESKMGLECLCEMHRIG 559

Query: 106  E--YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163
                 P+  T     +AC +L     G  LHG V+ TG D    V + L++MY   G  +
Sbjct: 560  GDGERPNFRTLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSSLLSMYSKCGNPE 619

Query: 164  AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
             A + F  +    ++SW ++IS Y +  +A E + +F  ML SG+ PD   +  +L +  
Sbjct: 620  EAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFS 679

Query: 224  YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
                +   +  H L+       +    NAL+ MY K G +  A   F R++E++   W  
Sbjct: 680  NSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNL 739

Query: 284  MINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN 343
            M++GY   G +   +GLF+ MQ  G+  +S ++ S++S+CS L      RS+H + IK  
Sbjct: 740  MVSGYGKIGLIMKCIGLFREMQCLGIESDSNSLVSVVSSCSQLGATHLARSIHCYMIKNL 799

Query: 344  LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
            ++  V V  +LIDMY K   + ++ ++F R   +  V WN +++   H G   +A+ L+ 
Sbjct: 800  MDENVSVNNSLIDMYGKSGNLTIARRIFCRIP-RDIVTWNTLISSYAHCGHFAEALSLYD 858

Query: 404  QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
            +M++E ++PN ATL  +L A + LA L++   +H Y+    F   + ++T LID+Y+KCG
Sbjct: 859  KMVLEDLKPNSATLVXVLSACSHLASLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCG 918

Query: 464  SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
             LE + +IF+   + ++D++ W+V+I+GYGMHG   +A+  F++M +S  +PN +TF + 
Sbjct: 919  QLEKSREIFN--SMHERDVITWNVMISGYGMHGDARSAIEXFQQMEESSAKPNGLTFLAV 976

Query: 524  LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
            L AC+H GL+ EG  LF  M +++       HY C+VDLLGR+G L EA  L+ +MP+ P
Sbjct: 977  LSACAHAGLVKEGKYLFGKM-QDYSVAPNLKHYACMVDLLGRSGNLQEAEALVLSMPISP 1035

Query: 584  THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643
               VWGALL +C IH  +E+G   AK     + EN G YV++S +YS++ +W++AE  R 
Sbjct: 1036 DGGVWGALLSSCKIHNEIEMGIRIAKHAIXSDVENDGYYVMISNMYSSIGKWEEAEKARG 1095

Query: 644  VMDEKGLRKAPAHSLI 659
            +M E+G+RK    S +
Sbjct: 1096 IMKERGVRKKTGWSAV 1111



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 50/279 (17%), Positives = 121/279 (43%), Gaps = 46/279 (16%)

Query: 252 ALVDMYVKCGSVNEARLVFDRMSE----RDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
           AL+  YV+     +A  + ++MSE    +  + +  MI+ Y  +G +    G+ Q ++ +
Sbjct: 162 ALLHTYVQNKVSEKAEALMEKMSECGFLKCPLPYNHMISLYISDGQLEKVPGMIQELK-K 220

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
              P+ +T    L+ C+S   ++    +     K  ++ + +  ++L ++Y K  L+  +
Sbjct: 221 NTSPDVVTYNLWLTVCASQNDVETAEKVLLEIKKAKIDPDWVTYSSLTNLYIKKGLLDKA 280

Query: 368 F----QVFARTSKKKTVPWNAILAGCVHNGLARK--AVELFRQMLVEVVEPNDATLNSLL 421
                ++  RTS+K  + ++++++  +H  +  K     +++++     + NDA    ++
Sbjct: 281 ATTLNEMEKRTSRKGRIAYSSLIS--LHTNMQDKDGVHRIWKKLKSIFHKMNDAEYTCMI 338

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            +   L + ++A N+                      YS+  S+          P  D  
Sbjct: 339 SSLVKLGEFEEAENL----------------------YSEWTSVS---------PTGDSR 367

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           +   ++++A Y      E A   + +MV+ G+ P+  T+
Sbjct: 368 VP--NILLAAYINKNEMEMAEKFYNQMVERGITPSYTTW 404


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 331/615 (53%), Gaps = 52/615 (8%)

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           F ++ E +   +  +M   A +   +++ ++F  MLR    + D+ +   V+  C+    
Sbjct: 195 FGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLR-NRIHVDSVSLSSVLGVCSRGGC 253

Query: 127 RKLGI---------ALHGR-----VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
            + G+          +HG+      +  GF+ D  + N L+ MY   G + +A  +F  M
Sbjct: 254 GEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNM 313

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
            E SVVSWN +I+GY + + + +A+     M   G EPD  + V++L AC          
Sbjct: 314 PEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVAC---------- 363

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
                                    +K G +   R +FD MS   + +W ++++GY+ N 
Sbjct: 364 -------------------------IKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNE 398

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
           + + A+ LF+ MQF  V P+  T+  +LS+ + +  L+ GR +HA + K     ++ + +
Sbjct: 399 NHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLAS 458

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
            LI MY+KC  V+++ ++F R ++   V WN+++AG   N L ++A   F++M  + + P
Sbjct: 459 GLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFP 518

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           +  +  ++L   A L+ L Q   +H  + R G+++   V + LID+YSKCG +++A  +F
Sbjct: 519 SQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVF 578

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
               +  K+ V W+ +I GY  +G G+ AV L+++M+ SG +P+ +TF + L ACSH GL
Sbjct: 579 D--MMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGL 636

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           +D G+ +FN M + H      DHYTCI+D LGRAGRL EA  LI  MP K    +W  LL
Sbjct: 637 VDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLL 696

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
            +C ++ +V L   AA+ LF L+P+N   YVLL+ +YS++ RW DA+ VR++M    + K
Sbjct: 697 SSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVK 756

Query: 653 APAHSLIEVRNILTA 667
            P +S IE +N + A
Sbjct: 757 DPGYSWIEHKNGMQA 771



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 162/619 (26%), Positives = 280/619 (45%), Gaps = 77/619 (12%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVS---NVRI 65
           L   T L  +L++ YA   +I  +++L    +    ++T   ++++ AY   S   +  +
Sbjct: 36  LSDDTFLSNRLIEFYAKCNAIDASRRLFD-QMPKRDIYTW--NAILGAYCKASELEDAHV 92

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LF EM ER+   +NT++    +NG    +L ++  M R G + P ++T   V+ AC  L 
Sbjct: 93  LFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREG-FVPTHFTLASVLSACGALV 151

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             + G   HG  +  G D + +VGN L+ MY     +  A + F  + E + VS+  ++ 
Sbjct: 152 DVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMG 211

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC--GYLKEIEM------------G 231
           G   +    EA  +F  ML++ +  D  S+ SVL  C  G   E  +            G
Sbjct: 212 GLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHG 271

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           + +H L        ++   N+L+DMY K G+++ A ++F  M E  VV+W  MI GY   
Sbjct: 272 QQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQK 331

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
                A+   Q MQ+ G  P+ +T  ++L AC     ++ GR                  
Sbjct: 332 SQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGR------------------ 373

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
                            Q+F   S      WN IL+G   N   ++AV+LFR+M    V 
Sbjct: 374 -----------------QMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVH 416

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           P+  TL  +L + A +  L+    +H    +  F + + +++GLI +YSKCG +E A +I
Sbjct: 417 PDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRI 476

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F  I   + DIV W+ ++AG  ++   + A + FK+M + G+ P++ ++ + L  C+   
Sbjct: 477 FDRIA--ELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLS 534

Query: 532 LLDEGLDLFNFMLENHQTCSRADHY------TCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
            L +G  +       H   +R  +       + ++D+  + G +D A  +   M  K T 
Sbjct: 535 SLSQGRQV-------HSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNT- 586

Query: 586 AVWGALLGACVIHGNVELG 604
             W  +     IHG  + G
Sbjct: 587 VTWNEM-----IHGYAQNG 600



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 193/392 (49%), Gaps = 28/392 (7%)

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
           ++I  WNA++  Y K   + +A ++F  M ER++V+W ++I+    NG  + ALG++  M
Sbjct: 69  RDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRM 128

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
             EG  P   T+ S+LSAC +L  ++ GR  H  +IK  L+  + V  AL+ MYAKC  +
Sbjct: 129 SREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCI 188

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL--- 421
             + Q F    +   V + A++ G   +    +A  LFR ML   +  +  +L+S+L   
Sbjct: 189 GDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVC 248

Query: 422 -----------PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
                       +  +L+       +HC  I++GF S + ++  L+D+Y+K G+++SA  
Sbjct: 249 SRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEM 308

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           IF  +P  +  +V W+V+IAGYG       A+   + M   G +P+E+T+ + L AC   
Sbjct: 309 IFVNMP--EVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKS 366

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA---- 586
           G ++ G  +F+ M     +      +  I+    +     EA  L R M  +  H     
Sbjct: 367 GDIEAGRQMFDGM-----SSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTT 421

Query: 587 ---VWGALLGACVIHGNVELGEVAAKWLFELE 615
              +  +L G  ++ G  ++  V+ K +F  +
Sbjct: 422 LAIILSSLAGMMLLEGGRQVHAVSQKAVFRTD 453



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/465 (26%), Positives = 203/465 (43%), Gaps = 82/465 (17%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM---- 172
           +++ C D      G  +H  +L +    DTF+ N LI  Y     + A+R++FD M    
Sbjct: 11  LLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRD 70

Query: 173 ---W------------------------EHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
              W                        E ++VSWNTLIS   +N + ++AL V+  M +
Sbjct: 71  IYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSR 130

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
            G  P   ++ SVL ACG L ++E GR  H +     L  NI   NAL+ MY KC  + +
Sbjct: 131 EGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGD 190

Query: 266 ARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
           A   F  + E + V++T+M+ G A +  V  A  LF+LM    +  +S+++ S+L  CS 
Sbjct: 191 AIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSR 250

Query: 326 --------------LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
                         L     G+ +H  TIK   E ++ +  +L+DMYAK   +  +  +F
Sbjct: 251 GGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIF 310

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
               +   V WN ++AG      + KA+E  ++M     EP++ T  ++L A        
Sbjct: 311 VNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVA-------- 362

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
                 C                      K G +E+  ++F    +    +  W+ I++G
Sbjct: 363 ------CI---------------------KSGDIEAGRQMFD--GMSSPSLSSWNTILSG 393

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           Y  + + + AV LF+EM    V P+  T    L + +   LL+ G
Sbjct: 394 YSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGG 438



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 176/349 (50%), Gaps = 8/349 (2%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +   R +FD MS  S   +NT++  Y+QN    +++K+F  M +    +PD  T  I+
Sbjct: 367 GDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREM-QFRSVHPDRTTLAII 425

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + +   +   + G  +H       F  D ++ + LI MY   G+V+ A+++FD + E  +
Sbjct: 426 LSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDI 485

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V WN++++G   N+  KEA   F  M + G+ P   S  +VL  C  L  +  GR +H  
Sbjct: 486 VCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQ 545

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +A      +    +AL+DMY KCG V+ AR VFD M  ++ VTW  MI+GYA NG    A
Sbjct: 546 IAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEA 605

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE--TALI 355
           + L++ M   G +P+ +T  ++L+ACS    +  G  +   +++Q    E +V+  T +I
Sbjct: 606 VLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFN-SMQQEHGVEPLVDHYTCII 664

Query: 356 DMYAKCN-LVKLSFQVFARTSKKKTVPWNAILAGC---VHNGLARKAVE 400
           D   +   L +    +     K   + W  +L+ C       LAR+A E
Sbjct: 665 DSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAE 713



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/309 (23%), Positives = 129/309 (41%), Gaps = 46/309 (14%)

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
           + SLL  C        G+ +HA  ++  L  +  +   LI+ YAKCN +  S ++F +  
Sbjct: 8   LASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMP 67

Query: 376 KKKTVPWNAIL-------------------------------AGCVHNGLARKAVELFRQ 404
           K+    WNAIL                               +    NG  +KA+ ++ +
Sbjct: 68  KRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYR 127

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           M  E   P   TL S+L A   L D++     H   I+ G  + + V   L+ +Y+KC  
Sbjct: 128 MSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRC 187

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           +  A + F ++P  + + V ++ ++ G         A  LF+ M+++ +  + V+ +S L
Sbjct: 188 IGDAIQAFGDVP--EPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVL 245

Query: 525 HACSHGGLLDEGL----DLFNFMLENHQT-CSRADH--------YTCIVDLLGRAGRLDE 571
             CS GG  + GL    D+ +  +   Q  C    H           ++D+  + G +D 
Sbjct: 246 GVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDS 305

Query: 572 AYDLIRTMP 580
           A  +   MP
Sbjct: 306 AEMIFVNMP 314



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 9/169 (5%)

Query: 24  AATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAY---GHVSNVRILFDEMSERSSFLYN 79
           A   S++  +Q+H+ I   G +    + S+L+  Y   G V   R +FD M  +++  +N
Sbjct: 531 AKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWN 590

Query: 80  TVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLI 139
            ++  YAQNG   +++ ++  M+  GE  PD  T+  V+ AC+       GI +    + 
Sbjct: 591 EMIHGYAQNGCGDEAVLLYEDMIGSGE-KPDGITFVAVLTACSHSGLVDTGIKIFNS-MQ 648

Query: 140 TGFDMDTFVGN--CLIAMYMNFGEVKAARKVFDAM-WEHSVVSWNTLIS 185
               ++  V +  C+I      G +  A  + D M  ++  + W  L+S
Sbjct: 649 QEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLS 697


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 180/469 (38%), Positives = 275/469 (58%), Gaps = 4/469 (0%)

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALV 254
            L   D + +  + PD      +L  C  L ++E GR++H  LV    L  ++   N +V
Sbjct: 71  GLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIV 130

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           +MY KCG +++AR +FD M  +D+VTWT++I G++ N   R+AL LF  M   G++PN  
Sbjct: 131 NMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHF 190

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T+ SLL A  S + L  G  LHA+ +K   +  V V +AL+DMYA+C  +  +   F   
Sbjct: 191 TLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGM 250

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
             K  V WNA+++G    G    A+ L  +M  +  +P   T +S+  A A +  L+Q  
Sbjct: 251 PTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGK 310

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            +H ++I+ G   +  +   L+D+Y+K GS++ A ++F  + +K  D+V W+ ++ G   
Sbjct: 311 WVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VK-PDVVSWNTMLTGCAQ 368

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           HG G+  +  F++M++ G++PNE++F   L ACSH GLLDEGL  F  M + ++      
Sbjct: 369 HGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELM-KKYKVEPDVP 427

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HY   VDLLGR G LD A   IR MP++PT AVWGALLGAC +H N+ELG  AA+  FEL
Sbjct: 428 HYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFEL 487

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +P + G  +LLS +Y++  RW+D   VR +M E G++K PA S +E+ N
Sbjct: 488 DPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIEN 536



 Score =  214 bits (544), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 122/405 (30%), Positives = 212/405 (52%), Gaps = 2/405 (0%)

Query: 99  LGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYM 157
           L +++ G   PD   Y  ++K CT L   + G  +H  ++ + F D    + N ++ MY 
Sbjct: 75  LDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYA 134

Query: 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVS 217
             G +  AR++FD M    +V+W  LI+G+ +N   ++AL++F  ML+ G++P+  ++ S
Sbjct: 135 KCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSS 194

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           +L A G    ++ G  +H          ++   +ALVDMY +CG ++ A+L FD M  + 
Sbjct: 195 LLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKS 254

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
            V+W ++I+G+A  G+  +AL L   MQ +  +P   T  S+ SAC+S+  L++G+ +HA
Sbjct: 255 EVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHA 314

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
             IK  L+    +   L+DMYAK   +  + +VF R  K   V WN +L GC  +GL ++
Sbjct: 315 HMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKE 374

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
            ++ F QML   +EPN+ +   +L A +    L + +     + +Y     V      +D
Sbjct: 375 TLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVD 434

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
           +  + G L+ A +   E+PI +    VW  ++    MH + E  V
Sbjct: 435 LLGRVGLLDRAERFIREMPI-EPTAAVWGALLGACRMHKNMELGV 478



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 185/382 (48%), Gaps = 7/382 (1%)

Query: 14  HLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHL--RSSLVRAY---GHVSNVRILFD 68
           +L  KL+++      +   + +HA ++ S  L  HL  ++ +V  Y   G + + R +FD
Sbjct: 88  NLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFD 147

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
           EM  +    +  ++  ++QN    D+L +F  MLRLG   P+++T   ++KA        
Sbjct: 148 EMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLG-LQPNHFTLSSLLKASGSEHGLD 206

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
            G  LH   L  G+    +VG+ L+ MY   G + AA+  FD M   S VSWN LISG+ 
Sbjct: 207 PGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHA 266

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           +    + AL +   M +   +P   +  SV  AC  +  +E G+ +H  +    L     
Sbjct: 267 RKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAF 326

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             N L+DMY K GS+++A+ VFDR+ + DVV+W +M+ G A +G  +  L  F+ M   G
Sbjct: 327 IGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIG 386

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           + PN ++   +L+ACS    L  G        K  +E +V      +D+  +  L+  + 
Sbjct: 387 IEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAE 446

Query: 369 QVFARTSKKKTVP-WNAILAGC 389
           +       + T   W A+L  C
Sbjct: 447 RFIREMPIEPTAAVWGALLGAC 468



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 160/310 (51%), Gaps = 5/310 (1%)

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN-LECEVI 349
             D    L    L+Q   + P+      LL  C+ L  +++GR +HA  +  + L+  ++
Sbjct: 65  QSDGGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLV 124

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           ++  +++MYAKC  +  + ++F     K  V W A++AG   N   R A+ LF QML   
Sbjct: 125 LQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLG 184

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           ++PN  TL+SLL A      L     +H + ++YG+ S V V + L+D+Y++CG +++A 
Sbjct: 185 LQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQ 244

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
             F  +P K +  V W+ +I+G+   G GE A+ L  +M +   QP   T++S   AC+ 
Sbjct: 245 LAFDGMPTKSE--VSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACAS 302

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
            G L++G  +   M+++          T ++D+  +AG +D+A  +   + +KP    W 
Sbjct: 303 IGALEQGKWVHAHMIKSGLKLIAFIGNT-LLDMYAKAGSIDDAKRVFDRL-VKPDVVSWN 360

Query: 590 ALLGACVIHG 599
            +L  C  HG
Sbjct: 361 TMLTGCAQHG 370


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 191/567 (33%), Positives = 305/567 (53%), Gaps = 36/567 (6%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAM--YMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           +  ++++TG   D F  + LIA      + ++     +       +  SWN  I G+  +
Sbjct: 25  IQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDS 84

Query: 191 AYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
              +EA+V++  +L+  G +PD  +   +  AC  L  I MG  I   V       +I  
Sbjct: 85  ENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFV 144

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
            NA++ + V CG ++ AR +FD+   RD+V+W SMINGY   G    AL  ++ M+ EG+
Sbjct: 145 SNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGI 204

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN------- 362
           +P+ +T+  ++S+C+ L  L  GR  H +  +  L+  V +  AL+DMY KC        
Sbjct: 205 KPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARK 264

Query: 363 ------------------------LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
                                   L+ +++++F     K  VPWNA++ G VH    ++A
Sbjct: 265 LFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEA 324

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
           + LF +M    + P++ T+ S L A + L  L   + IH Y+ ++     V + T LID+
Sbjct: 325 LALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDM 384

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           Y+KCG +  A ++F E+P   ++ + W+ II+G  +HG+   A++ F EM+ + V P+EV
Sbjct: 385 YAKCGKITKAIQVFQELP--GRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEV 442

Query: 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578
           TF   L AC HGGL++EG   F+ M        +  HY+C+VDLLGRAG L+EA +LI++
Sbjct: 443 TFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKS 502

Query: 579 MPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDA 638
           MP++    VWGAL  AC IHGNV +GE AA  L +++P + G YVLL+ +Y     WK+A
Sbjct: 503 MPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEA 562

Query: 639 ENVRDVMDEKGLRKAPAHSLIEVRNIL 665
              R +M ++G+ K P  S IEV  I+
Sbjct: 563 GKARKLMRQRGVEKTPGCSSIEVNGIV 589



 Score =  256 bits (653), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 160/539 (29%), Positives = 277/539 (51%), Gaps = 44/539 (8%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVR------- 64
           +  L+   +      KSI+  KQ+ + ++ +G +     SS + A+  +S  R       
Sbjct: 2   SLQLINPFLSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTN 61

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           ILF+  +  ++F +N  ++ +  +    +++ ++  +L+     PDNYTYP++ KAC  L
Sbjct: 62  ILFNTRNP-NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARL 120

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
           +  ++G  + G VL  GFD D FV N +I + ++ G++  ARK+FD      +VSWN++I
Sbjct: 121 SLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMI 180

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           +GY +  +A EAL  +  M   G++PD  +++ V+ +C  L+++++GR  H  +    L 
Sbjct: 181 NGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLK 240

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG------------ 292
             +   NAL+DMY+KCG++  AR +FD M+ + +V+WT+M+ GYA +G            
Sbjct: 241 LTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEM 300

Query: 293 ---DV----------------RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
              DV                + AL LF  MQ   + P+ +T+ S LSACS L  L  G 
Sbjct: 301 PDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGI 360

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            +H +  K  L   V + TALIDMYAKC  +  + QVF     + ++ W AI++G   +G
Sbjct: 361 WIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHG 420

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL-IRYGFLSVVEVS 452
            A  A+  F +M+   V P++ T   LL A      +++       +  ++     ++  
Sbjct: 421 NAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHY 480

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH---GETAVSLFKEM 508
           + ++D+  + G LE A ++   +PI + D VVW  +     +HG+   GE A S   +M
Sbjct: 481 SCMVDLLGRAGLLEEAEELIKSMPI-EADAVVWGALFFACRIHGNVLMGERAASKLLQM 538


>gi|296084817|emb|CBI27699.3| unnamed protein product [Vitis vinifera]
          Length = 807

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 212/707 (29%), Positives = 370/707 (52%), Gaps = 55/707 (7%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRS--SLVRAYGHV----SNVR 64
           K   + I +V    A       K +H+++I SG L +H  +  +L+  Y       S+  
Sbjct: 78  KPNSVTIAIVLPVCARLREDAGKSVHSYVIKSG-LESHTLAGNALISMYAKCGLVCSDAY 136

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
             F+ +  +    +N V+  +++N  + ++ K+F  ML+ G   P+  T   ++  C  L
Sbjct: 137 AAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLK-GPIQPNYATIASILPVCASL 195

Query: 125 ---AWRKLGIALHGRVL-ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
              A  + G  +H  VL       D  V N L++ Y+  G+++ A  +F  M    +VSW
Sbjct: 196 EENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSW 255

Query: 181 NTLISGYFKNAYAKEALVVF-DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELV 238
           N +I+GY  N    +AL +F +++    ++PD  ++VSVLPAC ++  +++ + IH  ++
Sbjct: 256 NAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYII 315

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               L ++ +  NAL+  Y KC     A   F  +S +D+++W ++++ +  +G   + +
Sbjct: 316 RHPGLREDTSVGNALLSFYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLV 375

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL---ECEVIVETALI 355
            L   M  EG+RP+S+TI +++   +++  +K+ +  H+++I+  L   +    +   ++
Sbjct: 376 NLLHWMLREGIRPDSITILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTLGNGML 435

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTV--------------------------------PWN 383
           D YAKC  +K +  +F   S+K+ V                                 WN
Sbjct: 436 DAYAKCGNMKYAVNIFGSLSEKRNVVTCNSMISGYVNSSSHDDAYAIFNTMSETDLTTWN 495

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
            ++     N    +A+ LF ++  + ++P+  T+ S+LPA A +A +      H Y+IR 
Sbjct: 496 LMVRVYAENDFPDQALSLFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIRA 555

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
            F + V ++   ID+YSKCGS+  A+K+F   P   KD+V+++ ++ G+ MHG GE A+ 
Sbjct: 556 CF-NDVRLNGAFIDMYSKCGSVFGAYKLFLSSP--QKDLVMFTAMVGGFAMHGMGEEALR 612

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563
           +F  M++ GV+P+ V  T+ L ACSH GL+DEG  +FN + + H      + Y C+VDLL
Sbjct: 613 IFSYMLELGVKPDHVIITAVLFACSHAGLVDEGWKIFNSIEKVHGFQPTMEQYACVVDLL 672

Query: 564 GRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623
            R GR+ +AY  +  MP++    +WG LLGAC  H  VELG V A  LF++E +N GNYV
Sbjct: 673 ARGGRIKDAYTFVTRMPIEANANIWGTLLGACRTHHEVELGRVVADHLFKIESDNIGNYV 732

Query: 624 LLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV---RNILTA 667
           ++S LY+A  RW     +R +M  + L+K    S IEV   +N+  A
Sbjct: 733 VMSNLYAADARWDGVMEIRRLMRTRELKKPAGCSWIEVGRRKNVFIA 779



 Score =  259 bits (661), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 171/610 (28%), Positives = 310/610 (50%), Gaps = 54/610 (8%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDS--LKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
           LF EM +R   ++N V+   A    SH++  +++F  M  + E  P++ T  IV+  C  
Sbjct: 35  LFGEMDQRDPVIWNIVLSGLA-GFQSHEAEVMRLFRAMHMVNEAKPNSVTIAIVLPVCAR 93

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEV-KAARKVFDAMWEHSVVSWNT 182
           L     G ++H  V+ +G +  T  GN LI+MY   G V   A   F+ +    VVSWN 
Sbjct: 94  LR-EDAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYAAFNRIEFKDVVSWNA 152

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE---IEMGRMIH-ELV 238
           +I+G+ +N + +EA  +F  MLK  ++P+ A++ S+LP C  L+E      G+ +H  ++
Sbjct: 153 VIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEENAGYRYGKEVHCHVL 212

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               L ++++  N+L+  Y++ G + +A  +F  M  RD+V+W ++I GYA NG+   AL
Sbjct: 213 RRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNAIIAGYASNGEWLKAL 272

Query: 299 GLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ-NLECEVIVETALID 356
            LF + +  E ++P+S+T+ S+L AC+ ++ L+  + +H + I+   L  +  V  AL+ 
Sbjct: 273 ELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRHPGLREDTSVGNALLS 332

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
            YAKCN  + + Q F   S+K  + WNAIL     +G     V L   ML E + P+  T
Sbjct: 333 FYAKCNYTQAALQTFLMISRKDLISWNAILDAFTESGCETHLVNLLHWMLREGIRPDSIT 392

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFL---SVVEVSTGLIDIYSKCGSLESAHKIFS 473
           + +++  YA ++ +++    H Y IR+G L   +   +  G++D Y+KCG+++ A  IF 
Sbjct: 393 ILTIIQYYAAVSRVKKVKETHSYSIRFGLLQGDAGPTLGNGMLDAYAKCGNMKYAVNIFG 452

Query: 474 EIPIK------------------------------DKDIVVWSVIIAGYGMHGHGETAVS 503
            +  K                              + D+  W++++  Y  +   + A+S
Sbjct: 453 SLSEKRNVVTCNSMISGYVNSSSHDDAYAIFNTMSETDLTTWNLMVRVYAENDFPDQALS 512

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563
           LF E+   G++P+ VT  S L AC+H   +        +++       R +     +D+ 
Sbjct: 513 LFHELQGQGMKPDIVTIMSILPACAHMASVHMLRQCHGYVIRACFNDVRLN--GAFIDMY 570

Query: 564 GRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK---WLFELEPENPG 620
            + G +  AY L  + P K    ++ A++G   +HG   +GE A +   ++ EL  + P 
Sbjct: 571 SKCGSVFGAYKLFLSSPQKDL-VMFTAMVGGFAMHG---MGEEALRIFSYMLELGVK-PD 625

Query: 621 NYVLLSKLYS 630
           + ++ + L++
Sbjct: 626 HVIITAVLFA 635



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 202/383 (52%), Gaps = 12/383 (3%)

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK-NAYAKEALVVFDWM-LKSGVE 209
           L+ +Y   G +    K+F  M +   V WN ++SG     ++  E + +F  M + +  +
Sbjct: 19  LLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEAK 78

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV-NEARL 268
           P+  ++  VLP C  L+E + G+ +H  V    L  +  A NAL+ MY KCG V ++A  
Sbjct: 79  PNSVTIAIVLPVCARLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAYA 137

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
            F+R+  +DVV+W ++I G++ N     A  LF  M    ++PN  TI S+L  C+SL  
Sbjct: 138 AFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLEE 197

Query: 329 ---LKRGRSLHAWTIKQ-NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
               + G+ +H   +++  L  +V V  +L+  Y +   ++ +  +F     +  V WNA
Sbjct: 198 NAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRNMKSRDLVSWNA 257

Query: 385 ILAGCVHNGLARKAVELFRQML-VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           I+AG   NG   KA+ELF + + +E ++P+  TL S+LPA A + +LQ A  IH Y+IR+
Sbjct: 258 IIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAHVHNLQVAKGIHGYIIRH 317

Query: 444 -GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
            G      V   L+  Y+KC   ++A + F  + I  KD++ W+ I+  +   G     V
Sbjct: 318 PGLREDTSVGNALLSFYAKCNYTQAALQTF--LMISRKDLISWNAILDAFTESGCETHLV 375

Query: 503 SLFKEMVQSGVQPNEVTFTSALH 525
           +L   M++ G++P+ +T  + + 
Sbjct: 376 NLLHWMLREGIRPDSITILTIIQ 398



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/286 (34%), Positives = 151/286 (52%), Gaps = 11/286 (3%)

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA-LNGDVRNALGLFQLMQF-EGV 309
            L+++Y K G+++    +F  M +RD V W  +++G A         + LF+ M      
Sbjct: 18  GLLNLYAKSGALDYCNKLFGEMDQRDPVIWNIVLSGLAGFQSHEAEVMRLFRAMHMVNEA 77

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV-KLSF 368
           +PNS+TI  +L  C+ L     G+S+H++ IK  LE   +   ALI MYAKC LV   ++
Sbjct: 78  KPNSVTIAIVLPVCARLRE-DAGKSVHSYVIKSGLESHTLAGNALISMYAKCGLVCSDAY 136

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL- 427
             F R   K  V WNA++AG   N    +A +LF  ML   ++PN AT+ S+LP  A L 
Sbjct: 137 AAFNRIEFKDVVSWNAVIAGFSENKFTEEAFKLFHAMLKGPIQPNYATIASILPVCASLE 196

Query: 428 --ADLQQAMNIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
             A  +    +HC+++ R   +  V V   L+  Y + G +E A  +F    +K +D+V 
Sbjct: 197 ENAGYRYGKEVHCHVLRRMELVEDVSVINSLMSFYLRIGQMEKAEFLFRN--MKSRDLVS 254

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQ-SGVQPNEVTFTSALHACSH 529
           W+ IIAGY  +G    A+ LF E +    ++P+ VT  S L AC+H
Sbjct: 255 WNAIIAGYASNGEWLKALELFSEFISLETIKPDSVTLVSVLPACAH 300


>gi|302782183|ref|XP_002972865.1| hypothetical protein SELMODRAFT_51647 [Selaginella moellendorffii]
 gi|300159466|gb|EFJ26086.1| hypothetical protein SELMODRAFT_51647 [Selaginella moellendorffii]
          Length = 597

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 194/590 (32%), Positives = 316/590 (53%), Gaps = 17/590 (2%)

Query: 47  THLRSSLVRAYGHVSNVR---ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR 103
           T++ + +V+ YG   +V    I+F  +  R+ F +N ++  +AQNG    S+ +F  M+R
Sbjct: 14  TYVSNMIVQMYGKCGSVDDAWIVFSSIQARNVFSWNMIIAAFAQNGHPERSVALFWRMIR 73

Query: 104 LGE-YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEV 162
                 P   T+   ++   +LA    G  +H   +  G + D  VG  ++ MY     +
Sbjct: 74  EEPGIIPTRITFLHALEKLKNLA---EGRKIHELAITVGLESDPAVGTAIVTMYGKSRSL 130

Query: 163 KAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC 222
             A++VFD +    VV+W  LI+ Y +N + +EAL ++  M   GV P+  +   V+ AC
Sbjct: 131 ADAKRVFDQLKRRDVVAWTALITAYTQNGHCEEALDLYSSMDPDGVAPNQYTFTIVIDAC 190

Query: 223 GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
             L  +++G  IH  +    L   I   N+L+++Y  C  + +A  +F RM  R  V+W 
Sbjct: 191 AELGRLDVGIAIHARITAAGLESWIEVANSLINLYGNCKRLRDAERIFQRMPRRSSVSWN 250

Query: 283 SMINGYALNGDVRNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
           SMI  YA NG   +A+ L++ M+ +G V+ + +T  ++L AC S   L  GRS+H   I 
Sbjct: 251 SMIAAYAHNGHPGDAIDLYKRMRGDGSVKLDPVTFVNVLGACYSQEDLAAGRSIHRDAIA 310

Query: 342 QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVEL 401
           + L   +++ +A + MY +C  V+ S   F R   K  V W+A++A    NG +  A+  
Sbjct: 311 RGLGSHLVLASAAVSMYGRCGSVEESMATFERMEIKDGVAWSAVIAALAQNGESSSALHF 370

Query: 402 FRQML-VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
           +R+M+      PN+AT  S+L A +  AD  + + IH +++  G +    +ST + ++Y+
Sbjct: 371 YRRMIWSSSARPNEATFISVLEACS-FAD--EGIKIHQHIVDSGIVHSTMISTAIFNMYA 427

Query: 461 KCGSLESAHKIFSEI-----PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP 515
           KCG L+ A +IFS +       +  + V W  +I+    HG  + A+ LF+EM   G +P
Sbjct: 428 KCGRLDRAREIFSSMRASRGSFQSANDVSWMNMISALARHGSIDEALELFREMRLEGGKP 487

Query: 516 NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDL 575
           +E+ F S LH CSH G +++GL  F  M+++H    R +HY C++DLLGR G LD A DL
Sbjct: 488 SEIVFISILHGCSHSGTMEQGLGHFLAMIQDHGLAPRVEHYGCLIDLLGRGGHLDLAQDL 547

Query: 576 IRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           +  MP +P    W   LG+C +H + +  E AA  +FELEPE    YV L
Sbjct: 548 VDQMPFEPDARAWSNFLGSCRLHSDRDRAEAAAIRVFELEPEKAAIYVSL 597



 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 155/516 (30%), Positives = 254/516 (49%), Gaps = 52/516 (10%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           LH  +   G    T+V N ++ MY   G V  A  VF ++   +V SWN +I+ + +N +
Sbjct: 1   LHCWIRERGHGSSTYVSNMIVQMYGKCGSVDDAWIVFSSIQARNVFSWNMIIAAFAQNGH 60

Query: 193 AKEALVVFDWMLKS--GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
            + ++ +F  M++   G+ P   + ++ L A   LK +  GR IHEL     L  + A  
Sbjct: 61  PERSVALFWRMIREEPGIIP---TRITFLHALEKLKNLAEGRKIHELAITVGLESDPAVG 117

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
            A+V MY K  S+ +A+ VFD++  RDVV WT++I  Y  NG    AL L+  M  +GV 
Sbjct: 118 TAIVTMYGKSRSLADAKRVFDQLKRRDVVAWTALITAYTQNGHCEEALDLYSSMDPDGVA 177

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           PN  T   ++ AC+ L  L  G ++HA      LE  + V  +LI++Y  C  ++ + ++
Sbjct: 178 PNQYTFTIVIDACAELGRLDVGIAIHARITAAGLESWIEVANSLINLYGNCKRLRDAERI 237

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE-VVEPNDATLNSLLPAYAILAD 429
           F R  ++ +V WN+++A   HNG    A++L+++M  +  V+ +  T  ++L A     D
Sbjct: 238 FQRMPRRSSVSWNSMIAAYAHNGHPGDAIDLYKRMRGDGSVKLDPVTFVNVLGACYSQED 297

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L    +IH   I  G  S + +++  + +Y +CGS+E +   F  + IKD   V WS +I
Sbjct: 298 LAAGRSIHRDAIARGLGSHLVLASAAVSMYGRCGSVEESMATFERMEIKDG--VAWSAVI 355

Query: 490 AGYGMHGHGETAVSLFKEMV-QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN-- 546
           A    +G   +A+  ++ M+  S  +PNE TF S L ACS     DEG+ +   ++++  
Sbjct: 356 AALAQNGESSSALHFYRRMIWSSSARPNEATFISVLEACS---FADEGIKIHQHIVDSGI 412

Query: 547 -HQT------------CSRADH----------------------YTCIVDLLGRAGRLDE 571
            H T            C R D                       +  ++  L R G +DE
Sbjct: 413 VHSTMISTAIFNMYAKCGRLDRAREIFSSMRASRGSFQSANDVSWMNMISALARHGSIDE 472

Query: 572 AYDLIRTMPL---KPTHAVWGALLGACVIHGNVELG 604
           A +L R M L   KP+  V+ ++L  C   G +E G
Sbjct: 473 ALELFREMRLEGGKPSEIVFISILHGCSHSGTMEQG 508


>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
 gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
 gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 609

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 189/550 (34%), Positives = 313/550 (56%), Gaps = 9/550 (1%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGE-VKAARKVFDAM 172
           Y  +++ C  +     GI  H  V+ +G + D  VGN L+++Y   G  ++  R+VFD  
Sbjct: 64  YASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGR 123

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
           +    +SW +++SGY       +AL VF  M+  G++ +  ++ S + AC  L E+ +GR
Sbjct: 124 FVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGR 183

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
             H +V       N    + L  +Y       +AR VFD M E DV+ WT++++ ++ N 
Sbjct: 184 CFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKND 243

Query: 293 DVRNALGLFQLM-QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
               ALGLF  M + +G+ P+  T G++L+AC +L  LK+G+ +H   I   +   V+VE
Sbjct: 244 LYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVE 303

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
           ++L+DMY KC  V+ + QVF   SKK +V W+A+L G   NG   KA+E+FR+M     E
Sbjct: 304 SSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREM----EE 359

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
            +     ++L A A LA ++    IH   +R G    V V + LID+Y K G ++SA ++
Sbjct: 360 KDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRV 419

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           +S++ I++  ++ W+ +++    +G GE AVS F +MV+ G++P+ ++F + L AC H G
Sbjct: 420 YSKMSIRN--MITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAILTACGHTG 477

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
           ++DEG + F  M +++      +HY+C++DLLGRAG  +EA +L+     +   ++WG L
Sbjct: 478 MVDEGRNYFVLMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLERAECRNDASLWGVL 537

Query: 592 LGACVIHGNV-ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LG C  + +   + E  AK + ELEP+   +YVLLS +Y A+ R  DA N+R +M  +G+
Sbjct: 538 LGPCAANADASRVAERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDALNIRKLMVRRGV 597

Query: 651 RKAPAHSLIE 660
            K    S I+
Sbjct: 598 AKTVGQSWID 607



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 140/497 (28%), Positives = 256/497 (51%), Gaps = 13/497 (2%)

Query: 1   MNGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH 59
           +N      +P T  L   L+Q      S     Q HA ++ SG     ++ +SL+  Y  
Sbjct: 49  LNSTHSSEIPATPKLYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRNVGNSLLSLYFK 108

Query: 60  VS----NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
           +       R +FD    + +  + ++M  Y        +L++F+ M+  G  + + +T  
Sbjct: 109 LGPGMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFG-LDANEFTLS 167

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
             +KAC++L   +LG   HG V+  GF+ + F+ + L  +Y    E   AR+VFD M E 
Sbjct: 168 SAVKACSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEP 227

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMI 234
            V+ W  ++S + KN   +EAL +F  M +  G+ PD ++  +VL ACG L+ ++ G+ I
Sbjct: 228 DVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEI 287

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H  +    +G N+   ++L+DMY KCGSV EAR VF+ MS+++ V+W++++ GY  NG+ 
Sbjct: 288 HGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEH 347

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             A+ +F+ M+      +    G++L AC+ L  ++ G+ +H   +++     VIVE+AL
Sbjct: 348 EKAIEIFREME----EKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESAL 403

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           ID+Y K   +  + +V+++ S +  + WNA+L+    NG   +AV  F  M+ + ++P+ 
Sbjct: 404 IDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDY 463

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
            +  ++L A      + +  N    + + YG     E  + +ID+  + G  E A  +  
Sbjct: 464 ISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLE 523

Query: 474 EIPIKDKDIVVWSVIIA 490
               ++ D  +W V++ 
Sbjct: 524 RAECRN-DASLWGVLLG 539



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 205/426 (48%), Gaps = 20/426 (4%)

Query: 35  LHAFIITSGPLFTH-LRSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
            H  +IT G  + H + S+L   YG      + R +FDEM E     +  V+  +++N  
Sbjct: 185 FHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDL 244

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             ++L +F  M R     PD  T+  V+ AC +L   K G  +HG+++  G   +  V +
Sbjct: 245 YEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVES 304

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            L+ MY   G V+ AR+VF+ M + + VSW+ L+ GY +N   ++A+ +F  M     E 
Sbjct: 305 SLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREM----EEK 360

Query: 211 DCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           D     +VL AC  L  + +G+ IH + V  G  G N+   +AL+D+Y K G ++ A  V
Sbjct: 361 DLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFG-NVIVESALIDLYGKSGCIDSASRV 419

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           + +MS R+++TW +M++  A NG    A+  F  M  +G++P+ ++  ++L+AC     +
Sbjct: 420 YSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAILTACGHTGMV 479

Query: 330 KRGRSL-----HAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP-WN 383
             GR+       ++ IK   E      + +ID+  +  L + +  +  R   +     W 
Sbjct: 480 DEGRNYFVLMAKSYGIKPGTE----HYSCMIDLLGRAGLFEEAENLLERAECRNDASLWG 535

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
            +L  C  N  A +  E   + ++E+      +   L   Y  +     A+NI   ++R 
Sbjct: 536 VLLGPCAANADASRVAERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDALNIRKLMVRR 595

Query: 444 GFLSVV 449
           G    V
Sbjct: 596 GVAKTV 601


>gi|223635620|sp|O49680.2|PP324_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19220, mitochondrial; Flags: Precursor
          Length = 951

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 205/646 (31%), Positives = 335/646 (51%), Gaps = 17/646 (2%)

Query: 33  KQLHAFIITSG---PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYA 86
           + LH  +I SG        + +S++  Y   G       +F+E+  R     N ++  +A
Sbjct: 309 ESLHGLVIKSGYSPEAHVSVGNSIISMYSKCGDTEAAETVFEELVCRDVISSNAILNGFA 368

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
            NG   ++  +   M  + +  PD  T   +   C DL++ + G A+HG  +        
Sbjct: 369 ANGMFEEAFGILNQMQSVDKIQPDIATVVSITSICGDLSFSREGRAVHGYTVRMEMQSRA 428

Query: 147 F-VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
             V N +I MY   G    A  +F       +VSWN++IS + +N +  +A  +F  ++ 
Sbjct: 429 LEVINSVIDMYGKCGLTTQAELLFKTTTHRDLVSWNSMISAFSQNGFTHKAKNLFKEVVS 488

Query: 206 --SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
             S  +   ++V+++L +C     +  G+ +H  +     G N+ + N++++MY+ C  +
Sbjct: 489 EYSCSKFSLSTVLAILTSCDSSDSLIFGKSVHCWLQKLGFGDNMLSANSVINMYIGCRDL 548

Query: 264 NEARLVFDRMSE-RDVVTWTSMINGYALNGDVRNALGLFQLMQFEG-VRPNSLTIGSLLS 321
             A L  + MSE RD+ +W S+I+G A +G    +L  FQ M  EG +R + +T+   +S
Sbjct: 549 TSAFLRLETMSETRDLTSWNSVISGCASSGHHLESLRAFQAMSREGKIRHDLITLLGTIS 608

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
           A  +L  + +GR  H   IK   E +  ++  LI MY +C  ++ + +VF   S      
Sbjct: 609 ASGNLGLVLQGRCFHGLAIKSLRELDTQLQNTLITMYGRCKDIESAVKVFGLISDPNLCS 668

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           WN +++    N   R+  +LFR +    +EPN+ T   LL A   L      M  HC+LI
Sbjct: 669 WNCVISALSQNKAGREVFQLFRNL---KLEPNEITFVGLLSASTQLGSTSYGMQAHCHLI 725

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           R GF +   VS  L+D+YS CG LE+  K+F    +    I  W+ +I+ +G HG GE A
Sbjct: 726 RRGFQANPFVSAALVDMYSSCGMLETGMKVFRNSGVNS--ISAWNSVISAHGFHGMGEKA 783

Query: 502 VSLFKEMV-QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560
           + LFKE+   S ++PN+ +F S L ACSH G +DEGL  +  M E        +H   IV
Sbjct: 784 MELFKELSSNSEMEPNKSSFISLLSACSHSGFIDEGLSYYKQMEEKFGVKPVTEHRVWIV 843

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620
           D+LGRAG+L EAY+ I  +       VWGALL AC  HG+ +LG+  A+ LFE+EP+N  
Sbjct: 844 DMLGRAGKLREAYEFITGIGEPQKAGVWGALLSACNYHGDTKLGKEVAEVLFEMEPDNAS 903

Query: 621 NYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILT 666
            Y+ L+  Y  +  W++A  +R ++++  L+K P +S+I+VR + T
Sbjct: 904 YYISLANTYVGLGGWEEAVRLRKMVEDNALKKLPGYSVIDVRCLDT 949



 Score =  218 bits (555), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 161/619 (26%), Positives = 288/619 (46%), Gaps = 55/619 (8%)

Query: 33  KQLHAFIITSGPLFTHLRSS-LVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQN 88
           + +H F +  G L     SS L+  YG    +     LFDE+ E+   ++N+++    QN
Sbjct: 107 RSVHCFALKCGLLQDLATSSKLLTFYGRTGELVSSSCLFDELKEKDVIVWNSMITALNQN 166

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G    ++ +F+ M+  G                +    RK  + LH   + TG   D+ +
Sbjct: 167 GRYIAAVGLFIEMIHKGNEFDSTTLLLAASALSSLHLSRKCSM-LHCLAIETGLVGDSSL 225

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+ +Y     + +A  VF  M    +VSWNT+++    N + +++L  F  M  SG 
Sbjct: 226 CNALMNLYAKGENLSSAECVFTHMEHRDIVSWNTIMTKCLANGHPRKSLQYFKSMTGSGQ 285

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELV--AGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           E D  +   V+ AC  ++E+ +G  +H LV  +G     +++  N+++ MY KCG    A
Sbjct: 286 EADTVTFSCVISACSSIEELTLGESLHGLVIKSGYSPEAHVSVGNSIISMYSKCGDTEAA 345

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ-FEGVRPNSLTIGSLLSACSS 325
             VF+ +  RDV++  +++NG+A NG    A G+   MQ  + ++P+  T+ S+ S C  
Sbjct: 346 ETVFEELVCRDVISSNAILNGFAANGMFEEAFGILNQMQSVDKIQPDIATVVSITSICGD 405

Query: 326 LYYLKRGRSLHAWTIKQNLECEVI-VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
           L + + GR++H +T++  ++   + V  ++IDMY KC L   +  +F  T+ +  V WN+
Sbjct: 406 LSFSREGRAVHGYTVRMEMQSRALEVINSVIDMYGKCGLTTQAELLFKTTTHRDLVSWNS 465

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA------MNIHC 438
           +++    NG   KA  LF+    EVV     +  SL    AIL     +       ++HC
Sbjct: 466 MISAFSQNGFTHKAKNLFK----EVVSEYSCSKFSLSTVLAILTSCDSSDSLIFGKSVHC 521

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           +L + GF   +  +  +I++Y  C  L SA  +  E   + +D+  W+ +I+G    GH 
Sbjct: 522 WLQKLGFGDNMLSANSVINMYIGCRDLTSAF-LRLETMSETRDLTSWNSVISGCASSGHH 580

Query: 499 ETAVSLFKEMVQSG-VQPNEVTFTSALHACSHGGLLDEG-------------LD--LFNF 542
             ++  F+ M + G ++ + +T    + A  + GL+ +G             LD  L N 
Sbjct: 581 LESLRAFQAMSREGKIRHDLITLLGTISASGNLGLVLQGRCFHGLAIKSLRELDTQLQNT 640

Query: 543 MLENHQTCSRAD---------------HYTCIVDLLG--RAGRLDEAYDLIRTMPLKPTH 585
           ++  +  C   +                + C++  L   +AGR  E + L R + L+P  
Sbjct: 641 LITMYGRCKDIESAVKVFGLISDPNLCSWNCVISALSQNKAGR--EVFQLFRNLKLEPNE 698

Query: 586 AVWGALLGACVIHGNVELG 604
             +  LL A    G+   G
Sbjct: 699 ITFVGLLSASTQLGSTSYG 717



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 114/451 (25%), Positives = 204/451 (45%), Gaps = 29/451 (6%)

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAY--AKEALVVFDWMLKSGVEPDCASVVSVLP----- 220
           + D++  HS+  WN+  SGY  N Y   ++    F   + S V P   ++   LP     
Sbjct: 24  IIDSL-RHSISRWNS-PSGYCSNYYFSKRKHKRHFTSSVLSPVTPIVHNLFDELPERENR 81

Query: 221 ----ACGYLK----------EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
               +  +L+          E E  R +H       L +++A  + L+  Y + G +  +
Sbjct: 82  TMESSFMFLRDVLRSFMMRTETETPRSVHCFALKCGLLQDLATSSKLLTFYGRTGELVSS 141

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
             +FD + E+DV+ W SMI     NG    A+GLF  M  +G   +S T+    SA SSL
Sbjct: 142 SCLFDELKEKDVIVWNSMITALNQNGRYIAAVGLFIEMIHKGNEFDSTTLLLAASALSSL 201

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
           +  ++   LH   I+  L  +  +  AL+++YAK   +  +  VF     +  V WN I+
Sbjct: 202 HLSRKCSMLHCLAIETGLVGDSSLCNALMNLYAKGENLSSAECVFTHMEHRDIVSWNTIM 261

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
             C+ NG  RK+++ F+ M     E +  T + ++ A + + +L    ++H  +I+ G+ 
Sbjct: 262 TKCLANGHPRKSLQYFKSMTGSGQEADTVTFSCVISACSSIEELTLGESLHGLVIKSGYS 321

Query: 447 SVVEVSTG--LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
               VS G  +I +YSKCG  E+A  +F E+    +D++  + I+ G+  +G  E A  +
Sbjct: 322 PEAHVSVGNSIISMYSKCGDTEAAETVFEELVC--RDVISSNAILNGFAANGMFEEAFGI 379

Query: 505 FKEMVQ-SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563
             +M     +QP+  T  S    C       EG  +  + +         +    ++D+ 
Sbjct: 380 LNQMQSVDKIQPDIATVVSITSICGDLSFSREGRAVHGYTVRMEMQSRALEVINSVIDMY 439

Query: 564 GRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           G+ G   +A  L +T   +     W +++ A
Sbjct: 440 GKCGLTTQAELLFKTTTHRDL-VSWNSMISA 469


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 331/615 (53%), Gaps = 52/615 (8%)

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           F ++ E +   +  +M   A +   +++ ++F  MLR    + D+ +   V+  C+    
Sbjct: 166 FGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLR-NRIHVDSVSLSSVLGVCSRGGC 224

Query: 127 RKLGI---------ALHGR-----VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
            + G+          +HG+      +  GF+ D  + N L+ MY   G + +A  +F  M
Sbjct: 225 GEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNM 284

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
            E SVVSWN +I+GY + + + +A+     M   G EPD  + V++L AC          
Sbjct: 285 PEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVAC---------- 334

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
                                    +K G +   R +FD MS   + +W ++++GY+ N 
Sbjct: 335 -------------------------IKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNE 369

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
           + + A+ LF+ MQF  V P+  T+  +LS+ + +  L+ GR +HA + K     ++ + +
Sbjct: 370 NHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLAS 429

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
            LI MY+KC  V+++ ++F R ++   V WN+++AG   N L ++A   F++M  + + P
Sbjct: 430 GLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFP 489

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           +  +  ++L   A L+ L Q   +H  + R G+++   V + LID+YSKCG +++A  +F
Sbjct: 490 SQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVF 549

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
               +  K+ V W+ +I GY  +G G+ AV L+++M+ SG +P+ +TF + L ACSH GL
Sbjct: 550 D--MMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGL 607

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           +D G+ +FN M + H      DHYTCI+D LGRAGRL EA  LI  MP K    +W  LL
Sbjct: 608 VDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLL 667

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
            +C ++ +V L   AA+ LF L+P+N   YVLL+ +YS++ RW DA+ VR++M    + K
Sbjct: 668 SSCRVYADVSLARRAAEELFHLDPQNSAPYVLLANIYSSLGRWDDAKAVRELMSYNQVVK 727

Query: 653 APAHSLIEVRNILTA 667
            P +S IE +N + A
Sbjct: 728 DPGYSWIEHKNGMQA 742



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/431 (25%), Positives = 203/431 (47%), Gaps = 30/431 (6%)

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           +E     + S+L  C   K    G++IH  +   RL  +    N L++ Y KC +++ +R
Sbjct: 1   METKTTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASR 60

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL--SACSS 325
            +FD+M +RD+ TW +++  Y    ++ +A  LF  M    +   +  I +L    AC +
Sbjct: 61  RLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGA 120

Query: 326 LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
           L  ++ GR  H  +IK  L+  + V  AL+ MYAKC  +  + Q F    +   V + A+
Sbjct: 121 LVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAM 180

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL--------------PAYAILADLQ 431
           + G   +    +A  LFR ML   +  +  +L+S+L               +  +L+   
Sbjct: 181 MGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDV 240

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               +HC  I++GF S + ++  L+D+Y+K G+++SA  IF  +P  +  +V W+V+IAG
Sbjct: 241 HGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMP--EVSVVSWNVMIAG 298

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           YG       A+   + M   G +P+E+T+ + L AC   G ++ G  +F+ M     +  
Sbjct: 299 YGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGM-----SSP 353

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA-------VWGALLGACVIHGNVELG 604
               +  I+    +     EA  L R M  +  H        +  +L G  ++ G  ++ 
Sbjct: 354 SLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVH 413

Query: 605 EVAAKWLFELE 615
            V+ K +F  +
Sbjct: 414 AVSQKAVFRTD 424



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 176/349 (50%), Gaps = 8/349 (2%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +   R +FD MS  S   +NT++  Y+QN    +++K+F  M +    +PD  T  I+
Sbjct: 338 GDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREM-QFRSVHPDRTTLAII 396

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + +   +   + G  +H       F  D ++ + LI MY   G+V+ A+++FD + E  +
Sbjct: 397 LSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDI 456

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V WN++++G   N+  KEA   F  M + G+ P   S  +VL  C  L  +  GR +H  
Sbjct: 457 VCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQVHSQ 516

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +A      +    +AL+DMY KCG V+ AR VFD M  ++ VTW  MI+GYA NG    A
Sbjct: 517 IAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEA 576

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE--TALI 355
           + L++ M   G +P+ +T  ++L+ACS    +  G  +   +++Q    E +V+  T +I
Sbjct: 577 VLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFN-SMQQEHGVEPLVDHYTCII 635

Query: 356 DMYAKC-NLVKLSFQVFARTSKKKTVPWNAILAGC---VHNGLARKAVE 400
           D   +   L +    +     K   + W  +L+ C       LAR+A E
Sbjct: 636 DSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAE 684



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 114/437 (26%), Positives = 197/437 (45%), Gaps = 55/437 (12%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           +++ C D      G  +H  +L +    DTF+ N LI  Y     + A+R++FD M +  
Sbjct: 11  LLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQMPKRD 70

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLP---ACGYLKEIEMGRM 233
           + +WN ++  Y K +  ++A V+F  M +  +     +++S L    ACG L ++E GR 
Sbjct: 71  IYTWNAILGAYCKASELEDAHVLFAEMPERNI-VSWNTLISALTRNGACGALVDVECGRR 129

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
            H +     L  NI   NAL+ MY KC  + +A   F  + E + V++T+M+ G A +  
Sbjct: 130 CHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQ 189

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSS--------------LYYLKRGRSLHAWT 339
           V  A  LF+LM    +  +S+++ S+L  CS               L     G+ +H  T
Sbjct: 190 VNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLT 249

Query: 340 IKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAV 399
           IK   E ++ +  +L+DMYAK   +  +  +F    +   V WN ++AG      + KA+
Sbjct: 250 IKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAI 309

Query: 400 ELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459
           E  ++M     EP++ T  ++L A              C                     
Sbjct: 310 EYLQRMQYHGFEPDEITYVNMLVA--------------CI-------------------- 335

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
            K G +E+  ++F    +    +  W+ I++GY  + + + AV LF+EM    V P+  T
Sbjct: 336 -KSGDIEAGRQMFD--GMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTT 392

Query: 520 FTSALHACSHGGLLDEG 536
               L + +   LL+ G
Sbjct: 393 LAIILSSLAGMMLLEGG 409



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 79/169 (46%), Gaps = 9/169 (5%)

Query: 24  AATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAY---GHVSNVRILFDEMSERSSFLYN 79
           A   S++  +Q+H+ I   G +    + S+L+  Y   G V   R +FD M  +++  +N
Sbjct: 502 AKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWN 561

Query: 80  TVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLI 139
            ++  YAQNG   +++ ++  M+  GE  PD  T+  V+ AC+       GI +    + 
Sbjct: 562 EMIHGYAQNGCGDEAVLLYEDMIGSGE-KPDGITFVAVLTACSHSGLVDTGIKIFNS-MQ 619

Query: 140 TGFDMDTFVGN--CLIAMYMNFGEVKAARKVFDAM-WEHSVVSWNTLIS 185
               ++  V +  C+I      G +  A  + D M  ++  + W  L+S
Sbjct: 620 QEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLS 668


>gi|357131661|ref|XP_003567454.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
           mitochondrial-like [Brachypodium distachyon]
          Length = 924

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 197/608 (32%), Positives = 330/608 (54%), Gaps = 11/608 (1%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +G   +   +F  + +++   +N ++K   +N  + ++L +F  ML   E  PD  T   
Sbjct: 322 FGFPEDAEKVFMRIFKKNHVSWNVMIKGLMENEKAGEALAVFREML--SECQPDFATLVA 379

Query: 117 VIKACTDLAWRKLGIALHGRVLITG-FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           VI +C D      G A+HG +     F +++ +GN L+ +YM   +   A  +F  M   
Sbjct: 380 VILSCGDQGLLCEGKAIHGYITRKCLFHVESSLGNSLLGLYMKCDDAYTANLLFRTMPIR 439

Query: 176 SVVSWNTLISGYFKN-AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
            ++SWNT++SGY ++ +  +EA  +F  +L  G+     ++++V+P+C   +++  G+ +
Sbjct: 440 DLISWNTMLSGYSRDDSLREEAQAMFRELLSEGLSCTMTTILAVIPSCSCPEDLRFGKAV 499

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCG-SVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           H  V        ++  NAL+ MY+ CG S+    L+   M   D+++W + + G   NG 
Sbjct: 500 HSFVLKYGFASGVSVVNALMHMYICCGDSLVAFTLLGSIMPVSDIISWNTAVVGCVQNGL 559

Query: 294 VRNALGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
            R AL  FQ M     + P+S+T+ S+LSAC +L     G+S+H+  +K+ L   + V+ 
Sbjct: 560 HRGALEAFQFMHSSLPLNPDSITLVSVLSACGTLKLQSLGKSIHSMALKRLLVFNLRVKN 619

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           AL+ MY +    + +  +F     +    WN +++G   N   R+A++ +++M  E   P
Sbjct: 620 ALLTMYFRFADTESAELIFYSLGDRNLCSWNCMVSGFAQNNDGRRALQFYQKM--EKFVP 677

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           N+    S++ A   L D++   +IH ++++    + V +S  L+D+YSKCG L+ A ++F
Sbjct: 678 NEMCTVSIICACTQLRDVRHGKSIHGHVVKSDLQNNVFLSASLVDMYSKCGRLDIAVRVF 737

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
                 +K I  W+ +I+ +G HGHG  ++ LF  M+ SG++    TF + L ACSH GL
Sbjct: 738 ESS--TEKSIACWNSMISAFGFHGHGLRSIELFCSMIHSGMKATRSTFIALLSACSHAGL 795

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL-KPTHAVWGAL 591
            DEGL  +N M E        +H+ CIVD+LGRAGRL EA+  + ++P  K  H VWGAL
Sbjct: 796 TDEGLKYYNLMSEKFGITPTPEHHVCIVDMLGRAGRLQEAHKFVESLPKSKEAHGVWGAL 855

Query: 592 LGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651
           L AC     + +GE  A+ L  LEPEN G YV +S LY+    W  A  VRD++ +K L 
Sbjct: 856 LSACSNKSELRMGEAIARQLLCLEPENSGYYVTISNLYAYQDMWGGAVQVRDILQDKRLM 915

Query: 652 KAPAHSLI 659
           K   HS++
Sbjct: 916 KPHGHSIV 923



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 131/531 (24%), Positives = 248/531 (46%), Gaps = 26/531 (4%)

Query: 16  VIKLVQQYAATKSIAGT-KQLHAFIITSGPLF-THLRSSLVRAYGHVSN--------VRI 65
           +++ +++Y A   +AG+ + LH   + SG +    +R+SL+ AY    +          +
Sbjct: 67  IVRALREYDAP--LAGSVESLHCAALKSGAVLDPPVRTSLLAAYARCPSGGDHDARAALV 124

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LF E  +    L+N V+    +     D++ +F  M  +     D+ T  +++   +   
Sbjct: 125 LFHEAEDPDVILWNAVIGALTRACRLGDAVALFRRMAGVRGEAFDSTTVVVMLSGASRAG 184

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
              LG+ALH   +    D D  + N L+ MY   G    +  VF +M      SWN++  
Sbjct: 185 ELDLGMALHAAAVKRRLDTDMNLWNALVDMYAKCGSFCDSEAVFWSMPCWDTASWNSVTG 244

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI-EMGRMIHELVAGGRLG 244
           G   N  ++ +   F  M++  V+ D  ++ SV+ A    + +   G  +H  +   +LG
Sbjct: 245 GSTFNGLSEVSACYFREMIRLAVQADEVTLSSVISASSRAEGLFSFGESVHGCIV--KLG 302

Query: 245 KNIAA----WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
               A     N+L+  Y + G   +A  VF R+ +++ V+W  MI G   N     AL +
Sbjct: 303 YEDTAPCSVANSLITFYFEFGFPEDAEKVFMRIFKKNHVSWNVMIKGLMENEKAGEALAV 362

Query: 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL-ECEVIVETALIDMYA 359
           F+ M  E  +P+  T+ +++ +C     L  G+++H +  ++ L   E  +  +L+ +Y 
Sbjct: 363 FREMLSE-CQPDFATLVAVILSCGDQGLLCEGKAIHGYITRKCLFHVESSLGNSLLGLYM 421

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAG-CVHNGLARKAVELFRQMLVEVVEPNDATLN 418
           KC+    +  +F     +  + WN +L+G    + L  +A  +FR++L E +     T+ 
Sbjct: 422 KCDDAYTANLLFRTMPIRDLISWNTMLSGYSRDDSLREEAQAMFRELLSEGLSCTMTTIL 481

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI-PI 477
           +++P+ +   DL+    +H ++++YGF S V V   L+ +Y  CG    A  +   I P+
Sbjct: 482 AVIPSCSCPEDLRFGKAVHSFVLKYGFASGVSVVNALMHMYICCGDSLVAFTLLGSIMPV 541

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS-GVQPNEVTFTSALHAC 527
              DI+ W+  + G   +G    A+  F+ M  S  + P+ +T  S L AC
Sbjct: 542 --SDIISWNTAVVGCVQNGLHRGALEAFQFMHSSLPLNPDSITLVSVLSAC 590



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 139/510 (27%), Positives = 237/510 (46%), Gaps = 19/510 (3%)

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFG-----EVKAARKVFDAMWEHSVVSWNTLISG 186
           +LH   L +G  +D  V   L+A Y         + +AA  +F    +  V+ WN +I  
Sbjct: 84  SLHCAALKSGAVLDPPVRTSLLAAYARCPSGGDHDARAALVLFHEAEDPDVILWNAVIGA 143

Query: 187 YFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
             +     +A+ +F  M    G   D  +VV +L       E+++G  +H      RL  
Sbjct: 144 LTRACRLGDAVALFRRMAGVRGEAFDSTTVVVMLSGASRAGELDLGMALHAAAVKRRLDT 203

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           ++  WNALVDMY KCGS  ++  VF  M   D  +W S+  G   NG    +   F+ M 
Sbjct: 204 DMNLWNALVDMYAKCGSFCDSEAVFWSMPCWDTASWNSVTGGSTFNGLSEVSACYFREMI 263

Query: 306 FEGVRPNSLTIGSLLSACSSLYYL-KRGRSLHAWTIKQNLE--CEVIVETALIDMYAKCN 362
              V+ + +T+ S++SA S    L   G S+H   +K   E      V  +LI  Y +  
Sbjct: 264 RLAVQADEVTLSSVISASSRAEGLFSFGESVHGCIVKLGYEDTAPCSVANSLITFYFEFG 323

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
             + + +VF R  KK  V WN ++ G + N  A +A+ +FR+ML E  +P+ ATL +++ 
Sbjct: 324 FPEDAEKVFMRIFKKNHVSWNVMIKGLMENEKAGEALAVFREMLSE-CQPDFATLVAVIL 382

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTG--LIDIYSKCGSLESAHKIFSEIPIKDK 480
           +      L +   IH Y+ R      VE S G  L+ +Y KC    +A+ +F  +PI  +
Sbjct: 383 SCGDQGLLCEGKAIHGYITRKCLFH-VESSLGNSLLGLYMKCDDAYTANLLFRTMPI--R 439

Query: 481 DIVVWSVIIAGYGMHGH-GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539
           D++ W+ +++GY       E A ++F+E++  G+     T  + + +CS    L  G  +
Sbjct: 440 DLISWNTMLSGYSRDDSLREEAQAMFRELLSEGLSCTMTTILAVIPSCSCPEDLRFGKAV 499

Query: 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT-MPLKPTHAVWGALLGACVIH 598
            +F+L+ +   S       ++ +    G    A+ L+ + MP+    + W   +  CV +
Sbjct: 500 HSFVLK-YGFASGVSVVNALMHMYICCGDSLVAFTLLGSIMPVSDIIS-WNTAVVGCVQN 557

Query: 599 GNVELGEVAAKWLFELEPENPGNYVLLSKL 628
           G       A +++    P NP +  L+S L
Sbjct: 558 GLHRGALEAFQFMHSSLPLNPDSITLVSVL 587


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/572 (33%), Positives = 303/572 (52%), Gaps = 44/572 (7%)

Query: 133 LHGRVLITG-----FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           +H +++ TG     F +   +  C ++ +   G++  A  +F  +   + V WN +I G 
Sbjct: 47  IHSQIIKTGLHNTHFALSKLIEFCAVSPH---GDLSYALSLFKTIRNPNHVIWNHMIRGL 103

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
             +     AL  +  M+ SG EP+  +  S+  +C  ++    G+ +H  V    L  N 
Sbjct: 104 SSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNA 163

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERD------------------------------ 277
               +L++MY + G +  ARLVFD+ S RD                              
Sbjct: 164 FVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVR 223

Query: 278 -VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS-SLYYLKRGRSL 335
            VV+W +MI+GYA +G V  A+  F+ M+   V PN  T+ S+LSAC+ S   L+ G  +
Sbjct: 224 DVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWV 283

Query: 336 HAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLA 395
            +W   + L   + +   LIDMY KC  ++ +  +F +   K  V WN ++ G  H    
Sbjct: 284 RSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCY 343

Query: 396 RKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR--YGFLSVVEVST 453
           ++A+ LFR+M+   ++PND T  S+LPA A L  L     +H Y+ +      + V + T
Sbjct: 344 KEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWT 403

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            LID+Y+KCG L  A +IF    +  K +  W+ +I+G+ MHGH +TA+ LF  M   G 
Sbjct: 404 SLIDMYAKCGDLAVAKRIFD--CMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGF 461

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
            P+++TF   L AC H GLL  G   F+ M+++++   +  HY C++DL GRAG  DEA 
Sbjct: 462 VPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAE 521

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633
            L++ M +KP  A+W +LLGAC IH  +EL E  AK LFELEPENP  YVLLS +Y+   
Sbjct: 522 TLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAG 581

Query: 634 RWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           RW+D   +R  +++  ++K P  S IEV +++
Sbjct: 582 RWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVV 613



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 148/525 (28%), Positives = 258/525 (49%), Gaps = 43/525 (8%)

Query: 27  KSIAGTKQLHAFIITSGPLFTHLRSS------LVRAYGHVSNVRILFDEMSERSSFLYNT 80
           K++   KQ+H+ II +G   TH   S       V  +G +S    LF  +   +  ++N 
Sbjct: 39  KTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNH 98

Query: 81  VMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT 140
           +++  + + +   +L+ ++ M+  G   P+ YT+P + K+CT +     G  +H  VL  
Sbjct: 99  MIRGLSSSESPFLALEYYVHMISSGT-EPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKL 157

Query: 141 GFDMDTFVGNCLIAMYMNFGE-------------------------------VKAARKVF 169
           G + + FV   LI MY   GE                               +  AR++F
Sbjct: 158 GLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELF 217

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL-KEI 228
           D +    VVSWN +ISGY ++   +EA+  F+ M ++ V P+ ++++SVL AC      +
Sbjct: 218 DEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSL 277

Query: 229 EMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
           ++G  +   +    LG NI   N L+DMYVKCG + EA  +F+++ +++VV+W  MI GY
Sbjct: 278 QLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGY 337

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK--QNLEC 346
                 + ALGLF+ M    + PN +T  S+L AC++L  L  G+ +HA+  K  ++++ 
Sbjct: 338 THMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKN 397

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
            V + T+LIDMYAKC  + ++ ++F   + K    WNA+++G   +G    A+ LF +M 
Sbjct: 398 TVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMT 457

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSL 465
            E   P+D T   +L A      L         +I+ Y     +     +ID++ + G  
Sbjct: 458 SEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLF 517

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           + A  +   + +K  D  +W  ++    +H   E A S+ K + +
Sbjct: 518 DEAETLVKNMEMK-PDGAIWCSLLGACRIHRRIELAESVAKHLFE 561



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/389 (28%), Positives = 199/389 (51%), Gaps = 19/389 (4%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++L+  Y   G +   R LFDE+  R    +N ++  YAQ+G   +++  F  M R  + 
Sbjct: 198 TALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRR-AKV 256

Query: 108 NPDNYTYPIVIKACTDLAWR-KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR 166
            P+  T   V+ AC       +LG  +   +   G   +  + N LI MY+  G+++ A 
Sbjct: 257 TPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEAS 316

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
            +F+ + + +VVSWN +I GY   +  KEAL +F  M++S ++P+  + +S+LPAC  L 
Sbjct: 317 NLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLG 376

Query: 227 EIEMGRMIHELVAGG--RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
            +++G+ +H  V      +   +A W +L+DMY KCG +  A+ +FD M+ + + TW +M
Sbjct: 377 ALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAM 436

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ-N 343
           I+G+A++G    ALGLF  M  EG  P+ +T   +L+AC     L  GR   +  I+   
Sbjct: 437 ISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYK 496

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGC-VHNGLARKAVEL 401
           +  ++     +ID++ +  L   +  +      K     W ++L  C +H  +  +  E 
Sbjct: 497 VSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRI--ELAES 554

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADL 430
             + L E +EP + +      AY +L+++
Sbjct: 555 VAKHLFE-LEPENPS------AYVLLSNI 576


>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
 gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
          Length = 616

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 187/539 (34%), Positives = 303/539 (56%), Gaps = 12/539 (2%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
            Y  +++ C +LA    G  +H  V+  G+  + +VGN L+ MY   G ++ A+KVFD M
Sbjct: 72  AYGNLLRDCGELA---AGKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFDGM 128

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL--KEIEM 230
                +SW+ +I+GY ++  A+EA+ ++  M    ++PD  +  +VL AC  L  + +E+
Sbjct: 129 RRRDSISWSKMIAGYVRHGLAREAIKLYKAM---AIDPDGFTFSAVLNACSSLGPRALEV 185

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
           G+ IH  +    L  ++   +ALV M+ KCGS+ E+R VFD    +DV+ W SMI  Y+ 
Sbjct: 186 GKEIHAHMKRIWLKPDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQ 245

Query: 291 NGDVRNALGLFQLMQFEG--VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
           +G  R A+ LF+ M      V PN++T  ++L+ACS++  L++G+ +H   +    + + 
Sbjct: 246 SGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDA 305

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
             E +L++MYAKC  +  + +VF    ++  V W  I++  V  G  R+A++L+R+M  E
Sbjct: 306 AAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSE 365

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            VEPN  T  S+L A + L  L++   +H  +   G+   + V+  L+ +Y KCGS++SA
Sbjct: 366 GVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSA 425

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
            K+F  + I++  +V W+ +I+ Y  H H E A+ L+K M   GVQ +   + + L ACS
Sbjct: 426 RKVFDRMKIRN--VVSWTAMISAYAHHRHSEEAIQLYKAMDLEGVQASSFIYGTVLTACS 483

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
             GLL+     F  +  +    ++ + Y C+  +LGRAGRL EA +L+  MP +     W
Sbjct: 484 QAGLLESARHYFGCLTRDCGAPAKLEDYVCMATVLGRAGRLAEAEELLAVMPFEAEFVAW 543

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
             LL AC  H +VE G   A+ LF LEP N   YVLLS +Y A  R ++A  VR  M +
Sbjct: 544 MGLLAACKAHNDVERGARVAEVLFRLEPLNEAPYVLLSNIYVAAGRQEEAARVRRKMGD 602



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 143/476 (30%), Positives = 256/476 (53%), Gaps = 14/476 (2%)

Query: 29  IAGTKQLHAFIITSGPLFT-HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKM 84
           +A  K++H  ++ +G     ++ + LV+ Y   G + + + +FD M  R S  ++ ++  
Sbjct: 83  LAAGKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLEDAKKVFDGMRRRDSISWSKMIAG 142

Query: 85  YAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL--GIALHGRVLITGF 142
           Y ++G + +++K++  M      +PD +T+  V+ AC+ L  R L  G  +H  +     
Sbjct: 143 YVRHGLAREAIKLYKAMA----IDPDGFTFSAVLNACSSLGPRALEVGKEIHAHMKRIWL 198

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
             D FV + L+ M+   G +K +R+VFD      V+ WN++I  Y ++ + +EA+ +F  
Sbjct: 199 KPDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKS 258

Query: 203 MLKSG--VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           M  S   VEP+  +  +VL AC  ++++E G+ +H  +       + AA N+LV+MY KC
Sbjct: 259 MGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKC 318

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           GS+ EAR VFD M +R VV+WT +I+ Y   G  R AL L++ M  EGV PN +T  S+L
Sbjct: 319 GSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVL 378

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           SACSSL  L+ G+++HA       + ++ V  AL+ +Y KC  V  + +VF R   +  V
Sbjct: 379 SACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVV 438

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            W A+++   H+  + +A++L++ M +E V+ +     ++L A +    L+ A +    L
Sbjct: 439 SWTAMISAYAHHRHSEEAIQLYKAMDLEGVQASSFIYGTVLTACSQAGLLESARHYFGCL 498

Query: 441 IR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
            R  G  + +E    +  +  + G L  A ++ + +P  + + V W  ++A    H
Sbjct: 499 TRDCGAPAKLEDYVCMATVLGRAGRLAEAEELLAVMPF-EAEFVAWMGLLAACKAH 553



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 186/357 (52%), Gaps = 15/357 (4%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGE-YNPDNYTYPI 116
           G +   R +FD+   +    +N+++  Y+Q+G   +++++F  M        P+  TY  
Sbjct: 216 GSLKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTT 275

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           V+ AC+ +   + G  +H +++  GF  D    N L+ MY   G +  AR+VFD M + +
Sbjct: 276 VLAACSAVEDLEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRT 335

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           VVSW  +IS Y +  + +EAL ++  M   GVEP+  +  SVL AC  L  +E G+ +H 
Sbjct: 336 VVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHA 395

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            +       ++A  NALV +Y KCGSV+ AR VFDRM  R+VV+WT+MI+ YA +     
Sbjct: 396 QMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISAYAHHRHSEE 455

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ-----NLECEVIVE 351
           A+ L++ M  EGV+ +S   G++L+ACS    L+  R       +       LE  V + 
Sbjct: 456 AIQLYKAMDLEGVQASSFIYGTVLTACSQAGLLESARHYFGCLTRDCGAPAKLEDYVCMA 515

Query: 352 TALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGC-VHNGL---ARKAVELFR 403
           T L     +   +  + ++ A    + + V W  +LA C  HN +   AR A  LFR
Sbjct: 516 TVL----GRAGRLAEAEELLAVMPFEAEFVAWMGLLAACKAHNDVERGARVAEVLFR 568


>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
 gi|194688792|gb|ACF78480.1| unknown [Zea mays]
          Length = 706

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 202/668 (30%), Positives = 339/668 (50%), Gaps = 77/668 (11%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           M +R++  +NTV+   A++G+  ++L+M+ GML+ G   P N+T   V+ AC  +A    
Sbjct: 1   MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEG-LAPTNFTLASVLSACGAVAALDD 59

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G   HG  +  G D   FV N L+ MY   G V  A ++FD M   + VS+  ++ G  +
Sbjct: 60  GRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQ 119

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL--------KEIEMGRMIHELVAGG 241
                +AL +F  M ++G+  D  +V SVL AC           + I++ + IH LV   
Sbjct: 120 GGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRK 179

Query: 242 RLGKN-------------------------------IAAWNALVDMY------------- 257
             G +                               I +WN L+  Y             
Sbjct: 180 GFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVL 239

Query: 258 ----------------------VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
                                 +K   V  AR +FD++ +  V TW ++++GY      +
Sbjct: 240 EFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQ 299

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
             + LF+ MQ + V+P+  T+  +LS+CS L   + G+ +H+ +++  L  ++ V + LI
Sbjct: 300 ETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLI 359

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           D+Y+KC  V ++  +F   +++  V WN++++G   + L+ +A +  +QM    + P ++
Sbjct: 360 DIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTES 419

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           +  S++   A L+ + Q   +H  +++ G+   V V   LID+Y+K G+++ A   F+ +
Sbjct: 420 SYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCM 479

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
            +K+  +V W+ +I GY  +G GE AV LF+ M+ +  +P+ VTF + L  CSH GL+DE
Sbjct: 480 IVKN--LVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSGLVDE 537

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
            +  FN M  N+      +HYTC++D L RA R  E   +I  MP K    +W  LL AC
Sbjct: 538 AVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVLLAAC 597

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
           V+H N ELGE +AK LF L+P+NP  YVLLS +Y+ + R  DA  VR +M  +G+ K   
Sbjct: 598 VVHHNAELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGVVKGRG 657

Query: 656 HSLIEVRN 663
           +S +  ++
Sbjct: 658 YSWVNHKD 665


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 173/443 (39%), Positives = 267/443 (60%), Gaps = 3/443 (0%)

Query: 217 SVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER 276
           + + AC   + +  GR +H  +   R    +     LV MYV+CG++++AR V DRM ER
Sbjct: 15  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 74

Query: 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
            VV+WT+MI+GY+       AL LF  M   G  PN  T+ ++L++CS    + +G+ +H
Sbjct: 75  SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVH 134

Query: 337 AWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR 396
           +  +K N E  + V ++L+DMYAK   ++ + +VF    ++  V   AI++G    GL  
Sbjct: 135 SLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDE 194

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLI 456
           +A++LFRQ+  E ++ N  T  +L+ A + LA L     +H  ++R      V +   LI
Sbjct: 195 EALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLI 254

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
           D+YSKCG L  + ++F  +   ++ +V W+ ++ GYG HG G   +SLFK++    V+P+
Sbjct: 255 DMYSKCGKLLYSRRVFDNM--LERSVVSWNAMLMGYGRHGLGHEVISLFKDL-HKEVKPD 311

Query: 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
            VT  + L  CSHGGL+DEGLD+F+ +++         HY CI+DLLGR+GRL++A +LI
Sbjct: 312 SVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLI 371

Query: 577 RTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWK 636
             MP + T ++WG+LLGAC +H NV +GE+ A+ L E+EPEN GNYV+LS +Y+A   WK
Sbjct: 372 ENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWK 431

Query: 637 DAENVRDVMDEKGLRKAPAHSLI 659
           D   VR +M EK + K P  S I
Sbjct: 432 DVFKVRKLMLEKTVTKEPGQSWI 454



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 128/409 (31%), Positives = 213/409 (52%), Gaps = 22/409 (5%)

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
           + Y   I AC +      G  +H R++   +    F+G  L+ MY+  G +  AR V D 
Sbjct: 11  HEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDR 70

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M E SVVSW T+ISGY +     EAL +F  ML++G  P+  ++ +VL +C   + I  G
Sbjct: 71  MPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQG 130

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           + +H L+       ++   ++L+DMY K  ++ EAR VFD + ERDVV+ T++I+GYA  
Sbjct: 131 KQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQK 190

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G    AL LF+ +  EG++ N +T  +L++A S L  L  G+ +HA  +++ L   V ++
Sbjct: 191 GLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQ 250

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
            +LIDMY+KC  +  S +VF    ++  V WNA+L G   +GL  + + LF+ +  E V+
Sbjct: 251 NSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VK 309

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGL---------IDIYSKC 462
           P+  TL ++L   +    + + ++I        F +VV+  + L         ID+  + 
Sbjct: 310 PDSVTLLAVLSGCSHGGLVDEGLDI--------FDTVVKEQSALLHTGHYGCIIDLLGRS 361

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH---GETAVSLFKEM 508
           G LE A  +   +P +     +W  ++    +H +   GE       EM
Sbjct: 362 GRLEKALNLIENMPFESTP-SIWGSLLGACRVHANVHVGELVAQKLLEM 409



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 124/416 (29%), Positives = 211/416 (50%), Gaps = 34/416 (8%)

Query: 33  KQLHAFIITSG--P---LFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           +Q+HA +IT+   P   L T L +  VR  G + + R + D M ERS   + T++  Y+Q
Sbjct: 30  RQVHARMITARYRPAVFLGTRLVTMYVRC-GALDDARNVLDRMPERSVVSWTTMISGYSQ 88

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
                ++L +F+ MLR G   P+ YT   V+ +C+       G  +H  ++ T F+   F
Sbjct: 89  TERHVEALDLFIKMLRAGCI-PNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMF 147

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           VG+ L+ MY     ++ AR+VFD + E  VVS   +ISGY +    +EAL +F  +   G
Sbjct: 148 VGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEG 207

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           ++ +  +  +++ A   L  ++ G+ +H L+    L   +A  N+L+DMY KCG +  +R
Sbjct: 208 MQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSR 267

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VFD M ER VV+W +M+ GY  +G     + LF+ +  E V+P+S+T+ ++LS CS   
Sbjct: 268 RVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGG 326

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETA----LIDMYAKCNLVKLSFQVFARTSKKKTVP-W 382
            +  G  +    +K+      ++ T     +ID+  +   ++ +  +      + T   W
Sbjct: 327 LVDEGLDIFDTVVKEQ---SALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIW 383

Query: 383 NAILAGC-----VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
            ++L  C     VH G      EL  Q L+E +EP +A        Y IL+++  A
Sbjct: 384 GSLLGACRVHANVHVG------ELVAQKLLE-MEPENAG------NYVILSNIYAA 426


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/618 (31%), Positives = 337/618 (54%), Gaps = 6/618 (0%)

Query: 49  LRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           + ++LV  Y   G +++ R +FD M  RS   +N+++  Y+ +  S ++  +F  M + G
Sbjct: 197 VNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEG 256

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
           E   D  T+  ++ AC +    + G  +   +  T F++D FVG  LI MY      + A
Sbjct: 257 E-RCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDA 315

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
            +VF  M + ++++W+ +I+ +  + +  EAL  F  M + G+ P+  + +S+L      
Sbjct: 316 AQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTP 375

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
             +E    IH L+    L       NALV++Y +C S ++AR VFD++   ++++W SMI
Sbjct: 376 SGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMI 435

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
             Y       +AL LF+ MQ +G++P+ +   ++L AC+   + +  + +H    +  L 
Sbjct: 436 GIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLG 495

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
              +V+T+L++MYAK   + ++  +     +++   WN ++ G   +G +R+A+E ++++
Sbjct: 496 GSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKL 555

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
            +E +  +  T  S+L A      L +   IH   +  G  S V V   L ++YSKCGS+
Sbjct: 556 QLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSM 615

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
           E+A +IF  +PI+    V W+ ++  Y  HG  E  + L ++M Q GV+ N +TF S L 
Sbjct: 616 ENARRIFDSMPIRSA--VSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLS 673

Query: 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           +CSH GL+ EG   F+ +  +     + +HY C+VDLLGRAG+L EA   I  MPL+P  
Sbjct: 674 SCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGI 733

Query: 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645
             W +LLGAC +  +++ G++AA  L EL+P N    V+LS +YS    WK+A  +R  M
Sbjct: 734 VTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAM 793

Query: 646 DEKGLRKAPAHSLIEVRN 663
             + ++K P  S I+V+N
Sbjct: 794 ASRRVKKVPGISSIQVKN 811



 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 159/546 (29%), Positives = 268/546 (49%), Gaps = 12/546 (2%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G + +    F ++  R+   +N ++  Y+   +  ++L +F  ML  G   P+  T   V
Sbjct: 6   GSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEG-VAPNAITLVAV 64

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + +C      + GI +H   L  GF  +T V   L+ MY   G +  A+ VF+ M E +V
Sbjct: 65  LNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNV 124

Query: 178 VSWNTLISGY-FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V+WN ++  Y  +    K A+ +F  ML  GV+ +  + ++VL +      +  G+ IH 
Sbjct: 125 VTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHS 184

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            V       ++    ALV+ Y KCGS+ +AR VFD M  R V TW SMI+ Y+++     
Sbjct: 185 CVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGE 244

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A  +FQ MQ EG R + +T  S+L AC +   L+ G+ +     + + E ++ V TALI 
Sbjct: 245 AFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALIT 304

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MYA+C   + + QVF R  +   + W+AI+     +G   +A+  FR M  E + PN  T
Sbjct: 305 MYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVT 364

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
             SLL  +   + L++   IH  +  +G      +   L+++Y +C S + A  +F ++ 
Sbjct: 365 FISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLE 424

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC---SHGGLL 533
           +   +++ W+ +I  Y      + A+ LF+ M Q G+QP+ V F + L AC   SHG   
Sbjct: 425 L--PNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHG--- 479

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
                L +  +E           T +V++  +AG LD A  +++ M  +   A W  L+ 
Sbjct: 480 -RTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITA-WNVLIN 537

Query: 594 ACVIHG 599
              +HG
Sbjct: 538 GYALHG 543



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 143/481 (29%), Positives = 236/481 (49%), Gaps = 38/481 (7%)

Query: 155 MYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
           MY   G +  A   F  +   +VVSWN +IS Y      +EAL +F  ML  GV P+  +
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           +V+VL +CG  +E+  G ++H L       +N     AL++MY KCG++ +A+ VF+ M+
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 275 ERDVVTWTSMINGYALNGDV-RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
           E++VVTW +M+  Y+L G   + A+ LF  M  EGV+ N +T  ++L++      L++G+
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            +H+   +     +V V TAL++ Y KC  +  + +VF     +    WN++++    + 
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
            + +A  +F++M  E    +  T  S+L A      LQ   ++   +    F   + V T
Sbjct: 241 RSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGT 300

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            LI +Y++C S E A ++F    +K  +++ WS II  +  HGH   A+  F+ M Q G+
Sbjct: 301 ALITMYARCRSPEDAAQVFGR--MKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGI 358

Query: 514 QPNEVTFTSALHACSHGGLLDE-----------GLD----LFNFMLENHQTCSRADHYTC 558
            PN VTF S L+  +    L+E           GLD    + N ++  +  C   D    
Sbjct: 359 LPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDART 418

Query: 559 IVDLLG---------------RAGRLDEAYDLIRTMP---LKPTHAVWGALLGACVI--H 598
           + D L                +  R D+A  L RTM    ++P    +  +LGAC I  H
Sbjct: 419 VFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSH 478

Query: 599 G 599
           G
Sbjct: 479 G 479


>gi|224137486|ref|XP_002327138.1| predicted protein [Populus trichocarpa]
 gi|222835453|gb|EEE73888.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 200/592 (33%), Positives = 329/592 (55%), Gaps = 9/592 (1%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           M +R    +N ++   ++NG   D+L++F+ +LR G ++P   T   ++ +C    +   
Sbjct: 1   MLDRDIVSWNALICGCSRNGYDVDALEIFVQLLREG-FSPLQTTLVGLVPSCGRREFVFQ 59

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G ++HG  + TG D+D+ V N L  MY   G+++AA  +F+ + + SVVSWNT+I  Y  
Sbjct: 60  GRSIHGFGIKTGIDLDSQVKNALTYMYAKSGDLEAAELLFEELEDKSVVSWNTMIGAYAG 119

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N +  E+++VF  M++  VE +  +++S+LPA      I    +IH       L  N + 
Sbjct: 120 NGFFNESMLVFKRMVEQKVEVNPVTIMSLLPA-----NIS-PELIHCYAIKTGLINNGSV 173

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
             +LV +Y KCGS   A L++    ++++V+ T++I+ YA  G++   +  F  MQ   +
Sbjct: 174 VTSLVCLYAKCGSTELAELLYWSFPQKNLVSLTAIISSYAEKGNMDLVVECFSRMQQLDM 233

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
           + +S+ + S+L   +   ++  G +LH + +K  L+   +V   LI MY K N ++ +  
Sbjct: 234 KLDSVAMVSILHGITDPSHMSIGIALHGYALKNGLDTHNLVSNGLISMYFKFNDIEAAIS 293

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           +F    +K  + WN++++GCV  G A  A++ F QM +  + P+  T+ SLL   + L  
Sbjct: 294 LFYEMPEKPLISWNSVISGCVQAGRASDAMKFFCQMKMFGLSPDTITVASLLTGCSQLGY 353

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L+    +H Y++R        V T LID+Y+KCGS+  A ++F  I  ++  +  W+ +I
Sbjct: 354 LRLGERLHNYILRNNLEVEDFVGTSLIDMYTKCGSILLAERVFKSI--REPCVATWNTMI 411

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           +GY  +G    A++ + +M + G++P+ +TF   L AC HGGLL EG   F  M E    
Sbjct: 412 SGYSWYGLEHNALNCYSKMREQGLEPDRITFLGVLAACIHGGLLHEGKKHFQIMTEEFGM 471

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
                H  C+V LLGRAG  +EA   I+ M  +P  AVWGALL AC IH  ++LGE  AK
Sbjct: 472 VPNLQHCACMVGLLGRAGLFEEALLFIKNMESEPDSAVWGALLNACCIHQEIKLGECLAK 531

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            L+ L+ +N G YVL+S LY+A  RW DA  +R++M + G       S IEV
Sbjct: 532 KLYLLDYKNCGLYVLMSNLYAATNRWNDAAKMREIMKDIGGDGTSGVSQIEV 583



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 126/506 (24%), Positives = 233/506 (46%), Gaps = 18/506 (3%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRI 65
           P  T LV  LV      + +   + +H F I +G  L + ++++L   Y   G +    +
Sbjct: 39  PLQTTLV-GLVPSCGRREFVFQGRSIHGFGIKTGIDLDSQVKNALTYMYAKSGDLEAAEL 97

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG-EYNPDNYTYPIVIKACTDL 124
           LF+E+ ++S   +NT++  YA NG  ++S+ +F  M+    E NP      +      +L
Sbjct: 98  LFEELEDKSVVSWNTMIGAYAGNGFFNESMLVFKRMVEQKVEVNPVTIMSLLPANISPEL 157

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
                   +H   + TG   +  V   L+ +Y   G  + A  ++ +  + ++VS   +I
Sbjct: 158 --------IHCYAIKTGLINNGSVVTSLVCLYAKCGSTELAELLYWSFPQKNLVSLTAII 209

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           S Y +       +  F  M +  ++ D  ++VS+L        + +G  +H       L 
Sbjct: 210 SSYAEKGNMDLVVECFSRMQQLDMKLDSVAMVSILHGITDPSHMSIGIALHGYALKNGLD 269

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            +    N L+ MY K   +  A  +F  M E+ +++W S+I+G    G   +A+  F  M
Sbjct: 270 THNLVSNGLISMYFKFNDIEAAISLFYEMPEKPLISWNSVISGCVQAGRASDAMKFFCQM 329

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
           +  G+ P+++T+ SLL+ CS L YL+ G  LH + ++ NLE E  V T+LIDMY KC  +
Sbjct: 330 KMFGLSPDTITVASLLTGCSQLGYLRLGERLHNYILRNNLEVEDFVGTSLIDMYTKCGSI 389

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
            L+ +VF    +     WN +++G    GL   A+  + +M  + +EP+  T   +L A 
Sbjct: 390 LLAERVFKSIREPCVATWNTMISGYSWYGLEHNALNCYSKMREQGLEPDRITFLGVLAA- 448

Query: 425 AILADLQQAMNIHCYLI--RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
            I   L      H  ++   +G +  ++    ++ +  + G  E A  +F +    + D 
Sbjct: 449 CIHGGLLHEGKKHFQIMTEEFGMVPNLQHCACMVGLLGRAGLFEEA-LLFIKNMESEPDS 507

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEM 508
            VW  ++    +H   +    L K++
Sbjct: 508 AVWGALLNACCIHQEIKLGECLAKKL 533


>gi|225459473|ref|XP_002284396.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Vitis vinifera]
          Length = 690

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 210/690 (30%), Positives = 340/690 (49%), Gaps = 43/690 (6%)

Query: 14  HLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAYGHVS---NVRILFDE 69
           H ++ +++Q    ++    + LHA II  G        ++L+  Y  +S   + R LFDE
Sbjct: 4   HRIVSVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLFDE 63

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
             ER+   + T++  Y+ +G    +LK ++ ML      P+ + Y  V+KAC  +   + 
Sbjct: 64  TLERNVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDLES 123

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  +HGRV       DT + N L+ MY+  G + +ARKVFD +   S  SWNT+ISGY K
Sbjct: 124 GKLIHGRVFRANLGFDTVLMNTLLDMYVKCGSLSSARKVFDDILCPSSTSWNTMISGYGK 183

Query: 190 NAYAKEALVVF---------DW---------------------MLKSGVEPDCASVVSVL 219
               +EA+ +F          W                     M + G++ D  +    L
Sbjct: 184 EGLMEEAVNLFYQMPEPDTVSWNSIIAGFGCKESLGALRFVCMMHRKGLKLDGFTFSCAL 243

Query: 220 PACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVV 279
             CG  + + M + IH  V     G      +ALVD Y  C  ++EA  +FD  S     
Sbjct: 244 KTCGCFQLLVMVKQIHCYVNKSGFGSCCFTASALVDSYSNCNELDEAIKMFDEYSCCSAS 303

Query: 280 T------WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
                  W SM++GY +N     A+ L   +   G   +S T GS L  C +L   + G 
Sbjct: 304 ILDCLPLWNSMLSGYVVNEQNSAAINLVSQIHSLGAHVDSFTFGSALKVCINLQNFRLGL 363

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            +    +    E + +V + LID+YA    +K + ++F R  +K  V W+++++ C   G
Sbjct: 364 QVQGLAVTSGYELDYVVGSILIDLYANDGKIKDALRLFYRLPEKDIVVWSSLISWCTKMG 423

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
           L      LFR M+   +E +   ++S+L A + L  L     +H + ++ G+ S     T
Sbjct: 424 LNSLVFSLFRDMVNLDIEVDQFIISSVLKACSSLVGLGSGKQVHSFCVKSGYESERITVT 483

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            LID+Y+KCG +E    +F      ++D V ++ II G G +G    AV  F+EM++ G+
Sbjct: 484 SLIDLYAKCGEIEDGLALF--YCTSERDTVCYTGIIMGCGQNGRAMEAVGFFQEMIELGL 541

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
           +PNE+TF   L AC H GL++E   +F +M   ++     +HY CIV+LL +AG   EA 
Sbjct: 542 KPNEITFLGVLSACRHAGLVEEAWTIFKYMKTEYKMEPHIEHYYCIVELLSQAGCFKEAE 601

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633
           +LI  MP +P   +W +LLGAC  H   EL    A+ L    PE+P   V LS +Y+ + 
Sbjct: 602 ELIAEMPFEPDQTIWNSLLGACGTHKKTELVNFIAERLLTTLPEDPSILVTLSNVYATLE 661

Query: 634 RWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            W D+  +R+V+ + G+++A   S I++++
Sbjct: 662 MWDDSRKMREVIKKVGMKEA-GKSWIQIKS 690



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 191/436 (43%), Gaps = 61/436 (13%)

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D   +VSV+  CG  +    GR +H  +    +  ++   N L+ MYV    + +AR +F
Sbjct: 2   DLHRIVSVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLF 61

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           D   ER+V TWT+MI+ Y+ +G    AL  + Q+++ +   PN     ++L AC  +  L
Sbjct: 62  DETLERNVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDL 121

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           + G+ +H    + NL  + ++   L+DMY KC  +  + +VF       +  WN +++G 
Sbjct: 122 ESGKLIHGRVFRANLGFDTVLMNTLLDMYVKCGSLSSARKVFDDILCPSSTSWNTMISGY 181

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ------------------ 431
              GL  +AV LF QM     EP+  + NS++  +     L                   
Sbjct: 182 GKEGLMEEAVNLFYQM----PEPDTVSWNSIIAGFGCKESLGALRFVCMMHRKGLKLDGF 237

Query: 432 ----------------QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
                               IHCY+ + GF S    ++ L+D YS C  L+ A K+F E 
Sbjct: 238 TFSCALKTCGCFQLLVMVKQIHCYVNKSGFGSCCFTASALVDSYSNCNELDEAIKMFDEY 297

Query: 476 PIKDKDIV----VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
                 I+    +W+ +++GY ++     A++L  ++   G   +  TF SAL  C    
Sbjct: 298 SCCSASILDCLPLWNSMLSGYVVNEQNSAAINLVSQIHSLGAHVDSFTFGSALKVC---- 353

Query: 532 LLDEGLDLFNFMLENH-QTCSRADHY-------TCIVDLLGRAGRLDEAYDLIRTMPLKP 583
                ++L NF L    Q  +    Y       + ++DL    G++ +A  L   +P K 
Sbjct: 354 -----INLQNFRLGLQVQGLAVTSGYELDYVVGSILIDLYANDGKIKDALRLFYRLPEKD 408

Query: 584 THAVWGALLGACVIHG 599
              VW +L+  C   G
Sbjct: 409 I-VVWSSLISWCTKMG 423


>gi|449434412|ref|XP_004134990.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g04860-like [Cucumis sativus]
          Length = 704

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 203/636 (31%), Positives = 335/636 (52%), Gaps = 13/636 (2%)

Query: 27  KSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMK 83
           K+ A   Q H FI      F ++ ++ +  Y   G V   + LFD+  E+    +N ++ 
Sbjct: 79  KAEANQLQTH-FIKWGFDQFLYVSTAFLDLYSKLGFVKAAQRLFDDFPEKDVVSWNALIS 137

Query: 84  MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD 143
            Y + G SHD+ K+F+ M R  E++P   T   ++ +C        G ++HG  +  G D
Sbjct: 138 GYTRCGNSHDAFKLFVEMRRR-EFDPCQRTLVSLMPSCGTQQLFVQGKSIHGLGVKAGLD 196

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
           +D+ V N L++MY    ++   + +F  + E SVVSWNT+I  + +N    EA++VF  M
Sbjct: 197 LDSQVKNALVSMYGKCADLDGVKLLFGEITEKSVVSWNTMIGAFGQNGLFSEAMLVFKQM 256

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
           L+  V  +  ++VS+L A         G  IH       L +N++   +LV  YVKCG +
Sbjct: 257 LEESVNANSVTMVSILSA-----NANTG-CIHCYATKIGLVENVSVVTSLVCSYVKCGYI 310

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
             A L++    ++++V  T++I+ YA  GD+ + + L+ ++Q   ++ +++ +  ++   
Sbjct: 311 ELAELIYMSKLKKNLVALTAIISHYAEKGDMGSVVRLYSIVQHLDMKLDAVAMVGIIQGF 370

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
           +   ++  G + H + +K  L  + +V    I MY+K + +   F +F    KK    WN
Sbjct: 371 TYPDHIGIGLAFHGYGVKSGLIIDCLVANGFISMYSKFDNIDAVFSLFQEMHKKTLSSWN 430

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           ++++ C   G +  A+ LF QM +    P+  TL SLL A     +L     +HCY++R 
Sbjct: 431 SVISSCAQAGRSIDAMALFSQMTLSGYGPDSITLASLLSACCQNGNLHFGEILHCYILRN 490

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
                  V T L+D+Y KCG ++ A  +F  +  K+  +  W+ +I+GYG+ G    A+ 
Sbjct: 491 NLDLEGFVGTALVDMYVKCGRMDFAENVFKSM--KEPCLASWNSLISGYGLFGFHNHALL 548

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563
            + EM++ G++PN++TF+  L AC+HGGL++EG   F  M +       + H   +V +L
Sbjct: 549 CYTEMMEKGIKPNKITFSGILAACTHGGLVEEGRKYFKIMKKKFGIVPESQHCASMVGML 608

Query: 564 GRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623
           GRAG  +EA   I+ M   P  AVWGALL AC IH  V+LGE  AK LF     N G +V
Sbjct: 609 GRAGLFEEAIVFIQNMETNPDSAVWGALLSACCIHQEVKLGESVAKKLFFSNCRNGGFFV 668

Query: 624 LLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           L+S LY+A RRW D   +R +M E G       SL+
Sbjct: 669 LMSNLYAASRRWNDVARIRKMMREMGEDGCSGVSLV 704



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 80/149 (53%), Gaps = 15/149 (10%)

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILA-------------DLQQAMNIHCYLIRYGFLS 447
           LFR++L   V+PND+T + L+ A+ + +             +  +A  +  + I++GF  
Sbjct: 37  LFRELLRHRVKPNDSTFSLLIKAFVVSSSTSSFAPSFCSENEKAEANQLQTHFIKWGFDQ 96

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            + VST  +D+YSK G +++A ++F + P  +KD+V W+ +I+GY   G+   A  LF E
Sbjct: 97  FLYVSTAFLDLYSKLGFVKAAQRLFDDFP--EKDVVSWNALISGYTRCGNSHDAFKLFVE 154

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           M +    P + T  S + +C    L  +G
Sbjct: 155 MRRREFDPCQRTLVSLMPSCGTQQLFVQG 183


>gi|297798862|ref|XP_002867315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313151|gb|EFH43574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/552 (35%), Positives = 313/552 (56%), Gaps = 8/552 (1%)

Query: 115 PIVIKACT-DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           P VIKAC+       LG  LH     +G D DT V N LI+MY       AARKVFD M 
Sbjct: 50  PSVIKACSFQQEPFLLGAQLHCLCFKSGADRDTVVSNSLISMYAKLSRAYAARKVFDEML 109

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL-KEIEMGR 232
           +   VS+ ++++ Y ++    EA+ +   M   G  P    V S+L  C  +    ++ R
Sbjct: 110 QRDTVSYCSIVNCYCQDGLLSEAMKLLKEMYFYGFVPKSELVASLLALCTRMGSSSKVAR 169

Query: 233 MIHELV-AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           M+H LV    R+ +++    AL+DMY+K      A  VFD+M  ++ V+WT+MI+G   N
Sbjct: 170 MLHALVLVDERIQESVLLSTALLDMYLKFDDPAAAFHVFDQMELKNEVSWTAMISGCVAN 229

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY-LKRGRSLHAWTIKQNLECEVIV 350
            +    +  F+ MQ E +RPN +T+ S+L AC  L Y L+  + +H ++ +     +  +
Sbjct: 230 YNYEVGIDFFRAMQRENLRPNRVTLLSVLPACVELGYGLRLVKEIHGFSFRHGFHSDDRL 289

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
             A + MY +C  V LS  +F  +  +  V W+++++G   NG   +A+ L  QM  E  
Sbjct: 290 IAAFMTMYCRCGSVSLSRLLFETSKVRDVVMWSSMISGYAENGDCSEAMNLLSQMRKEGS 349

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           EPN  TL +++ A    A L+ A  +H  +++ GF+S + +S  LID+Y+KCGSL +A +
Sbjct: 350 EPNSVTLLAVVSACTHSASLKIASTVHSQILKCGFMSHILLSNALIDMYAKCGSLPAARE 409

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           +F E+   +KD+V WS +I  YG+HGHG  A+ +FK M+++G + + + F + L AC+H 
Sbjct: 410 VFYEL--NEKDLVSWSSMINAYGLHGHGSEALEIFKGMIKAGHEVDGMAFLAVLSACNHA 467

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           GL++E   +F    + H   +  +HY+C ++LLGR G++D+A+++   MP+KP+  +W +
Sbjct: 468 GLVEEAQTIFTQAGKYHMPVT-LEHYSCYINLLGRFGKIDDAFEVTINMPMKPSARIWSS 526

Query: 591 LLGACVIHGNVELG-EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
           LL AC  HG +++  ++ A  L + EP+NP NYVLLSK+++       AE V   M  + 
Sbjct: 527 LLSACETHGRLDVACKIIANELMKSEPDNPANYVLLSKIHTESGNCDAAEEVWKFMQRRQ 586

Query: 650 LRKAPAHSLIEV 661
           L K    S IE+
Sbjct: 587 LNKCYGFSKIEL 598



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 152/525 (28%), Positives = 262/525 (49%), Gaps = 25/525 (4%)

Query: 34  QLHAFIITSGP-LFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNG 89
           QLH     SG    T + +SL+  Y  +S     R +FDEM +R +  Y +++  Y Q+G
Sbjct: 68  QLHCLCFKSGADRDTVVSNSLISMYAKLSRAYAARKVFDEMLQRDTVSYCSIVNCYCQDG 127

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL-AWRKLGIALHGRVLITG-FDMDTF 147
              +++K+   M   G + P +     ++  CT + +  K+   LH  VL+         
Sbjct: 128 LLSEAMKLLKEMYFYG-FVPKSELVASLLALCTRMGSSSKVARMLHALVLVDERIQESVL 186

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           +   L+ MY+ F +  AA  VFD M   + VSW  +ISG   N   +  +  F  M +  
Sbjct: 187 LSTALLDMYLKFDDPAAAFHVFDQMELKNEVSWTAMISGCVANYNYEVGIDFFRAMQREN 246

Query: 208 VEPDCASVVSVLPAC---GY----LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           + P+  +++SVLPAC   GY    +KEI      H   +  RL   IAA+   + MY +C
Sbjct: 247 LRPNRVTLLSVLPACVELGYGLRLVKEIHGFSFRHGFHSDDRL---IAAF---MTMYCRC 300

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           GSV+ +RL+F+    RDVV W+SMI+GYA NGD   A+ L   M+ EG  PNS+T+ +++
Sbjct: 301 GSVSLSRLLFETSKVRDVVMWSSMISGYAENGDCSEAMNLLSQMRKEGSEPNSVTLLAVV 360

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           SAC+    LK   ++H+  +K      +++  ALIDMYAKC  +  + +VF   ++K  V
Sbjct: 361 SACTHSASLKIASTVHSQILKCGFMSHILLSNALIDMYAKCGSLPAAREVFYELNEKDLV 420

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            W++++     +G   +A+E+F+ M+    E +     ++L A      +++A  I    
Sbjct: 421 SWSSMINAYGLHGHGSEALEIFKGMIKAGHEVDGMAFLAVLSACNHAGLVEEAQTIFTQA 480

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
            +Y     +E  +  I++  + G ++ A ++   +P+K     +WS +++    HG  + 
Sbjct: 481 GKYHMPVTLEHYSCYINLLGRFGKIDDAFEVTINMPMK-PSARIWSSLLSACETHGRLDV 539

Query: 501 AVSLF-KEMVQSGV-QPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
           A  +   E+++S    P      S +H  +  G  D   +++ FM
Sbjct: 540 ACKIIANELMKSEPDNPANYVLLSKIH--TESGNCDAAEEVWKFM 582


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 195/624 (31%), Positives = 323/624 (51%), Gaps = 30/624 (4%)

Query: 47  THLRSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR 103
           T + ++L+  Y    + R+   +F +M  R +  +NT++  +AQ      +L++F  M  
Sbjct: 178 TFVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQS 237

Query: 104 LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163
            G  +PD  T   ++ AC  L   + G  LH  +   G   D  +   L+ +Y+  G+V+
Sbjct: 238 SG-LSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVE 296

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
            A  +F+     +VV WN ++  + +     ++  +F  M  +G+ P+  +   +L  C 
Sbjct: 297 TALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCT 356

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
              EI++G  IH L        ++     L+DMY K G + +AR V + + E+DVV+WTS
Sbjct: 357 CTGEIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTS 416

Query: 284 MINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN 343
           MI GY  +   ++AL  F+ MQ  G+ P+++ + S +S C+ +  +++G  +HA      
Sbjct: 417 MIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSG 476

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
              +V +  AL+++YA+C  ++ +F  F     K  + WN +++G   +GL  +A+++F 
Sbjct: 477 YSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFM 536

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
           +M    V+ N  T  S L A A LA+++Q   IH  +I+ G     EV   LI +Y KCG
Sbjct: 537 RMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCG 596

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
           S E A   FSE+   +++ V W+ II     HG G  A+  F +M +             
Sbjct: 597 SFEDAKMEFSEM--SERNEVSWNTIITSCSQHGRGLEALDFFDQMKK------------- 641

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
                      EGL  F  M + +    R DHY C++D+ GRAG+LD A   +  MP+  
Sbjct: 642 -----------EGLSYFKSMSDKYGIRPRPDHYACVIDIFGRAGQLDRAKKFVEEMPIAA 690

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643
              VW  LL AC +H N+E+GE+AAK L ELEP +  +YVLLS  Y+   +W + + VR 
Sbjct: 691 DAMVWRTLLSACKVHKNIEVGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRK 750

Query: 644 VMDEKGLRKAPAHSLIEVRNILTA 667
           +M ++G+RK P  S IEV+N++ A
Sbjct: 751 MMRDRGVRKEPGRSWIEVKNVVHA 774



 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 171/620 (27%), Positives = 305/620 (49%), Gaps = 12/620 (1%)

Query: 34  QLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           ++HA  IT G     +  +L   L    G V   R +F+E+S R +  +  ++  YAQNG
Sbjct: 63  EIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              ++L ++  M R G   P  Y    V+ +CT       G ++H +    GF  +TFVG
Sbjct: 123 LGEEALWLYRQMHRAGVV-PTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVG 181

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N LI +Y+  G  + A +VF  M     V++NTLISG+ + A+ + AL +F+ M  SG+ 
Sbjct: 182 NALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLS 241

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           PDC ++ S+L AC  L +++ G  +H  +    +  +     +L+D+YVKCG V  A ++
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVI 301

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F+  +  +VV W  ++  +    D+  +  LF  MQ  G+RPN  T   +L  C+    +
Sbjct: 302 FNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEI 361

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
             G  +H+ ++K   E ++ V   LIDMY+K   ++ + +V     +K  V W +++AG 
Sbjct: 362 DLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGY 421

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
           V +   + A+  F++M    + P++  L S +   A +  ++Q + IH  +   G+   V
Sbjct: 422 VQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGYSGDV 481

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            +   L+++Y++CG +  A   F EI  KD+  + W+ +++G+   G  E A+ +F  M 
Sbjct: 482 SIWNALVNLYARCGRIREAFSSFEEIEHKDE--ITWNGLVSGFAQSGLHEEALKVFMRMD 539

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           QSGV+ N  TF SAL A ++   + +G  +   +++   +    +    ++ L G+ G  
Sbjct: 540 QSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFE-TEVGNALISLYGKCGSF 598

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629
           ++A      M  +     W  ++ +C  HG    G  A  +  +++ E    +  +S  Y
Sbjct: 599 EDAKMEFSEMSER-NEVSWNTIITSCSQHGR---GLEALDFFDQMKKEGLSYFKSMSDKY 654

Query: 630 SAVRRWKDAENVRDVMDEKG 649
               R      V D+    G
Sbjct: 655 GIRPRPDHYACVIDIFGRAG 674



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 141/311 (45%), Gaps = 33/311 (10%)

Query: 24  AATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNVRILF---DEMSERSSFLYN 79
           A  K++    Q+HA +  SG      + ++LV  Y     +R  F   +E+  +    +N
Sbjct: 457 AGIKAMRQGLQIHARVYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWN 516

Query: 80  TVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLI 139
            ++  +AQ+G   ++LK+F+ M + G    + +T+   + A  +LA  K G  +H RV+ 
Sbjct: 517 GLVSGFAQSGLHEEALKVFMRMDQSG-VKHNVFTFVSALSASANLAEIKQGKQIHARVIK 575

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
           TG   +T VGN LI++Y   G  + A+  F  M E + VSWNT+I+   ++    EAL  
Sbjct: 576 TGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDF 635

Query: 200 FDWMLKSGV--------------EPD-CASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           FD M K G+               PD  A V+ +    G L   +  + + E+     + 
Sbjct: 636 FDQMKKEGLSYFKSMSDKYGIRPRPDHYACVIDIFGRAGQLDRAK--KFVEEMP----IA 689

Query: 245 KNIAAWNAL-----VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
            +   W  L     V   ++ G +    L+   +   D  ++  + N YA+ G   N   
Sbjct: 690 ADAMVWRTLLSACKVHKNIEVGELAAKHLL--ELEPHDSASYVLLSNAYAVTGKWANRDQ 747

Query: 300 LFQLMQFEGVR 310
           + ++M+  GVR
Sbjct: 748 VRKMMRDRGVR 758



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 3/154 (1%)

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
           Q    IH   I  G      V   LID+YSK G +  A ++F E+  +D   V W  +++
Sbjct: 59  QVVPEIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDN--VSWVAMLS 116

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           GY  +G GE A+ L+++M ++GV P     +S L +C+   L  +G  + +        C
Sbjct: 117 GYAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSV-HAQGYKQGFC 175

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
           S       ++ L  R G    A  +   MP + T
Sbjct: 176 SETFVGNALITLYLRCGSFRLAERVFYDMPHRDT 209


>gi|449529626|ref|XP_004171799.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g04860-like [Cucumis sativus]
          Length = 704

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 202/641 (31%), Positives = 335/641 (52%), Gaps = 13/641 (2%)

Query: 23  YAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLY 78
           + +    A   QL    I  G   F ++ ++ +  Y   G V   + LFD+  E+    +
Sbjct: 73  FCSENEKAEANQLQTHFIKWGFDQFLYVSTAFLDLYSKLGFVKAAQRLFDDFPEKDVVSW 132

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
           N ++  Y + G SHD+ K+F+ M R  E++P   T   ++ +C        G ++HG  +
Sbjct: 133 NALISGYTRCGNSHDAFKLFVEMRRR-EFDPCQRTLVSLMPSCGTQQLFVQGKSIHGLGV 191

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
             G D+D+ V N L++MY    ++   + +F  + E SVVSWNT+I  + +N    EA++
Sbjct: 192 KAGLDLDSQVKNALVSMYGKCADLDGVKLLFGEITEKSVVSWNTMIGAFGQNGLFSEAML 251

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           VF  ML+  V  +  ++VS+L A         G  IH       L +N++   +LV  YV
Sbjct: 252 VFKQMLEESVNANSVTMVSILSA-----NANTG-CIHCYATKIGLVENVSVVTSLVCSYV 305

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           KCG +  A L++    ++++V  T++I+ YA  GD+ + + L+ ++Q   ++ +++ +  
Sbjct: 306 KCGYIELAELIYMSKLKKNLVALTAIISHYAEKGDMGSVVRLYSIVQHLDMKLDAVAMVG 365

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           ++   +   ++  G + H + +K  L  + +V    I MY+K + +   F +F    KK 
Sbjct: 366 IIQGFTYPDHIGIGLAFHGYGVKSGLIIDCLVANGFISMYSKFDNIDAVFSLFQEMHKKT 425

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
              WN++++ C   G +  A+ LF QM +    P+  TL SLL A     +L     +HC
Sbjct: 426 LSSWNSVISSCAQAGRSIDAMALFSQMTLSGYGPDSITLASLLSACCQNGNLHFGEILHC 485

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           Y++R        V T L+D+Y KCG ++ A  +F  +  K+  +  W+ +I+GYG+ G  
Sbjct: 486 YILRNNLDLEGFVGTALVDMYVKCGRMDFAENVFKSM--KEPCLASWNSLISGYGLFGFH 543

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
             A+  + EM++ G++PN++TF+  L AC+HGGL++EG   F  M +       + H   
Sbjct: 544 NHALLCYTEMMEKGIKPNKITFSGILAACTHGGLVEEGRKYFKIMKKKFGIVPESQHCAS 603

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
           +V +LGRAG  +EA   I+ M   P  AVWGALL AC IH  V+LGE  AK LF     N
Sbjct: 604 MVGMLGRAGLFEEAIVFIQNMETNPDSAVWGALLSACCIHQEVKLGESVAKKLFFSNCSN 663

Query: 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
            G +VL+S LY+A RRW D   +R +M E G       SL+
Sbjct: 664 GGFFVLMSNLYAASRRWNDVARIRKMMREMGEDGCSGVSLV 704



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 80/149 (53%), Gaps = 15/149 (10%)

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILA-------------DLQQAMNIHCYLIRYGFLS 447
           LFR++L   V+PND+T + L+ A+ + +             +  +A  +  + I++GF  
Sbjct: 37  LFRELLRHRVKPNDSTFSLLIKAFVVSSSTSSFAPSFCSENEKAEANQLQTHFIKWGFDQ 96

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            + VST  +D+YSK G +++A ++F + P  +KD+V W+ +I+GY   G+   A  LF E
Sbjct: 97  FLYVSTAFLDLYSKLGFVKAAQRLFDDFP--EKDVVSWNALISGYTRCGNSHDAFKLFVE 154

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           M +    P + T  S + +C    L  +G
Sbjct: 155 MRRREFDPCQRTLVSLMPSCGTQQLFVQG 183


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 173/443 (39%), Positives = 267/443 (60%), Gaps = 3/443 (0%)

Query: 217 SVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER 276
           + + AC   + +  GR +H  +   R    +     LV MYV+CG++++AR V DRM ER
Sbjct: 47  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 106

Query: 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
            VV+WT+MI+GY+       AL LF  M   G  PN  T+ ++L++CS    + +G+ +H
Sbjct: 107 SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVH 166

Query: 337 AWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR 396
           +  +K N E  + V ++L+DMYAK   ++ + +VF    ++  V   AI++G    GL  
Sbjct: 167 SLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDE 226

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLI 456
           +A++LFRQ+  E ++ N  T  +L+ A + LA L     +H  ++R      V +   LI
Sbjct: 227 EALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLI 286

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
           D+YSKCG L  + ++F  +   ++ +V W+ ++ GYG HG G   +SLFK++    V+P+
Sbjct: 287 DMYSKCGKLLYSRRVFDNM--LERSVVSWNAMLMGYGRHGLGHEVISLFKDL-HKEVKPD 343

Query: 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
            VT  + L  CSHGGL+DEGLD+F+ +++         HY CI+DLLGR+GRL++A +LI
Sbjct: 344 SVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLI 403

Query: 577 RTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWK 636
             MP + T ++WG+LLGAC +H NV +GE+ A+ L E+EPEN GNYV+LS +Y+A   WK
Sbjct: 404 ENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWK 463

Query: 637 DAENVRDVMDEKGLRKAPAHSLI 659
           D   VR +M EK + K P  S I
Sbjct: 464 DVFKVRKLMLEKTVTKEPGQSWI 486



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 128/409 (31%), Positives = 213/409 (52%), Gaps = 22/409 (5%)

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
           + Y   I AC +      G  +H R++   +    F+G  L+ MY+  G +  AR V D 
Sbjct: 43  HEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDR 102

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M E SVVSW T+ISGY +     EAL +F  ML++G  P+  ++ +VL +C   + I  G
Sbjct: 103 MPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQG 162

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           + +H L+       ++   ++L+DMY K  ++ EAR VFD + ERDVV+ T++I+GYA  
Sbjct: 163 KQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQK 222

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G    AL LF+ +  EG++ N +T  +L++A S L  L  G+ +HA  +++ L   V ++
Sbjct: 223 GLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQ 282

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
            +LIDMY+KC  +  S +VF    ++  V WNA+L G   +GL  + + LF+ +  E V+
Sbjct: 283 NSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VK 341

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGL---------IDIYSKC 462
           P+  TL ++L   +    + + ++I        F +VV+  + L         ID+  + 
Sbjct: 342 PDSVTLLAVLSGCSHGGLVDEGLDI--------FDTVVKEQSALLHTGHYGCIIDLLGRS 393

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH---GETAVSLFKEM 508
           G LE A  +   +P +     +W  ++    +H +   GE       EM
Sbjct: 394 GRLEKALNLIENMPFESTP-SIWGSLLGACRVHANVHVGELVAQKLLEM 441



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 120/398 (30%), Positives = 204/398 (51%), Gaps = 28/398 (7%)

Query: 33  KQLHAFIITSG--P---LFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           +Q+HA +IT+   P   L T L +  VR  G + + R + D M ERS   + T++  Y+Q
Sbjct: 62  RQVHARMITARYRPAVFLGTRLVTMYVRC-GALDDARNVLDRMPERSVVSWTTMISGYSQ 120

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
                ++L +F+ MLR G   P+ YT   V+ +C+       G  +H  ++ T F+   F
Sbjct: 121 TERHVEALDLFIKMLRAGCI-PNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMF 179

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           VG+ L+ MY     ++ AR+VFD + E  VVS   +ISGY +    +EAL +F  +   G
Sbjct: 180 VGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEG 239

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           ++ +  +  +++ A   L  ++ G+ +H L+    L   +A  N+L+DMY KCG +  +R
Sbjct: 240 MQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSR 299

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VFD M ER VV+W +M+ GY  +G     + LF+ +  E V+P+S+T+ ++LS CS   
Sbjct: 300 RVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCSHGG 358

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETA----LIDMYAKCNLVKLSFQVFARTSKKKTVP-W 382
            +  G  +    +K+      ++ T     +ID+  +   ++ +  +      + T   W
Sbjct: 359 LVDEGLDIFDTVVKEQ---SALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIW 415

Query: 383 NAILAGC-----VHNGLARKAVELFRQMLVEVVEPNDA 415
            ++L  C     VH G      EL  Q L+E +EP +A
Sbjct: 416 GSLLGACRVHANVHVG------ELVAQKLLE-MEPENA 446


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 198/532 (37%), Positives = 293/532 (55%), Gaps = 37/532 (6%)

Query: 133 LHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
           LHG+VL   +   +  VG  L+ +Y   GE   AR +FD + + +VV +N +I  Y  N 
Sbjct: 40  LHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNH 99

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
             K+AL+V+  M   G  PD  +   VL A      + +G  IH  V    L  N+   N
Sbjct: 100 LYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGN 159

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
            L+ MY KC S+ EA+ V D +  RDVV+W SM++ YA NG   +AL L + M+   ++P
Sbjct: 160 GLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKP 219

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           N  T+ SLL A ++             T   N+            +Y K        ++F
Sbjct: 220 NDCTMASLLPAVTN-------------TTSDNV------------LYVK--------EMF 246

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
            + +KK  + WN ++A  V+N + ++AV L+ QM    VEP+  ++ S+LPAY  L+ L 
Sbjct: 247 LKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALS 306

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               +H +  R   L  + +   LID+Y+KCG L  A  +F+++    +D+V W+ II+ 
Sbjct: 307 LGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQF--RDVVSWTSIISA 364

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           YG  G G  AV++F EM  SG+ P+ + F S L ACSH GLLD+G   FN M E   T  
Sbjct: 365 YGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMAECGIT-P 423

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
           + +H+ C+VDLLGRAG++DEAY  IR MPL+P   VWG LL AC ++ N+ +G +AA  L
Sbjct: 424 KLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKL 483

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
             L PE+ G YVLLS +Y+   RW D   +R +M+ KG++K P  S +E+ +
Sbjct: 484 LMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELND 535



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/487 (27%), Positives = 235/487 (48%), Gaps = 47/487 (9%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF--THLRSSLVRAY---GHVSNVRIL 66
           T  L  +++ QY    ++   K+LH  ++    L     +   L+R Y   G     R +
Sbjct: 20  TEDLCNRILDQYPDINTL---KKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHI 76

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC--TDL 124
           FDE+++++   +N +++ Y  N    D+L ++  M   G + PD YTYP V+KA   +D 
Sbjct: 77  FDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQG-FVPDMYTYPCVLKASSRSDS 135

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
            W  +G+ +HG VL  G D++ +VGN LIAMY     +K A++V D +    VVSWN+++
Sbjct: 136 LW--VGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMV 193

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           S Y +N    +AL +   M    ++P+  ++ S+LPA                       
Sbjct: 194 SVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAV---------------------- 231

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            N  + N L   YVK         +F +++++ V++W  MI  Y  N   + A+ L+  M
Sbjct: 232 TNTTSDNVL---YVK--------EMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQM 280

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
           +  GV P+ ++I S+L A   L  L  GR +H +  ++ L   +++E ALIDMYAKC  +
Sbjct: 281 EANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCL 340

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
           + +  VF +   +  V W +I++     G  R AV +F +M    + P+     S+L A 
Sbjct: 341 RDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAAC 400

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           +    L         +   G    +E    ++D+  + G ++ A+    ++P+ + D  V
Sbjct: 401 SHAGLLDDGRYYFNLMAECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPL-EPDERV 459

Query: 485 WSVIIAG 491
           W  +++ 
Sbjct: 460 WGPLLSA 466


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 185/516 (35%), Positives = 290/516 (56%), Gaps = 12/516 (2%)

Query: 155 MYMNFGEVKAARKVF-DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCA 213
           MY    ++  A  +F D   E +V ++N +ISG+  N + +E    +  M   GV PD  
Sbjct: 1   MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           +    + AC  + EI   + IH L+    L  ++   +ALV+ Y+K G +  A++ F+ +
Sbjct: 61  TFPCAIKACLDVLEI---KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEEL 117

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
             RDVV W +M+NGYA  G     L  F+ M  E V P+  T+  +LS  + +  L  GR
Sbjct: 118 PIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGR 177

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            +H + +K   +  V V  +LIDMY KC  ++ + ++F    +K    WN+I +     G
Sbjct: 178 IIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCG 237

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF------LS 447
                + L  +ML   ++P+  T+ ++LPA + LA L     IH Y+I  G       + 
Sbjct: 238 DHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDID 297

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            V +   +ID+Y+KCGS+  AH +F  +   +KD+  W+++I GYGMHG+G  A+ +F  
Sbjct: 298 DVLLKNAVIDMYAKCGSMRDAHLVFERM--XNKDVASWNIMIMGYGMHGYGNEALEMFSR 355

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M +  ++P+EVTF   L ACSH G + +G +    M   +      +HYTC++D+LGRAG
Sbjct: 356 MCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAG 415

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
           +LDEAY+L  TMP++    VW ALL AC +H +  L EVAA+ +FELEPE+ G+YVL+S 
Sbjct: 416 QLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSN 475

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +Y AV R+++   VR  M ++ +RK P  S IE++N
Sbjct: 476 VYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKN 511



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 125/440 (28%), Positives = 220/440 (50%), Gaps = 12/440 (2%)

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           I  D   E + F +N ++  +  NG   +  + +  M   G   PD +T+P  IKAC D+
Sbjct: 14  IFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEG-VMPDKFTFPCAIKACLDV 72

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
              K    +HG +   G ++D F+G+ L+  Y+ FG ++ A+  F+ +    VV WN ++
Sbjct: 73  LEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMV 129

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
           +GY +    +  L  F  M    V P   +V  +L     + ++  GR+IH         
Sbjct: 130 NGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYD 189

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
             +A  N+L+DMY KC  + +A  +F+ M E+D+ +W S+ + +   GD    L L   M
Sbjct: 190 SGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRM 249

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC------EVIVETALIDMY 358
              G++P+ +T+ ++L ACS L  L  GR +H + I   L        +V+++ A+IDMY
Sbjct: 250 LGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMY 309

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
           AKC  ++ +  VF R   K    WN ++ G   +G   +A+E+F +M    ++P++ T  
Sbjct: 310 AKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFV 369

Query: 419 SLLPAYAILADLQQAMNIHCYL-IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
            +L A +    + Q  N    +  +Y     +E  T +ID+  + G L+ A+++   +PI
Sbjct: 370 GVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPI 429

Query: 478 KDKDIVVWSVIIAGYGMHGH 497
            + + VVW  ++A   +H H
Sbjct: 430 -EANPVVWRALLAACRLHKH 448



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 193/372 (51%), Gaps = 19/372 (5%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           K++H  +   G  L   + S+LV  Y   G + + ++ F+E+  R   L+N ++  YAQ 
Sbjct: 76  KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 135

Query: 89  GASHDSLKMFLGMLRLGEYN--PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           G     L+ F    R+ + +  P  +T   ++     +     G  +HG  +  G+D   
Sbjct: 136 GQFEMVLETF---RRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGV 192

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
            V N LI MY     ++ A ++F+ M E  + SWN++ S + +       L + D ML +
Sbjct: 193 AVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGA 252

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHE--LVAG-GRLGKNIAA---WNALVDMYVKC 260
           G++PD  +V +VLPAC +L  +  GR IH   +V+G G+ GK+I      NA++DMY KC
Sbjct: 253 GIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKC 312

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           GS+ +A LVF+RM  +DV +W  MI GY ++G    AL +F  M    ++P+ +T   +L
Sbjct: 313 GSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVL 372

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVE--TALIDMYAKCNLVKLSFQV-FARTSKK 377
           SACS   ++ +GR+  A  +K   +    +E  T +IDM  +   +  ++++      + 
Sbjct: 373 SACSHAGFVSQGRNFLA-QMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEA 431

Query: 378 KTVPWNAILAGC 389
             V W A+LA C
Sbjct: 432 NPVVWRALLAAC 443


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 195/494 (39%), Positives = 291/494 (58%), Gaps = 11/494 (2%)

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V SWN++I+   ++  + EAL+ F  M K  + P  +S    + AC  L +I  G+  H+
Sbjct: 41  VFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQ 100

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
                    +I   +AL+ MY  CG + +AR VFD + +RD+V+WTSMI GY LNG+  +
Sbjct: 101 QAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALD 160

Query: 297 ALGLFQLM------QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           A+ LF+ +        + +  +S+ + S++SACS +       S+H++ IK+  +  V V
Sbjct: 161 AVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSV 220

Query: 351 ETALIDMYAKCNL--VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV- 407
              L+D YAK     V ++ ++F +   K  V +N+I++    +G++ +A E+FR+++  
Sbjct: 221 GNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKN 280

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           +VV  N  TL+++L A +    L+    IH  +IR G    V V T +ID+Y KCG +E+
Sbjct: 281 KVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVET 340

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A K F  +  K+K++  W+ +IAGYGMHGH   A+ LF  M+ SGV+PN +TF S L AC
Sbjct: 341 ARKAFDRM--KNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAAC 398

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           SH GL  EG   FN M          +HY C+VDLLGRAG L +AYDLI+ M +KP   +
Sbjct: 399 SHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSII 458

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           W +LL AC IH NVEL E++   LFEL+  N G Y+LLS +Y+   RWKD E VR +M  
Sbjct: 459 WSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKN 518

Query: 648 KGLRKAPAHSLIEV 661
           +GL K P  SL+E+
Sbjct: 519 RGLVKPPGFSLLEL 532



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 139/451 (30%), Positives = 238/451 (52%), Gaps = 13/451 (2%)

Query: 62  NVRILFDEMSERSS-FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKA 120
           N+  LF+   +++  F +N+V+   A++G S ++L  F  M +L  Y P   ++P  IKA
Sbjct: 27  NLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLY-PTRSSFPCAIKA 85

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
           C+ L     G   H +  + G+  D FV + LI MY   G+++ ARKVFD + +  +VSW
Sbjct: 86  CSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSW 145

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCA------SVVSVLPACGYLKEIEMGRMI 234
            ++I GY  N  A +A+ +F  +L    + D A       +VSV+ AC  +    +   I
Sbjct: 146 TSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESI 205

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGS--VNEARLVFDRMSERDVVTWTSMINGYALNG 292
           H  V      + ++  N L+D Y K G   V  AR +FD++ ++D V++ S+++ YA +G
Sbjct: 206 HSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSG 265

Query: 293 DVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
               A  +F +L++ + V  N++T+ ++L A S    L+ G+ +H   I+  LE +VIV 
Sbjct: 266 MSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVG 325

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
           T++IDMY KC  V+ + + F R   K    W A++AG   +G A KA+ELF  M+   V 
Sbjct: 326 TSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVR 385

Query: 412 PNDATLNSLLPAYAILA-DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           PN  T  S+L A +     ++     +    R+G    +E    ++D+  + G L+ A+ 
Sbjct: 386 PNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYD 445

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           +   + +K  D ++WS ++A   +H + E A
Sbjct: 446 LIQRMKMK-PDSIIWSSLLAACRIHKNVELA 475



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 175/362 (48%), Gaps = 29/362 (8%)

Query: 269 VFDRMSER-DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           +F+R  ++ DV +W S+I   A +GD   AL  F  M+   + P   +    + ACSSL+
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            +  G+  H        + ++ V +ALI MY+ C  ++ + +VF    K+  V W +++ 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIR 150

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDAT------LNSLLPAYAILADLQQAMNIHCYLI 441
           G   NG A  AV LF+ +LV+  + +DA       L S++ A + +       +IH ++I
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVI 210

Query: 442 RYGFLSVVEVSTGLIDIYSKCGS--LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           + GF   V V   L+D Y+K G   +  A KIF +I   DKD V ++ I++ Y   G   
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIV--DKDRVSYNSIMSVYAQSGMSN 268

Query: 500 TAVSLFKEMVQSGVQP-NEVTFTSALHACSHGGLLDEGL----DLFNFMLENHQTCSRAD 554
            A  +F+ +V++ V   N +T ++ L A SH G L  G      +    LE+        
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVG--- 325

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
             T I+D+  + GR++ A      M  K   + W A++    +HG+      AAK L EL
Sbjct: 326 --TSIIDMYCKCGRVETARKAFDRMKNKNVRS-WTAMIAGYGMHGH------AAKAL-EL 375

Query: 615 EP 616
            P
Sbjct: 376 FP 377



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 146/273 (53%), Gaps = 12/273 (4%)

Query: 32  TKQLHAFIITSG-PLFTHLRSSLVRAY-----GHVSNVRILFDEMSERSSFLYNTVMKMY 85
           T+ +H+F+I  G      + ++L+ AY     G V+  R +FD++ ++    YN++M +Y
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVY 261

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
           AQ+G S+++ ++F  +++      +  T   V+ A +     ++G  +H +V+  G + D
Sbjct: 262 AQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDD 321

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
             VG  +I MY   G V+ ARK FD M   +V SW  +I+GY  + +A +AL +F  M+ 
Sbjct: 322 VIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMID 381

Query: 206 SGVEPDCASVVSVLPACGYLK-EIEMGRMIHELVAGGRLG--KNIAAWNALVDMYVKCGS 262
           SGV P+  + VSVL AC +    +E  R  + +   GR G    +  +  +VD+  + G 
Sbjct: 382 SGVRPNYITFVSVLAACSHAGLHVEGWRWFNAM--KGRFGVEPGLEHYGCMVDLLGRAGF 439

Query: 263 VNEARLVFDRMSER-DVVTWTSMINGYALNGDV 294
           + +A  +  RM  + D + W+S++    ++ +V
Sbjct: 440 LQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNV 472


>gi|449450476|ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 692

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 211/662 (31%), Positives = 334/662 (50%), Gaps = 25/662 (3%)

Query: 7   HTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAY---GHVSN 62
           + LP      + L+ +    K +   K +HA ++ +G   + +L +SLV  Y   G +  
Sbjct: 4   YLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVK 63

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKM-FLGMLRLGEYNPDNYTYPIVIKAC 121
            +++F+ ++ +    +N ++  Y+Q G    S  M     +R     P+ +T+  V  A 
Sbjct: 64  AKLVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAA 123

Query: 122 TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWN 181
           +       G+  H   + T    D FVG+ LI MY   G +  ARKVFD + E + VSW 
Sbjct: 124 SSSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWA 183

Query: 182 TLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG 241
           T+ISGY     A EA  +F  M +     D     SVL A      +  G+ IH L    
Sbjct: 184 TIISGYAMERMAFEAWELFLLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKN 243

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
            L    +  NALV MY KCG +++A   F+   ++D +TW++MI GYA  GD   AL LF
Sbjct: 244 GLLSIASVGNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQAGDSHEALNLF 303

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
             M   G +P+  T   +++ACS +  L+ G+ +H +++K   EC++        + AKC
Sbjct: 304 YNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYECQIYFRKGFDYLKAKC 363

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
             +  + + F    +   V W +                   +M +E + P++ T+ S+L
Sbjct: 364 GSLVDARKGFDYLKEPDIVLWTSC------------------RMQMERIMPHELTMASVL 405

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            A + LA L+Q   IH   I+YGF   V + + L  +Y+KCGSLE  + +F  +P   +D
Sbjct: 406 RACSSLAALEQGKQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMP--SRD 463

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           I+ W+ +I+G   +G G  A+ LF+E+     +P+ VTF + L ACSH GL++ G   F 
Sbjct: 464 IMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFR 523

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            ML+      R +HY C+VD+L RAG+L E  + I +  +     +W  LLGAC  + N 
Sbjct: 524 MMLDEFGIIPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNYRNY 583

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           ELG  A + L EL  +    Y+LLS +Y+A+ R  D E VR +M  +G+ K P  S IE+
Sbjct: 584 ELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLRGVNKEPGCSWIEL 643

Query: 662 RN 663
           ++
Sbjct: 644 KS 645



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 4/126 (3%)

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           M + ++ P   +   LL       DLQ+   IH  L+R G  S V ++  L+++Y+KCGS
Sbjct: 1   MNLYLLPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGS 60

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH-GETAV-SLFKEMVQSGVQPNEVTFTS 522
           +  A  +F  I   +KD+V W+ +I GY   G  G + V  LF+ M      PN  TF+ 
Sbjct: 61  IVKAKLVFESIT--NKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSG 118

Query: 523 ALHACS 528
              A S
Sbjct: 119 VFTAAS 124


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 219/646 (33%), Positives = 337/646 (52%), Gaps = 19/646 (2%)

Query: 27  KSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKM-Y 85
           + + GT+ L A  + +  L T     +    GHV   R +FD M      +  T M    
Sbjct: 67  RRLLGTEVLDADALVANSLLT-----MYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCL 121

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC-TDLAWRKLGIALHGRVLITGF-D 143
            +NGA  ++L +   ML  G   P+ +T      AC     +R  G  + G  + TGF  
Sbjct: 122 TRNGAEQEALVLLGEMLESG-LRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWG 180

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
            D  VG  LI M+   G++ AARKVF+ + E +VV W  +I+ Y +   A +A+ +F  M
Sbjct: 181 TDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGM 240

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG-- 261
           L+ G EPD  ++ S++ AC       +G+ +H LV    L  +      LVDMY K    
Sbjct: 241 LEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQME 300

Query: 262 -SVNEARLVFDRMSERDVVTWTSMINGYA-LNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
            S+  AR VF RM   +V++WT++I+GY    G   NA+ L   M  E + PN LT  SL
Sbjct: 301 QSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSL 360

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           L AC++L     GR +HA  +K ++    +V  AL+ MYA+   ++ + + F +  ++  
Sbjct: 361 LKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERNL 420

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           +  ++ +         R       Q+    V  +  T  SLL A A +    +   +H  
Sbjct: 421 LSTSSDIGE-----TGRSNASWSSQIESMDVGVSTFTFASLLSAAATVGLPTKGQQLHAL 475

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            I+ GF S   +S  L+ +YS+CG L+ A + F E+   D +++ W+ II+    HGH E
Sbjct: 476 SIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEME-DDHNVISWTSIISALAKHGHAE 534

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
            A+SLF +M+ SGV+PN+VT+ + L ACSH GL+ EG + F  M ++H+   R +HY C+
Sbjct: 535 RALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACM 594

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENP 619
           VDLL R+G + EA + I  MP K    VW  LLGAC  + N+E+GE+AA+ + +LEP++P
Sbjct: 595 VDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARHVIDLEPQDP 654

Query: 620 GNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
             YVLLS LY+    W +   +R +M  + L K    S + V N +
Sbjct: 655 APYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTI 700



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 155/330 (46%), Gaps = 32/330 (9%)

Query: 332 GRSLHAWTI-KQNLECEVIVETALIDMYAKCNLVKLSFQVF-ARTSKKKTVPWNAILAGC 389
           GR+LH   +  + L+ + +V  +L+ MY+KC  V+ + +VF      +  V W A+    
Sbjct: 62  GRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCL 121

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATL----NSLLPAYAILADLQQAMNIHCYLIRYGF 445
             NG  ++A+ L  +ML   + PN  TL    ++  P     +     +    + I+ GF
Sbjct: 122 TRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLG---FAIKTGF 178

Query: 446 LSV-VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
               V V   LID++++ G L +A K+F+   + ++ +VVW+++I  Y   G    AV L
Sbjct: 179 WGTDVSVGCALIDMFARNGDLVAARKVFN--GLVERTVVVWTLMITRYVQGGCAGKAVEL 236

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML------ENHQTCSRADHYTC 558
           F  M++ G +P+  T +S + AC+  G    G  L + +L      +   +C   D YT 
Sbjct: 237 FLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTK 296

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLK-PTHAV--WGALLGACVIHGNVELGEVAAKWLFELE 615
           +        +++++ +  R +  + PTH V  W AL+   V  G  E    A + L E+ 
Sbjct: 297 L--------QMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQE--NNAVELLCEML 346

Query: 616 PEN-PGNYVLLSKLYSAVRRWKDAENVRDV 644
            E+   N++  S L  A     D ++ R +
Sbjct: 347 NESIEPNHLTYSSLLKACANLSDQDSGRQI 376


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 186/451 (41%), Positives = 268/451 (59%), Gaps = 3/451 (0%)

Query: 217 SVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER 276
           S+L +C   K IE G+ +H  +    +  N      LV++Y  C S+  A L+FDR+S+R
Sbjct: 6   SLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKR 65

Query: 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
           ++  W  MI GYA NG    A+ L+  M+  G+ P+  T   +L ACS+L  ++ G+ +H
Sbjct: 66  NLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIH 125

Query: 337 AWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR 396
              I+  LE +V V  ALIDMYAKC  V+ + QVF +  ++  V WN++LA    NG   
Sbjct: 126 KDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPD 185

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLI 456
           +++ L R M    ++P + T    + A A    L Q   +H Y  R+GF S  +V T L+
Sbjct: 186 ESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALM 245

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
           D+Y+K GS+  A  +F    +++K +V W+ +I GY MHGH   A+ LFKEM +  V P+
Sbjct: 246 DMYAKSGSVNVARSLFE--LLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-KGKVLPD 302

Query: 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
            +TF   L ACSHGGLL+EG   F  M+ +        HYTC++DLLG  GRL+EAY LI
Sbjct: 303 HITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLI 362

Query: 577 RTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWK 636
             M ++P   VWGALL +C IHGNVE+GE+A + L ELEP++ GNYV+LS +Y+   +W 
Sbjct: 363 MEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWD 422

Query: 637 DAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
               +RD+M  KGL+K+ A S IEV N + A
Sbjct: 423 GVARLRDLMMNKGLKKSIACSWIEVGNKVHA 453



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/405 (29%), Positives = 211/405 (52%), Gaps = 5/405 (1%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           Y  ++++C      + G  LH R+   G   +  +   L+ +Y     +  A  +FD + 
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
           + ++  WN +I GY  N   + A+ ++  M   G+ PD  +   VL AC  L  +E G+ 
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           IH+ V    L  ++    AL+DMY KCG V  AR VFD++ ERDVV W SM+  Y+ NG 
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              +L L ++M F G++P   T    ++A +    L +G+ LH ++ +   E    V+TA
Sbjct: 184 PDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTA 243

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           L+DMYAK   V ++  +F    +K+ V WNA++ G   +G A +A++LF++M  +V+ P+
Sbjct: 244 LMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGKVL-PD 302

Query: 414 DATLNSLLPAYAILADLQQA-MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
             T   +L A +    L +  M+    +  +     V+  T +ID+   CG LE A+K+ 
Sbjct: 303 HITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLI 362

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
            E+ + + D  VW  ++    +HG+ E      +++V+  ++P++
Sbjct: 363 MEMRV-EPDAGVWGALLHSCKIHGNVEMGELALEKLVE--LEPDD 404



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 132/404 (32%), Positives = 215/404 (53%), Gaps = 12/404 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSS-LVRAY---GHVSNVRILFDEMSERS 74
           L+Q     K+I   KQLHA I   G  F  L ++ LV  Y     ++N  +LFD +S+R+
Sbjct: 7   LLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRN 66

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
            FL+N +++ YA NG    ++ ++  M   G   PD +T+P V+KAC+ L+  + G  +H
Sbjct: 67  LFLWNVMIRGYAWNGPYELAISLYYQMRDYG-LVPDKFTFPFVLKACSALSAMEEGKKIH 125

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
             V+ +G + D FVG  LI MY   G V++AR+VFD + E  VV WN++++ Y +N    
Sbjct: 126 KDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPD 185

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           E+L +   M  +G++P   + V  + A      +  G+ +H          N     AL+
Sbjct: 186 ESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALM 245

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           DMY K GSVN AR +F+ + E+ VV+W +MI GYA++G    AL LF+ M+ + V P+ +
Sbjct: 246 DMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGK-VLPDHI 304

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE--TALIDMYAKCNLVKLSFQVFA 372
           T   +L+ACS    L  G+ +H  ++  +      V+  T +ID+   C  ++ ++++  
Sbjct: 305 TFVGVLAACSHGGLLNEGK-MHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIM 363

Query: 373 RTSKKKTVP-WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
               +     W A+L  C  +G      EL  + LVE +EP+D 
Sbjct: 364 EMRVEPDAGVWGALLHSCKIHGNVEMG-ELALEKLVE-LEPDDG 405


>gi|413938252|gb|AFW72803.1| hypothetical protein ZEAMMB73_565260 [Zea mays]
          Length = 709

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 224/669 (33%), Positives = 337/669 (50%), Gaps = 52/669 (7%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSGPLFTH-----LRSSLVRAY---GHVSNVRILFD 68
           + L++  A  +  A T  LHA ++ SG L +        +SL+ AY   G +S    L D
Sbjct: 27  VALLRGAAERRDTALTSALHAALLKSGALRSRQAPLAAANSLLHAYLQCGLLSRALRLLD 86

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN---------PDNYTYPIVIK 119
           EM  R +  Y  ++  + + GA  D+L+ FL ML  G  +         P+ +T   V++
Sbjct: 87  EMPRRDAATYAPLISAHCRLGAPLDALRAFLDMLAWGCSDEEGVDDVVRPNEFTAAAVVQ 146

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           AC      +L   +HG ++  GF  D FV   L+ MY   G+V +AR++   +    VVS
Sbjct: 147 ACGLARDERLARMVHGYLVAGGFCDDPFVLGSLVNMYAKVGDVASARRLLLGLPCRDVVS 206

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           W  ++SG   NA  +EAL VF  ML+ GV P+  +++SV+ AC  +   E+   +H LV 
Sbjct: 207 WTAIVSGCVLNAMLEEALGVFLMMLEDGVLPNNVTMLSVIQACALMGASELFGPVHALVV 266

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
              L  + +  N+L+ MY K G V EA  +F                G+ L         
Sbjct: 267 LLELEHDASVVNSLIMMYAKNGFVEEAIRLF---------------KGFYL--------- 302

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359
                +   V  N   + ++L  C+    +K G  LHA TIK      + VE +L+ MYA
Sbjct: 303 -----KTGSVCSNEDVLAAVLYGCTISGSVKNGEGLHAHTIKMGAFPSISVENSLMGMYA 357

Query: 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV---VEPNDAT 416
           +   +  +  VF     K  V WN I++         +A+++F  +       + P+  T
Sbjct: 358 RFEQIDAALLVFEGMEVKDIVSWNTIISCLAKTDRVNEAMDIFSVLHAAAGGGLAPDFVT 417

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           + S+L A +    L Q   +H Y+++ GF+  V +   LI +Y+K G ++ A  IF  + 
Sbjct: 418 VLSMLQACSNAGLLHQGQMLHGYVMKSGFVYDVSICNALISMYAKLGRIDFAEMIFERMD 477

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV-QPNEVTFTSALHACSHGGLLDE 535
           I  KD+V W+ +I  YGMHG G +A+ +F ++  +G   PN +TF S + ACSH GL+ E
Sbjct: 478 I--KDLVSWNSMINAYGMHGDGHSALRVFHQLKDAGTPAPNAITFVSVISACSHSGLVSE 535

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           G   F  M  +H      DHY C+VDLLGR+GR  EA   IR MP++P   +WG LL AC
Sbjct: 536 GHKCFESMGRDHGIEPSMDHYACVVDLLGRSGRFAEAEQFIRDMPVRPDSTIWGPLLAAC 595

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
            +HGNV+L E AAK L  LEPE+    V LS  Y++V RW+DA  +R  M   GLRK   
Sbjct: 596 QLHGNVDLAEKAAKELSALEPESDIWRVSLSNTYASVGRWRDAAKIRSEMRRVGLRKETG 655

Query: 656 HSLIEVRNI 664
            S ++V  +
Sbjct: 656 WSFVDVGGV 664


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 228/680 (33%), Positives = 354/680 (52%), Gaps = 30/680 (4%)

Query: 7   HTLPKTTHLVI---------KLVQQYAATKSIAGTKQLHAFIITSGPLFTH--LRSSLVR 55
           H  P T HLV+         KL+   A    +   + LH  ++ S  L T   + +SL+ 
Sbjct: 25  HLNPLTAHLVLSSDHSCDAAKLLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLT 84

Query: 56  AY---GHVSNVRILFDEMSERSSFLYNTVM-KMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
            Y   G V   R +FD+M      +  T M    A+NGA  +SL++   ML L    P+ 
Sbjct: 85  MYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLARNGAERESLRLLGEMLEL-GLRPNA 143

Query: 112 YTYPIVIKAC-TDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVF 169
           +T     +AC     +R  G  + G VL TGF   D  VG  LI M+   G++ AA++VF
Sbjct: 144 FTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVF 203

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           D + E + V W  LI+ Y +   A + + +F  ML  G EPD  S+ S++ AC  L  + 
Sbjct: 204 DGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVR 263

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCG---SVNEARLVFDRMSERDVVTWTSMIN 286
           +G+ +H +     L  +      LVDMY K     S+  AR VF  M   +V++WT++I+
Sbjct: 264 LGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALIS 323

Query: 287 GYALNG-DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           GY  +G    N + LF+ M  E +RPN +T  +LL AC++L     GR +HA  +K ++ 
Sbjct: 324 GYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIA 383

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
              +V  AL+ MYA+   ++ + + F +  +   +  +  +    +N      +E     
Sbjct: 384 HVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCSSKIEGMDDG 443

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
           +      +  T  SLL A A +  L +   +H   ++ GF S   +S  L+ +Y++CG L
Sbjct: 444 V------STFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYL 497

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
           E A + F E+  KD +++ W+ II+G   HG+ + A+S+F +M+ +GV+PN+VT+ + L 
Sbjct: 498 EDACRAFDEM--KDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLS 555

Query: 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           ACSH GL+ EG + F  M ++H    R +HY CIVDLL R+G ++EA   I  MP K   
Sbjct: 556 ACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADA 615

Query: 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645
            VW  LL AC  +GN E+GE+AA  +  LEP +P  YVLLS LY+    W +   +R +M
Sbjct: 616 LVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLM 675

Query: 646 DEKGLRKAPAHSLIEVRNIL 665
            +K L K    S ++V N +
Sbjct: 676 RDKNLSKETGLSWMDVGNTI 695


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 187/499 (37%), Positives = 293/499 (58%), Gaps = 4/499 (0%)

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +FD +    +  WNT+I G+  ++  +  LV +  +   GV PD  +   +L A   L+ 
Sbjct: 60  LFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN 119

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
               +    +V  G L  +    N+LV  +  CG V+ +R +F   +++DVV+WT++ING
Sbjct: 120 ENPFQFYAHIVKFG-LDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALING 178

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ-NLEC 346
              NG    AL  F  M+  GV  + +TI S+L A + L  +  GR +H + ++   +  
Sbjct: 179 CLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIW 238

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
           +V V +AL+DMY+KC     + +VF     +  V W A++AG V     ++A+++F++M+
Sbjct: 239 DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI 298

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
           +E +EPN +T+ S L A A L  L Q   +H Y+ R       ++ T L+D+YSKCG ++
Sbjct: 299 IEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVD 358

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
            A  +F ++P KD  +  W+ +I G  M G   ++++LF +M++S VQPN VTF   L A
Sbjct: 359 EALLVFEKLPAKD--VYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSA 416

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           C+HGGL+DEGL+LF  M+ +++     DHY C+VDLLGRAGRL+EA   I +MP++PT  
Sbjct: 417 CAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPG 476

Query: 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646
           VWGAL   C+IH   ELGE     L +L+P + G Y+LL+ LYS  ++W+ A NVR +M 
Sbjct: 477 VWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMK 536

Query: 647 EKGLRKAPAHSLIEVRNIL 665
            KG+ K+P  S IEV  ++
Sbjct: 537 GKGVDKSPGCSWIEVNGVI 555



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 159/514 (30%), Positives = 262/514 (50%), Gaps = 13/514 (2%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVR-AYGHVSNVRIL 66
           +PK   L   ++  +    +    KQ  + +ITSG    T   S ++R A   +    +L
Sbjct: 1   MPKLATLRHSILCCFHKCGTFDHLKQTTSILITSGLAHHTFFLSDILRSATKDLGYTLLL 60

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN--PDNYTYPIVIKACTDL 124
           FD ++    FL+NT+++ ++   AS     + +   RL  +   PD +T+P+++KA + L
Sbjct: 61  FDRLATPYIFLWNTIIRGFS---ASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKL 117

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
              +     +  ++  G D D FV N L++ + + G V  +R++F    +  VVSW  LI
Sbjct: 118 R-NENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALI 176

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-VAGGRL 243
           +G  +N  A EAL  F  M  SGVE D  ++VSVL A   L+++  GR +H   V  GR+
Sbjct: 177 NGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRV 236

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
             ++   +ALVDMY KCG  ++A  VF+ M  R++V+W ++I GY      + AL +FQ 
Sbjct: 237 IWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQE 296

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M  EG+ PN  T+ S L+AC+ L  L +GR LH +  +  L     + TAL+DMY+KC  
Sbjct: 297 MIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGC 356

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           V  +  VF +   K   PW A++ G    G A  ++ LF QM+   V+PN  T   +L A
Sbjct: 357 VDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSA 416

Query: 424 YAILADLQQAMNIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
            A    + + + +   +I  Y     V+    ++D+  + G LE A K    +P++    
Sbjct: 417 CAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTP- 475

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
            VW  + +G  +H   E    +   +++  +QP+
Sbjct: 476 GVWGALFSGCMIHKAFELGEHIGNHLIK--LQPH 507



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/406 (33%), Positives = 202/406 (49%), Gaps = 22/406 (5%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAYGHVSN 62
           P  HT P       KL  +           Q +A I+  G  F   +++SLV A+ H   
Sbjct: 102 PDRHTFPLLLKAFSKLRNE--------NPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGY 153

Query: 63  V---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           V   R LF E +++    +  ++    +NG + ++L+ F+ M R      D  T   V+ 
Sbjct: 154 VDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEM-RSSGVEVDEVTIVSVLC 212

Query: 120 ACTDLAWRKLGIALHGRVLITGFDM-DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
           A   L     G  +HG  + +G  + D +VG+ L+ MY   G    A KVF+ M   ++V
Sbjct: 213 AAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLV 272

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           SW  LI+GY +    KEAL VF  M+  G+EP+ ++V S L AC  L  ++ GR +HE V
Sbjct: 273 SWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYV 332

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
              +LG N     ALVDMY KCG V+EA LVF+++  +DV  WT+MING A+ GD  ++L
Sbjct: 333 DRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSL 392

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI-KQNLECEVIVETALIDM 357
            LF  M    V+PN +T   +LSAC+    +  G  L    I    LE  V     ++D+
Sbjct: 393 NLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDL 452

Query: 358 YAKCNLVKLSFQVFARTSKKKTVP--WNAILAGCVHNGLARKAVEL 401
             +   ++ + + F  +   +  P  W A+ +GC    +  KA EL
Sbjct: 453 LGRAGRLEEAIK-FIESMPMEPTPGVWGALFSGC----MIHKAFEL 493



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 183/334 (54%), Gaps = 6/334 (1%)

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           L+FDR++   +  W ++I G++ +   +  L  +  ++  GV P+  T   LL A S L 
Sbjct: 59  LLFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLR 118

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
             +     +A  +K  L+ +  V+ +L+  +A C  V  S ++F  T+KK  V W A++ 
Sbjct: 119 N-ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALIN 177

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG-FL 446
           GC+ NG A +A+E F +M    VE ++ T+ S+L A A+L D+     +H + +  G  +
Sbjct: 178 GCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVI 237

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
             V V + L+D+YSKCG  + A K+F+E+P   +++V W  +IAGY      + A+ +F+
Sbjct: 238 WDVYVGSALVDMYSKCGYCDDAVKVFNEMPT--RNLVSWGALIAGYVQCNRYKEALKVFQ 295

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           EM+  G++PN+ T TSAL AC+  G LD+G  L  + ++  +    +   T +VD+  + 
Sbjct: 296 EMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEY-VDRSKLGLNSKLGTALVDMYSKC 354

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           G +DEA  +   +P K  +  W A++    + G+
Sbjct: 355 GCVDEALLVFEKLPAKDVYP-WTAMINGLAMRGD 387


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 195/658 (29%), Positives = 339/658 (51%), Gaps = 8/658 (1%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH---VSNVRI 65
           P  T   + L++  +A + ++   Q+HA  + +G  +     S+LV  YG    + +   
Sbjct: 147 PDRTTFAV-LLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALC 205

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
            F  M ER+   +   +    QN      L++F+ M RLG       +Y    ++C  ++
Sbjct: 206 FFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLG-LGVSQPSYASAFRSCAAMS 264

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
               G  LH   +   F  D  VG  ++ +Y     +  AR+ F  +  H+V + N ++ 
Sbjct: 265 CLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMV 324

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           G  +     EA+ +F +M++S +  D  S+  V  AC   K    G+ +H L        
Sbjct: 325 GLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDV 384

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           +I   NA++D+Y KC ++ EA L+F  M ++D V+W ++I     NG   + +  F  M 
Sbjct: 385 DICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEML 444

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
             G++P+  T GS+L AC++L  L+ G  +H   IK  L  +  V + ++DMY KC ++ 
Sbjct: 445 RFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIID 504

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + ++  R   ++ V WNAIL+G   N  + +A + F +ML   ++P+  T  ++L   A
Sbjct: 505 EAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCA 564

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            LA ++    IH  +I+   L    +S+ L+D+Y+KCG +  +  +F +  ++ +D V W
Sbjct: 565 NLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEK--VEKRDFVSW 622

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I GY +HG G  A+ +F+ M +  V PN  TF + L ACSH GL D+G   F+ M  
Sbjct: 623 NAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTT 682

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
           +++   + +H+ C+VD+LGR+    EA   I +MP +    +W  LL  C I  +VE+ E
Sbjct: 683 HYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAE 742

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +AA  +  L+P++   Y+LLS +Y+   +W D    R ++ +  L+K P  S IEV++
Sbjct: 743 LAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQS 800



 Score =  246 bits (627), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 153/573 (26%), Positives = 279/573 (48%), Gaps = 15/573 (2%)

Query: 51  SSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++++ AY H  ++     LFD M +     +N ++  Y Q G   +S+ +F+ M R G  
Sbjct: 87  NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRG-V 145

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
           +PD  T+ +++K+C+ L    LG+ +H   + TG ++D   G+ L+ MY     +  A  
Sbjct: 146 SPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALC 205

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
            F  M E + VSW   I+G  +N      L +F  M + G+     S  S   +C  +  
Sbjct: 206 FFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSC 265

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +  GR +H      +   +     A+VD+Y K  S+ +AR  F  +    V T  +M+ G
Sbjct: 266 LNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG 325

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
               G    A+GLFQ M    +R + +++  + SAC+      +G+ +H   IK   + +
Sbjct: 326 LVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVD 385

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           + V  A++D+Y KC  +  ++ +F    +K +V WNAI+A    NG     +  F +ML 
Sbjct: 386 ICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR 445

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
             ++P+D T  S+L A A L  L+  + +H  +I+ G  S   V++ ++D+Y KCG ++ 
Sbjct: 446 FGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDE 505

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A K+     I  + +V W+ I++G+ ++   E A   F EM+  G++P+  TF + L  C
Sbjct: 506 AQKLHDR--IGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTC 563

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           ++   ++ G  +   +++        D Y  + +VD+  + G + ++  L+     K   
Sbjct: 564 ANLATIELGKQIHGQIIKQEML---DDEYISSTLVDMYAKCGDMPDSL-LVFEKVEKRDF 619

Query: 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
             W A++    +HG   LG  A +    ++ EN
Sbjct: 620 VSWNAMICGYALHG---LGVEALRMFERMQKEN 649



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 160/565 (28%), Positives = 263/565 (46%), Gaps = 72/565 (12%)

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHG---RVLITGFDMDTFVGNCLIAMYM-------- 157
           P   T+  V ++C   A R+   A      R++++GF  + FV NCL+ MY         
Sbjct: 13  PARVTFSRVFQSCAQ-AGREALAAGRAAHARMVVSGFVPNAFVSNCLLQMYARCAGAACA 71

Query: 158 -----------------------NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
                                  + G++  A  +FD M +  VVSWN L+SGY +    +
Sbjct: 72  RRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQ 131

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           E++ +F  M + GV PD  +   +L +C  L+E+ +G  +H L     L  ++   +ALV
Sbjct: 132 ESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALV 191

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           DMY KC S+++A   F  M ER+ V+W + I G   N      L LF  MQ  G+  +  
Sbjct: 192 DMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQP 251

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           +  S   +C+++  L  GR LHA  IK     + +V TA++D+YAK N +  + + F   
Sbjct: 252 SYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGL 311

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
                   NA++ G V  GL  +A+ LF+ M+   +  +  +L+ +  A A      Q  
Sbjct: 312 PNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQ 371

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            +HC  I+ GF   + V+  ++D+Y KC +L  A+ IF    +K KD V W+ IIA    
Sbjct: 372 QVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQ--GMKQKDSVSWNAIIAALEQ 429

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           +GH +  +  F EM++ G++P++ T+ S L AC+    L+ GL + + ++++    S A 
Sbjct: 430 NGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLG-SDAF 488

Query: 555 HYTCIVDLLGRAGRLDEAYDL----------------------------------IRTMP 580
             + +VD+  + G +DEA  L                                  +  M 
Sbjct: 489 VASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMG 548

Query: 581 LKPTHAVWGALLGACVIHGNVELGE 605
           LKP H  +  +L  C     +ELG+
Sbjct: 549 LKPDHFTFATVLDTCANLATIELGK 573


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 210/633 (33%), Positives = 341/633 (53%), Gaps = 38/633 (6%)

Query: 34  QLHAFIITSGPLFT-HLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASH 92
           +L   +I S    T H+R+      G V++   LF  M  RS+  YN ++  Y+ NG   
Sbjct: 33  RLEPEVIRSNKAITAHMRA------GRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLP 86

Query: 93  DSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCL 152
            +  +F  + R     PDNY+Y  ++ A    +       L   + +     D+   N +
Sbjct: 87  LAASLFRAIPR-----PDNYSYNTLLHALAVSSSLADARGLFDEMPVR----DSVTYNVM 137

Query: 153 IAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDC 212
           I+ + N G V  AR  FD   E   VSWN +++ Y +N   +EA  +F+    S  E D 
Sbjct: 138 ISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFN----SRTEWDV 193

Query: 213 ASVVSVLPACGYLKEIEMGRMIHELVAGGRL-GKNIAAWNALVDMYVKCGSVNEARLVFD 271
            S  +++   GY   ++ G+M        R+ G+++ +WN +V  Y + G + EAR +FD
Sbjct: 194 ISWNALM--SGY---VQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD 248

Query: 272 RMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKR 331
               RDV TWT++++GYA NG +  A  +F  M       N+++  ++++A     Y++R
Sbjct: 249 AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP----ERNAVSWNAMVAA-----YIQR 299

Query: 332 GRSLHAWTIKQNLECEVIVE-TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
                A  +   + C  +     ++  YA+  +++ +  VF    +K  V W A+LA   
Sbjct: 300 RMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYS 359

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
             G + + ++LF +M       N +    +L   A +A L+  M +H  LIR G+     
Sbjct: 360 QGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCF 419

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           V   L+ +Y KCG++E A   F E+  +++D+V W+ +IAGY  HG G+ A+ +F  M  
Sbjct: 420 VGNALLAMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHGFGKEALEIFDMMRT 477

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
           +  +P+++T    L ACSH GL+++G+  F  M  +    ++ +HYTC++DLLGRAGRL 
Sbjct: 478 TSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLA 537

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630
           EA+DL++ MP +P   +WGALLGA  IH N ELG  AA+ +FELEPEN G YVLLS +Y+
Sbjct: 538 EAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYA 597

Query: 631 AVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +  +W+DA  +R +M+E+G++K P  S IEV+N
Sbjct: 598 SSGKWRDARKMRVMMEERGVKKVPGFSWIEVQN 630


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 195/658 (29%), Positives = 339/658 (51%), Gaps = 8/658 (1%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH---VSNVRI 65
           P  T   + L++  +A + ++   Q+HA  + +G  +     S+LV  YG    + +   
Sbjct: 147 PDRTTFAV-LLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALC 205

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
            F  M ER+   +   +    QN      L++F+ M RLG       +Y    ++C  ++
Sbjct: 206 FFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLG-LGVSQPSYASAFRSCAAMS 264

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
               G  LH   +   F  D  VG  ++ +Y     +  AR+ F  +  H+V + N ++ 
Sbjct: 265 CLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMV 324

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           G  +     EA+ +F +M++S +  D  S+  V  AC   K    G+ +H L        
Sbjct: 325 GLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDV 384

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           +I   NA++D+Y KC ++ EA L+F  M ++D V+W ++I     NG   + +  F  M 
Sbjct: 385 DICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEML 444

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
             G++P+  T GS+L AC++L  L+ G  +H   IK  L  +  V + ++DMY KC ++ 
Sbjct: 445 RFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIID 504

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + ++  R   ++ V WNAIL+G   N  + +A + F +ML   ++P+  T  ++L   A
Sbjct: 505 EAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCA 564

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            LA ++    IH  +I+   L    +S+ L+D+Y+KCG +  +  +F +  ++ +D V W
Sbjct: 565 NLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEK--VEKRDFVSW 622

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I GY +HG G  A+ +F+ M +  V PN  TF + L ACSH GL D+G   F+ M  
Sbjct: 623 NAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTT 682

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
           +++   + +H+ C+VD+LGR+    EA   I +MP +    +W  LL  C I  +VE+ E
Sbjct: 683 HYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAE 742

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +AA  +  L+P++   Y+LLS +Y+   +W D    R ++ +  L+K P  S IEV++
Sbjct: 743 LAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQS 800



 Score =  246 bits (627), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 153/573 (26%), Positives = 279/573 (48%), Gaps = 15/573 (2%)

Query: 51  SSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++++ AY H  ++     LFD M +     +N ++  Y Q G   +S+ +F+ M R G  
Sbjct: 87  NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRG-V 145

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
           +PD  T+ +++K+C+ L    LG+ +H   + TG ++D   G+ L+ MY     +  A  
Sbjct: 146 SPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALC 205

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
            F  M E + VSW   I+G  +N      L +F  M + G+     S  S   +C  +  
Sbjct: 206 FFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSC 265

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +  GR +H      +   +     A+VD+Y K  S+ +AR  F  +    V T  +M+ G
Sbjct: 266 LNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG 325

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
               G    A+GLFQ M    +R + +++  + SAC+      +G+ +H   IK   + +
Sbjct: 326 LVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVD 385

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           + V  A++D+Y KC  +  ++ +F    +K +V WNAI+A    NG     +  F +ML 
Sbjct: 386 ICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR 445

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
             ++P+D T  S+L A A L  L+  + +H  +I+ G  S   V++ ++D+Y KCG ++ 
Sbjct: 446 FGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDE 505

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A K+     I  + +V W+ I++G+ ++   E A   F EM+  G++P+  TF + L  C
Sbjct: 506 AQKLHDR--IGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTC 563

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           ++   ++ G  +   +++        D Y  + +VD+  + G + ++  L+     K   
Sbjct: 564 ANLATIELGKQIHGQIIKQEML---DDEYISSTLVDMYAKCGDMPDSL-LVFEKVEKRDF 619

Query: 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
             W A++    +HG   LG  A +    ++ EN
Sbjct: 620 VSWNAMICGYALHG---LGVEALRMFERMQKEN 649



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 160/565 (28%), Positives = 262/565 (46%), Gaps = 72/565 (12%)

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHG---RVLITGFDMDTFVGNCLIAMYM-------- 157
           P   T+  V ++C   A R+   A      R++++GF    FV NCL+ MY         
Sbjct: 13  PARVTFSRVFQSCAQ-AGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAACA 71

Query: 158 -----------------------NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
                                  + G++  A  +FD M +  VVSWN L+SGY +    +
Sbjct: 72  RRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQ 131

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           E++ +F  M + GV PD  +   +L +C  L+E+ +G  +H L     L  ++   +ALV
Sbjct: 132 ESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALV 191

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           DMY KC S+++A   F  M ER+ V+W + I G   N      L LF  MQ  G+  +  
Sbjct: 192 DMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQP 251

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           +  S   +C+++  L  GR LHA  IK     + +V TA++D+YAK N +  + + F   
Sbjct: 252 SYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGL 311

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
                   NA++ G V  GL  +A+ LF+ M+   +  +  +L+ +  A A      Q  
Sbjct: 312 PNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQ 371

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            +HC  I+ GF   + V+  ++D+Y KC +L  A+ IF    +K KD V W+ IIA    
Sbjct: 372 QVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQ--GMKQKDSVSWNAIIAALEQ 429

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           +GH +  +  F EM++ G++P++ T+ S L AC+    L+ GL + + ++++    S A 
Sbjct: 430 NGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLG-SDAF 488

Query: 555 HYTCIVDLLGRAGRLDEAYDL----------------------------------IRTMP 580
             + +VD+  + G +DEA  L                                  +  M 
Sbjct: 489 VASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMG 548

Query: 581 LKPTHAVWGALLGACVIHGNVELGE 605
           LKP H  +  +L  C     +ELG+
Sbjct: 549 LKPDHFTFATVLDTCANLATIELGK 573


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  345 bits (884), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 210/633 (33%), Positives = 341/633 (53%), Gaps = 38/633 (6%)

Query: 34  QLHAFIITSGPLFT-HLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASH 92
           +L   +I S    T H+R+      G V++   LF  M  RS+  YN ++  Y+ NG   
Sbjct: 33  RLEPEVIRSNKAITAHMRA------GRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLP 86

Query: 93  DSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCL 152
            +  +F  + R     PDNY+Y  ++ A    +       L   + +     D+   N +
Sbjct: 87  LAASLFRAIPR-----PDNYSYNTLLHALAVSSSLADARGLFDEMPVR----DSVTYNVM 137

Query: 153 IAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDC 212
           I+ + N G V  AR  FD   E   VSWN +++ Y +N   +EA  +F+    S  E D 
Sbjct: 138 ISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFN----SRTEWDA 193

Query: 213 ASVVSVLPACGYLKEIEMGRMIHELVAGGRL-GKNIAAWNALVDMYVKCGSVNEARLVFD 271
            S  +++   GY   ++ G+M        R+ G+++ +WN +V  Y + G + EAR +FD
Sbjct: 194 ISWNALM--SGY---VQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD 248

Query: 272 RMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKR 331
               RDV TWT++++GYA NG +  A  +F  M       N+++  ++++A     Y++R
Sbjct: 249 AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP----ERNAVSWNAMVAA-----YIQR 299

Query: 332 GRSLHAWTIKQNLECEVIVE-TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
                A  +   + C  +     ++  YA+  +++ +  VF    +K  V W A+LA   
Sbjct: 300 RMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYS 359

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
             G + + ++LF +M       N +    +L   A +A L+  M +H  LIR G+     
Sbjct: 360 QGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCF 419

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           V   L+ +Y KCG++E A   F E+  +++D+V W+ +IAGY  HG G+ A+ +F  M  
Sbjct: 420 VGNALLAMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHGFGKEALEIFDMMRT 477

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
           +  +P+++T    L ACSH GL+++G+  F  M  +    ++ +HYTC++DLLGRAGRL 
Sbjct: 478 TSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLA 537

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630
           EA+DL++ MP +P   +WGALLGA  IH N ELG  AA+ +FELEPEN G YVLLS +Y+
Sbjct: 538 EAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYA 597

Query: 631 AVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +  +W+DA  +R +M+E+G++K P  S IEV+N
Sbjct: 598 SSGKWRDARKMRVMMEERGVKKVPGFSWIEVQN 630


>gi|302801269|ref|XP_002982391.1| hypothetical protein SELMODRAFT_116290 [Selaginella moellendorffii]
 gi|300149983|gb|EFJ16636.1| hypothetical protein SELMODRAFT_116290 [Selaginella moellendorffii]
          Length = 779

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 203/608 (33%), Positives = 326/608 (53%), Gaps = 14/608 (2%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+H +++ +G  L T L ++LV  Y   G V    ++  EM +R    +N ++  YAQ+
Sbjct: 177 RQVHGYVLEAGMSLDTSLGNALVDMYCKTGGVDEADVVLREMPKRDVISWNIMISGYAQS 236

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   + L+    M + G  +P   TY  ++ AC+       G ++H  V+  G D D  V
Sbjct: 237 GDCKEGLRCLWRMQQDG-LSPTKVTYATLLNACSSEEDLGEGKSIHRSVVDMGLDRDEVV 295

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            + L+ MY   G ++  ++    + E + ++WNT+I  Y + +   +AL  F  M   GV
Sbjct: 296 KSFLLGMYGKCGSLEDVKRSSCEVHERNTIAWNTIIGAYARYSDHFQALRSFQQMQLEGV 355

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG-KNIAAWNALVDMYVKCGSVNEAR 267
           + D  + V +L  C     +  G ++H+ ++  +LG ++I   N+L  MY KCGS++ AR
Sbjct: 356 KADAVTFVLMLGTCSSPAHLAQGILLHDWIS--QLGFESIIVHNSLTAMYAKCGSLDAAR 413

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +F+ M  R+ V+W S+++    +G   +A   FQ M+ EG RP+ +T  S+L AC+   
Sbjct: 414 KMFEEMPSRNSVSWNSLMSAAIQHGCHADAHKFFQRMKLEGSRPDEVTCISMLDACTKQA 473

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
             K G S+H   ++   +    V  ALI MYAK    + +  VF   +++ TV WN ILA
Sbjct: 474 NAKEGSSIHQMVVESGFDKRTGVANALIFMYAKLGDHEAARNVFDAMAERNTVSWNTILA 533

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
             V  GL R AVE+F +M  +V       + +L     +   L     IH Y++ +GF +
Sbjct: 534 AYVEKGLNRDAVEMFWKM--DVARDKVTYVAALDACSGLAGGLAHGKLIHGYMLDHGFSN 591

Query: 448 VVEV--STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
            ++   +T L+++Y KCGSL+ A KIF    +  +D+V W+ +I  Y  H   E A+ L 
Sbjct: 592 RLDTVAATALVNMYGKCGSLQEARKIFD--GMLHRDVVTWTSLIVAYAQHSEIEQALKLV 649

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
           K M Q GV+ ++V F S L  C H GLL+EG   F  M++++    R +HY CI+D+LGR
Sbjct: 650 KIMEQEGVKVDDVVFLSILSGCDHSGLLEEGCKYFVSMIDDYGISPRLEHYNCIIDVLGR 709

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           AG LD A  L+  +P +    VW  LL AC +HGN E G+ AA+ +  L+P  P  YV+L
Sbjct: 710 AGHLDLAEKLVDRLPSRSDSKVWMTLLAACRMHGNPERGKRAARRITLLDPSIPAAYVVL 769

Query: 626 SKLYSAVR 633
           S +Y+  +
Sbjct: 770 SNIYTQTQ 777



 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 175/585 (29%), Positives = 290/585 (49%), Gaps = 25/585 (4%)

Query: 28  SIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHV---SNVRILFDEMSERSSFLYNTVMK 83
           ++   +++HA I   G     +  ++L+  YG      +   LF  M   +   + +V+ 
Sbjct: 74  ALGDGRKVHAHIRELGLETDIYAANALINMYGKCRSPEDAFQLFSRMESPNVVSWTSVIG 133

Query: 84  MYAQNG-ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC--TDLAWRKLGIALHGRVLIT 140
            +AQ G    +S+ +F  M  L    P+  T   V++AC  TD      G  +HG VL  
Sbjct: 134 NFAQYGHLGRESVLLFRKM-ELEGIRPNLITMVAVLRACNLTD------GRQVHGYVLEA 186

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           G  +DT +GN L+ MY   G V  A  V   M +  V+SWN +ISGY ++   KE L   
Sbjct: 187 GMSLDTSLGNALVDMYCKTGGVDEADVVLREMPKRDVISWNIMISGYAQSGDCKEGLRCL 246

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
             M + G+ P   +  ++L AC   +++  G+ IH  V    L ++    + L+ MY KC
Sbjct: 247 WRMQQDGLSPTKVTYATLLNACSSEEDLGEGKSIHRSVVDMGLDRDEVVKSFLLGMYGKC 306

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           GS+ + +     + ER+ + W ++I  YA   D   AL  FQ MQ EGV+ +++T   +L
Sbjct: 307 GSLEDVKRSSCEVHERNTIAWNTIIGAYARYSDHFQALRSFQQMQLEGVKADAVTFVLML 366

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
             CSS  +L +G  LH W  +   E  +IV  +L  MYAKC  +  + ++F     + +V
Sbjct: 367 GTCSSPAHLAQGILLHDWISQLGFE-SIIVHNSLTAMYAKCGSLDAARKMFEEMPSRNSV 425

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            WN++++  + +G    A + F++M +E   P++ T  S+L A    A+ ++  +IH  +
Sbjct: 426 SWNSLMSAAIQHGCHADAHKFFQRMKLEGSRPDEVTCISMLDACTKQANAKEGSSIHQMV 485

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           +  GF     V+  LI +Y+K G  E+A  +F    + +++ V W+ I+A Y   G    
Sbjct: 486 VESGFDKRTGVANALIFMYAKLGDHEAARNVFD--AMAERNTVSWNTILAAYVEKGLNRD 543

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSH-GGLLDEGLDLFNFMLENHQTCSRADHY--T 557
           AV +F +M    V  ++VT+ +AL ACS   G L  G  +  +ML +H   +R D    T
Sbjct: 544 AVEMFWKM---DVARDKVTYVAALDACSGLAGGLAHGKLIHGYML-DHGFSNRLDTVAAT 599

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
            +V++ G+ G L EA  +   M L      W +L+ A   H  +E
Sbjct: 600 ALVNMYGKCGSLQEARKIFDGM-LHRDVVTWTSLIVAYAQHSEIE 643



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 148/499 (29%), Positives = 254/499 (50%), Gaps = 10/499 (2%)

Query: 102 LRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGE 161
           ++L    PD+ T+   +KACT       G  +H  +   G + D +  N LI MY     
Sbjct: 50  MQLEGVRPDSVTFVTCLKACTVEGALGDGRKVHAHIRELGLETDIYAANALINMYGKCRS 109

Query: 162 VKAARKVFDAMWEHSVVSWNTLISGYFKNAY-AKEALVVFDWMLKSGVEPDCASVVSVLP 220
            + A ++F  M   +VVSW ++I  + +  +  +E++++F  M   G+ P+  ++V+VL 
Sbjct: 110 PEDAFQLFSRMESPNVVSWTSVIGNFAQYGHLGRESVLLFRKMELEGIRPNLITMVAVLR 169

Query: 221 ACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT 280
           AC     +  GR +H  V    +  + +  NALVDMY K G V+EA +V   M +RDV++
Sbjct: 170 AC----NLTDGRQVHGYVLEAGMSLDTSLGNALVDMYCKTGGVDEADVVLREMPKRDVIS 225

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           W  MI+GYA +GD +  L     MQ +G+ P  +T  +LL+ACSS   L  G+S+H   +
Sbjct: 226 WNIMISGYAQSGDCKEGLRCLWRMQQDGLSPTKVTYATLLNACSSEEDLGEGKSIHRSVV 285

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
              L+ + +V++ L+ MY KC  ++   +      ++ T+ WN I+          +A+ 
Sbjct: 286 DMGLDRDEVVKSFLLGMYGKCGSLEDVKRSSCEVHERNTIAWNTIIGAYARYSDHFQALR 345

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
            F+QM +E V+ +  T   +L   +  A L Q + +H ++ + GF S++ V   L  +Y+
Sbjct: 346 SFQQMQLEGVKADAVTFVLMLGTCSSPAHLAQGILLHDWISQLGFESII-VHNSLTAMYA 404

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           KCGSL++A K+F E+P ++   V W+ +++    HG    A   F+ M   G +P+EVT 
Sbjct: 405 KCGSLDAARKMFEEMPSRNS--VSWNSLMSAAIQHGCHADAHKFFQRMKLEGSRPDEVTC 462

Query: 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
            S L AC+      EG  +   ++E+     R      ++ +  + G  + A ++   M 
Sbjct: 463 ISMLDACTKQANAKEGSSIHQMVVESGFD-KRTGVANALIFMYAKLGDHEAARNVFDAMA 521

Query: 581 LKPTHAVWGALLGACVIHG 599
            + T   W  +L A V  G
Sbjct: 522 ERNT-VSWNTILAAYVEKG 539



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 143/514 (27%), Positives = 250/514 (48%), Gaps = 22/514 (4%)

Query: 155 MYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY-AKEALVVFDWMLKSGVEPDCA 213
           MY   G++ AA +VF  +    V +W+ L+  Y  +   A +AL ++  M   GV PD  
Sbjct: 1   MYGKCGDLDAASEVFGKLDPLHVAAWSALLGAYANSENDAVQALELYKRMQLEGVRPDSV 60

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           + V+ L AC     +  GR +H  +    L  +I A NAL++MY KC S  +A  +F RM
Sbjct: 61  TFVTCLKACTVEGALGDGRKVHAHIRELGLETDIYAANALINMYGKCRSPEDAFQLFSRM 120

Query: 274 SERDVVTWTSMINGYALNGDV-RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
              +VV+WTS+I  +A  G + R ++ LF+ M+ EG+RPN +T+ ++L AC+    L  G
Sbjct: 121 ESPNVVSWTSVIGNFAQYGHLGRESVLLFRKMELEGIRPNLITMVAVLRACN----LTDG 176

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           R +H + ++  +  +  +  AL+DMY K   V  +  V     K+  + WN +++G   +
Sbjct: 177 RQVHGYVLEAGMSLDTSLGNALVDMYCKTGGVDEADVVLREMPKRDVISWNIMISGYAQS 236

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
           G  ++ +    +M  + + P   T  +LL A +   DL +  +IH  ++  G      V 
Sbjct: 237 GDCKEGLRCLWRMQQDGLSPTKVTYATLLNACSSEEDLGEGKSIHRSVVDMGLDRDEVVK 296

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
           + L+ +Y KCGSLE   +  S   + +++ + W+ II  Y  +     A+  F++M   G
Sbjct: 297 SFLLGMYGKCGSLEDVKR--SSCEVHERNTIAWNTIIGAYARYSDHFQALRSFQQMQLEG 354

Query: 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572
           V+ + VTF   L  CS    L +G+ L +++  +         +  +  +  + G LD A
Sbjct: 355 VKADAVTFVLMLGTCSSPAHLAQGILLHDWI--SQLGFESIIVHNSLTAMYAKCGSLDAA 412

Query: 573 YDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE---LEPENPGNYVLLSKLY 629
             +   MP + +   W +L+ A + HG        A   F+   LE   P     +S L 
Sbjct: 413 RKMFEEMPSRNS-VSWNSLMSAAIQHGC----HADAHKFFQRMKLEGSRPDEVTCISMLD 467

Query: 630 SAVRR--WKDAENVRDVMDEKGL--RKAPAHSLI 659
           +  ++   K+  ++  ++ E G   R   A++LI
Sbjct: 468 ACTKQANAKEGSSIHQMVVESGFDKRTGVANALI 501


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 190/574 (33%), Positives = 313/574 (54%), Gaps = 10/574 (1%)

Query: 93  DSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCL 152
           +SL +F  M R G + P+N+T+P V KAC  LA       +H  ++ + F  D FVG   
Sbjct: 35  ESLLLFREMKR-GGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTAT 93

Query: 153 IAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDC 212
           + M++    V  A KVF+ M E    +WN ++SG+ ++ +  +A  +F  M  + + PD 
Sbjct: 94  VDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDS 153

Query: 213 ASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI--AAWNALVDMYVKCGSVNEARLVF 270
            +V++++ +  + K +++   +H +  G RLG ++     N  +  Y KCG ++ A+LVF
Sbjct: 154 VTVMTLIQSASFEKSLKLLEAMHAV--GIRLGVDVQVTVANTWISTYGKCGDLDSAKLVF 211

Query: 271 DRMS--ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           + +   +R VV+W SM   Y++ G+  +A GL+ LM  E  +P+  T  +L ++C +   
Sbjct: 212 EAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPET 271

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L +GR +H+  I    + ++      I MY+K      +  +F   + +  V W  +++G
Sbjct: 272 LTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISG 331

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF-LS 447
               G   +A+ LF  M+    +P+  TL SL+        L+    I      YG    
Sbjct: 332 YAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRD 391

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            V +   LID+YSKCGS+  A  IF   P  +K +V W+ +IAGY ++G    A+ LF +
Sbjct: 392 NVMICNALIDMYSKCGSIHEARDIFDNTP--EKTVVTWTTMIAGYALNGIFLEALKLFSK 449

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M+    +PN +TF + L AC+H G L++G + F+ M + +      DHY+C+VDLLGR G
Sbjct: 450 MIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKG 509

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
           +L+EA +LIR M  KP   +WGALL AC IH NV++ E AA+ LF LEP+    YV ++ 
Sbjct: 510 KLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMAN 569

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +Y+A   W     +R +M ++ ++K P  S+I+V
Sbjct: 570 IYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQV 603



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 126/443 (28%), Positives = 208/443 (46%), Gaps = 19/443 (4%)

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           R+++      SV +WN  I          E+L++F  M + G EP+  +   V  AC  L
Sbjct: 6   RRLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARL 65

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
            ++    M+H  +       ++    A VDM+VKC SV+ A  VF+RM ERD  TW +M+
Sbjct: 66  ADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAML 125

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           +G+  +G    A  LF+ M+   + P+S+T+ +L+ + S    LK   ++HA  I+  ++
Sbjct: 126 SGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVD 185

Query: 346 CEVIVETALIDMYAKC---NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
            +V V    I  Y KC   +  KL F+   R   +  V WN++       G A  A  L+
Sbjct: 186 VQVTVANTWISTYGKCGDLDSAKLVFEAIDR-GDRTVVSWNSMFKAYSVFGEAFDAFGLY 244

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
             ML E  +P+ +T  +L  +      L Q   IH + I  G    +E     I +YSK 
Sbjct: 245 CLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKS 304

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
               SA  +F    +  +  V W+V+I+GY   G  + A++LF  M++SG +P+ VT  S
Sbjct: 305 EDTCSARLLFD--IMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLS 362

Query: 523 ALHACSHGGLLDEG------LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
            +  C   G L+ G       D++    +N   C+       ++D+  + G + EA D+ 
Sbjct: 363 LISGCGKFGSLETGKWIDARADIYGCKRDNVMICN------ALIDMYSKCGSIHEARDIF 416

Query: 577 RTMPLKPTHAVWGALLGACVIHG 599
              P K T   W  ++    ++G
Sbjct: 417 DNTPEK-TVVTWTTMIAGYALNG 438



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 134/454 (29%), Positives = 225/454 (49%), Gaps = 22/454 (4%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---RILFD--E 69
           V+ L+Q  +  KS+   + +HA  I  G  +   + ++ +  YG   ++   +++F+  +
Sbjct: 156 VMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAID 215

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
             +R+   +N++ K Y+  G + D+  ++  MLR  E+ PD  T+  +  +C +      
Sbjct: 216 RGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLR-EEFKPDLSTFINLAASCQNPETLTQ 274

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  +H   +  G D D    N  I+MY    +  +AR +FD M   + VSW  +ISGY +
Sbjct: 275 GRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAE 334

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV-AGGRLGKNIA 248
                EAL +F  M+KSG +PD  +++S++  CG    +E G+ I       G    N+ 
Sbjct: 335 KGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVM 394

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             NAL+DMY KCGS++EAR +FD   E+ VVTWT+MI GYALNG    AL LF  M    
Sbjct: 395 ICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLD 454

Query: 309 VRPNSLTIGSLLSACSSLYYLKRG-RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
            +PN +T  ++L AC+    L++G    H      N+   +   + ++D+  +   ++ +
Sbjct: 455 YKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEA 514

Query: 368 FQVFARTSKKKTVP-WNAILAGC-VHNG--LARKAVE-LFR---QMLVEVVE-PNDATLN 418
            ++    S K     W A+L  C +H    +A +A E LF    QM    VE  N     
Sbjct: 515 LELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAA 574

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
            +   +A +  + +  NI     +Y   SV++V+
Sbjct: 575 GMWDGFARIRSIMKQRNIK----KYPGESVIQVN 604



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 160/367 (43%), Gaps = 37/367 (10%)

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
           V  W   I       D   +L LF+ M+  G  PN+ T   +  AC+ L  +     +HA
Sbjct: 17  VNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHA 76

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
             IK     +V V TA +DM+ KCN V  + +VF R  ++    WNA+L+G   +G   K
Sbjct: 77  HLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDK 136

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
           A  LFR+M +  + P+  T+ +L+ + +    L+    +H   IR G    V V+   I 
Sbjct: 137 AFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWIS 196

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
            Y KCG L+SA  +F  I   D+ +V W+ +   Y + G    A  L+  M++   +P+ 
Sbjct: 197 TYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDL 256

Query: 518 VTFTSALHAC------SHGGLL---------DEGLDLFNFML----ENHQTCS------- 551
            TF +   +C      + G L+         D+ ++  N  +    ++  TCS       
Sbjct: 257 STFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDI 316

Query: 552 ----RADHYTCIVDLLGRAGRLDEAYDLIRTM---PLKPTHAVWGALLGACVIHGNVELG 604
                   +T ++      G +DEA  L   M     KP      +L+  C   G++E G
Sbjct: 317 MTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETG 376

Query: 605 EVAAKWL 611
               KW+
Sbjct: 377 ----KWI 379


>gi|297738941|emb|CBI28186.3| unnamed protein product [Vitis vinifera]
          Length = 760

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 210/635 (33%), Positives = 340/635 (53%), Gaps = 42/635 (6%)

Query: 34  QLHAFIITSGPLFTHLR--SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           Q+HAF I+SG   +H+   +SL+  Y   G      ++F+ ++      +NTV+  + + 
Sbjct: 99  QIHAFAISSG-FISHVTVPNSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGFQR- 156

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
             S D+L   L M   G    D  T   V+  C+D      G  LH R+L  G D + FV
Sbjct: 157 --SDDALNFALRMNFTG-VAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFV 213

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           GN LI MY     +  AR+    +                      EA++VF  MLK G+
Sbjct: 214 GNALITMYSRCCRLVEARRGNSGL----------------------EAILVFLEMLKEGM 251

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           + D  S    + ACG+ KE E+GR IH L        ++   N L+  Y KC  + +A+L
Sbjct: 252 KLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKL 311

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VF+ + +R+VV+WT+MI+         +A  LF  M+ +GV PN +T   L+ A +    
Sbjct: 312 VFESIIDRNVVSWTTMISISE-----EDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNL 366

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           ++ G+ +H   +K +   E+ V  +LI MYAK   +  S +VF   + ++ + WN++++G
Sbjct: 367 VEEGQMIHGVCVKTSFLSELNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISG 426

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP--AYAILADLQQAMNIHCYLIRYGFL 446
              NGL ++A++ F   L+E   PN+ T  S+L   A A    ++     H ++++ G  
Sbjct: 427 YAQNGLWQEALQTFLSALMES-RPNEFTFGSVLSSIASAEAISMRHGQRCHSHILKLGLN 485

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           +   VS+ L+D+Y+K GS+  +  +FSE P+K++  V W+ II+ +  HG  E  ++LFK
Sbjct: 486 TNPIVSSALLDMYAKRGSICESLGVFSETPLKNE--VAWTAIISAHARHGDYEAVMNLFK 543

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           +M + GV+P+ +TF + + AC   G++D G  LFN M+++H      +HY+ +VD+LGRA
Sbjct: 544 DMEREGVKPDSITFLAVITACGRKGMVDTGYQLFNSMVKDHLIEPSPEHYSSMVDMLGRA 603

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           GRL EA + +  +P     +V  +LLGAC IHGNV++ +  A  L E+EP   G+YVL+S
Sbjct: 604 GRLKEAEEFVGQIPGGAGLSVLQSLLGACRIHGNVDMAKRVADDLIEMEPMGSGSYVLMS 663

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            LY+    W+    +R  M E+G+RK    S ++V
Sbjct: 664 NLYAEKGEWEKVAKIRKGMRERGVRKEIGFSWVDV 698



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 157/614 (25%), Positives = 265/614 (43%), Gaps = 65/614 (10%)

Query: 39  IITSGPLFTHL-----RSSLVRAYGHVS-NVRILFDEMSERSSFLYNTVMKMYAQNGASH 92
           +IT  P F  L     + S+   Y H S +V    D+  + +    N  M    +   S 
Sbjct: 1   MITRHPPFKILHRVVQQRSIQFKYFHSSKHVHQPLDQSPQTTIASLNRSMLTALRRNLSL 60

Query: 93  DSLKMFLGMLRLGEY-NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNC 151
           ++L +F   L+ G   N D  T  IV+KAC   +  KLG  +H   + +GF     V N 
Sbjct: 61  EALDLFKKQLQWGFVGNIDQVTVAIVLKACCGDS--KLGCQIHAFAISSGFISHVTVPNS 118

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           L+ MY   G    A  VF+ +    +VSWNT++SG+ +   + +AL     M  +GV  D
Sbjct: 119 LMNMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGFQR---SDDALNFALRMNFTGVAFD 175

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFD 271
             +  +VL  C   +    G  +H  +    L   +   NAL+ MY +C  + EAR    
Sbjct: 176 AVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFVGNALITMYSRCCRLVEAR---- 231

Query: 272 RMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKR 331
                              N  +   L   ++++ EG++ + ++    +SAC      + 
Sbjct: 232 -----------------RGNSGLEAILVFLEMLK-EGMKLDHVSFTGAISACGHGKEFEL 273

Query: 332 GRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVH 391
           GR +H+  +K   +  V V   LI  Y+KC  ++ +  VF     +  V W  +++    
Sbjct: 274 GRQIHSLAVKIGYDTHVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMISISEE 333

Query: 392 NGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEV 451
           +     A  LF +M  + V PND T   L+ A  +   +++   IH   ++  FLS + V
Sbjct: 334 D-----ATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEGQMIHGVCVKTSFLSELNV 388

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
           S  LI +Y+K  S+  + K+F E+    ++I+ W+ +I+GY  +G  + A+  F   +  
Sbjct: 389 SNSLITMYAKFESMSDSMKVFEELNY--REIISWNSLISGYAQNGLWQEALQTFLSALME 446

Query: 512 GVQPNEVTFTSALHACS--------HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563
             +PNE TF S L + +        HG        +    L  +   S A     ++D+ 
Sbjct: 447 S-RPNEFTFGSVLSSIASAEAISMRHGQRCHS--HILKLGLNTNPIVSSA-----LLDMY 498

Query: 564 GRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF---ELEPENPG 620
            + G + E+  +    PLK     W A++ A   HG+ E    A   LF   E E   P 
Sbjct: 499 AKRGSICESLGVFSETPLK-NEVAWTAIISAHARHGDYE----AVMNLFKDMEREGVKPD 553

Query: 621 NYVLLSKLYSAVRR 634
           +   L+ + +  R+
Sbjct: 554 SITFLAVITACGRK 567


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 210/633 (33%), Positives = 341/633 (53%), Gaps = 38/633 (6%)

Query: 34  QLHAFIITSGPLFT-HLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASH 92
           +L   +I S    T H+R+      G V++   LF  M  RS+  YN ++  Y+ NG   
Sbjct: 33  RLEPEVIRSNKAITAHMRA------GRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLP 86

Query: 93  DSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCL 152
            +  +F  + R     PDNY+Y  ++ A    +       L   + +     D+   N +
Sbjct: 87  LAASLFRAIPR-----PDNYSYNTLLHALAVSSSLADARGLFDEMPVR----DSVTYNVM 137

Query: 153 IAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDC 212
           I+ + N G V  AR  FD   E   VSWN +++ Y +N   +EA  +F+    S  E D 
Sbjct: 138 ISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFN----SRTEWDV 193

Query: 213 ASVVSVLPACGYLKEIEMGRMIHELVAGGRL-GKNIAAWNALVDMYVKCGSVNEARLVFD 271
            S  +++   GY   ++ G+M        R+ G+++ +WN +V  Y + G + EAR +FD
Sbjct: 194 ISWNALM--SGY---VQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFD 248

Query: 272 RMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKR 331
               RDV TWT++++GYA NG +  A  +F  M       N+++  ++++A     Y++R
Sbjct: 249 AAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMP----ERNAVSWNAMVAA-----YIQR 299

Query: 332 GRSLHAWTIKQNLECEVIVE-TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
                A  +   + C  +     ++  YA+  +++ +  VF    +K  V W A+LA   
Sbjct: 300 RMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYS 359

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
             G + + ++LF +M       N +    +L   A +A L+  M +H  LIR G+     
Sbjct: 360 QGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCF 419

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           V   L+ +Y KCG++E A   F E+  +++D+V W+ +IAGY  HG G+ A+ +F  M  
Sbjct: 420 VGNALLAMYFKCGNMEDARNAFEEM--EERDVVSWNTMIAGYARHGFGKEALEIFDMMRT 477

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
           +  +P+++T    L ACSH GL+++G+  F  M  +    ++ +HYTC++DLLGRAGRL 
Sbjct: 478 TSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLA 537

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630
           EA+DL++ MP +P   +WGALLGA  IH N ELG  AA+ +FELEPEN G YVLLS +Y+
Sbjct: 538 EAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYA 597

Query: 631 AVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +  +W+DA  +R +M+E+G++K P  S IEV+N
Sbjct: 598 SSGKWRDARKMRVMMEERGVKKVPGFSWIEVQN 630


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 189/587 (32%), Positives = 314/587 (53%), Gaps = 4/587 (0%)

Query: 78   YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
            +N  +  + Q G + +++  F+ M+       D  T+ +++     L   +LG  +HG V
Sbjct: 874  WNKTLSWFLQRGETWEAVDCFVDMIN-SRVACDGLTFVVMLSVVAGLNCLELGKQIHGIV 932

Query: 138  LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
            + +G D    VGNCLI MY+  G V  AR VF  M E  +VSWNT+ISG   +   + ++
Sbjct: 933  VRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSV 992

Query: 198  VVFDWMLKSGVEPDCASVVSVLPACGYLKE-IEMGRMIHELVAGGRLGKNIAAWNALVDM 256
             +F  +L+ G+ PD  +V SVL AC  L     +   IH       +  +      L+D+
Sbjct: 993  GMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDV 1052

Query: 257  YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
            Y K G + EA  +F      D+ +W +M++GY ++GD   AL L+ LMQ  G R N +T+
Sbjct: 1053 YSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITL 1112

Query: 317  GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
             +   A   L  LK+G+ + A  +K+    ++ V + ++DMY KC  ++ + ++F     
Sbjct: 1113 ANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPS 1172

Query: 377  KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
               V W  +++GCV NG    A+  +  M +  V+P++ T  +L+ A ++L  L+Q   I
Sbjct: 1173 PDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQI 1232

Query: 437  HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
            H   ++        V T L+D+Y+KCG++E A  +F         I  W+ +I G   HG
Sbjct: 1233 HANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRT--NTSRIASWNAMIVGLAQHG 1290

Query: 497  HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
            + E A+  F+EM   GV P+ VTF   L ACSH GL+ E  + F  M + +      +HY
Sbjct: 1291 NAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHY 1350

Query: 557  TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
            +C+VD L RAGR+ EA  +I +MP + + +++  LL AC +  + E G+  A+ L  LEP
Sbjct: 1351 SCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEP 1410

Query: 617  ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
             +   YVLLS +Y+A  +W++  + R++M +  ++K P  S ++++N
Sbjct: 1411 SDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKN 1457



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 135/452 (29%), Positives = 233/452 (51%), Gaps = 7/452 (1%)

Query: 33   KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
            KQ+H  ++ SG      + + L+  Y   G VS  R +F +M+E     +NT++   A +
Sbjct: 926  KQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALS 985

Query: 89   GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR-KLGIALHGRVLITGFDMDTF 147
            G    S+ MF+ +LR G   PD +T   V++AC+ L     L   +H   +  G  +D+F
Sbjct: 986  GLEECSVGMFVDLLR-GGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSF 1044

Query: 148  VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
            V   LI +Y   G+++ A  +F       + SWN ++ GY  +    +AL ++  M +SG
Sbjct: 1045 VSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESG 1104

Query: 208  VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
               +  ++ +   A G L  ++ G+ I  +V       ++   + ++DMY+KCG +  AR
Sbjct: 1105 ERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESAR 1164

Query: 268  LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
             +F+ +   D V WT+MI+G   NG   +AL  +  M+   V+P+  T  +L+ ACS L 
Sbjct: 1165 RIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLT 1224

Query: 328  YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
             L++GR +HA T+K N   +  V T+L+DMYAKC  ++ +  +F RT+  +   WNA++ 
Sbjct: 1225 ALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIV 1284

Query: 388  GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM-NIHCYLIRYGFL 446
            G   +G A +A++ F +M    V P+  T   +L A +    + +A  N +     YG  
Sbjct: 1285 GLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIE 1344

Query: 447  SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
              +E  + L+D  S+ G +  A K+ S +P +
Sbjct: 1345 PEIEHYSCLVDALSRAGRIREAEKVISSMPFE 1376



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 161/623 (25%), Positives = 274/623 (43%), Gaps = 73/623 (11%)

Query: 4    PSH--HTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAY--- 57
            P+H  H++P+       +++   A   +   K+ HA I+TSG      L ++L+  Y   
Sbjct: 619  PAHLIHSIPQW----FSILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKC 674

Query: 58   GHVSNVRILFDEMSERSSFL--YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
            G +S+ R LFD   + S  L  +N ++  +A    + D   +F  +LR    +   +T  
Sbjct: 675  GSLSSARKLFDTTPDTSRDLVTWNAILSAHADK--ARDGFHLFR-LLRRSFVSATRHTLA 731

Query: 116  IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
             V K C   A      +LHG  +  G   D FV   L+ +Y  FG ++ AR +FD M   
Sbjct: 732  PVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLR 791

Query: 176  SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
             VV WN ++  Y       EAL++F    ++G+ PD  ++      C   + ++  + + 
Sbjct: 792  DVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTL------CTLARVVKSKQNVL 845

Query: 236  ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
            E        K + A+   + MY                   DV+ W   ++ +   G+  
Sbjct: 846  EWQL-----KQLKAYGTKLFMYDD------------DDDGSDVIAWNKTLSWFLQRGETW 888

Query: 296  NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
             A+  F  M    V  + LT   +LS  + L  L+ G+ +H   ++  L+  V V   LI
Sbjct: 889  EAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLI 948

Query: 356  DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
            +MY K   V  +  VF + ++   V WN +++GC  +GL   +V +F  +L   + P+  
Sbjct: 949  NMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQF 1008

Query: 416  TLNSLLPAYAIL-ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
            T+ S+L A + L      A  IH   ++ G +    VST LID+YSK G +E A  +F  
Sbjct: 1009 TVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLF-- 1066

Query: 475  IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL-- 532
            +     D+  W+ ++ GY + G    A+ L+  M +SG + N++T  +A  A   GGL  
Sbjct: 1067 VNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAA--GGLVG 1124

Query: 533  LDEG-------------LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
            L +G             LDLF                + ++D+  + G ++ A  +   +
Sbjct: 1125 LKQGKQIQAVVVKRGFNLDLFVI--------------SGVLDMYLKCGEMESARRIFNEI 1170

Query: 580  PLKPTHAVWGALLGACVIHGNVE 602
            P  P    W  ++  CV +G  E
Sbjct: 1171 P-SPDDVAWTTMISGCVENGQEE 1192


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 195/658 (29%), Positives = 339/658 (51%), Gaps = 8/658 (1%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH---VSNVRI 65
           P  T   + L++  +A + ++   Q+HA  + +G  +     S+LV  YG    + +   
Sbjct: 189 PDRTTFAV-LLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALC 247

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
            F  M ER+   +   +    QN      L++F+ M RLG       +Y    ++C  ++
Sbjct: 248 FFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLG-LGVSQPSYASAFRSCAAMS 306

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
               G  LH   +   F  D  VG  ++ +Y     +  AR+ F  +  H+V + N ++ 
Sbjct: 307 CLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMV 366

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           G  +     EA+ +F +M++S +  D  S+  V  AC   K    G+ +H L        
Sbjct: 367 GLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDV 426

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           +I   NA++D+Y KC ++ EA L+F  M ++D V+W ++I     NG   + +  F  M 
Sbjct: 427 DICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEML 486

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
             G++P+  T GS+L AC++L  L+ G  +H   IK  L  +  V + ++DMY KC ++ 
Sbjct: 487 RFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIID 546

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + ++  R   ++ V WNAIL+G   N  + +A + F +ML   ++P+  T  ++L   A
Sbjct: 547 EAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCA 606

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            LA ++    IH  +I+   L    +S+ L+D+Y+KCG +  +  +F +  ++ +D V W
Sbjct: 607 NLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEK--VEKRDFVSW 664

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +I GY +HG G  A+ +F+ M +  V PN  TF + L ACSH GL D+G   F+ M  
Sbjct: 665 NAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTT 724

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
           +++   + +H+ C+VD+LGR+    EA   I +MP +    +W  LL  C I  +VE+ E
Sbjct: 725 HYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAE 784

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +AA  +  L+P++   Y+LLS +Y+   +W D    R ++ +  L+K P  S IEV++
Sbjct: 785 LAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQS 842



 Score =  246 bits (627), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 153/573 (26%), Positives = 279/573 (48%), Gaps = 15/573 (2%)

Query: 51  SSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++++ AY H  ++     LFD M +     +N ++  Y Q G   +S+ +F+ M R G  
Sbjct: 129 NTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRG-V 187

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
           +PD  T+ +++K+C+ L    LG+ +H   + TG ++D   G+ L+ MY     +  A  
Sbjct: 188 SPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALC 247

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
            F  M E + VSW   I+G  +N      L +F  M + G+     S  S   +C  +  
Sbjct: 248 FFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSC 307

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +  GR +H      +   +     A+VD+Y K  S+ +AR  F  +    V T  +M+ G
Sbjct: 308 LNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG 367

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
               G    A+GLFQ M    +R + +++  + SAC+      +G+ +H   IK   + +
Sbjct: 368 LVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVD 427

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           + V  A++D+Y KC  +  ++ +F    +K +V WNAI+A    NG     +  F +ML 
Sbjct: 428 ICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR 487

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
             ++P+D T  S+L A A L  L+  + +H  +I+ G  S   V++ ++D+Y KCG ++ 
Sbjct: 488 FGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDE 547

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A K+     I  + +V W+ I++G+ ++   E A   F EM+  G++P+  TF + L  C
Sbjct: 548 AQKLHDR--IGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTC 605

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           ++   ++ G  +   +++        D Y  + +VD+  + G + ++  L+     K   
Sbjct: 606 ANLATIELGKQIHGQIIKQEML---DDEYISSTLVDMYAKCGDMPDSL-LVFEKVEKRDF 661

Query: 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
             W A++    +HG   LG  A +    ++ EN
Sbjct: 662 VSWNAMICGYALHG---LGVEALRMFERMQKEN 691



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 147/495 (29%), Positives = 242/495 (48%), Gaps = 37/495 (7%)

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           DT   N ++  Y + G++  A  +FD M +  VVSWN L+SGY +    +E++ +F  M 
Sbjct: 124 DTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMA 183

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
           + GV PD  +   +L +C  L+E+ +G  +H L     L  ++   +ALVDMY KC S++
Sbjct: 184 RRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLD 243

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
           +A   F  M ER+ V+W + I G   N      L LF  MQ  G+  +  +  S   +C+
Sbjct: 244 DALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCA 303

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
           ++  L  GR LHA  IK     + +V TA++D+YAK N +  + + F           NA
Sbjct: 304 AMSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNA 363

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           ++ G V  GL  +A+ LF+ M+   +  +  +L+ +  A A      Q   +HC  I+ G
Sbjct: 364 MMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSG 423

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
           F   + V+  ++D+Y KC +L  A+ IF    +K KD V W+ IIA    +GH +  +  
Sbjct: 424 FDVDICVNNAVLDLYGKCKALMEAYLIFQ--GMKQKDSVSWNAIIAALEQNGHYDDTILH 481

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           F EM++ G++P++ T+ S L AC+    L+ GL + + ++++    S A   + +VD+  
Sbjct: 482 FNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLG-SDAFVASTVVDMYC 540

Query: 565 RAGRLDEAYDL----------------------------------IRTMPLKPTHAVWGA 590
           + G +DEA  L                                  +  M LKP H  +  
Sbjct: 541 KCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFAT 600

Query: 591 LLGACVIHGNVELGE 605
           +L  C     +ELG+
Sbjct: 601 VLDTCANLATIELGK 615


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 198/615 (32%), Positives = 322/615 (52%), Gaps = 12/615 (1%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +G + N + LFD MSERS   YN ++  Y   G  H ++ +F    R+     D ++Y  
Sbjct: 57  WGEMGNAQKLFDRMSERSVISYNILISGYGGMGFYHKAIGLF-SEARMACLKLDKFSYAG 115

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           V+ AC  +    LG  +HG  ++ G     F+ N LI MY     +  AR +F++  E  
Sbjct: 116 VLSACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELD 175

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK---EIEMGRM 233
            VSWN+LI+GY +    +E L +   M  +G+  +  ++ S L +C YL     +  G+ 
Sbjct: 176 NVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSC-YLNLNNMVSYGKT 234

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           +H       L  +I    AL+DMY K G + +A  +F     ++VV + +MI G+    D
Sbjct: 235 LHGYTVKQGLDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTED 294

Query: 294 VRN-----ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
           +       AL LF  MQ +G++P+  T  S++  C+ +   + G+ +HA   K N++ + 
Sbjct: 295 IDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDE 354

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
            + + LI++Y+     +   + F  T K   V W  ++AG   NG    A+ LF ++L  
Sbjct: 355 FIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLAS 414

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
             +P++  + ++L A A +A  +    +H Y ++ G  ++  V    I +Y+K G+L+SA
Sbjct: 415 GKKPDEFIITTMLSACADVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSA 474

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
              F EI  K+ D+V WSV+I     HGH + A++LF+ M   G+ PN++TF   L ACS
Sbjct: 475 KITFEEI--KNPDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACS 532

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           HGGL++EGL  +  M +++       H TCIVDLL RAGRL +A + I          +W
Sbjct: 533 HGGLVEEGLRYYESMKKDYDMKINVKHCTCIVDLLSRAGRLLDAKNFILNSGFGDHPVMW 592

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
             LL  C I+ ++  G+  A+ L EL+P+   +YVLL  +Y+       A  +R++M ++
Sbjct: 593 RTLLSGCRIYKDIVTGKHVAEKLIELDPQESSSYVLLYNIYTDAGIDLPATKIRELMKDR 652

Query: 649 GLRKAPAHSLIEVRN 663
           G+RK P  S IEV N
Sbjct: 653 GIRKEPGQSWIEVGN 667


>gi|449469206|ref|XP_004152312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Cucumis sativus]
          Length = 873

 Score =  344 bits (883), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 216/681 (31%), Positives = 358/681 (52%), Gaps = 50/681 (7%)

Query: 27  KSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVS----NVRILFDEMSERSSFLYNTV 81
           K + G K +H+F++ SG    T + ++L+  Y        +    F+ +  +    +NT+
Sbjct: 161 KGVVG-KSIHSFVMKSGLDRDTLVGNALISMYAKSGQPWYDAYAAFNSIIHKDVVTWNTI 219

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR---KLGIALHGRV- 137
           +   A+     D+L++F  ML      P+  T   ++  C         + G  +HG + 
Sbjct: 220 ISALAEKNLMFDALQLFSLMLE-EPIEPNYITIACILPVCASFGNNVSCRFGKEIHGYIH 278

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
             T    D  V N L+ +Y+  G+++ A  +F  + +  +VSWNTLISGY  N    EA+
Sbjct: 279 RRTELIEDISVCNALMNLYLRVGQMEEAEILFSHLKQRDLVSWNTLISGYSLNDKWLEAV 338

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVDM 256
             F  +L  G +PD  +++SVLPAC Y + + +G+MIH  ++    L ++    NALV  
Sbjct: 339 DHFCKLLCLGSDPDSVTLISVLPACAYSQNLRIGKMIHGYILRHPVLSEDSTVGNALVSF 398

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y KC  V  A   F  +S +D+++W S++N +A  G+      L  LM  E  +P+  TI
Sbjct: 399 YTKCNDVKSAFHSFSLISSKDLISWNSVLNAFAEFGNTTQFPRLLHLMLRERFKPDHFTI 458

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNL---ECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            S+++ C ++    + + +H ++++  L   +    +  AL+D Y+KC ++  + ++F  
Sbjct: 459 LSIINFCITVLGGCKVKEVHCYSVRACLFEADYGPTILNALLDAYSKCGIIDYALKIFES 518

Query: 374 TSKKKTV--------------------------------PWNAILAGCVHNGLARKAVEL 401
           +S K+ +                                 WN ++     N   R A+ L
Sbjct: 519 SSGKRNLVTCNSMISCYVNCKSPNDALTIFSGMSETDLTTWNLMIRVYAENNCPRDALGL 578

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
           FR++ ++ ++P+  ++ SLLP    LA  +     H Y  R  F  V  +   L+D Y+K
Sbjct: 579 FRRLQIKGMKPDAVSIMSLLPVCNELASFRLLKECHGYSFRSRFEDVY-LDGALLDAYAK 637

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
           CG+++ A+K+F       KD+V+++ +I+GY +HG GE A+ +F  M++SGV+P+ V  T
Sbjct: 638 CGAVDCAYKLFES--SSQKDLVMFTSMISGYAIHGMGEEALKVFTNMLESGVKPDHVVVT 695

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581
           S L ACSH GL+D+GL++F+ M E        +HY C+VDLL R GR+ +AY  +  MP+
Sbjct: 696 SILSACSHTGLVDQGLNIFHSMEEVIHIKPTMEHYACVVDLLARGGRIKDAYSFVIGMPI 755

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENV 641
           +P   +WG LLGAC  H  VELG V A+ LFE + ++ GNYV++S LY+A  +W     V
Sbjct: 756 QPDANIWGTLLGACKTHHEVELGLVVAEQLFETKADDIGNYVVMSNLYAADAKWDGVLEV 815

Query: 642 RDVMDEKGLRKAPAHSLIEVR 662
           R +M EK L+K P  S IEV 
Sbjct: 816 RKLMKEKELKKPPGCSWIEVE 836



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 174/670 (25%), Positives = 310/670 (46%), Gaps = 63/670 (9%)

Query: 13  THLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAY---GHVSNVRILFD 68
            H+   + +  AA  +I   K L  + +  G +    +   L+  Y   G       LF+
Sbjct: 43  NHIFAAIFKSCAALFAINIGKALQGYAVKQGEIACQSVYKGLLNLYARCGAFDECWKLFE 102

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDS--LKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           +++ R    +N ++  Y ++   HD+  +++F+ M   GE  P   T   ++  C+ +  
Sbjct: 103 QLNHRDVVTWNIILSGYCRSQI-HDTKAIRLFVKMHAEGEVKPSAITIASILPVCSRVGK 161

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEV-KAARKVFDAMWEHSVVSWNTLIS 185
             +G ++H  V+ +G D DT VGN LI+MY   G+    A   F+++    VV+WNT+IS
Sbjct: 162 GVVGKSIHSFVMKSGLDRDTLVGNALISMYAKSGQPWYDAYAAFNSIIHKDVVTWNTIIS 221

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC---GYLKEIEMGRMIHELV-AGG 241
              +     +AL +F  ML+  +EP+  ++  +LP C   G       G+ IH  +    
Sbjct: 222 ALAEKNLMFDALQLFSLMLEEPIEPNYITIACILPVCASFGNNVSCRFGKEIHGYIHRRT 281

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
            L ++I+  NAL+++Y++ G + EA ++F  + +RD+V+W ++I+GY+LN     A+  F
Sbjct: 282 ELIEDISVCNALMNLYLRVGQMEEAEILFSHLKQRDLVSWNTLISGYSLNDKWLEAVDHF 341

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN-LECEVIVETALIDMYAK 360
             +   G  P+S+T+ S+L AC+    L+ G+ +H + ++   L  +  V  AL+  Y K
Sbjct: 342 CKLLCLGSDPDSVTLISVLPACAYSQNLRIGKMIHGYILRHPVLSEDSTVGNALVSFYTK 401

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           CN VK +F  F+  S K  + WN++L      G   +   L   ML E  +P+  T+ S+
Sbjct: 402 CNDVKSAFHSFSLISSKDLISWNSVLNAFAEFGNTTQFPRLLHLMLRERFKPDHFTILSI 461

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSV---VEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +     +    +   +HCY +R           +   L+D YSKCG ++ A KIF     
Sbjct: 462 INFCITVLGGCKVKEVHCYSVRACLFEADYGPTILNALLDAYSKCGIIDYALKIFESSSG 521

Query: 478 K------------------------------DKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
           K                              + D+  W+++I  Y  +     A+ LF+ 
Sbjct: 522 KRNLVTCNSMISCYVNCKSPNDALTIFSGMSETDLTTWNLMIRVYAENNCPRDALGLFRR 581

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA---DHYT--CIVDL 562
           +   G++P+ V+  S L  C+        L  F  + E H    R+   D Y    ++D 
Sbjct: 582 LQIKGMKPDAVSIMSLLPVCNE-------LASFRLLKECHGYSFRSRFEDVYLDGALLDA 634

Query: 563 LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE-LEPENPGN 621
             + G +D AY L  +   K    ++ +++    IHG   +GE A K     LE     +
Sbjct: 635 YAKCGAVDCAYKLFESSSQKDL-VMFTSMISGYAIHG---MGEEALKVFTNMLESGVKPD 690

Query: 622 YVLLSKLYSA 631
           +V+++ + SA
Sbjct: 691 HVVVTSILSA 700



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 125/459 (27%), Positives = 228/459 (49%), Gaps = 11/459 (2%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGE-YNPDNYTYPIVIKACTDLAWRKLGIALHGR 136
           +++ ++    N    + L +F+   +    + PDN+ +  + K+C  L    +G AL G 
Sbjct: 9   WSSTIRNLCLNAKHQEVLSVFVHKFQCSSGFKPDNHIFAAIFKSCAALFAINIGKALQGY 68

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA-YAKE 195
            +  G      V   L+ +Y   G      K+F+ +    VV+WN ++SGY ++  +  +
Sbjct: 69  AVKQGEIACQSVYKGLLNLYARCGAFDECWKLFEQLNHRDVVTWNIILSGYCRSQIHDTK 128

Query: 196 ALVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           A+ +F  M   G V+P   ++ S+LP C  + +  +G+ IH  V    L ++    NAL+
Sbjct: 129 AIRLFVKMHAEGEVKPSAITIASILPVCSRVGKGVVGKSIHSFVMKSGLDRDTLVGNALI 188

Query: 255 DMYVKCGSV-NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
            MY K G    +A   F+ +  +DVVTW ++I+  A    + +AL LF LM  E + PN 
Sbjct: 189 SMYAKSGQPWYDAYAAFNSIIHKDVVTWNTIISALAEKNLMFDALQLFSLMLEEPIEPNY 248

Query: 314 LTIGSLLSACSSL---YYLKRGRSLHAWTIKQNLECEVI-VETALIDMYAKCNLVKLSFQ 369
           +TI  +L  C+S       + G+ +H +  ++    E I V  AL+++Y +   ++ +  
Sbjct: 249 ITIACILPVCASFGNNVSCRFGKEIHGYIHRRTELIEDISVCNALMNLYLRVGQMEEAEI 308

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           +F+   ++  V WN +++G   N    +AV+ F ++L    +P+  TL S+LPA A   +
Sbjct: 309 LFSHLKQRDLVSWNTLISGYSLNDKWLEAVDHFCKLLCLGSDPDSVTLISVLPACAYSQN 368

Query: 430 LQQAMNIHCYLIRYGFLSV-VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
           L+    IH Y++R+  LS    V   L+  Y+KC  ++SA   FS   I  KD++ W+ +
Sbjct: 369 LRIGKMIHGYILRHPVLSEDSTVGNALVSFYTKCNDVKSAFHSFS--LISSKDLISWNSV 426

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           +  +   G+      L   M++   +P+  T  S ++ C
Sbjct: 427 LNAFAEFGNTTQFPRLLHLMLRERFKPDHFTILSIINFC 465



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 130/261 (49%), Gaps = 9/261 (3%)

Query: 277 DVVTWTSMINGYALNGDVRNALGLF--QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
           D  +W+S I    LN   +  L +F  +     G +P++    ++  +C++L+ +  G++
Sbjct: 5   DFTSWSSTIRNLCLNAKHQEVLSVFVHKFQCSSGFKPDNHIFAAIFKSCAALFAINIGKA 64

Query: 335 LHAWTIKQ-NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG-CVHN 392
           L  + +KQ  + C+ + +  L+++YA+C      +++F + + +  V WN IL+G C   
Sbjct: 65  LQGYAVKQGEIACQSVYK-GLLNLYARCGAFDECWKLFEQLNHRDVVTWNIILSGYCRSQ 123

Query: 393 GLARKAVELFRQMLVE-VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEV 451
               KA+ LF +M  E  V+P+  T+ S+LP  + +       +IH ++++ G      V
Sbjct: 124 IHDTKAIRLFVKMHAEGEVKPSAITIASILPVCSRVGKGVVGKSIHSFVMKSGLDRDTLV 183

Query: 452 STGLIDIYSKCGS-LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
              LI +Y+K G     A+  F+ I    KD+V W+ II+          A+ LF  M++
Sbjct: 184 GNALISMYAKSGQPWYDAYAAFNSII--HKDVVTWNTIISALAEKNLMFDALQLFSLMLE 241

Query: 511 SGVQPNEVTFTSALHACSHGG 531
             ++PN +T    L  C+  G
Sbjct: 242 EPIEPNYITIACILPVCASFG 262


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 221/681 (32%), Positives = 340/681 (49%), Gaps = 118/681 (17%)

Query: 33  KQLHAFIITS---------GPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMK 83
           +QLHA II +           L  H   + +RA  H ++  +LF+     + F++ ++++
Sbjct: 18  RQLHAQIIHNSLHHHNYWVALLINH--CTRLRAPPHYTH--LLFNSTLNPNVFVFTSMLR 73

Query: 84  MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD 143
            Y+        + MF  M   G   PD + YPI+IK+  +      GI  H  VL  G  
Sbjct: 74  FYSHLQDHAKVVLMFEHMQGCG-VRPDAFVYPILIKSAGNG-----GIGFHAHVLKLGHG 127

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAM--WEHSVVSWNTLISGYFKNAYAKEALVVFD 201
            D FV N +I MY   G +  ARKVFD +  +E  V  WN ++SGY+K     +A  +FD
Sbjct: 128 SDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFD 187

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
                           V+P                        +N+  W A+V  Y K  
Sbjct: 188 ----------------VMPE-----------------------RNVITWTAMVTGYAKVK 208

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
            +  AR  FD M ER VV+W +M++GYA NG     L LF  M   G+ P+  T  +++S
Sbjct: 209 DLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVIS 268

Query: 322 ACSSLYYLKRG---------RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF- 371
           ACSS     RG         R+LH    ++ ++    V TAL+DMYAKC  +  + ++F 
Sbjct: 269 ACSS-----RGDPCLAASLVRTLH----QKQIQLNCFVRTALLDMYAKCGSIGAARRIFD 319

Query: 372 --------------------------ART-----SKKKTVPWNAILAGCVHNGLARKAVE 400
                                     AR        +  V WN+++AG   NG +  A+E
Sbjct: 320 ELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIE 379

Query: 401 LFRQMLV-EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459
           LF++M+  + + P++ T+ S++ A   L  L+    +  +L        +     +I +Y
Sbjct: 380 LFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMY 439

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
           S+CGS+E A ++F E+  +D  +V ++ +I+G+  HGHG  A++L   M + G++P+ VT
Sbjct: 440 SRCGSMEDAKRVFQEMATRD--VVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVT 497

Query: 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
           F   L ACSH GLL+EG  +F  + +        DHY C+VDLLGR G L++A   +  M
Sbjct: 498 FIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERM 552

Query: 580 PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAE 639
           P++P   V+G+LL A  IH  VELGE+AA  LFELEP+N GN++LLS +Y++  RWKD E
Sbjct: 553 PMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVE 612

Query: 640 NVRDVMDEKGLRKAPAHSLIE 660
            +R+ M + G++K    S +E
Sbjct: 613 RIREAMKKGGVKKTTGWSWVE 633


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 184/497 (37%), Positives = 279/497 (56%), Gaps = 5/497 (1%)

Query: 169 FDAMWEHSVVSWNTLISGYF--KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           F  +W+HS  ++  +        +  +K  L V D +    +EPD     ++L  C  L 
Sbjct: 29  FRRLWQHSESTFCVIDDRNLLRPSLNSKTGLHVLDLIDCGSLEPDRTLYNTLLKRCTQLG 88

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
           +++ G+++H  V       ++   N+L+ MY +CGS+  AR +FD M  RD+V+WTSMI 
Sbjct: 89  KLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMIT 148

Query: 287 GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346
           GYA N    +AL LF  M  +G  PN  T+ SL+  C  +     GR +HA   K     
Sbjct: 149 GYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHS 208

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
            V V ++L+DMYA+C  +  +  VF +   K  V WNA++AG    G   +A+ LF +M 
Sbjct: 209 NVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQ 268

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
            E   P + T ++LL + + +  L+Q   +H +L++     V  V   L+ +Y+K GS+ 
Sbjct: 269 REGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIR 328

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
            A K+F ++     D+V  + ++ GY  HG G+ A   F EM++ G++PN++TF S L A
Sbjct: 329 DAEKVFDKLV--KVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTA 386

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           CSH  LLDEG   F  M   +    +  HY  IVDLLGRAG LD+A   I  MP++PT A
Sbjct: 387 CSHARLLDEGKHYFGLM-RKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVA 445

Query: 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646
           +WGALLGA  +H N E+G  AA+ +FEL+P  PG + LL+ +Y++  RW+D   VR +M 
Sbjct: 446 IWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVRKIMK 505

Query: 647 EKGLRKAPAHSLIEVRN 663
           + G++K PA S +EV N
Sbjct: 506 DSGVKKEPACSWVEVEN 522



 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 134/401 (33%), Positives = 215/401 (53%), Gaps = 1/401 (0%)

Query: 99  LGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMN 158
           L ++  G   PD   Y  ++K CT L   K G  +H  VL + F  D  + N L+ MY  
Sbjct: 62  LDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYAR 121

Query: 159 FGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSV 218
            G ++ AR++FD M    +VSW ++I+GY +N  A +AL++F  ML  G EP+  ++ S+
Sbjct: 122 CGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSL 181

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
           +  CGY+     GR IH          N+   ++LVDMY +CG + EA LVFD++  ++ 
Sbjct: 182 VKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNE 241

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           V+W ++I GYA  G+   AL LF  MQ EG RP   T  +LLS+CSS+  L++G+ LHA 
Sbjct: 242 VSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAH 301

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
            +K + +    V   L+ MYAK   ++ + +VF +  K   V  N++L G   +GL ++A
Sbjct: 302 LMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEA 361

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
            + F +M+   +EPND T  S+L A +    L +  +    + +Y     V     ++D+
Sbjct: 362 AQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDL 421

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
             + G L+ A     E+PI +  + +W  ++    MH + E
Sbjct: 422 LGRAGLLDQAKSFIEEMPI-EPTVAIWGALLGASKMHKNTE 461



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 169/354 (47%), Gaps = 8/354 (2%)

Query: 36  HAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSL 95
           H  +I +  LF + R       G +   R LFDEM  R    + +++  YAQN  + D+L
Sbjct: 107 HDLVIQNSLLFMYARC------GSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDAL 160

Query: 96  KMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAM 155
            +F  ML  G   P+ +T   ++K C  +A    G  +H      G   + FVG+ L+ M
Sbjct: 161 LLFPRMLSDGA-EPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDM 219

Query: 156 YMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASV 215
           Y   G +  A  VFD +   + VSWN LI+GY +    +EAL +F  M + G  P   + 
Sbjct: 220 YARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTY 279

Query: 216 VSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE 275
            ++L +C  +  +E G+ +H  +            N L+ MY K GS+ +A  VFD++ +
Sbjct: 280 SALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVK 339

Query: 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
            DVV+  SM+ GYA +G  + A   F  M   G+ PN +T  S+L+ACS    L  G+  
Sbjct: 340 VDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHY 399

Query: 336 HAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP-WNAILAG 388
                K N+E +V     ++D+  +  L+  +         + TV  W A+L  
Sbjct: 400 FGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGA 453


>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
 gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
          Length = 583

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 193/546 (35%), Positives = 294/546 (53%), Gaps = 6/546 (1%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           +I  C+     + G+ LH   + T    D  V N ++ +Y    +++ AR+VFD M E +
Sbjct: 9   LIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEMSERN 68

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           +VSW+ +ISGY +      AL +F    K  + P+     SV+ AC  LK +  G+ IH 
Sbjct: 69  LVSWSAMISGYEQIGEPISALGLFS---KLNIVPNEYVYASVISACASLKGLVQGKQIHG 125

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
                 L       NAL+ MY+KCG  ++A L ++   E + V + ++I G+  N     
Sbjct: 126 QALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNPVAYNALITGFVENQQPDK 185

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
              + ++M  +G  P+  T   LL  C+S   LKRG  LH  TIK  L     +   +I 
Sbjct: 186 GFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNSTAFIGNLIIT 245

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV-VEPNDA 415
           MY+K NL++ + + F    +K  + WN  ++ C H     KA+E F++ML E  V P++ 
Sbjct: 246 MYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNECRVRPDEF 305

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           T  S L A + LA +     IH +LIR      V     LI++Y+KCG +  A+ IFS++
Sbjct: 306 TFASALAACSGLASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIAKAYYIFSKM 365

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
             + +++V W+ +IAG+G HG G  A  LF +M   GV+P+ VTF   L A +H GL+DE
Sbjct: 366 --EHQNLVSWNTMIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLTASNHAGLVDE 423

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           GL  FN M E +      +H++C++DLLGRAGRL+EA + ++  P      V G+LL AC
Sbjct: 424 GLVYFNSMEETYGISPEIEHFSCLIDLLGRAGRLNEAKEYMKKFPFGHDTVVLGSLLSAC 483

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
            +HG+V+ G+  A+ L +L+P     YVLLS LY++   W        ++   GL+K P 
Sbjct: 484 RLHGDVDTGKCFARQLLKLQPATTSPYVLLSNLYASDEMWDGVAEAWKLLKGSGLKKEPG 543

Query: 656 HSLIEV 661
           HSLIEV
Sbjct: 544 HSLIEV 549



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 150/515 (29%), Positives = 246/515 (47%), Gaps = 27/515 (5%)

Query: 14  HLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNV---------- 63
            LV  L+ Q + TK++     LHA  I      T  RS ++ +  H+ N+          
Sbjct: 4   ELVGSLIHQCSKTKALRQGLPLHAIAIK-----TATRSDVIVS-NHILNLYAKCRKLREA 57

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTD 123
           R +FDEMSER+   ++ ++  Y Q G    +L +F  +       P+ Y Y  VI AC  
Sbjct: 58  RQVFDEMSERNLVSWSAMISGYEQIGEPISALGLFSKL----NIVPNEYVYASVISACAS 113

Query: 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
           L     G  +HG+ L  G D  +FV N LI MYM  G+   A   ++   E + V++N L
Sbjct: 114 LKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDALLAYNEALELNPVAYNAL 173

Query: 184 ISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243
           I+G+ +N    +   V   M + G  PD  + V +L  C    +++ G ++H      +L
Sbjct: 174 ITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKL 233

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
                  N ++ MY K   + EA   F  + E+D+++W + I+  +   D   AL  F+ 
Sbjct: 234 NSTAFIGNLIITMYSKLNLLEEAEKAFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKE 293

Query: 304 MQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
           M  E  VRP+  T  S L+ACS L  +  G+ +H   I+  L  +V    ALI+MYAKC 
Sbjct: 294 MLNECRVRPDEFTFASALAACSGLASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCG 353

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            +  ++ +F++   +  V WN ++AG  ++G   KA ELF +M    V+P+  T   LL 
Sbjct: 354 CIAKAYYIFSKMEHQNLVSWNTMIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLT 413

Query: 423 A--YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           A  +A L D +  +  +     YG    +E  + LID+  + G L  A +   + P    
Sbjct: 414 ASNHAGLVD-EGLVYFNSMEETYGISPEIEHFSCLIDLLGRAGRLNEAKEYMKKFPF-GH 471

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP 515
           D VV   +++   +HG  +T     +++++  +QP
Sbjct: 472 DTVVLGSLLSACRLHGDVDTGKCFARQLLK--LQP 504


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 189/534 (35%), Positives = 303/534 (56%), Gaps = 57/534 (10%)

Query: 140 TGFDMDTFVGN-----CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           T FD +  + N      L++ Y+ +  ++ AR++FDAM   +V+SWNT+I GY +  +  
Sbjct: 118 TLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWID 177

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           +AL +F+ M      P+                                 +N+ +WN ++
Sbjct: 178 QALDLFEXM------PE---------------------------------RNVVSWNTVI 198

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP-NS 313
             +++   V+EA+ +F+RM ERDV++WT+M+ G + NG + +A  LF  M    V   N+
Sbjct: 199 TAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNT 258

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTI-KQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           + IG          Y +  R   A+ + +Q  E E+     +I  + +   ++ +   F 
Sbjct: 259 MIIG----------YAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFY 308

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQM-LVEVVEPNDATLNSLLPAYAILADLQ 431
           + S K  V W A+++G V +G + +A+++F +M     V+PN+ T  S+L A + LA L 
Sbjct: 309 KMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALC 368

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           +   IH  + +  +  V +V + LI++YSKCG LE A KIF +  I  +D+V W+ +IA 
Sbjct: 369 EGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAA 428

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           Y  HGHG  A+SLF EM   G +P+ VT+ + L ACSH GL+DEGL LF  ++ +     
Sbjct: 429 YAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKL 488

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
           R DH+TC+VDL GRAGRL EA+D I+ + +KP+ +VW ALL  C +HG+++LG++ A+ L
Sbjct: 489 REDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKL 548

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
            E EPEN G Y++LS +Y++  +W++A  VR  M +KGL+K P  S IEV N +
Sbjct: 549 LETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTV 602



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 200/441 (45%), Gaps = 63/441 (14%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++++  Y   G +     LF+ M ER+   +NTV+  + Q     ++ ++F    R+ E 
Sbjct: 164 NTMIEGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQELF---NRMPER 220

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRV--------------------LITGFDMDTF 147
           +  ++T  +             G++ +GR+                    +I G+  +  
Sbjct: 221 DVISWTTMVA------------GLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMR 268

Query: 148 VG-----------------NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           +                  N +I  ++  G+++ A   F  M   +VV+W  +ISG+ ++
Sbjct: 269 LDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQD 328

Query: 191 AYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
             ++EAL +F  M  +  V+P+  + VSVL AC  L  +  G+ IH++++     +    
Sbjct: 329 GRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADV 388

Query: 250 WNALVDMYVKCGSVNEARLVFD--RMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
            +AL++MY KCG +  AR +FD   +  RDVV+W  MI  YA +G    A+ LF  MQ  
Sbjct: 389 VSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQAL 448

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK-QNLECEVIVETALIDMYAKCNLVKL 366
           G RP+++T  +LLSACS    +  G  L    ++ ++++      T L+D++ +   ++ 
Sbjct: 449 GFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQE 508

Query: 367 SFQVFARTSKKKTVP-WNAILAGC-VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
           +F        K +   W A+LAGC VH  +     +L  + L+E    N  T   L   Y
Sbjct: 509 AFDFIKGLEVKPSASVWAALLAGCNVHGHI--DLGKLTAEKLLETEPENAGTYLVLSNIY 566

Query: 425 AILADLQQAMNIHCYLIRYGF 445
           A     ++A  +   +   G 
Sbjct: 567 ASTGKWREAAGVRMKMKDKGL 587



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 183/421 (43%), Gaps = 63/421 (14%)

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           N+A  N L+    K G + EAR VF+ M +RDVV+WT++I GY   G +  A  LF   +
Sbjct: 65  NVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFD--R 122

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLH---------AWT-----------IKQNL- 344
            + ++ N +T  +L+S       ++  R L          +W            I Q L 
Sbjct: 123 NDAIK-NVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWIDQALD 181

Query: 345 ------ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
                 E  V+    +I  + +   V  + ++F R  ++  + W  ++AG   NG    A
Sbjct: 182 LFEXMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDA 241

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
             LF +M V     N  + N+++  YA    L +A  +   +      S   + TG I  
Sbjct: 242 RLLFDKMPVR----NVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFI-- 295

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM-VQSGVQPNE 517
             + G LE A   F ++   +K++V W+ +I+G+   G  E A+ +F EM   + V+PNE
Sbjct: 296 --QNGKLERAVDFFYKMS--NKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNE 351

Query: 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR------ADHYTCIVDLLGRAGRLDE 571
            TF S L ACS    L EG  +       HQ  S+      AD  + ++++  + G L+ 
Sbjct: 352 GTFVSVLGACSKLAALCEGQQI-------HQIISKTVYQEVADVVSALINMYSKCGELEL 404

Query: 572 AYDLIRTMPLKPTHAV-WGALLGACVIHGNVELGEVAAKWLFELE-----PENPGNYVLL 625
           A  +     +     V W  ++ A   HG+   G  A     E++     P+N     LL
Sbjct: 405 ARKIFDDGSIGHRDVVSWNGMIAAYAHHGH---GHKAISLFDEMQALGFRPDNVTYIALL 461

Query: 626 S 626
           S
Sbjct: 462 S 462


>gi|242039301|ref|XP_002467045.1| hypothetical protein SORBIDRAFT_01g018760 [Sorghum bicolor]
 gi|241920899|gb|EER94043.1| hypothetical protein SORBIDRAFT_01g018760 [Sorghum bicolor]
          Length = 564

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 205/548 (37%), Positives = 306/548 (55%), Gaps = 17/548 (3%)

Query: 119 KACTDLAWRKLGIALHGRVLITGFD-MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           ++C      + G ALH R+L+TG     TF+ N LI MY    +  +A +VF  +   + 
Sbjct: 25  QSCGRTGDIRRGRALHARLLLTGAAATSTFLANHLITMYSYCADAASAVRVFGVLPRPNP 84

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSW TL+SG  +N+   +AL  F  M ++ V P   ++ S   A   L     G  +H +
Sbjct: 85  VSWTTLVSGLVQNSMHHDALAAFAAMRRAHVAPTQFALSSAARAAAALSAPRPGTQLHCI 144

Query: 238 VAGGRLGKNIAAWNA--LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
             G R G +   + A  L DMY KCG ++EA  VFD+M  RD VTWT+MI+GYA NG ++
Sbjct: 145 --GTRFGFDTELFVASNLADMYSKCGLLDEACRVFDQMPHRDAVTWTTMIDGYAKNGSLK 202

Query: 296 NALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
            A+  F+ M+ EG V  +     S LSA   L     GRSLH   IK   E E +V  AL
Sbjct: 203 AAILAFRDMKCEGLVGADQHVFCSALSASGGLKDGWFGRSLHCCIIKAGFELETVVRNAL 262

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWN-----AILAGCVHNGLARKAVELFRQMLVEV 409
           +DMYAK        +  +R  K     WN     +++ G +      +A+E + ++  + 
Sbjct: 263 LDMYAKSG----DLESASRVVKIDPGGWNVVSGTSLIDGYIEVDRIEEALETYTELGRQG 318

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           VEPN+ T  S++   A+   L+Q   +H  +I+   +S   V + L+ +Y KCG +  + 
Sbjct: 319 VEPNEFTFASMIKGCAMQDLLEQGAQLHAQVIKTSLISDSFVGSTLVYMYGKCGLISLSL 378

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
           ++F+EI    +  V W+ +I  Y  HGHG  A+  F  M  SG++PN +TF   L ACSH
Sbjct: 379 QLFNEIGYHSE--VAWNAVINVYAQHGHGWGAIQAFDRMTASGIRPNHITFVCLLTACSH 436

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
            GL+DEGL+ F  M + H    + +HY+CI+D+ GRAGRLDEA   I  MP+KP    W 
Sbjct: 437 AGLVDEGLEYFYSMKDAHGIEPKEEHYSCIIDMYGRAGRLDEAEKFISEMPVKPNAYGWC 496

Query: 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
           +LLGAC + GN ELGE+AA+ L +L+P+N G +V LS +Y+++ +W+DA++VR +M +  
Sbjct: 497 SLLGACRMRGNKELGEIAAQNLMKLDPDNTGIHVSLSGIYASLGQWEDAKSVRKLMKDSS 556

Query: 650 LRKAPAHS 657
           ++  P  S
Sbjct: 557 IKNLPGFS 564



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 145/489 (29%), Positives = 224/489 (45%), Gaps = 14/489 (2%)

Query: 21  QQYAATKSIAGTKQLHAFIITSGPLFTH--LRSSLVRAYGHVSN----VRILFDEMSERS 74
           Q    T  I   + LHA ++ +G   T   L + L+  Y + ++    VR+ F  +   +
Sbjct: 25  QSCGRTGDIRRGRALHARLLLTGAAATSTFLANHLITMYSYCADAASAVRV-FGVLPRPN 83

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
              + T++    QN   HD+L  F  M R     P  +      +A   L+  + G  LH
Sbjct: 84  PVSWTTLVSGLVQNSMHHDALAAFAAMRR-AHVAPTQFALSSAARAAAALSAPRPGTQLH 142

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
                 GFD + FV + L  MY   G +  A +VFD M     V+W T+I GY KN   K
Sbjct: 143 CIGTRFGFDTELFVASNLADMYSKCGLLDEACRVFDQMPHRDAVTWTTMIDGYAKNGSLK 202

Query: 195 EALVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
            A++ F  M   G V  D     S L A G LK+   GR +H  +            NAL
Sbjct: 203 AAILAFRDMKCEGLVGADQHVFCSALSASGGLKDGWFGRSLHCCIIKAGFELETVVRNAL 262

Query: 254 VDMYVKCGSVNEA-RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           +DMY K G +  A R+V       +VV+ TS+I+GY     +  AL  +  +  +GV PN
Sbjct: 263 LDMYAKSGDLESASRVVKIDPGGWNVVSGTSLIDGYIEVDRIEEALETYTELGRQGVEPN 322

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
             T  S++  C+    L++G  LHA  IK +L  +  V + L+ MY KC L+ LS Q+F 
Sbjct: 323 EFTFASMIKGCAMQDLLEQGAQLHAQVIKTSLISDSFVGSTLVYMYGKCGLISLSLQLFN 382

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
                  V WNA++     +G    A++ F +M    + PN  T   LL A +    + +
Sbjct: 383 EIGYHSEVAWNAVINVYAQHGHGWGAIQAFDRMTASGIRPNHITFVCLLTACSHAGLVDE 442

Query: 433 AMNIHCYLIR--YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
            +  + Y ++  +G     E  + +ID+Y + G L+ A K  SE+P+K  +   W  ++ 
Sbjct: 443 GLE-YFYSMKDAHGIEPKEEHYSCIIDMYGRAGRLDEAEKFISEMPVK-PNAYGWCSLLG 500

Query: 491 GYGMHGHGE 499
              M G+ E
Sbjct: 501 ACRMRGNKE 509


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 189/534 (35%), Positives = 303/534 (56%), Gaps = 57/534 (10%)

Query: 140 TGFDMDTFVGN-----CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
           T FD +  + N      L++ Y+ +  ++ AR++FDAM   +V+SWNT+I GY +  +  
Sbjct: 118 TLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNTMIEGYARKGWID 177

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           +AL +F+ M      P+                                 +N+ +WN ++
Sbjct: 178 QALDLFEKM------PE---------------------------------RNVVSWNTVI 198

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP-NS 313
             +++   V+EA+ +F+RM ERDV++WT+M+ G + NG + +A  LF  M    V   N+
Sbjct: 199 TAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNT 258

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTI-KQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           + IG          Y +  R   A+ + +Q  E E+     +I  + +   ++ +   F 
Sbjct: 259 MIIG----------YAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFY 308

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQM-LVEVVEPNDATLNSLLPAYAILADLQ 431
           + S K  V W A+++G V +G + +A+++F +M     V+PN+ T  S+L A + LA L 
Sbjct: 309 KMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALC 368

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           +   IH  + +  +  V +V + LI++YSKCG LE A KIF +  I  +D+V W+ +IA 
Sbjct: 369 EGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAA 428

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           Y  HGHG  A+SLF EM   G +P+ VT+ + L ACSH GL+DEGL LF  ++ +     
Sbjct: 429 YAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKL 488

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
           R DH+TC+VDL GRAGRL EA+D I+ + +KP+ +VW ALL  C +HG+++LG++ A+ L
Sbjct: 489 REDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLTAEKL 548

Query: 612 FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
            E EPEN G Y++LS +Y++  +W++A  VR  M +KGL+K P  S IEV N +
Sbjct: 549 LETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTV 602



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 201/441 (45%), Gaps = 63/441 (14%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++++  Y   G +     LF++M ER+   +NTV+  + Q     ++ ++F    R+ E 
Sbjct: 164 NTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELF---NRMPER 220

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRV--------------------LITGFDMDTF 147
           +  ++T  +             G++ +GR+                    +I G+  +  
Sbjct: 221 DVISWTTMVA------------GLSKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQNMR 268

Query: 148 VG-----------------NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           +                  N +I  ++  G+++ A   F  M   +VV+W  +ISG+ ++
Sbjct: 269 LDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGHVQD 328

Query: 191 AYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
             ++EAL +F  M  +  V+P+  + VSVL AC  L  +  G+ IH++++     +    
Sbjct: 329 GRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADV 388

Query: 250 WNALVDMYVKCGSVNEARLVFD--RMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
            +AL++MY KCG +  AR +FD   +  RDVV+W  MI  YA +G    A+ LF  MQ  
Sbjct: 389 VSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQAL 448

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK-QNLECEVIVETALIDMYAKCNLVKL 366
           G RP+++T  +LLSACS    +  G  L    ++ ++++      T L+D++ +   ++ 
Sbjct: 449 GFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQE 508

Query: 367 SFQVFARTSKKKTVP-WNAILAGC-VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
           +F        K +   W A+LAGC VH  +     +L  + L+E    N  T   L   Y
Sbjct: 509 AFDFIKGLEVKPSASVWAALLAGCNVHGHI--DLGKLTAEKLLETEPENAGTYLVLSNIY 566

Query: 425 AILADLQQAMNIHCYLIRYGF 445
           A     ++A  +   +   G 
Sbjct: 567 ASTGKWREAAGVRMKMKDKGL 587



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 184/421 (43%), Gaps = 63/421 (14%)

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           N+A  N L+    K G + EAR VF+ M +RDVV+WT++I GY   G +  A  LF   +
Sbjct: 65  NVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTLFD--R 122

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            + ++ N +T  +L+S       ++  R L      +N    VI    +I+ YA+   + 
Sbjct: 123 NDAIK-NVVTWTALVSGYVRWNRIEEARRLFDAMPVKN----VISWNTMIEGYARKGWID 177

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM----------LVEVVEPN-- 413
            +  +F +  ++  V WN ++   +      +A ELF +M          +V  +  N  
Sbjct: 178 QALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQELFNRMPERDVISWTTMVAGLSKNGR 237

Query: 414 --DATL-------------NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
             DA L             N+++  YA    L +A  +   +      S   + TG I  
Sbjct: 238 IDDARLLFDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFI-- 295

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM-VQSGVQPNE 517
             + G LE A   F ++   +K++V W+ +I+G+   G  E A+ +F EM   + V+PNE
Sbjct: 296 --QNGKLERAVDFFYKMS--NKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNE 351

Query: 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR------ADHYTCIVDLLGRAGRLDE 571
            TF S L ACS    L EG  +       HQ  S+      AD  + ++++  + G L+ 
Sbjct: 352 GTFVSVLGACSKLAALCEGQQI-------HQIISKTVYQEVADVVSALINMYSKCGELEL 404

Query: 572 AYDLIRTMPLKPTHAV-WGALLGACVIHGNVELGEVAAKWLFELE-----PENPGNYVLL 625
           A  +     +     V W  ++ A   HG+   G  A     E++     P+N     LL
Sbjct: 405 ARKIFDDGSIGHRDVVSWNGMIAAYAHHGH---GHKAISLFDEMQALGFRPDNVTYIALL 461

Query: 626 S 626
           S
Sbjct: 462 S 462


>gi|42563517|ref|NP_187185.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546760|sp|Q9MA85.2|PP215_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g05340
 gi|332640702|gb|AEE74223.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 658

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 192/516 (37%), Positives = 290/516 (56%), Gaps = 3/516 (0%)

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           V N L+++Y   G++  A K+FD M    V+S N +  G+ +N   +   V+   ML SG
Sbjct: 92  VWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLGSG 151

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
              D A++  VL  C   +   + +MIH L       K I+  N L+  Y KCG     R
Sbjct: 152 -GFDHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGR 210

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VFD MS R+V+T T++I+G   N    + L LF LM+   V PNS+T  S L+ACS   
Sbjct: 211 GVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQ 270

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            +  G+ +HA   K  +E E+ +E+AL+DMY+KC  ++ ++ +F  T++   V    IL 
Sbjct: 271 RIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILV 330

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G   NG   +A++ F +ML   VE +   ++++L    I   L     +H  +I+  F  
Sbjct: 331 GLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSG 390

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
              V+ GLI++YSKCG L  +  +F  +P   ++ V W+ +IA +  HGHG  A+ L++E
Sbjct: 391 NTFVNNGLINMYSKCGDLTDSQTVFRRMP--KRNYVSWNSMIAAFARHGHGLAALKLYEE 448

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M    V+P +VTF S LHACSH GL+D+G +L N M E H    R +HYTCI+D+LGRAG
Sbjct: 449 MTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAG 508

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
            L EA   I ++PLKP   +W ALLGAC  HG+ E+GE AA+ LF+  P++   ++L++ 
Sbjct: 509 LLKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFQTAPDSSSAHILIAN 568

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +YS+  +WK+       M   G+ K    S IE+ +
Sbjct: 569 IYSSRGKWKERAKTIKRMKAMGVTKETGISSIEIEH 604



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 216/462 (46%), Gaps = 4/462 (0%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           SL    G + +   LFDEM  R     N V   + +N  +     +   ML  G +  D+
Sbjct: 98  SLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLGSGGF--DH 155

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T  IV+  C    +  +   +H   +++G+D +  VGN LI  Y   G   + R VFD 
Sbjct: 156 ATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDG 215

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M   +V++   +ISG  +N   ++ L +F  M +  V P+  + +S L AC   + I  G
Sbjct: 216 MSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEG 275

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           + IH L+    +   +   +AL+DMY KCGS+ +A  +F+  +E D V+ T ++ G A N
Sbjct: 276 QQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQN 335

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G    A+  F  M   GV  ++  + ++L        L  G+ LH+  IK+       V 
Sbjct: 336 GSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVN 395

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
             LI+MY+KC  +  S  VF R  K+  V WN+++A    +G    A++L+ +M    V+
Sbjct: 396 NGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVK 455

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           P D T  SLL A + +  + +   +   +   +G     E  T +ID+  + G L+ A  
Sbjct: 456 PTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKS 515

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
               +P+K  D  +W  ++     HG  E      +++ Q+ 
Sbjct: 516 FIDSLPLK-PDCKIWQALLGACSFHGDTEVGEYAAEQLFQTA 556



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 168/354 (47%), Gaps = 5/354 (1%)

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           +  WN+L+ +Y KCG + +A  +FD M  RDV++   +  G+  N +  +   L + M  
Sbjct: 90  LVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLG 149

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
            G   ++ T+  +LS C +  +    + +HA  I    + E+ V   LI  Y KC     
Sbjct: 150 SGGFDHA-TLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVS 208

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
              VF   S +  +   A+++G + N L    + LF  M   +V PN  T  S L A + 
Sbjct: 209 GRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSG 268

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
              + +   IH  L +YG  S + + + L+D+YSKCGS+E A  IF      + D V  +
Sbjct: 269 SQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFES--TTEVDEVSMT 326

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
           VI+ G   +G  E A+  F  M+Q+GV+ +    ++ L        L  G  L + +++ 
Sbjct: 327 VILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKR 386

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             + +   +   ++++  + G L ++  + R MP K  +  W +++ A   HG+
Sbjct: 387 KFSGNTFVN-NGLINMYSKCGDLTDSQTVFRRMP-KRNYVSWNSMIAAFARHGH 438


>gi|39546235|emb|CAE04244.3| OSJNBa0089N06.5 [Oryza sativa Japonica Group]
 gi|125549842|gb|EAY95664.1| hypothetical protein OsI_17530 [Oryza sativa Indica Group]
 gi|215686910|dbj|BAG90780.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 559

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 192/554 (34%), Positives = 308/554 (55%), Gaps = 4/554 (0%)

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLI-TGFDMDTFVGNCLIAMYMNFGEVKAAR 166
            P    Y  +++ C      + G ++HGRV   +    D  +   L+  Y  FG+V AAR
Sbjct: 8   KPTAPLYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLVIFYARFGDVAAAR 67

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           KVFD M   SVVSW  ++SGY +N   +EAL +F  M  SG  P+  +  S   AC    
Sbjct: 68  KVFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAG 127

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
               G  +H   A GR   ++   +AL+DM+++CGSV +AR +F  M ++DVV+W ++I 
Sbjct: 128 CARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIR 187

Query: 287 GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346
           G+   G   +ALGLF  M  E + P+  T+GS L AC  +        +H+  IK     
Sbjct: 188 GFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLGYWD 247

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG-CVHNGLARKAVELFRQM 405
           E +V  +LI+ YAKC  +  +  ++   S+   V   A+++G  +    +  A+ELF ++
Sbjct: 248 EKVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMELFCKI 307

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
             + +  +   L+S+L   A +A  +    IH Y+ +   +  + +   L+D+Y+K G  
Sbjct: 308 HRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNALVDMYAKAGEF 367

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
             A + F E+P ++  ++ W+ +I   G +G GE AV+LF  MV+ GV+PN+VTF S L 
Sbjct: 368 SDAKRAFDEMPYRN--VISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLS 425

Query: 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           AC H GL ++G++ F  M+  +    RA+HY+  +DLL R G+L++A+ L++   LKP  
Sbjct: 426 ACGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNS 485

Query: 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645
           ++ GA+LGAC +HGN+ LGE AAK LF ++P +  NY +L+ +Y+    W+DA+  R+V+
Sbjct: 486 SMLGAMLGACKLHGNMLLGETAAKNLFSIDPGSSVNYAVLANMYAECSLWEDAQRTREVI 545

Query: 646 DEKGLRKAPAHSLI 659
           DE    K    S+I
Sbjct: 546 DETTDGKEVGFSVI 559



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 148/528 (28%), Positives = 258/528 (48%), Gaps = 15/528 (2%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFII--TSGPLFTHLRSSLVRAY---GHVSNVRIL 66
           T  L   L+Q   ++ +    K +H  +   ++ P   HL + LV  Y   G V+  R +
Sbjct: 10  TAPLYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLVIFYARFGDVAAARKV 69

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           FD M  RS   +  ++  YA+NG   ++L++F  ++R     P+ +TY     AC     
Sbjct: 70  FDGMPHRSVVSWTAMVSGYARNGRPREALELF-ALMRASGARPNQFTYGSAASACAGAGC 128

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
            + G  +H       F  D FV + L+ M++  G V+ AR++F  M +  VVSWN LI G
Sbjct: 129 ARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRG 188

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
           + +  +  +AL +F  MLK  + PD  ++ S L ACG +       +IH  +        
Sbjct: 189 FVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLGYWDE 248

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV-RNALGLFQLMQ 305
                +L++ Y KC S++ AR+++D +SE D+V+ T++I+GY ++ +   +A+ LF  + 
Sbjct: 249 KVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMELFCKIH 308

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            +G+  + + + S+L  C+S+   + G  +HA+  K+    ++ ++ AL+DMYAK     
Sbjct: 309 RKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNALVDMYAKAGEFS 368

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + + F     +  + W +++  C  NG    AV LF +M+ + V PND T  SLL A  
Sbjct: 369 DAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACG 428

Query: 426 ILADLQQAMNIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
                 + M     ++ RYG     E  +  ID+ ++ G LE A K+  +  +K    ++
Sbjct: 429 HCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNSSML 488

Query: 485 WSVIIAGYGMHGH---GETAV-SLFKEMVQSGVQPNEVTFTSALHACS 528
              ++    +HG+   GETA  +LF   +  G   N     +    CS
Sbjct: 489 -GAMLGACKLHGNMLLGETAAKNLFS--IDPGSSVNYAVLANMYAECS 533



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 109/221 (49%), Gaps = 3/221 (1%)

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE-CEVIVETALIDMYAKCNLVKL 366
           G +P +    SLL  C S    ++G+S+H      +    ++ + T L+  YA+   V  
Sbjct: 6   GAKPTAPLYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLVIFYARFGDVAA 65

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           + +VF     +  V W A+++G   NG  R+A+ELF  M      PN  T  S   A A 
Sbjct: 66  ARKVFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAG 125

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
               +    +H    +  F   + V + L+D++ +CGS+E A ++F+E  +  KD+V W+
Sbjct: 126 AGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAE--MGKKDVVSWN 183

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
            +I G+   GH   A+ LF  M++  + P+  T  SAL AC
Sbjct: 184 ALIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKAC 224


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 192/552 (34%), Positives = 299/552 (54%), Gaps = 41/552 (7%)

Query: 142 FDMDTFVGNC--LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
           F +D  V  C  +I      G +  AR++FD M E  V++W T+ISGY K    +EA  +
Sbjct: 46  FTVDGNVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRL 105

Query: 200 FD----------WM------LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243
           FD          W       ++S    D   + + +P       +    MI      GR+
Sbjct: 106 FDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNV---VSWNTMIDGYAQNGRI 162

Query: 244 G-----------KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
                       +N+ +WN ++ M  +CG + EAR +FDRM ERDV++WT+MI G + NG
Sbjct: 163 DSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLSKNG 222

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVET 352
            +  A  LF  M       N ++  ++++  +    L     L     +++L     + T
Sbjct: 223 RIDEARLLFDRMP----ERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMIT 278

Query: 353 ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML-VEVVE 411
            LI    +   ++ + ++F    KK  + W  ++ GCV  G + +A+++F +ML     +
Sbjct: 279 GLI----QNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAK 334

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           PN  T  S+L A + LA L +   +H  + +  +     V + LI++YSKCG L +A K+
Sbjct: 335 PNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKM 394

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F +     +D+V W+ IIA Y  HG+G+ A++ FKEM +SG +P++VT+   L ACSH G
Sbjct: 395 FDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAG 454

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
           L++EGL  F+ ++++     R DHY C+VDL GRAGRL EA+  I  +  KP+  VWGAL
Sbjct: 455 LVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGAL 514

Query: 592 LGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651
           L  C +H NV++G+ AAK L E+EPEN G Y+LLS +Y++  +W++A  VR  M +KGL+
Sbjct: 515 LAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLK 574

Query: 652 KAPAHSLIEVRN 663
           K P  S IEV N
Sbjct: 575 KQPGCSWIEVGN 586



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 128/509 (25%), Positives = 226/509 (44%), Gaps = 95/509 (18%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G + +   LF++M ER+   +NTVM M AQ G   ++ ++F    R+ E +  ++T  I 
Sbjct: 160 GRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRIEEARRLF---DRMPERDVISWTAMIA 216

Query: 118 IKACTDLAWRKLGIALHGRV--------------------LITGF--------------- 142
                       G++ +GR+                    +ITG+               
Sbjct: 217 ------------GLSKNGRIDEARLLFDRMPERNVVSWNAMITGYAQNLRLDEALDLFER 264

Query: 143 --DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
             + D    N +I   +  G+++ ARK+F+ M + +V+SW T+I+G  +   ++EAL +F
Sbjct: 265 MPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEGESEEALKIF 324

Query: 201 DWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVK 259
             ML + G +P+  + VSVL AC  L  +  G+ +H++++      +    +AL++MY K
Sbjct: 325 SRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSK 384

Query: 260 CGSVNEARLVFDR--MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
           CG +  AR +FD    S+RD+V+W  +I  YA +G  + A+  F+ M+  G +P+ +T  
Sbjct: 385 CGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYV 444

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE----TALIDMYAKCNLVKLSFQVFAR 373
            LLSACS    ++ G       +K      ++V       L+D+  +   +K +F    R
Sbjct: 445 GLLSACSHAGLVEEGLKYFDELVKDR---SILVREDHYACLVDLCGRAGRLKEAFGFIER 501

Query: 374 TSKKKTVP-WNAILAGC-VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
              K +   W A+LAGC VH  +  K  +   + L+EV   N  T   L   YA     +
Sbjct: 502 LETKPSARVWGALLAGCNVHANV--KIGKQAAKKLLEVEPENAGTYLLLSNIYASTGKWR 559

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           +A  +   +   G           +     C  +E  +++               V + G
Sbjct: 560 EAARVRLKMKDKG-----------LKKQPGCSWIEVGNRVH--------------VFVVG 594

Query: 492 YGMHGHGETAVSLFKE----MVQSGVQPN 516
              H   +   SL ++    M ++G +PN
Sbjct: 595 DKSHSQSKLIYSLLRDLHSKMKKAGYEPN 623


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 207/638 (32%), Positives = 341/638 (53%), Gaps = 14/638 (2%)

Query: 33  KQLHAFIITSG--PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           +QLH   +  G       + ++LV  Y   G V + R++F+ M +R+   + +++  Y Q
Sbjct: 119 EQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQ 178

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
             A  D + +F  M   G + P+ +T+  V+ A        LG  +H + +  G     F
Sbjct: 179 GRACSDVMALFFRMRAEGVW-PNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVF 237

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           V N LI MY   G V+ A+ VF  M    +VSWNTL++G   N +  EAL +F     S 
Sbjct: 238 VCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASM 297

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
            +   ++  +V+  C  LK++ + R +H  V       +     A++D Y KCG +++A 
Sbjct: 298 AKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAF 357

Query: 268 LVFDRM-SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
            +F  M   ++VV+WT+MI G   N D+  A  LF  M+ + V+PN  T  ++L+A   +
Sbjct: 358 NIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPI 417

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
              +    +HA  IK N +    V TAL+  Y+K    + +  +F     K  V W+A+L
Sbjct: 418 LLPQ----IHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAML 473

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA-ILADLQQAMNIHCYLIRYGF 445
           +     G    A  +F +M ++ ++PN+ T++S + A A   A + Q    H   I+Y +
Sbjct: 474 SCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRY 533

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLF 505
              + V + L+ +Y++ GS++SA  +F      D+D+V W+ +I+GY  HG+ + A+  F
Sbjct: 534 QDAICVGSALVTMYARKGSIDSARIVFERQ--TDRDLVSWNSMISGYAQHGYSKEALDTF 591

Query: 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565
           ++M   G++ +  TF + +  C+H GL+ EG   F+ M+ +H      +HY+C+VDL  R
Sbjct: 592 RQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSR 651

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           AG+LDE  +LI  MP      VW  LLGAC +H NVELG++AA+ L  LEP++   YVLL
Sbjct: 652 AGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLL 711

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           S +Y+A  RWK+ + VR +MD K ++K    S I+++N
Sbjct: 712 SNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKN 749


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 187/571 (32%), Positives = 317/571 (55%), Gaps = 42/571 (7%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYM---NFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           +H +++ TG     +  + LI   +   +F  +  A  VF+ + E +++ WNT+  G+  
Sbjct: 21  IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 80

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           ++    AL ++  M+  G+ P+C +   +L +C   K    G+ IH  V   +LG ++  
Sbjct: 81  SSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVL--KLGYDLDL 138

Query: 250 W--NALVDMYVKCGSVNEARLVFDRMSERDVVT--------------------------- 280
           +   +L+ MYV+ G + +AR VFD+ S RDVV+                           
Sbjct: 139 YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIK 198

Query: 281 ----WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH 336
               W +MI+GYA  G+ + AL LF+ M    VRP+  T+ S++SAC+    ++ GR +H
Sbjct: 199 DVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVH 258

Query: 337 AWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLAR 396
           +W         + +  ALID+Y KC  V+ +  +F   S K  + WN ++ G  H  L +
Sbjct: 259 SWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYK 318

Query: 397 KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY--GFLSVVEVSTG 454
           +A+ LF++ML     PND T+ S+LPA A L  ++    IH Y+ +   G  +     T 
Sbjct: 319 EALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTS 378

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           LID+Y+KCG +E+A ++F  I   ++ +  W+ +I G+ MHG    A  +F  M ++ ++
Sbjct: 379 LIDMYAKCGDIEAAQQVFDSI--LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIE 436

Query: 515 PNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYD 574
           P+++TF   L ACSH G+LD G  +F  M E+++   + +HY C++DLLG +G   EA +
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEE 496

Query: 575 LIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRR 634
           +I TM ++P   +W +LL AC ++ NVELGE  A+ L ++EP+NPG+YVLLS +Y+   R
Sbjct: 497 MINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGR 556

Query: 635 WKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           W +   +R ++++KG++K P  S IE+ +++
Sbjct: 557 WNEVAKIRALLNDKGMKKVPGCSSIEIDSVV 587



 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 147/484 (30%), Positives = 250/484 (51%), Gaps = 38/484 (7%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F+ + E +  ++NT+ + +A +     +L +++ M+ LG   P+ YT+P ++K+C    
Sbjct: 59  VFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLL-PNCYTFPFLLKSCAKSK 117

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA-------------- 171
             + G  +HG VL  G+D+D +V   LI+MY+  G ++ ARKVFD               
Sbjct: 118 AFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIT 177

Query: 172 -------------MWEH----SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
                        M++      VVSWN +ISGY +    KEAL +F  M+K+ V PD ++
Sbjct: 178 GYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDEST 237

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           +VSV+ AC     IE+GR +H  +     G N+   NAL+D+Y+KCG V  A  +F+ +S
Sbjct: 238 MVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLS 297

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
            +DV++W ++I GY      + AL LFQ M   G  PN +T+ S+L AC+ L  ++ GR 
Sbjct: 298 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRW 357

Query: 335 LHAWTIK--QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           +H +  K  + +       T+LIDMYAKC  ++ + QVF     +    WNA++ G   +
Sbjct: 358 IHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMH 417

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEV 451
           G A  A ++F +M    +EP+D T   LL A +    L    +I   +   Y     +E 
Sbjct: 418 GRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEH 477

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
              +ID+    G  + A ++ + + + + D V+W  ++    M+ + E   S  + +++ 
Sbjct: 478 YGCMIDLLGHSGLFKEAEEMINTMEM-EPDGVIWCSLLKACKMYANVELGESYAQNLIK- 535

Query: 512 GVQP 515
            ++P
Sbjct: 536 -IEP 538



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/415 (29%), Positives = 209/415 (50%), Gaps = 11/415 (2%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++L+  Y   G++++ + +FDE+  +    +N ++  YA+ G + ++L++F  M++    
Sbjct: 173 TALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTN-V 231

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PD  T   V+ AC   A  +LG  +H  +   GF  +  + N LI +Y+  GEV+ A  
Sbjct: 232 RPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACG 291

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F+ +    V+SWNTLI GY      KEAL++F  ML+SG  P+  +++S+LPAC +L  
Sbjct: 292 LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGA 351

Query: 228 IEMGRMIHELVAGGRLGKNIAAWN--ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           IE+GR IH  +     G   A+ +  +L+DMY KCG +  A+ VFD +  R + +W +MI
Sbjct: 352 IEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMI 411

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
            G+A++G    A  +F  M+   + P+ +T   LLSACS    L  GR +   ++K++ +
Sbjct: 412 FGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFR-SMKEDYK 470

Query: 346 CEVIVE--TALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELF 402
               +E    +ID+     L K + ++      +   V W ++L  C          E +
Sbjct: 471 ITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELG-ESY 529

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
            Q L+++   N  +   L   YA      +   I   L   G   V   S+  ID
Sbjct: 530 AQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEID 584


>gi|357165628|ref|XP_003580444.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Brachypodium distachyon]
          Length = 779

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 213/634 (33%), Positives = 353/634 (55%), Gaps = 27/634 (4%)

Query: 49  LRSSLVRAY--------GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLG 100
           LR+SL+  Y        G V  VR LFD   +R+   +NT++  Y + G  +++L+MF+ 
Sbjct: 139 LRNSLLNLYASCARYRHGGVDVVRRLFDATPKRNVVSWNTLVGWYVKTGRPYEALEMFMR 198

Query: 101 MLRLG-EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDM--DTFVGNCLIAMYM 157
           ML  G    P ++       A  D +W      L+G ++  G +   D FV +  IAM+ 
Sbjct: 199 MLEDGIRPTPVSFVNVFPAAASDDPSWPFF---LYGMLIKHGVEYVSDLFVVSSAIAMFS 255

Query: 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS-GVEPDCASVV 216
             G+V++AR VFD   + ++  WNT+I+GY +N    EA+ +F  ++ S GV  D  + +
Sbjct: 256 EIGDVQSARMVFDHAAKKNIEVWNTMITGYVQNGQFSEAMDLFIQIMGSKGVPLDVVTFL 315

Query: 217 SVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE 275
           S + A    ++ ++G+ +H  L+ G R    +   NALV MY +CG+V+ A  +FD++ E
Sbjct: 316 SAITAASQSQDGKLGQQLHGYLMKGMRSTLPVILGNALVVMYSRCGNVHAAFDLFDQLPE 375

Query: 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
           +D+V+W +M+  +  N      L L   M   G   +++T+ ++LSA S+   L+ G+  
Sbjct: 376 KDIVSWNTMVTAFVQNDFDFEGLLLVYQMHKSGFVADAVTLTAVLSAASNTGDLQIGKQS 435

Query: 336 HAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF-ARTSKKKTVPWNAILAGCVHNGL 394
           H + I+  +E E + E+ LI+MY+K   + ++ +VF    + +  V WNA++AG   +G 
Sbjct: 436 HGYLIRHGIEGEGL-ESYLINMYSKSGHIDMAQRVFDGYGNDRDEVTWNAMIAGYTQSGQ 494

Query: 395 ARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD-LQQAMNIHCYLIRYGFLSVVEVST 453
             +AV  FR M+   VEP   TL S+LPA   + + +Q    IH + +R+   + + V T
Sbjct: 495 PEQAVLAFRAMVEAGVEPTSVTLASVLPACEPVGEGVQAGKQIHSFALRHSLDTNIFVGT 554

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            L+D+YSKCG + +A  +F  +   +K  V ++ +I+G G HG G+ A+ LF  M  +G+
Sbjct: 555 ALVDMYSKCGEITAAENVFDRM--TEKSTVTYTTMISGLGQHGFGDRALFLFYSMQDNGL 612

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
           +P+ VTF +A+ AC++ GL+DEGL L+  M E     +   H+ CIVDLL +AGR++EAY
Sbjct: 613 KPDAVTFLAAISACNYSGLVDEGLSLYRSM-ETFGLSATPQHHCCIVDLLAKAGRVEEAY 671

Query: 574 DLIRTMPLKPTH-AVWGALLGACVIHGNVELGEVAAKWLFELEPE----NPGNYVLLSKL 628
           D + ++       A+WG+LL +C   G  EL       L  +E +    + G  VLLS+L
Sbjct: 672 DFVESLGEDGNFIAIWGSLLASCKAQGKQELTAFVTDKLLNIEKQYGHAHAGYNVLLSQL 731

Query: 629 YSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           ++A   W  A+++R  M  +GLRK    S I+V+
Sbjct: 732 FAAEGNWSSADSLRREMRVRGLRKDVGSSWIKVQ 765



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 165/535 (30%), Positives = 258/535 (48%), Gaps = 17/535 (3%)

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNP---DNYTYPIVIKA 120
           R+L D +      L   V+ +    GA  D      G+L      P   D+YTY   + A
Sbjct: 50  RLLLDALPRPPPTLLCNVLLIAYVAGALPDHALGLYGVLNHAARPPPRSDHYTYSCALTA 109

Query: 121 CTDLAWRKLGIALHGRVLITGFDM-DTFV-GNCLIAMYMN-----FGEVKAARKVFDAMW 173
           C      +LG ++H  +L     + DT V  N L+ +Y +      G V   R++FDA  
Sbjct: 110 CARSRRLRLGRSVHAHLLRRARSLPDTAVLRNSLLNLYASCARYRHGGVDVVRRLFDATP 169

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
           + +VVSWNTL+  Y K     EAL +F  ML+ G+ P   S V+V PA           +
Sbjct: 170 KRNVVSWNTLVGWYVKTGRPYEALEMFMRMLEDGIRPTPVSFVNVFPAAASDDPSWPFFL 229

Query: 234 IHELVAGG-RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
              L+  G     ++   ++ + M+ + G V  AR+VFD  +++++  W +MI GY  NG
Sbjct: 230 YGMLIKHGVEYVSDLFVVSSAIAMFSEIGDVQSARMVFDHAAKKNIEVWNTMITGYVQNG 289

Query: 293 DVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK-QNLECEVIV 350
               A+ LF Q+M  +GV  + +T  S ++A S     K G+ LH + +K       VI+
Sbjct: 290 QFSEAMDLFIQIMGSKGVPLDVVTFLSAITAASQSQDGKLGQQLHGYLMKGMRSTLPVIL 349

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
             AL+ MY++C  V  +F +F +  +K  V WN ++   V N    + + L  QM     
Sbjct: 350 GNALVVMYSRCGNVHAAFDLFDQLPEKDIVSWNTMVTAFVQNDFDFEGLLLVYQMHKSGF 409

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
             +  TL ++L A +   DLQ     H YLIR+G +    + + LI++YSK G ++ A +
Sbjct: 410 VADAVTLTAVLSAASNTGDLQIGKQSHGYLIRHG-IEGEGLESYLINMYSKSGHIDMAQR 468

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH- 529
           +F      D+D V W+ +IAGY   G  E AV  F+ MV++GV+P  VT  S L AC   
Sbjct: 469 VFDGYG-NDRDEVTWNAMIAGYTQSGQPEQAVLAFRAMVEAGVEPTSVTLASVLPACEPV 527

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
           G  +  G  + +F L  H   +     T +VD+  + G +  A ++   M  K T
Sbjct: 528 GEGVQAGKQIHSFALR-HSLDTNIFVGTALVDMYSKCGEITAAENVFDRMTEKST 581



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 194/381 (50%), Gaps = 13/381 (3%)

Query: 24  AATKSIAGT--KQLHAFIITS--GPLFTHLRSSLVRAYGHVSNVRI---LFDEMSERSSF 76
           AA++S  G   +QLH +++      L   L ++LV  Y    NV     LFD++ E+   
Sbjct: 320 AASQSQDGKLGQQLHGYLMKGMRSTLPVILGNALVVMYSRCGNVHAAFDLFDQLPEKDIV 379

Query: 77  LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGR 136
            +NT++  + QN    + L +   M + G +  D  T   V+ A ++    ++G   HG 
Sbjct: 380 SWNTMVTAFVQNDFDFEGLLLVYQMHKSG-FVADAVTLTAVLSAASNTGDLQIGKQSHGY 438

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW-EHSVVSWNTLISGYFKNAYAKE 195
           ++  G + +  + + LI MY   G +  A++VFD    +   V+WN +I+GY ++   ++
Sbjct: 439 LIRHGIEGEG-LESYLINMYSKSGHIDMAQRVFDGYGNDRDEVTWNAMIAGYTQSGQPEQ 497

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKE-IEMGRMIHELVAGGRLGKNIAAWNALV 254
           A++ F  M+++GVEP   ++ SVLPAC  + E ++ G+ IH       L  NI    ALV
Sbjct: 498 AVLAFRAMVEAGVEPTSVTLASVLPACEPVGEGVQAGKQIHSFALRHSLDTNIFVGTALV 557

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           DMY KCG +  A  VFDRM+E+  VT+T+MI+G   +G    AL LF  MQ  G++P+++
Sbjct: 558 DMYSKCGEITAAENVFDRMTEKSTVTYTTMISGLGQHGFGDRALFLFYSMQDNGLKPDAV 617

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T  + +SAC+    +  G SL+       L         ++D+ AK   V+ ++      
Sbjct: 618 TFLAAISACNYSGLVDEGLSLYRSMETFGLSATPQHHCCIVDLLAKAGRVEEAYDFVESL 677

Query: 375 SKKKT--VPWNAILAGCVHNG 393
            +       W ++LA C   G
Sbjct: 678 GEDGNFIAIWGSLLASCKAQG 698


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 189/587 (32%), Positives = 317/587 (54%), Gaps = 7/587 (1%)

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
           N ++  Y   G     LK F+ M+   +   D  T+ +V+     L    LG  +H   L
Sbjct: 291 NKILSGYLHAGQYSALLKCFMDMVE-SDLECDQVTFILVLATAVRLDSLALGQQVHCMAL 349

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
             G D+   V N LI MY    ++  AR VF+ M E  ++SWN++I+G  ++    EA+ 
Sbjct: 350 KLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVC 409

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKE-IEMGRMIH-ELVAGGRLGKNIAAWNALVDM 256
           +F  +L+ G++PD  ++ SVL A   L E + + + IH   +    +  +  +  AL+D 
Sbjct: 410 LFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVS-TALIDA 468

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y +   + EA ++F R +  D+V W +M++GY  + D    L LF LM  +G R +  T+
Sbjct: 469 YSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTL 527

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
            ++L  C  L+ + +G+ +HA+ IK   + ++ V + ++DMY KC  +  +   F     
Sbjct: 528 ATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPV 587

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
              V W  +++GC+ NG   +A+ +F QM +  V P++ T+ +L  A + L  L+Q   I
Sbjct: 588 PDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQI 647

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H   ++    S   V T L+D+Y+KCGS++ A+ +F  I + +  I  W+ ++ G   HG
Sbjct: 648 HANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMN--ITAWNAMLVGLAQHG 705

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
            G+ A+ LFK+M   G++P++VTF   L ACSH GL+ E       M  ++      +HY
Sbjct: 706 EGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHY 765

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
           +C+ D LGRAG + EA +LI +M ++ + +++  LL AC + G+ E G+  A  L ELEP
Sbjct: 766 SCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEP 825

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            +   YVLLS +Y+A  +W + +  R +M    ++K P  S IEV+N
Sbjct: 826 LDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKN 872



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 145/496 (29%), Positives = 248/496 (50%), Gaps = 23/496 (4%)

Query: 28  SIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMK 83
           S+A  +Q+H   +  G  L   + +SL+  Y  +  +   R +F+ MSER    +N+V+ 
Sbjct: 337 SLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIA 396

Query: 84  MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA-WRKLGIALHGRVLITGF 142
             AQ+    +++ +F+ +LR G   PD+YT   V+KA + L     L   +H   + T  
Sbjct: 397 GIAQSDLEVEAVCLFMQLLRCG-LKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNN 455

Query: 143 DMDTFVGNCLIAMY-----MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
             D+FV   LI  Y     M   EV   R  FD      +V+WN ++SGY ++    + L
Sbjct: 456 VADSFVSTALIDAYSRNRCMKEAEVLFGRNNFD------LVAWNAMMSGYTQSHDGHKTL 509

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW--NALVD 255
            +F  M K G   D  ++ +VL  CG+L  I  G+ +H      + G ++  W  + ++D
Sbjct: 510 ELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAI--KSGYDLDLWVSSGILD 567

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           MYVKCG ++ A+  FD +   D V WT++I+G   NG+   AL +F  M+  GV P+  T
Sbjct: 568 MYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFT 627

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
           I +L  A S L  L++GR +HA  +K N   +  V T+L+DMYAKC  +  ++ +F R  
Sbjct: 628 IATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIE 687

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
                 WNA+L G   +G  ++A++LF+QM    ++P+  T   +L A +    + +A  
Sbjct: 688 MMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYK 747

Query: 436 -IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            I      YG    +E  + L D   + G ++ A  +   + + +    ++  ++A   +
Sbjct: 748 YIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSM-EASASMYRTLLAACRV 806

Query: 495 HGHGETAVSLFKEMVQ 510
            G  ET   +  ++++
Sbjct: 807 QGDTETGKRVATKLLE 822



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 155/546 (28%), Positives = 262/546 (47%), Gaps = 43/546 (7%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +G V   R+LF+EM  R   L+N ++K Y + G   +++ +       G  +P+  T  +
Sbjct: 200 FGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSG-LHPNEITLRL 258

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           + +                   I+G D +              G+VK+     DA     
Sbjct: 259 LSR-------------------ISGDDSEA-------------GQVKSFENGNDASAVSE 286

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           ++S N ++SGY         L  F  M++S +E D  + + VL     L  + +G+ +H 
Sbjct: 287 IISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHC 346

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
           +     L   +   N+L++MY K   +  AR VF+ MSERD+++W S+I G A +     
Sbjct: 347 MALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVE 406

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY-LKRGRSLHAWTIKQNLECEVIVETALI 355
           A+ LF  +   G++P+  T+ S+L A SSL   L   + +H   IK N   +  V TALI
Sbjct: 407 AVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALI 466

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
           D Y++   +K +  +F R +    V WNA+++G   +    K +ELF  M  +    +D 
Sbjct: 467 DAYSRNRCMKEAEVLFGRNN-FDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDF 525

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
           TL ++L     L  + Q   +H Y I+ G+   + VS+G++D+Y KCG + +A   F  I
Sbjct: 526 TLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSI 585

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
           P+ D   V W+ +I+G   +G  E A+ +F +M   GV P+E T  +   A S    L++
Sbjct: 586 PVPDD--VAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQ 643

Query: 536 GLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
           G  +    L+ + T   +D +  T +VD+  + G +D+AY L + + +    A W A+L 
Sbjct: 644 GRQIHANALKLNCT---SDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITA-WNAMLV 699

Query: 594 ACVIHG 599
               HG
Sbjct: 700 GLAQHG 705



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 135/558 (24%), Positives = 250/558 (44%), Gaps = 46/558 (8%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN--GASHDSLKMFL--GMLRLGEY 107
           S+    G ++  R +FD+M ER    +N+++  YAQ+  G   +  + FL   +LR    
Sbjct: 89  SMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVV 148

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
                T   ++K C    +     + HG     G D D FV   L+ +Y+ FG+VK  R 
Sbjct: 149 YTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRV 208

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F+ M    VV WN ++  Y +  + +EA+ +      SG+ P+               E
Sbjct: 209 LFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPN---------------E 253

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           I +           RL   I+  ++      + G V       D  +  ++++   +++G
Sbjct: 254 ITL-----------RLLSRISGDDS------EAGQVKSFENGNDASAVSEIISRNKILSG 296

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y   G     L  F  M    +  + +T   +L+    L  L  G+ +H   +K  L+  
Sbjct: 297 YLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLM 356

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           + V  +LI+MY K   + L+  VF   S++  + WN+++AG   + L  +AV LF Q+L 
Sbjct: 357 LTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLR 416

Query: 408 EVVEPNDATLNSLLPAYAILAD-LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
             ++P+  T+ S+L A + L + L  +  IH + I+   ++   VST LID YS+   ++
Sbjct: 417 CGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMK 476

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
            A  +F      + D+V W+ +++GY     G   + LF  M + G + ++ T  + L  
Sbjct: 477 EAEVLFGR---NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKT 533

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTC--IVDLLGRAGRLDEAYDLIRTMPLKPT 584
           C     +++G  +  + +++       D +    I+D+  + G +  A     ++P+ P 
Sbjct: 534 CGFLFAINQGKQVHAYAIKSGYD---LDLWVSSGILDMYVKCGDMSAAQFAFDSIPV-PD 589

Query: 585 HAVWGALLGACVIHGNVE 602
              W  L+  C+ +G  E
Sbjct: 590 DVAWTTLISGCIENGEEE 607



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 127/275 (46%), Gaps = 39/275 (14%)

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD-----VRNALGLFQLMQ 305
           N L+ MY KCGS+  AR VFD+M ERD+V+W S++  YA + +     V+ A  LF++++
Sbjct: 85  NNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILR 144

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            + V  + +T+  +L  C    Y+    S H +  K  L+ +  V  AL+++Y K   VK
Sbjct: 145 QDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVK 204

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
               +F     +  V WN +L   +  G   +A++L        + PN+ TL  L     
Sbjct: 205 EGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLL---SR 261

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
           I  D  +A  +  +                     + G+  SA    SEI  ++K     
Sbjct: 262 ISGDDSEAGQVKSF---------------------ENGNDASA---VSEIISRNK----- 292

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
             I++GY   G     +  F +MV+S ++ ++VTF
Sbjct: 293 --ILSGYLHAGQYSALLKCFMDMVESDLECDQVTF 325



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 95/196 (48%), Gaps = 11/196 (5%)

Query: 332 GRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA---- 387
           G+  HA  +      E  +   LI MY+KC  +  + +VF +  ++  V WN+ILA    
Sbjct: 65  GKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQ 124

Query: 388 ---GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
              G V N   ++A  LFR +  +VV  +  TL+ +L        +  + + H Y  + G
Sbjct: 125 SSEGVVEN--VKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIG 182

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
                 V+  L++IY K G ++    +F E+P   +D+V+W++++  Y   G  E A+ L
Sbjct: 183 LDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPY--RDVVLWNLMLKAYLEMGFKEEAIDL 240

Query: 505 FKEMVQSGVQPNEVTF 520
                 SG+ PNE+T 
Sbjct: 241 SSAFHTSGLHPNEITL 256



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 7/82 (8%)

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG-----ETAVSLFKEMV 509
           LI +YSKCGSL  A ++F ++P  ++D+V W+ I+A Y     G     + A  LF+ + 
Sbjct: 87  LISMYSKCGSLTYARRVFDKMP--ERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILR 144

Query: 510 QSGVQPNEVTFTSALHACSHGG 531
           Q  V  + +T +  L  C H G
Sbjct: 145 QDVVYTSRMTLSPMLKLCLHSG 166


>gi|6729044|gb|AAF27040.1|AC009177_30 hypothetical protein [Arabidopsis thaliana]
          Length = 770

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 192/516 (37%), Positives = 290/516 (56%), Gaps = 3/516 (0%)

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           V N L+++Y   G++  A K+FD M    V+S N +  G+ +N   +   V+   ML SG
Sbjct: 92  VWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLGSG 151

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
              D A++  VL  C   +   + +MIH L       K I+  N L+  Y KCG     R
Sbjct: 152 -GFDHATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGR 210

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VFD MS R+V+T T++I+G   N    + L LF LM+   V PNS+T  S L+ACS   
Sbjct: 211 GVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQ 270

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            +  G+ +HA   K  +E E+ +E+AL+DMY+KC  ++ ++ +F  T++   V    IL 
Sbjct: 271 RIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILV 330

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G   NG   +A++ F +ML   VE +   ++++L    I   L     +H  +I+  F  
Sbjct: 331 GLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSG 390

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
              V+ GLI++YSKCG L  +  +F  +P   ++ V W+ +IA +  HGHG  A+ L++E
Sbjct: 391 NTFVNNGLINMYSKCGDLTDSQTVFRRMP--KRNYVSWNSMIAAFARHGHGLAALKLYEE 448

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M    V+P +VTF S LHACSH GL+D+G +L N M E H    R +HYTCI+D+LGRAG
Sbjct: 449 MTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAG 508

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
            L EA   I ++PLKP   +W ALLGAC  HG+ E+GE AA+ LF+  P++   ++L++ 
Sbjct: 509 LLKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAEQLFQTAPDSSSAHILIAN 568

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +YS+  +WK+       M   G+ K    S IE+ +
Sbjct: 569 IYSSRGKWKERAKTIKRMKAMGVTKETGISSIEIEH 604



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 216/462 (46%), Gaps = 4/462 (0%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           SL    G + +   LFDEM  R     N V   + +N  +     +   ML  G +  D+
Sbjct: 98  SLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLGSGGF--DH 155

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T  IV+  C    +  +   +H   +++G+D +  VGN LI  Y   G   + R VFD 
Sbjct: 156 ATLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVSGRGVFDG 215

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M   +V++   +ISG  +N   ++ L +F  M +  V P+  + +S L AC   + I  G
Sbjct: 216 MSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSGSQRIVEG 275

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           + IH L+    +   +   +AL+DMY KCGS+ +A  +F+  +E D V+ T ++ G A N
Sbjct: 276 QQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFESTTEVDEVSMTVILVGLAQN 335

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G    A+  F  M   GV  ++  + ++L        L  G+ LH+  IK+       V 
Sbjct: 336 GSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVN 395

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
             LI+MY+KC  +  S  VF R  K+  V WN+++A    +G    A++L+ +M    V+
Sbjct: 396 NGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVK 455

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           P D T  SLL A + +  + +   +   +   +G     E  T +ID+  + G L+ A  
Sbjct: 456 PTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKS 515

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
               +P+K  D  +W  ++     HG  E      +++ Q+ 
Sbjct: 516 FIDSLPLK-PDCKIWQALLGACSFHGDTEVGEYAAEQLFQTA 556



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 168/354 (47%), Gaps = 5/354 (1%)

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           +  WN+L+ +Y KCG + +A  +FD M  RDV++   +  G+  N +  +   L + M  
Sbjct: 90  LVVWNSLLSLYAKCGKLVDAIKLFDEMPMRDVISQNIVFYGFLRNRETESGFVLLKRMLG 149

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
            G   ++ T+  +LS C +  +    + +HA  I    + E+ V   LI  Y KC     
Sbjct: 150 SGGFDHA-TLTIVLSVCDTPEFCLVTKMIHALAILSGYDKEISVGNKLITSYFKCGCSVS 208

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
              VF   S +  +   A+++G + N L    + LF  M   +V PN  T  S L A + 
Sbjct: 209 GRGVFDGMSHRNVITLTAVISGLIENELHEDGLRLFSLMRRGLVHPNSVTYLSALAACSG 268

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
              + +   IH  L +YG  S + + + L+D+YSKCGS+E A  IF      + D V  +
Sbjct: 269 SQRIVEGQQIHALLWKYGIESELCIESALMDMYSKCGSIEDAWTIFES--TTEVDEVSMT 326

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
           VI+ G   +G  E A+  F  M+Q+GV+ +    ++ L        L  G  L + +++ 
Sbjct: 327 VILVGLAQNGSEEEAIQFFIRMLQAGVEIDANVVSAVLGVSFIDNSLGLGKQLHSLVIKR 386

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             + +   +   ++++  + G L ++  + R MP K  +  W +++ A   HG+
Sbjct: 387 KFSGNTFVN-NGLINMYSKCGDLTDSQTVFRRMP-KRNYVSWNSMIAAFARHGH 438


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 194/494 (39%), Positives = 291/494 (58%), Gaps = 11/494 (2%)

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V SWN++I+   ++  + EAL+ F  M K  + P  +S    + AC  L +I  G+  H+
Sbjct: 41  VFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTHQ 100

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
                    +I   +AL+ MY  CG + +AR VFD + +R++V+WTSMI GY LNG+  +
Sbjct: 101 QAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALD 160

Query: 297 ALGLFQLM------QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           A+ LF+ +        + +  +S+ + S++SACS +       S+H++ IK+  +  V V
Sbjct: 161 AVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSV 220

Query: 351 ETALIDMYAKCNL--VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV- 407
              L+D YAK     V ++ ++F +   K  V +N+I++    +G++ +A E+FR+++  
Sbjct: 221 GNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKN 280

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           +VV  N  TL+++L A +    L+    IH  +IR G    V V T +ID+Y KCG +E+
Sbjct: 281 KVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVET 340

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A K F  +  K+K++  W+ +IAGYGMHGH   A+ LF  M+ SGV+PN +TF S L AC
Sbjct: 341 ARKAFDRM--KNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAAC 398

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           SH GL  EG   FN M          +HY C+VDLLGRAG L +AYDLI+ M +KP   +
Sbjct: 399 SHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSII 458

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           W +LL AC IH NVEL E++   LFEL+  N G Y+LLS +Y+   RWKD E VR +M  
Sbjct: 459 WSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKN 518

Query: 648 KGLRKAPAHSLIEV 661
           +GL K P  SL+E+
Sbjct: 519 RGLVKPPGFSLLEL 532



 Score =  202 bits (513), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 139/451 (30%), Positives = 239/451 (52%), Gaps = 13/451 (2%)

Query: 62  NVRILFDEMSERSS-FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKA 120
           N+  LF+   +++  F +N+V+   A++G S ++L  F  M +L  Y P   ++P  IKA
Sbjct: 27  NLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLY-PTRSSFPCAIKA 85

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
           C+ L     G   H +  + G+  D FV + LI MY   G+++ ARKVFD + + ++VSW
Sbjct: 86  CSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSW 145

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCA------SVVSVLPACGYLKEIEMGRMI 234
            ++I GY  N  A +A+ +F  +L    + D A       +VSV+ AC  +    +   I
Sbjct: 146 TSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESI 205

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGS--VNEARLVFDRMSERDVVTWTSMINGYALNG 292
           H  V      + ++  N L+D Y K G   V  AR +FD++ ++D V++ S+++ YA +G
Sbjct: 206 HSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSG 265

Query: 293 DVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
               A  +F +L++ + V  N++T+ ++L A S    L+ G+ +H   I+  LE +VIV 
Sbjct: 266 MSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVG 325

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
           T++IDMY KC  V+ + + F R   K    W A++AG   +G A KA+ELF  M+   V 
Sbjct: 326 TSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVR 385

Query: 412 PNDATLNSLLPAYAILA-DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           PN  T  S+L A +     ++     +    R+G    +E    ++D+  + G L+ A+ 
Sbjct: 386 PNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYD 445

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           +   + +K  D ++WS ++A   +H + E A
Sbjct: 446 LIQRMKMK-PDSIIWSSLLAACRIHKNVELA 475



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 107/362 (29%), Positives = 175/362 (48%), Gaps = 29/362 (8%)

Query: 269 VFDRMSER-DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           +F+R  ++ DV +W S+I   A +GD   AL  F  M+   + P   +    + ACSSL+
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            +  G+  H        + ++ V +ALI MY+ C  ++ + +VF    K+  V W +++ 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDAT------LNSLLPAYAILADLQQAMNIHCYLI 441
           G   NG A  AV LF+ +LV+  + +DA       L S++ A + +       +IH ++I
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVI 210

Query: 442 RYGFLSVVEVSTGLIDIYSKCGS--LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           + GF   V V   L+D Y+K G   +  A KIF +I   DKD V ++ I++ Y   G   
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIV--DKDRVSYNSIMSVYAQSGMSN 268

Query: 500 TAVSLFKEMVQSGVQP-NEVTFTSALHACSHGGLLDEGL----DLFNFMLENHQTCSRAD 554
            A  +F+ +V++ V   N +T ++ L A SH G L  G      +    LE+        
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVG--- 325

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
             T I+D+  + GR++ A      M  K   + W A++    +HG+      AAK L EL
Sbjct: 326 --TSIIDMYCKCGRVETARKAFDRMKNKNVRS-WTAMIAGYGMHGH------AAKAL-EL 375

Query: 615 EP 616
            P
Sbjct: 376 FP 377



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 146/273 (53%), Gaps = 12/273 (4%)

Query: 32  TKQLHAFIITSG-PLFTHLRSSLVRAY-----GHVSNVRILFDEMSERSSFLYNTVMKMY 85
           T+ +H+F+I  G      + ++L+ AY     G V+  R +FD++ ++    YN++M +Y
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVY 261

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
           AQ+G S+++ ++F  +++      +  T   V+ A +     ++G  +H +V+  G + D
Sbjct: 262 AQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDD 321

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
             VG  +I MY   G V+ ARK FD M   +V SW  +I+GY  + +A +AL +F  M+ 
Sbjct: 322 VIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMID 381

Query: 206 SGVEPDCASVVSVLPACGYLK-EIEMGRMIHELVAGGRLG--KNIAAWNALVDMYVKCGS 262
           SGV P+  + VSVL AC +    +E  R  + +   GR G    +  +  +VD+  + G 
Sbjct: 382 SGVRPNYITFVSVLAACSHAGLHVEGWRWFNAM--KGRFGVEPGLEHYGCMVDLLGRAGF 439

Query: 263 VNEARLVFDRMSER-DVVTWTSMINGYALNGDV 294
           + +A  +  RM  + D + W+S++    ++ +V
Sbjct: 440 LQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNV 472


>gi|116312013|emb|CAJ86370.1| OSIGBa0117N13.14 [Oryza sativa Indica Group]
 gi|116312056|emb|CAJ86420.1| H0303G06.9 [Oryza sativa Indica Group]
          Length = 559

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 192/554 (34%), Positives = 308/554 (55%), Gaps = 4/554 (0%)

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLI-TGFDMDTFVGNCLIAMYMNFGEVKAAR 166
            P    Y  +++ C      + G ++HGRV   +    D  +   LI  Y  FG+V AAR
Sbjct: 8   KPTAPFYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLIIFYARFGDVAAAR 67

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           K+FD M   SVVSW  ++SGY +N   +EAL +F  M  SG  P+  +  S   AC    
Sbjct: 68  KMFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAG 127

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
               G  +H   A GR   ++   +AL+DM+++CGSV +AR +F  M ++DVV+W ++I 
Sbjct: 128 CARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIR 187

Query: 287 GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346
           G+   G   +ALGLF  M  E + P+  T+GS L AC  +        +H+  IK     
Sbjct: 188 GFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLGYWD 247

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG-CVHNGLARKAVELFRQM 405
           E +V  +LI+ YAKC  +  +  ++   S+   V   A+++G  +    +  A+ELF ++
Sbjct: 248 EKVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMELFCKI 307

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
             + +  +   L+S+L   A +A  +    IH Y+ +   +  + +   L+D+Y+K G  
Sbjct: 308 HRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQSMGDIALDNALVDMYAKAGEF 367

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
             A + F E+P ++  ++ W+ +I   G +G GE AV+LF  MV+ GV+PN+VTF S L 
Sbjct: 368 SDAKRAFDEMPYRN--VISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLS 425

Query: 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           AC H GL ++G++ F  M+  +    RA+HY+  +DLL R G+L++A+ L++   LKP  
Sbjct: 426 ACGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNS 485

Query: 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645
           ++ GA+LGAC +HGN+ LGE AAK LF ++P +  NY +L+ +Y+    W+DA+  R+V+
Sbjct: 486 SMLGAMLGACKLHGNMLLGETAAKNLFSIDPGSSVNYAVLANMYAECSLWEDAQRTREVI 545

Query: 646 DEKGLRKAPAHSLI 659
           DE    K    S+I
Sbjct: 546 DETTDGKEVGFSVI 559



 Score =  206 bits (524), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 146/528 (27%), Positives = 257/528 (48%), Gaps = 15/528 (2%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFII--TSGPLFTHLRSSLVRAY---GHVSNVRIL 66
           T      L+Q   ++ +    K +H  +   ++ P   HL + L+  Y   G V+  R +
Sbjct: 10  TAPFYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLIIFYARFGDVAAARKM 69

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           FD M  RS   +  ++  YA+NG   ++L++F  ++R     P+ +TY     AC     
Sbjct: 70  FDGMPHRSVVSWTAMVSGYARNGRPREALELF-ALMRASGARPNQFTYGSAASACAGAGC 128

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
            + G  +H       F  D FV + L+ M++  G V+ AR++F  M +  VVSWN LI G
Sbjct: 129 ARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRG 188

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
           + +  +  +AL +F  MLK  + PD  ++ S L ACG +       +IH  +        
Sbjct: 189 FVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLGYWDE 248

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV-RNALGLFQLMQ 305
                +L++ Y KC S++ AR+++D +SE D+V+ T++I+GY ++ +   +A+ LF  + 
Sbjct: 249 KVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMELFCKIH 308

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
            +G+  + + + S+L  C+S+   + G  +HA+  K+    ++ ++ AL+DMYAK     
Sbjct: 309 RKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQSMGDIALDNALVDMYAKAGEFS 368

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + + F     +  + W +++  C  NG    AV LF +M+ + V PND T  SLL A  
Sbjct: 369 DAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACG 428

Query: 426 ILADLQQAMNIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
                 + M     ++ RYG     E  +  ID+ ++ G LE A K+  +  +K    ++
Sbjct: 429 HCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNSSML 488

Query: 485 WSVIIAGYGMHGH---GETAV-SLFKEMVQSGVQPNEVTFTSALHACS 528
              ++    +HG+   GETA  +LF   +  G   N     +    CS
Sbjct: 489 -GAMLGACKLHGNMLLGETAAKNLFS--IDPGSSVNYAVLANMYAECS 533



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 109/221 (49%), Gaps = 3/221 (1%)

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE-CEVIVETALIDMYAKCNLVKL 366
           G +P +    SLL  C S    ++G+S+H      +    ++ + T LI  YA+   V  
Sbjct: 6   GAKPTAPFYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLIIFYARFGDVAA 65

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           + ++F     +  V W A+++G   NG  R+A+ELF  M      PN  T  S   A A 
Sbjct: 66  ARKMFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAG 125

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
               +    +H    +  F   + V + L+D++ +CGS+E A ++F+E  +  KD+V W+
Sbjct: 126 AGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAE--MGKKDVVSWN 183

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
            +I G+   GH   A+ LF  M++  + P+  T  SAL AC
Sbjct: 184 ALIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKAC 224


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 206/595 (34%), Positives = 295/595 (49%), Gaps = 83/595 (13%)

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
           F  +TF+ N L++ Y   G +  AR+VFD M   +  S+N L+S   +   A +AL +F 
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALF- 104

Query: 202 WMLKSGVEPD---CA----------------------------------SVVSVLPACGY 224
                G  PD   C+                                  S  S L AC  
Sbjct: 105 -----GAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACAS 159

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
            K    G  +H LV     G ++    ALVDMY KC    EA+ VFD M ER++V+W S+
Sbjct: 160 EKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSL 219

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN- 343
           I  Y  NG V  AL LF  M  +G  P+ +T+ S++SAC+ L   + GR +H   +K + 
Sbjct: 220 ITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDR 279

Query: 344 LECEVIVETALIDMYAKCNLV---KLSFQ----------------------------VFA 372
              ++++  AL+DMYAKC      K  F                             VF 
Sbjct: 280 FREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFL 339

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
           +  +K  V WN ++A   HN    +A+ LF ++  E V P   T  ++L A A LA+LQ 
Sbjct: 340 QMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQL 399

Query: 433 AMNIHCYLIRYGFL------SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
               H ++++ GF       S V V   L+D+Y K GS+    K+F  +  +D   V W+
Sbjct: 400 GQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDN--VSWN 457

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            +I GY  +G  + A+ LF+ M+ S  +P+ VT    L AC H GL+ EG   F  M E+
Sbjct: 458 AMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTED 517

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
           H      DHYTC++DLLGRAG L E  +LI  MP++P   +W +LLGAC +H N+++GE 
Sbjct: 518 HGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGEW 577

Query: 607 AAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           AA  LFEL+P+N G YVLLS +Y+ + +W D   VR  M  +G+ K P  S IE+
Sbjct: 578 AAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSWIEI 632



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 143/477 (29%), Positives = 232/477 (48%), Gaps = 41/477 (8%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G   +   LF  + +     YN V+   AQ+G   D+L+ FL  +   ++  + Y++   
Sbjct: 95  GRADDALALFGAIPDPDQCSYNAVVAALAQHGRGGDALR-FLAAMHADDFVLNAYSFASA 153

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + AC      + G  +H  V  +    D ++G  L+ MY      + A+KVFDAM E ++
Sbjct: 154 LSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNI 213

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-E 236
           VSWN+LI+ Y +N    EAL +F  M+K G  PD  ++ SV+ AC  L     GR +H  
Sbjct: 214 VSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTR 273

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV-- 294
           +V   R  +++   NALVDMY KCG   EA+ VFDRM+ R VV+ TSMI GYA + +V  
Sbjct: 274 MVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGD 333

Query: 295 -----------------------------RNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
                                          AL LF  ++ E V P   T G++L+AC++
Sbjct: 334 AQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACAN 393

Query: 326 LYYLKRGRSLHAWTIKQNL------ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           L  L+ G+  H   +K+        E +V V  +L+DMY K   +    +VF R + +  
Sbjct: 394 LANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDN 453

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           V WNA++ G   NG A+ A+ LF +ML     P+  T+  +L A      +++       
Sbjct: 454 VSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQS 513

Query: 440 LIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           +   +G +   +  T +ID+  + G L+   ++   +P+ + D V+W+ ++    +H
Sbjct: 514 MTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPM-EPDAVLWASLLGACRLH 569



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 133/255 (52%), Gaps = 12/255 (4%)

Query: 51  SSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           +S++  Y   +NV   + +F +M E++   +N ++  YA N    ++L++F+ + R   +
Sbjct: 319 TSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVW 378

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT------FVGNCLIAMYMNFGE 161
            P +YTY  V+ AC +LA  +LG   H  VL  GF  D+      FVGN L+ MY+  G 
Sbjct: 379 -PTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGS 437

Query: 162 VKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPA 221
           +    KVF+ M     VSWN +I GY +N  AK+AL++F+ ML S   PD  +++ VL A
Sbjct: 438 ISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSA 497

Query: 222 CGYLKEIEMGRM-IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVV 279
           CG+   ++ GR     +     +      +  ++D+  + G + E   + + M  E D V
Sbjct: 498 CGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAV 557

Query: 280 TWTSMINGYALNGDV 294
            W S++    L+ ++
Sbjct: 558 LWASLLGACRLHKNI 572



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 101/254 (39%), Gaps = 57/254 (22%)

Query: 38  FIITSGPLF-THLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHD 93
           F   SGP     + +SLV  Y   G +S+   +F+ M+ R +  +N ++  YAQNG + D
Sbjct: 412 FRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKD 471

Query: 94  SLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLI 153
           +L +F  ML   E  PD+ T   V+ AC                                
Sbjct: 472 ALLLFERMLCSNE-RPDSVTMIGVLSACG------------------------------- 499

Query: 154 AMYMNFGEVKAARKVFDAMWE-HSVVS----WNTLISGYFKNAYAKEALVVFDWMLKSGV 208
               + G VK  R+ F +M E H ++     +  +I    +  + KE   + + M    +
Sbjct: 500 ----HSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENM---PM 552

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL----GKNIAAWNALVDMYVKCGSVN 264
           EPD     S+L AC   K I+MG       A G+L      N   +  L +MY + G   
Sbjct: 553 EPDAVLWASLLGACRLHKNIDMGEW-----AAGKLFELDPDNSGPYVLLSNMYAELGKWA 607

Query: 265 EARLVFDRMSERDV 278
           +   V   M  R V
Sbjct: 608 DVFRVRRSMKHRGV 621


>gi|317106770|dbj|BAJ53262.1| JMS10C05.5 [Jatropha curcas]
          Length = 638

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/593 (32%), Positives = 319/593 (53%), Gaps = 5/593 (0%)

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           R++  + +++K Y  +     +L +   M + GE   + +T  ++++AC+   +R  G  
Sbjct: 4   RNTITWTSLIKGYLDDNEFESALNIASEMHKSGEA-LNEHTCSVILQACSSPDYRIFGQQ 62

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
            H  V+  GFD +  VG  LIAMY        A KVFD+M    V  +N +I  Y +   
Sbjct: 63  FHCFVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARAGN 122

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            ++A+ VF  ML +G++P+  +  +++ AC     IE G     L          +  NA
Sbjct: 123 GEKAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNETSIGNA 182

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           +++MY K G   EA  +F  M++R++++WT++I+GY  +GD + A+  F  +   GV  +
Sbjct: 183 IINMYGKKGMAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVNFD 242

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
           S  + ++L  CS    L+ G  +H   IK    C V + TAL+D+YAKC  +  +  VF 
Sbjct: 243 SSLLTTILDGCSECRNLELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGNLMSARMVFD 302

Query: 373 RTSKKKTVPWNAILAGCVHNGL--ARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
             S K+   +NAILAG + N        + LF    ++ ++P+  T + LL   A  + L
Sbjct: 303 GLSSKRIASFNAILAGFMENSRDGEEDPIVLFNHFRLDGIKPDMVTFSRLLSLSANHSTL 362

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
            +    H Y I+ GF + + V+  +I +Y+KCGS+E AH++F+   + D D + W+ +I+
Sbjct: 363 GRGRCYHAYAIKTGFEADLSVANAVITMYAKCGSIEEAHRMFN--VMNDHDSISWNAMIS 420

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
            Y +HG G   + LF+EM++    P+E+T  S L AC++ GL  +G+ LFN M   +   
Sbjct: 421 AYALHGQGAKVLLLFEEMIKKEFAPDEITILSILQACTYSGLFRDGISLFNVMEPKYGIK 480

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
              +HY C+VDLLGRAG L EA D+I   P   +  +W  L+  C + G+   G++A+K+
Sbjct: 481 PLLEHYACMVDLLGRAGHLSEAMDIINKSPFSKSTLLWRTLVNVCKLCGDRNFGKLASKY 540

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           L EL P   G+Y+L+S +Y+  R   +A  VR VM++  L K    S IE+ +
Sbjct: 541 LLELSPVEAGSYILVSNMYAGERMLDEAAKVRTVMNDLKLSKEAGTSWIEIDD 593



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 128/466 (27%), Positives = 239/466 (51%), Gaps = 13/466 (2%)

Query: 33  KQLHAFIITSGPLFTH---LRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYA 86
           +Q H F+I  G  F     + +SL+  Y       +   +FD M+ +    +N ++  YA
Sbjct: 61  QQFHCFVIKCG--FDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYA 118

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           + G    ++++F+ ML  G   P++YT+  +I AC      + G    G     GF  +T
Sbjct: 119 RAGNGEKAIRVFINMLNAG-LQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNET 177

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
            +GN +I MY   G  + A ++F AM + +++SW  LISGY ++   K+A+  F  +   
Sbjct: 178 SIGNAIINMYGKKGMAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLC 237

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           GV  D + + ++L  C   + +E+G  IH LV        +    ALVD+Y KCG++  A
Sbjct: 238 GVNFDSSLLTTILDGCSECRNLELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGNLMSA 297

Query: 267 RLVFDRMSERDVVTWTSMINGYALNG--DVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
           R+VFD +S + + ++ +++ G+  N      + + LF   + +G++P+ +T   LLS  +
Sbjct: 298 RMVFDGLSSKRIASFNAILAGFMENSRDGEEDPIVLFNHFRLDGIKPDMVTFSRLLSLSA 357

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
           +   L RGR  HA+ IK   E ++ V  A+I MYAKC  ++ + ++F   +   ++ WNA
Sbjct: 358 NHSTLGRGRCYHAYAIKTGFEADLSVANAVITMYAKCGSIEEAHRMFNVMNDHDSISWNA 417

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL-IRY 443
           +++    +G   K + LF +M+ +   P++ T+ S+L A       +  +++   +  +Y
Sbjct: 418 MISAYALHGQGAKVLLLFEEMIKKEFAPDEITILSILQACTYSGLFRDGISLFNVMEPKY 477

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           G   ++E    ++D+  + G L  A  I ++ P   K  ++W  ++
Sbjct: 478 GIKPLLEHYACMVDLLGRAGHLSEAMDIINKSPFS-KSTLLWRTLV 522


>gi|334184142|ref|NP_178563.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334302883|sp|Q9SJ73.3|PP148_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g04860
 gi|330250783|gb|AEC05877.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 692

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 203/622 (32%), Positives = 339/622 (54%), Gaps = 14/622 (2%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+   +  SG   F ++++SL+  Y   G V++ ++LFDEM ER + ++N ++  Y++N
Sbjct: 70  EQVQTHLTKSGLDRFVYVKTSLLNLYLKKGCVTSAQMLFDEMPERDTVVWNALICGYSRN 129

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   D+ K+F+ ML+ G ++P   T   ++  C    +   G ++HG    +G ++D+ V
Sbjct: 130 GYECDAWKLFIVMLQQG-FSPSATTLVNLLPFCGQCGFVSQGRSVHGVAAKSGLELDSQV 188

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N LI+ Y    E+ +A  +F  M + S VSWNT+I  Y ++   +EA+ VF  M +  V
Sbjct: 189 KNALISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNMFEKNV 248

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           E    +++++L A  ++        +H LV    +  +I+   +LV  Y +CG +  A  
Sbjct: 249 EISPVTIINLLSA--HVSH----EPLHCLVVKCGMVNDISVVTSLVCAYSRCGCLVSAER 302

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           ++    +  +V  TS+++ YA  GD+  A+  F   +   ++ +++ +  +L  C    +
Sbjct: 303 LYASAKQDSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQLCMKIDAVALVGILHGCKKSSH 362

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           +  G SLH + IK  L  + +V   LI MY+K + V+    +F +  +   + WN++++G
Sbjct: 363 IDIGMSLHGYAIKSGLCTKTLVVNGLITMYSKFDDVETVLFLFEQLQETPLISWNSVISG 422

Query: 389 CVHNGLARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           CV +G A  A E+F QM++   + P+  T+ SLL   + L  L     +H Y +R  F +
Sbjct: 423 CVQSGRASTAFEVFHQMMLTGGLLPDAITIASLLAGCSQLCCLNLGKELHGYTLRNNFEN 482

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
              V T LID+Y+KCG+   A  +F  I  K      W+ +I+GY + G    A+S + E
Sbjct: 483 ENFVCTALIDMYAKCGNEVQAESVFKSI--KAPCTATWNSMISGYSLSGLQHRALSCYLE 540

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M + G++P+E+TF   L AC+HGG +DEG   F  M++         HY  +V LLGRA 
Sbjct: 541 MREKGLKPDEITFLGVLSACNHGGFVDEGKICFRAMIKEFGISPTLQHYALMVGLLGRAC 600

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
              EA  LI  M +KP  AVWGALL AC+IH  +E+GE  A+ +F L+ +N G YVL+S 
Sbjct: 601 LFTEALYLIWKMDIKPDSAVWGALLSACIIHRELEVGEYVARKMFMLDYKNGGLYVLMSN 660

Query: 628 LYSAVRRWKDAENVRDVMDEKG 649
           LY+    W D   VR++M + G
Sbjct: 661 LYATEAMWDDVVRVRNMMKDNG 682



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 107/242 (44%), Gaps = 14/242 (5%)

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD--LQQAMNIHCY 439
           ++++L  C+H  ++   + +FR +L   + PN  T++  L A     +    Q   +  +
Sbjct: 16  FHSLLKSCIHGEISSSPITIFRDLLRSSLTPNHFTMSIFLQATTTSFNSFKLQVEQVQTH 75

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           L + G    V V T L+++Y K G + SA  +F E+P  ++D VVW+ +I GY  +G+  
Sbjct: 76  LTKSGLDRFVYVKTSLLNLYLKKGCVTSAQMLFDEMP--ERDTVVWNALICGYSRNGYEC 133

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM----LENHQTCSRADH 555
            A  LF  M+Q G  P+  T  + L  C   G + +G  +        LE       A  
Sbjct: 134 DAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQGRSVHGVAAKSGLELDSQVKNA-- 191

Query: 556 YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
              ++    +   L  A  L R M  K T + W  ++GA    G  E      K +FE  
Sbjct: 192 ---LISFYSKCAELGSAEVLFREMKDKSTVS-WNTMIGAYSQSGLQEEAITVFKNMFEKN 247

Query: 616 PE 617
            E
Sbjct: 248 VE 249


>gi|75274055|sp|Q9LT48.1|PP244_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g20730
 gi|9294399|dbj|BAB02480.1| unnamed protein product [Arabidopsis thaliana]
 gi|51971823|dbj|BAD44576.1| unknown protein [Arabidopsis thaliana]
          Length = 565

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 191/551 (34%), Positives = 305/551 (55%), Gaps = 7/551 (1%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           Y   +K C+    +K  + +HG  +  GF  +  + + LI +Y+  G+VK ARK+FD + 
Sbjct: 16  YLKALKLCSYQNVKKQLLLIHGNSITNGFCSNLQLKDMLIDLYLKQGDVKHARKLFDRIS 75

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
           +  VVSW  +IS + +  Y  +AL++F  M +  V+ +  +  SVL +C  L  ++ G  
Sbjct: 76  KRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKANQFTYGSVLKSCKDLGCLKEGMQ 135

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           IH  V  G    N+   +AL+ +Y +CG + EARL FD M ERD+V+W +MI+GY  N  
Sbjct: 136 IHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQFDSMKERDLVSWNAMIDGYTANAC 195

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              +  LFQLM  EG +P+  T GSLL A   +  L+    LH   IK        +  +
Sbjct: 196 ADTSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKCLEIVSELHGLAIKLGFGRSSALIRS 255

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG-CVHNGLARKAVELFRQMLVEVVEP 412
           L++ Y KC  +  ++++   T K+  +   A++ G    N     A ++F+ M+    + 
Sbjct: 256 LVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFSQQNNCTSDAFDIFKDMIRMKTKM 315

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV-VEVSTGLIDIYSKCGSLESAHKI 471
           ++  ++S+L     +A +     IH + ++   +   V +   LID+Y+K G +E A   
Sbjct: 316 DEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEIEDAVLA 375

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F E  +K+KD+  W+ +IAGYG HG+ E A+ L+  M    ++PN+VTF S L ACSH G
Sbjct: 376 FEE--MKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIKPNDVTFLSLLSACSHTG 433

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP--LKPTHAVWG 589
             + G  +++ M+  H   +R +H +CI+D+L R+G L+EAY LIR+    +  + + WG
Sbjct: 434 QTELGWKIYDTMINKHGIEAREEHLSCIIDMLARSGYLEEAYALIRSKEGIVSLSSSTWG 493

Query: 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
           A L AC  HGNV+L +VAA  L  +EP  P NY+ L+ +Y+A   W +A N R +M E G
Sbjct: 494 AFLDACRRHGNVQLSKVAATQLLSMEPRKPVNYINLASVYAANGAWDNALNTRKLMKESG 553

Query: 650 -LRKAPAHSLI 659
              KAP +SL+
Sbjct: 554 SCNKAPGYSLV 564



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 147/539 (27%), Positives = 275/539 (51%), Gaps = 23/539 (4%)

Query: 35  LHAFIITSGPLFT-HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           +H   IT+G      L+  L+  Y   G V + R LFD +S+R    +  ++  +++ G 
Sbjct: 35  IHGNSITNGFCSNLQLKDMLIDLYLKQGDVKHARKLFDRISKRDVVSWTAMISRFSRCGY 94

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             D+L +F  M R  +   + +TY  V+K+C DL   K G+ +HG V       +  V +
Sbjct: 95  HPDALLLFKEMHR-EDVKANQFTYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRS 153

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            L+++Y   G+++ AR  FD+M E  +VSWN +I GY  NA A  +  +F  ML  G +P
Sbjct: 154 ALLSLYARCGKMEEARLQFDSMKERDLVSWNAMIDGYTANACADTSFSLFQLMLTEGKKP 213

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           DC +  S+L A   +K +E+   +H L      G++ A   +LV+ YVKCGS+  A  + 
Sbjct: 214 DCFTFGSLLRASIVVKCLEIVSELHGLAIKLGFGRSSALIRSLVNAYVKCGSLANAWKLH 273

Query: 271 DRMSERDVVTWTSMINGYA-LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           +   +RD+++ T++I G++  N    +A  +F+ M     + + + + S+L  C+++  +
Sbjct: 274 EGTKKRDLLSCTALITGFSQQNNCTSDAFDIFKDMIRMKTKMDEVVVSSMLKICTTIASV 333

Query: 330 KRGRSLHAWTIKQN-LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
             GR +H + +K + +  +V +  +LIDMYAK   ++ +   F    +K    W +++AG
Sbjct: 334 TIGRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAG 393

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI-RYGFLS 447
              +G   KA++L+ +M  E ++PND T  SLL A +     +    I+  +I ++G  +
Sbjct: 394 YGRHGNFEKAIDLYNRMEHERIKPNDVTFLSLLSACSHTGQTELGWKIYDTMINKHGIEA 453

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV------WSVIIAGYGMHGHGETA 501
             E  + +ID+ ++ G LE A+ +     I+ K+ +V      W   +     HG+ + +
Sbjct: 454 REEHLSCIIDMLARSGYLEEAYAL-----IRSKEGIVSLSSSTWGAFLDACRRHGNVQLS 508

Query: 502 VSLFKEMVQSGVQPNE-VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
                +++   ++P + V + +     +  G  D  L+    M E+  +C++A  Y+ +
Sbjct: 509 KVAATQLLS--MEPRKPVNYINLASVYAANGAWDNALNTRKLMKES-GSCNKAPGYSLV 564


>gi|449471512|ref|XP_004153331.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 607

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 177/559 (31%), Positives = 307/559 (54%)

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
           +PD  TYP V+++C+  +    G  +HG ++  GFD+   V   L  MY    E + A +
Sbjct: 7   HPDEETYPFVLRSCSSFSNVGFGRTIHGYLVKLGFDLFDVVATALAEMYEECIEFENAHQ 66

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +FD      +   ++L +   +N   +    VF  M+   + PD  +  ++L     L  
Sbjct: 67  LFDKRSVKDLGWPSSLTTEGPQNDNGEGIFRVFGRMIAEQLVPDSFTFFNLLRFIAGLNS 126

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           I++ +++H +    +L  ++    A++ +Y K  S+ +AR +FD+M E+D V W  MI  
Sbjct: 127 IQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEKDRVVWNIMIAA 186

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           YA  G     L LF+ M   G+R +  T   ++S+ + L  +  G+  HA  ++   + +
Sbjct: 187 YAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTHAHILRNGSDSQ 246

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           V V  +LIDMY +C ++  + ++F   + K  + W+A++ G V NG +  A+ LF +M  
Sbjct: 247 VSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTALSLFSKMKS 306

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
           + ++ +   + ++LPA+  +  L+    +H Y ++ G  S+  ++T L+  Y+KCGS+E 
Sbjct: 307 DGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITYAKCGSIEM 366

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A ++F E  I DKD+++W+ +I+ +  HG       L+  M  S  +P++VTF   L AC
Sbjct: 367 AQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVTFLGLLTAC 426

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
            + GL+++G + F  M E++      +HY C+V+LLGRAG + EA +L++ MP+KP   V
Sbjct: 427 VNSGLVEKGKEFFKEMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKNMPIKPDARV 486

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           WG LL AC +H   +L E AA+ L  +EP N GNY+LLS +Y+A  +W     +R  +  
Sbjct: 487 WGPLLSACKMHPGSKLAEFAAEKLINMEPRNAGNYILLSNIYAAAGKWDGVAKMRSFLRN 546

Query: 648 KGLRKAPAHSLIEVRNILT 666
           KGL+K P  S +E+   +T
Sbjct: 547 KGLKKIPGCSWLEINGHVT 565



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 197/404 (48%), Gaps = 22/404 (5%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFL 77
           K+V   A    ++G   ++  +++   L++ LRS        + + R LFD+M E+   +
Sbjct: 131 KIVHCIAIVSKLSGDLLVNTAVLS---LYSKLRS--------LVDARKLFDKMPEKDRVV 179

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N ++  YA+ G   + L++F  M R G    D +T   VI +   L     G   H  +
Sbjct: 180 WNIMIAAYAREGKPTECLELFKSMARSG-IRSDLFTALPVISSIAQLKCVDWGKQTHAHI 238

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           L  G D    V N LI MY     + +A K+F+ M + SV+SW+ +I GY KN  +  AL
Sbjct: 239 LRNGSDSQVSVHNSLIDMYCECKILDSACKIFNWMTDKSVISWSAMIKGYVKNGQSLTAL 298

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
            +F  M   G++ D   ++++LPA  ++  +E  + +H       L    +   AL+  Y
Sbjct: 299 SLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLGLTSLPSLNTALLITY 358

Query: 258 VKCGSVNEARLVF--DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
            KCGS+  A+ +F  +++ ++D++ W SMI+ +A +GD      L+  M+    +P+ +T
Sbjct: 359 AKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGDWSQCFKLYNRMKCSNSKPDQVT 418

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE--TALIDMYAKCNLVKLSFQVFAR 373
              LL+AC +   +++G+      + ++  C+   E    ++++  +  L+  + ++   
Sbjct: 419 FLGLLTACVNSGLVEKGKEFFK-EMTESYGCQPSQEHYACMVNLLGRAGLISEAGELVKN 477

Query: 374 TS-KKKTVPWNAILAGC-VHNGLARKAVELFRQMLVEVVEPNDA 415
              K     W  +L+ C +H G   K  E   + L+  +EP +A
Sbjct: 478 MPIKPDARVWGPLLSACKMHPG--SKLAEFAAEKLIN-MEPRNA 518



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 191/404 (47%), Gaps = 14/404 (3%)

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI--AAWNALVDMYVKC 260
           M+   + PD  +   VL +C     +  GR IH  +   +LG ++      AL +MY +C
Sbjct: 1   MVAKSMHPDEETYPFVLRSCSSFSNVGFGRTIHGYLV--KLGFDLFDVVATALAEMYEEC 58

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL---MQFEGVRPNSLTIG 317
                A  +FD+ S +D + W S +       D  N  G+F++   M  E + P+S T  
Sbjct: 59  IEFENAHQLFDKRSVKD-LGWPSSLTTEGPQND--NGEGIFRVFGRMIAEQLVPDSFTFF 115

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           +LL   + L  ++  + +H   I   L  +++V TA++ +Y+K   +  + ++F +  +K
Sbjct: 116 NLLRFIAGLNSIQLAKIVHCIAIVSKLSGDLLVNTAVLSLYSKLRSLVDARKLFDKMPEK 175

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V WN ++A     G   + +ELF+ M    +  +  T   ++ + A L  +      H
Sbjct: 176 DRVVWNIMIAAYAREGKPTECLELFKSMARSGIRSDLFTALPVISSIAQLKCVDWGKQTH 235

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            +++R G  S V V   LID+Y +C  L+SA KIF+   + DK ++ WS +I GY  +G 
Sbjct: 236 AHILRNGSDSQVSVHNSLIDMYCECKILDSACKIFNW--MTDKSVISWSAMIKGYVKNGQ 293

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
             TA+SLF +M   G+Q + V   + L A  H G L+    L  + ++   T S     T
Sbjct: 294 SLTALSLFSKMKSDGIQADFVIMINILPAFVHIGALENVKYLHGYSMKLGLT-SLPSLNT 352

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAV-WGALLGACVIHGN 600
            ++    + G ++ A  L     +     + W +++ A   HG+
Sbjct: 353 ALLITYAKCGSIEMAQRLFEEEKIDDKDLIMWNSMISAHANHGD 396


>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74600, chloroplastic; Flags: Precursor
 gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
 gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 895

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 199/633 (31%), Positives = 339/633 (53%), Gaps = 14/633 (2%)

Query: 33  KQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           K + A +I  G     + +++V  Y   GH++    +F  +   S   +  ++  Y ++ 
Sbjct: 271 KVVQARVIKCGAEDVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVVSWTVMLSGYTKSN 330

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
            +  +L++F  M   G    +N T   VI AC   +       +H  V  +GF +D+ V 
Sbjct: 331 DAFSALEIFKEMRHSG-VEINNCTVTSVISACGRPSMVCEASQVHAWVFKSGFYLDSSVA 389

Query: 150 NCLIAMYMNFGEVKAARKVF---DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
             LI+MY   G++  + +VF   D +   ++V  N +I+ + ++    +A+ +F  ML+ 
Sbjct: 390 AALISMYSKSGDIDLSEQVFEDLDDIQRQNIV--NVMITSFSQSKKPGKAIRLFTRMLQE 447

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           G+  D  SV S+L     L  + +G+ +H       L  ++   ++L  +Y KCGS+ E+
Sbjct: 448 GLRTDEFSVCSLLSV---LDCLNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEES 504

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
             +F  +  +D   W SMI+G+   G +R A+GLF  M  +G  P+  T+ ++L+ CSS 
Sbjct: 505 YKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSH 564

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
             L RG+ +H +T++  ++  + + +AL++MY+KC  +KL+ QV+ R  +   V  ++++
Sbjct: 565 PSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLI 624

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           +G   +GL +    LFR M++     +   ++S+L A A+  +      +H Y+ + G  
Sbjct: 625 SGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYITKIGLC 684

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           +   V + L+ +YSK GS++   K FS+I     D++ W+ +IA Y  HG    A+ ++ 
Sbjct: 685 TEPSVGSSLLTMYSKFGSIDDCCKAFSQI--NGPDLIAWTALIASYAQHGKANEALQVYN 742

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
            M + G +P++VTF   L ACSHGGL++E     N M++++       HY C+VD LGR+
Sbjct: 743 LMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRS 802

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           GRL EA   I  M +KP   VWG LL AC IHG VELG+VAAK   ELEP + G Y+ LS
Sbjct: 803 GRLREAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYISLS 862

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
            + + V  W + E  R +M   G++K P  S +
Sbjct: 863 NILAEVGEWDEVEETRKLMKGTGVQKEPGWSSV 895



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 163/567 (28%), Positives = 271/567 (47%), Gaps = 17/567 (2%)

Query: 44  PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLG 100
           P    L  SL+  Y   G +++   LFD + +      N ++  Y Q+    +SL+ F  
Sbjct: 81  PFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRLFEESLRFFSK 140

Query: 101 MLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG 160
           M  LG +  +  +Y  VI AC+ L        +    +  G+     V + LI ++    
Sbjct: 141 MHFLG-FEANEISYGSVISACSALQAPLFSELVCCHTIKMGYFFYEVVESALIDVFSKNL 199

Query: 161 EVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLP 220
             + A KVF      +V  WNT+I+G  +N        +F  M     +PD  +  SVL 
Sbjct: 200 RFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQKPDSYTYSSVLA 259

Query: 221 ACGYLKEIEMGRMIHELVAGGRLG-KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVV 279
           AC  L+++  G+++   V   + G +++    A+VD+Y KCG + EA  VF R+    VV
Sbjct: 260 ACASLEKLRFGKVVQARVI--KCGAEDVFVCTAIVDLYAKCGHMAEAMEVFSRIPNPSVV 317

Query: 280 TWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWT 339
           +WT M++GY  + D  +AL +F+ M+  GV  N+ T+ S++SAC     +     +HAW 
Sbjct: 318 SWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWV 377

Query: 340 IKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK-KKTVPWNAILAGCVHNGLARKA 398
            K     +  V  ALI MY+K   + LS QVF      ++    N ++     +    KA
Sbjct: 378 FKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIVNVMITSFSQSKKPGKA 437

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
           + LF +ML E +  ++ ++ SLL   ++L  L     +H Y ++ G +  + V + L  +
Sbjct: 438 IRLFTRMLQEGLRTDEFSVCSLL---SVLDCLNLGKQVHGYTLKSGLVLDLTVGSSLFTL 494

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           YSKCGSLE ++K+F  IP KD     W+ +I+G+  +G+   A+ LF EM+  G  P+E 
Sbjct: 495 YSKCGSLEESYKLFQGIPFKDN--ACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDES 552

Query: 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578
           T  + L  CS    L  G ++  + L         D  + +V++  + G L  A  +   
Sbjct: 553 TLAAVLTVCSSHPSLPRGKEIHGYTLRAGID-KGMDLGSALVNMYSKCGSLKLARQVYDR 611

Query: 579 MP-LKPTHAVWGALLGACVIHGNVELG 604
           +P L P      +L+     HG ++ G
Sbjct: 612 LPELDPVSC--SSLISGYSQHGLIQDG 636



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 123/272 (45%), Gaps = 10/272 (3%)

Query: 324 SSLYYLKRGRSLHAWTIKQNL-ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           S L  L+  + L A  +++ L   +V +  +L+  Y+    +  + ++F    +   V  
Sbjct: 59  SRLCNLRTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSC 118

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
           N +++G   + L  +++  F +M     E N+ +  S++ A + L     +  + C+ I+
Sbjct: 119 NIMISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIK 178

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAV 502
            G+     V + LID++SK    E A+K+F +      ++  W+ IIAG   + +     
Sbjct: 179 MGYFFYEVVESALIDVFSKNLRFEDAYKVFRD--SLSANVYCWNTIIAGALRNQNYGAVF 236

Query: 503 SLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC--IV 560
            LF EM     +P+  T++S L AC+      E L     +      C   D + C  IV
Sbjct: 237 DLFHEMCVGFQKPDSYTYSSVLAACASL----EKLRFGKVVQARVIKCGAEDVFVCTAIV 292

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           DL  + G + EA ++   +P  P+   W  +L
Sbjct: 293 DLYAKCGHMAEAMEVFSRIP-NPSVVSWTVML 323


>gi|359489798|ref|XP_002274780.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 804

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 191/550 (34%), Positives = 298/550 (54%), Gaps = 4/550 (0%)

Query: 104 LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163
           + E  P++ T   VI+A + L    +   + G V+  GF+ +  V   LI  Y ++ ++ 
Sbjct: 3   MTEQRPNHVTVLSVIRAISGLGLEDMMRVICGSVIKLGFESEVSVATALIGFYSDY-DMG 61

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
              K+F+      +V W+ ++S   K+    EA  +F  M   GVEP+  S+VS+LPAC 
Sbjct: 62  IVWKIFNQTPIKDLVLWSAMVSACVKSGQYGEAFEIFRAMQYDGVEPNHVSIVSILPACA 121

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
            +  +  G+ IH               N+LVDMY KC +   + LVFD++ E+D+++WT+
Sbjct: 122 NVGALLFGKEIHGFSIKKMFHPLTNVHNSLVDMYAKCRNFKASMLVFDQILEKDLISWTT 181

Query: 284 MINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN 343
           +I G   N   R A   F  MQF     +   +  L+ A       K G + H + +K  
Sbjct: 182 IIRGCIENDCPREAFKAFSRMQFSCFGADETIVQDLIVAIIQADEHKFGIAFHGFLLKNG 241

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
           L   V + TAL+ MYAK   ++ +  VF + +KK  + W+A+++   H+     A+E F+
Sbjct: 242 LLAFVSIGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMISVHAHSRHPYNALETFK 301

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
           QM      PN+ T  SLL A +++   +   +I  +  + G+LS   +S+ LID+Y K G
Sbjct: 302 QMQSTDERPNEITFVSLLQACSLIGAQELGESIQAHATKAGYLSNAFLSSALIDLYCKFG 361

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            +     IF+EIP KD  +V WS +I GYG++G G+ A+  F  M+  GV+PNEV F S 
Sbjct: 362 RINQGRAIFNEIPTKD--LVCWSSMINGYGLNGCGDEALETFSNMLACGVKPNEVVFISV 419

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           L ACSH GL  EG   F+ M + +    +  HY C+VDL+ R G ++ A   +  MP++P
Sbjct: 420 LSACSHCGLEHEGWSCFSSMEQKYGIIPKLPHYACMVDLISRRGNIEGALQFVNKMPMEP 479

Query: 584 THAVWGALLGAC-VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642
              +WGALL  C   HG++E+ E+ A+ L  L+P+N   YV+LS LY+   RW D E +R
Sbjct: 480 DKRIWGALLAGCRSTHGSIEIAELVAERLIGLDPQNTSYYVILSNLYAEQGRWGDVERLR 539

Query: 643 DVMDEKGLRK 652
            ++DEKGL+K
Sbjct: 540 KLVDEKGLKK 549



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/466 (25%), Positives = 222/466 (47%), Gaps = 24/466 (5%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F++   +   L++ ++    ++G   ++ ++F  M   G   P++ +   ++ AC ++ 
Sbjct: 66  IFNQTPIKDLVLWSAMVSACVKSGQYGEAFEIFRAMQYDG-VEPNHVSIVSILPACANVG 124

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
               G  +HG  +   F   T V N L+ MY      KA+  VFD + E  ++SW T+I 
Sbjct: 125 ALLFGKEIHGFSIKKMFHPLTNVHNSLVDMYAKCRNFKASMLVFDQILEKDLISWTTIIR 184

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           G  +N   +EA   F  M  S    D   V  ++ A     E + G   H  +    L  
Sbjct: 185 GCIENDCPREAFKAFSRMQFSCFGADETIVQDLIVAIIQADEHKFGIAFHGFLLKNGLLA 244

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
            ++   AL+ MY K G +  A +VFD+++++D ++W++MI+ +A +    NAL  F+ MQ
Sbjct: 245 FVSIGTALLQMYAKFGELESAIIVFDQLNKKDYISWSAMISVHAHSRHPYNALETFKQMQ 304

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
               RPN +T  SLL ACS +   + G S+ A   K        + +ALID+Y K   + 
Sbjct: 305 STDERPNEITFVSLLQACSLIGAQELGESIQAHATKAGYLSNAFLSSALIDLYCKFGRIN 364

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA-- 423
               +F     K  V W++++ G   NG   +A+E F  ML   V+PN+    S+L A  
Sbjct: 365 QGRAIFNEIPTKDLVCWSSMINGYGLNGCGDEALETFSNMLACGVKPNEVVFISVLSACS 424

Query: 424 --------YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
                   ++  + ++Q         +YG +  +     ++D+ S+ G++E A +  +++
Sbjct: 425 HCGLEHEGWSCFSSMEQ---------KYGIIPKLPHYACMVDLISRRGNIEGALQFVNKM 475

Query: 476 PIKDKDIVVWSVIIAG-YGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           P+ + D  +W  ++AG    HG  E A  + + ++  G+ P   ++
Sbjct: 476 PM-EPDKRIWGALLAGCRSTHGSIEIAELVAERLI--GLDPQNTSY 518


>gi|15232344|ref|NP_188709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|38564272|gb|AAR23715.1| At3g20730 [Arabidopsis thaliana]
 gi|332642896|gb|AEE76417.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 564

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 191/551 (34%), Positives = 305/551 (55%), Gaps = 7/551 (1%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           Y   +K C+    +K  + +HG  +  GF  +  + + LI +Y+  G+VK ARK+FD + 
Sbjct: 15  YLKALKLCSYQNVKKQLLLIHGNSITNGFCSNLQLKDMLIDLYLKQGDVKHARKLFDRIS 74

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
           +  VVSW  +IS + +  Y  +AL++F  M +  V+ +  +  SVL +C  L  ++ G  
Sbjct: 75  KRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKANQFTYGSVLKSCKDLGCLKEGMQ 134

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           IH  V  G    N+   +AL+ +Y +CG + EARL FD M ERD+V+W +MI+GY  N  
Sbjct: 135 IHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQFDSMKERDLVSWNAMIDGYTANAC 194

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              +  LFQLM  EG +P+  T GSLL A   +  L+    LH   IK        +  +
Sbjct: 195 ADTSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKCLEIVSELHGLAIKLGFGRSSALIRS 254

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG-CVHNGLARKAVELFRQMLVEVVEP 412
           L++ Y KC  +  ++++   T K+  +   A++ G    N     A ++F+ M+    + 
Sbjct: 255 LVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFSQQNNCTSDAFDIFKDMIRMKTKM 314

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV-VEVSTGLIDIYSKCGSLESAHKI 471
           ++  ++S+L     +A +     IH + ++   +   V +   LID+Y+K G +E A   
Sbjct: 315 DEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEIEDAVLA 374

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F E  +K+KD+  W+ +IAGYG HG+ E A+ L+  M    ++PN+VTF S L ACSH G
Sbjct: 375 FEE--MKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIKPNDVTFLSLLSACSHTG 432

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP--LKPTHAVWG 589
             + G  +++ M+  H   +R +H +CI+D+L R+G L+EAY LIR+    +  + + WG
Sbjct: 433 QTELGWKIYDTMINKHGIEAREEHLSCIIDMLARSGYLEEAYALIRSKEGIVSLSSSTWG 492

Query: 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
           A L AC  HGNV+L +VAA  L  +EP  P NY+ L+ +Y+A   W +A N R +M E G
Sbjct: 493 AFLDACRRHGNVQLSKVAATQLLSMEPRKPVNYINLASVYAANGAWDNALNTRKLMKESG 552

Query: 650 -LRKAPAHSLI 659
              KAP +SL+
Sbjct: 553 SCNKAPGYSLV 563



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 147/539 (27%), Positives = 275/539 (51%), Gaps = 23/539 (4%)

Query: 35  LHAFIITSGPLFT-HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           +H   IT+G      L+  L+  Y   G V + R LFD +S+R    +  ++  +++ G 
Sbjct: 34  IHGNSITNGFCSNLQLKDMLIDLYLKQGDVKHARKLFDRISKRDVVSWTAMISRFSRCGY 93

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             D+L +F  M R  +   + +TY  V+K+C DL   K G+ +HG V       +  V +
Sbjct: 94  HPDALLLFKEMHR-EDVKANQFTYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRS 152

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            L+++Y   G+++ AR  FD+M E  +VSWN +I GY  NA A  +  +F  ML  G +P
Sbjct: 153 ALLSLYARCGKMEEARLQFDSMKERDLVSWNAMIDGYTANACADTSFSLFQLMLTEGKKP 212

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           DC +  S+L A   +K +E+   +H L      G++ A   +LV+ YVKCGS+  A  + 
Sbjct: 213 DCFTFGSLLRASIVVKCLEIVSELHGLAIKLGFGRSSALIRSLVNAYVKCGSLANAWKLH 272

Query: 271 DRMSERDVVTWTSMINGYA-LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           +   +RD+++ T++I G++  N    +A  +F+ M     + + + + S+L  C+++  +
Sbjct: 273 EGTKKRDLLSCTALITGFSQQNNCTSDAFDIFKDMIRMKTKMDEVVVSSMLKICTTIASV 332

Query: 330 KRGRSLHAWTIKQN-LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
             GR +H + +K + +  +V +  +LIDMYAK   ++ +   F    +K    W +++AG
Sbjct: 333 TIGRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAG 392

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI-RYGFLS 447
              +G   KA++L+ +M  E ++PND T  SLL A +     +    I+  +I ++G  +
Sbjct: 393 YGRHGNFEKAIDLYNRMEHERIKPNDVTFLSLLSACSHTGQTELGWKIYDTMINKHGIEA 452

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV------WSVIIAGYGMHGHGETA 501
             E  + +ID+ ++ G LE A+ +     I+ K+ +V      W   +     HG+ + +
Sbjct: 453 REEHLSCIIDMLARSGYLEEAYAL-----IRSKEGIVSLSSSTWGAFLDACRRHGNVQLS 507

Query: 502 VSLFKEMVQSGVQPNE-VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
                +++   ++P + V + +     +  G  D  L+    M E+  +C++A  Y+ +
Sbjct: 508 KVAATQLLS--MEPRKPVNYINLASVYAANGAWDNALNTRKLMKES-GSCNKAPGYSLV 563


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 183/559 (32%), Positives = 301/559 (53%), Gaps = 40/559 (7%)

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
           D + F  N L++   +   +    ++F +M +   VS+N LI+G+        A   +  
Sbjct: 73  DPNLFTRNALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRA 132

Query: 203 MLK-------SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           +L+       + V P   ++  ++ A   L +  +GR +H  +     G     W+ LVD
Sbjct: 133 LLREEAVVDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVD 192

Query: 256 MYVK-------------------------------CGSVNEARLVFDRMSERDVVTWTSM 284
           MY K                               C  V EAR VF+ M +RD +TWT+M
Sbjct: 193 MYAKMGLIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTM 252

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           + G   NG    AL +F+ M+ EGV  +  T GS+L+AC +L   + G+ +HA+TI+   
Sbjct: 253 VTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLY 312

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
           +  + V +AL+DMY+KC  ++L+  VF R + K  + W A++ G   NG   +AV +F +
Sbjct: 313 DGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSE 372

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           M  + ++PND TL S++ + A LA L++    HC  +  G    + VS+ L+ +Y KCGS
Sbjct: 373 MQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGS 432

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           +E AH++F E+P  D+  V ++ +++GY   G  +  + LF++M+  GV+PN VTF   L
Sbjct: 433 IEDAHRLFDEMPFHDQ--VSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVL 490

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            ACS  GL+++G   F+ M ++H      DHYTC++DL  R+GRL EA + IR MP  P 
Sbjct: 491 SACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPD 550

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
              W  LL AC + G++E+G+ AA+ L + +P+NP +YVLL  ++++   W +   +R  
Sbjct: 551 AIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRG 610

Query: 645 MDEKGLRKAPAHSLIEVRN 663
           M ++ ++K P  S I+ +N
Sbjct: 611 MRDRQVKKEPGCSWIKYKN 629



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 153/560 (27%), Positives = 270/560 (48%), Gaps = 48/560 (8%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGP-LFTHLRSSLVRAYGH---VSNVRI 65
           P  T+++  L+  YA +  +   ++L  F     P LFT  R++L+ A  H   + ++  
Sbjct: 42  PPPTYVLNHLLTAYARSGRLPLARRL--FDAMPDPNLFT--RNALLSALAHARLLPDMDR 97

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL------GEYNPDNYTYPIVIK 119
           LF  M +R +  YN ++  ++  GA   +   +  +LR           P   T   ++ 
Sbjct: 98  LFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVM 157

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           A + L  R LG  +H +++  GF    F  + L+ MY   G +  A++VFD M   +VV 
Sbjct: 158 AASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVM 217

Query: 180 WNTLISGYFK-------------------------------NAYAKEALVVFDWMLKSGV 208
           +NT+I+G  +                               N    EAL VF  M   GV
Sbjct: 218 YNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGV 277

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
             D  +  S+L ACG L   E G+ IH          NI   +ALVDMY KC S+  A  
Sbjct: 278 GIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEA 337

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VF RM+ +++++WT+MI GY  NG    A+ +F  MQ +G++PN  T+GS++S+C++L  
Sbjct: 338 VFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLAS 397

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L+ G   H   +   L   + V +AL+ +Y KC  ++ + ++F        V + A+++G
Sbjct: 398 LEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSG 457

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN-IHCYLIRYGFLS 447
               G A++ ++LF +ML++ V+PN  T   +L A +    +++  +  H     +G + 
Sbjct: 458 YAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVL 517

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
           + +  T +ID+YS+ G L+ A +   ++P +  D + W+ +++   + G  E      + 
Sbjct: 518 LDDHYTCMIDLYSRSGRLKEAEEFIRQMP-RCPDAIGWATLLSACRLRGDMEIGKWAAEN 576

Query: 508 MVQSGVQ-PNEVTFTSALHA 526
           ++++  Q P       ++HA
Sbjct: 577 LLKTDPQNPASYVLLCSMHA 596


>gi|356565918|ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Glycine max]
          Length = 703

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 219/650 (33%), Positives = 332/650 (51%), Gaps = 23/650 (3%)

Query: 33  KQLHAFIITSGPLFTHLRS-------------SLVRAYG---HVSNVRILFDEMSERSSF 76
           K+LH+  +  G + TH R+             +L+ +Y     +++   +FDEM  R + 
Sbjct: 2   KRLHSLTLL-GLIATHCRAIKLGSIADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTV 60

Query: 77  LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGR 136
            +N ++  +A +G   D+    LG +R   +  D+ T+  ++K    +   KLG  LH  
Sbjct: 61  SWNAIISAFASSG-DLDTTWQLLGAMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSV 119

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEA 196
           +L  G   + F G+ L+ MY   G V     VF +M E + VSWNTL++ Y +      A
Sbjct: 120 MLKVGLSENVFSGSALLDMYAKCGRVDDGYVVFQSMPERNYVSWNTLVASYSRVGDCDMA 179

Query: 197 LVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
             V   M   GVE D  +V  +L         ++   +H  +    L       NA +  
Sbjct: 180 FWVLSCMELEGVEIDDGTVSPLLTLLDNAMFYKLTMQLHCKIVKHGLELFNTVCNATITA 239

Query: 257 YVKCGSVNEARLVFD-RMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           Y +C S+ +A  VFD  +  RD+VTW SM+  Y ++     A  +F  MQ  G  P++ T
Sbjct: 240 YSECCSLQDAERVFDGAVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYT 299

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN--LVKLSFQVFAR 373
              ++ ACS   +   G+ LH   IK+ L+  V V  ALI MY + N   ++ + ++F  
Sbjct: 300 YTGIVGACSVQEHKTCGKCLHGLVIKRGLDNSVPVSNALISMYIRFNDRCMEDALRIFFS 359

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
              K    WN+ILAG V  GL+  A+ LF QM   V+E +  T ++++ + + LA LQ  
Sbjct: 360 MDLKDCCTWNSILAGYVQVGLSEDALRLFLQMRCLVIEIDHYTFSAVIRSCSDLATLQLG 419

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
              H   ++ GF +   V + LI +YSKCG +E A K F E   KD + +VW+ II GY 
Sbjct: 420 QQFHVLALKVGFDTNSYVGSSLIFMYSKCGIIEDARKSF-EATSKD-NAIVWNSIIFGYA 477

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
            HG G  A+ LF  M +  V+ + +TF + L ACSH GL++EG +    M  +     R 
Sbjct: 478 QHGQGNIALDLFYMMKERKVKLDHITFVAVLTACSHNGLVEEGCNFIESMESDFGIPPRQ 537

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
           +HY C +DL GRAG L +A  L+ TMP +P   V   LLGAC   G++EL    AK L E
Sbjct: 538 EHYACAIDLYGRAGHLKKATALVETMPFEPDAMVLKTLLGACRFCGDIELASQIAKILLE 597

Query: 614 LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           LEPE    YV+LS++Y   + W +  +V  +M E+G++K P  S IEV+N
Sbjct: 598 LEPEEHCTYVILSEMYGRFKMWGEKASVTRMMRERGVKKVPGWSWIEVKN 647


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 194/548 (35%), Positives = 296/548 (54%), Gaps = 8/548 (1%)

Query: 124 LAWRKLGI----ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           L W+  G+     LH ++     D +TF+GN L+  Y   G +  A+  F  +  H+  S
Sbjct: 41  LLWQCRGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHNAHS 100

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WN L++ Y +N + + A  +F WM   GV P+  ++ + L AC   + + +GR ++EL+A
Sbjct: 101 WNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLNELIA 160

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
              L  +    ++L+ MY +C  + EA   FDR  E+DVV WT+MI+ YA N     AL 
Sbjct: 161 SEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALE 220

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE-CEVIVETALIDMY 358
           L + M  EG++    T  SLL AC+S   L+ G + H       L+    +V   L+++Y
Sbjct: 221 LVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLY 280

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
            KC  V  + +V      + +V W A++A    NG A +A+ LF+ M +E  EP+D TL 
Sbjct: 281 GKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLI 340

Query: 419 SLLPAYAILADLQQAMNIHCYLIRY-GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           S++ + A+L  L     IH  +     F   + +   +I +Y KCG+LE A ++F  +P+
Sbjct: 341 SVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPL 400

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEM-VQSGVQPNEVTFTSALHACSHGGLLDEG 536
           + + +V W+ +I  Y  +G GE A+ LF+EM +  G +PN VTF S L ACSH G L++ 
Sbjct: 401 RTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQA 460

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYD-LIRTMPLKPTHAVWGALLGAC 595
            + F  M  +       DHY C+VDLLGRAGRL EA   L+R    +     W A L AC
Sbjct: 461 WEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSAC 520

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPA 655
            ++G++E  + AAK + ELEPEN    VLLS +Y+A  R  D   +R+ M   G++K   
Sbjct: 521 QMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAG 580

Query: 656 HSLIEVRN 663
            S IE+ N
Sbjct: 581 RSWIEINN 588



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 63/117 (53%), Gaps = 9/117 (7%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH---LRSSLVRAYGHVSNV---RILFD- 68
           +I +V   A   +++  K++HA I +S P F+    L ++++  YG   N+   R +F+ 
Sbjct: 339 LISVVDSCAVLGTLSLGKRIHARIRSS-PSFSQSLMLLNAVITMYGKCGNLELAREVFEC 397

Query: 69  -EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
             +  RS   +  +++ YAQNG   +++++F  ML  G   P+  T+  V+ AC+ L
Sbjct: 398 VPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHL 454


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 185/499 (37%), Positives = 293/499 (58%), Gaps = 4/499 (0%)

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +FD +    +  WNT++  +  ++  +  LV +  +   GV PD  +   +L A   L+ 
Sbjct: 60  LFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRN 119

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
               +    +V  G L  +    N+LV  +  CG V+ +R +F   +++DVV+WT++ING
Sbjct: 120 ENPFQFYAHIVKFG-LDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALING 178

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ-NLEC 346
              NG    AL  F  M+  GV  + +T+ S+L A + L  +  GR +H + ++   +  
Sbjct: 179 CLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIW 238

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
           +V V +AL+DMY+KC     + +VF     +  V W A++AG V     ++A+++F++M+
Sbjct: 239 DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI 298

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
           +E +EPN +T+ S L A A L  L Q   +H Y+ R       ++ T L+D+YSKCG ++
Sbjct: 299 IEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVD 358

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
            A  +F ++P KD  +  W+ +I G  M G   ++++LF +M++S VQPN VTF   L A
Sbjct: 359 EALLVFEKLPAKD--VYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSA 416

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           C+HGGL+DEGL+LF  M+ +++     DHY C+VDLLGRAGRL+EA   I +MP++PT  
Sbjct: 417 CAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPG 476

Query: 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646
           VWGAL   C+IH   ELGE     L +L+P + G Y+LL+ LYS  ++W+ A NVR +M 
Sbjct: 477 VWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMK 536

Query: 647 EKGLRKAPAHSLIEVRNIL 665
            KG+ K+PA S IEV  ++
Sbjct: 537 GKGVDKSPACSWIEVNGVI 555



 Score =  238 bits (606), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 160/514 (31%), Positives = 261/514 (50%), Gaps = 13/514 (2%)

Query: 9   LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVR-AYGHVSNVRIL 66
           +PK   L   ++  +    +     Q  + +ITSG    T   S L+R A   +    +L
Sbjct: 1   MPKLATLRHSILCCFHKCGTFDHLNQTTSILITSGLAHHTFFLSDLLRSATKDLGYTLLL 60

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYN--PDNYTYPIVIKACTDL 124
           FD ++    FL+NT+++ ++   AS     + +   RL  +   PD +T+P+++KA + L
Sbjct: 61  FDRLATPYIFLWNTIVRSFS---ASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKL 117

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
              +     +  ++  G D D FV N L++ + + G V  +R++F    +  VVSW  LI
Sbjct: 118 R-NENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALI 176

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL-VAGGRL 243
           +G  +N  A EAL  F  M  SGVE D  +VVSVL A   L+++  GR +H   V  GR+
Sbjct: 177 NGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRV 236

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
             ++   +ALVDMY KCG  ++A  VF+ M  R++V+W ++I GY      + AL +FQ 
Sbjct: 237 IWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQE 296

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M  EG+ PN  T+ S L+AC+ L  L +GR LH +  +  L     + TAL+DMY+KC  
Sbjct: 297 MIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGC 356

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           V  +  VF +   K   PW A++ G    G A  ++ LF QM+   V+PN  T   +L A
Sbjct: 357 VDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSA 416

Query: 424 YAILADLQQAMNIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
            A    + + + +   +I  Y     V+    ++D+  + G LE A K    +P++    
Sbjct: 417 CAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTP- 475

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
            VW  + +G  +H   E    +   +++  +QP+
Sbjct: 476 GVWGALFSGCMIHKAFELGEHIGNHLIK--LQPH 507



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/406 (33%), Positives = 202/406 (49%), Gaps = 22/406 (5%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAYGHVSN 62
           P  HT P       KL  +           Q +A I+  G  F   +++SLV A+ H   
Sbjct: 102 PDRHTFPLLLKAFSKLRNE--------NPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGY 153

Query: 63  V---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           V   R LF E +++    +  ++    +NG + ++L+ F+ M R      D  T   V+ 
Sbjct: 154 VDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEM-RSSGVEVDEVTVVSVLC 212

Query: 120 ACTDLAWRKLGIALHGRVLITGFDM-DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
           A   L     G  +HG  + +G  + D +VG+ L+ MY   G    A KVF+ M   ++V
Sbjct: 213 AAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLV 272

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           SW  LI+GY +    KEAL VF  M+  G+EP+ ++V S L AC  L  ++ GR +HE V
Sbjct: 273 SWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYV 332

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
              +LG N     ALVDMY KCG V+EA LVF+++  +DV  WT+MING A+ GD  ++L
Sbjct: 333 DRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSL 392

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI-KQNLECEVIVETALIDM 357
            LF  M    V+PN +T   +LSAC+    +  G  L    I    LE  V     ++D+
Sbjct: 393 NLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDL 452

Query: 358 YAKCNLVKLSFQVFARTSKKKTVP--WNAILAGCVHNGLARKAVEL 401
             +   ++ + + F  +   +  P  W A+ +GC    +  KA EL
Sbjct: 453 LGRAGRLEEAIK-FIESMPMEPTPGVWGALFSGC----MIHKAFEL 493



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 182/334 (54%), Gaps = 6/334 (1%)

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           L+FDR++   +  W +++  ++ +   +  L  +  ++  GV P+  T   LL A S L 
Sbjct: 59  LLFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLR 118

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
             +     +A  +K  L+ +  V+ +L+  +A C  V  S ++F  T+KK  V W A++ 
Sbjct: 119 N-ENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALIN 177

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG-FL 446
           GC+ NG A +A+E F +M    VE ++ T+ S+L A A+L D+     +H + +  G  +
Sbjct: 178 GCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVI 237

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
             V V + L+D+YSKCG  + A K+F+E+P   +++V W  +IAGY      + A+ +F+
Sbjct: 238 WDVYVGSALVDMYSKCGYCDDAVKVFNEMPT--RNLVSWGALIAGYVQCNRYKEALKVFQ 295

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           EM+  G++PN+ T TSAL AC+  G LD+G  L  + ++  +    +   T +VD+  + 
Sbjct: 296 EMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEY-VDRSKLGLNSKLGTALVDMYSKC 354

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           G +DEA  +   +P K  +  W A++    + G+
Sbjct: 355 GCVDEALLVFEKLPAKDVYP-WTAMINGLAMRGD 387


>gi|15233482|ref|NP_192346.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75214457|sp|Q9XE98.1|PP303_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g04370
 gi|4982476|gb|AAD36944.1|AF069441_4 hypothetical protein [Arabidopsis thaliana]
 gi|7267194|emb|CAB77905.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656985|gb|AEE82385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 209/671 (31%), Positives = 346/671 (51%), Gaps = 22/671 (3%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFT---HLRSSLVRAY--- 57
           P   T P        L++  A+ + ++    +H  ++ +G  F+   ++ SSLV  Y   
Sbjct: 44  PDTFTFPS-------LLKACASLQRLSFGLSIHQQVLVNG--FSSDFYISSSLVNLYAKF 94

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G +++ R +F+EM ER    +  ++  Y++ G   ++  + +  +R     P   T   +
Sbjct: 95  GLLAHARKVFEEMRERDVVHWTAMIGCYSRAGIVGEACSL-VNEMRFQGIKPGPVTLLEM 153

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +    ++   +    LH   +I GFD D  V N ++ +Y     V  A+ +FD M +  +
Sbjct: 154 LSGVLEITQLQ---CLHDFAVIYGFDCDIAVMNSMLNLYCKCDHVGDAKDLFDQMEQRDM 210

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSWNT+ISGY       E L +   M   G+ PD  +  + L   G + ++EMGRM+H  
Sbjct: 211 VSWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQ 270

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +       ++    AL+ MY+KCG    +  V + +  +DVV WT MI+G    G    A
Sbjct: 271 IVKTGFDVDMHLKTALITMYLKCGKEEASYRVLETIPNKDVVCWTVMISGLMRLGRAEKA 330

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L +F  M   G   +S  I S++++C+ L     G S+H + ++     +     +LI M
Sbjct: 331 LIVFSEMLQSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRHGYTLDTPALNSLITM 390

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA-T 416
           YAKC  +  S  +F R +++  V WNAI++G   N    KA+ LF +M  + V+  D+ T
Sbjct: 391 YAKCGHLDKSLVIFERMNERDLVSWNAIISGYAQNVDLCKALLLFEEMKFKTVQQVDSFT 450

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           + SLL A +    L     IHC +IR        V T L+D+YSKCG LE+A + F  I 
Sbjct: 451 VVSLLQACSSAGALPVGKLIHCIVIRSFIRPCSLVDTALVDMYSKCGYLEAAQRCFDSIS 510

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
            KD  +V W ++IAGYG HG G+ A+ ++ E + SG++PN V F + L +CSH G++ +G
Sbjct: 511 WKD--VVSWGILIAGYGFHGKGDIALEIYSEFLHSGMEPNHVIFLAVLSSCSHNGMVQQG 568

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
           L +F+ M+ +       +H  C+VDLL RA R+++A+   +    +P+  V G +L AC 
Sbjct: 569 LKIFSSMVRDFGVEPNHEHLACVVDLLCRAKRIEDAFKFYKENFTRPSIDVLGIILDACR 628

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
            +G  E+ ++  + + EL+P + G+YV L   ++A++RW D     + M   GL+K P  
Sbjct: 629 ANGKTEVEDIICEDMIELKPGDAGHYVKLGHSFAAMKRWDDVSESWNQMRSLGLKKLPGW 688

Query: 657 SLIEVRNILTA 667
           S IE+    T 
Sbjct: 689 SKIEMNGKTTT 699



 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 163/549 (29%), Positives = 287/549 (52%), Gaps = 13/549 (2%)

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           S+  +N+ +   + +G     L  F  ML   +  PD +T+P ++KAC  L     G+++
Sbjct: 10  STKYFNSHINHLSSHGDHKQVLSTFSSMLA-NKLLPDTFTFPSLLKACASLQRLSFGLSI 68

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H +VL+ GF  D ++ + L+ +Y  FG +  ARKVF+ M E  VV W  +I  Y +    
Sbjct: 69  HQQVLVNGFSSDFYISSSLVNLYAKFGLLAHARKVFEEMRERDVVHWTAMIGCYSRAGIV 128

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
            EA  + + M   G++P   +++ +L     + EI   + +H+         +IA  N++
Sbjct: 129 GEACSLVNEMRFQGIKPGPVTLLEMLSG---VLEITQLQCLHDFAVIYGFDCDIAVMNSM 185

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           +++Y KC  V +A+ +FD+M +RD+V+W +MI+GYA  G++   L L   M+ +G+RP+ 
Sbjct: 186 LNLYCKCDHVGDAKDLFDQMEQRDMVSWNTMISGYASVGNMSEILKLLYRMRGDGLRPDQ 245

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            T G+ LS   ++  L+ GR LH   +K   + ++ ++TALI MY KC   + S++V   
Sbjct: 246 QTFGASLSVSGTMCDLEMGRMLHCQIVKTGFDVDMHLKTALITMYLKCGKEEASYRVLET 305

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
              K  V W  +++G +  G A KA+ +F +ML    + +   + S++ + A L      
Sbjct: 306 IPNKDVVCWTVMISGLMRLGRAEKALIVFSEMLQSGSDLSSEAIASVVASCAQLGSFDLG 365

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
            ++H Y++R+G+         LI +Y+KCG L+ +  IF    + ++D+V W+ II+GY 
Sbjct: 366 ASVHGYVLRHGYTLDTPALNSLITMYAKCGHLDKSLVIFER--MNERDLVSWNAIISGYA 423

Query: 494 MHGHGETAVSLFKEMVQSGVQP-NEVTFTSALHACSHGGLLDEGLDLFNFMLENH-QTCS 551
            +     A+ LF+EM    VQ  +  T  S L ACS  G L  G  +   ++ +  + CS
Sbjct: 424 QNVDLCKALLLFEEMKFKTVQQVDSFTVVSLLQACSSAGALPVGKLIHCIVIRSFIRPCS 483

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG-EVAAKW 610
             D  T +VD+  + G L+ A     ++  K     WG L+     HG  ++  E+ +++
Sbjct: 484 LVD--TALVDMYSKCGYLEAAQRCFDSISWKDV-VSWGILIAGYGFHGKGDIALEIYSEF 540

Query: 611 LFE-LEPEN 618
           L   +EP +
Sbjct: 541 LHSGMEPNH 549


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 185/491 (37%), Positives = 286/491 (58%), Gaps = 3/491 (0%)

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M + ++VSW  +ISG  +N+   EA+  F  M   G  P   +  S + AC  L  IEMG
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           + +H L     +G  +   + L DMY KCG++ +A  VF+ M  +D V+WT+MI+GY+  
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G+   AL  F+ M  E V  +   + S L AC +L   K GRS+H+  +K   E ++ V 
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 352 TALIDMYAKCNLVKLSFQVFARTSK-KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
            AL DMY+K   ++ +  VF   S+ +  V +  ++ G V      K + +F ++  + +
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           EPN+ T +SL+ A A  A L+Q   +H  +++  F     VS+ L+D+Y KCG LE A +
Sbjct: 241 EPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQ 300

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
            F EI   D   + W+ +++ +G HG G+ A+ +F+ MV  GV+PN +TF S L  CSH 
Sbjct: 301 AFDEI--GDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHA 358

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           GL++EGLD F  M + +      +HY+C++DLLGRAGRL EA + I  MP +P    W +
Sbjct: 359 GLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCS 418

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
            LGAC IHG+ E+G++AA+ L +LEP+N G  VLLS +Y+  R+W+D  +VR  M +  +
Sbjct: 419 FLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNV 478

Query: 651 RKAPAHSLIEV 661
           +K P +S ++V
Sbjct: 479 KKLPGYSWVDV 489



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 130/432 (30%), Positives = 217/432 (50%), Gaps = 4/432 (0%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           M +R+   +  ++   +QN    ++++ F GM   GE  P  + +   I+AC  L   ++
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLGSIEM 59

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  +H   L  G   + FVG+ L  MY   G +  A KVF+ M     VSW  +I GY K
Sbjct: 60  GKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK 119

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
               +EAL+ F  M+   V  D   + S L ACG LK  + GR +H  V       +I  
Sbjct: 120 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFV 179

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSE-RDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
            NAL DMY K G +  A  VF   SE R+VV++T +I+GY     +   L +F  ++ +G
Sbjct: 180 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG 239

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           + PN  T  SL+ AC++   L++G  LHA  +K N + +  V + L+DMY KC L++ + 
Sbjct: 240 IEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAI 299

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           Q F        + WN++++    +GL + A+++F +M+   V+PN  T  SLL   +   
Sbjct: 300 QAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAG 359

Query: 429 DLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
            +++ ++    + + YG +   E  + +ID+  + G L+ A +  + +P  + +   W  
Sbjct: 360 LVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPF-EPNAFGWCS 418

Query: 488 IIAGYGMHGHGE 499
            +    +HG  E
Sbjct: 419 FLGACRIHGDKE 430


>gi|255559012|ref|XP_002520529.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540371|gb|EEF41942.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 192/574 (33%), Positives = 313/574 (54%), Gaps = 34/574 (5%)

Query: 97  MFLGMLRLGEY-NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAM 155
           +F  +LR G + NP  Y    V+  C   A   LGI LH  ++  GF  +  + + ++ M
Sbjct: 56  LFAHLLRNGSFSNP--YFINKVVSFCAKFASYDLGIQLHSTIIRMGFTSNVHICSAVVDM 113

Query: 156 YMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCA-- 213
           Y    E+++A +VF+ M E + V+WN+LI GY                    V P CA  
Sbjct: 114 YAKCSEIQSAHEVFNEMPERNDVTWNSLIFGYLN------------------VMPTCAMR 155

Query: 214 -----SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
                SV + L  C  L+    G  +H L        N+    AL+DMY KC  V+++  
Sbjct: 156 GVTSFSVSTCLVVCSQLEVRNFGAQVHGLSLKLGFDNNVFVGTALIDMYSKCDGVDDSWR 215

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VFD M +++VVTWT+M+  YA N     A+ L + M   G++ N +T  SLLS+ S   Y
Sbjct: 216 VFDYMVDKNVVTWTAMVTAYAQNEQPDEAMILVREMMRLGIKANYVTYNSLLSSFSGPKY 275

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKC--NLVKLSFQVFARTSKKKTVPWNAIL 386
           ++  + +H   I+  LEC + +   L+ +Y+KC  NL   + ++ +       + WNA++
Sbjct: 276 MQYCKQVHCSIIRCGLECNLYIAATLVTVYSKCTNNLEDFN-KISSGVQLSDQISWNAVI 334

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           AG  + GL   A++ F +M    ++ +  T  SLL A      +++   +H  +++ G+ 
Sbjct: 335 AGYSNLGLGEDALKCFCEMRHANIKMDFYTFTSLLGAIGAFLAIEEGREMHALIVKTGYA 394

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
           S V V  GL+ +Y++CG+++ + ++F    ++D D+V W+ ++ G   HG G  AV LF+
Sbjct: 395 SSVYVQNGLVSMYARCGAIDDSKRVF--WLMEDHDVVSWNALLTGCAHHGFGNEAVELFE 452

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS-RADHYTCIVDLLGR 565
           +M ++ ++PN  TF + L ACSH G +D+GL+ F+FM  +      R +HY  +VD+ GR
Sbjct: 453 QMRKTKIKPNSTTFLAVLSACSHVGSVDKGLEYFDFMRSDISLEPLRVEHYASVVDIFGR 512

Query: 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           AG L EA  +I  MP+ P  +V+ ALL AC++HGN E+   +A+ L EL P++P  Y+LL
Sbjct: 513 AGYLSEAEAIINCMPMDPGPSVYKALLSACLVHGNREIAVRSARKLLELWPDDPATYILL 572

Query: 626 SKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           S + +    W DA +VR +M ++G+RK P +S I
Sbjct: 573 SNMLATEGYWDDAADVRKLMCDRGVRKNPGYSWI 606



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 142/274 (51%), Gaps = 14/274 (5%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD M +++   +  ++  YAQN    +++ +   M+RLG    +  TY  ++ + +   
Sbjct: 216 VFDYMVDKNVVTWTAMVTAYAQNEQPDEAMILVREMMRLG-IKANYVTYNSLLSSFSGPK 274

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYM-------NFGEVKAARKVFDAMWEHSVV 178
           + +    +H  ++  G + + ++   L+ +Y        +F ++ +  ++ D       +
Sbjct: 275 YMQYCKQVHCSIIRCGLECNLYIAATLVTVYSKCTNNLEDFNKISSGVQLSDQ------I 328

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           SWN +I+GY      ++AL  F  M  + ++ D  +  S+L A G    IE GR +H L+
Sbjct: 329 SWNAVIAGYSNLGLGEDALKCFCEMRHANIKMDFYTFTSLLGAIGAFLAIEEGREMHALI 388

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
                  ++   N LV MY +CG++++++ VF  M + DVV+W +++ G A +G    A+
Sbjct: 389 VKTGYASSVYVQNGLVSMYARCGAIDDSKRVFWLMEDHDVVSWNALLTGCAHHGFGNEAV 448

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
            LF+ M+   ++PNS T  ++LSACS +  + +G
Sbjct: 449 ELFEQMRKTKIKPNSTTFLAVLSACSHVGSVDKG 482



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 99/222 (44%), Gaps = 34/222 (15%)

Query: 400 ELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459
           +LF  +L      N   +N ++   A  A     + +H  +IR GF S V + + ++D+Y
Sbjct: 55  DLFAHLLRNGSFSNPYFINKVVSFCAKFASYDLGIQLHSTIIRMGFTSNVHICSAVVDMY 114

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY-------GMHGHGETAVSL-------- 504
           +KC  ++SAH++F+E+P  +++ V W+ +I GY        M G    +VS         
Sbjct: 115 AKCSEIQSAHEVFNEMP--ERNDVTWNSLIFGYLNVMPTCAMRGVTSFSVSTCLVVCSQL 172

Query: 505 ----FKEMVQS-----GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
               F   V       G   N    T+ +   S    +D+   +F++M++ +        
Sbjct: 173 EVRNFGAQVHGLSLKLGFDNNVFVGTALIDMYSKCDGVDDSWRVFDYMVDKNVVT----- 227

Query: 556 YTCIVDLLGRAGRLDEAYDLIRTM---PLKPTHAVWGALLGA 594
           +T +V    +  + DEA  L+R M    +K  +  + +LL +
Sbjct: 228 WTAMVTAYAQNEQPDEAMILVREMMRLGIKANYVTYNSLLSS 269


>gi|255586014|ref|XP_002533676.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526427|gb|EEF28706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 726

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 210/645 (32%), Positives = 338/645 (52%), Gaps = 19/645 (2%)

Query: 27  KSIAGTKQLHAFIITSGPL---FTHLRSSLVRAYGHVSNVRI---LFDEMSERSSFLYNT 80
           K +   KQ+HA ++ S       +   + L+  Y   +++     +F  + E ++  +N 
Sbjct: 39  KDLRTLKQIHASLLVSTGFNESISFPSTKLISFYSKFNDLESAISVFSLLQEPNTLSWNL 98

Query: 81  VMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL-GIALHGRVLI 139
           +M+ +   G   ++L ++  M   G    D +T+P + +A   L    L G  +H   + 
Sbjct: 99  IMRTHLDFGLVTEALLLYKKMRESG-VKTDAFTFPTINRAVMSLKSDVLLGKMVHCDAMK 157

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
            GF  D +  N +I +Y   G V   R +FD M    +VSW ++ISGY        A  +
Sbjct: 158 LGFGYDLYFCNTMIEVYARCGCVYYGRVMFDEMSPRDLVSWTSMISGYVSEGNVFSAFEL 217

Query: 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVK 259
           F+ M +  +EP+  +++ +L  C        GR +H  +    L    +  N+++ MY  
Sbjct: 218 FNKM-RLEMEPNSVTLIVMLKGCYAYDNFSEGRQLHCYIIKNGLLIYGSVQNSILRMYSI 276

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
            GS  E   +F  +  RDV++W ++I  YAL GD    +  F  M+ E V  +S T+  +
Sbjct: 277 TGSAKEVESLFVEIYRRDVISWNTLIGFYALRGDAEEMVCGFNQMRGE-VALSSETLTLV 335

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           +S  + +  L  G  LH+++IK  L C+ ++  +L+D YAKC  ++ S Q+F     + +
Sbjct: 336 ISVFAKIGNLVEGEKLHSFSIKVGL-CDDVLLASLLDFYAKCGELRNSVQLFGEIPCRSS 394

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
             W  +++GC+ NG   +A+ LFRQM    V+     L SL+ A + L  LQ    IH Y
Sbjct: 395 STWKLMMSGCIQNGYFDEAIHLFRQMQASGVQLQAQILGSLVDACSHLGSLQLCKEIHGY 454

Query: 440 LIRYGFLSVVE-----VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
           L R  F  ++E     + T ++++Y +CGS+ SA + F+ +  KD   + W+ +I GYG+
Sbjct: 455 LTR-NFFYILEGDNIHLGTSILNMYIRCGSISSAREYFNRMVAKDN--ITWTSMIEGYGI 511

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD 554
           HG    A+ LF +M+   V PN VTF S L ACSH GL+ +G +LF  M          D
Sbjct: 512 HGMAIEALKLFNQMLVERVLPNRVTFLSLLSACSHSGLIRQGCELFLSMKWVFGMEPDLD 571

Query: 555 HYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614
           HYTC+VDLLGR G++ EA  +I  M +     +WGAL+ +C +HG+ ++GE AA+ L E+
Sbjct: 572 HYTCMVDLLGRCGKIKEALAMIIRMVVVADSRIWGALVASCRVHGDKKVGEFAAQRLLEM 631

Query: 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           E +N G Y LLS + + V +W + E VR V+ EK LRK P  S I
Sbjct: 632 ESDNVGYYTLLSNIQAMVGKWDEVEQVRKVIHEKDLRKTPGWSCI 676


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 202/548 (36%), Positives = 313/548 (57%), Gaps = 9/548 (1%)

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDM-DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           +++C      +LG  LH R++++G     TF+ N LI MY +  +V +A ++FDAM   +
Sbjct: 24  LQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPN 83

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           +VSW TL+SG  +N+  ++AL  F  M ++G+ P   ++ S   A   L     G  +H 
Sbjct: 84  LVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQLH- 142

Query: 237 LVAGGRLGKNIAAWNA--LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
              G RLG +   + A  L DMY K G + EA  VFD+M ++D V WT+MI+GYA NG++
Sbjct: 143 -CVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNL 201

Query: 295 RNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
             A+  F+ M+ EG V  +   + S+LSA   L      R++H+  +K   E EV V  A
Sbjct: 202 EAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNA 261

Query: 354 LIDMYAKC-NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           L DMYAK  ++   +  V         V   +++ G +      KA+ +F ++  + VEP
Sbjct: 262 LTDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEP 321

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           N+ T +S++   A+ A L+Q   +H  +I+   +S   VS+ L+D+Y KCG +  + ++F
Sbjct: 322 NEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLF 381

Query: 473 SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
            EI       + W+  I     HGHG  A+  F  M  SG++PN +TF S L ACSH GL
Sbjct: 382 KEIEYHTD--IAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGL 439

Query: 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
           +DEGL  F  M ++H    + +HY+CI+D+ GRAGRLDEA   I  MP+KP    W +LL
Sbjct: 440 VDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLL 499

Query: 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652
           GAC + GN ELGE+AA  + +LEP+N G +V LS +Y+++ +W+D + VR +M +  ++K
Sbjct: 500 GACRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKK 559

Query: 653 APAHSLIE 660
            P  S ++
Sbjct: 560 LPGFSWVD 567



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 150/473 (31%), Positives = 226/473 (47%), Gaps = 10/473 (2%)

Query: 35  LHAFIITSGPLF--THLRSSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNG 89
           LHA ++ SG     T L + L+  Y H ++V     LFD M   +   + T++    QN 
Sbjct: 39  LHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPNLVSWTTLVSGLTQNS 98

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              D+L  F  M R G   P  +      +A   LA R  G  LH   +  GFD + FV 
Sbjct: 99  MHRDALAAFSSMCRAG-LVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVA 157

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG-V 208
           + L  MY   G +  A +VFD M +   V+W  +I GY KN   + A++ F  M + G V
Sbjct: 158 SNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLV 217

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV-NEAR 267
             D   + SVL A G LK+  + R IH  V      + +A  NAL DMY K   + N AR
Sbjct: 218 GADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAAR 277

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           +V       +VV+ TS+I+GY     +  AL +F  ++ +GV PN  T  S++  C+   
Sbjct: 278 VVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQA 337

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            L++G  LHA  IK +L  +  V + L+DMY KC L+ LS Q+F        + WNA + 
Sbjct: 338 LLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAIN 397

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN-IHCYLIRYGFL 446
               +G  R+A+  F +M    + PN  T  SLL A +    + + +   +     +G  
Sbjct: 398 VLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIE 457

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
              E  + +ID+Y + G L+ A K   E+P+K  +   W  ++    M G+ E
Sbjct: 458 PKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVK-PNAYGWCSLLGACRMRGNKE 509



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 129/269 (47%), Gaps = 8/269 (2%)

Query: 32  TKQLHAFIITSG-PLFTHLRSSLVRAYGHVSNV----RILFDEMSERSSFLYNTVMKMYA 86
            + +H+ ++ SG      +R++L   Y   +++    R++  +    +     +++  Y 
Sbjct: 240 ARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGYI 299

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           +      +L MF+ + R G   P+ +T+  +IK C   A  + G  LH  V+ T    D+
Sbjct: 300 ETDCIEKALLMFIELRRQG-VEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDS 358

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
           FV + L+ MY   G +  + ++F  +  H+ ++WN  I+   ++ + +EA+  FD M  S
Sbjct: 359 FVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSS 418

Query: 207 GVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
           G+ P+  + VS+L AC +   ++ G +  + +     +      ++ ++DMY + G ++E
Sbjct: 419 GIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGRLDE 478

Query: 266 ARLVFDRMSER-DVVTWTSMINGYALNGD 293
           A      M  + +   W S++    + G+
Sbjct: 479 AEKFIGEMPVKPNAYGWCSLLGACRMRGN 507


>gi|302817788|ref|XP_002990569.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
 gi|300141737|gb|EFJ08446.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
          Length = 564

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 197/570 (34%), Positives = 313/570 (54%), Gaps = 15/570 (2%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V   R +F+ +   S F +N ++  Y  NG+   +L++F  M+ +     D  T+   
Sbjct: 6   GSVEEARAVFNSIKRSSCFSWNLMLGAYCNNGSGDQALELFKQMVDVHGIRADRVTFVTA 65

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
             AC+ +   + G   H R + +G +    + + L+ MY   G  + ARK+FD +   +V
Sbjct: 66  ATACSLVGSLEEGKQFHSRFVESGLESSLILDSALMNMYGRCGSAEEARKIFDRIPVKNV 125

Query: 178 VSWNTLISGYFKNAYAKEAL-VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V WN +I+ Y +N +  EAL + +D  LK    PD  + ++VL AC     +E GR+IH+
Sbjct: 126 VCWNVMIAAYAQNGHFSEALELYYDMNLK----PDRVTFLNVLHAC----TLESGRLIHQ 177

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            V    L ++    NALV+M+ KCGS+++A+ VFDR++ RDV++W ++++ Y   G  + 
Sbjct: 178 DVVSAGLERDKFVGNALVNMFGKCGSLSDAKRVFDRIAFRDVISWNALMSVYIQQGHRKE 237

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           A  LF+ M   G++PNS+T  SLL ACSSL  L   R +H     Q LE +  V   LI 
Sbjct: 238 AFELFKRMDKAGLQPNSVTYLSLLPACSSLEQL---REIHQELADQGLEQDEQVGNTLIT 294

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
            Y K +L + S  VF R  ++  V W  ++ G V +G   +A++L+R+M+VE V P+   
Sbjct: 295 AYNKFSL-EDSVAVFERMKRRSVVSWTCMIMGMVEHGYGGRALDLYREMVVEGVRPDAVA 353

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           L   L A   + +L +   IH  +     ++ V V+T ++++Y KCG    A  +F    
Sbjct: 354 LVCALDACTSVENLAEGRKIHRLVEGTTMVTDVFVATAVVNMYGKCGKFAEAEAVFQ--G 411

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           +K   +  W+ +I  Y  HGH   A+ L++ M  SG +P+ VT   AL ACSH GLLD  
Sbjct: 412 MKTTTVATWNSLIGAYAQHGHATDALKLYERMELSGTRPDGVTLLCALFACSHLGLLDRA 471

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
            + ++ M+E++Q  +   H+ C+VDL  RAG +DEA +LI +MP++P  + W ALL AC 
Sbjct: 472 REFYSGMVEDYQVEAVPAHFGCLVDLFCRAGWIDEAEELIASMPVRPHISAWTALLNACK 531

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLS 626
            H ++E G  AA    EL+      +V+LS
Sbjct: 532 AHNDMERGAWAACKAHELDSRRSSPFVVLS 561



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 151/477 (31%), Positives = 242/477 (50%), Gaps = 17/477 (3%)

Query: 155 MYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK-SGVEPDCA 213
           MY   G V+ AR VF+++   S  SWN ++  Y  N    +AL +F  M+   G+  D  
Sbjct: 1   MYGKCGSVEEARAVFNSIKRSSCFSWNLMLGAYCNNGSGDQALELFKQMVDVHGIRADRV 60

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           + V+   AC  +  +E G+  H       L  ++   +AL++MY +CGS  EAR +FDR+
Sbjct: 61  TFVTAATACSLVGSLEEGKQFHSRFVESGLESSLILDSALMNMYGRCGSAEEARKIFDRI 120

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
             ++VV W  MI  YA NG    AL L+  M    ++P+ +T  ++L AC+    L+ GR
Sbjct: 121 PVKNVVCWNVMIAAYAQNGHFSEALELYYDMN---LKPDRVTFLNVLHACT----LESGR 173

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            +H   +   LE +  V  AL++M+ KC  +  + +VF R + +  + WNA+++  +  G
Sbjct: 174 LIHQDVVSAGLERDKFVGNALVNMFGKCGSLSDAKRVFDRIAFRDVISWNALMSVYIQQG 233

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
             ++A ELF++M    ++PN  T  SLLPA    + L+Q   IH  L   G     +V  
Sbjct: 234 HRKEAFELFKRMDKAGLQPNSVTYLSLLPA---CSSLEQLREIHQELADQGLEQDEQVGN 290

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            LI  Y+K  SLE +  +F    +K + +V W+ +I G   HG+G  A+ L++EMV  GV
Sbjct: 291 TLITAYNKF-SLEDSVAVFER--MKRRSVVSWTCMIMGMVEHGYGGRALDLYREMVVEGV 347

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573
           +P+ V    AL AC+    L EG  +   ++E     +     T +V++ G+ G+  EA 
Sbjct: 348 RPDAVALVCALDACTSVENLAEGRKIHR-LVEGTTMVTDVFVATAVVNMYGKCGKFAEAE 406

Query: 574 DLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630
            + + M    T A W +L+GA   HG+     +      EL    P    LL  L++
Sbjct: 407 AVFQGMK-TTTVATWNSLIGAYAQHGHA-TDALKLYERMELSGTRPDGVTLLCALFA 461


>gi|413933941|gb|AFW68492.1| hypothetical protein ZEAMMB73_143921 [Zea mays]
          Length = 564

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 202/544 (37%), Positives = 308/544 (56%), Gaps = 9/544 (1%)

Query: 119 KACTDLAWRKLGIALHGRVLITGFDM-DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           ++C      + G ALH R+L+TG     TF+ N LI MY +  +  +A +VF  +   ++
Sbjct: 25  QSCGRTGDIRRGRALHARLLLTGAAAASTFLANHLITMYSHCADAVSAVRVFGVVPRPNL 84

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSW TL+SG  +N+   +AL  F  M ++ + P   ++ S   A   L     G  +H +
Sbjct: 85  VSWTTLVSGLVQNSMHHDALAAFAAMRRAHIAPTQFALSSAARAAAALSAPRPGTQLHCI 144

Query: 238 VAGGRLG--KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
             G RLG    +   + L DMY KCG ++EA  VFD+M ++D VTWT+MI+GYA NG + 
Sbjct: 145 --GIRLGFDNELFVASNLADMYSKCGLLHEACRVFDQMPQKDAVTWTTMIDGYAKNGSLE 202

Query: 296 NALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
            A+ +F+ M+ EG V  +     S LSA   L     GRSLH   IK   E E +V  AL
Sbjct: 203 AAILIFRDMKCEGLVGADQHVFCSALSASGGLKDGWFGRSLHCCIIKAGFELETVVRNAL 262

Query: 355 IDMYAKC-NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           +DMYAK  +L   S  V         V   +++ G V  G   +A+E + ++  + VEPN
Sbjct: 263 LDMYAKSGDLENASRVVSIDPGGWNVVSATSLIDGYVEAGRIEEALETYTELGRQGVEPN 322

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
           + T  S++   A+   L+Q   +H  +++   +S   V + L+ +Y  CG +  + ++F+
Sbjct: 323 EFTFASMIKGCAMHDLLEQGAQLHAQVLKTNLISDSFVGSTLVYMYGNCGLISLSLQLFN 382

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
           EI  + +  + W+ +I  Y  HGHG  A+  F  M  SG++PN +TF   L ACSH GL+
Sbjct: 383 EIGYRTE--IAWNAVINVYAQHGHGWGAIQAFDRMTSSGIRPNHITFVCLLTACSHAGLV 440

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
           DEGL  F+ M + H    +A+HY+CI+D+ GRAGRLDEA   I  MP+KP+   W +LLG
Sbjct: 441 DEGLGYFHSMKDAHGIEPKAEHYSCIIDMYGRAGRLDEAEKFISEMPVKPSAYAWCSLLG 500

Query: 594 ACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKA 653
           AC + GN ELGEVAA+ L +L+P N G ++ LS +Y+++ +W+D + V+  M +  ++K 
Sbjct: 501 ACRMQGNKELGEVAAQNLMKLDPNNTGIHISLSGIYTSLGQWEDVKAVKKSMKDISIKKL 560

Query: 654 PAHS 657
           P  S
Sbjct: 561 PGFS 564



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 146/488 (29%), Positives = 225/488 (46%), Gaps = 12/488 (2%)

Query: 21  QQYAATKSIAGTKQLHAFIITSGPLF--THLRSSLVRAYGH----VSNVRILFDEMSERS 74
           Q    T  I   + LHA ++ +G     T L + L+  Y H    VS VR+ F  +   +
Sbjct: 25  QSCGRTGDIRRGRALHARLLLTGAAAASTFLANHLITMYSHCADAVSAVRV-FGVVPRPN 83

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
              + T++    QN   HD+L  F  M R     P  +      +A   L+  + G  LH
Sbjct: 84  LVSWTTLVSGLVQNSMHHDALAAFAAMRR-AHIAPTQFALSSAARAAAALSAPRPGTQLH 142

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
              +  GFD + FV + L  MY   G +  A +VFD M +   V+W T+I GY KN   +
Sbjct: 143 CIGIRLGFDNELFVASNLADMYSKCGLLHEACRVFDQMPQKDAVTWTTMIDGYAKNGSLE 202

Query: 195 EALVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
            A+++F  M   G V  D     S L A G LK+   GR +H  +            NAL
Sbjct: 203 AAILIFRDMKCEGLVGADQHVFCSALSASGGLKDGWFGRSLHCCIIKAGFELETVVRNAL 262

Query: 254 VDMYVKCGSV-NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           +DMY K G + N +R+V       +VV+ TS+I+GY   G +  AL  +  +  +GV PN
Sbjct: 263 LDMYAKSGDLENASRVVSIDPGGWNVVSATSLIDGYVEAGRIEEALETYTELGRQGVEPN 322

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
             T  S++  C+    L++G  LHA  +K NL  +  V + L+ MY  C L+ LS Q+F 
Sbjct: 323 EFTFASMIKGCAMHDLLEQGAQLHAQVLKTNLISDSFVGSTLVYMYGNCGLISLSLQLFN 382

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
               +  + WNA++     +G    A++ F +M    + PN  T   LL A +    + +
Sbjct: 383 EIGYRTEIAWNAVINVYAQHGHGWGAIQAFDRMTSSGIRPNHITFVCLLTACSHAGLVDE 442

Query: 433 AMN-IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
            +   H     +G     E  + +ID+Y + G L+ A K  SE+P+K      W  ++  
Sbjct: 443 GLGYFHSMKDAHGIEPKAEHYSCIIDMYGRAGRLDEAEKFISEMPVK-PSAYAWCSLLGA 501

Query: 492 YGMHGHGE 499
             M G+ E
Sbjct: 502 CRMQGNKE 509



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 138/291 (47%), Gaps = 10/291 (3%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNV-RILFDEMSERSSFLYNTVMKMYAQ 87
           + LH  II +G  L T +R++L+  Y   G + N  R++  +    +     +++  Y +
Sbjct: 241 RSLHCCIIKAGFELETVVRNALLDMYAKSGDLENASRVVSIDPGGWNVVSATSLIDGYVE 300

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
            G   ++L+ +  + R G   P+ +T+  +IK C      + G  LH +VL T    D+F
Sbjct: 301 AGRIEEALETYTELGRQG-VEPNEFTFASMIKGCAMHDLLEQGAQLHAQVLKTNLISDSF 359

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           VG+ L+ MY N G +  + ++F+ +   + ++WN +I+ Y ++ +   A+  FD M  SG
Sbjct: 360 VGSTLVYMYGNCGLISLSLQLFNEIGYRTEIAWNAVINVYAQHGHGWGAIQAFDRMTSSG 419

Query: 208 VEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           + P+  + V +L AC +   ++ G    H +     +      ++ ++DMY + G ++EA
Sbjct: 420 IRPNHITFVCLLTACSHAGLVDEGLGYFHSMKDAHGIEPKAEHYSCIIDMYGRAGRLDEA 479

Query: 267 RLVFDRMSER-DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
                 M  +     W S++    + G+    LG         + PN+  I
Sbjct: 480 EKFISEMPVKPSAYAWCSLLGACRMQGN--KELGEVAAQNLMKLDPNNTGI 528


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 199/607 (32%), Positives = 311/607 (51%), Gaps = 4/607 (0%)

Query: 58   GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
            G V +   LFD M E  +  +N ++ MY+  G       +F  M   G   PD  T   +
Sbjct: 496  GRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHG-LRPDATTLCSL 554

Query: 118  IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
            +  C        G  +H   L +  D    V N L+ MY   G++  A  +F  M    +
Sbjct: 555  MSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDL 614

Query: 178  VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
            +SWNT+IS Y +N  + +AL     +  +   P+  +  S L AC     +  G+M+H +
Sbjct: 615  ISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAI 674

Query: 238  VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
            V    L +N+   N+L+ MY KC S+ +A  VF  M   D+V++  +I GYA+  D   A
Sbjct: 675  VLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKA 734

Query: 298  LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKR-GRSLHAWTIKQNLECEVIVETALID 356
            + +F  M+  G++PN +T+ ++  + +S   L   GR LHA+ I+     +  V  +LI 
Sbjct: 735  MQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLIT 794

Query: 357  MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
            MYAKC  ++ S  +F   + K  V WNAI+A  V  G   +A++LF  M     + +   
Sbjct: 795  MYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVC 854

Query: 417  LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
            L   L + A LA L++ M +H   ++ G  S   V    +D+Y KCG ++   ++  +  
Sbjct: 855  LAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQA 914

Query: 477  IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
            I+ +    W+ +I+GY  +G+ + A   FK+MV +G +P+ VTF + L ACSH GL+D+G
Sbjct: 915  IRPQQ--CWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKG 972

Query: 537  LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
            +D +N M  +        H  CIVDLLGR GR  EA   I  MP+ P   +W +LL +  
Sbjct: 973  IDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSSR 1032

Query: 597  IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
             H N+E+G   AK L EL+P +   YVLLS LY+   RW D + +R  M    + K PA 
Sbjct: 1033 THKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTININKRPAC 1092

Query: 657  SLIEVRN 663
            S ++++N
Sbjct: 1093 SWLKLKN 1099



 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 184/623 (29%), Positives = 306/623 (49%), Gaps = 16/623 (2%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAYGH---VSNVRILFDEMS 71
           ++   ++    + IA    +HA    +G +   ++ ++L+  YG    VS+ + LF EM 
Sbjct: 349 LVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMP 408

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
           ER+   +  +M   + NG   ++L+ +  M R G     N  +  V+  C  L     G+
Sbjct: 409 ERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNAN-AFATVVSLCGSLENEVPGL 467

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +  +V+++G      V N LI M+ N G V  A K+FD M EH  +SWN +IS Y    
Sbjct: 468 QVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQG 527

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
              +  +VF  M   G+ PD  ++ S++  C        G  IH L     L  ++   N
Sbjct: 528 ICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVIN 587

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           ALV+MY   G +++A  +F  MS RD+++W +MI+ Y  N +  +AL     +      P
Sbjct: 588 ALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESP 647

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           N LT  S L ACSS   L  G+ +HA  ++ +L+  ++V  +LI MY KCN ++ + +VF
Sbjct: 648 NHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVF 707

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
                   V +N ++ G        KA+++F  M    ++PN  T+ ++  ++A   DL 
Sbjct: 708 QSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLH 767

Query: 432 Q-AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
                +H Y+IR GFLS   V+  LI +Y+KCG+LES+  IF+   I +K+IV W+ IIA
Sbjct: 768 NYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNS--ITNKNIVSWNAIIA 825

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
                GHGE A+ LF +M  +G + + V     L +C+    L+EG+ L    +++    
Sbjct: 826 ANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGMKSGLD- 884

Query: 551 SRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAA 608
             +D Y     +D+ G+ G++DE   ++    ++P    W  L+     +G  +  E   
Sbjct: 885 --SDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQ-CWNTLISGYAKYGYFKEAEETF 941

Query: 609 KWLFELEPENPGNYVLLSKLYSA 631
           K +  +      +YV    L SA
Sbjct: 942 KQM--VATGRKPDYVTFVALLSA 962



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 148/559 (26%), Positives = 266/559 (47%), Gaps = 22/559 (3%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LFDEM++R+   + T +    + G+   + +M  GM   G      +    ++ AC    
Sbjct: 299 LFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREPG-VPLSGFALASLVTACERRG 357

Query: 126 WRK---LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT 182
             +    G A+H      G   + ++G  L+ +Y + G V  A+++F  M E +VVSW  
Sbjct: 358 RDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTA 417

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           L+     N Y +EAL  +  M + GV  +  +  +V+  CG L+    G  +   V    
Sbjct: 418 LMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSG 477

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
           L   ++  N+L+ M+   G V++A  +FDRM E D ++W +MI+ Y+  G       +F 
Sbjct: 478 LQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFS 537

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            M+  G+RP++ T+ SL+S C+S  +   G  +H+  ++ +L+  V V  AL++MY+   
Sbjct: 538 DMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAG 597

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            +  +  +F   S++  + WN +++  V N  +  A++   Q+      PN  T +S L 
Sbjct: 598 KLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALG 657

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A +    L     +H  +++      + V   LI +Y KC S+E A K+F  +P    DI
Sbjct: 658 ACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPT--HDI 715

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
           V ++V+I GY +   G  A+ +F  M  +G++PN +T  +      HG       DL N+
Sbjct: 716 VSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINI-----HGSFASSN-DLHNY 769

Query: 543 MLENHQTCSR----ADHYTC--IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
               H    R    +D Y    ++ +  + G L+ + ++  ++  K     W A++ A V
Sbjct: 770 GRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNI-VSWNAIIAANV 828

Query: 597 IHGNVELGEVAAKWLFELE 615
             G+   GE A K   +++
Sbjct: 829 QLGH---GEEALKLFIDMQ 844



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 119/458 (25%), Positives = 214/458 (46%), Gaps = 17/458 (3%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR---KVFDAMWEHSVVSWNTLISGYFK 189
           +HG  +     +  F  N L+A Y    +  AA     +FD M + +  +W T +SG  +
Sbjct: 261 IHGLAVRLALPLSAFHRNTLLAFYFRQRDASAAAAALHLFDEMADRTPSTWYTAVSGCVR 320

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC---GYLKEIEMGRMIHELVAGGRLGKN 246
                +A  +   M + GV     ++ S++ AC   G  + I  G  IH L     L  N
Sbjct: 321 CGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRGRDEGIACGAAIHALTHRAGLMGN 380

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           +    AL+ +Y   G V++A+ +F  M ER+VV+WT+++   + NG +  AL  ++ M+ 
Sbjct: 381 VYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMRR 440

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
           +GV  N+    +++S C SL     G  + +  I   L+ +V V  +LI M+     V  
Sbjct: 441 DGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHD 500

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           + ++F R  +  T+ WNA+++   H G+  K   +F  M    + P+  TL SL+   A 
Sbjct: 501 AEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCAS 560

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
                    IH   +R    S V V   L+++YS  G L  A  +F    +  +D++ W+
Sbjct: 561 SDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWN--MSRRDLISWN 618

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG----LDLFNF 542
            +I+ Y  + +   A+    ++  +   PN +TF+SAL ACS  G L +G      +   
Sbjct: 619 TMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQL 678

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580
            L+ +     +     ++ + G+   +++A  + ++MP
Sbjct: 679 SLQRNLLVGNS-----LITMYGKCNSMEDAEKVFQSMP 711


>gi|356509887|ref|XP_003523674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Glycine max]
          Length = 750

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 211/652 (32%), Positives = 349/652 (53%), Gaps = 24/652 (3%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GHV 60
           P+H TLP        +V   A    +     LHA    +G LF H  +S V  Y   G +
Sbjct: 104 PNHFTLPI-------VVSAAAHLTLLPHGASLHALASKTG-LF-HSSASFVSLYSRCGRM 154

Query: 61  SNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFL---GMLRLGEYNPDNYTYPIV 117
              R +FDE+ +R    +  ++  +  NG     L+      G++   E  P+  T+   
Sbjct: 155 ELARKVFDEIPKRDVVAWTALIIGHVHNGEPEKGLRCLRHVHGVVEDDE-KPNAKTWEGG 213

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
             AC +L     G  LHG V+  G  + +F+ + ++ MY   G  + A + F  +    +
Sbjct: 214 FLACGNLGAVSEGSCLHGVVVKNG--VASFIQSSVLDMYSKCGVPREAYRSFCEVIHKDL 271

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           + W ++I  Y +     E L +F  M ++ + PD   V  VL   G   ++  G+  H +
Sbjct: 272 LCWTSVIGVYARIGMMGECLRLFREMQENEIRPDGVVVGCVLSGFGNSMDVFQGKAFHGV 331

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +       +    ++L+ MY K G ++ A  +F  + +     W  M+ GY   G+    
Sbjct: 332 IIRRYYVDDEKVNDSLLFMYCKFGMLSLAERIFP-LCQGSGDGWNFMVFGYGKVGENVKC 390

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI-VETALID 356
           + LF+ MQ+ G+   ++ I S +++C+ L  +  GRS+H   IK  L+ + I V  +L++
Sbjct: 391 VELFREMQWLGIHSETIGIASAIASCAQLGAVNLGRSIHCNVIKGFLDGKNISVTNSLVE 450

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY KC  +  ++++F  TS+   V WN +++  VH     +AV LF +M+ E  +PN AT
Sbjct: 451 MYGKCGKMTFAWRIF-NTSETDVVSWNTLISSHVHIKQHEEAVNLFSKMVREDQKPNTAT 509

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           L  +L A + LA L++   +HCY+   GF   + + T LID+Y+KCG L+ +  +F  + 
Sbjct: 510 LVVVLSACSHLASLEKGERVHCYINESGFTLNLPLGTALIDMYAKCGQLQKSRMVFDSM- 568

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
             +KD++ W+ +I+GYGM+G+ E+A+ +F+ M +S V PN +TF S L AC+H GL++EG
Sbjct: 569 -MEKDVICWNAMISGYGMNGYAESALEIFQHMEESNVMPNGITFLSLLSACAHAGLVEEG 627

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
             +F  M +++       HYTC+VDLLGR G + EA  ++ +MP+ P   VWGALLG C 
Sbjct: 628 KYMFARM-KSYSVNPNLKHYTCMVDLLGRYGNVQEAEAMVLSMPISPDGGVWGALLGHCK 686

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
            H  +E+G   AK+  +LEPEN G Y++++ +YS + RW++AENVR  M E+
Sbjct: 687 THNQIEMGIRIAKYAIDLEPENDGYYIIMANMYSFIGRWEEAENVRRTMKER 738



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 159/581 (27%), Positives = 280/581 (48%), Gaps = 27/581 (4%)

Query: 34  QLHAFIITSG---PLFTHLRSSLVRAYGHVSN----VRILFDEMSERSSFLYNTVMKMYA 86
           + HA  +TSG    LF  + S L+  Y  ++N       LF  +  + +FLYN+ +K   
Sbjct: 25  RFHALTVTSGHSTNLF--MASKLISLYDSLNNDPSSCSTLFHSLPSKDTFLYNSFLKSLF 82

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
                   L +F  M R    +P+++T PIV+ A   L     G +LH     TG    +
Sbjct: 83  SRSLFPRVLSLFSHM-RASNLSPNHFTLPIVVSAAAHLTLLPHGASLHALASKTGLFHSS 141

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF---DWM 203
                 +++Y   G ++ ARKVFD + +  VV+W  LI G+  N   ++ L        +
Sbjct: 142 ---ASFVSLYSRCGRMELARKVFDEIPKRDVVAWTALIIGHVHNGEPEKGLRCLRHVHGV 198

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
           ++   +P+  +      ACG L  +  G  +H +V    +   I +  +++DMY KCG  
Sbjct: 199 VEDDEKPNAKTWEGGFLACGNLGAVSEGSCLHGVVVKNGVASFIQS--SVLDMYSKCGVP 256

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
            EA   F  +  +D++ WTS+I  YA  G +   L LF+ MQ   +RP+ + +G +LS  
Sbjct: 257 REAYRSFCEVIHKDLLCWTSVIGVYARIGMMGECLRLFREMQENEIRPDGVVVGCVLSGF 316

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
            +   + +G++ H   I++    +  V  +L+ MY K  ++ L+ ++F    +     WN
Sbjct: 317 GNSMDVFQGKAFHGVIIRRYYVDDEKVNDSLLFMYCKFGMLSLAERIFP-LCQGSGDGWN 375

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
            ++ G    G   K VELFR+M    +      + S + + A L  +    +IHC +I+ 
Sbjct: 376 FMVFGYGKVGENVKCVELFREMQWLGIHSETIGIASAIASCAQLGAVNLGRSIHCNVIK- 434

Query: 444 GFLS--VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           GFL    + V+  L+++Y KCG +  A +IF+     + D+V W+ +I+ +      E A
Sbjct: 435 GFLDGKNISVTNSLVEMYGKCGKMTFAWRIFN---TSETDVVSWNTLISSHVHIKQHEEA 491

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561
           V+LF +MV+   +PN  T    L ACSH   L++G  +  ++ E+  T +     T ++D
Sbjct: 492 VNLFSKMVREDQKPNTATLVVVLSACSHLASLEKGERVHCYINESGFTLNLPLG-TALID 550

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           +  + G+L ++  +  +M  K     W A++    ++G  E
Sbjct: 551 MYAKCGQLQKSRMVFDSMMEKDV-ICWNAMISGYGMNGYAE 590


>gi|297841915|ref|XP_002888839.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334680|gb|EFH65098.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 682

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 205/616 (33%), Positives = 321/616 (52%), Gaps = 53/616 (8%)

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI-------KACTDLAWRKLGIALHGRVL 138
           A +G  HD+ K F  +LRL + +P   +  +V+        AC D+     G+ +H   +
Sbjct: 14  ASHGHLHDAFKTF-SLLRL-QSSPSAVSGDVVLHSAASLLSACVDVLAFVPGLQIHAHCV 71

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
            +G +  + +   L+  Y  F   + A+ + +       + WN LI+ Y KN   +E + 
Sbjct: 72  SSGVEYHSALVPKLVTFYSAFNLHREAQSINENSDILHPLPWNVLIASYAKNELFEEVVA 131

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
            +  M+  G+ PD  +  SVL ACG   ++  GR++H  +       ++   NAL+ MY 
Sbjct: 132 AYKRMVSKGIRPDAFTYPSVLKACGETLDVASGRVVHGSIEVSSYKCSLYVCNALISMYK 191

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT--- 315
           + G+V  AR +FD MSERD V+W ++IN YA  G    A  LF  M+F GV  + +T   
Sbjct: 192 RFGNVGIARRLFDHMSERDAVSWNAVINCYASVGMWSEAFELFDKMRFSGVEVSVITWNI 251

Query: 316 -----------IGSL---------------------LSACSSLYYLKRGRSLHAWTIKQN 343
                      +G+L                     L ACS +  ++ G+ +H   I ++
Sbjct: 252 ISGGYLHTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGLAIHRS 311

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
            +    V   LI MY+KC+ ++ +F VF +T +     WN+I++G      + +A  L R
Sbjct: 312 YDGIDNVRNTLITMYSKCDDLRNAFIVFQKTEENSLCTWNSIISGYAQVNKSEEASYLLR 371

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG-FLSVVEVSTGLIDIYSKC 462
           +ML+   +PN  TL S+LP  A +A+LQ     HCY++R   F     +   L+D+Y+K 
Sbjct: 372 EMLLAGFQPNFITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKS 431

Query: 463 GSLESAHKI---FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
           G + +A ++    SEI     D V ++ +I GYG  G G  A++LF EM++SG++P+ VT
Sbjct: 432 GKIVAAKQVSNLMSEI-----DEVTYTSLIDGYGNQGEGRVALALFDEMIRSGIKPDPVT 486

Query: 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
             + L ACSH  L+ EG  LF  M   +       H++C+VDL GRAG L +A D+I  M
Sbjct: 487 MVAVLSACSHSKLVHEGQRLFMKMQPKYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHRM 546

Query: 580 PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAE 639
           P +P+ A W  LL AC IHGN E+G+ AA+ L E++PENPG YVL++ +Y+    W    
Sbjct: 547 PYEPSGATWATLLNACHIHGNTEIGKWAAEKLLEMKPENPGYYVLIANMYATAGSWSKLA 606

Query: 640 NVRDVMDEKGLRKAPA 655
            VR +M + G+RK P 
Sbjct: 607 EVRTIMRDLGVRKDPG 622



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 183/382 (47%), Gaps = 51/382 (13%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFL------------ 99
           S+ + +G+V   R LFD MSER +  +N V+  YA  G   ++ ++F             
Sbjct: 188 SMYKRFGNVGIARRLFDHMSERDAVSWNAVINCYASVGMWSEAFELFDKMRFSGVEVSVI 247

Query: 100 -------GMLRLGEY---------------NPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
                  G L  G Y               + D     I +KAC+ +   +LG  +HG  
Sbjct: 248 TWNIISGGYLHTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGLA 307

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           +   +D    V N LI MY    +++ A  VF    E+S+ +WN++ISGY +   ++EA 
Sbjct: 308 IHRSYDGIDNVRNTLITMYSKCDDLRNAFIVFQKTEENSLCTWNSIISGYAQVNKSEEAS 367

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA-WNALVDM 256
            +   ML +G +P+  ++ S+LP C  +  ++ G+  H  +   +  K+    WN+LVD+
Sbjct: 368 YLLREMLLAGFQPNFITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDV 427

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y K G +  A+ V + MSE D VT+TS+I+GY   G+ R AL LF  M   G++P+ +T+
Sbjct: 428 YAKSGKIVAAKQVSNLMSEIDEVTYTSLIDGYGNQGEGRVALALFDEMIRSGIKPDPVTM 487

Query: 317 GSLLSACSSLYYLKRGRSLH-----AWTIK---QNLECEVIVETALIDMYAKCNLVKLSF 368
            ++LSACS    +  G+ L       + I+   Q+  C       ++D+Y +   +  + 
Sbjct: 488 VAVLSACSHSKLVHEGQRLFMKMQPKYGIRPCLQHFSC-------MVDLYGRAGFLAKAK 540

Query: 369 QVFARTSKKKT-VPWNAILAGC 389
            +  R   + +   W  +L  C
Sbjct: 541 DIIHRMPYEPSGATWATLLNAC 562



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 139/270 (51%), Gaps = 8/270 (2%)

Query: 33  KQLHAFII-TSGPLFTHLRSSLVRAYGHVSNVR---ILFDEMSERSSFLYNTVMKMYAQN 88
           K++H   I  S     ++R++L+  Y    ++R   I+F +  E S   +N+++  YAQ 
Sbjct: 301 KEIHGLAIHRSYDGIDNVRNTLITMYSKCDDLRNAFIVFQKTEENSLCTWNSIISGYAQV 360

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG-FDMDTF 147
             S ++  +   ML  G + P+  T   ++  C  +A  + G   H  +L    F   T 
Sbjct: 361 NKSEEASYLLREMLLAG-FQPNFITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTM 419

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           + N L+ +Y   G++ AA++V + M E   V++ +LI GY      + AL +FD M++SG
Sbjct: 420 LWNSLVDVYAKSGKIVAAKQVSNLMSEIDEVTYTSLIDGYGNQGEGRVALALFDEMIRSG 479

Query: 208 VEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           ++PD  ++V+VL AC + K +  G R+  ++     +   +  ++ +VD+Y + G + +A
Sbjct: 480 IKPDPVTMVAVLSACSHSKLVHEGQRLFMKMQPKYGIRPCLQHFSCMVDLYGRAGFLAKA 539

Query: 267 RLVFDRMS-ERDVVTWTSMINGYALNGDVR 295
           + +  RM  E    TW +++N   ++G+  
Sbjct: 540 KDIIHRMPYEPSGATWATLLNACHIHGNTE 569


>gi|15225505|ref|NP_181492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099847|sp|O80647.1|PP195_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g39620
 gi|3355489|gb|AAC27851.1| hypothetical protein [Arabidopsis thaliana]
 gi|330254604|gb|AEC09698.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 836

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 205/631 (32%), Positives = 335/631 (53%), Gaps = 21/631 (3%)

Query: 35  LHAFIITSGPLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGAS 91
           LH  +I  G +F    S L+  Y + +++     +F+E+  +    + T+M  YA NG  
Sbjct: 223 LHGLVIKKGFIFA-FSSGLIDMYCNCADLYAAESVFEEVWRKDESSWGTMMAAYAHNGFF 281

Query: 92  HDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNC 151
            + L++F  ++R  +   +       ++A   +     GIA+H   +  G   D  V   
Sbjct: 282 EEVLELF-DLMRNYDVRMNKVAAASALQAAAYVGDLVKGIAIHDYAVQQGLIGDVSVATS 340

Query: 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211
           L++MY   GE++ A ++F  + +  VVSW+ +I+ Y +     EA+ +F  M++  ++P+
Sbjct: 341 LMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISLFRDMMRIHIKPN 400

Query: 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFD 271
             ++ SVL  C  +    +G+ IH       +   +    A++ MY KCG  + A   F+
Sbjct: 401 AVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETATAVISMYAKCGRFSPALKAFE 460

Query: 272 RMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKR 331
           R+  +D V + ++  GY   GD   A  +++ M+  GV P+S T+  +L  C+      R
Sbjct: 461 RLPIKDAVAFNALAQGYTQIGDANKAFDVYKNMKLHGVCPDSRTMVGMLQTCAFCSDYAR 520

Query: 332 GRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCV 390
           G  ++   IK   + E  V  ALI+M+ KC+ +  +  +F +   +K TV WN ++ G +
Sbjct: 521 GSCVYGQIIKHGFDSECHVAHALINMFTKCDALAAAIVLFDKCGFEKSTVSWNIMMNGYL 580

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
            +G A +AV  FRQM VE  +PN  T  +++ A A L+ L+  M++H  LI+ GF S   
Sbjct: 581 LHGQAEEAVATFRQMKVEKFQPNAVTFVNIVRAAAELSALRVGMSVHSSLIQCGFCSQTP 640

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           V   L+D+Y+KCG +ES+ K F  I I +K IV W+ +++ Y  HG    AVSLF  M +
Sbjct: 641 VGNSLVDMYAKCGMIESSEKCF--IEISNKYIVSWNTMLSAYAAHGLASCAVSLFLSMQE 698

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
           + ++P+ V+F S L AC H GL++EG  +F  M E H+  +  +HY C+VDLLG+AG   
Sbjct: 699 NELKPDSVSFLSVLSACRHAGLVEEGKRIFEEMGERHKIEAEVEHYACMVDLLGKAGLFG 758

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630
           EA +++R M +K +  VWGALL +  +H N+ L   A   L +LEP NP +       YS
Sbjct: 759 EAVEMMRRMRVKTSVGVWGALLNSSRMHCNLWLSNAALCQLVKLEPLNPSH-------YS 811

Query: 631 AVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
             RR  +  NV  +      +K PA S IEV
Sbjct: 812 QDRRLGEVNNVSRI------KKVPACSWIEV 836



 Score =  258 bits (658), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 167/572 (29%), Positives = 287/572 (50%), Gaps = 11/572 (1%)

Query: 34  QLHAFIITSGPLFTHLRSSLVRAYGHVSN---VRILFDEMSERSSFLYNTVMKMYAQNGA 90
           Q+H  +I SG L  H  + L+ AY         R++FD + +    L+N++++ Y + G 
Sbjct: 23  QVHGSLIVSG-LKPH--NQLINAYSLFQRQDLSRVIFDSVRDPGVVLWNSMIRGYTRAGL 79

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             ++L  F  M      +PD Y++   +KAC      K G+ +H  +   G + D ++G 
Sbjct: 80  HREALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDVYIGT 139

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            L+ MY    ++ +AR+VFD M    VV+WNT++SG  +N  +  AL++F  M    V+ 
Sbjct: 140 ALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDMRSCCVDI 199

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D  S+ +++PA   L++ ++ R +H LV   + G   A  + L+DMY  C  +  A  VF
Sbjct: 200 DHVSLYNLIPAVSKLEKSDVCRCLHGLVI--KKGFIFAFSSGLIDMYCNCADLYAAESVF 257

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
           + +  +D  +W +M+  YA NG     L LF LM+   VR N +   S L A + +  L 
Sbjct: 258 EEVWRKDESSWGTMMAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAAYVGDLV 317

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
           +G ++H + ++Q L  +V V T+L+ MY+KC  ++++ Q+F     +  V W+A++A   
Sbjct: 318 KGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYE 377

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
             G   +A+ LFR M+   ++PN  TL S+L   A +A  +   +IHCY I+    S +E
Sbjct: 378 QAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELE 437

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
            +T +I +Y+KCG    A K F  +PIKD   V ++ +  GY   G    A  ++K M  
Sbjct: 438 TATAVISMYAKCGRFSPALKAFERLPIKDA--VAFNALAQGYTQIGDANKAFDVYKNMKL 495

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
            GV P+  T    L  C+       G  ++  +++ H   S       ++++  +   L 
Sbjct: 496 HGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQIIK-HGFDSECHVAHALINMFTKCDALA 554

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
            A  L      + +   W  ++   ++HG  E
Sbjct: 555 AAIVLFDKCGFEKSTVSWNIMMNGYLLHGQAE 586



 Score =  251 bits (642), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 175/610 (28%), Positives = 303/610 (49%), Gaps = 15/610 (2%)

Query: 47  THLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLR 103
            ++ ++LV  Y    ++   R +FD+M  +    +NT++   AQNG S  +L +F  M R
Sbjct: 135 VYIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDM-R 193

Query: 104 LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163
               + D+ +   +I A + L    +   LHG V+  GF      G  LI MY N  ++ 
Sbjct: 194 SCCVDIDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGFIFAFSSG--LIDMYCNCADLY 251

Query: 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223
           AA  VF+ +W     SW T+++ Y  N + +E L +FD M    V  +  +  S L A  
Sbjct: 252 AAESVFEEVWRKDESSWGTMMAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAA 311

Query: 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
           Y+ ++  G  IH+      L  +++   +L+ MY KCG +  A  +F  + +RDVV+W++
Sbjct: 312 YVGDLVKGIAIHDYAVQQGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSA 371

Query: 284 MINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN 343
           MI  Y   G    A+ LF+ M    ++PN++T+ S+L  C+ +   + G+S+H + IK +
Sbjct: 372 MIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKAD 431

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
           +E E+   TA+I MYAKC     + + F R   K  V +NA+  G    G A KA ++++
Sbjct: 432 IESELETATAVISMYAKCGRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANKAFDVYK 491

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
            M +  V P+  T+  +L   A  +D  +   ++  +I++GF S   V+  LI++++KC 
Sbjct: 492 NMKLHGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQIIKHGFDSECHVAHALINMFTKCD 551

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
           +L +A  +F +    +K  V W++++ GY +HG  E AV+ F++M     QPN VTF + 
Sbjct: 552 ALAAAIVLFDKCGF-EKSTVSWNIMMNGYLLHGQAEEAVATFRQMKVEKFQPNAVTFVNI 610

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           + A +    L  G+ + + +++    CS+      +VD+  + G ++ +      +  K 
Sbjct: 611 VRAAAELSALRVGMSVHSSLIQC-GFCSQTPVGNSLVDMYAKCGMIESSEKCFIEISNKY 669

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPE--NPGNYVLLSKLYSAVRRWKDAENV 641
               W  +L A   HG   L   A      ++     P +   LS L SA R     E  
Sbjct: 670 I-VSWNTMLSAYAAHG---LASCAVSLFLSMQENELKPDSVSFLSVL-SACRHAGLVEEG 724

Query: 642 RDVMDEKGLR 651
           + + +E G R
Sbjct: 725 KRIFEEMGER 734


>gi|297813827|ref|XP_002874797.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297320634|gb|EFH51056.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 748

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 196/617 (31%), Positives = 326/617 (52%), Gaps = 7/617 (1%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           +L   +G + + R +FDEM +R    +  ++  Y++ G   ++  +   M R     P  
Sbjct: 89  NLYAKFGLLGHARKVFDEMRDRDVVHWTAMIGCYSRAGIFGEACSLVKEM-RFQGIKPSP 147

Query: 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            T+  ++   +++   +    LH   L+ GF+ D  V N ++ +Y     V  A+++FD 
Sbjct: 148 VTFLEMLSGISEITQLQ---CLHAFALVYGFECDIAVMNSMLNLYCKCDRVGDAKELFDQ 204

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M +  +VSWNT+ISG+   A   E L +   M   G+ PD  +  + L   G + ++EMG
Sbjct: 205 MEQRDMVSWNTMISGFAFVANMSEILKLLYRMRDDGLRPDQQTFGASLSVSGTMCDLEMG 264

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           RM+H  + G     ++    AL+ MY+KCG    +  V + + ++DVV WT MI+G    
Sbjct: 265 RMLHCQIVGTGFDGDMHLRTALITMYLKCGEEEASYRVLETIPDKDVVCWTVMISGLMRL 324

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G    AL +F  M   G   +S  I S++++C+ L     G S+H + ++Q    +    
Sbjct: 325 GRAEKALIVFSEMLHSGSDLSSEAIASVVASCAQLGSFDLGASVHGYVLRQGYTLDTPAL 384

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
            + I MYAKC  +  S  +F R +++  V WNAI++G   +G   KA+ LF +M  + V+
Sbjct: 385 NSFITMYAKCGHLDKSLILFERMNERDLVSWNAIISGHAQHGDLCKALLLFEEMKFKTVQ 444

Query: 412 PNDA-TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
             D+ T+ SLL A +    L     IHC +IR        V T L+D+YSKCG LE+A +
Sbjct: 445 QVDSLTVVSLLQACSSAGALPVGRMIHCIVIRSFIRPCTLVDTALVDMYSKCGYLEAAQR 504

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
            F+ I    KD+V W  +IAGYG HG G+ A+ ++ E +  G++PN V F + L +CSH 
Sbjct: 505 CFNSITW--KDVVSWGTLIAGYGFHGKGDIALEIYSEFLHFGMKPNHVIFLAVLSSCSHN 562

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           G++ +GL +F+ M+ +       +H  C+VDLL RA R+++A+   +    +P+  V G 
Sbjct: 563 GMVQQGLKIFSSMVRDFGVEPNHEHLACVVDLLCRAKRVEDAFKFYKENFTRPSIDVLGI 622

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           +L A   +G  E+ ++  + + EL+P + G+YV L   ++A++RW D     + M   GL
Sbjct: 623 ILDASHANGKTEVEDIICRDMIELKPVDAGHYVRLGHSFAAMKRWDDVSESWNQMRSLGL 682

Query: 651 RKAPAHSLIEVRNILTA 667
           +K P  S IE+    T 
Sbjct: 683 KKLPGWSKIEINGKTTT 699



 Score =  254 bits (650), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 165/558 (29%), Positives = 287/558 (51%), Gaps = 18/558 (3%)

Query: 70  MSERSSFL-----YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL 124
           M  RSS L     +N+ +   + +G     L  F  ML   +  PD +T+P ++KACT L
Sbjct: 1   MIRRSSVLNSTKYFNSHINHLSSHGDHKQVLSTFSSMLA-NKLLPDTFTFPSLLKACTSL 59

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
                G+++H +VL+ GF  D+++ + L+ +Y  FG +  ARKVFD M +  VV W  +I
Sbjct: 60  QLLSFGLSIHQKVLVNGFSSDSYISSSLVNLYAKFGLLGHARKVFDEMRDRDVVHWTAMI 119

Query: 185 SGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244
             Y +     EA  +   M   G++P   S V+ L     + EI   + +H         
Sbjct: 120 GCYSRAGIFGEACSLVKEMRFQGIKP---SPVTFLEMLSGISEITQLQCLHAFALVYGFE 176

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
            +IA  N+++++Y KC  V +A+ +FD+M +RD+V+W +MI+G+A   ++   L L   M
Sbjct: 177 CDIAVMNSMLNLYCKCDRVGDAKELFDQMEQRDMVSWNTMISGFAFVANMSEILKLLYRM 236

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
           + +G+RP+  T G+ LS   ++  L+ GR LH   +    + ++ + TALI MY KC   
Sbjct: 237 RDDGLRPDQQTFGASLSVSGTMCDLEMGRMLHCQIVGTGFDGDMHLRTALITMYLKCGEE 296

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
           + S++V      K  V W  +++G +  G A KA+ +F +ML    + +   + S++ + 
Sbjct: 297 EASYRVLETIPDKDVVCWTVMISGLMRLGRAEKALIVFSEMLHSGSDLSSEAIASVVASC 356

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           A L       ++H Y++R G+          I +Y+KCG L+ +  +F    + ++D+V 
Sbjct: 357 AQLGSFDLGASVHGYVLRQGYTLDTPALNSFITMYAKCGHLDKSLILFER--MNERDLVS 414

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQP-NEVTFTSALHACSHGGLLDEGLDLFNFM 543
           W+ II+G+  HG    A+ LF+EM    VQ  + +T  S L ACS  G L  G  +   +
Sbjct: 415 WNAIISGHAQHGDLCKALLLFEEMKFKTVQQVDSLTVVSLLQACSSAGALPVGRMIHCIV 474

Query: 544 LENH-QTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           + +  + C+  D  T +VD+  + G L+ A     ++  K     WG L+     HG  +
Sbjct: 475 IRSFIRPCTLVD--TALVDMYSKCGYLEAAQRCFNSITWKDV-VSWGTLIAGYGFHGKGD 531

Query: 603 LG-EVAAKWL-FELEPEN 618
           +  E+ +++L F ++P +
Sbjct: 532 IALEIYSEFLHFGMKPNH 549


>gi|449484874|ref|XP_004157004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Cucumis sativus]
          Length = 881

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 210/673 (31%), Positives = 351/673 (52%), Gaps = 51/673 (7%)

Query: 27  KSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVS----NVRILFDEMSERSSFLYNTV 81
           K + G K +H+F++ SG    T + ++L+  Y        +    F+ +  +    +NT+
Sbjct: 161 KGVVG-KSIHSFVMKSGLDRDTLVGNALISMYAKSGQPWYDAYAAFNSIIHKDVVTWNTI 219

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR---KLGIALHGRV- 137
           +   A+     D+L++F  ML      P+  T   ++  C         + G  +HG + 
Sbjct: 220 ISALAEKNLMFDALQLFSLMLE-EPIEPNYITIACILPVCASFGNNVSCRFGKEIHGYIH 278

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
             T    D  V N L+ +Y+  G+++ A  +F  + +  +VSWNTLISGY  N    EA+
Sbjct: 279 RRTELIEDISVCNALMNLYLRVGQMEEAEILFSHLKQRDLVSWNTLISGYSLNDKWLEAV 338

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDM 256
             F  +L  G +PD  +++SVLPAC Y + + +G+MIH  ++    L ++    NALV  
Sbjct: 339 DHFCKLLCLGSDPDSVTLISVLPACAYSQNLRIGKMIHGYILRHPILSEDSTVGNALVSF 398

Query: 257 YVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           Y KC  V  A   F  +S +D+++W S++N +A  G+    L L  LM  E  +P+  TI
Sbjct: 399 YTKCNDVKSAFHSFSLISSKDLISWNSVLNAFAEFGNTTQFLRLLHLMLRERFKPDHFTI 458

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNL---ECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            S+++ C ++    + + +H ++++  L   +    +  AL+D Y+KC ++  + ++F  
Sbjct: 459 LSIINFCITVLGGCKVKEVHCYSVRACLFEADYGPTILNALLDAYSKCGIIDYALKIFES 518

Query: 374 TSKKKTV--------------------------------PWNAILAGCVHNGLARKAVEL 401
           +S K+ +                                 WN ++     N   R A+ L
Sbjct: 519 SSGKRNLVTCNSMISCYVNCKSPNDALTIFSGMSETDLTTWNLMIRVYAENNCPRDALGL 578

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
           FR++ ++ ++P+  ++ SLLP    LA  +     H Y  R  F  V  +   L+D Y+K
Sbjct: 579 FRRLQIKGMKPDAVSIMSLLPVCNELASFRLLKECHGYSFRSRFEDVY-LDGALLDAYAK 637

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
           CG+++ A+K+F       KD+V+++ +I+GY +HG GE A+ +F  M++SGV+P+ V  T
Sbjct: 638 CGAVDCAYKLFES--SSQKDLVMFTSMISGYAIHGMGEEALKVFTNMLESGVKPDHVVVT 695

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581
           S L ACSH GL+D+GL++F+ M E        +HY C+VDLL R GR+ +AY  +  MP+
Sbjct: 696 SILSACSHTGLVDQGLNIFHSMEEVIHIKPTMEHYACVVDLLARGGRIKDAYSFVIGMPI 755

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENV 641
           +P   +WG LLGAC  H  VELG V A+ LFE + ++ GNYV++S LY+A  +W D    
Sbjct: 756 QPDANIWGTLLGACKTHHEVELGLVVAEKLFETKADDIGNYVVMSNLYAADAKW-DGVLE 814

Query: 642 RDVMDEKGLRKAP 654
           R +      RK P
Sbjct: 815 RSIDITNAARKVP 827



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 174/670 (25%), Positives = 311/670 (46%), Gaps = 63/670 (9%)

Query: 13  THLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAY---GHVSNVRILFD 68
            H+   + +  AA  +I   K L  + +  G +    +   L+  Y   G       LF+
Sbjct: 43  NHIFAAIFKSCAALFAINVGKALQGYAVKQGEIVCQSVYKGLLNLYARCGAFDECWKLFE 102

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDS--LKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           +++ R    +N ++  Y ++   HD+  +++F+ M   GE  P   T   ++  C+ +  
Sbjct: 103 QLNRRDVVTWNIILSGYCRSQI-HDTKAIRLFVKMHAEGEVKPSAITIASILPVCSRVGK 161

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEV-KAARKVFDAMWEHSVVSWNTLIS 185
             +G ++H  V+ +G D DT VGN LI+MY   G+    A   F+++    VV+WNT+IS
Sbjct: 162 GVVGKSIHSFVMKSGLDRDTLVGNALISMYAKSGQPWYDAYAAFNSIIHKDVVTWNTIIS 221

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC---GYLKEIEMGRMIHELV-AGG 241
              +     +AL +F  ML+  +EP+  ++  +LP C   G       G+ IH  +    
Sbjct: 222 ALAEKNLMFDALQLFSLMLEEPIEPNYITIACILPVCASFGNNVSCRFGKEIHGYIHRRT 281

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
            L ++I+  NAL+++Y++ G + EA ++F  + +RD+V+W ++I+GY+LN     A+  F
Sbjct: 282 ELIEDISVCNALMNLYLRVGQMEEAEILFSHLKQRDLVSWNTLISGYSLNDKWLEAVDHF 341

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE-VIVETALIDMYAK 360
             +   G  P+S+T+ S+L AC+    L+ G+ +H + ++  +  E   V  AL+  Y K
Sbjct: 342 CKLLCLGSDPDSVTLISVLPACAYSQNLRIGKMIHGYILRHPILSEDSTVGNALVSFYTK 401

Query: 361 CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
           CN VK +F  F+  S K  + WN++L      G   + + L   ML E  +P+  T+ S+
Sbjct: 402 CNDVKSAFHSFSLISSKDLISWNSVLNAFAEFGNTTQFLRLLHLMLRERFKPDHFTILSI 461

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSV---VEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +     +    +   +HCY +R           +   L+D YSKCG ++ A KIF     
Sbjct: 462 INFCITVLGGCKVKEVHCYSVRACLFEADYGPTILNALLDAYSKCGIIDYALKIFESSSG 521

Query: 478 K------------------------------DKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
           K                              + D+  W+++I  Y  +     A+ LF+ 
Sbjct: 522 KRNLVTCNSMISCYVNCKSPNDALTIFSGMSETDLTTWNLMIRVYAENNCPRDALGLFRR 581

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA---DHYT--CIVDL 562
           +   G++P+ V+  S L  C+        L  F  + E H    R+   D Y    ++D 
Sbjct: 582 LQIKGMKPDAVSIMSLLPVCNE-------LASFRLLKECHGYSFRSRFEDVYLDGALLDA 634

Query: 563 LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE-LEPENPGN 621
             + G +D AY L  +   K    ++ +++    IHG   +GE A K     LE     +
Sbjct: 635 YAKCGAVDCAYKLFESSSQKDL-VMFTSMISGYAIHG---MGEEALKVFTNMLESGVKPD 690

Query: 622 YVLLSKLYSA 631
           +V+++ + SA
Sbjct: 691 HVVVTSILSA 700



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 144/601 (23%), Positives = 282/601 (46%), Gaps = 48/601 (7%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLR--SSLVRAY---GHVSNVRIL 66
           T   ++ +   +    S    K++H +I     L   +   ++L+  Y   G +    IL
Sbjct: 250 TIACILPVCASFGNNVSCRFGKEIHGYIHRRTELIEDISVCNALMNLYLRVGQMEEAEIL 309

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           F  + +R    +NT++  Y+ N    +++  F  +L LG  +PD+ T   V+ AC     
Sbjct: 310 FSHLKQRDLVSWNTLISGYSLNDKWLEAVDHFCKLLCLGS-DPDSVTLISVLPACAYSQN 368

Query: 127 RKLGIALHGRVLITG-FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
            ++G  +HG +L       D+ VGN L++ Y    +VK+A   F  +    ++SWN++++
Sbjct: 369 LRIGKMIHGYILRHPILSEDSTVGNALVSFYTKCNDVKSAFHSFSLISSKDLISWNSVLN 428

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC------------------GYLKE 227
            + +     + L +   ML+   +PD  +++S++  C                    L E
Sbjct: 429 AFAEFGNTTQFLRLLHLMLRERFKPDHFTILSIINFCITVLGGCKVKEVHCYSVRACLFE 488

Query: 228 IEMGRMIHE--LVAGGRLG---------------KNIAAWNALVDMYVKCGSVNEARLVF 270
            + G  I    L A  + G               +N+   N+++  YV C S N+A  +F
Sbjct: 489 ADYGPTILNALLDAYSKCGIIDYALKIFESSSGKRNLVTCNSMISCYVNCKSPNDALTIF 548

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
             MSE D+ TW  MI  YA N   R+ALGLF+ +Q +G++P++++I SLL  C+ L   +
Sbjct: 549 SGMSETDLTTWNLMIRVYAENNCPRDALGLFRRLQIKGMKPDAVSIMSLLPVCNELASFR 608

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
             +  H ++ +   E +V ++ AL+D YAKC  V  ++++F  +S+K  V + ++++G  
Sbjct: 609 LLKECHGYSFRSRFE-DVYLDGALLDAYAKCGAVDCAYKLFESSSQKDLVMFTSMISGYA 667

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI-HCYLIRYGFLSVV 449
            +G+  +A+++F  ML   V+P+   + S+L A +    + Q +NI H           +
Sbjct: 668 IHGMGEEALKVFTNMLESGVKPDHVVVTSILSACSHTGLVDQGLNIFHSMEEVIHIKPTM 727

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
           E    ++D+ ++ G ++ A+     +PI+  D  +W  ++     H   E  + + +++ 
Sbjct: 728 EHYACVVDLLARGGRIKDAYSFVIGMPIQ-PDANIWGTLLGACKTHHEVELGLVVAEKLF 786

Query: 510 QSGVQP--NEVTFTSALHACSH-GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
           ++      N V  ++   A +   G+L+  +D+ N   +      + D    ++D  G  
Sbjct: 787 ETKADDIGNYVVMSNLYAADAKWDGVLERSIDITNAARKVPLDKKKLDDDATLIDTQGVG 846

Query: 567 G 567
           G
Sbjct: 847 G 847



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 125/459 (27%), Positives = 230/459 (50%), Gaps = 11/459 (2%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGE-YNPDNYTYPIVIKACTDLAWRKLGIALHGR 136
           +++ ++    N    + L +F+   +    + PDN+ +  + K+C  L    +G AL G 
Sbjct: 9   WSSTIRNLCLNAKHQEVLSVFVHKFQCSSGFKPDNHIFAAIFKSCAALFAINVGKALQGY 68

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA-YAKE 195
            +  G  +   V   L+ +Y   G      K+F+ +    VV+WN ++SGY ++  +  +
Sbjct: 69  AVKQGEIVCQSVYKGLLNLYARCGAFDECWKLFEQLNRRDVVTWNIILSGYCRSQIHDTK 128

Query: 196 ALVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           A+ +F  M   G V+P   ++ S+LP C  + +  +G+ IH  V    L ++    NAL+
Sbjct: 129 AIRLFVKMHAEGEVKPSAITIASILPVCSRVGKGVVGKSIHSFVMKSGLDRDTLVGNALI 188

Query: 255 DMYVKCGSV-NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
            MY K G    +A   F+ +  +DVVTW ++I+  A    + +AL LF LM  E + PN 
Sbjct: 189 SMYAKSGQPWYDAYAAFNSIIHKDVVTWNTIISALAEKNLMFDALQLFSLMLEEPIEPNY 248

Query: 314 LTIGSLLSACSSL---YYLKRGRSLHAWTIKQNLECEVI-VETALIDMYAKCNLVKLSFQ 369
           +TI  +L  C+S       + G+ +H +  ++    E I V  AL+++Y +   ++ +  
Sbjct: 249 ITIACILPVCASFGNNVSCRFGKEIHGYIHRRTELIEDISVCNALMNLYLRVGQMEEAEI 308

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           +F+   ++  V WN +++G   N    +AV+ F ++L    +P+  TL S+LPA A   +
Sbjct: 309 LFSHLKQRDLVSWNTLISGYSLNDKWLEAVDHFCKLLCLGSDPDSVTLISVLPACAYSQN 368

Query: 430 LQQAMNIHCYLIRYGFLSV-VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
           L+    IH Y++R+  LS    V   L+  Y+KC  ++SA   FS   I  KD++ W+ +
Sbjct: 369 LRIGKMIHGYILRHPILSEDSTVGNALVSFYTKCNDVKSAFHSFS--LISSKDLISWNSV 426

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           +  +   G+    + L   M++   +P+  T  S ++ C
Sbjct: 427 LNAFAEFGNTTQFLRLLHLMLRERFKPDHFTILSIINFC 465



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 131/261 (50%), Gaps = 9/261 (3%)

Query: 277 DVVTWTSMINGYALNGDVRNALGLF--QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
           D  +W+S I    LN   +  L +F  +     G +P++    ++  +C++L+ +  G++
Sbjct: 5   DFTSWSSTIRNLCLNAKHQEVLSVFVHKFQCSSGFKPDNHIFAAIFKSCAALFAINVGKA 64

Query: 335 LHAWTIKQ-NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG-CVHN 392
           L  + +KQ  + C+ + +  L+++YA+C      +++F + +++  V WN IL+G C   
Sbjct: 65  LQGYAVKQGEIVCQSVYK-GLLNLYARCGAFDECWKLFEQLNRRDVVTWNIILSGYCRSQ 123

Query: 393 GLARKAVELFRQMLVE-VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEV 451
               KA+ LF +M  E  V+P+  T+ S+LP  + +       +IH ++++ G      V
Sbjct: 124 IHDTKAIRLFVKMHAEGEVKPSAITIASILPVCSRVGKGVVGKSIHSFVMKSGLDRDTLV 183

Query: 452 STGLIDIYSKCGS-LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
              LI +Y+K G     A+  F+ I    KD+V W+ II+          A+ LF  M++
Sbjct: 184 GNALISMYAKSGQPWYDAYAAFNSII--HKDVVTWNTIISALAEKNLMFDALQLFSLMLE 241

Query: 511 SGVQPNEVTFTSALHACSHGG 531
             ++PN +T    L  C+  G
Sbjct: 242 EPIEPNYITIACILPVCASFG 262


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 199/607 (32%), Positives = 311/607 (51%), Gaps = 4/607 (0%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V +   LFD M E  +  +N ++ MY+  G       +F  M   G   PD  T   +
Sbjct: 194 GRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHG-LRPDATTLCSL 252

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +  C        G  +H   L +  D    V N L+ MY   G++  A  +F  M    +
Sbjct: 253 MSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDL 312

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           +SWNT+IS Y +N  + +AL     +  +   P+  +  S L AC     +  G+M+H +
Sbjct: 313 ISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAI 372

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V    L +N+   N+L+ MY KC S+ +A  VF  M   D+V++  +I GYA+  D   A
Sbjct: 373 VLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKA 432

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKR-GRSLHAWTIKQNLECEVIVETALID 356
           + +F  M+  G++PN +T+ ++  + +S   L   GR LHA+ I+     +  V  +LI 
Sbjct: 433 MQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYIIRTGFLSDEYVANSLIT 492

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MYAKC  ++ S  +F   + K  V WNAI+A  V  G   +A++LF  M     + +   
Sbjct: 493 MYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVC 552

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           L   L + A LA L++ M +H   ++ G  S   V    +D+Y KCG ++   ++  +  
Sbjct: 553 LAECLSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQA 612

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           I+ +    W+ +I+GY  +G+ + A   FK+MV +G +P+ VTF + L ACSH GL+D+G
Sbjct: 613 IRPQQ--CWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKG 670

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
           +D +N M  +        H  CIVDLLGR GR  EA   I  MP+ P   +W +LL +  
Sbjct: 671 IDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSSR 730

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
            H N+E+G   AK L EL+P +   YVLLS LY+   RW D + +R  M    + K PA 
Sbjct: 731 THKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYATNARWADVDKLRSHMKTININKRPAC 790

Query: 657 SLIEVRN 663
           S ++++N
Sbjct: 791 SWLKLKN 797



 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 184/623 (29%), Positives = 306/623 (49%), Gaps = 16/623 (2%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAYGH---VSNVRILFDEMS 71
           ++   ++    + IA    +HA    +G +   ++ ++L+  YG    VS+ + LF EM 
Sbjct: 47  LVTACERRGRDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMP 106

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
           ER+   +  +M   + NG   ++L+ +  M R G     N  +  V+  C  L     G+
Sbjct: 107 ERNVVSWTALMVALSSNGYLEEALRAYRQMRRDGVPCNAN-AFATVVSLCGSLENEVPGL 165

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +  +V+++G      V N LI M+ N G V  A K+FD M EH  +SWN +IS Y    
Sbjct: 166 QVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQG 225

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
              +  +VF  M   G+ PD  ++ S++  C        G  IH L     L  ++   N
Sbjct: 226 ICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVIN 285

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           ALV+MY   G +++A  +F  MS RD+++W +MI+ Y  N +  +AL     +      P
Sbjct: 286 ALVNMYSAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESP 345

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           N LT  S L ACSS   L  G+ +HA  ++ +L+  ++V  +LI MY KCN ++ + +VF
Sbjct: 346 NHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVF 405

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
                   V +N ++ G        KA+++F  M    ++PN  T+ ++  ++A   DL 
Sbjct: 406 QSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLH 465

Query: 432 Q-AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
                +H Y+IR GFLS   V+  LI +Y+KCG+LES+  IF+   I +K+IV W+ IIA
Sbjct: 466 NYGRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNS--ITNKNIVSWNAIIA 523

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
                GHGE A+ LF +M  +G + + V     L +C+    L+EG+ L    +   ++ 
Sbjct: 524 ANVQLGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCASLASLEEGMQLHGLGM---KSG 580

Query: 551 SRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAA 608
             +D Y     +D+ G+ G++DE   ++    ++P    W  L+     +G  +  E   
Sbjct: 581 LDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQQ-CWNTLISGYAKYGYFKEAEETF 639

Query: 609 KWLFELEPENPGNYVLLSKLYSA 631
           K +  +      +YV    L SA
Sbjct: 640 KQM--VATGRKPDYVTFVALLSA 660



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 144/555 (25%), Positives = 261/555 (47%), Gaps = 22/555 (3%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK- 128
           M++R+   + T +    + G    + +M  GM   G      +    ++ AC      + 
Sbjct: 1   MADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERG-VPLSGFALASLVTACERRGRDEG 59

Query: 129 --LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
              G A+H      G   + ++G  L+ +Y + G V  A+++F  M E +VVSW  L+  
Sbjct: 60  IACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVA 119

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
              N Y +EAL  +  M + GV  +  +  +V+  CG L+    G  +   V    L   
Sbjct: 120 LSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQ 179

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           ++  N+L+ M+   G V++A  +FDRM E D ++W +MI+ Y+  G       +F  M+ 
Sbjct: 180 VSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRH 239

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
            G+RP++ T+ SL+S C+S  +   G  +H+  ++ +L+  V V  AL++MY+    +  
Sbjct: 240 HGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGKLSD 299

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           +  +F   S++  + WN +++  V N  +  A++   Q+      PN  T +S L A + 
Sbjct: 300 AEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSS 359

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
              L     +H  +++      + V   LI +Y KC S+E A K+F  +P    DIV ++
Sbjct: 360 PGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPT--HDIVSYN 417

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
           V+I GY +   G  A+ +F  M  +G++PN +T  +      HG       DL N+    
Sbjct: 418 VLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINI-----HGSFASSN-DLHNYGRPL 471

Query: 547 HQTCSR----ADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           H    R    +D Y    ++ +  + G L+ + ++  ++  K     W A++ A V  G+
Sbjct: 472 HAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNI-VSWNAIIAANVQLGH 530

Query: 601 VELGEVAAKWLFELE 615
              GE A K   +++
Sbjct: 531 ---GEEALKLFIDMQ 542


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 201/547 (36%), Positives = 302/547 (55%), Gaps = 12/547 (2%)

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           I IK+ TD+        +    L  GF     +GN LI  Y+  G V  ARKVFD +   
Sbjct: 88  IGIKSITDIT------KIQSHALKRGFHHS--LGNKLIDAYLKCGSVVYARKVFDEVPHR 139

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
            +V+WN++I+ Y +N  +KEA+ ++  M+  G+ PD  +  SV  A   L  +  G+  H
Sbjct: 140 HIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAH 199

Query: 236 -ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
            + V  G    N+   +ALVDMY K G + +ARLV D++  +DVV +T++I GY+ +G+ 
Sbjct: 200 GQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGED 259

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             +L +F+ M  +G+  N  T+ S+L  C +L  L  GR +H   +K  LE  V  +T+L
Sbjct: 260 GESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSL 319

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           + MY +C LV  S +VF +      V W +++ G V NG    A+  FRQML   + PN 
Sbjct: 320 LTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNS 379

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
            TL+S+L A + LA L+Q   IH  ++++G      V   LID Y KCGS E A  +F+ 
Sbjct: 380 FTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFN- 438

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
             + + D+V  + +I  Y  +G G  A+ LF  M  +G++PN VT+   L AC++ GLL+
Sbjct: 439 -GLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLE 497

Query: 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           EG  +F+    +       DHY C+VDLLGRAGRL EA  LI  + +     +W  LL A
Sbjct: 498 EGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNISDV-VIWRTLLSA 556

Query: 595 CVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP 654
           C IHG+VE+ +     + +L PE+ G +VLLS LY++   W     ++  M E  L+K P
Sbjct: 557 CRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNP 616

Query: 655 AHSLIEV 661
           A S ++V
Sbjct: 617 AMSWVDV 623



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 157/505 (31%), Positives = 264/505 (52%), Gaps = 11/505 (2%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAY---GHVSNVRIL 66
           ++T L   L+QQ    KSI    ++ +  +  G  F H L + L+ AY   G V   R +
Sbjct: 75  QSTKLYSSLIQQCIGIKSITDITKIQSHALKRG--FHHSLGNKLIDAYLKCGSVVYARKV 132

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           FDE+  R    +N+++  Y +NG S +++ ++  M+  G   PD +T+  V KA +DL  
Sbjct: 133 FDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGIL-PDEFTFSSVFKAFSDLGL 191

Query: 127 RKLGIALHGRVLITGFDM-DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
              G   HG+ ++ G  + + FVG+ L+ MY  FG+++ AR V D +    VV +  LI 
Sbjct: 192 VHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIV 251

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY  +    E+L VF  M K G+E +  ++ SVL  CG L+++  GR+IH L+    L  
Sbjct: 252 GYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLES 311

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
            +A+  +L+ MY +CG V+++  VF +    + VTWTS+I G   NG    AL  F+ M 
Sbjct: 312 AVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQML 371

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
              + PNS T+ S+L ACSSL  L++G+ +HA  +K  L+ +  V  ALID Y KC   +
Sbjct: 372 RSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTE 431

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
           ++  VF    +   V  N+++     NG   +A++LF  M    +EPN+ T   +L A  
Sbjct: 432 IARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACN 491

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTG-LIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
               L++  +I       G + + +     ++D+  + G L+ A  + +++ I   D+V+
Sbjct: 492 NAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNI--SDVVI 549

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMV 509
           W  +++   +HG  E A  +   ++
Sbjct: 550 WRTLLSACRIHGDVEMAKRVMNRVI 574


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 196/585 (33%), Positives = 307/585 (52%), Gaps = 36/585 (6%)

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
           +P + T   +I  C  L   K    +H ++++ G          L++  +   +++ A K
Sbjct: 33  SPTHQTLHYLIDQCISLKQLK---HVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHK 89

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +FD + + +   +N LI GY  ++   ++L+++  M+  G+ P+  ++  VL AC     
Sbjct: 90  LFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSC 149

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
             +G  +H       +G +    NA++++YV CG +  AR VFD +SER +V+W SMING
Sbjct: 150 YWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMING 209

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y+  G    A+ +F+ MQ  G+ P+  T+  LLS  +       GR +H   +   +E +
Sbjct: 210 YSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEID 269

Query: 348 VIVETALIDMYAKCN-------------------------------LVKLSFQVFARTSK 376
            IV  AL+DMYAKC                                L+  + + F +   
Sbjct: 270 SIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPG 329

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           K  V WN+I+   V  GL  +AV+LF +M    V  ND TL ++L + + + DL      
Sbjct: 330 KNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQA 389

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H Y+          +   +ID+Y+KCG+L++A  +F  +P  +K+ V W+VII    +HG
Sbjct: 390 HSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMP--EKNAVSWNVIIGALALHG 447

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
           +G+ A+ +F++M  SGV P+E+TFT  L ACSH GL+D G   F  M          +HY
Sbjct: 448 YGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHY 507

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
            C+VDLLGR G L EA  LI+ MP+KP   VW ALLGAC  +GN+ +G+   K L EL  
Sbjct: 508 ACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELGR 567

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            N G YVLLS +YS  +RW D +N+  ++D+ G++K  A S IE+
Sbjct: 568 YNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGIKKCRAISFIEI 612



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 164/555 (29%), Positives = 277/555 (49%), Gaps = 62/555 (11%)

Query: 1   MNGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRS--SLVRAYG 58
           +  P+H TL       I L Q           K +HA II  G L T + +   LV +  
Sbjct: 31  LKSPTHQTLHYLIDQCISLKQ----------LKHVHAQIILHG-LATQVLTLGKLVSSSV 79

Query: 59  HVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
            + ++R    LFD++ + + F++N ++K Y+ +     SL ++  M+  G   P+ +T P
Sbjct: 80  QLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGIL-PNQFTIP 138

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
            V+KAC   +   LG+ +H +    G      V N ++ +Y+  G + +AR+VFD + E 
Sbjct: 139 FVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISER 198

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
           ++VSWN++I+GY K   ++EA+++F  M + G+EPD  ++V +L         ++GR +H
Sbjct: 199 TLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVH 258

Query: 236 -ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
             +V  G    +I   NAL+DMY KCG++  A+ VFD+M ++DVV+WT MIN YA +G +
Sbjct: 259 LHMVVTGIEIDSIVT-NALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLI 317

Query: 295 RNAL-------------------------------GLFQLMQFEGVRPNSLTIGSLLSAC 323
             AL                                LF  M   GV  N  T+ ++LS+C
Sbjct: 318 DCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSC 377

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
           S +  L  G+  H++    N+     +  A+IDMYAKC  ++ +  VF    +K  V WN
Sbjct: 378 SHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWN 437

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--YAILADLQQ----AMNIH 437
            I+     +G  ++A+E+F +M    V P++ T   LL A  ++ L D  Q     MN  
Sbjct: 438 VIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHYFEIMN-- 495

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
              + +G    VE    ++D+  + G L  A  +  ++P+K  D+VVWS ++     +G+
Sbjct: 496 ---LTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVK-PDVVVWSALLGACRTYGN 551

Query: 498 GETAVSLFKEMVQSG 512
                 + K++++ G
Sbjct: 552 LAIGKQIMKQLLELG 566


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 183/452 (40%), Positives = 272/452 (60%), Gaps = 3/452 (0%)

Query: 216 VSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE 275
            S+L +C   K +  G+ +H       +  N      LV +Y    S+  AR +FD++ +
Sbjct: 51  TSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPK 110

Query: 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
           +++  W  +I GYA NG   NA+ L+  M   G+RP++ T+  +L ACS+L  +  GRS+
Sbjct: 111 QNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSI 170

Query: 336 HAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLA 395
           H + IK   E ++ V  ALIDMYAKC  V  + +VF +   +  V WN++LA    NG  
Sbjct: 171 HEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHP 230

Query: 396 RKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGL 455
            +++ L R+M    V P +ATL +++ + A +A L     IH +  R+GF S  +V T L
Sbjct: 231 DESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTAL 290

Query: 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP 515
           ID+Y+KCGS++ A  +F  +  ++K +V W+ II GY MHG    A+ LF +M +   +P
Sbjct: 291 IDMYAKCGSVKVALALFERL--REKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RP 347

Query: 516 NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDL 575
           + +TF   L ACS G LLDEG  L+N M+ ++       HYTC++DLLG  G+LDEAYDL
Sbjct: 348 DHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDL 407

Query: 576 IRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRW 635
           IR M +KP   VWGALL +C IHGNVEL E+A + L ELEP++ GNYV+L+ +Y+   +W
Sbjct: 408 IRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKW 467

Query: 636 KDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           +  E +R VM +K ++K  A S IEV+N + A
Sbjct: 468 EGVEKLRQVMIDKRIKKNIACSWIEVKNKVYA 499



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 129/408 (31%), Positives = 214/408 (52%), Gaps = 5/408 (1%)

Query: 111 NYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD 170
           +Y Y  ++++C D      G  LH +    G   +  +   L+ +Y     +  AR +FD
Sbjct: 47  HYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFD 106

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
            + + ++  WN LI GY  N     A++++  ML  G+ PD  ++  VL AC  L  I  
Sbjct: 107 KIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGE 166

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
           GR IHE V      +++    AL+DMY KCG V +A  VFD++  RD V W SM+  YA 
Sbjct: 167 GRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQ 226

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           NG    ++ L + M   GVRP   T+ +++S+ + +  L  GR +H +  +   +    V
Sbjct: 227 NGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKV 286

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
           +TALIDMYAKC  VK++  +F R  +K+ V WNAI+ G   +GLA  A++LF +M  E  
Sbjct: 287 KTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKE-D 345

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAH 469
            P+  T   +L A +    L +   ++  ++R YG    V+  T +ID+   CG L+ A+
Sbjct: 346 RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAY 405

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
            +   + +K  D  VW  ++    +HG+ E A    +++++  ++P++
Sbjct: 406 DLIRNMSVK-PDSGVWGALLNSCKIHGNVELAELALEKLIE--LEPDD 450



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 139/427 (32%), Positives = 226/427 (52%), Gaps = 16/427 (3%)

Query: 10  PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAYG---HVSNVRI 65
           P T +    L+Q    +K++   KQLHA     G  +   L + LV  Y     + N R 
Sbjct: 44  PTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARN 103

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LFD++ +++ FL+N +++ YA NG   +++ ++  ML  G   PDN+T P V+KAC+ L+
Sbjct: 104 LFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYG-LRPDNFTLPFVLKACSALS 162

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
               G ++H  V+ +G++ D FVG  LI MY   G V  A +VFD +     V WN++++
Sbjct: 163 AIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLA 222

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
            Y +N +  E++ +   M  +GV P  A++V+V+ +   +  +  GR IH          
Sbjct: 223 AYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQS 282

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           N     AL+DMY KCGSV  A  +F+R+ E+ VV+W ++I GYA++G    AL LF  M+
Sbjct: 283 NDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMR 342

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ-NLECEVIVETALIDMYAKCNLV 364
            E  RP+ +T   +L+ACS    L  GR+L+   ++   +   V   T +ID+   C  +
Sbjct: 343 KED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQL 401

Query: 365 KLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
             ++ +    S K  +  W A+L  C  +G    A EL  + L+E +EP+D+        
Sbjct: 402 DEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELA-ELALEKLIE-LEPDDSG------N 453

Query: 424 YAILADL 430
           Y ILA++
Sbjct: 454 YVILANM 460


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 211/644 (32%), Positives = 341/644 (52%), Gaps = 26/644 (4%)

Query: 33  KQLHAFIITSGPLFTHLR------SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMK 83
           +QLH   +  G    H R      +SLV  Y   G V     +F+ M +++   + +++ 
Sbjct: 119 EQLHCLCVKCG----HDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLT 174

Query: 84  MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD 143
             A      + + +F  M   G + P+ +T+  V+ A        LG  +H + +  G  
Sbjct: 175 GCAHAQMHSEVMALFFRMRAEGIW-PNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCR 233

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
              FV N L+ MY   G V+ A+ VF+ M    +VSWNTL++G   N    EAL +F   
Sbjct: 234 SSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHES 293

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA--GGRLGKNIAAWNALVDMYVKCG 261
             +  +   ++  +V+  C  LK++ + R +H  V   G  L  N+    AL D Y KCG
Sbjct: 294 RATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNV--MTALADAYSKCG 351

Query: 262 SVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
            + +A  +F   +  R+VV+WT++I+G   NGD+  A+ LF  M+ + V PN  T  ++L
Sbjct: 352 ELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAML 411

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
            A  S+   +    +HA  IK N +    V TAL+  Y+K    + +  +F    +K  V
Sbjct: 412 KASLSILPPQ----IHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVV 467

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL-ADLQQAMNIHCY 439
            W+A+L+     G    A  LF +M ++ ++PN+ T++S++ A A   A + Q    H  
Sbjct: 468 AWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAI 527

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            I+Y +   + VS+ L+ +YS+ G+++SA  +F      D+D+V W+ +I+GY  HG+  
Sbjct: 528 SIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQ--TDRDLVSWNSMISGYAQHGYSM 585

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
            A+  F++M  SG+Q + VTF + +  C+H GL+ EG   F+ M+ +H+     +HY C+
Sbjct: 586 KAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACM 645

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENP 619
           VDL  RAG+LDE   LIR MP      VW  LLGAC +H NVELG+ +A  L  LEP + 
Sbjct: 646 VDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDS 705

Query: 620 GNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
             YVLLS +Y+A  +WK+ + VR +MD + ++K    S I+++N
Sbjct: 706 STYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKN 749



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 148/468 (31%), Positives = 235/468 (50%), Gaps = 10/468 (2%)

Query: 64  RILFDEMSERSSFL-YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
           R   DE+  R + +  N V+  YA+ G   + L  F  + R G    D+ T   V+KAC 
Sbjct: 52  RYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQF-SVARRGGVLVDSATLSCVLKACR 110

Query: 123 DLAWRKLGIALHGRVLITGFDM-DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWN 181
            +  R LG  LH   +  G D  +   G  L+ MYM  G V    +VF+ M + +VV+W 
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 182 TLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG 241
           +L++G        E + +F  M   G+ P+  +  SVL A      +++G+ +H      
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKF 230

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
               ++   N+L++MY KCG V +A+ VF+ M  RD+V+W +++ G  LN     AL LF
Sbjct: 231 GCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLF 290

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
              +    +    T  +++  C++L  L   R LH+  +K        V TAL D Y+KC
Sbjct: 291 HESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKC 350

Query: 362 NLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
             +  +  +F+ T+  +  V W AI++GC+ NG    AV LF +M  + V PN+ T +++
Sbjct: 351 GELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAM 410

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L A   +   Q    IH  +I+  +  +  V T L+  YSK GS E A  IF    I+ K
Sbjct: 411 LKASLSILPPQ----IHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKM--IEQK 464

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
           D+V WS +++ +   G  E A  LF +M   G++PNE T +S + AC+
Sbjct: 465 DVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACA 512



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 163/345 (47%), Gaps = 9/345 (2%)

Query: 266 ARLVFDRMSERDV-VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
           AR   D +  RD  V    ++  YA  G V   L  F + +  GV  +S T+  +L AC 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 325 SLYYLKRGRSLHAWTIKQNLE-CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
           S+     G  LH   +K   +  EV   T+L+DMY KC  V    +VF    KK  V W 
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           ++L GC H  +  + + LF +M  E + PN  T  S+L A A    L     +H   +++
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKF 230

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
           G  S V V   L+++Y+KCG +E A  +F+   ++ +D+V W+ ++AG  ++     A+ 
Sbjct: 231 GCRSSVFVCNSLMNMYAKCGLVEDAKSVFNW--METRDMVSWNTLMAGLQLNECELEALQ 288

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN--HQTCSRADHYTCIVD 561
           LF E   +  +  + T+ + +  C++   L     L + +L++  H T    +  T + D
Sbjct: 289 LFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLT---GNVMTALAD 345

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
              + G L +A ++            W A++  C+ +G++ L  V
Sbjct: 346 AYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVV 390


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  342 bits (876), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 194/494 (39%), Positives = 289/494 (58%), Gaps = 11/494 (2%)

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V SWN++I+   ++  + EAL  F  M K  + P  +S    + AC  L +I  G+  H+
Sbjct: 41  VFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTHQ 100

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
                    +I   +AL+ MY  CG + +AR VFD + +R++V+WTSMI GY LNG+  +
Sbjct: 101 QAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALD 160

Query: 297 ALGLFQLMQFE------GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
           A+ LF+ +  E       +  +S+ + S++SACS +       S+H++ IK+  +  V V
Sbjct: 161 AVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSV 220

Query: 351 ETALIDMYAKCNL--VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
              L+D YAK     V ++ ++F +   K  V +N+I++    +G++ +A ++FR+++ E
Sbjct: 221 GNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKE 280

Query: 409 -VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
            VV  N  TL+++L A +    L+    IH  +IR G    V V T +ID+Y KCG +E+
Sbjct: 281 KVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVET 340

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527
           A   F  +  K+K++  W+ +IAGYGMHGH   A+ LF  M+ SGV+PN +TF S L AC
Sbjct: 341 ARLAFDRM--KNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAAC 398

Query: 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           SH GL D G   FN M          +HY C+VDLLGRAG L +AYDLI+ M ++P   +
Sbjct: 399 SHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSII 458

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           W +LL AC IH NVEL E++   LFEL+P N G Y+LLS +Y+   RWKD E VR  M  
Sbjct: 459 WSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKN 518

Query: 648 KGLRKAPAHSLIEV 661
           +GL K P  SL+E+
Sbjct: 519 RGLVKPPGFSLLEL 532



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 142/456 (31%), Positives = 241/456 (52%), Gaps = 23/456 (5%)

Query: 62  NVRILFDEMSERSS-FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKA 120
           N+  LF+   +++  F +N+V+   A++G S ++L+ F  M +L  Y P   ++P  IKA
Sbjct: 27  NLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLY-PTRSSFPCAIKA 85

Query: 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180
           C+ L     G   H +  + G+  D FV + LI MY   G+++ ARKVFD + + ++VSW
Sbjct: 86  CSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSW 145

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCA------SVVSVLPACGYLKEIEMGRMI 234
            ++I GY  N  A +A+ +F  +L    + D         +VSV+ AC  +    +   I
Sbjct: 146 TSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESI 205

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGS--VNEARLVFDRMSERDVVTWTSMINGYALNG 292
           H  V      + ++  N L+D Y K G   V  AR +FD++ ++D V++ S+++ YA +G
Sbjct: 206 HSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSG 265

Query: 293 DVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
               A  +F +L++ + V  N +T+ ++L A S    L+ G+ +H   I+  LE +VIV 
Sbjct: 266 MSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVG 325

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
           T++IDMY KC  V+ +   F R   K    W A++AG   +G A KA+ELF  M+   V 
Sbjct: 326 TSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVR 385

Query: 412 PNDATLNSLLPA--YAILADLQ----QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
           PN  T  S+L A  +A L D+      AM       R+G    +E    ++D+  + G L
Sbjct: 386 PNYITFVSVLAACSHAGLHDVGWHWFNAMK-----GRFGVEPGLEHYGCMVDLLGRAGFL 440

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           + A+ +  ++ + + D ++WS ++A   +H + E A
Sbjct: 441 QKAYDLIQKMKM-EPDSIIWSSLLAACRIHKNVELA 475



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 174/363 (47%), Gaps = 31/363 (8%)

Query: 269 VFDRMSER-DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           +F+R  ++ DV +W S+I   A +GD   AL  F  M+   + P   +    + ACSSL 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLL 90

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            +  G+  H        + ++ V +ALI MY+ C  ++ + +VF    K+  V W +++ 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLN-------SLLPAYAILADLQQAMNIHCYL 440
           G   NG A  AV LF+ +L+E    +DAT+        S++ A + +A      +IH ++
Sbjct: 151 GYDLNGNALDAVSLFKDLLIE-ENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFV 209

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGS--LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           I+ GF   V V   L+D Y+K G   +  A KIF +I   DKD V ++ I++ Y   G  
Sbjct: 210 IKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIV--DKDRVSYNSIMSVYAQSGMS 267

Query: 499 ETAVSLFKEMVQSGVQP-NEVTFTSALHACSHGGLLDEGL----DLFNFMLENHQTCSRA 553
             A  +F+ +++  V   N +T ++ L A SH G L  G      +    LE+       
Sbjct: 268 NEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVG-- 325

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
              T I+D+  + GR++ A      M  K   + W A++    +HG+      AAK L E
Sbjct: 326 ---TSIIDMYCKCGRVETARLAFDRMKNKNVRS-WTAMIAGYGMHGH------AAKAL-E 374

Query: 614 LEP 616
           L P
Sbjct: 375 LFP 377



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 145/276 (52%), Gaps = 12/276 (4%)

Query: 32  TKQLHAFIITSG-PLFTHLRSSLVRAY-----GHVSNVRILFDEMSERSSFLYNTVMKMY 85
           T+ +H+F+I  G      + ++L+ AY     G V+  R +FD++ ++    YN++M +Y
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVY 261

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
           AQ+G S+++  +F  +++      +  T   V+ A +     ++G  +H +V+  G + D
Sbjct: 262 AQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDD 321

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
             VG  +I MY   G V+ AR  FD M   +V SW  +I+GY  + +A +AL +F  M+ 
Sbjct: 322 VIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMID 381

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA-GGRLG--KNIAAWNALVDMYVKCGS 262
           SGV P+  + VSVL AC +    ++G   H   A  GR G    +  +  +VD+  + G 
Sbjct: 382 SGVRPNYITFVSVLAACSHAGLHDVG--WHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGF 439

Query: 263 VNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNA 297
           + +A  +  +M  E D + W+S++    ++ +V  A
Sbjct: 440 LQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELA 475


>gi|15235810|ref|NP_194836.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|2980759|emb|CAA18186.1| putative protein [Arabidopsis thaliana]
 gi|7270009|emb|CAB79825.1| putative protein [Arabidopsis thaliana]
 gi|332660453|gb|AEE85853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 613

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 198/557 (35%), Positives = 310/557 (55%), Gaps = 20/557 (3%)

Query: 115 PIVIKACTDLAWRK----LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD 170
           P VIKAC   A+++    LG  LH   L  G D DT V N LI+MY  F    A RKVFD
Sbjct: 50  PSVIKAC---AFQQEPFLLGAQLHCLCLKAGADCDTVVSNSLISMYAKFSRKYAVRKVFD 106

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL-KEIE 229
            M     VS+ ++I+   ++    EA+ +   M   G  P    V S+L  C  +    +
Sbjct: 107 EMLHRDTVSYCSIINSCCQDGLLYEAMKLIKEMYFYGFIPKSELVASLLALCTRMGSSSK 166

Query: 230 MGRMIHELV-AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
           + RM H LV    R+ +++    ALVDMY+K      A  VFD+M  ++ V+WT+MI+G 
Sbjct: 167 VARMFHALVLVDERMQESVLLSTALVDMYLKFDDHAAAFHVFDQMEVKNEVSWTAMISGC 226

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL----HAWTIKQNL 344
             N +    + LF+ MQ E +RPN +T+ S+L AC  L Y   G SL    H ++ +   
Sbjct: 227 VANQNYEMGVDLFRAMQRENLRPNRVTLLSVLPACVELNY---GSSLVKEIHGFSFRHGC 283

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
             +  +  A + MY +C  V LS  +F  +  +  V W+++++G    G   + + L  Q
Sbjct: 284 HADERLTAAFMTMYCRCGNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQ 343

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           M  E +E N  TL +++ A      L  A  +H  +++ GF+S + +   LID+Y+KCGS
Sbjct: 344 MRKEGIEANSVTLLAIVSACTNSTLLSFASTVHSQILKCGFMSHILLGNALIDMYAKCGS 403

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           L +A ++F E+   +KD+V WS +I  YG+HGHG  A+ +FK M++ G + +++ F + L
Sbjct: 404 LSAAREVFYELT--EKDLVSWSSMINAYGLHGHGSEALEIFKGMIKGGHEVDDMAFLAIL 461

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            AC+H GL++E   +F    + H   +  +HY C ++LLGR G++D+A+++   MP+KP+
Sbjct: 462 SACNHAGLVEEAQTIFTQAGKYHMPVT-LEHYACYINLLGRFGKIDDAFEVTINMPMKPS 520

Query: 585 HAVWGALLGACVIHGNVEL-GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643
             +W +LL AC  HG +++ G++ A  L + EP+NP NYVLLSK+++    +  AE VR 
Sbjct: 521 ARIWSSLLSACETHGRLDVAGKIIANELMKSEPDNPANYVLLSKIHTESGNYHAAEEVRR 580

Query: 644 VMDEKGLRKAPAHSLIE 660
           VM  + L K    S IE
Sbjct: 581 VMQRRKLNKCYGFSKIE 597



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 133/481 (27%), Positives = 237/481 (49%), Gaps = 21/481 (4%)

Query: 34  QLHAFIITSGP-LFTHLRSSLVRAYGHVSN---VRILFDEMSERSSFLYNTVMKMYAQNG 89
           QLH   + +G    T + +SL+  Y   S    VR +FDEM  R +  Y +++    Q+G
Sbjct: 68  QLHCLCLKAGADCDTVVSNSLISMYAKFSRKYAVRKVFDEMLHRDTVSYCSIINSCCQDG 127

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL-AWRKLGIALHGRVLITG-FDMDTF 147
             ++++K+   M   G + P +     ++  CT + +  K+    H  VL+         
Sbjct: 128 LLYEAMKLIKEMYFYG-FIPKSELVASLLALCTRMGSSSKVARMFHALVLVDERMQESVL 186

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           +   L+ MY+ F +  AA  VFD M   + VSW  +ISG   N   +  + +F  M +  
Sbjct: 187 LSTALVDMYLKFDDHAAAFHVFDQMEVKNEVSWTAMISGCVANQNYEMGVDLFRAMQREN 246

Query: 208 VEPDCASVVSVLPAC-------GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           + P+  +++SVLPAC         +KEI      H   A  RL        A + MY +C
Sbjct: 247 LRPNRVTLLSVLPACVELNYGSSLVKEIHGFSFRHGCHADERLTA------AFMTMYCRC 300

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           G+V+ +R++F+    RDVV W+SMI+GYA  GD    + L   M+ EG+  NS+T+ +++
Sbjct: 301 GNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTLLAIV 360

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           SAC++   L    ++H+  +K      +++  ALIDMYAKC  +  + +VF   ++K  V
Sbjct: 361 SACTNSTLLSFASTVHSQILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYELTEKDLV 420

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            W++++     +G   +A+E+F+ M+    E +D    ++L A      +++A  I    
Sbjct: 421 SWSSMINAYGLHGHGSEALEIFKGMIKGGHEVDDMAFLAILSACNHAGLVEEAQTIFTQA 480

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
            +Y     +E     I++  + G ++ A ++   +P+K     +WS +++    HG  + 
Sbjct: 481 GKYHMPVTLEHYACYINLLGRFGKIDDAFEVTINMPMK-PSARIWSSLLSACETHGRLDV 539

Query: 501 A 501
           A
Sbjct: 540 A 540


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 191/531 (35%), Positives = 286/531 (53%), Gaps = 35/531 (6%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           LH  +       +  +G  L+  Y   GE    RKVFD M + +VV +N +I  Y  N  
Sbjct: 40  LHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHR 99

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
             + L+VF  M+  G  PD  +   VL AC   + +  G +IH  V    L  N+   N 
Sbjct: 100 YDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNG 159

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+ MY KCG + EAR VFD M  +DVV+W SM+ GYA N    +AL + + M+  G +P+
Sbjct: 160 LIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPD 219

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
             T+ SL+ A ++             T  +N+            +Y +        ++F 
Sbjct: 220 GCTMASLMPAVAN-------------TSSENV------------LYVE--------KIFV 246

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
              +K  + WN ++   + N L  +AV+L+ QM    VEP+  T  S+LPA   L+ L  
Sbjct: 247 NLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLL 306

Query: 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492
              IH Y+ +      + +   LID+Y++CG L+ A ++F    +K +D+  W+ +I+ Y
Sbjct: 307 GRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDR--MKFRDVASWTSLISAY 364

Query: 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
           GM G G  AV+LF EM+ SG  P+ + F + L ACSH GLLDEG   F  M ++++   R
Sbjct: 365 GMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPR 424

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612
            +HY C+VDLLGRAGR+DEAY++I+ MP++P   VW  LL +C +  N+++G +AA  L 
Sbjct: 425 IEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILAADNLL 484

Query: 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +L PE  G YVLLS +Y+   RWK+   +R VM  K +RK P  S +E+ N
Sbjct: 485 QLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNN 535



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 144/484 (29%), Positives = 235/484 (48%), Gaps = 49/484 (10%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSL----VRAY---GHVSNVRILF 67
           L+ K + Q    K++   K+LH  I     L +H   SL    +R+Y   G     R +F
Sbjct: 23  LLAKALDQNPDIKTL---KKLHTMIFY---LNSHQNPSLGIKLMRSYAACGEPGLTRKVF 76

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           DEMS+R+   YN +++ Y  N    D L +F  M+  G + PDNYTYP V+KAC+     
Sbjct: 77  DEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVN-GGFRPDNYTYPCVLKACSCSENL 135

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           + G+ +HG VL  G D + FVGN LIAMY   G +  AR+VFD M    VVSWN++++GY
Sbjct: 136 RYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGY 195

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
             N    +AL +   M   G +PD  ++ S++PA                        N 
Sbjct: 196 AHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVA----------------------NT 233

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
           ++ N L   YV+         +F  +  +++++W  MI  Y  N     A+ L+  M+  
Sbjct: 234 SSENVL---YVE--------KIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKC 282

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
            V P+++T  S+L AC  L  L  GR +H +  K+ L   +++E +LIDMYA+C  +  +
Sbjct: 283 RVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDA 342

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
            +VF R   +    W ++++     G    AV LF +ML     P+     ++L A +  
Sbjct: 343 KRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHS 402

Query: 428 ADLQQA-MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
             L +  +        Y     +E    L+D+  + G ++ A+ I  ++PI+  +  VW+
Sbjct: 403 GLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNE-RVWA 461

Query: 487 VIIA 490
            +++
Sbjct: 462 TLLS 465



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 165/368 (44%), Gaps = 37/368 (10%)

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
           +I+  + +H ++      +N +    L+  Y  CG     R VFD MS+R+VV +  MI 
Sbjct: 33  DIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIR 92

Query: 287 GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346
            Y  N    + L +F+ M   G RP++ T   +L ACS    L+ G  +H   +K  L+ 
Sbjct: 93  SYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDF 152

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
            + V   LI MY KC  +  + +VF     K  V WN+++AG  HN     A+E+ R+M 
Sbjct: 153 NLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREME 212

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
               +P+  T+ SL+PA A         N     + Y                       
Sbjct: 213 DYGQKPDGCTMASLMPAVA---------NTSSENVLY----------------------- 240

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
              KIF  + ++ K+++ W+V+I  Y  +     AV L+ +M +  V+P+ +TF S L A
Sbjct: 241 -VEKIF--VNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPA 297

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           C     L  G  +  + +E  + C        ++D+  R G LD+A  +   M  +   A
Sbjct: 298 CGDLSALLLGRRIHEY-VEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDV-A 355

Query: 587 VWGALLGA 594
            W +L+ A
Sbjct: 356 SWTSLISA 363



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 2/215 (0%)

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           + G L  A      +K  + LH      N      +   L+  YA C    L+ +VF   
Sbjct: 20  SFGLLAKALDQNPDIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEM 79

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
           S +  V +N ++   V+N      + +FR+M+     P++ T   +L A +   +L+  +
Sbjct: 80  SDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGL 139

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            IH  +++ G    + V  GLI +Y KCG L  A ++F E+    KD+V W+ ++AGY  
Sbjct: 140 LIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIW--KDVVSWNSMVAGYAH 197

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
           +   + A+ + +EM   G +P+  T  S + A ++
Sbjct: 198 NMRFDDALEICREMEDYGQKPDGCTMASLMPAVAN 232


>gi|357129835|ref|XP_003566566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Brachypodium distachyon]
          Length = 614

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 196/520 (37%), Positives = 281/520 (54%), Gaps = 13/520 (2%)

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N L++MY   G    A +VFD M     VSWN+LI     ++ A++AL  F  ML+S   
Sbjct: 59  NALVSMYARCGRHAEAARVFDEMRIRDSVSWNSLIG----SSGAEDALSQFRRMLRSSSS 114

Query: 210 P------DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
           P      D A+  +VL AC     +    M+H LV        ++  NALV  Y +C S 
Sbjct: 115 PGGGVSCDHATFTTVLSACAREASLPTCAMVHGLVVSRGFEAEVSVGNALVTAYFECESP 174

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
             A   F  M+ER+V+TWT+MI+G A     ++++ LFQ M+   V  NS T  S L AC
Sbjct: 175 GSAERAFHGMAERNVITWTAMISGMAREELYKDSIVLFQQMR-RTVDANSATYSSSLLAC 233

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
           +    LK G+ +H   +K  LE ++ VE+ L+D+Y+KC L++ +  VF    +   +   
Sbjct: 234 AGSLALKEGQQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVFRLCRQPDEISLT 293

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
            IL G   NGL  KA ELF +M  E +  +   ++++L A+   A       IH  +I+ 
Sbjct: 294 VILVGFAQNGLEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASAPFALGKQIHALVIKK 353

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
            F   + V  GLI++YSKCG LE + ++F+E P K+   + W+ IIA +  HG G     
Sbjct: 354 CFGRNIYVCNGLINMYSKCGELEESIQVFNETPSKNS--ISWNSIIAAFARHGQGSEVFK 411

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563
           LF+ M   G  P +VTF S LH CSH G   +GL++ N M   +    R +HY C+VD+L
Sbjct: 412 LFESMKADGANPTDVTFLSLLHGCSHVGSAKKGLEILNSMSSEYGILPRVEHYACVVDML 471

Query: 564 GRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623
           GRAG L++A   I   P K +  +W AL+GAC   GN E+G+ AA+ L  L+P++P  YV
Sbjct: 472 GRAGLLEDARSFIEDGPFKDSALLWQALMGACSFRGNSEIGKYAAEKLLHLDPDSPAAYV 531

Query: 624 LLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           LLS +YS+  RW D   V   M E GLRK    S IE+  
Sbjct: 532 LLSNIYSSEGRWDDRARVMKSMREMGLRKDTGKSWIELEK 571



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 134/472 (28%), Positives = 221/472 (46%), Gaps = 23/472 (4%)

Query: 44  PLFTHLRSSLV----------RAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHD 93
           PL   LR  LV          R   H    R+ FDEM  R S  +N+++     +  + D
Sbjct: 46  PLRPSLRHVLVAWNALVSMYARCGRHAEAARV-FDEMRIRDSVSWNSLIG----SSGAED 100

Query: 94  SLKMFLGMLRLGEYNP-----DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           +L  F  MLR           D+ T+  V+ AC   A       +HG V+  GF+ +  V
Sbjct: 101 ALSQFRRMLRSSSSPGGGVSCDHATFTTVLSACAREASLPTCAMVHGLVVSRGFEAEVSV 160

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           GN L+  Y       +A + F  M E +V++W  +ISG  +    K+++V+F  M ++ V
Sbjct: 161 GNALVTAYFECESPGSAERAFHGMAERNVITWTAMISGMAREELYKDSIVLFQQMRRT-V 219

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           + + A+  S L AC     ++ G+ IH LV    L  ++   + L+D+Y KCG + +   
Sbjct: 220 DANSATYSSSLLACAGSLALKEGQQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLS 279

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VF    + D ++ T ++ G+A NG    A  LF  M  EG+  ++  + ++L A  +   
Sbjct: 280 VFRLCRQPDEISLTVILVGFAQNGLEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASAP 339

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
              G+ +HA  IK+     + V   LI+MY+KC  ++ S QVF  T  K ++ WN+I+A 
Sbjct: 340 FALGKQIHALVIKKCFGRNIYVCNGLINMYSKCGELEESIQVFNETPSKNSISWNSIIAA 399

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI-HCYLIRYGFLS 447
              +G   +  +LF  M  +   P D T  SLL   + +   ++ + I +     YG L 
Sbjct: 400 FARHGQGSEVFKLFESMKADGANPTDVTFLSLLHGCSHVGSAKKGLEILNSMSSEYGILP 459

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            VE    ++D+  + G LE A     + P KD  + +W  ++      G+ E
Sbjct: 460 RVEHYACVVDMLGRAGLLEDARSFIEDGPFKDSAL-LWQALMGACSFRGNSE 510



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 200/441 (45%), Gaps = 37/441 (8%)

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGG-----------RLGKNIAAWNALVDMYVK 259
           D A +  +L  CG   +  +G  +H  +               L   + AWNALV MY +
Sbjct: 8   DYAYLSGLLSRCGRAADHRLGAALHVTIVKNPSHFLLCPLRPSLRHVLVAWNALVSMYAR 67

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM------QFEGVRPNS 313
           CG   EA  VFD M  RD V+W S+I     +    +AL  F+ M         GV  + 
Sbjct: 68  CGRHAEAARVFDEMRIRDSVSWNSLIG----SSGAEDALSQFRRMLRSSSSPGGGVSCDH 123

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            T  ++LSAC+    L     +H   + +  E EV V  AL+  Y +C     + + F  
Sbjct: 124 ATFTTVLSACAREASLPTCAMVHGLVVSRGFEAEVSVGNALVTAYFECESPGSAERAFHG 183

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
            +++  + W A+++G     L + ++ LF+QM    V+ N AT +S L A A    L++ 
Sbjct: 184 MAERNVITWTAMISGMAREELYKDSIVLFQQMR-RTVDANSATYSSSLLACAGSLALKEG 242

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             IH  +++ G  + + V +GL+D+YSKCG +E    +F     +  D +  +VI+ G+ 
Sbjct: 243 QQIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVFR--LCRQPDEISLTVILVGFA 300

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
            +G  E A  LF EM   G+  +    ++ L A         G  +   ++   + C   
Sbjct: 301 QNGLEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASAPFALGKQIHALVI---KKCFGR 357

Query: 554 DHYTC--IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
           + Y C  ++++  + G L+E+  +    P K + + W +++ A   HG    G    K L
Sbjct: 358 NIYVCNGLINMYSKCGELEESIQVFNETPSKNSIS-WNSIIAAFARHGQ---GSEVFK-L 412

Query: 612 FE---LEPENPGNYVLLSKLY 629
           FE    +  NP +   LS L+
Sbjct: 413 FESMKADGANPTDVTFLSLLH 433



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 169/376 (44%), Gaps = 8/376 (2%)

Query: 24  AATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSN---VRILFDEMSERSSFLYN 79
           A   S+     +H  +++ G      + ++LV AY    +       F  M+ER+   + 
Sbjct: 134 AREASLPTCAMVHGLVVSRGFEAEVSVGNALVTAYFECESPGSAERAFHGMAERNVITWT 193

Query: 80  TVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLI 139
            ++   A+     DS+ +F  M R  + N   Y+  ++  AC      K G  +HG V+ 
Sbjct: 194 AMISGMAREELYKDSIVLFQQMRRTVDANSATYSSSLL--ACAGSLALKEGQQIHGLVVK 251

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
            G + D  V + L+ +Y   G ++    VF    +   +S   ++ G+ +N   ++A  +
Sbjct: 252 AGLETDLHVESGLMDLYSKCGLMEDTLSVFRLCRQPDEISLTVILVGFAQNGLEEKAFEL 311

Query: 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVK 259
           F  M   G+  D   V +VL A G      +G+ IH LV     G+NI   N L++MY K
Sbjct: 312 FAEMAGEGILIDTNMVSAVLGAFGASAPFALGKQIHALVIKKCFGRNIYVCNGLINMYSK 371

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
           CG + E+  VF+    ++ ++W S+I  +A +G       LF+ M+ +G  P  +T  SL
Sbjct: 372 CGELEESIQVFNETPSKNSISWNSIIAAFARHGQGSEVFKLFESMKADGANPTDVTFLSL 431

Query: 320 LSACSSLYYLKRGRS-LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS-KK 377
           L  CS +   K+G   L++ + +  +   V     ++DM  +  L++ +         K 
Sbjct: 432 LHGCSHVGSAKKGLEILNSMSSEYGILPRVEHYACVVDMLGRAGLLEDARSFIEDGPFKD 491

Query: 378 KTVPWNAILAGCVHNG 393
             + W A++  C   G
Sbjct: 492 SALLWQALMGACSFRG 507



 Score = 43.5 bits (101), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 126/283 (44%), Gaps = 38/283 (13%)

Query: 13  THLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF---THLRSSLVRAY---GHVSNVRIL 66
           T++V  ++  + A+   A  KQ+HA +I     F    ++ + L+  Y   G +     +
Sbjct: 324 TNMVSAVLGAFGASAPFALGKQIHALVIKK--CFGRNIYVCNGLINMYSKCGELEESIQV 381

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           F+E   ++S  +N+++  +A++G   +  K+F  M   G  NP + T+  ++  C+ +  
Sbjct: 382 FNETPSKNSISWNSIIAAFARHGQGSEVFKLFESMKADGA-NPTDVTFLSLLHGCSHVGS 440

Query: 127 RKLGIALHGRVLITGFDMDTFVGN--CLIAMYMNFGEVKAARK-VFDAMWEHSVVSWNTL 183
            K G+ +    + + + +   V +  C++ M    G ++ AR  + D  ++ S + W  L
Sbjct: 441 AKKGLEILNS-MSSEYGILPRVEHYACVVDMLGRAGLLEDARSFIEDGPFKDSALLWQAL 499

Query: 184 ISG-YFK-----NAYAKEALVVFD------WMLKSGVEP------DCASVVSVLPACGYL 225
           +    F+       YA E L+  D      ++L S +        D A V+  +   G  
Sbjct: 500 MGACSFRGNSEIGKYAAEKLLHLDPDSPAAYVLLSNIYSSEGRWDDRARVMKSMREMGLR 559

Query: 226 KE-----IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
           K+     IE+ + +H  V G    +  +A   + DM ++  +V
Sbjct: 560 KDTGKSWIELEKEVHSFVVGSPASRPDSA--TMDDMMLQLSAV 600


>gi|413944103|gb|AFW76752.1| hypothetical protein ZEAMMB73_846363 [Zea mays]
          Length = 562

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 184/538 (34%), Positives = 306/538 (56%), Gaps = 6/538 (1%)

Query: 125 AWRKLGIALHGRVLIT--GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT 182
           A+R+ G ++H R +IT      D  +   L+  Y +FG+V AAR+VFD M   SVVSW  
Sbjct: 26  AFRQ-GKSVHHRAIITSSASPPDLHLNTKLVIFYSHFGDVAAARRVFDGMPHRSVVSWTA 84

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           ++SGY KN+  +EAL +F +ML+SG  P+  +  S + AC   +    G  IH   A GR
Sbjct: 85  MVSGYAKNSRPQEALDLFAFMLRSGARPNQFTFGSAVRACTGARCARSGEQIHACAAKGR 144

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
              ++   +AL+DM+++CGSV +AR +F  M  +D+V+W S++ G+       +ALGLF 
Sbjct: 145 FAGDMFVQSALMDMHLRCGSVGDARRLFAEMERKDLVSWNSLMRGFVEREHCNDALGLFD 204

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            M  +G+ P+  T GS L AC ++  L     +HA  IK     E +   +LID YAKC 
Sbjct: 205 SMLRDGMLPDHFTFGSALKACGAISVLFNVELIHACIIKLGYWDENVAIASLIDSYAKCR 264

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAG-CVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
            +  +  ++    +   V   A+++G  +    +  A++LF ++  + +  +   L+SLL
Sbjct: 265 SLSSARVIYDSMCEPDLVSSTALISGYSMDRNYSDDAMKLFCKIHRKGLRIDAILLSSLL 324

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
              A +A ++    IH Y+ +   +  + +   L+D+Y+K G    + + F E+P  +++
Sbjct: 325 GVCANVASIKFGTQIHAYMHKKQPMGDLALDNALVDMYAKSGEFLDSRRAFDEMP--NRN 382

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           ++ W+ +I     HG GE AV+LF  M + GV+PN+VTF S L ACSH G++++G++ F 
Sbjct: 383 VISWTSLITSCAQHGFGEDAVTLFARMEEDGVKPNDVTFLSLLSACSHSGMMNKGMEYFT 442

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            M+  +    R  HY+  VDLL R G+L++A+ L++    +   +++G +LGAC +HGN+
Sbjct: 443 SMMSKYGIDPRFKHYSSAVDLLARGGQLEDAWMLVQNTNTECKSSMYGTMLGACKVHGNM 502

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
            LGE AAK L  ++PE+  NY +L+ +Y+    W+DA+  R ++ E    K    S+I
Sbjct: 503 PLGETAAKNLLSIDPESSVNYAVLANMYAESHLWEDAQRTRKLLVETSKGKEAGFSVI 560



 Score =  225 bits (574), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 144/478 (30%), Positives = 252/478 (52%), Gaps = 14/478 (2%)

Query: 36  HAFIITSG--PLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGA 90
           H  IITS   P   HL + LV  Y H  +V   R +FD M  RS   +  ++  YA+N  
Sbjct: 35  HRAIITSSASPPDLHLNTKLVIFYSHFGDVAAARRVFDGMPHRSVVSWTAMVSGYAKNSR 94

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             ++L +F  MLR G   P+ +T+   ++ACT     + G  +H       F  D FV +
Sbjct: 95  PQEALDLFAFMLRSGA-RPNQFTFGSAVRACTGARCARSGEQIHACAAKGRFAGDMFVQS 153

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            L+ M++  G V  AR++F  M    +VSWN+L+ G+ +  +  +AL +FD ML+ G+ P
Sbjct: 154 ALMDMHLRCGSVGDARRLFAEMERKDLVSWNSLMRGFVEREHCNDALGLFDSMLRDGMLP 213

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           D  +  S L ACG +  +    +IH  ++  G   +N+A   +L+D Y KC S++ AR++
Sbjct: 214 DHFTFGSALKACGAISVLFNVELIHACIIKLGYWDENVAI-ASLIDSYAKCRSLSSARVI 272

Query: 270 FDRMSERDVVTWTSMINGYALNGDVR-NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +D M E D+V+ T++I+GY+++ +   +A+ LF  +  +G+R +++ + SLL  C+++  
Sbjct: 273 YDSMCEPDLVSSTALISGYSMDRNYSDDAMKLFCKIHRKGLRIDAILLSSLLGVCANVAS 332

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           +K G  +HA+  K+    ++ ++ AL+DMYAK      S + F     +  + W +++  
Sbjct: 333 IKFGTQIHAYMHKKQPMGDLALDNALVDMYAKSGEFLDSRRAFDEMPNRNVISWTSLITS 392

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI-RYGFLS 447
           C  +G    AV LF +M  + V+PND T  SLL A +    + + M     ++ +YG   
Sbjct: 393 CAQHGFGEDAVTLFARMEEDGVKPNDVTFLSLLSACSHSGMMNKGMEYFTSMMSKYGIDP 452

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH---GETAV 502
             +  +  +D+ ++ G LE A  +      + K   ++  ++    +HG+   GETA 
Sbjct: 453 RFKHYSSAVDLLARGGQLEDAWMLVQNTNTECKS-SMYGTMLGACKVHGNMPLGETAA 509


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 181/500 (36%), Positives = 283/500 (56%), Gaps = 11/500 (2%)

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           D   E +V ++N +ISG+  N + +E    +  M   GV PD  +    + AC  + EI 
Sbjct: 97  DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEI- 155

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
             + IH L+    L  ++   +ALV+ Y+K G +  A++ F+ +  RDVV W +M+NGYA
Sbjct: 156 --KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYA 213

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
             G     L  F+ M  E V P+  T+   LS  + +  L  GR +H + +K   +  V 
Sbjct: 214 QIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVA 273

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           V  +LIDMY KC  ++ + ++F    +K    WN+I++     G     + L  +ML   
Sbjct: 274 VSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAG 333

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF------LSVVEVSTGLIDIYSKCG 463
           ++P+  T+ ++LPA + LA L     IH Y+I  G       +  V +   +ID+Y+KCG
Sbjct: 334 IQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCG 393

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
           S+  AH +F  +   +KD+  W+++I GYGMHG+G  A+ +F  M +  ++P+EVTF   
Sbjct: 394 SMRDAHLVFERM--SNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGV 451

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           L ACSH G + +G +    M   +      +HYTC++D+LGRAG+LDEAY+L  TMP++ 
Sbjct: 452 LSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEA 511

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643
              VW ALL AC +H +  L EVAA+ +FELEPE+ G+YVL+S +Y AV R+++   VR 
Sbjct: 512 NPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRH 571

Query: 644 VMDEKGLRKAPAHSLIEVRN 663
            M ++ +RK P  S IE++N
Sbjct: 572 TMRQQNVRKTPGCSWIELKN 591



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 125/437 (28%), Positives = 220/437 (50%), Gaps = 12/437 (2%)

Query: 68  DEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWR 127
           D   E + F +N ++  +  NG   +  + +  M   G   PD +T+P  IKAC D+   
Sbjct: 97  DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEG-VMPDKFTFPCAIKACLDVLEI 155

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           K    +HG +   G ++D F+G+ L+  Y+ FG ++ A+  F+ +    VV WN +++GY
Sbjct: 156 K---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGY 212

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            +    +  L  F  M    V P   +V   L     + ++  GR+IH           +
Sbjct: 213 AQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGV 272

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
           A  N+L+DMY KC  + +A  +F+ M E+D+ +W S+++ +   GD    L L   M   
Sbjct: 273 AVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGA 332

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC------EVIVETALIDMYAKC 361
           G++P+ +T+ ++L ACS L  L  GR +H + I   L        +V+++ A+IDMYAKC
Sbjct: 333 GIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKC 392

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
             ++ +  VF R S K    WN ++ G   +G   +A+E+F +M    ++P++ T   +L
Sbjct: 393 GSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVL 452

Query: 422 PAYAILADLQQAMNIHCYL-IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
            A +    + Q  N    +  +Y     +E  T +ID+  + G L+ A+++   +PI + 
Sbjct: 453 SACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPI-EA 511

Query: 481 DIVVWSVIIAGYGMHGH 497
           + VVW  ++A   +H H
Sbjct: 512 NPVVWRALLAACRLHKH 528



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 115/372 (30%), Positives = 193/372 (51%), Gaps = 19/372 (5%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           K++H  +   G  L   + S+LV  Y   G + + ++ F+E+  R   L+N ++  YAQ 
Sbjct: 156 KKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQI 215

Query: 89  GASHDSLKMFLGMLRLGEYN--PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDT 146
           G     L+ F    R+ + +  P  +T    +     +     G  +HG  +  G+D   
Sbjct: 216 GQFEMVLETF---RRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGV 272

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
            V N LI MY     ++ A ++F+ M E  + SWN+++S + +       L + D ML +
Sbjct: 273 AVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGA 332

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHE--LVAG-GRLGKNIAA---WNALVDMYVKC 260
           G++PD  +V +VLPAC +L  +  GR IH   +V+G G+ GK+I      NA++DMY KC
Sbjct: 333 GIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKC 392

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           GS+ +A LVF+RMS +DV +W  MI GY ++G    AL +F  M    ++P+ +T   +L
Sbjct: 393 GSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVL 452

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVE--TALIDMYAKCNLVKLSFQV-FARTSKK 377
           SACS   ++ +GR+     +K   +    +E  T +IDM  +   +  ++++      + 
Sbjct: 453 SACSHAGFVSQGRNFLV-QMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEA 511

Query: 378 KTVPWNAILAGC 389
             V W A+LA C
Sbjct: 512 NPVVWRALLAAC 523


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 212/657 (32%), Positives = 341/657 (51%), Gaps = 27/657 (4%)

Query: 25  ATKSIAGT--KQLHAFIITSG-----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFL 77
           A KS  G   +Q+HA     G     P   +   S+    G V +   +F+ M+ R+   
Sbjct: 73  ALKSCRGDDGRQVHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVS 132

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRL--GEYNPDNYTYPIVIKACTDLAWRKLGIALHG 135
           +N +M   A        L++F   L    G   PD  T   V+  C  LAW + G A+HG
Sbjct: 133 WNALMAAVAD---PRRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHG 189

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF---DAMWEHSVVSWNTLISGYFKNAY 192
             + +G+D    V N L+ MY   GE+  A   F         +VVSWN ++ GY +N  
Sbjct: 190 LAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGE 249

Query: 193 AKEALVVFD--WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA- 249
           A  A  +     M + GV  D  +++SVLP C  L E+   R +H  V   R G ++   
Sbjct: 250 AGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLRELHAFVV--RRGLHLTGD 307

Query: 250 --WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
              NAL+  Y +CG +  A  VFD +  + V +W ++I  +A NG+   A+ LF+ M   
Sbjct: 308 MVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNA 367

Query: 308 -GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
            G +P+  +IGSLL AC +L +L  G++ H + ++  LE +  +  +L+ +Y +C    L
Sbjct: 368 CGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESL 427

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE--PNDATLNSLLPAY 424
           +  +F    +K  V WN ++AG   NGL  ++++LFR+M  +     P+     S L A 
Sbjct: 428 ARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVAC 487

Query: 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           + L  ++    +HC+ ++        +S+ +ID+YSKCGS++ A   F  +  K KD V 
Sbjct: 488 SELPAVRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRL--KAKDAVS 545

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+V+I GY ++G G+ AV L+ +M + G++P+  T+   L AC H G+L++GL  F  M 
Sbjct: 546 WTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQEMR 605

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
              +  ++ +HY C++ +L RAGR  +A  L+  MP +P   +  ++L AC +HG VELG
Sbjct: 606 NLPKIEAKLEHYACVIGMLSRAGRFADAVALMEVMPEEPDAKILSSVLSACHMHGEVELG 665

Query: 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +  A  L ELEP    +YVL S +Y+  R+W +   VR ++ + G+ K P  S I++
Sbjct: 666 KKVADKLLELEPHKAEHYVLASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGCSWIDI 722



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 162/509 (31%), Positives = 251/509 (49%), Gaps = 24/509 (4%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGE-YNPDNYTYPIVIKACTDLAWRKLGIALHGR 136
           +N ++   ++ G   D+L +   +L   +   PD +T P  +K+C     R+    +H  
Sbjct: 33  WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRGDDGRQ----VHAV 88

Query: 137 VLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
               G  D D FVGN L++MY   G V  A KVF+ M   ++VSWN L++     A  + 
Sbjct: 89  AAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAV---ADPRR 145

Query: 196 ALVVFDWMLKS---GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
            L +F   L+       PD A++V+VLP C  L   E GR +H L             N 
Sbjct: 146 GLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNV 205

Query: 253 LVDMYVKCGSVNEARLVF---DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE-- 307
           LVDMY KCG + +A   F      + R+VV+W  M+ GYA NG+   A GL + MQ E  
Sbjct: 206 LVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEER 265

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE-VIVETALIDMYAKCNLVKL 366
           GV  + +T+ S+L  CS L  L + R LHA+ +++ L     +V  ALI  Y +C  +  
Sbjct: 266 GVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLH 325

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE-PNDATLNSLLPAYA 425
           + +VF     K    WNA++     NG A  A+ELFR+M     + P+  ++ SLL A  
Sbjct: 326 ACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACG 385

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            L  L      H +++R G      +   L+ +Y +CG    A  +F    +++KD V W
Sbjct: 386 NLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDA--VEEKDEVSW 443

Query: 486 SVIIAGYGMHGHGETAVSLFKEMV--QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
           + +IAGY  +G    ++ LF+EM   + G  P+ +  TSAL ACS    +  G ++  F 
Sbjct: 444 NTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKEMHCFA 503

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEA 572
           L+    C  +   + I+D+  + G +D+A
Sbjct: 504 LKA-DLCEDSFLSSSIIDMYSKCGSVDDA 531


>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 190/576 (32%), Positives = 313/576 (54%), Gaps = 14/576 (2%)

Query: 99  LGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMN 158
           L  +R G      +  PI ++ C D         +H  ++ TG   D F+   L+ +Y  
Sbjct: 58  LSFIREGTKVESAFYVPI-LQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAK 116

Query: 159 FGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSV 218
            G ++ ARKVFD +   +VVSW TL++GY  ++  + A+ VF  ML++G  P   ++ + 
Sbjct: 117 CGTMETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTA 176

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
           L A   L   E+G+ IH      R+  + +  N+L  +Y KCGS+  A   F R+ +++V
Sbjct: 177 LSASSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNV 236

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           ++WT++I+ +  NG+    L  F  M  E V PN  T+ S LS C  +  L  G  +H+ 
Sbjct: 237 ISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSL 296

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG------CVHN 392
           TIK   E  + ++ +++ +Y KC  +  + ++F        V WNA++AG         +
Sbjct: 297 TIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKD 356

Query: 393 GLA-----RKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
            LA      +A+ +F ++    ++P+  T +S+L   + L  L+Q   +H   I+ GFLS
Sbjct: 357 DLAAHQCGTEALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLS 416

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            V V T L+++Y+KCGS+E A K F E+ I+   ++ W+ +I GY  +G  + A+ LF++
Sbjct: 417 DVVVGTALVNMYNKCGSIERASKAFVEMSIRT--LISWTSMITGYAQNGQPQQALLLFED 474

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M  +GV+PN++TF   L ACSH G++DE LD F  M   ++     DHY C++D+  R G
Sbjct: 475 MRLAGVRPNKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITPVMDHYACLIDMFVRLG 534

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
           RLDEA+D I+ M L+P   +W  L+  C   G +ELG  AA+ L  L+P++   Y LL  
Sbjct: 535 RLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGKLELGFYAAEQLLNLKPKDTETYNLLLN 594

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +Y +  +WK+   VR +M E+ L +    S I +++
Sbjct: 595 MYLSAGKWKEVSRVRKMMKEEKLGRLKDWSWISIKD 630



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 147/499 (29%), Positives = 255/499 (51%), Gaps = 18/499 (3%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSGP-LFTHLRSSLVRAY---GHVSNVRILFDEMSE 72
           + ++Q+    K ++  +++HA I+ +G      L + LV  Y   G +   R +FDE+  
Sbjct: 73  VPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKCGTMETARKVFDELPR 132

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           R+   + T+M  Y  +     ++++F  ML  G Y P NYT    + A +DL  ++LG  
Sbjct: 133 RNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAY-PTNYTLGTALSASSDLHSKELGKQ 191

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +HG  +    + D  +GN L ++Y   G ++ A K F  + + +V+SW T+IS +  N  
Sbjct: 192 IHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGE 251

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
           A   L  F  ML   VEP+  ++ S L  C  ++ +++G  IH L        N+   N+
Sbjct: 252 AATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNS 311

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV-----------RNALGLF 301
           ++ +Y+KCG ++EA+ +FD M    +VTW +MI G+A   D              AL +F
Sbjct: 312 IMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIF 371

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
             +   G++P+  T  S+LS CSSL  L++G  +HA TIK     +V+V TAL++MY KC
Sbjct: 372 LKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKC 431

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
             ++ + + F   S +  + W +++ G   NG  ++A+ LF  M +  V PN  T   +L
Sbjct: 432 GSIERASKAFVEMSIRTLISWTSMITGYAQNGQPQQALLLFEDMRLAGVRPNKITFVGVL 491

Query: 422 PAYAILADLQQAMNIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
            A +    + +A++    +   Y    V++    LID++ + G L+ A     E+ ++  
Sbjct: 492 SACSHAGMVDEALDYFQMMKNEYKITPVMDHYACLIDMFVRLGRLDEAFDFIKEMDLEPN 551

Query: 481 DIVVWSVIIAGYGMHGHGE 499
           +  +WS++IAG    G  E
Sbjct: 552 EF-IWSILIAGCRSQGKLE 569


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 205/656 (31%), Positives = 341/656 (51%), Gaps = 58/656 (8%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH--LRSSLVRAY---GHVSNVRILFDE 69
           L+ KL++Q  + K++     +HA ++ SG + +     + L+R Y   G VS    LFDE
Sbjct: 5   LISKLLKQCRSLKTLT---TIHAHLLISGSIASSDLTLNKLLRLYSKFGAVSYAHKLFDE 61

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
             E +SFL+  ++  + +N    ++   F+ M R     P N+T   V+KA + L   K 
Sbjct: 62  TPEPNSFLWTALIHGFTENNQYENAFAFFIKMHR-ENIVPLNFTIASVLKAVSRLGRIKD 120

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  ++G  +  G++ D  V N +I ++M  GE+ +AR++FD M E   VSWN++I+GY  
Sbjct: 121 GDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGN 180

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N     A  +FD M +                                       +N+ +
Sbjct: 181 NGRVDIARKLFDRMEE---------------------------------------RNVIS 201

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
           W +++  YVK G + EAR++F+RM E+D+ +W  M++ Y   G++  A  LF+LM    V
Sbjct: 202 WTSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMVSAYMSVGNLVAARNLFELMPIHDV 261

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
              +L    ++S C     +   +       ++N+   V++    ID Y K   V  +  
Sbjct: 262 GTWNL----MISGCCKAGEMDAAKEFFDRMQERNVASWVMI----IDGYIKVGDVDAARS 313

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           VF +  +K  V W+ ++ G    G    +++L++    + ++P++     ++ A + L  
Sbjct: 314 VFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGIISACSQLGV 373

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
              A ++ C  +       ++V T LID+Y+KCG++E A ++F    +  KD+  +S +I
Sbjct: 374 PDTAESVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQVFE--MVDQKDLHCYSTVI 431

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
             +  HG  E A+SLF EM ++ ++P+ V F   L AC+HGGL+ EG  LF  M++ +  
Sbjct: 432 TAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQMIDEYGI 491

Query: 550 CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
                HY C+VD+LGRAG L+EA+ LI +MP+ P   VWGALL AC +H NV+L E AA 
Sbjct: 492 QPSEKHYACMVDILGRAGCLEEAHSLICSMPVAPNATVWGALLSACRVHLNVQLAEAAAT 551

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
            LF++EP N GNYVLL  +Y+   +W D   VR ++ E  +RK    S IE+ +++
Sbjct: 552 ELFQIEPNNSGNYVLLFNIYADAGQWDDFSKVRAMIRENRVRKNRGSSWIELGSVI 607


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 186/574 (32%), Positives = 311/574 (54%), Gaps = 39/574 (6%)

Query: 125 AWRKLG-IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
           A+ K G +A   RV     D + F  N L++   +   V    ++F +M E   VS+N L
Sbjct: 57  AYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNAL 116

Query: 184 ISGYFKNAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           I+G+        ++ ++  +L+   V P   ++ +++     L +  +G  +H  V   R
Sbjct: 117 ITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVL--R 174

Query: 243 LGKNIAAW--NALVDMYVKCGSVNEARLVFDRMS-------------------------- 274
           LG    A+  + LVDMY K G + +AR VF  M                           
Sbjct: 175 LGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGL 234

Query: 275 -----ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
                +RD +TWT+M+ G   NG    AL +F+ M+ EGV  +  T GS+L+AC +L  L
Sbjct: 235 FQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAAL 294

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           + G+ +HA+  +   E  V V +AL+DMY+KC  ++L+  VF R + +  + W A++ G 
Sbjct: 295 EEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGY 354

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
             N  + +AV  F +M ++ ++P+D TL S++ + A LA L++    HC  +  G +  +
Sbjct: 355 GQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYI 414

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            VS  L+ +Y KCGS+E AH++F E+   D+  V W+ ++ GY   G  +  + LF++M+
Sbjct: 415 TVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ--VSWTALVTGYAQFGKAKETIDLFEKML 472

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
            +G++P+ VTF   L ACS  GL+++G D F+ M ++H      DHYTC++DL  R+GR 
Sbjct: 473 ANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRF 532

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629
            EA + I+ MP  P    W  LL +C + GN+E+G+ AA+ L E +P+NP +YVLL  ++
Sbjct: 533 KEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMH 592

Query: 630 SAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +A  +W +  ++R  M ++ ++K P  S I+ +N
Sbjct: 593 AAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKN 626



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 156/551 (28%), Positives = 271/551 (49%), Gaps = 42/551 (7%)

Query: 13  THLVIKLVQQYAATKSIAGTKQLHAFIITSGP-LFTHLRSSLVRAYGH---VSNVRILFD 68
           T L+  L+  YA +  +A  +++  F     P LFT  R++L+ A  H   V ++  LF 
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRV--FDEMPDPNLFT--RNALLSALAHSRLVPDMERLFA 103

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
            M ER +  YN ++  ++  G+   S++++  +LR     P   T   +I   + L+ R 
Sbjct: 104 SMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRA 163

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
           LG ++H +VL  GF    FVG+ L+ MY   G ++ AR+VF  M   +VV +NTLI+G  
Sbjct: 164 LGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLL 223

Query: 189 K-------------------------------NAYAKEALVVFDWMLKSGVEPDCASVVS 217
           +                               N    EAL VF  M   GV  D  +  S
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           +L ACG L  +E G+ IH  +       N+   +ALVDMY KC S+  A  VF RM+ R+
Sbjct: 284 ILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRN 343

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
           +++WT+MI GY  N     A+  F  MQ +G++P+  T+GS++S+C++L  L+ G   H 
Sbjct: 344 IISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHC 403

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
             +   L   + V  AL+ +Y KC  ++ + ++F   S    V W A++ G    G A++
Sbjct: 404 LALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKE 463

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLI 456
            ++LF +ML   ++P+  T   +L A +    +++  +    + + +G + + +  T +I
Sbjct: 464 TIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMI 523

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ-P 515
           D+YS+ G  + A +   ++P    D   W+ +++   + G+ E      + ++++  Q P
Sbjct: 524 DLYSRSGRFKEAEEFIKQMP-HSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNP 582

Query: 516 NEVTFTSALHA 526
                  ++HA
Sbjct: 583 ASYVLLCSMHA 593


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 211/644 (32%), Positives = 341/644 (52%), Gaps = 26/644 (4%)

Query: 33  KQLHAFIITSGPLFTHLR------SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMK 83
           +QLH   +  G    H R      +SLV  Y   G V     +F+ M +++   + +++ 
Sbjct: 119 EQLHCLCVKCG----HDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLT 174

Query: 84  MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD 143
             A      + + +F  M   G + P+ +T+  V+ A        LG  +H + +  G  
Sbjct: 175 GCAHAQMHSEVMALFFRMRAEGIW-PNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCR 233

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
              FV N L+ MY   G V+ A+ VF+ M    +VSWNTL++G   N    EAL +F   
Sbjct: 234 SSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHES 293

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA--GGRLGKNIAAWNALVDMYVKCG 261
             +  +   ++  +V+  C  LK++ + R +H  V   G  L  N+    AL D Y KCG
Sbjct: 294 RATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNV--MTALADAYSKCG 351

Query: 262 SVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
            + +A  +F   +  R+VV+WT++I+G   NGD+  A+ LF  M+ + V PN  T  ++L
Sbjct: 352 ELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAML 411

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
            A  S+   +    +HA  IK N +    V TAL+  Y+K    + +  +F    +K  V
Sbjct: 412 KASLSILPPQ----IHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVV 467

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL-ADLQQAMNIHCY 439
            W+A+L+     G    A  LF +M ++ ++PN+ T++S++ A A   A + Q    H  
Sbjct: 468 AWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAI 527

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
            I+Y +   + VS+ L+ +YS+ G+++SA  +F      D+D+V W+ +I+GY  HG+  
Sbjct: 528 SIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQ--TDRDLVSWNSMISGYAQHGYSM 585

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
            A+  F++M  SG+Q + VTF + +  C+H GL+ EG   F+ M+ +H+     +HY C+
Sbjct: 586 KAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACM 645

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENP 619
           VDL  RAG+LDE   LIR MP      VW  LLGAC +H NVELG+ +A  L  LEP + 
Sbjct: 646 VDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDS 705

Query: 620 GNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
             YVLLS +Y+A  +WK+ + VR +MD + ++K    S I+++N
Sbjct: 706 STYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKN 749



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 148/468 (31%), Positives = 235/468 (50%), Gaps = 10/468 (2%)

Query: 64  RILFDEMSERSSFL-YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
           R   DE+  R + +  N V+  YA+ G   + L  F  + R G    D+ T   V+KAC 
Sbjct: 52  RYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQF-SVARRGGVLVDSATLSCVLKACR 110

Query: 123 DLAWRKLGIALHGRVLITGFDM-DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWN 181
            +  R LG  LH   +  G D  +   G  L+ MYM  G V    +VF+ M + +VV+W 
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 182 TLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG 241
           +L++G        E + +F  M   G+ P+  +  SVL A      +++G+ +H      
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKF 230

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
               ++   N+L++MY KCG V +A+ VF+ M  RD+V+W +++ G  LN     AL LF
Sbjct: 231 GCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLF 290

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
              +    +    T  +++  C++L  L   R LH+  +K        V TAL D Y+KC
Sbjct: 291 HESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKC 350

Query: 362 NLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSL 420
             +  +  +F+ T+  +  V W AI++GC+ NG    AV LF +M  + V PN+ T +++
Sbjct: 351 GELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAM 410

Query: 421 LPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           L A   +   Q    IH  +I+  +  +  V T L+  YSK GS E A  IF    I+ K
Sbjct: 411 LKASLSILPPQ----IHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKM--IEQK 464

Query: 481 DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
           D+V WS +++ +   G  E A  LF +M   G++PNE T +S + AC+
Sbjct: 465 DVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACA 512



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 163/345 (47%), Gaps = 9/345 (2%)

Query: 266 ARLVFDRMSERDV-VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
           AR   D +  RD  V    ++  YA  G V   L  F + +  GV  +S T+  +L AC 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 325 SLYYLKRGRSLHAWTIKQNLE-CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
           S+     G  LH   +K   +  EV   T+L+DMY KC  V    +VF    KK  V W 
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           ++L GC H  +  + + LF +M  E + PN  T  S+L A A    L     +H   +++
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKF 230

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
           G  S V V   L+++Y+KCG +E A  +F+   ++ +D+V W+ ++AG  ++     A+ 
Sbjct: 231 GCRSSVFVCNSLMNMYAKCGLVEDAKSVFNW--METRDMVSWNTLMAGLQLNECELEALQ 288

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN--HQTCSRADHYTCIVD 561
           LF E   +  +  + T+ + +  C++   L     L + +L++  H T    +  T + D
Sbjct: 289 LFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLT---GNVMTALAD 345

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
              + G L +A ++            W A++  C+ +G++ L  V
Sbjct: 346 AYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVV 390


>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
 gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 192/523 (36%), Positives = 296/523 (56%), Gaps = 20/523 (3%)

Query: 155 MYMNFGEVKAARKVFD--AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDC 212
           MY    ++  A  V +  A +  +V ++N LISG+  N   ++ L  ++ M ++GV PD 
Sbjct: 1   MYAKCNQMNQALLVLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDK 60

Query: 213 ASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDR 272
            +   ++     + E+   + IH LV    L  ++   ++LV  Y+K   + EAR +FD 
Sbjct: 61  YTFPCLIKGLCEVMEVFQVKKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDE 120

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
           + +RDVV W SM+NGYA  G    ALG+ + M  EGV  +  T+  +LS  +       G
Sbjct: 121 IPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNG 180

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG---C 389
           R +H + IK   +  V V  ALIDMY KC  V  + ++F   ++K    WN+IL+    C
Sbjct: 181 RLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELC 240

Query: 390 V-HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
             H+G  R    LF +ML + V+ +  T+ ++LPA + LA L     IH Y+I  GF+  
Sbjct: 241 SDHDGTLR----LFDRMLGDGVQLDLVTITTILPACSHLAALVHGREIHGYMIVNGFVKD 296

Query: 449 VEVST--------GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
            E            L+D+Y+KCGS+  A  +F  +   ++D   W+++I GYGMHG+G  
Sbjct: 297 GESENMYNLQTINALMDMYAKCGSMRDAGMVFYNM--SNRDTASWNIMIMGYGMHGYGNE 354

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560
           A+ +F +M +SG++PNE+TF   L ACSH G + +G+     M   H       HYTC++
Sbjct: 355 ALYMFSDMCKSGLKPNEITFVGVLLACSHAGFISQGIKFLGEMELKHGVVPTIQHYTCVI 414

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620
           D+LGRAG+L+EAY L  TMP++    VW ALL AC ++GNV+L EVAA+ +FEL P + G
Sbjct: 415 DMLGRAGQLEEAYKLAVTMPIQTNPVVWRALLAACQLYGNVDLAEVAAQKVFELNPAHCG 474

Query: 621 NYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           NYVL+S  Y A  R+++  ++R  M ++ ++K P  S IE++N
Sbjct: 475 NYVLMSNAYVAAGRYQEVLDIRHTMRQQDVKKTPGCSWIELKN 517



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 131/438 (29%), Positives = 226/438 (51%), Gaps = 11/438 (2%)

Query: 73  RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132
           R+ F YN ++  +  NG   D L  +  M + G   PD YT+P +IK   ++        
Sbjct: 23  RNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVL-PDKYTFPCLIKGLCEVMEVFQVKK 81

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           +HG V   G D+D +VG+ L++ Y+    +K AR++FD + +  VV WN++++GY +   
Sbjct: 82  IHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARELFDEIPDRDVVLWNSMVNGYAQIGR 141

Query: 193 AKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252
             EAL V   M + GV     +V  VL       + + GR++H  +        ++  NA
Sbjct: 142 FDEALGVCREMSQEGVLMSKFTVSGVLSVFAGRGDFDNGRLVHGFMIKMGFDSCVSVCNA 201

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+DMY KC  V +A  +F+ M+E+D+ +W S+++   L  D    L LF  M  +GV+ +
Sbjct: 202 LIDMYGKCRCVVDALEIFETMNEKDIFSWNSILSANELCSDHDGTLRLFDRMLGDGVQLD 261

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL----ECEVIVE----TALIDMYAKCNLV 364
            +TI ++L ACS L  L  GR +H + I        E E +       AL+DMYAKC  +
Sbjct: 262 LVTITTILPACSHLAALVHGREIHGYMIVNGFVKDGESENMYNLQTINALMDMYAKCGSM 321

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
           + +  VF   S + T  WN ++ G   +G   +A+ +F  M    ++PN+ T   +L A 
Sbjct: 322 RDAGMVFYNMSNRDTASWNIMIMGYGMHGYGNEALYMFSDMCKSGLKPNEITFVGVLLAC 381

Query: 425 AILADLQQAMNIHCYL-IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
           +    + Q +     + +++G +  ++  T +ID+  + G LE A+K+   +PI+  + V
Sbjct: 382 SHAGFISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAGQLEEAYKLAVTMPIQ-TNPV 440

Query: 484 VWSVIIAGYGMHGHGETA 501
           VW  ++A   ++G+ + A
Sbjct: 441 VWRALLAACQLYGNVDLA 458



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 121/401 (30%), Positives = 196/401 (48%), Gaps = 24/401 (5%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH--- 59
           P  +T P        L++       +   K++H  +   G  L  ++ SSLV +Y     
Sbjct: 58  PDKYTFPC-------LIKGLCEVMEVFQVKKIHGLVRKLGLDLDMYVGSSLVSSYLKSEL 110

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           +   R LFDE+ +R   L+N+++  YAQ G   ++L +   M + G      +T   V+ 
Sbjct: 111 MKEARELFDEIPDRDVVLWNSMVNGYAQIGRFDEALGVCREMSQEGVL-MSKFTVSGVLS 169

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
                     G  +HG ++  GFD    V N LI MY     V  A ++F+ M E  + S
Sbjct: 170 VFAGRGDFDNGRLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALEIFETMNEKDIFS 229

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE-LV 238
           WN+++S     +     L +FD ML  GV+ D  ++ ++LPAC +L  +  GR IH  ++
Sbjct: 230 WNSILSANELCSDHDGTLRLFDRMLGDGVQLDLVTITTILPACSHLAALVHGREIHGYMI 289

Query: 239 AGGRLGK-------NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
             G +         N+   NAL+DMY KCGS+ +A +VF  MS RD  +W  MI GY ++
Sbjct: 290 VNGFVKDGESENMYNLQTINALMDMYAKCGSMRDAGMVFYNMSNRDTASWNIMIMGYGMH 349

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG-RSLHAWTIKQNLECEVIV 350
           G    AL +F  M   G++PN +T   +L ACS   ++ +G + L    +K  +   +  
Sbjct: 350 GYGNEALYMFSDMCKSGLKPNEITFVGVLLACSHAGFISQGIKFLGEMELKHGVVPTIQH 409

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVP--WNAILAGC 389
            T +IDM  +   ++ ++++ A T   +T P  W A+LA C
Sbjct: 410 YTCVIDMLGRAGQLEEAYKL-AVTMPIQTNPVVWRALLAAC 449


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 188/585 (32%), Positives = 316/585 (54%), Gaps = 43/585 (7%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAM--YMNFGEVKAARKVFDAMWE 174
           +++ C  L   K    +  +++ TG   + F  + L+A        E+    ++   + E
Sbjct: 63  ILERCKSLVQLK---QIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKE 119

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG-VEPDCASVVSVLPAC--GYLKEIEMG 231
            +V SWN  I GY ++   +   +++  ML  G ++PD  +   +L  C   Y   + +G
Sbjct: 120 LNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLG 179

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
            + H L  G     +I   NA + M + CG ++ A  VF++   RD+VTW SMI G    
Sbjct: 180 VLGHVLKFGFEC--DIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKR 237

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G    A+ +++ M+ E VRPN +T+  ++S+CS +  L  G+  H +  +  LE  + + 
Sbjct: 238 GLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLT 297

Query: 352 TALIDMYAKCN-------------------------------LVKLSFQVFARTSKKKTV 380
            AL+DMY KC                                 + ++ ++  +  +K  V
Sbjct: 298 NALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVV 357

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
           PWNAI++GCV     ++A+ LF +M +  +EP+  T+ + L A + L  L   + IH Y+
Sbjct: 358 PWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYI 417

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
            R+     V + T L+D+Y+KCG++  A ++F EIP   ++ + W+ +I G  +HG+ + 
Sbjct: 418 ERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIP--QRNCLTWTAVICGLALHGNAQD 475

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560
           A+S F +M+  G+ P+E+TF   L AC HGGL++EG   F+ M        +  HY+C+V
Sbjct: 476 ALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMV 535

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620
           DLLGRAG L+EA +L++ MP+    AV GAL  AC ++GNV++GE  A  L E++P++ G
Sbjct: 536 DLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSG 595

Query: 621 NYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           NYVLL+ +YS  + WK+A + R +M++KG+ K P  SL+E+  I+
Sbjct: 596 NYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIV 640



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 146/530 (27%), Positives = 258/530 (48%), Gaps = 61/530 (11%)

Query: 12  TTHLVIK---LVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSN------ 62
           TTH  ++   L+      KS+   KQ+ A ++++G +     +S + A+  +S       
Sbjct: 50  TTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDY 109

Query: 63  -VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC 121
             RIL+  + E + F +N  ++ Y ++G       ++  ML  G   PDN+TYP+++K C
Sbjct: 110 CTRILY-RIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGC 168

Query: 122 TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWN 181
                  LG+ + G VL  GF+ D FV N  I M ++ GE+  A  VF+      +V+WN
Sbjct: 169 CGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWN 228

Query: 182 TLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG 241
           ++I+G  K   A EA+ ++  M    V P+  +++ ++ +C  ++++ +G+  H  +   
Sbjct: 229 SMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEH 288

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG--DV----- 294
            L   I   NAL+DMYVKCG +  AR++FD M+++ +V+WT+M+ GYA  G  DV     
Sbjct: 289 GLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREIL 348

Query: 295 ------------------------RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
                                   + AL LF  MQ   + P+ +T+ + LSACS L  L 
Sbjct: 349 YKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALD 408

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
            G  +H +  +  L  +V + TAL+DMYAKC  +  + QVF    ++  + W A++ G  
Sbjct: 409 VGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLA 468

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPA----------YAILADLQQAMNIHCYL 440
            +G A+ A+  F +M+   + P++ T   +L A              +++    N+   L
Sbjct: 469 LHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKL 528

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
             Y         + ++D+  + G LE A ++   +P+     V+ ++  A
Sbjct: 529 KHY---------SCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFA 569


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 186/447 (41%), Positives = 272/447 (60%), Gaps = 7/447 (1%)

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           V+ ACG L +   G+ IH LV       ++    +LV MY + G V +AR +FD M  RD
Sbjct: 3   VVKACGDLLD---GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARD 59

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
             +W +MI+GY  NG+   AL +   M+ EGV+ +++T+ S+L  C+ +  +  G+ +H 
Sbjct: 60  RGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHL 119

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
           + IK  LE E+ V  ALI+MYAK   +  + +VF    K   V WN ++ G   NGLA +
Sbjct: 120 YVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLIKD-VVSWNTLITGYAQNGLASE 178

Query: 398 AVELFRQMLV-EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLI 456
           A+E++  M   E + PN  T  S+LPAY+ +  LQQ M IH  +I+    S V V T LI
Sbjct: 179 AIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLI 238

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
           D+Y KCG L+ A  +F ++P K+   V W+ +I+ YG+HG GE A+ LF+EM    V+P+
Sbjct: 239 DMYGKCGKLDDAISLFYQVPRKNS--VPWNAMISCYGVHGDGEKALELFREMKAERVKPD 296

Query: 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
            +TF S L ACSH GL+ +    FN M E +       HY C+VDL GRAG L+ A++ I
Sbjct: 297 HITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFI 356

Query: 577 RTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWK 636
           + MP++P  + WGALL AC IHGN+ELG+ A++ LFE++ EN G YVLLS +Y+ V +W+
Sbjct: 357 KKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWE 416

Query: 637 DAENVRDVMDEKGLRKAPAHSLIEVRN 663
             ++VR +  ++GLRK P  S I + N
Sbjct: 417 GVDDVRSLARDRGLRKNPGWSSIILNN 443



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 145/389 (37%), Positives = 213/389 (54%), Gaps = 11/389 (2%)

Query: 115 PIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
           P V+KAC DL     G  +H  VL  GF+ D FV   L+ MY  FG V  ARK+FD M  
Sbjct: 1   PPVVKACGDLL---DGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPA 57

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
               SWN +ISGY +N  A EAL + D M   GV+ D  +V SVLP C  + +I  G++I
Sbjct: 58  RDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLI 117

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H  V    L   +   NAL++MY K GS+  A+ VF  +  +DVV+W ++I GYA NG  
Sbjct: 118 HLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLA 176

Query: 295 RNALGLFQLM-QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
             A+ ++ LM + E + PN  T  S+L A S +  L++G  +H   IK  L  +V V T 
Sbjct: 177 SEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTC 236

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           LIDMY KC  +  +  +F +  +K +VPWNA+++    +G   KA+ELFR+M  E V+P+
Sbjct: 237 LIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPD 296

Query: 414 DATLNSLLPAYA---ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
             T  SLL A +   +++D Q   N+      YG    ++    ++D++ + G LE A  
Sbjct: 297 HITFVSLLSACSHSGLVSDAQWCFNM--MEEEYGIKPSLKHYGCMVDLFGRAGELEMAFN 354

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
              ++PI+  D   W  ++    +HG+ E
Sbjct: 355 FIKKMPIQ-PDASAWGALLNACRIHGNIE 382



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 115/373 (30%), Positives = 192/373 (51%), Gaps = 19/373 (5%)

Query: 33  KQLHAFIITSGPLF-THLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           K++H  ++  G  +   + +SLV  Y   G V + R LFD+M  R    +N ++  Y QN
Sbjct: 14  KKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQN 73

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G + ++L +   M RL     D  T   V+  C  +     G  +H  V+  G + + FV
Sbjct: 74  GNAAEALDIADEM-RLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFV 132

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK-SG 207
            N LI MY  FG +  A+KVF  + +  VVSWNTLI+GY +N  A EA+ V+  M +   
Sbjct: 133 SNALINMYAKFGSLGHAQKVFGLLIK-DVVSWNTLITGYAQNGLASEAIEVYLLMEEHEE 191

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           + P+  + VS+LPA  ++  ++ G  IH  V    L  ++     L+DMY KCG +++A 
Sbjct: 192 IIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAI 251

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +F ++  ++ V W +MI+ Y ++GD   AL LF+ M+ E V+P+ +T  SLLSACS   
Sbjct: 252 SLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSG 311

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETAL------IDMYAKCNLVKLSFQVFARTS-KKKTV 380
            +   +    W     +E E  ++ +L      +D++ +   ++++F    +   +    
Sbjct: 312 LVSDAQ----WCFNM-MEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDAS 366

Query: 381 PWNAILAGCVHNG 393
            W A+L  C  +G
Sbjct: 367 AWGALLNACRIHG 379



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 139/280 (49%), Gaps = 11/280 (3%)

Query: 24  AATKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYN 79
           A    I   K +H ++I  G  F   + ++L+  Y   G + + + +F  +  +    +N
Sbjct: 106 AQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWN 164

Query: 80  TVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLI 139
           T++  YAQNG + ++++++L M    E  P+  T+  ++ A + +   + G+ +HG+V+ 
Sbjct: 165 TLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIK 224

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
                D FVG CLI MY   G++  A  +F  +   + V WN +IS Y  +   ++AL +
Sbjct: 225 NCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALEL 284

Query: 200 FDWMLKSGVEPDCASVVSVLPAC---GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
           F  M    V+PD  + VS+L AC   G + + +    + E   G  +  ++  +  +VD+
Sbjct: 285 FREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYG--IKPSLKHYGCMVDL 342

Query: 257 YVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVR 295
           + + G +  A     +M  + D   W +++N   ++G++ 
Sbjct: 343 FGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIE 382


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 203/613 (33%), Positives = 325/613 (53%), Gaps = 51/613 (8%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N  +  Y + G    +L +F GM R         TY  +I     L+  K   A   +V
Sbjct: 63  WNRKISAYMRKGQCESALSVFNGMRR-----RSTVTYNAMISGY--LSNNKFDCAR--KV 113

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
                D D    N +++ Y+  G + AAR +F+ M E  VVSWN ++SG+ +N + +EA 
Sbjct: 114 FEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEAR 173

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
            +FD ML    E     ++S     G    IE  R + +     ++   I +WN L+  Y
Sbjct: 174 KIFDQMLVKN-EISWNGLLSAYVQNG---RIEDARRLFD----SKMDWEIVSWNCLMGGY 225

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV-------- 309
           V+   +++AR +FDRM  RD ++W  MI GYA NG +  A  LF+ +    V        
Sbjct: 226 VRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVS 285

Query: 310 -------------------RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
                                N ++  ++++       +++ R L      +N       
Sbjct: 286 GFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSW--- 342

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
              ++  YA+C  +  +  +F    ++  + W A+++G   +G + +A+ LF +M  +  
Sbjct: 343 -NTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGG 401

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
             N + L   L + A +A L+    +H  L++ GF +       L+ +Y KCGS+E A  
Sbjct: 402 ILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFD 461

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           +F +I   +KDIV W+ +IAGY  HG G+ A++LF+ M  + ++P++VT    L ACSH 
Sbjct: 462 VFEDIT--EKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHT 518

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           GL+D+G++ FN M +N+   + A HYTC++DLLGRAGRLDEA +L+++MP  P  A WGA
Sbjct: 519 GLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGA 578

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LLGA  IHG+ ELGE AA+ +FE+EP+N G YVLLS LY+A  RW++   +R  M +KG+
Sbjct: 579 LLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGV 638

Query: 651 RKAPAHSLIEVRN 663
           +K P +S +E++N
Sbjct: 639 KKVPGYSWVEIQN 651


>gi|297741017|emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 198/591 (33%), Positives = 318/591 (53%), Gaps = 26/591 (4%)

Query: 80  TVMKMYAQNGASHDSLKMFLGMLRL--GEYNPDNYTYPI--VIKACTDLAWRKLGIALHG 135
           T +K +   G   D+ K  + ++RL     + D   +PI  ++ +CTD+     G  LHG
Sbjct: 66  TSLKEFTSRGNLLDAFKT-VSLIRLHASSASQDLIVHPISSLLSSCTDVKSLAEGRQLHG 124

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
            ++  GF+    +   L+  Y  F  +  A  + +         WN LIS Y +N + ++
Sbjct: 125 HIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLISSYVRNGFCQK 184

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           AL  +  M+K G+ PD  +  SVL ACG   ++  G+ +HE +            NA   
Sbjct: 185 ALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESI------------NA--S 230

Query: 256 MYVKCGSVNEARLVFDRMSERDV----VTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           +Y   G  NEA  +F  M   D+    + W ++  GY   G+ + AL L   M+  G   
Sbjct: 231 LYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHL 290

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +S+ +   L ACS +   K G+ +H++ I+        V+ ALI MY++C  +K ++ +F
Sbjct: 291 DSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLF 350

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
                K  + WN+I++GC H   + +A  L R+ML+  +EPN  T+ S+LP  A +A+LQ
Sbjct: 351 QLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQ 410

Query: 432 QAMNIHCYLIRY-GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
                HCY+ R   F   + +   L+D+Y++ G +  A ++F  +  +DK  + ++ +IA
Sbjct: 411 HGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDK--MTYTSMIA 468

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           GYGM G G+ A+ LF+EM    ++P+ +T  + L ACSH GL+ +G  LF  M   +   
Sbjct: 469 GYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLT 528

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
              +H+ C+ DL GRAG L++A ++IR MP KPT A+W  L+GAC IH N E+GE AA+ 
Sbjct: 529 PHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEK 588

Query: 611 LFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           L E++PENPG YVL++ +Y+A   W     VR  M + G+RKAP  + ++V
Sbjct: 589 LLEMKPENPGYYVLIANMYAAAGCWNKLAKVRIFMRDLGVRKAPGCAWVDV 639



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 130/508 (25%), Positives = 240/508 (47%), Gaps = 29/508 (5%)

Query: 14  HLVIKLVQQYAATKSIAGTKQLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDE 69
           H +  L+      KS+A  +QLH  II+ G    P+      +   A+  + +  ++ + 
Sbjct: 101 HPISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITEN 160

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
            +    F +N ++  Y +NG    +L  +  M++ G   PDN+TYP V+KAC        
Sbjct: 161 SNILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKG-IRPDNFTYPSVLKAC-------- 211

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW----EHSVVSWNTLIS 185
                G  L  GF  +    +   ++Y + G    A ++F +MW    E +++ WNT+  
Sbjct: 212 -----GEELDLGFGKEVH-ESINASLYASMGMWNEAFELFGSMWAEDIELNIIIWNTIAG 265

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           GY +    K AL +   M K G   D  +++  L AC ++ + ++G+ IH        G+
Sbjct: 266 GYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEIHSFAIRSCFGE 325

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
                NAL+ MY +C  +  A L+F  M  + ++TW S+I+G         A  L + M 
Sbjct: 326 VDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREML 385

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW-TIKQNLECEVIVETALIDMYAKCNLV 364
             G+ PN +TI S+L  C+ +  L+ G+  H + T +++ +  +++  AL+DMYA+   V
Sbjct: 386 LFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKV 445

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
             + +VF    ++  + + +++AG    G  + A++LF +M    ++P+  T+ ++L A 
Sbjct: 446 LEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSAC 505

Query: 425 AILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
           +    + Q   +   +   YG    +E    + D++ + G L  A +I   +P K     
Sbjct: 506 SHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTP-A 564

Query: 484 VWSVIIAGYGMHGH---GETAVSLFKEM 508
           +W+ +I    +H +   GE A     EM
Sbjct: 565 MWATLIGACRIHRNTEIGEWAAEKLLEM 592


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 186/493 (37%), Positives = 286/493 (58%), Gaps = 13/493 (2%)

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
           ++VSW+ +I G+ +N Y KEAL +   M  +G EP+  ++ SVLPAC  L+ + +G+ IH
Sbjct: 10  NLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEIH 69

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
             V       N    N LVD+Y +C  +  A  +F   S ++VV++ +MI GY  NG+V 
Sbjct: 70  GYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENGNVE 129

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN--LECEVIVETA 353
            A  LF  M+  G   ++++  S++S  +    L +   L A  +  +   E +      
Sbjct: 130 KAKELFDQMELVG--KDTISWNSMISGYAD--NLLKCEDLKAAQLAFDGVTERDTATWNV 185

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVP----WNAILAGCVHNGLARKAVELFRQMLVEV 409
           LI  YA CN ++    +  +       P    WN I++G V NG    A+ LF +M    
Sbjct: 186 LISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSS 245

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469
           + P+  T+  +LPA A LA + +   +H + IR G+   V +   L+D+Y+KCGS++ A 
Sbjct: 246 LRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAM 305

Query: 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529
           ++++ I   + ++V  + ++  Y MHGHG+  ++LF+ M+ +G +P+ VTF S L +C H
Sbjct: 306 QVYNRI--SNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVH 363

Query: 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
            G ++ G + F+ M   + T S   HYTCIVDLL RAGRLDEAY+L++ +P KP   +WG
Sbjct: 364 AGAVETGHEFFDLMTYYNVTPS-LKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWG 422

Query: 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
           ALLG CVI GNVELGE+AA+ L ELEP N GNYVLL+ LY+   RW D +  R ++ ++G
Sbjct: 423 ALLGGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRG 482

Query: 650 LRKAPAHSLIEVR 662
           + K+P  S IE R
Sbjct: 483 MHKSPGCSWIEDR 495



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 134/456 (29%), Positives = 226/456 (49%), Gaps = 14/456 (3%)

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
           E S+ +   ++ V+  +AQNG   ++L++   M   G + P+  T   V+ AC  L    
Sbjct: 5   ENSKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAG-FEPNARTLASVLPACARLQNLN 63

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
           LG  +HG V   GF  + FV N L+ +Y    ++ +A K+F      +VVS+NT+I GY 
Sbjct: 64  LGKEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYC 123

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH--ELVAGGRLGKN 246
           +N   ++A  +FD M   G   D  S  S++   GY   +     +   +L   G   ++
Sbjct: 124 ENGNVEKAKELFDQMELVG--KDTISWNSMIS--GYADNLLKCEDLKAAQLAFDGVTERD 179

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMS----ERDVVTWTSMINGYALNGDVRNALGLFQ 302
            A WN L+  Y  C  +   + +  +M     E +V TW  +I+G+  NG    AL LF 
Sbjct: 180 TATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFT 239

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            MQ   +RP+  T+G +L AC+ L  + RG+ +HA +I+Q  E +V +  AL+DMYAKC 
Sbjct: 240 EMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCG 299

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            +K + QV+ R S    V  NA+L     +G   + + LFR ML     P+  T  S+L 
Sbjct: 300 SIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLS 359

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           +      ++        +  Y     ++  T ++D+ S+ G L+ A+++  +IP K  D 
Sbjct: 360 SCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRK-PDS 418

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           V+W  ++ G  + G+ E      + +++  ++PN  
Sbjct: 419 VMWGALLGGCVIWGNVELGEIAAESLIE--LEPNNT 452



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 206/438 (47%), Gaps = 31/438 (7%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNV 63
           P+  TL        +L Q     K I G    H F+  S P   +    + R    + + 
Sbjct: 44  PNARTLASVLPACARL-QNLNLGKEIHGYVTRHGFM--SNPFVVNGLVDVYRRCADMGSA 100

Query: 64  RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGE----YNPDNYTYPIVIK 119
             +F   S ++   YNT++  Y +NG    + ++F  M  +G+    +N     Y   + 
Sbjct: 101 LKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLL 160

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM----WEH 175
            C DL   +L  A  G       + DT   N LI+ Y    +++  + +   M    +E 
Sbjct: 161 KCEDLKAAQL--AFDGVT-----ERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEP 213

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI- 234
           +V +WN +ISG+ +N + + AL +F  M  S + PD  +V  +LPAC  L  I  G+ + 
Sbjct: 214 NVYTWNGIISGHVENGHNELALRLFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVH 273

Query: 235 -HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
            H +  G  L  +I A  ALVDMY KCGS+  A  V++R+S  ++V+  +M+  YA++G 
Sbjct: 274 AHSIRQGYELDVHIGA--ALVDMYAKCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGH 331

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
               + LF+ M   G RP+ +T  S+LS+C     ++ G          N+   +   T 
Sbjct: 332 GDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTC 391

Query: 354 LIDMYAKCNLVKLSFQVFARTSKK-KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
           ++D+ ++   +  ++++  +  +K  +V W A+L GCV  G      E+  + L+E +EP
Sbjct: 392 IVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALLGGCVIWGNVELG-EIAAESLIE-LEP 449

Query: 413 NDATLNSLLPAYAILADL 430
           N+         Y +LA+L
Sbjct: 450 NNTG------NYVLLANL 461



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 169/374 (45%), Gaps = 53/374 (14%)

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
           S+ ++V+W+++I G+A NG  + AL L   MQ  G  PN+ T+ S+L AC+ L  L  G+
Sbjct: 7   SKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGK 66

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            +H +  +        V   L+D+Y +C  +  + ++F+  S K  V +N ++ G   NG
Sbjct: 67  EIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVKNVVSYNTMIVGYCENG 126

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYA----ILADLQQAMNIHCYLIRYGFLSVV 449
              KA ELF QM  E+V  +  + NS++  YA       DL+ A        +  F  V 
Sbjct: 127 NVEKAKELFDQM--ELVGKDTISWNSMISGYADNLLKCEDLKAA--------QLAFDGVT 176

Query: 450 EVSTG----LIDIYSKCGSLESAHKIFSEIPIK--DKDIVVWSVIIAGYGMHGHGETAVS 503
           E  T     LI  Y+ C  LE+   +  ++     + ++  W+ II+G+  +GH E A+ 
Sbjct: 177 ERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALR 236

Query: 504 LFKEMVQSGVQPNEVTFTSALHACS-----------HGGLLDEGLDL----FNFMLENHQ 548
           LF EM  S ++P+  T    L AC+           H   + +G +L       +++ + 
Sbjct: 237 LFTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYA 296

Query: 549 TCSRADHYTCIVDLLGRA---------------GRLDEAYDLIRTM---PLKPTHAVWGA 590
            C    H   + + +                  G  DE   L R M     +P H  + +
Sbjct: 297 KCGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLS 356

Query: 591 LLGACVIHGNVELG 604
           +L +CV  G VE G
Sbjct: 357 VLSSCVHAGAVETG 370



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 74/237 (31%), Positives = 118/237 (49%), Gaps = 12/237 (5%)

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
           +  SK   V W+A++ G   NG  ++A+EL  +M     EPN  TL S+LPA A L +L 
Sbjct: 4   SENSKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLN 63

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               IH Y+ R+GF+S   V  GL+D+Y +C  + SA KIFS   +  K++V ++ +I G
Sbjct: 64  LGKEIHGYVTRHGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSV--KNVVSYNTMIVG 121

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           Y  +G+ E A  LF +M   G   + +++ S +   +   L  E L       +     +
Sbjct: 122 YCENGNVEKAKELFDQMELVG--KDTISWNSMISGYADNLLKCEDLKAAQLAFDG---VT 176

Query: 552 RADHYTCIVDLLGRA--GRLDEAYDLIRTMP---LKPTHAVWGALLGACVIHGNVEL 603
             D  T  V + G A   +L+   +LI+ M     +P    W  ++   V +G+ EL
Sbjct: 177 ERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNEL 233


>gi|242037437|ref|XP_002466113.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
 gi|241919967|gb|EER93111.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
          Length = 693

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 199/607 (32%), Positives = 302/607 (49%), Gaps = 10/607 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG-EYNPDNYTYPI 116
           G +S+   LFD M  ++   + T +    +NG    +  MF  ML  G   N       +
Sbjct: 56  GRLSDALDLFDRMPRKNVVAWTTAISGCTRNGQPEAAAAMFADMLESGVAANDFACNAAL 115

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
              A        LG  +H   +  GF  D ++G+CLI +Y   G + AA +VF  M    
Sbjct: 116 AACAAAGAGALSLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSMWAAEEVFRRMEAPD 175

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           VV + +L+S   +N     A+ V   M++ G++P+  ++ S+L  C  +    +G  IH 
Sbjct: 176 VVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSMLAECPRM----IGEQIHG 231

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            +      +++ A  AL+D Y + G  + A  VF+ +  ++VV+W SM+     +G + +
Sbjct: 232 YMLKVMGSQSVYASTALIDFYSRYGDFDMAETVFENLDSKNVVSWCSMMQLCIRDGRLED 291

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           AL +F  M  E V PN       L AC S+     GR +H   IK NL  ++ V  AL+ 
Sbjct: 292 ALRVFSEMISEAVEPNEFAFSIALGACGSVCL---GRQIHCSAIKCNLMTDIRVSNALLS 348

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY +   V     V  +      V W A ++    NG + KAV L  QM  E   PND  
Sbjct: 349 MYGRSGFVSEVEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYA 408

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
            +S L + A LA L Q   +HC  ++ G    V     LI++YSKCG + SA   F  + 
Sbjct: 409 FSSGLSSCADLALLDQGRQLHCLALKLGCDFKVCTGNALINMYSKCGQIGSARLAFDVMN 468

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           + D  ++ W+ +I G   HG     +  F EM  SG QP++ TF + L  C+H GL+ EG
Sbjct: 469 LHD--VMSWNSLIHGLAQHGAANLVLEAFSEMCSSGWQPDDSTFIAVLVGCNHAGLVKEG 526

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
              F  M + +       HY C++D+LGR GR DEA  +I+ MP +P   +W  LL +C 
Sbjct: 527 ETFFRLMTDRYGLTPTPSHYACMIDMLGRNGRFDEALHMIKNMPFEPDVLIWKTLLASCK 586

Query: 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656
           +H N+++G++A   L EL   +  +YVL+S LY+    W+DAE VR  MDE G++K    
Sbjct: 587 LHKNLDIGKLATDKLMELSERDSASYVLMSNLYAMHEEWQDAERVRRRMDEIGVKKDAGW 646

Query: 657 SLIEVRN 663
           S IEV+N
Sbjct: 647 SWIEVKN 653



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 217/454 (47%), Gaps = 23/454 (5%)

Query: 157 MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD--CAS 214
           M  G +  A  +FD M   +VV+W T ISG  +N   + A  +F  ML+SGV  +    +
Sbjct: 53  MKSGRLSDALDLFDRMPRKNVVAWTTAISGCTRNGQPEAAAAMFADMLESGVAANDFACN 112

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW--NALVDMYVKCGSVNEARLVFDR 272
                 A      + +G  +H L    R G    AW  + L+++Y +CGS+  A  VF R
Sbjct: 113 AALAACAAAGAGALSLGEQVHSLAV--RAGFAADAWIGSCLIELYSRCGSMWAAEEVFRR 170

Query: 273 MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
           M   DVV +TS+++    NGD+  A+ +   M  +G++PN  T+ S+L+ C  +     G
Sbjct: 171 MEAPDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSMLAECPRMI----G 226

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
             +H + +K      V   TALID Y++     ++  VF     K  V W +++  C+ +
Sbjct: 227 EQIHGYMLKVMGSQSVYASTALIDFYSRYGDFDMAETVFENLDSKNVVSWCSMMQLCIRD 286

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
           G    A+ +F +M+ E VEPN+   +  L A   +   +Q   IHC  I+   ++ + VS
Sbjct: 287 GRLEDALRVFSEMISEAVEPNEFAFSIALGACGSVCLGRQ---IHCSAIKCNLMTDIRVS 343

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
             L+ +Y + G +     +  +  I++ D+V W+  I+    +G  E AV+L  +M   G
Sbjct: 344 NALLSMYGRSGFVSEVEAVLGK--IENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEG 401

Query: 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE---NHQTCSRADHYTCIVDLLGRAGRL 569
             PN+  F+S L +C+   LLD+G  L    L+   + + C+       ++++  + G++
Sbjct: 402 FTPNDYAFSSGLSSCADLALLDQGRQLHCLALKLGCDFKVCTG----NALINMYSKCGQI 457

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVEL 603
             A      M L    + W +L+     HG   L
Sbjct: 458 GSARLAFDVMNLHDVMS-WNSLIHGLAQHGAANL 490



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 181/382 (47%), Gaps = 20/382 (5%)

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           +D  +K G +++A  +FDRM  ++VV WT+ I+G   NG    A  +F  M   GV  N 
Sbjct: 49  LDALMKSGRLSDALDLFDRMPRKNVVAWTTAISGCTRNGQPEAAAAMFADMLESGVAAND 108

Query: 314 LTIGSLLSACSSLYYLKR--GRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
               + L+AC++        G  +H+  ++     +  + + LI++Y++C  +  + +VF
Sbjct: 109 FACNAALAACAAAGAGALSLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSMWAAEEVF 168

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
            R      V + ++++    NG   +AVE+  QM+ + ++PN+ T+ S+L     +   Q
Sbjct: 169 RRMEAPDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSMLAECPRMIGEQ 228

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               IH Y+++      V  ST LID YS+ G  + A  +F    +  K++V W  ++  
Sbjct: 229 ----IHGYMLKVMGSQSVYASTALIDFYSRYGDFDMAETVFEN--LDSKNVVSWCSMMQL 282

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE-NHQTC 550
               G  E A+ +F EM+   V+PNE  F+ AL AC   G +  G  +    ++ N  T 
Sbjct: 283 CIRDGRLEDALRVFSEMISEAVEPNEFAFSIALGAC---GSVCLGRQIHCSAIKCNLMTD 339

Query: 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610
            R  +   ++ + GR+G + E   ++  +   P    W A + A   +G     E A   
Sbjct: 340 IRVSN--ALLSMYGRSGFVSEVEAVLGKIE-NPDLVSWTAAISANFQNG---FSEKAVAL 393

Query: 611 LFELEPE--NPGNYVLLSKLYS 630
           L ++  E   P +Y   S L S
Sbjct: 394 LLQMHSEGFTPNDYAFSSGLSS 415



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 184/412 (44%), Gaps = 13/412 (3%)

Query: 33  KQLHAFII-TSGPLFTHLRSSLV---RAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+H +++   G    +  ++L+     YG       +F+ +  ++   + ++M++  ++
Sbjct: 227 EQIHGYMLKVMGSQSVYASTALIDFYSRYGDFDMAETVFENLDSKNVVSWCSMMQLCIRD 286

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   D+L++F  M+      P+ + + I + AC  +    LG  +H   +      D  V
Sbjct: 287 GRLEDALRVFSEMISEA-VEPNEFAFSIALGACGSVC---LGRQIHCSAIKCNLMTDIRV 342

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L++MY   G V     V   +    +VSW   IS  F+N ++++A+ +   M   G 
Sbjct: 343 SNALLSMYGRSGFVSEVEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGF 402

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P+  +  S L +C  L  ++ GR +H L         +   NAL++MY KCG +  ARL
Sbjct: 403 TPNDYAFSSGLSSCADLALLDQGRQLHCLALKLGCDFKVCTGNALINMYSKCGQIGSARL 462

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
            FD M+  DV++W S+I+G A +G     L  F  M   G +P+  T  ++L  C+    
Sbjct: 463 AFDVMNLHDVMSWNSLIHGLAQHGAANLVLEAFSEMCSSGWQPDDSTFIAVLVGCNHAGL 522

Query: 329 LKRGRS-LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAIL 386
           +K G +     T +  L         +IDM  +      +  +      +   + W  +L
Sbjct: 523 VKEGETFFRLMTDRYGLTPTPSHYACMIDMLGRNGRFDEALHMIKNMPFEPDVLIWKTLL 582

Query: 387 AGC-VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
           A C +H  L     +L    L+E+ E + A+   +   YA+  + Q A  + 
Sbjct: 583 ASCKLHKNL--DIGKLATDKLMELSERDSASYVLMSNLYAMHEEWQDAERVR 632



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 122/258 (47%), Gaps = 10/258 (3%)

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
           +V+++   +D   K   +  +  +F R  +K  V W   ++GC  NG    A  +F  ML
Sbjct: 41  DVVLDCKRLDALMKSGRLSDALDLFDRMPRKNVVAWTTAISGCTRNGQPEAAAAMFADML 100

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAM--NIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
              V  ND   N+ L A A       ++   +H   +R GF +   + + LI++YS+CGS
Sbjct: 101 ESGVAANDFACNAALAACAAAGAGALSLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGS 160

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           + +A ++F    ++  D+V ++ +++    +G    AV +  +M++ G+QPNE T TS L
Sbjct: 161 MWAAEEVFRR--MEAPDVVGYTSLVSALCRNGDLARAVEVLCQMMRQGLQPNEHTMTSML 218

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
             C    ++ E +  +   +   Q+   +   T ++D   R G  D A  +   +  K  
Sbjct: 219 AECPR--MIGEQIHGYMLKVMGSQSVYAS---TALIDFYSRYGDFDMAETVFENLDSKNV 273

Query: 585 HAVWGALLGACVIHGNVE 602
              W +++  C+  G +E
Sbjct: 274 -VSWCSMMQLCIRDGRLE 290


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 180/458 (39%), Positives = 271/458 (59%), Gaps = 3/458 (0%)

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           P  ++  S+L +C   K I+ G+ +H  V     G +      LV++Y  C S++ ARL+
Sbjct: 73  PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           FDR+ + ++  W  +I GYA NG    A+ L+  M   G+ P++ T   +L AC++L  +
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAI 192

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           + GR +H   ++   E +V V  ALIDMYAKC  V  + +VF +   +  V WN++LA  
Sbjct: 193 EHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAY 252

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
             NG     + L  +M++  + P +ATL + + A A  A L Q   +H    R  F S  
Sbjct: 253 SQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHD 312

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
           +V T L+D+Y+KCGS+  A  +F  + +K   +V W+ +I GY MHGH   A+ LF+EM 
Sbjct: 313 KVKTALVDMYAKCGSVRVARNLFERLGVKR--VVSWNAMITGYAMHGHATEALDLFEEMN 370

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           +   +P+ +TF   L ACSHGGLL+EG   F  M+ +++      HYTC+VDLLG +GRL
Sbjct: 371 RVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRL 429

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629
           DEAY+LI  M + P   VWGALL +C IH NVELGE+A + L ELEP++ GNYV+LS +Y
Sbjct: 430 DEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIY 489

Query: 630 SAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
           +   +W+    +R +M ++ L+K+ A S IEV+N + A
Sbjct: 490 AQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHA 527



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 130/411 (31%), Positives = 210/411 (51%), Gaps = 5/411 (1%)

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            P    Y  ++++C      K G  LH +V + GF  DT +   L+ +Y     + +AR 
Sbjct: 72  TPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARL 131

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +FD + +H++  WN LI GY  N   + A+ ++  M   G+ PD  +   VL AC  L  
Sbjct: 132 LFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSA 191

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           IE GR IHE V      K++    AL+DMY KCG V  AR VFD++  RD V W SM+  
Sbjct: 192 IEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAA 251

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           Y+ NG     L L   M   G+RP   T+ + +SA +    L +GR LH  + +Q  E  
Sbjct: 252 YSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESH 311

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
             V+TAL+DMYAKC  V+++  +F R   K+ V WNA++ G   +G A +A++LF +M  
Sbjct: 312 DKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM-N 370

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLE 466
            V +P+  T   +L A +    L++       +IR Y     V+  T ++D+    G L+
Sbjct: 371 RVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLD 430

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
            A+ +  ++ +   D  VW  ++    +H + E      + +++  ++P++
Sbjct: 431 EAYNLIMQMKVL-PDSGVWGALLNSCKIHANVELGEIALERLIE--LEPDD 478



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 133/407 (32%), Positives = 216/407 (53%), Gaps = 18/407 (4%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLF-THLRSSLVRAY---GHVSNVRILFDEMSERS 74
           L+Q   A K+I   KQLHA +  +G  F T + + LV  Y     +S+ R+LFD + + +
Sbjct: 81  LLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHN 140

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
            FL+N +++ YA NG    +++++  M   G   PDN+T+P V+KAC  L+  + G  +H
Sbjct: 141 IFLWNVLIRGYAWNGPYEAAVQLYYQMFDYG-LVPDNFTFPFVLKACAALSAIEHGREIH 199

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
             V+ TG++ D FVG  LI MY   G V +AR+VFD +     V WN++++ Y +N +  
Sbjct: 200 EHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPD 259

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
             L +   M+ +G+ P  A++V+ + A      +  GR +H L        +     ALV
Sbjct: 260 ACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALV 319

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           DMY KCGSV  AR +F+R+  + VV+W +MI GYA++G    AL LF+ M     +P+ +
Sbjct: 320 DMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMN-RVAKPDHI 378

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQ-NLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
           T   +LSACS    L+ G       I+   ++  V   T ++D+      +  ++ +  +
Sbjct: 379 TFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQ 438

Query: 374 TSKKKTVP----WNAILAGC-VHNGLARKAVELFRQMLVEVVEPNDA 415
               K +P    W A+L  C +H  +    + L R  L+E +EP+DA
Sbjct: 439 M---KVLPDSGVWGALLNSCKIHANVELGEIALER--LIE-LEPDDA 479


>gi|223635626|sp|O65543.2|PP343_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31070, mitochondrial; Flags: Precursor
          Length = 624

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 198/557 (35%), Positives = 310/557 (55%), Gaps = 20/557 (3%)

Query: 115 PIVIKACTDLAWRK----LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD 170
           P VIKAC   A+++    LG  LH   L  G D DT V N LI+MY  F    A RKVFD
Sbjct: 61  PSVIKAC---AFQQEPFLLGAQLHCLCLKAGADCDTVVSNSLISMYAKFSRKYAVRKVFD 117

Query: 171 AMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL-KEIE 229
            M     VS+ ++I+   ++    EA+ +   M   G  P    V S+L  C  +    +
Sbjct: 118 EMLHRDTVSYCSIINSCCQDGLLYEAMKLIKEMYFYGFIPKSELVASLLALCTRMGSSSK 177

Query: 230 MGRMIHELV-AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
           + RM H LV    R+ +++    ALVDMY+K      A  VFD+M  ++ V+WT+MI+G 
Sbjct: 178 VARMFHALVLVDERMQESVLLSTALVDMYLKFDDHAAAFHVFDQMEVKNEVSWTAMISGC 237

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL----HAWTIKQNL 344
             N +    + LF+ MQ E +RPN +T+ S+L AC  L Y   G SL    H ++ +   
Sbjct: 238 VANQNYEMGVDLFRAMQRENLRPNRVTLLSVLPACVELNY---GSSLVKEIHGFSFRHGC 294

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
             +  +  A + MY +C  V LS  +F  +  +  V W+++++G    G   + + L  Q
Sbjct: 295 HADERLTAAFMTMYCRCGNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQ 354

Query: 405 MLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464
           M  E +E N  TL +++ A      L  A  +H  +++ GF+S + +   LID+Y+KCGS
Sbjct: 355 MRKEGIEANSVTLLAIVSACTNSTLLSFASTVHSQILKCGFMSHILLGNALIDMYAKCGS 414

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           L +A ++F E+   +KD+V WS +I  YG+HGHG  A+ +FK M++ G + +++ F + L
Sbjct: 415 LSAAREVFYELT--EKDLVSWSSMINAYGLHGHGSEALEIFKGMIKGGHEVDDMAFLAIL 472

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            AC+H GL++E   +F    + H   +  +HY C ++LLGR G++D+A+++   MP+KP+
Sbjct: 473 SACNHAGLVEEAQTIFTQAGKYHMPVT-LEHYACYINLLGRFGKIDDAFEVTINMPMKPS 531

Query: 585 HAVWGALLGACVIHGNVEL-GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643
             +W +LL AC  HG +++ G++ A  L + EP+NP NYVLLSK+++    +  AE VR 
Sbjct: 532 ARIWSSLLSACETHGRLDVAGKIIANELMKSEPDNPANYVLLSKIHTESGNYHAAEEVRR 591

Query: 644 VMDEKGLRKAPAHSLIE 660
           VM  + L K    S IE
Sbjct: 592 VMQRRKLNKCYGFSKIE 608



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 133/481 (27%), Positives = 237/481 (49%), Gaps = 21/481 (4%)

Query: 34  QLHAFIITSGP-LFTHLRSSLVRAYGHVSN---VRILFDEMSERSSFLYNTVMKMYAQNG 89
           QLH   + +G    T + +SL+  Y   S    VR +FDEM  R +  Y +++    Q+G
Sbjct: 79  QLHCLCLKAGADCDTVVSNSLISMYAKFSRKYAVRKVFDEMLHRDTVSYCSIINSCCQDG 138

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDL-AWRKLGIALHGRVLITG-FDMDTF 147
             ++++K+   M   G + P +     ++  CT + +  K+    H  VL+         
Sbjct: 139 LLYEAMKLIKEMYFYG-FIPKSELVASLLALCTRMGSSSKVARMFHALVLVDERMQESVL 197

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           +   L+ MY+ F +  AA  VFD M   + VSW  +ISG   N   +  + +F  M +  
Sbjct: 198 LSTALVDMYLKFDDHAAAFHVFDQMEVKNEVSWTAMISGCVANQNYEMGVDLFRAMQREN 257

Query: 208 VEPDCASVVSVLPAC-------GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           + P+  +++SVLPAC         +KEI      H   A  RL        A + MY +C
Sbjct: 258 LRPNRVTLLSVLPACVELNYGSSLVKEIHGFSFRHGCHADERLTA------AFMTMYCRC 311

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           G+V+ +R++F+    RDVV W+SMI+GYA  GD    + L   M+ EG+  NS+T+ +++
Sbjct: 312 GNVSLSRVLFETSKVRDVVMWSSMISGYAETGDCSEVMNLLNQMRKEGIEANSVTLLAIV 371

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           SAC++   L    ++H+  +K      +++  ALIDMYAKC  +  + +VF   ++K  V
Sbjct: 372 SACTNSTLLSFASTVHSQILKCGFMSHILLGNALIDMYAKCGSLSAAREVFYELTEKDLV 431

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            W++++     +G   +A+E+F+ M+    E +D    ++L A      +++A  I    
Sbjct: 432 SWSSMINAYGLHGHGSEALEIFKGMIKGGHEVDDMAFLAILSACNHAGLVEEAQTIFTQA 491

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
            +Y     +E     I++  + G ++ A ++   +P+K     +WS +++    HG  + 
Sbjct: 492 GKYHMPVTLEHYACYINLLGRFGKIDDAFEVTINMPMK-PSARIWSSLLSACETHGRLDV 550

Query: 501 A 501
           A
Sbjct: 551 A 551


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 186/574 (32%), Positives = 311/574 (54%), Gaps = 39/574 (6%)

Query: 125 AWRKLG-IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
           A+ K G +A   RV     D + F  N L++   +   V    ++F +M E   VS+N L
Sbjct: 57  AYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNAL 116

Query: 184 ISGYFKNAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           I+G+        ++ ++  +L+   V P   ++ +++     L +  +G  +H  V   R
Sbjct: 117 ITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVL--R 174

Query: 243 LGKNIAAW--NALVDMYVKCGSVNEARLVFDRMS-------------------------- 274
           LG    A+  + LVDMY K G + +AR VF  M                           
Sbjct: 175 LGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGL 234

Query: 275 -----ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
                +RD +TWT+M+ G   NG    AL +F+ M+ EGV  +  T GS+L+AC +L  L
Sbjct: 235 FQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAAL 294

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           + G+ +HA+  +   E  V V +AL+DMY+KC  ++L+  VF R + +  + W A++ G 
Sbjct: 295 EEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGY 354

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
             N  + +AV  F +M ++ ++P+D TL S++ + A LA L++    HC  +  G +  +
Sbjct: 355 GQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYI 414

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            VS  L+ +Y KCGS+E AH++F E+   D+  V W+ ++ GY   G  +  + LF++M+
Sbjct: 415 TVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ--VSWTALVTGYAQFGKAKETIDLFEKML 472

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
            +G++P+ VTF   L ACS  GL+++G D F+ M ++H      DHYTC++DL  R+GR 
Sbjct: 473 ANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRF 532

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629
            EA + I+ MP  P    W  LL +C + GN+E+G+ AA+ L E +P+NP +YVLL  ++
Sbjct: 533 KEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMH 592

Query: 630 SAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +A  +W +  ++R  M ++ ++K P  S I+ +N
Sbjct: 593 AAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKN 626



 Score =  238 bits (607), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 156/551 (28%), Positives = 271/551 (49%), Gaps = 42/551 (7%)

Query: 13  THLVIKLVQQYAATKSIAGTKQLHAFIITSGP-LFTHLRSSLVRAYGH---VSNVRILFD 68
           T L+  L+  YA +  +A  +++  F     P LFT  R++L+ A  H   V ++  LF 
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRV--FDEMPDPNLFT--RNALLSALAHSRLVPDMERLFA 103

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
            M ER +  YN ++  ++  G+   S++++  +LR     P   T   +I   + L+ R 
Sbjct: 104 SMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRA 163

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
           LG ++H +VL  GF    FVG+ L+ MY   G ++ AR+VF  M   +VV +NTLI+G  
Sbjct: 164 LGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLL 223

Query: 189 K-------------------------------NAYAKEALVVFDWMLKSGVEPDCASVVS 217
           +                               N    EAL VF  M   GV  D  +  S
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           +L ACG L  +E G+ IH  +       N+   +ALVDMY KC S+  A  VF RM+ R+
Sbjct: 284 ILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRN 343

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
           +++WT+MI GY  N     A+  F  MQ +G++P+  T+GS++S+C++L  L+ G   H 
Sbjct: 344 IISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHC 403

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
             +   L   + V  AL+ +Y KC  ++ + ++F   S    V W A++ G    G A++
Sbjct: 404 LALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKE 463

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLI 456
            ++LF +ML   ++P+  T   +L A +    +++  +    + + +G + + +  T +I
Sbjct: 464 TIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMI 523

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ-P 515
           D+YS+ G  + A +   ++P    D   W+ +++   + G+ E      + ++++  Q P
Sbjct: 524 DLYSRSGRFKEAEEFIKQMP-HSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNP 582

Query: 516 NEVTFTSALHA 526
                  ++HA
Sbjct: 583 ASYVLLCSMHA 593


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 188/585 (32%), Positives = 316/585 (54%), Gaps = 43/585 (7%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAM--YMNFGEVKAARKVFDAMWE 174
           +++ C  L   K    +  +++ TG   + F  + L+A        E+    ++   + E
Sbjct: 63  ILERCKSLVQLK---QIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKE 119

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG-VEPDCASVVSVLPAC--GYLKEIEMG 231
            +V SWN  I GY ++   +   +++  ML  G ++PD  +   +L  C   Y   + +G
Sbjct: 120 LNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLG 179

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
            + H L  G     +I   NA + M + CG ++ A  VF++   RD+VTW SMI G    
Sbjct: 180 VLGHVLKFGFEC--DIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKR 237

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G    A+ +++ M+ E VRPN +T+  ++S+CS +  L  G+  H +  +  LE  + + 
Sbjct: 238 GLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLT 297

Query: 352 TALIDMYAKCN-------------------------------LVKLSFQVFARTSKKKTV 380
            AL+DMY KC                                 + ++ ++  +  +K  V
Sbjct: 298 NALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVV 357

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
           PWNAI++GCV     ++A+ LF +M +  +EP+  T+ + L A + L  L   + IH Y+
Sbjct: 358 PWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYI 417

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
            R+     V + T L+D+Y+KCG++  A ++F EIP   ++ + W+ +I G  +HG+ + 
Sbjct: 418 ERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIP--QRNCLTWTAVICGLALHGNAQD 475

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560
           A+S F +M+  G+ P+E+TF   L AC HGGL++EG   F+ M        +  HY+C+V
Sbjct: 476 ALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMV 535

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620
           DLLGRAG L+EA +L++ MP+    AV GAL  AC ++GNV++GE  A  L E++P++ G
Sbjct: 536 DLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSG 595

Query: 621 NYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           NYVLL+ +YS  + WK+A + R +M++KG+ K P  SL+E+  I+
Sbjct: 596 NYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVEINGIV 640



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 146/530 (27%), Positives = 258/530 (48%), Gaps = 61/530 (11%)

Query: 12  TTHLVIK---LVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSN------ 62
           TTH  ++   L+      KS+   KQ+ A ++++G +     +S + A+  +S       
Sbjct: 50  TTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAFCALSESKELDY 109

Query: 63  -VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC 121
             RIL+  + E + F +N  ++ Y ++G       ++  ML  G   PDN+TYP+++K C
Sbjct: 110 CTRILY-RIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKGC 168

Query: 122 TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWN 181
                  LG+ + G VL  GF+ D FV N  I M ++ GE+  A  VF+      +V+WN
Sbjct: 169 CGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWN 228

Query: 182 TLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG 241
           ++I+G  K   A EA+ ++  M    V P+  +++ ++ +C  ++++ +G+  H  +   
Sbjct: 229 SMITGCVKRGLAIEAIKIYKEMEAEKVRPNEITMIGMISSCSQVQDLNLGKEFHCYIKEH 288

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG--DV----- 294
            L   I   NAL+DMYVKCG +  AR++FD M+++ +V+WT+M+ GYA  G  DV     
Sbjct: 289 GLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREIL 348

Query: 295 ------------------------RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
                                   + AL LF  MQ   + P+ +T+ + LSACS L  L 
Sbjct: 349 YKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALD 408

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
            G  +H +  +  L  +V + TAL+DMYAKC  +  + QVF    ++  + W A++ G  
Sbjct: 409 VGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLA 468

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPA----------YAILADLQQAMNIHCYL 440
            +G A+ A+  F +M+   + P++ T   +L A              +++    N+   L
Sbjct: 469 LHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKL 528

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
             Y         + ++D+  + G LE A ++   +P+     V+ ++  A
Sbjct: 529 KHY---------SCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFA 569


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 181/541 (33%), Positives = 302/541 (55%), Gaps = 35/541 (6%)

Query: 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVS 217
           +F  +  A  VF+ + E + + WNT+I G+  ++    +L ++  M+  G+ P+  +   
Sbjct: 10  HFDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPF 69

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           +L +C   K    G+ IH  V       ++    +L+ MYV+   + +A  VFDR S RD
Sbjct: 70  LLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRD 129

Query: 278 VVTWTSMINGYALNGDVRNA-------------------------------LGLFQLMQF 306
           VV++T++I GYA  GD+R+A                               L LF+ M  
Sbjct: 130 VVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMK 189

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
             VRP+  T  ++LSAC+    ++ GR +H+W      +  + +  ALID+Y+KC  V+ 
Sbjct: 190 MNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVET 249

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           +  +F   S K  + WN ++ G  H  L ++A+ LF++ML     PND T+ S+LPA A 
Sbjct: 250 ACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAH 309

Query: 427 LADLQQAMNIHCYLIRY--GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           L  +     IH Y+ +   G  +   + T LID+Y+KCG +E+AH++F+ +    K +  
Sbjct: 310 LGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM--LHKSLSS 367

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+ +I G+ MHG  + +  LF  M + G++P+++TF   L ACSH G+LD G  +F  M 
Sbjct: 368 WNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMT 427

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
           ++++   + +HY C++DLLG +G   EA ++I TM ++P   +W +LL AC +HGNVEL 
Sbjct: 428 QDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELA 487

Query: 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
           E  A+ L ++EPENP +Y+LLS +Y++  RW+D   +R +++ K ++K P  S IEV ++
Sbjct: 488 ESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSV 547

Query: 665 L 665
           +
Sbjct: 548 V 548



 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 150/484 (30%), Positives = 253/484 (52%), Gaps = 38/484 (7%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F+ + E +  ++NT+++ +A +     SL +++ M+ LG   P++YT+P ++K+C    
Sbjct: 20  VFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLL-PNSYTFPFLLKSCAKSK 78

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYM---------------------------- 157
               G  +HG+VL  GFD+D +V   LI+MY+                            
Sbjct: 79  TFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALIT 138

Query: 158 ---NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
              + G++++A+K+FD +    VVSWN +ISGY +    KEAL +F+ M+K  V PD ++
Sbjct: 139 GYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDEST 198

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
            V+VL AC +   IE+GR +H  V       N+   NAL+D+Y KCG V  A  +F  +S
Sbjct: 199 YVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLS 258

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
            +DV++W ++I GY      + AL LFQ M   G  PN +T+ S+L AC+ L  +  GR 
Sbjct: 259 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRW 318

Query: 335 LHAWTIK--QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           +H +  K  + +     + T+LIDMYAKC  ++ + QVF     K    WNA++ G   +
Sbjct: 319 IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMH 378

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEV 451
           G A  + +LF +M    +EP+D T   LL A +    L    +I   + + Y     +E 
Sbjct: 379 GRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEH 438

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
              +ID+    G  + A ++ + + + + D V+W  ++    MHG+ E A S  + +++ 
Sbjct: 439 YGCMIDLLGHSGLFKEAEEMINTMEM-EPDGVIWCSLLKACKMHGNVELAESFAQNLIK- 496

Query: 512 GVQP 515
            ++P
Sbjct: 497 -IEP 499



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 122/383 (31%), Positives = 199/383 (51%), Gaps = 11/383 (2%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++L+  Y   G + + + LFDE+  +    +N ++  YA+ G   ++L++F  M+++   
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMN-V 192

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PD  TY  V+ AC      +LG  +H  V   GFD +  + N LI +Y   GEV+ A  
Sbjct: 193 RPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACG 252

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F  +    V+SWNTLI GY      KEAL++F  ML+SG  P+  +++SVLPAC +L  
Sbjct: 253 LFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGA 312

Query: 228 IEMGRMIHELVAGGRLGKNIAA--WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           I++GR IH  +     G   A+    +L+DMY KCG +  A  VF+ M  + + +W +MI
Sbjct: 313 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMI 372

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
            G+A++G    +  LF  M+  G+ P+ +T   LLSACS    L  GR +   ++ Q+ +
Sbjct: 373 FGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFR-SMTQDYK 431

Query: 346 CEVIVE--TALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELF 402
               +E    +ID+     L K + ++      +   V W ++L  C  +G    A E F
Sbjct: 432 MTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELA-ESF 490

Query: 403 RQMLVEVVEPNDATLNSLLPAYA 425
            Q L+++   N ++   L   YA
Sbjct: 491 AQNLIKIEPENPSSYILLSNIYA 513


>gi|356518094|ref|XP_003527718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g04860-like [Glycine max]
          Length = 714

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 197/620 (31%), Positives = 341/620 (55%), Gaps = 14/620 (2%)

Query: 46  FTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGML 102
           F ++ ++L+  Y   G  ++ R LF+++       +N ++  Y+Q+G  HD+L++F+ ML
Sbjct: 77  FLYVNTALIDFYMKLGFTTHARQLFEDLPSADVVSWNVLICGYSQHGHPHDALQLFVHML 136

Query: 103 RLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEV 162
           R   + P+  T   ++ +C        G ++H   +  G  +D  + N L +MY    ++
Sbjct: 137 R-ESFRPNQTTIASLLPSCGRRELFLQGRSVHAFGIKAGLGLDPQLSNALTSMYAKCDDL 195

Query: 163 KAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC 222
           +A++ +F  M E +V+SWNT+I  Y +N +  +A++ F  MLK G +P   ++++++ A 
Sbjct: 196 EASQLLFQEMGEKNVISWNTMIGAYGQNGFEDKAVLCFKEMLKEGWQPSPVTMMNLMSAN 255

Query: 223 GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
                  +   +H  +       + +   +LV +Y K G  + A+L+++    +D+++ T
Sbjct: 256 A------VPETVHCYIIKCGFTGDASVVTSLVCLYAKQGFTDMAKLLYECYPTKDLISLT 309

Query: 283 SMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
            +I+ Y+  G+V +A+  F Q ++ + ++P+++ + S+L   S   +   G + H + +K
Sbjct: 310 GIISSYSEKGEVESAVECFIQTLKLD-IKPDAVALISVLHGISDPSHFAIGCAFHGYGLK 368

Query: 342 QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVEL 401
             L  + +V   LI  Y++ + +  +  +F   S+K  + WN++++GCV  G +  A+EL
Sbjct: 369 NGLTNDCLVANGLISFYSRFDEILAALSLFFDRSEKPLITWNSMISGCVQAGKSSDAMEL 428

Query: 402 FRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461
           F QM +   +P+  T+ SLL     L  L+    +H Y++R          T LID+Y+K
Sbjct: 429 FCQMNMCGQKPDAITIASLLSGCCQLGYLRIGETLHGYILRNNVKVEDFTGTALIDMYTK 488

Query: 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521
           CG L+ A KIF  I   D  +V W+ II+GY ++G    A   F ++ + G++P+++TF 
Sbjct: 489 CGRLDYAEKIFYSI--NDPCLVTWNSIISGYSLYGLEHKAFGCFSKLQEQGLEPDKITFL 546

Query: 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581
             L AC+HGGL+  G++ F  M + +       HY CIV LLGRAG   EA ++I  M +
Sbjct: 547 GVLAACTHGGLVYAGMEYFRIMRKEYGLMPTLQHYACIVGLLGRAGLFKEAIEIINNMEI 606

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENV 641
           +P  AVWGALL AC I   V+LGE  AK LF L  +N G YV LS LY+ V RW D   V
Sbjct: 607 RPDSAVWGALLSACWIQQEVKLGECLAKNLFLLNYKNGGFYVSLSNLYAIVGRWDDVARV 666

Query: 642 RDVMDEKGLRKAPAHSLIEV 661
           RD+M + G   +   S+IEV
Sbjct: 667 RDMMRDSGGDGSSGVSVIEV 686



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 138/504 (27%), Positives = 244/504 (48%), Gaps = 25/504 (4%)

Query: 108 NPDNYTYPIVIKAC----------TDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYM 157
           NP++ T+ ++IKAC          +  AW ++   +  ++L  G D   +V   LI  YM
Sbjct: 31  NPNHLTFSLLIKACLSSSSSFSRGSPTAWLQVN-QIQTQLLKRGIDQFLYVNTALIDFYM 89

Query: 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVS 217
             G    AR++F+ +    VVSWN LI GY ++ +  +AL +F  ML+    P+  ++ S
Sbjct: 90  KLGFTTHARQLFEDLPSADVVSWNVLICGYSQHGHPHDALQLFVHMLRESFRPNQTTIAS 149

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           +LP+CG  +    GR +H       LG +    NAL  MY KC  +  ++L+F  M E++
Sbjct: 150 LLPSCGRRELFLQGRSVHAFGIKAGLGLDPQLSNALTSMYAKCDDLEASQLLFQEMGEKN 209

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
           V++W +MI  Y  NG    A+  F+ M  EG +P+ +T+ +L+SA +         ++H 
Sbjct: 210 VISWNTMIGAYGQNGFEDKAVLCFKEMLKEGWQPSPVTMMNLMSANAV------PETVHC 263

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
           + IK     +  V T+L+ +YAK     ++  ++     K  +    I++     G    
Sbjct: 264 YIIKCGFTGDASVVTSLVCLYAKQGFTDMAKLLYECYPTKDLISLTGIISSYSEKGEVES 323

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
           AVE F Q L   ++P+   L S+L   +  +        H Y ++ G  +   V+ GLI 
Sbjct: 324 AVECFIQTLKLDIKPDAVALISVLHGISDPSHFAIGCAFHGYGLKNGLTNDCLVANGLIS 383

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
            YS+   + +A  +F +    +K ++ W+ +I+G    G    A+ LF +M   G +P+ 
Sbjct: 384 FYSRFDEILAALSLFFD--RSEKPLITWNSMISGCVQAGKSSDAMELFCQMNMCGQKPDA 441

Query: 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDL 575
           +T  S L  C   G L  G  L  ++L N+    + + +  T ++D+  + GRLD A  +
Sbjct: 442 ITIASLLSGCCQLGYLRIGETLHGYILRNN---VKVEDFTGTALIDMYTKCGRLDYAEKI 498

Query: 576 IRTMPLKPTHAVWGALLGACVIHG 599
             ++   P    W +++    ++G
Sbjct: 499 FYSIN-DPCLVTWNSIISGYSLYG 521



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 220/465 (47%), Gaps = 15/465 (3%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQN 88
           + +HAF I +G  L   L ++L   Y    ++   ++LF EM E++   +NT++  Y QN
Sbjct: 164 RSVHAFGIKAGLGLDPQLSNALTSMYAKCDDLEASQLLFQEMGEKNVISWNTMIGAYGQN 223

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G    ++  F  ML+ G + P   T   ++ A        +   +H  ++  GF  D  V
Sbjct: 224 GFEDKAVLCFKEMLKEG-WQPSPVTMMNLMSA------NAVPETVHCYIIKCGFTGDASV 276

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
              L+ +Y   G    A+ +++      ++S   +IS Y +    + A+  F   LK  +
Sbjct: 277 VTSLVCLYAKQGFTDMAKLLYECYPTKDLISLTGIISSYSEKGEVESAVECFIQTLKLDI 336

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA-R 267
           +PD  +++SVL          +G   H       L  +    N L+  Y +   +  A  
Sbjct: 337 KPDAVALISVLHGISDPSHFAIGCAFHGYGLKNGLTNDCLVANGLISFYSRFDEILAALS 396

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           L FDR SE+ ++TW SMI+G    G   +A+ LF  M   G +P+++TI SLLS C  L 
Sbjct: 397 LFFDR-SEKPLITWNSMISGCVQAGKSSDAMELFCQMNMCGQKPDAITIASLLSGCCQLG 455

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
           YL+ G +LH + ++ N++ E    TALIDMY KC  +  + ++F   +    V WN+I++
Sbjct: 456 YLRIGETLHGYILRNNVKVEDFTGTALIDMYTKCGRLDYAEKIFYSINDPCLVTWNSIIS 515

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFL 446
           G    GL  KA   F ++  + +EP+  T   +L A      +   M     + + YG +
Sbjct: 516 GYSLYGLEHKAFGCFSKLQEQGLEPDKITFLGVLAACTHGGLVYAGMEYFRIMRKEYGLM 575

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
             ++    ++ +  + G  + A +I + + I+  D  VW  +++ 
Sbjct: 576 PTLQHYACIVGLLGRAGLFKEAIEIINNMEIR-PDSAVWGALLSA 619



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 122/248 (49%), Gaps = 11/248 (4%)

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW--------- 338
           ++L  D  +AL +F+ +      PN LT   L+ AC S        S  AW         
Sbjct: 9   HSLFHDASSALLIFRQLLQSSANPNHLTFSLLIKACLSSSSSFSRGSPTAWLQVNQIQTQ 68

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
            +K+ ++  + V TALID Y K      + Q+F        V WN ++ G   +G    A
Sbjct: 69  LLKRGIDQFLYVNTALIDFYMKLGFTTHARQLFEDLPSADVVSWNVLICGYSQHGHPHDA 128

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDI 458
           ++LF  ML E   PN  T+ SLLP+        Q  ++H + I+ G     ++S  L  +
Sbjct: 129 LQLFVHMLRESFRPNQTTIASLLPSCGRRELFLQGRSVHAFGIKAGLGLDPQLSNALTSM 188

Query: 459 YSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
           Y+KC  LE++  +F E  + +K+++ W+ +I  YG +G  + AV  FKEM++ G QP+ V
Sbjct: 189 YAKCDDLEASQLLFQE--MGEKNVISWNTMIGAYGQNGFEDKAVLCFKEMLKEGWQPSPV 246

Query: 519 TFTSALHA 526
           T  + + A
Sbjct: 247 TMMNLMSA 254


>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 186/558 (33%), Positives = 315/558 (56%), Gaps = 9/558 (1%)

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG-EVKA 164
           E +  +  Y  +++ C  +     G+  H  V+ +G + D  VGN L+++Y   G +++ 
Sbjct: 55  EISAKSNLYASLLQTCRKVFSFIHGLQFHAHVVKSGLETDRNVGNSLLSLYFKLGPDMRE 114

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
            R+VFD M+    +SW +++SGY  +    +AL VF  M+  G++P+  ++ S + AC  
Sbjct: 115 TRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVSFGLQPNKFTLSSAVKACFE 174

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           L E+ +GR  H +V       N    + L  MY       +AR VFD M E DV+ WT++
Sbjct: 175 LGEVRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKEPVDARRVFDEMPEPDVICWTAV 234

Query: 285 INGYALNGDVRNALGLFQLM-QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN 343
           ++ ++ N     ALGLF  M + +G+ P+  T G++L+AC +L  LK+G+ +H   I   
Sbjct: 235 LSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNG 294

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
           +   V+VE++L+DMY K   V+ + QVF    +K  V W+A+L G   NG   KA+E+FR
Sbjct: 295 IGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAIEMFR 354

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
           +M     E +     ++L A A LA ++    IH   +R G    V V + LID+Y K G
Sbjct: 355 EM----EEKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSG 410

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
            ++ A +++S++ +++  ++ W+ +++    +G GE AVS F +MV+ G++P+ ++F + 
Sbjct: 411 CIDYASRVYSKMSVRN--MITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAV 468

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           L AC H GL++EG + F  M +++      +HY+C++DLLGRAG  +EA +L+     + 
Sbjct: 469 LTACGHTGLVEEGRNYFALMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLDRAECRN 528

Query: 584 THAVWGALLGACVIHGNV-ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642
             ++WG LLG C  + +   + E  AK + ELEP+   +YVLLS +Y A+ R  DA  +R
Sbjct: 529 DASLWGVLLGPCAANTDASSIAERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDALKIR 588

Query: 643 DVMDEKGLRKAPAHSLIE 660
            +M  +G+ K    S I+
Sbjct: 589 KLMVRRGVAKTVGQSWID 606



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 203/422 (48%), Gaps = 12/422 (2%)

Query: 35  LHAFIITSGPLFTH-LRSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
            H  +IT G  + H + S+L   YG      + R +FDEM E     +  V+  +++N  
Sbjct: 184 FHGVVITHGFEWNHVISSTLAYMYGVNKEPVDARRVFDEMPEPDVICWTAVLSAFSKNDL 243

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             ++L +F  M R     PD  T+  V+ AC +L   K G  +HG+++  G   +  V +
Sbjct: 244 YEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVES 303

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            L+ MY   G V+ AR+VF+ M   ++VSW+ L+ GY +N   ++A+ +F  M     E 
Sbjct: 304 SLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAIEMFREM----EEK 359

Query: 211 DCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
           D     +VL AC  L  + +G+ IH + V  G  G N+   +AL+D+Y K G ++ A  V
Sbjct: 360 DLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGCFG-NVIVESALIDLYGKSGCIDYASRV 418

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           + +MS R+++TW +M++  A NG    A+  F  M  +G++P+ ++  ++L+AC     +
Sbjct: 419 YSKMSVRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAVLTACGHTGLV 478

Query: 330 KRGRSLHAWTIKQ-NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP-WNAILA 387
           + GR+  A   K   ++      + +ID+  +  L + +  +  R   +     W  +L 
Sbjct: 479 EEGRNYFALMAKSYGIKPGTEHYSCMIDLLGRAGLFEEAENLLDRAECRNDASLWGVLLG 538

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
            C  N  A    E   + ++E+      +   L   Y  +     A+ I   ++R G   
Sbjct: 539 PCAANTDASSIAERIAKRMMELEPKYHMSYVLLSNMYKAIGRHGDALKIRKLMVRRGVAK 598

Query: 448 VV 449
            V
Sbjct: 599 TV 600


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 185/569 (32%), Positives = 311/569 (54%), Gaps = 38/569 (6%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYM---NFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           +H +++ TG     +  + LI   +   +F  +  A  VFD++ E +++ WNT+  G+  
Sbjct: 21  IHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTMFRGHAL 80

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           ++    AL ++  M+  G+ P+  +   +L AC   K    G+ IH  V       ++  
Sbjct: 81  SSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYV 140

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG----------------- 292
             +L+ MYVK G   +AR VFD+ S RDVV++T++I GYA NG                 
Sbjct: 141 HTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDV 200

Query: 293 --------------DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
                         + + AL LF+ M    V+P+  T+ ++LSAC+    ++ GR +H+W
Sbjct: 201 VSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSW 260

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
                    + +  ALID+Y KC  V+ +  +F   S K  + WN ++ G  H  L ++A
Sbjct: 261 IDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEA 320

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY--GFLSVVEVSTGLI 456
           + LF++ML     PN+ T+ S+LPA A L  +     IH Y+ +   G  +   + T LI
Sbjct: 321 LLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLI 380

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516
           D+Y+KCG +E+A ++F  +   ++ +  W+ +I G+ MHG    A  +F  M + G++P+
Sbjct: 381 DMYAKCGDIEAAQQVFDSM--LNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPD 438

Query: 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
           ++TF   L ACSH G+LD G  +F  M E+++   + +HY C++DLLG +G   EA ++I
Sbjct: 439 DITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMI 498

Query: 577 RTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWK 636
            +M + P   +W +LL AC +HGNVELGE  A+ L ++EP+N G+YVLLS +Y+   RW 
Sbjct: 499 NSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWN 558

Query: 637 DAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           +    R ++++KG++K P  S IE+ +++
Sbjct: 559 EVAKRRALLNDKGMKKVPGCSSIEIDSVV 587



 Score =  248 bits (633), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 154/484 (31%), Positives = 252/484 (52%), Gaps = 38/484 (7%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +FD + E +  ++NT+ + +A +     +L +++ M+ LG   P++YT+P ++KAC    
Sbjct: 59  VFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLG-LVPNSYTFPFLLKACAKSK 117

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD--------------- 170
             + G  +HG VL  G D+D +V   LIAMY+  G  + ARKVFD               
Sbjct: 118 AFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIK 177

Query: 171 ------------AMWEH----SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
                        M++      VVSWN LISGY +    KEAL +F  M+K+ V+PD ++
Sbjct: 178 GYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDEST 237

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           +V+VL AC     IE+GR +H  +     G N+   NAL+D+Y+KCG V  A  +F+ +S
Sbjct: 238 MVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLS 297

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
            +DV++W ++I GY      + AL LFQ M   G  PN +T+ S+L AC+ L  +  GR 
Sbjct: 298 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRW 357

Query: 335 LHAWTIK--QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           +H +  K  + +     + T+LIDMYAKC  ++ + QVF     +    WNA++ G   +
Sbjct: 358 IHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMH 417

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEV 451
           G A  A ++F +M  + +EP+D T   LL A +    L    +I   +   Y     +E 
Sbjct: 418 GRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEH 477

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
              +ID+    G  + A ++ + + + D D V+W  ++    MHG+ E   S  + +++ 
Sbjct: 478 YGCMIDLLGHSGLFKEAEEMINSMEM-DPDGVIWCSLLKACKMHGNVELGESFAQNLIK- 535

Query: 512 GVQP 515
            ++P
Sbjct: 536 -IEP 538



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 117/382 (30%), Positives = 199/382 (52%), Gaps = 9/382 (2%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++L++ Y   G++ + + +FDE+  +    +N ++  YA+ G   ++L++F  M++    
Sbjct: 173 TALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTN-V 231

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PD  T   V+ AC   A  +LG  +H  +   GF  +  + N LI +Y+  GEV+ A  
Sbjct: 232 KPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASG 291

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F+ +    V+SWNTLI GY      KEAL++F  ML+SG  P+  +++S+LPAC +L  
Sbjct: 292 LFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGA 351

Query: 228 IEMGRMIHELVAGGRLGKNIAA--WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           I++GR IH  +     G +  +    +L+DMY KCG +  A+ VFD M  R + +W +MI
Sbjct: 352 IDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMI 411

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL-HAWTIKQNL 344
            G+A++G    A  +F  M+ +G+ P+ +T   LLSACS    L  GR +  + T    +
Sbjct: 412 FGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKI 471

Query: 345 ECEVIVETALIDMYAKCNLVKLSFQVF-ARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
             ++     +ID+     L K + ++  +       V W ++L  C  +G      E F 
Sbjct: 472 TPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELG-ESFA 530

Query: 404 QMLVEVVEPNDATLNSLLPAYA 425
           Q L+++   N  +   L   YA
Sbjct: 531 QNLIKIEPKNSGSYVLLSNIYA 552



 Score = 38.9 bits (89), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 8/130 (6%)

Query: 422 PAYAILAD---LQQAMNIHCYLIRYGFLSVVEVSTGLID---IYSKCGSLESAHKIFSEI 475
           P+ ++L +   LQ    IH  +I+ G  +     + LI+   +      L  A  +F  I
Sbjct: 4   PSLSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSI 63

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
             ++ ++++W+ +  G+ +     +A+ L+  M+  G+ PN  TF   L AC+      E
Sbjct: 64  --QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFRE 121

Query: 536 GLDLFNFMLE 545
           G  +   +L+
Sbjct: 122 GQQIHGHVLK 131


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 182/537 (33%), Positives = 295/537 (54%), Gaps = 35/537 (6%)

Query: 158 NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVS 217
           +F     A  VF  + E + + WNT++ GY  ++    AL ++  M+  G+ P+  +   
Sbjct: 12  HFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPF 71

Query: 218 VLPACGYLKEIEMGRMIHELV--------------------AGGRLG-----------KN 246
           +L +C   K  E G+ IH  V                      GRL            ++
Sbjct: 72  LLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRD 131

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           + ++ AL+  Y   G++  A+ +FD +  +DVV+W +MI+GYA  G  + AL LF+ M  
Sbjct: 132 VVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMK 191

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
             VRP+  T+ ++LSAC+    ++ GR +H+W         + +  ALID+Y+KC  V+ 
Sbjct: 192 TNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVET 251

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           +  +F   S K  V WN ++ G  H  L ++A+ LF++ML     PND T+ S+LPA A 
Sbjct: 252 ACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAH 311

Query: 427 LADLQQAMNIHCYLIRY--GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
           L  +     IH Y+ +      +   + T LID+Y+KCG +E+AH++F+ +    K +  
Sbjct: 312 LGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSM--LHKSLSS 369

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+ +I G+ MHG       LF  M ++G++P+++TF   L ACSH G LD G  +F  M 
Sbjct: 370 WNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMT 429

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
           +++    + +HY C++DLLG +G   EA ++I+TMP++P   +W +LL AC  HGN+EL 
Sbjct: 430 QDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELA 489

Query: 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           E  A+ L ++EPENPG+YVLLS +Y+    W +   VR +++ KG++K P  S IE+
Sbjct: 490 ESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEI 546



 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 153/484 (31%), Positives = 250/484 (51%), Gaps = 38/484 (7%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F  + E +  ++NT+++ YA +     +LK+++ M+ LG   P++YT+P ++K+C    
Sbjct: 22  VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLL-PNSYTFPFLLKSCAKSK 80

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFD--------------- 170
             + G  +HG VL  G++ D +V   LI+MY   G ++ A KVFD               
Sbjct: 81  AFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALIT 140

Query: 171 ------------AMWEH----SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
                        M++      VVSWN +ISGY +    KEAL +F  M+K+ V PD  +
Sbjct: 141 GYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGT 200

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274
           +V+VL AC   + +E+GR +H  +     G N+   NAL+D+Y KCG V  A  +F+ +S
Sbjct: 201 MVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLS 260

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
            +DVV+W ++I GY      + AL LFQ M   G  PN +TI S+L AC+ L  +  GR 
Sbjct: 261 CKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRW 320

Query: 335 LHAWTIK--QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           +H +  K  +++     + T+LIDMYAKC  ++ + QVF     K    WNA++ G   +
Sbjct: 321 IHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMH 380

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEV 451
           G A    +LF +M    +EP+D T   LL A +    L    +I   + + Y     +E 
Sbjct: 381 GRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEH 440

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
              +ID+    G  + A ++   +P+ + D V+W  ++     HG+ E A S  + +++ 
Sbjct: 441 YGCMIDLLGHSGLFKEAKEMIKTMPM-EPDGVIWCSLLKACRRHGNLELAESFARNLMK- 498

Query: 512 GVQP 515
            V+P
Sbjct: 499 -VEP 501



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 123/415 (29%), Positives = 204/415 (49%), Gaps = 11/415 (2%)

Query: 51  SSLVRAYGHVSNVRI---LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++L+  Y    N+R    +FDE+  +    +N ++  YA+ G+  ++L++F  M++    
Sbjct: 136 TALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTN-V 194

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PD  T   V+ AC      +LG  +H  +   GF  +  + N LI +Y   G+V+ A  
Sbjct: 195 RPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACG 254

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           +F+ +    VVSWNTLI GY      KEAL++F  ML+SG  P+  ++VS+LPAC +L  
Sbjct: 255 LFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGA 314

Query: 228 IEMGRMIHELVAG--GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
           I++GR IH  +      +    +   +L+DMY KCG +  A  VF+ M  + + +W +MI
Sbjct: 315 IDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMI 374

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
            G+A++G       LF  M+  G+ P+ +T   LLSACS    L  GR +   ++ Q+ +
Sbjct: 375 FGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFK-SMTQDYD 433

Query: 346 CEVIVE--TALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELF 402
               +E    +ID+     L K + ++      +   V W ++L  C  +G    A E F
Sbjct: 434 ITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELA-ESF 492

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
            + L++V   N  +   L   YA   +  +   +   L   G   V   S+  ID
Sbjct: 493 ARNLMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEID 547


>gi|357483095|ref|XP_003611834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513169|gb|AES94792.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 985

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 212/656 (32%), Positives = 342/656 (52%), Gaps = 15/656 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIIT----SGPLFTHLRSSLVRAY---GHVSNVRILFDEMS 71
           L+++   T S+   +QLHA ++T    SG     L ++++  Y   G + +   +FD+M 
Sbjct: 285 LLKKCRITTSLQEARQLHALLLTTTNASGSKSAFLYNNIISMYSRCGSLEDAHQVFDKMP 344

Query: 72  ERSSFLYNTVMKMYAQNGASH--DSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           +R+   YN ++  Y++    H   +  ++  M  +G   P N T   +++A +      +
Sbjct: 345 QRTHVSYNALLAAYSRVSEQHCVYAFNLYTQMENMG-LRPSNMTITSLLQAASLHGDLLI 403

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G+ LH + L  GF  D  V   L+ MY +  ++ +A  VF  M E   V+WN+LI GY K
Sbjct: 404 GLLLHAKSLKFGFLNDICVQTSLLNMYSSCMDLSSAESVFCDMNERDNVAWNSLILGYLK 463

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N   ++ + +F  M+  G  P   +   +L AC  LK+   GR+IH  V  G +  ++  
Sbjct: 464 NDKIEKGVYLFIEMMWVGFTPTVYTFCMILSACSRLKDYFSGRLIHARVIVGNVSPDLHL 523

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQFEG 308
            NALVDMY   G    A ++F RM + D+V+W SMI+GY  N D   A+ LF QL     
Sbjct: 524 QNALVDMYCNAGDTQTAYMIFSRMEKWDLVSWNSMISGYFENEDGEKAMNLFVQLKALCF 583

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
            +P+  T   ++SA  +      G+ LH   IK      V V + L+ MY K    + + 
Sbjct: 584 PKPDDYTYAGIISATGAFPCFSYGKPLHGQVIKAGFVRSVFVGSTLVSMYFKNQETEAAL 643

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           +VF     K  + W  ++ G         A+  F +M  EV E +D  L+ +L   A LA
Sbjct: 644 RVFCSIPGKDAILWTEMITGYSKMADGMGAIRCFSEMHHEVHEIDDYVLSGVLSVCAYLA 703

Query: 429 DLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
            L+Q   IHCY  + G+   + VS  LID+Y+K G+LE+A+ +FS+  +   D+  W+ +
Sbjct: 704 ILRQGEIIHCYAYKLGYDVEMSVSGSLIDMYAKNGNLEAAYLVFSQ--VSHPDLKCWNSM 761

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           + G+  HG  + A+ LF+E+++ G+ P++VTF S L ACSH  L+++G  L+N+M  +  
Sbjct: 762 LGGFSHHGMVDDALKLFEEIIKQGLVPDQVTFLSLLSACSHSRLVEQGKLLWNYM-SSIG 820

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP-LKPTHAVWGALLGACVIHGNVELGEVA 607
                 HY+C+V LL RA  L+EA ++I   P ++    +W  LL ACVI+ N+++G  A
Sbjct: 821 LVPGPKHYSCMVTLLSRAALLEEAEEIINKSPYVEDNVELWRTLLSACVINKNLKVGVRA 880

Query: 608 AKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           A+ +     E+    +LLS LY+A  RW +   +R  M    + K P  S IE +N
Sbjct: 881 AEEVLRFNAEDGPTLILLSNLYAAAGRWDEVAEIRRNMKGLIMEKEPGLSWIEAKN 936


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 186/484 (38%), Positives = 279/484 (57%), Gaps = 26/484 (5%)

Query: 203 MLKSGVEPDCA--SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           ++    +PD    +  SVL  C  LK I+ GR IH ++    +  +    + LV MYV C
Sbjct: 90  LINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTC 149

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP--------- 311
           G + E R +FD+++   V  W  ++NGYA  G+ R +L LF+ M+  G+R          
Sbjct: 150 GDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFD 209

Query: 312 -----NSLTIGSLLSACSSLYYLKRGRSLHAWT----IKQNLECEVIVE----TALIDMY 358
                + ++  S++S   S    ++G  L        I  +L   V VE      L+DMY
Sbjct: 210 ELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMY 269

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
           +K   +  + QVF    ++  V W +++AG    GL+  +V LF +M  E + PN  T+ 
Sbjct: 270 SKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMA 329

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
            +LPA A LA L++   IH +++R GF     V+  L+D+Y KCG+L  A  +F  IP  
Sbjct: 330 CILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIP-- 387

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
           +KD+V W+V+IAGYGMHG+G  A++ F EM  SG++P+EV+F S L+ACSH GLLDEG  
Sbjct: 388 EKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWG 447

Query: 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598
            FN M  N     +++HY CIVDLL RAG L +AY  I+ MP++P   +WGALL  C I+
Sbjct: 448 FFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIY 507

Query: 599 GNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSL 658
            +V+L E  A+ +FELEPEN G YVLL+ +Y+   +W++ + +R+ +  +GLRK P  S 
Sbjct: 508 HDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSW 567

Query: 659 IEVR 662
           IE++
Sbjct: 568 IEIK 571



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 198/412 (48%), Gaps = 44/412 (10%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM 172
           TY  V++ C DL   + G  +H  +     ++D  +G+ L+ MY+  G+++  R++FD +
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232
               V  WN L++GY K    +E+L +F  M + G+     S   +    G    I    
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIR-RVESARKLFDELGDRDVISWNS 221

Query: 233 MIHELVAGGRLGKNIAAW-----------------------NALVDMYVKCGSVNEARLV 269
           MI   V+ G   K +  +                       N L+DMY K G++N A  V
Sbjct: 222 MISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQV 281

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F+ M ER VV+WTSMI GYA  G    ++ LF  M+ E + PNS+T+  +L AC+SL  L
Sbjct: 282 FETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAAL 341

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           +RG+ +H   ++     +  V  AL+DMY KC  + L+  +F    +K  V W  ++AG 
Sbjct: 342 ERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGY 401

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
             +G   +A+  F +M    +EP++ +  S+L A +    L +          +GF +++
Sbjct: 402 GMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEG---------WGFFNMM 452

Query: 450 ----------EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
                     E    ++D+ ++ G+L  A+K    +PI + D  +W  ++ G
Sbjct: 453 RNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPI-EPDATIWGALLCG 503



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 123/405 (30%), Positives = 201/405 (49%), Gaps = 41/405 (10%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERS 74
           ++Q  A  KSI   +++H+ I ++   +   L S LV  Y   G +   R +FD+++   
Sbjct: 107 VLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEK 166

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY-------------NPDNYTYPIVIKAC 121
            FL+N +M  YA+ G   +SL +F  M  LG               + D  ++  +I   
Sbjct: 167 VFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGY 226

Query: 122 TDLAWRKLGIALHGRVLITGFDMD--TFVG------NCLIAMYMNFGEVKAARKVFDAMW 173
                 + G+ L  ++L+ G + D  T V       NCL+ MY   G + +A +VF+ M 
Sbjct: 227 VSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMG 286

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
           E SVVSW ++I+GY +   +  ++ +F  M K  + P+  ++  +LPAC  L  +E G+ 
Sbjct: 287 ERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQE 346

Query: 234 IHE--LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
           IH   L  G  L +++A  NALVDMY+KCG++  ARL+FD + E+D+V+WT MI GY ++
Sbjct: 347 IHGHILRNGFSLDRHVA--NALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMH 404

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
           G    A+  F  M+  G+ P+ ++  S+L ACS    L  G     W     +     +E
Sbjct: 405 GYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEG-----WGFFNMMRNNCCIE 459

Query: 352 ------TALIDMYAKC-NLVKLSFQVFARTSKKKTVPWNAILAGC 389
                   ++D+ A+  NL K    +     +     W A+L GC
Sbjct: 460 PKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGC 504



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 128/242 (52%), Gaps = 3/242 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G++++   +F+ M ERS   + +++  YA+ G S  S+++F  M +   + P++ T   +
Sbjct: 273 GNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLF-PNSITMACI 331

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + AC  LA  + G  +HG +L  GF +D  V N L+ MY+  G +  AR +FD + E  +
Sbjct: 332 LPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDL 391

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSW  +I+GY  + Y  EA+  F+ M  SG+EPD  S +S+L AC +   ++ G     +
Sbjct: 392 VSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNM 451

Query: 238 VAGG-RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVR 295
           +     +      +  +VD+  + G++++A      M  E D   W +++ G  +  DV+
Sbjct: 452 MRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVK 511

Query: 296 NA 297
            A
Sbjct: 512 LA 513


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 206/646 (31%), Positives = 333/646 (51%), Gaps = 44/646 (6%)

Query: 58  GHVSNVRILFDEMSERS-SFLYNTVMKMYAQNG---ASH--------------------- 92
           G ++  R LFD+M  R+ +F  N ++  Y+++G   A+H                     
Sbjct: 48  GRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIG 107

Query: 93  -----------DSLKMFLGMLRLGEYNPDNYTYPIVIK---ACTDLAWRKLGIALHGRVL 138
                      D++ +F  MLR G   PD  T   V+    A    A   +  +LH   L
Sbjct: 108 AFASAPGARASDAVSLFRDMLREG-VAPDRVTVATVLNLPPASGGTAAAIIIASLHPFAL 166

Query: 139 ITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
             G    +  V N L+  Y   G + AAR+VF  M     V++N ++ G  K     EAL
Sbjct: 167 KLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEAL 226

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
            +F  M + G+     +  +VL     + ++ +GR +H LVA      N+   N+L+D Y
Sbjct: 227 DLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVARA-TSSNVFVNNSLLDFY 285

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
            KC  ++E + +F  M ERD V++  MI GYA N      L LF+ MQ       +L   
Sbjct: 286 SKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYA 345

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           SLLS   S+ ++  G+ +HA  +   L  E +V  ALIDMY+KC ++  +   F   + K
Sbjct: 346 SLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDK 405

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V W A++ GCV NG   +A++LF  M    + P+ AT +S + A + LA +     +H
Sbjct: 406 TGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLH 465

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            YLIR G +S V   + L+D+Y+KCG L+ A + F E+P  +++ + W+ +I+ Y  +G 
Sbjct: 466 SYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMP--ERNSISWNAVISAYAHYGQ 523

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
            + A+ +F+ M+  G +P+ VTF S L ACSH GL +E +  F  M   +      +HY+
Sbjct: 524 AKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYS 583

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617
           C++D LGR GR D+  +++  MP +    +W ++L +C  HGN +L  VAA+ LF +   
Sbjct: 584 CVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGST 643

Query: 618 NPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +   YV+LS +++   +W+DA  V+ +M ++GLRK   +S +EV++
Sbjct: 644 DATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKH 689



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 143/497 (28%), Positives = 239/497 (48%), Gaps = 11/497 (2%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLR--SSLVRAY---GHVSNVRIL 66
           T   V+ L      T +      LH F +  G L +++   ++L+ AY   G ++  R +
Sbjct: 138 TVATVLNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRV 197

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           F EM  R S  YN +M   ++ G+  ++L +F  M R G      +T+  V+   T +  
Sbjct: 198 FQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKG-LAATRFTFSTVLTVATGVGD 256

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
             LG  +HG ++      + FV N L+  Y     +   +K+F  M E   VS+N +I+G
Sbjct: 257 LCLGRQVHG-LVARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAG 315

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGK 245
           Y  N  A   L +F  M     +       S+L   G +  I +G+ IH +LV  G   +
Sbjct: 316 YAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSE 375

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           ++   NAL+DMY KCG ++ A+  F   +++  V+WT+MI G   NG    AL LF  M+
Sbjct: 376 DLVG-NALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMR 434

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
             G+ P+  T  S + A S+L  +  GR LH++ I+      V   +AL+DMY KC  + 
Sbjct: 435 RAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLD 494

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + Q F    ++ ++ WNA+++   H G A+ A+++F  ML    +P+  T  S+L A +
Sbjct: 495 EALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACS 554

Query: 426 ILADLQQAMN-IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
                ++ M         YG     E  + +ID   + G  +   ++  E+P +D D ++
Sbjct: 555 HNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFED-DPII 613

Query: 485 WSVIIAGYGMHGHGETA 501
           WS I+     HG+ + A
Sbjct: 614 WSSILHSCRTHGNQDLA 630



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 177/394 (44%), Gaps = 33/394 (8%)

Query: 233 MIHELVAGGRLGK------------NIAAWNALVDMYVKCGSVNEARLVFDRMSE--RDV 278
           ++H L++ GRL +            N  + N ++  Y + G ++ A  +F       RD 
Sbjct: 40  LLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSPPHLRDA 99

Query: 279 VTWTSMINGYALNGDVR--NALGLFQLMQFEGVRPNSLTIGSLLS---ACSSLYYLKRGR 333
           VTWT MI  +A     R  +A+ LF+ M  EGV P+ +T+ ++L+   A           
Sbjct: 100 VTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASGGTAAAIIIA 159

Query: 334 SLHAWTIKQN-LECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           SLH + +K   L   V+V   L+D Y K  L+  + +VF     + +V +NA++ GC   
Sbjct: 160 SLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKE 219

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS 452
           G   +A++LF  M  + +     T +++L     + DL     +H  + R    S V V+
Sbjct: 220 GSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVAR-ATSSNVFVN 278

Query: 453 TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512
             L+D YSKC  L+   K+F E  + ++D V ++V+IAGY  +      + LF+EM    
Sbjct: 279 NSLLDFYSKCDCLDEMKKLFHE--MIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLS 336

Query: 513 VQPNEVTFTSALH---ACSHGGLLDE-GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
                + + S L    +  H G+  +    L    L +      A     ++D+  + G 
Sbjct: 337 FDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNA-----LIDMYSKCGM 391

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           LD A         K T   W A++  CV +G  E
Sbjct: 392 LDAAKTNFINKNDK-TGVSWTAMITGCVQNGQQE 424


>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
          Length = 654

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 211/661 (31%), Positives = 328/661 (49%), Gaps = 58/661 (8%)

Query: 8   TLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVR--- 64
           TLP        L+Q Y   +S+   K LHA II S     ++ +SLV  Y     +R   
Sbjct: 2   TLPSNRSFFTALLQ-YTHNRSLQKGKALHAQIIKSSSSCVYIANSLVNLYAKCQRLREAK 60

Query: 65  ILFDEMSERSSFLYNTVMKMYAQNGASHDS--LKMFLGMLRLGEYNPDNYTYPIVIKACT 122
            +F+ +  +    +N ++  Y+Q+G S  S  +++F  M R     P+ +T+  V  A +
Sbjct: 61  FVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRM-RAENTAPNAHTFAGVFTAAS 119

Query: 123 DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT 182
            L     G   H   +      D FVG+ L+ MY   G    ARKVFD M E + VSW T
Sbjct: 120 TLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWAT 179

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           +ISGY     A EAL +F  M +     +     SVL A    + +  G+ IH +     
Sbjct: 180 MISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNG 239

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
           L   ++  NALV MY KCGS+++A   F+  S+++ +TW++MI G A +GD   AL LF 
Sbjct: 240 LLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFS 299

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            M   G+RP+  T   +++ACS L     G+ +H + +K   E ++ V TAL+DMYAKC+
Sbjct: 300 SMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCS 359

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            +  + + F    +   V W +++ G V NG    A+ L+ +M +E + PN+ T+ S+L 
Sbjct: 360 SIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLK 419

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A + LA L+Q   IH   ++YGF   V + + L  +Y+KCG L+    +F  +P   +D+
Sbjct: 420 ACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPA--RDV 477

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
           + W+ +I+G   +G G+ A+ LF+EM   G +P+ VTF + L ACSH GL++ G   F  
Sbjct: 478 ISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRM 537

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           M +      R +HY C+VD+L RAG+L EA +   +               A + HG   
Sbjct: 538 MFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTES---------------ATIDHG--- 579

Query: 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
                                           W+D E VR +M  +G+ K P  S IE++
Sbjct: 580 -------------------------------MWEDVERVRRMMKLRGVSKEPGCSWIELK 608

Query: 663 N 663
           +
Sbjct: 609 S 609


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 184/478 (38%), Positives = 273/478 (57%), Gaps = 7/478 (1%)

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N   KEAL+    M   G+E +     SVL  C     I  G+ +H  +        +  
Sbjct: 458 NRQLKEALLE---MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYL 514

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
              L+ +Y KC  + +AR V D M ER+VV+WT+MI+GY+  G    AL LF  M   G 
Sbjct: 515 RTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGT 574

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
            PN  T  ++L++C+S    + GR +H+  IK + E  + V ++L+DMYAK   +  + +
Sbjct: 575 APNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARR 634

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           VF    ++  V   AI++G    GL  +A++LFR++  E +  N  T  S+L A + LA 
Sbjct: 635 VFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAA 694

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           L     +H +++R      V +   LID+YSKCGSL  + +IF  +P  ++ ++ W+ ++
Sbjct: 695 LDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMP--ERTVISWNAML 752

Query: 490 AGYGMHGHGETAVSLFKEMVQSG-VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
            GY  HG G  AV LFK M +   V+P+ VTF + L  CSHGG+ D GL++F  M+    
Sbjct: 753 VGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKD 812

Query: 549 TCS-RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVA 607
                 +HY C+VDL GRAGR++EA++ I+ MP +PT A+WG+LLGAC +H NV +GE  
Sbjct: 813 GFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFV 872

Query: 608 AKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           A+ L E+E EN GNYV+LS LY++  RW D   VR++M EK + K P  S IE+   L
Sbjct: 873 ARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTL 930



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 209/385 (54%), Gaps = 4/385 (1%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           Y  V+  C      + G  +H  ++ T ++   ++   LI +Y     +  AR+V D M 
Sbjct: 480 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 539

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
           E +VVSW  +ISGY +  YA EAL +F  ML SG  P+  +  +VL +C      ++GR 
Sbjct: 540 ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ 599

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           IH LV       +I   ++L+DMY K G + EAR VFD + ERDVV+ T++I+GYA  G 
Sbjct: 600 IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGL 659

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              AL LF+ +Q EG+R N +T  S+L+A S L  L  GR +H+  ++  L   V+++ +
Sbjct: 660 DEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNS 719

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE-VVEP 412
           LIDMY+KC  +  S ++F    ++  + WNA+L G   +GL R+AVELF+ M  E  V+P
Sbjct: 720 LIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKP 779

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLI--RYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           +  T  ++L   +      + + I   ++  + GF   +E    ++D++ + G +E A +
Sbjct: 780 DSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFE 839

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMH 495
              ++P  +    +W  ++    +H
Sbjct: 840 FIKKMPF-EPTAAIWGSLLGACRVH 863



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/394 (31%), Positives = 215/394 (54%), Gaps = 20/394 (5%)

Query: 25  ATKSIAGTKQLHAFIITS---GPLFTHLRSSLVRAYGH---VSNVRILFDEMSERSSFLY 78
           +  +I   +++HA +I +    P++  LR+ L+  Y     + + R + DEM ER+   +
Sbjct: 489 SQTAIREGQRVHAHMIKTCYEPPVY--LRTRLIVLYNKCRCLGDARRVLDEMPERNVVSW 546

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
             ++  Y+Q G + ++L +F+ ML  G   P+ +T+  V+ +CT  +  +LG  +H  V+
Sbjct: 547 TAMISGYSQRGYASEALHLFVEMLMSGT-APNEFTFATVLTSCTSSSGFQLGRQIHSLVI 605

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
            T F+   FVG+ L+ MY   G++  AR+VFD + E  VVS   +ISGY +    +EAL 
Sbjct: 606 KTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALD 665

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           +F  + + G+  +  +  SVL A   L  ++ GR +H  V   +L   +   N+L+DMY 
Sbjct: 666 LFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYS 725

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG-VRPNSLTIG 317
           KCGS+  +R +FD M ER V++W +M+ GY+ +G  R A+ LF+LM+ E  V+P+S+T  
Sbjct: 726 KCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFL 785

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQN--LECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
           ++LS CS      RG  +    + Q    E E+     ++D++ +   V+ +F+   +  
Sbjct: 786 AVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMP 845

Query: 376 KKKTVP-WNAILAGC-----VHNG--LARKAVEL 401
            + T   W ++L  C     VH G  +AR+ +E+
Sbjct: 846 FEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEI 879


>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 923

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 208/637 (32%), Positives = 323/637 (50%), Gaps = 11/637 (1%)

Query: 34  QLHAFIITSGPLFTHLR--SSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           Q+ A ++ SG L TH+   +SL+  +G+   V +   LFD M ER    +N ++ MY+  
Sbjct: 166 QVTAHVVVSG-LLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHE 224

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
              +    + L  +R GE  PD  T   ++  C       LG  +H   + +G      +
Sbjct: 225 EV-YSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPL 283

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+ MY   G++  A  +F  M    V+SWNT+IS Y ++    EAL     +L++  
Sbjct: 284 INALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDE 343

Query: 209 -EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
             P+  +  S L AC   + +  GR IH ++    L   +   N+L+ MY KC S+ +  
Sbjct: 344 GPPNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTE 403

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VF+ M   DVV+   +  GYA   DV NA+ +F  M+  G++PN +T+ +L   C SL 
Sbjct: 404 RVFESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLG 463

Query: 328 YLKR-GRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
            L   G  LHA+  +  L  +  +  +LI MYA C  ++ S  +F+R + K  + WNAI+
Sbjct: 464 DLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAII 523

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           A  V +G   +A++LF        + +   L   L + A LA L++ M +H   ++ G  
Sbjct: 524 AANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLD 583

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
               V    +D+Y KCG ++   K   +     +    W+ +I+GY  +G+ + A   FK
Sbjct: 584 CDSHVVNATMDMYGKCGKMDCMLKTLPDPA--HRPTQCWNTLISGYARYGYFKEAEDTFK 641

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
            MV  G +P+ VTF + L ACSH GL+D+G+D +N M           H  CIVDLLGR 
Sbjct: 642 HMVSVGQKPDYVTFVALLSACSHAGLIDKGMDYYNSMAPTFGVSPGIKHCVCIVDLLGRL 701

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           G+  EA   I  MP+ P   +W +LL +   H N+++G  AAK L EL+P +   YVLLS
Sbjct: 702 GKFAEAEKFIDEMPVLPNDLIWRSLLSSSRTHKNLDIGRKAAKNLLELDPFDDSAYVLLS 761

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            LY+   RW D + +R  M    L K PA S ++++N
Sbjct: 762 NLYATNARWVDVDKLRSHMKTIKLNKRPACSWLKLKN 798



 Score =  245 bits (626), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 175/606 (28%), Positives = 293/606 (48%), Gaps = 19/606 (3%)

Query: 35  LHAFIITSGPLFT-HLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           +HA    +G +   ++ ++L+  YG    V N + LF EM +R+   +  +M   + NG 
Sbjct: 66  IHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGC 125

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             ++L  +  M + G     N     V+  C  L     G+ +   V+++G      V N
Sbjct: 126 MEEALVAYRRMRKEGVMCNAN-ALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVAN 184

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            LI M+ N   V+ A ++FD M E   +SWN +IS Y       +  +V   M    V+P
Sbjct: 185 SLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKP 244

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D  ++ S++  C     + +G  IH L     L  ++   NALV+MY   G ++EA  +F
Sbjct: 245 DVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLF 304

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNAL-GLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
             MS RDV++W +MI+ Y  +     AL  L QL+Q +   PNS+T  S L ACSS   L
Sbjct: 305 RNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEAL 364

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
             GR++HA  ++++L+  +++  +L+ MY+KCN ++ + +VF        V  N +  G 
Sbjct: 365 MNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGY 424

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ-AMNIHCYLIRYGFLSV 448
                   A+ +F  M    ++PN  T+ +L      L DL    M +H Y+ + G LS 
Sbjct: 425 AALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSD 484

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             ++  LI +Y+ CG LES+  IFS   I +K ++ W+ IIA    HG GE A+ LF + 
Sbjct: 485 EYITNSLITMYATCGDLESSTGIFSR--INNKSVISWNAIIAANVRHGRGEEAIKLFMDS 542

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
             +G + +       L + ++   L+EG+ L    ++N   C  +      +D+ G+ G+
Sbjct: 543 QHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLDCD-SHVVNATMDMYGKCGK 601

Query: 569 LDEAYDLIRTMPLKPTH---AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           +D    +++T+P  P H     W  L+     +G  +  E   K +  +  + P +YV  
Sbjct: 602 MD---CMLKTLP-DPAHRPTQCWNTLISGYARYGYFKEAEDTFKHMVSV-GQKP-DYVTF 655

Query: 626 SKLYSA 631
             L SA
Sbjct: 656 VALLSA 661



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 144/559 (25%), Positives = 266/559 (47%), Gaps = 19/559 (3%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK- 128
           M  R+S  + T +   A+ G    +  + L ++R  +     +    ++ AC    W++ 
Sbjct: 1   MPHRTSSSWYTAVSGCARCGLESTAFTL-LRVMRERDVPLSGFALASLVTACEHRGWQEG 59

Query: 129 --LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
              G A+H      G   + ++G  L+ +Y + G V  A+++F  M + +VVSW  ++  
Sbjct: 60  AACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVA 119

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
              N   +EALV +  M K GV  +  ++ +V+  CG L++   G  +   V    L  +
Sbjct: 120 LSSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTH 179

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           ++  N+L+ M+     V +A  +FDRM ERD ++W +MI+ Y+          +   M+ 
Sbjct: 180 VSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRH 239

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
             V+P+  T+ SL+S C+S   +  G  +H+  +   L C V +  AL++MY+    +  
Sbjct: 240 GEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDE 299

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML-VEVVEPNDATLNSLLPAYA 425
           +  +F   S++  + WN +++  V +    +A+E   Q+L  +   PN  T +S L A +
Sbjct: 300 AESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACS 359

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
               L     IH  +++    +V+ +   L+ +YSKC S+E   ++F  +P    D+V  
Sbjct: 360 SPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPC--YDVVSC 417

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC-SHGGLLDEGLDLFNFML 544
           +V+  GY        A+ +F  M  +G++PN +T  +    C S G L   G+ L  ++ 
Sbjct: 418 NVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVT 477

Query: 545 ENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
              QT   +D Y    ++ +    G L+ +  +   +  K   + W A++ A V HG   
Sbjct: 478 ---QTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVIS-WNAIIAANVRHGR-- 531

Query: 603 LGEVAAKWLFELEPENPGN 621
            GE A K LF ++ ++ GN
Sbjct: 532 -GEEAIK-LF-MDSQHAGN 547


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 194/538 (36%), Positives = 303/538 (56%), Gaps = 49/538 (9%)

Query: 157 MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVV 216
           + +  ++AAR +FD M E  VVSWN ++SGY +N Y KEA  +FD       E  C + +
Sbjct: 41  VRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFD-------EMPCKNSI 93

Query: 217 S---VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           S   +L A      IE  R + E  A   L     +WN ++  YVK   + +AR +FDRM
Sbjct: 94  SWNGMLAAYVQNGRIEDARRLFESKADWEL----ISWNCMMGGYVKRNRLVDARGIFDRM 149

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQ--------------------------FE 307
            ERD V+W +MI+GYA NG++  A  LF+                             F+
Sbjct: 150 PERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFD 209

Query: 308 GV-RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE-TALIDMYAKCNLVK 365
           G+   NS++  ++++      Y++  R   A  + + + C+ +     +I  YA+   + 
Sbjct: 210 GMPEKNSVSWNAIIAG-----YVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIA 264

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            +   F R  ++ ++ W AI+AG   +G   +A+ LF +M  +    N +T  S L   A
Sbjct: 265 QARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCA 324

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
            +A L+    +H  +++ G  S   V   L+ +Y KCG+++ A+ +F    I++K++V W
Sbjct: 325 EIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFE--GIEEKEVVSW 382

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +IAGY  HG G+ A+ LF+ M ++G+ P++VT    L ACSH GL+D+G + F  M +
Sbjct: 383 NTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQ 442

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
           ++   + + HYTC++DLLGRAGRLD+A +L++ MP +P  A WGALLGA  IHGN ELGE
Sbjct: 443 DYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGE 502

Query: 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            AAK +FE+EP+N G YVLLS LY+A  RW D   +R  M ++G++K P +S +EV+N
Sbjct: 503 KAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQN 560



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/458 (27%), Positives = 221/458 (48%), Gaps = 28/458 (6%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G+V   + +FDEM  ++S  +N ++  Y QNG   D+ ++F       E   D   + ++
Sbjct: 75  GYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLF-------ESKAD---WELI 124

Query: 118 IKACTDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
              C    + K    +  R +     + D    N +I+ Y   GE+  A+++F+      
Sbjct: 125 SWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRD 184

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL--KEIEMGRMI 234
           V +W  ++SGY +N    EA  VFD M      P+  SV       GY+  K ++  R +
Sbjct: 185 VFTWTAMVSGYVQNGMLDEARRVFDGM------PEKNSVSWNAIIAGYVQCKRMDQAREL 238

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
            E +      +N+++WN ++  Y + G + +AR  FDRM +RD ++W ++I GYA +G  
Sbjct: 239 FEAMP----CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYG 294

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             AL LF  M+ +G R N  T  S LS C+ +  L+ G+ +H   +K  LE    V  AL
Sbjct: 295 EEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNAL 354

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           + MY KC  +  ++ VF    +K+ V WN ++AG   +G  ++A+ LF  M    + P+D
Sbjct: 355 LVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDD 414

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
            T+  +L A +    + +       + + YG  +  +  T +ID+  + G L+ A  +  
Sbjct: 415 VTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMK 474

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGH---GETAVSLFKEM 508
            +P  + D   W  ++    +HG+   GE A  +  EM
Sbjct: 475 NMPF-EPDAATWGALLGASRIHGNTELGEKAAKMIFEM 511



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 192/406 (47%), Gaps = 70/406 (17%)

Query: 62  NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNP--DNYTYPIVIK 119
           + R +FD M ER    +NT++  YAQNG         L   RL E +P  D +T+  ++ 
Sbjct: 141 DARGIFDRMPERDEVSWNTMISGYAQNGE-------LLEAQRLFEESPVRDVFTWTAMVS 193

Query: 120 ACTDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV 178
                 + + G+    R +  G  + ++   N +IA Y+    +  AR++F+AM   +V 
Sbjct: 194 G-----YVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVS 248

Query: 179 SWNTLISGYFKNA-------------------------------YAKEALVVFDWMLKSG 207
           SWNT+I+GY +N                                Y +EAL +F  M + G
Sbjct: 249 SWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG 308

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
              + ++  S L  C  +  +E+G+ +H  V    L       NAL+ MY KCG++++A 
Sbjct: 309 ERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAY 368

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           +VF+ + E++VV+W +MI GYA +G  + AL LF+ M+  G+ P+ +T+  +LSACS   
Sbjct: 369 IVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTG 428

Query: 328 YLKRGRS-LHAWTIKQNLECEVIVETALIDMYAKC-------NLVK-LSFQVFARTSKKK 378
            + +G    ++ T    +       T +ID+  +        NL+K + F+  A T    
Sbjct: 429 LVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAAT---- 484

Query: 379 TVPWNAILAGCVHNG---LARKAVELFRQMLVEVVEPNDATLNSLL 421
              W A+L     +G   L  KA ++  +M     EP+++ +  LL
Sbjct: 485 ---WGALLGASRIHGNTELGEKAAKMIFEM-----EPDNSGMYVLL 522


>gi|224087027|ref|XP_002308034.1| predicted protein [Populus trichocarpa]
 gi|222854010|gb|EEE91557.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 187/566 (33%), Positives = 311/566 (54%), Gaps = 8/566 (1%)

Query: 101 MLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG 160
           M   GE   + +T  ++++AC+D+    LG  +HG V+ +GF+ + FVG  LI+MY   G
Sbjct: 1   MCEFGE-KFNEHTCVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSG 59

Query: 161 EVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLP 220
               A KVF+ +    +   N +I  Y K  Y K A+ VF +++  G++P+  +  +++ 
Sbjct: 60  NFDEAEKVFNGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIIS 119

Query: 221 ACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT 280
            C     +E G+ +H L     +    +  NA++ MY K G V EA  +F  M+++++++
Sbjct: 120 TC----NVEEGKQLHGLAVKYGVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLIS 175

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           WT++I+GY  NG    A+  F  ++  GV  +S  + ++L  CS    L  G  +H   I
Sbjct: 176 WTALISGYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDGCSECKNLDLGTQIHGLVI 235

Query: 341 KQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVE 400
           K    C++ + TALID+YAKC   + +  VF   S + T  +NAIL G + N    +   
Sbjct: 236 KLGYPCDINIGTALIDLYAKCKNFQSARTVFNGLSPRSTASFNAILVGFIENDSNEEDPM 295

Query: 401 LF-RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459
           +F  Q+ +  ++P+  + + LL   A  A L +   +H Y I+ GF   + VS  LI +Y
Sbjct: 296 VFLSQLRLAGIKPDSVSFSRLLSLSANRASLVKGRGLHAYSIKTGFAGHISVSNALITMY 355

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
           +KCG +E A++ F+ +   D   + W+ II+ Y +HG GE A+ L++EM + G  P+E+T
Sbjct: 356 AKCGIVEDAYQAFNSMSAND--CISWNAIISAYSLHGQGEKALLLYQEMEEKGFTPDEIT 413

Query: 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
               L AC++ GL ++GL LFN M   +      +HY C+VDLLGRAG L +A D+I   
Sbjct: 414 ILVILQACTYSGLSEDGLHLFNTMESKYGIQPLLEHYACMVDLLGRAGYLSQAMDIINRS 473

Query: 580 PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAE 639
           P   +  +W  L+  C + G++ LG++A+K L +L P+  G+YVL+S +Y+      +A 
Sbjct: 474 PFSESTLLWRTLVNVCKLCGDLNLGKLASKHLLDLSPDEAGSYVLVSNIYAGEGMIDEAS 533

Query: 640 NVRDVMDEKGLRKAPAHSLIEVRNIL 665
            VR  M +  L K    S +E+ N++
Sbjct: 534 KVRTTMKDLKLSKEAGSSWVEIDNMV 559



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 128/482 (26%), Positives = 244/482 (50%), Gaps = 12/482 (2%)

Query: 14  HLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDE 69
           H  + ++Q  +    +   +Q+H F+I SG      + +SL+  Y   G+      +F+ 
Sbjct: 11  HTCVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGNFDEAEKVFNG 70

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           +  +     N ++  Y + G    ++ +F+ ++ +G  +P++YT+  +I  C      + 
Sbjct: 71  VGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVG-LDPNDYTFTNIISTCN----VEE 125

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G  LHG  +  G  + T VGN +I MY   G V+ A ++F  M + +++SW  LISGY +
Sbjct: 126 GKQLHGLAVKYGVLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLISWTALISGYTR 185

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N Y ++A+  F  +   GVE D   + ++L  C   K +++G  IH LV       +I  
Sbjct: 186 NGYGEKAVDGFLELRGCGVECDSGLLATILDGCSECKNLDLGTQIHGLVIKLGYPCDINI 245

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN-GDVRNALGLFQLMQFEG 308
             AL+D+Y KC +   AR VF+ +S R   ++ +++ G+  N  +  + +     ++  G
Sbjct: 246 GTALIDLYAKCKNFQSARTVFNGLSPRSTASFNAILVGFIENDSNEEDPMVFLSQLRLAG 305

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           ++P+S++   LLS  ++   L +GR LHA++IK      + V  ALI MYAKC +V+ ++
Sbjct: 306 IKPDSVSFSRLLSLSANRASLVKGRGLHAYSIKTGFAGHISVSNALITMYAKCGIVEDAY 365

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
           Q F   S    + WNAI++    +G   KA+ L+++M  +   P++ T+  +L A     
Sbjct: 366 QAFNSMSANDCISWNAIISAYSLHGQGEKALLLYQEMEEKGFTPDEITILVILQACTYSG 425

Query: 429 DLQQAMNIHCYL-IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
             +  +++   +  +YG   ++E    ++D+  + G L  A  I +  P  +  + +W  
Sbjct: 426 LSEDGLHLFNTMESKYGIQPLLEHYACMVDLLGRAGYLSQAMDIINRSPFSESTL-LWRT 484

Query: 488 II 489
           ++
Sbjct: 485 LV 486



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 141/287 (49%), Gaps = 6/287 (2%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSN---VRILFDEM 70
           L+  ++   +  K++    Q+H  +I  G P   ++ ++L+  Y    N    R +F+ +
Sbjct: 210 LLATILDGCSECKNLDLGTQIHGLVIKLGYPCDINIGTALIDLYAKCKNFQSARTVFNGL 269

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
           S RS+  +N ++  + +N ++ +   +FL  LRL    PD+ ++  ++    + A    G
Sbjct: 270 SPRSTASFNAILVGFIENDSNEEDPMVFLSQLRLAGIKPDSVSFSRLLSLSANRASLVKG 329

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
             LH   + TGF     V N LI MY   G V+ A + F++M  +  +SWN +IS Y  +
Sbjct: 330 RGLHAYSIKTGFAGHISVSNALITMYAKCGIVEDAYQAFNSMSANDCISWNAIISAYSLH 389

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAA 249
              ++AL+++  M + G  PD  +++ +L AC Y    E G  + + + +   +   +  
Sbjct: 390 GQGEKALLLYQEMEEKGFTPDEITILVILQACTYSGLSEDGLHLFNTMESKYGIQPLLEH 449

Query: 250 WNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVR 295
           +  +VD+  + G +++A  + +R       + W +++N   L GD+ 
Sbjct: 450 YACMVDLLGRAGYLSQAMDIINRSPFSESTLLWRTLVNVCKLCGDLN 496


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 190/572 (33%), Positives = 310/572 (54%), Gaps = 44/572 (7%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR------KVFDAMWEHSVVSWNTLISG 186
           +  ++++TG  +D F  + LI+    F  +  +R      K+ + +   +V SWN +I G
Sbjct: 72  IQAQMILTGLILDGFASSRLIS----FCAISESRNLDYCIKILNNLQNPNVFSWNAVIRG 127

Query: 187 YFKNAYAKEALVVFDWML-KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
             ++   ++ LV++  ML ++G  PD  +   +   C  L    MG  I   V      K
Sbjct: 128 CVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDK 187

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           ++  +N ++ M V  G    A  VFD    RD+V+W S+INGY      R A+G++Q M 
Sbjct: 188 DMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMI 247

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN--- 362
            E V+P+ +T+  ++SAC+ L  LK GR +H +  +  L  ++ +  AL+DMY KC    
Sbjct: 248 TEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLE 307

Query: 363 ----------------------------LVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
                                       L+ ++ ++F    +K  V WNA++  CV   L
Sbjct: 308 AGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANL 367

Query: 395 ARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTG 454
           + +A+ELFR+M    ++P+  T+   L A + L  L   M  H Y+ ++     V + T 
Sbjct: 368 SFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLSLDVALGTA 427

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           LID+Y+KCG++  A ++F+E+P ++   + W+ II G  ++G+   A+  F +M+ SG+ 
Sbjct: 428 LIDMYAKCGNMTKALQVFNEMPRRNS--LTWTAIIGGLALYGNVNDAIFYFSKMIDSGLM 485

Query: 515 PNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYD 574
           P+E+TF   L AC HGGL++EG   F+ M        +  HY+C+V+LLGRAG L+EA +
Sbjct: 486 PDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEE 545

Query: 575 LIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRR 634
           LI+TMP++    VWGAL  AC IH N+ +GE AA  L +L+P + G YVLL+ +Y    +
Sbjct: 546 LIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDLDPHDSGIYVLLANMYREAGK 605

Query: 635 WKDAENVRDVMDEKGLRKAPAHSLIEVRNILT 666
           W++A+N+R +M E+G+ K P  S IEV  I+ 
Sbjct: 606 WEEAQNIRKMMMERGVEKTPGSSSIEVNGIIN 637



 Score =  245 bits (626), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 160/543 (29%), Positives = 267/543 (49%), Gaps = 45/543 (8%)

Query: 5   SHHTLPKTTHLVI---KLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVS 61
           S+ T   TTH  +    L+      KS +  KQ+ A +I +G +     SS + ++  +S
Sbjct: 39  SNPTSWNTTHTYVLSNPLLSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAIS 98

Query: 62  NVRIL------FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYP 115
             R L       + +   + F +N V++   ++      L ++  ML      PDNYTY 
Sbjct: 99  ESRNLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYS 158

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
            + K C +L    +G  + G+VL  GFD D ++ N +I M ++ GE   A KVFD     
Sbjct: 159 FLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVR 218

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
            +VSWN+LI+GY +    +EA+ ++  M+   V+PD  +++ V+ AC  L+ +++GR IH
Sbjct: 219 DLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIH 278

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
             +    L   I+  NAL+DMYVKCG +   +++FD M ++ VV+WT+MI GYA NG + 
Sbjct: 279 RYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLD 338

Query: 296 -------------------------------NALGLFQLMQFEGVRPNSLTIGSLLSACS 324
                                           AL LF+ MQ+  ++P+ +T+   LSACS
Sbjct: 339 MAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACS 398

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
            L  L  G   H +  K NL  +V + TALIDMYAKC  +  + QVF    ++ ++ W A
Sbjct: 399 QLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTA 458

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL-IRY 443
           I+ G    G    A+  F +M+   + P++ T   +L A      +++       +  R+
Sbjct: 459 IIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRF 518

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH---GET 500
                 +  + ++++  + G LE A ++   +P+ + D +VW  +    G+H +   GE 
Sbjct: 519 NLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPM-EADAMVWGALFFACGIHRNLLIGER 577

Query: 501 AVS 503
           A S
Sbjct: 578 AAS 580


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 205/670 (30%), Positives = 338/670 (50%), Gaps = 40/670 (5%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG---PLFT-HLRSSLVRAYGH 59
           P + T P        +++  A    +     +H  ++ +G    LF  +   S    +G 
Sbjct: 185 PDNFTFPC-------VIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGF 237

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           VS+   LFD M ER+   +N+++++++ NG               G + PD  T   V+ 
Sbjct: 238 VSDALKLFDIMPERNLVSWNSMIRVFSDNGDD-------------GAFMPDVATVVTVLP 284

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
            C       +G  +HG  +    D +  V N L+ MY  +G +  ++ +F      +VVS
Sbjct: 285 VCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVS 344

Query: 180 WNTLISGYFKNAYAKEALVVFDWML--KSGVEPDCASVVSVLPAC------GYLKEIEMG 231
           WNT++ G+           +   ML     V+ D  ++++ +P C        LKE+   
Sbjct: 345 WNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCY 404

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
            +  E V    L       NA V  Y KCGS++ A+ VF  +  + + +W ++I GYA +
Sbjct: 405 SLKQEFVYDELLA------NAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQS 458

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
            D R +L     M+  G+ P++ T+ SLLSACS L  L+ G+ +H + I+  LE ++ V 
Sbjct: 459 SDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVY 518

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
            +++ +Y  C  +     +F        V WN ++ G + NG   +A+ LFRQM++  ++
Sbjct: 519 LSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQ 578

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           P   ++ ++  A ++L  L+     H Y +++       ++  +ID+Y+K G++  + K+
Sbjct: 579 PCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKV 638

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F+   +K+K    W+ +I GYGMHG  + A+ LF+EM ++G  P+++TF   L AC+H G
Sbjct: 639 FN--GLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSG 696

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
           LL EGL   + M  +        HY C++D+LGRAG+LD A  +   M  +P   +W +L
Sbjct: 697 LLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSL 756

Query: 592 LGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651
           L  C IH N+E+GE  A  LF LEPE P NYVLLS LY+ + +W D   VR  M E  LR
Sbjct: 757 LSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLR 816

Query: 652 KAPAHSLIEV 661
           K    S IE+
Sbjct: 817 KDAGCSWIEL 826



 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 175/619 (28%), Positives = 306/619 (49%), Gaps = 28/619 (4%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTH--LRSSLVRAY---GHVSNVRILFDEMSER 73
           L+Q     K I   +++H  +  S  L +   L + ++  Y   G   + R  FD +  +
Sbjct: 90  LLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSK 149

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           + F +N V+  Y++N   H+ L+MF+ M+      PDN+T+P VIKAC  ++   +G+A+
Sbjct: 150 NLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAV 209

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           HG V+ TG   D FVGN L++ Y   G V  A K+FD M E ++VSWN++I  +  N   
Sbjct: 210 HGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGD- 268

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
                           PD A+VV+VLP C   +EI +G+ +H       L K +   NAL
Sbjct: 269 -----------DGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNAL 317

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM--QFEGVRP 311
           +DMY K G + +++++F   + ++VV+W +M+ G++  GD+     L + M    E V+ 
Sbjct: 318 MDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKA 377

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           + +TI + +  C     L   + LH +++KQ    + ++  A +  YAKC  +  + +VF
Sbjct: 378 DEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVF 437

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQ 431
                K    WNA++ G   +   R +++   QM    + P++ T+ SLL A + L  L+
Sbjct: 438 HGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLR 497

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
               +H ++IR      + V   ++ +Y  CG L +   +F    ++D  +V W+ +I G
Sbjct: 498 LGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFD--AMEDNSLVSWNTVITG 555

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
           +  +G  E A+ LF++MV  G+QP  ++  +   ACS    L  G +   + L+ H    
Sbjct: 556 HLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALK-HLLED 614

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL 611
            A     I+D+  + G + ++  +   +  K + A W A++    +HG     + A K  
Sbjct: 615 NAFIACSIIDMYAKNGAITQSSKVFNGLKEK-SAASWNAMIMGYGMHGR---AKEAIKLF 670

Query: 612 FELEP--ENPGNYVLLSKL 628
            E++    NP +   L  L
Sbjct: 671 EEMQRTGRNPDDLTFLGVL 689


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 202/582 (34%), Positives = 306/582 (52%), Gaps = 16/582 (2%)

Query: 89  GASHDS------LKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
           GAS D       +  F  ML  G  +P+  ++  ++ AC++      G  +H  +L    
Sbjct: 410 GASEDRKSFGKVVNTFHHMLLAG-IDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRR 468

Query: 143 D-MDTFVGNCLIAMYMNFGEVKAARKVFDAMW--EHSVVSWNTLISGYFKNAYAKEALVV 199
           D +++ V   L++MY   G +  A  VF  M     S+V+WN ++  Y +N  +KEA   
Sbjct: 469 DYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGA 528

Query: 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVK 259
              ML+ GV PD  S  SVL +C   +E ++ RM   L +G R   +     AL+ M+ +
Sbjct: 529 LMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCI-LESGYR---SACLETALISMHGR 584

Query: 260 CGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319
           C  + +AR VF+ M   DVV+WT+M++  A N D +    LF+ MQ EGV P+  T+ + 
Sbjct: 585 CRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATT 644

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           L  C +   L  G+ +HA   +  LE ++ VE AL++MY+ C   + +   F     +  
Sbjct: 645 LDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDL 704

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
           V WN + A     GLA++AV LFRQM +E V+P+  T ++ L      A +      H  
Sbjct: 705 VSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHAL 764

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
               G  S V V+TGL+ +Y+KCG L+ A  +F      D  +V+ + II     HG  E
Sbjct: 765 AAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGAC--DWTVVLLNAIIGALAQHGFSE 822

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
            AV +F +M Q GV+P+  T  S + AC H G+++EG   F  M E        +HY C 
Sbjct: 823 EAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACF 882

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENP 619
           VDLLGRAG+L+ A  +IR MP +    VW +LLG C + G+ ELGE  A+ + EL+P N 
Sbjct: 883 VDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNS 942

Query: 620 GNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
             +V+LS +Y A  +WKDA+  R  M ++ ++ AP  S  E+
Sbjct: 943 AAHVVLSNIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEI 984



 Score =  232 bits (592), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 186/680 (27%), Positives = 311/680 (45%), Gaps = 54/680 (7%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHL--RSSLVRAY---GHVSNVRILFDEMSER 73
           L+Q    +  +A  K  H  I  +G L  HL   + L+  Y   G +     +F +M ER
Sbjct: 31  LLQSCVDSNDLAKGKHAHELIANAG-LEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEER 89

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           +   +  ++   AQ GA   +  +F  ML      P++YT   ++ AC +     +G ++
Sbjct: 90  NVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSI 149

Query: 134 HGRVLITGFD----MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           H  +   G +      T VGN +I MY   G ++ A  VF A+ E  VVSW  +   Y +
Sbjct: 150 HAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQ 209

Query: 190 N-AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
              +  +AL +F  ML   + P+  + ++ L AC  L++   G  +H L+    LG +  
Sbjct: 210 ERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD---GTWLHSLLHEASLGFDPL 266

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSER---DVVTWTSMINGYALNGDVRNALGLFQLMQ 305
           A NAL++MY KCG    A  VF  M+ R   D+V+W +MI+     G   +A+ +F+ ++
Sbjct: 267 ASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLR 326

Query: 306 FEGVRPNSLTIGSLLSA-CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
            EG+RPNS+T+ ++L+A  +S       R  H    +     +V++  A+I MYAKC   
Sbjct: 327 LEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFF 386

Query: 365 KLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
             ++ VF R   K   + WN +L          K V  F  ML+  ++PN  +  ++L A
Sbjct: 387 SAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNA 446

Query: 424 YAILADLQQAMNIHCYLI--RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            +    L     IH  ++  R  ++    V+T L+ +Y KCGS+  A  +F E+P+  + 
Sbjct: 447 CSNSEALDFGRKIHSLILTRRRDYVE-SSVATMLVSMYGKCGSISEAELVFKEMPLPSRS 505

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG--------LL 533
           +V W+V++  Y  +   + A     EM+Q GV P+ ++FTS L +C            +L
Sbjct: 506 LVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCIL 565

Query: 534 DEGLD---LFNFMLENHQTC----------SRADH-----YTCIVDLLGRAGRLDEAYDL 575
           + G     L   ++  H  C          +  DH     +T +V          E ++L
Sbjct: 566 ESGYRSACLETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNL 625

Query: 576 IRTMPLK---PTHAVWGALLGACVIHGNVELGEVAAKWLFE--LEPENPGNYVLLSKLYS 630
            R M L+   P        L  C+    + LG+V    + E  LE +      LL+ +YS
Sbjct: 626 FRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLN-MYS 684

Query: 631 AVRRWKDAENVRDVMDEKGL 650
               W++A +  + M  + L
Sbjct: 685 NCGDWREALSFFETMKARDL 704



 Score =  231 bits (590), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 153/498 (30%), Positives = 255/498 (51%), Gaps = 19/498 (3%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           D   Y  ++++C D      G   H  +   G +   F+GNCLI MY+  G ++ A  +F
Sbjct: 24  DLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIF 83

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM-LKSGVEPDCASVVSVLPACGYLKEI 228
             M E +VVSW  LIS   +      A  +F  M L+S   P+  ++V++L AC   +++
Sbjct: 84  SKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDL 143

Query: 229 EMGRMIHELVAGGRLGKNIAA------WNALVDMYVKCGSVNEARLVFDRMSERDVVTWT 282
            +GR IH ++    LG   A+       NA+++MY KCGS+ +A  VF  + E+DVV+WT
Sbjct: 144 AIGRSIHAMI--WELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWT 201

Query: 283 SMINGYALNGDV-RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
           +M   YA       +AL +F+ M  + + PN +T  + L AC+S   L+ G  LH+   +
Sbjct: 202 AMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTS---LRDGTWLHSLLHE 258

Query: 342 QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT---VPWNAILAGCVHNGLARKA 398
            +L  + +   ALI+MY KC   + ++ VF   + ++    V WNA+++  V  G    A
Sbjct: 259 ASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDA 318

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILA-DLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
           + +FR++ +E + PN  TL ++L A A    D   A   H  +   G+L  V +   +I 
Sbjct: 319 MAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIIS 378

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
           +Y+KCG   +A  +F  I  K  D++ W+ ++            V+ F  M+ +G+ PN+
Sbjct: 379 MYAKCGFFSAAWAVFRRIRWK-CDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNK 437

Query: 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIR 577
           V+F + L+ACS+   LD G  + + +L   +    +   T +V + G+ G + EA  + +
Sbjct: 438 VSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFK 497

Query: 578 TMPLKPTHAV-WGALLGA 594
            MPL     V W  +LGA
Sbjct: 498 EMPLPSRSLVTWNVMLGA 515



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 148/544 (27%), Positives = 260/544 (47%), Gaps = 26/544 (4%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSGPLF--THLRSSLVRAYGH---VSNVRILFDEMS 71
           I ++   + ++++   +++H+ I+T    +  + + + LV  YG    +S   ++F EM 
Sbjct: 441 IAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMP 500

Query: 72  --ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
              RS   +N ++  YAQN  S ++    + ML+ G   PD  ++  V+ +C      + 
Sbjct: 501 LPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQ-GGVLPDALSFTSVLSSCY---CSQE 556

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
              L   +L +G+     +   LI+M+    E++ AR VF+ M    VVSW  ++S   +
Sbjct: 557 AQVLRMCILESGY-RSACLETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAE 615

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
           N   KE   +F  M   GV PD  ++ + L  C     + +G++IH  V    L  +IA 
Sbjct: 616 NRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAV 675

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
            NAL++MY  CG   EA   F+ M  RD+V+W  M   YA  G  + A+ LF+ MQ EGV
Sbjct: 676 ENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGV 735

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
           +P+ LT  + L+       +  G+  HA   +  L+ +V V T L+ +YAKC  +  +  
Sbjct: 736 KPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMS 795

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           +F        V  NAI+     +G + +AV++F +M  E V P+ ATL S++ A      
Sbjct: 796 LFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGM 855

Query: 430 LQQAMNIHCYLIRY-GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
           +++  +    +  Y G    +E     +D+  + G LE A +I  ++P +D + +VW+ +
Sbjct: 856 VEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFED-NTLVWTSL 914

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA------CSHGGLLDEGLDLFNF 542
           +    + G  E      + +++  + P+     SA H       C+ G   D  +D    
Sbjct: 915 LGTCKLQGDAELGERCAQRILE--LDPH----NSAAHVVLSNIYCATGKWKDADVDRKKM 968

Query: 543 MLEN 546
           + EN
Sbjct: 969 LDEN 972


>gi|414867972|tpg|DAA46529.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 993

 Score =  340 bits (872), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 208/637 (32%), Positives = 323/637 (50%), Gaps = 11/637 (1%)

Query: 34  QLHAFIITSGPLFTHLR--SSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           Q+ A ++ SG L TH+   +SL+  +G+   V +   LFD M ER    +N ++ MY+  
Sbjct: 166 QVTAHVVVSG-LLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHE 224

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
              +    + L  +R GE  PD  T   ++  C       LG  +H   + +G      +
Sbjct: 225 EV-YSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPL 283

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L+ MY   G++  A  +F  M    V+SWNT+IS Y ++    EAL     +L++  
Sbjct: 284 INALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDE 343

Query: 209 -EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
             P+  +  S L AC   + +  GR IH ++    L   +   N+L+ MY KC S+ +  
Sbjct: 344 GPPNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTE 403

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VF+ M   DVV+   +  GYA   DV NA+ +F  M+  G++PN +T+ +L   C SL 
Sbjct: 404 RVFESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLG 463

Query: 328 YLKR-GRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
            L   G  LHA+  +  L  +  +  +LI MYA C  ++ S  +F+R + K  + WNAI+
Sbjct: 464 DLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAII 523

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           A  V +G   +A++LF        + +   L   L + A LA L++ M +H   ++ G  
Sbjct: 524 AANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLD 583

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
               V    +D+Y KCG ++   K   +     +    W+ +I+GY  +G+ + A   FK
Sbjct: 584 CDSHVVNATMDMYGKCGKMDCMLKTLPDPA--HRPTQCWNTLISGYARYGYFKEAEDTFK 641

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
            MV  G +P+ VTF + L ACSH GL+D+G+D +N M           H  CIVDLLGR 
Sbjct: 642 HMVSVGQKPDYVTFVALLSACSHAGLIDKGMDYYNSMAPTFGVSPGIKHCVCIVDLLGRL 701

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           G+  EA   I  MP+ P   +W +LL +   H N+++G  AAK L EL+P +   YVLLS
Sbjct: 702 GKFAEAEKFIDEMPVLPNDLIWRSLLSSSRTHKNLDIGRKAAKNLLELDPFDDSAYVLLS 761

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            LY+   RW D + +R  M    L K PA S ++++N
Sbjct: 762 NLYATNARWVDVDKLRSHMKTIKLNKRPACSWLKLKN 798



 Score =  245 bits (626), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 175/606 (28%), Positives = 293/606 (48%), Gaps = 19/606 (3%)

Query: 35  LHAFIITSGPLFT-HLRSSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQNGA 90
           +HA    +G +   ++ ++L+  YG    V N + LF EM +R+   +  +M   + NG 
Sbjct: 66  IHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGC 125

Query: 91  SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
             ++L  +  M + G     N     V+  C  L     G+ +   V+++G      V N
Sbjct: 126 MEEALVAYRRMRKEGVMCNAN-ALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVAN 184

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
            LI M+ N   V+ A ++FD M E   +SWN +IS Y       +  +V   M    V+P
Sbjct: 185 SLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKP 244

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D  ++ S++  C     + +G  IH L     L  ++   NALV+MY   G ++EA  +F
Sbjct: 245 DVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLF 304

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNAL-GLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
             MS RDV++W +MI+ Y  +     AL  L QL+Q +   PNS+T  S L ACSS   L
Sbjct: 305 RNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEAL 364

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
             GR++HA  ++++L+  +++  +L+ MY+KCN ++ + +VF        V  N +  G 
Sbjct: 365 MNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGY 424

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ-AMNIHCYLIRYGFLSV 448
                   A+ +F  M    ++PN  T+ +L      L DL    M +H Y+ + G LS 
Sbjct: 425 AALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSD 484

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             ++  LI +Y+ CG LES+  IFS   I +K ++ W+ IIA    HG GE A+ LF + 
Sbjct: 485 EYITNSLITMYATCGDLESSTGIFSR--INNKSVISWNAIIAANVRHGRGEEAIKLFMDS 542

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
             +G + +       L + ++   L+EG+ L    ++N   C  +      +D+ G+ G+
Sbjct: 543 QHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLDCD-SHVVNATMDMYGKCGK 601

Query: 569 LDEAYDLIRTMPLKPTH---AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625
           +D    +++T+P  P H     W  L+     +G  +  E   K +  +  + P +YV  
Sbjct: 602 MD---CMLKTLP-DPAHRPTQCWNTLISGYARYGYFKEAEDTFKHMVSV-GQKP-DYVTF 655

Query: 626 SKLYSA 631
             L SA
Sbjct: 656 VALLSA 661



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 144/559 (25%), Positives = 266/559 (47%), Gaps = 19/559 (3%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK- 128
           M  R+S  + T +   A+ G    +  + L ++R  +     +    ++ AC    W++ 
Sbjct: 1   MPHRTSSSWYTAVSGCARCGLESTAFTL-LRVMRERDVPLSGFALASLVTACEHRGWQEG 59

Query: 129 --LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
              G A+H      G   + ++G  L+ +Y + G V  A+++F  M + +VVSW  ++  
Sbjct: 60  AACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVA 119

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
              N   +EALV +  M K GV  +  ++ +V+  CG L++   G  +   V    L  +
Sbjct: 120 LSSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTH 179

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           ++  N+L+ M+     V +A  +FDRM ERD ++W +MI+ Y+          +   M+ 
Sbjct: 180 VSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRH 239

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
             V+P+  T+ SL+S C+S   +  G  +H+  +   L C V +  AL++MY+    +  
Sbjct: 240 GEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDE 299

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML-VEVVEPNDATLNSLLPAYA 425
           +  +F   S++  + WN +++  V +    +A+E   Q+L  +   PN  T +S L A +
Sbjct: 300 AESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACS 359

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW 485
               L     IH  +++    +V+ +   L+ +YSKC S+E   ++F  +P    D+V  
Sbjct: 360 SPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPC--YDVVSC 417

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC-SHGGLLDEGLDLFNFML 544
           +V+  GY        A+ +F  M  +G++PN +T  +    C S G L   G+ L  ++ 
Sbjct: 418 NVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVT 477

Query: 545 ENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
              QT   +D Y    ++ +    G L+ +  +   +  K   + W A++ A V HG   
Sbjct: 478 ---QTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVIS-WNAIIAANVRHGR-- 531

Query: 603 LGEVAAKWLFELEPENPGN 621
            GE A K LF ++ ++ GN
Sbjct: 532 -GEEAIK-LF-MDSQHAGN 547


>gi|224101423|ref|XP_002312273.1| predicted protein [Populus trichocarpa]
 gi|222852093|gb|EEE89640.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 196/635 (30%), Positives = 348/635 (54%), Gaps = 18/635 (2%)

Query: 34  QLHAFIITSG----PLFTHLRSSLVRAYGHV---SNVRILFDEMSERSSFLYNTVMKMYA 86
           ++H  II  G    P    + +SL+  YG +   ++ R +FD++  R    +++++  Y 
Sbjct: 120 KVHGRIIKCGFDNDPF---IETSLLGLYGELGCLTDARKVFDDIPVRDLVSWSSIISSYV 176

Query: 87  QNGASHDSLKMFLGMLRLGEYNPDNYTYPI-VIKACTDLAWRKLGIALHGRVLITGFDMD 145
             G ++++L+MF   L + E    ++   + V +AC+ L   KL  ++HG ++    D  
Sbjct: 177 DKGEANEALEMF--RLLVNERVKLDWVIMLSVTEACSKLGILKLAKSIHGYIVRRRVDTC 234

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
             + N LI MY +  ++ +A ++F  M   + +SW ++I  Y ++ + KEA  +F  ML+
Sbjct: 235 EALDNSLIEMYSSCDDLYSAERIFVNMANKTFISWTSMIYCYNRSGWFKEAFEIFVKMLE 294

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
             VEP+  +++ VL +C  L  +  G++IH   +  G   ++      L+++Y  CG + 
Sbjct: 295 LKVEPNVITIMGVLKSCSGLSWLREGKLIHCYALKKGMTFQDDCLGPVLIELYAGCGKLG 354

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
               V   + ER+VV+W ++++  A  G    AL LF  MQ  G+  +  ++ S +SAC 
Sbjct: 355 YCEKVLLAIGERNVVSWNTLLSINARQGLFEEALVLFVQMQKRGLMLDFFSLSSAISACG 414

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
           ++  L+ GR +H + IK+ +  E  V+ ALI MY++C     ++ +F    +K +V WN+
Sbjct: 415 NVGSLQLGRQIHGYAIKRCILGE-FVKNALIGMYSRCGFSDSAYMIFNDIKQKSSVAWNS 473

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           I++G V +G + +A+ L  QM +  ++  D    S + A A +  L++   +H  LI YG
Sbjct: 474 IISGFVQSGNSIEAIHLVDQMYLNCLKITDVVFLSAIQACADMVCLEKGKWLHHKLIMYG 533

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
               + + T L D+Y+KCG L +A  +F  +   +K +V WS +I+GYGMHG  + A++ 
Sbjct: 534 VEKDLYIETALTDMYAKCGDLRTAEGVFHSMS--EKSVVSWSAMISGYGMHGRIDAAITF 591

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           F +MV+ G++PN +TF + L ACSH G +++G   F+ M  +      ++H+ C+VDLL 
Sbjct: 592 FNQMVELGIKPNHITFMNILSACSHSGSVEQGKFYFDLM-RDFGVEPSSEHFACLVDLLS 650

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
           RAG ++ AY +I +MP     +V G LL  C IH  +++     K L ++   + G+Y L
Sbjct: 651 RAGDVNGAYKIINSMPFPADASVLGNLLNGCRIHQRMDMIPEIEKDLLKIRTSDTGHYSL 710

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659
           LS +Y+ +  W   EN R +M+  G +K P +S I
Sbjct: 711 LSNIYAEIGNWAARENTRGIMERSGYKKVPGYSAI 745



 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 173/644 (26%), Positives = 317/644 (49%), Gaps = 20/644 (3%)

Query: 23  YAATKSIAGTKQLHAFI-ITSGPLFTHLRSSLVRAYGHVSNVR---ILFDEMSERSSFLY 78
           + + K++    QLHA + +T+        + L+ +Y  + +++   ++F+      SF++
Sbjct: 8   FRSCKTLRQLNQLHAHLSVTNLSNTAQASTKLIESYAQMGSIKSSTLVFETYQNPDSFMW 67

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
             ++K +  + A  +++ ++  ML   E    ++ +P V++AC       +G  +HGR++
Sbjct: 68  GVLIKCHVWSHAFEEAILLYDKML-CNEAQITSFVFPSVLRACAGFGDMFIGAKVHGRII 126

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
             GFD D F+   L+ +Y   G +  ARKVFD +    +VSW+++IS Y     A EAL 
Sbjct: 127 KCGFDNDPFIETSLLGLYGELGCLTDARKVFDDIPVRDLVSWSSIISSYVDKGEANEALE 186

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           +F  ++   V+ D   ++SV  AC  L  +++ + IH  +   R+    A  N+L++MY 
Sbjct: 187 MFRLLVNERVKLDWVIMLSVTEACSKLGILKLAKSIHGYIVRRRVDTCEALDNSLIEMYS 246

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
            C  +  A  +F  M+ +  ++WTSMI  Y  +G  + A  +F  M    V PN +TI  
Sbjct: 247 SCDDLYSAERIFVNMANKTFISWTSMIYCYNRSGWFKEAFEIFVKMLELKVEPNVITIMG 306

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECE-VIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           +L +CS L +L+ G+ +H + +K+ +  +   +   LI++YA C  +    +V     ++
Sbjct: 307 VLKSCSGLSWLREGKLIHCYALKKGMTFQDDCLGPVLIELYAGCGKLGYCEKVLLAIGER 366

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V WN +L+     GL  +A+ LF QM    +  +  +L+S + A   +  LQ    IH
Sbjct: 367 NVVSWNTLLSINARQGLFEEALVLFVQMQKRGLMLDFFSLSSAISACGNVGSLQLGRQIH 426

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            Y I+   L    V   LI +YS+CG  +SA+ IF++  IK K  V W+ II+G+   G+
Sbjct: 427 GYAIKRCILGEF-VKNALIGMYSRCGFSDSAYMIFND--IKQKSSVAWNSIISGFVQSGN 483

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY- 556
              A+ L  +M  + ++  +V F SA+ AC+    L++G  L + ++         D Y 
Sbjct: 484 SIEAIHLVDQMYLNCLKITDVVFLSAIQACADMVCLEKGKWLHHKLI---MYGVEKDLYI 540

Query: 557 -TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
            T + D+  + G L  A  +  +M  K   + W A++    +HG ++        + EL 
Sbjct: 541 ETALTDMYAKCGDLRTAEGVFHSMSEKSVVS-WSAMISGYGMHGRIDAAITFFNQMVELG 599

Query: 616 PENPGNYVLLSKLYSAVRRWKDAENVR---DVMDEKGLRKAPAH 656
            +   N++    + SA       E  +   D+M + G+  +  H
Sbjct: 600 IKP--NHITFMNILSACSHSGSVEQGKFYFDLMRDFGVEPSSEH 641



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 166/352 (47%), Gaps = 5/352 (1%)

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           +  +C  L+++     +H  ++   L     A   L++ Y + GS+  + LVF+     D
Sbjct: 7   LFRSCKTLRQLNQ---LHAHLSVTNLSNTAQASTKLIESYAQMGSIKSSTLVFETYQNPD 63

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
              W  +I  +  +     A+ L+  M     +  S    S+L AC+    +  G  +H 
Sbjct: 64  SFMWGVLIKCHVWSHAFEEAILLYDKMLCNEAQITSFVFPSVLRACAGFGDMFIGAKVHG 123

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
             IK   + +  +ET+L+ +Y +   +  + +VF     +  V W++I++  V  G A +
Sbjct: 124 RIIKCGFDNDPFIETSLLGLYGELGCLTDARKVFDDIPVRDLVSWSSIISSYVDKGEANE 183

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
           A+E+FR ++ E V+ +   + S+  A + L  L+ A +IH Y++R    +   +   LI+
Sbjct: 184 ALEMFRLLVNERVKLDWVIMLSVTEACSKLGILKLAKSIHGYIVRRRVDTCEALDNSLIE 243

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
           +YS C  L SA +IF  + + +K  + W+ +I  Y   G  + A  +F +M++  V+PN 
Sbjct: 244 MYSSCDDLYSAERIF--VNMANKTFISWTSMIYCYNRSGWFKEAFEIFVKMLELKVEPNV 301

Query: 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
           +T    L +CS    L EG  +  + L+   T         +++L    G+L
Sbjct: 302 ITIMGVLKSCSGLSWLREGKLIHCYALKKGMTFQDDCLGPVLIELYAGCGKL 353



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 140/263 (53%), Gaps = 13/263 (4%)

Query: 33  KQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           +Q+H + I    L   ++++L+  Y   G   +  ++F+++ ++SS  +N+++  + Q+G
Sbjct: 423 RQIHGYAIKRCILGEFVKNALIGMYSRCGFSDSAYMIFNDIKQKSSVAWNSIISGFVQSG 482

Query: 90  ASHDSL----KMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
            S +++    +M+L  L++      +  +   I+AC D+   + G  LH ++++ G + D
Sbjct: 483 NSIEAIHLVDQMYLNCLKI-----TDVVFLSAIQACADMVCLEKGKWLHHKLIMYGVEKD 537

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205
            ++   L  MY   G+++ A  VF +M E SVVSW+ +ISGY  +     A+  F+ M++
Sbjct: 538 LYIETALTDMYAKCGDLRTAEGVFHSMSEKSVVSWSAMISGYGMHGRIDAAITFFNQMVE 597

Query: 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265
            G++P+  + +++L AC +   +E G+   +L+    +  +   +  LVD+  + G VN 
Sbjct: 598 LGIKPNHITFMNILSACSHSGSVEQGKFYFDLMRDFGVEPSSEHFACLVDLLSRAGDVNG 657

Query: 266 ARLVFDRMS-ERDVVTWTSMING 287
           A  + + M    D     +++NG
Sbjct: 658 AYKIINSMPFPADASVLGNLLNG 680


>gi|449450916|ref|XP_004143208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 180/550 (32%), Positives = 303/550 (55%), Gaps = 7/550 (1%)

Query: 113 TYPIVIKA---CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           T PI+ K    CT       GI +H  ++  GF ++ ++   L+ MY     +  A KVF
Sbjct: 67  TPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISDAHKVF 126

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           D M   SVV+WN+L++GY +  Y   A+ +F  MLK G+EP   S+   L  C  L++ +
Sbjct: 127 DEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQLQKGD 186

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
           +G  +H +    R   N+     L+DMY KC ++ ++R VFD M  ++V TWTSMI+GYA
Sbjct: 187 LGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSMISGYA 246

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            N     A+ L + M    ++PN +T  SLLS+ S   +  + + +H   I +  E    
Sbjct: 247 RNQLPHEAMILMREMLHLNLKPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEGYESNNY 306

Query: 350 VETALIDMYAK-CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
           +   L+  Y++ C  ++   +V +       + WNA++AG  + G+  +A+E F QM  E
Sbjct: 307 IAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFIQMRRE 366

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
             + +  T  S+  A  + + L++   IH  + + G+   + V  GL+ +Y++ G++  +
Sbjct: 367 KFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARSGAIRDS 426

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
             +FS   + + D++ W+ +++G   HG GE A+ LF++M ++ ++P+  +F + L ACS
Sbjct: 427 KMVFSM--MNEHDLISWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVLTACS 484

Query: 529 HGGLLDEGLDLFNFMLENHQT-CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           H GLLD+GL+ F  M  +      + +HY  +VDL GRAG+L EA   I ++P++P  ++
Sbjct: 485 HVGLLDKGLEYFKLMRNSELVEPPKLEHYATLVDLFGRAGKLYEAEAFIESIPIEPGISI 544

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           + ALL AC+IHGN ++    AK L EL P +P  Y++LS        W DA ++R +M  
Sbjct: 545 YKALLSACLIHGNKDIAIRTAKKLLELYPYDPATYIMLSNALGRDGYWDDAASIRRLMSN 604

Query: 648 KGLRKAPAHS 657
           +G++K P  S
Sbjct: 605 RGVKKEPGFS 614



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 130/423 (30%), Positives = 206/423 (48%), Gaps = 15/423 (3%)

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           +L+ G  P    +   +  C     ++ G  +H  +       N   + ALVDMY KC S
Sbjct: 59  LLRHGSPPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWS 118

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           +++A  VFD MS   VVTW S++ GY   G    A+ LF  M  +G+ P   ++   L  
Sbjct: 119 ISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVG 178

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           CS L     G  LHA ++K      V+V T LIDMY+KC  ++ S +VF     K    W
Sbjct: 179 CSQLQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTW 238

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
            ++++G   N L  +A+ L R+ML   ++PN  T NSLL +++      +   IHC +I 
Sbjct: 239 TSMISGYARNQLPHEAMILMREMLHLNLKPNGMTYNSLLSSFSCPRHFDKCKQIHCRIIT 298

Query: 443 YGFLSVVEVSTGLIDIYSK-CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
            G+ S   ++  L+  YS+ CGSLE   K+ S I + D+  + W+ +IAG+   G GE A
Sbjct: 299 EGYESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQ--ISWNAVIAGFTNLGIGEEA 356

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561
           +  F +M +     +  TFTS   A      L+EG  +   + +   T + +     +V 
Sbjct: 357 LECFIQMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQ-NGLVS 415

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE------LE 615
           +  R+G + ++  ++ +M  +     W +LL  C  HG    GE A   LFE      ++
Sbjct: 416 MYARSGAIRDS-KMVFSMMNEHDLISWNSLLSGCAYHG---CGEEAID-LFEKMRRTCIK 470

Query: 616 PEN 618
           P+N
Sbjct: 471 PDN 473



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 246/512 (48%), Gaps = 11/512 (2%)

Query: 7   HTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH---VSN 62
           H  P T  ++ K +     +  +    Q+H+ II  G  L  ++ ++LV  YG    +S+
Sbjct: 62  HGSPPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISD 121

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
              +FDEMS  S   +N+++  Y Q G    ++ +FL ML+ G   P  ++    +  C+
Sbjct: 122 AHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKG-IEPTPFSLSGGLVGCS 180

Query: 123 DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT 182
            L    LG  LH   L   F  +  VG  LI MY     ++ +R+VFD M   +V +W +
Sbjct: 181 QLQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTS 240

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGG 241
           +ISGY +N    EA+++   ML   ++P+  +  S+L +    +  +  + IH  ++  G
Sbjct: 241 MISGYARNQLPHEAMILMREMLHLNLKPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEG 300

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
               N  A   +      CGS+ + R V   +   D ++W ++I G+   G    AL  F
Sbjct: 301 YESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECF 360

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
             M+ E    +  T  S+  A      L+ G+ +H    K      + V+  L+ MYA+ 
Sbjct: 361 IQMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARS 420

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
             ++ S  VF+  ++   + WN++L+GC ++G   +A++LF +M    ++P++ +  ++L
Sbjct: 421 GAIRDSKMVFSMMNEHDLISWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVL 480

Query: 422 PAYAILADLQQAMNIHCYLIRYGFL---SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
            A + +  L + +  +  L+R   L     +E    L+D++ + G L  A      IPI 
Sbjct: 481 TACSHVGLLDKGLE-YFKLMRNSELVEPPKLEHYATLVDLFGRAGKLYEAEAFIESIPI- 538

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           +  I ++  +++   +HG+ + A+   K++++
Sbjct: 539 EPGISIYKALLSACLIHGNKDIAIRTAKKLLE 570



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 153/301 (50%), Gaps = 13/301 (4%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY----GHVSNVRILFDEMSER 73
           L+  ++  +     KQ+H  IIT G     ++  +LV AY    G + + R +   +   
Sbjct: 276 LLSSFSCPRHFDKCKQIHCRIITEGYESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMS 335

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
               +N V+  +   G   ++L+ F+ M R  +++ D +T+  + KA    +  + G  +
Sbjct: 336 DQISWNAVIAGFTNLGIGEEALECFIQMRR-EKFDVDFFTFTSIFKAIGMTSALEEGKQI 394

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           HG V  TG+ ++  V N L++MY   G ++ ++ VF  M EH ++SWN+L+SG   +   
Sbjct: 395 HGLVYKTGYTLNLSVQNGLVSMYARSGAIRDSKMVFSMMNEHDLISWNSLLSGCAYHGCG 454

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL--GKNIAAWN 251
           +EA+ +F+ M ++ ++PD  S ++VL AC ++  ++ G    +L+    L     +  + 
Sbjct: 455 EEAIDLFEKMRRTCIKPDNTSFLAVLTACSHVGLLDKGLEYFKLMRNSELVEPPKLEHYA 514

Query: 252 ALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGD----VRNALGLFQLMQF 306
            LVD++ + G + EA    + +  E  +  + ++++   ++G+    +R A  L +L  +
Sbjct: 515 TLVDLFGRAGKLYEAEAFIESIPIEPGISIYKALLSACLIHGNKDIAIRTAKKLLELYPY 574

Query: 307 E 307
           +
Sbjct: 575 D 575


>gi|357516987|ref|XP_003628782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522804|gb|AET03258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1002

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 204/644 (31%), Positives = 339/644 (52%), Gaps = 44/644 (6%)

Query: 29  IAGTKQLHAFIITSGPLF---THLRSSLVRAYGH---VSNVRILFDEMS--ERSSFLYNT 80
           I   + +H F++  G  F    ++ +SLV  YG    + +   +FDEM   +R+  ++N+
Sbjct: 223 IGFGRGIHGFVVKMGNEFDGCVYVATSLVDMYGKCGVLEDAEKVFDEMPNRKRNDVVWNS 282

Query: 81  VMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT 140
           ++  Y QNG + +++ +F  M   G   P   +      AC +L   + G   H  V++ 
Sbjct: 283 MIVGYVQNGMNVEAVGLFEKMRFEGGVEPSEVSLSGFFSACANLEAVEEGKQGHALVILM 342

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE-HSVVSWNTLISGYFKNAYAKEALVV 199
           GF+++  +G+ ++  Y   G ++    VF +M      V+WN +IS Y +    ++AL +
Sbjct: 343 GFELNYVLGSSIMNFYSKVGLIEEVELVFRSMAVLKDEVTWNLMISSYVQFGMFEKALEM 402

Query: 200 FDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
             WM +   +  DC ++ S+L      +++++G+ +H          ++A  + ++DMY 
Sbjct: 403 CHWMREEENLRFDCVTLSSLLALAADTRDVKLGKKLHGFCIRNEFYSDMAVLSGVLDMYA 462

Query: 259 KCGSVNEARLVFDRM-SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
           KCG ++ AR VF     ++D+V W +M+   A  G    AL LF  MQ E V PN ++  
Sbjct: 463 KCGIMDCARGVFHFAGKKKDIVLWNTMLAACAEKGLSGEALKLFFQMQMESVPPNVVSWN 522

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           SL+       + + G+ + A                  DM+++  L  ++          
Sbjct: 523 SLIFG-----FFRNGQVVEAQ-----------------DMFSEMQLSGVT---------P 551

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             + W  +++G   NGL  +A  +F+QM    + PN  ++ S L A   +A L    +IH
Sbjct: 552 NLITWTTMISGLAQNGLGYEASRVFQQMQGAGMRPNSISITSALSACTNMALLNYGRSIH 611

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            Y++R      ++++T +ID+Y+KCG+L+ A  +F  I    K++ V++ +I+ Y  HG 
Sbjct: 612 GYVMRNFMSFSLQITTSIIDMYAKCGNLDDAKFVF--IICSTKELPVYNAMISAYASHGK 669

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
              A++LF+E+V+ G+ P+ +TFTS L ACSHG LL EGL+LF +M+   Q      HY 
Sbjct: 670 SAEALALFQELVKQGIMPDHITFTSVLSACSHGRLLKEGLELFKYMVCELQMKPSEKHYG 729

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617
           C+V LL   G+LDEA  +I TMP  P   + G+LL AC  +   EL    AKWL ++EP 
Sbjct: 730 CLVKLLTNDGQLDEALRIILTMPSPPDAHILGSLLAACGQNHETELANYIAKWLLKVEPN 789

Query: 618 NPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           NPGNYV LS +Y+A+ +W +  N+R  M EKGL+K P  S IEV
Sbjct: 790 NPGNYVALSNVYAALGKWDEVSNIRGFMKEKGLKKIPGCSWIEV 833



 Score =  245 bits (626), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 179/613 (29%), Positives = 301/613 (49%), Gaps = 57/613 (9%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFT---HLRSSLVRAYGHV 60
           P H   P    +  +L+Q     + ++   Q+HA +I  G  ++    + S LV  Y   
Sbjct: 96  PQH--TPIGPDIYGELLQGCVYARDLSLGLQIHAHLIKKGSSYSTNEFVESKLVILYAKC 153

Query: 61  SNVRI----LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           +  R+      + +  ++ F Y  ++ + A+NG   ++L  ++ M+  G + PDN+  P 
Sbjct: 154 NLTRVAVHFFRNVVKNQNLFSYAAIVGLQARNGLYKEALLSYVEMMEKG-FCPDNFVVPN 212

Query: 117 VIKACTDLAWRKLGIALHGRVLITG--FDMDTFVGNCLIAMYMNFGEVKAARKVFDAM-- 172
            +KAC  L W   G  +HG V+  G  FD   +V   L+ MY   G ++ A KVFD M  
Sbjct: 213 GLKACGGLRWIGFGRGIHGFVVKMGNEFDGCVYVATSLVDMYGKCGVLEDAEKVFDEMPN 272

Query: 173 WEHSVVSWNTLISGYFKNAYAKEALVVFDWM-LKSGVEPDCASVVSVLPACGYLKEIEMG 231
            + + V WN++I GY +N    EA+ +F+ M  + GVEP   S+     AC  L+ +E G
Sbjct: 273 RKRNDVVWNSMIVGYVQNGMNVEAVGLFEKMRFEGGVEPSEVSLSGFFSACANLEAVEEG 332

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-RDVVTWTSMINGYAL 290
           +  H LV       N    +++++ Y K G + E  LVF  M+  +D VTW  MI+ Y  
Sbjct: 333 KQGHALVILMGFELNYVLGSSIMNFYSKVGLIEEVELVFRSMAVLKDEVTWNLMISSYVQ 392

Query: 291 NGDVRNALGLFQLM-QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            G    AL +   M + E +R + +T+ SLL+  +    +K G+ LH + I+     ++ 
Sbjct: 393 FGMFEKALEMCHWMREEENLRFDCVTLSSLLALAADTRDVKLGKKLHGFCIRNEFYSDMA 452

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKK-TVPWNAILAGCVHNGLARKAVELFRQMLVE 408
           V + ++DMYAKC ++  +  VF    KKK  V WN +LA C   GL+ +A++LF QM +E
Sbjct: 453 VLSGVLDMYAKCGIMDCARGVFHFAGKKKDIVLWNTMLAACAEKGLSGEALKLFFQMQME 512

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            V PN  + NSL+                     +GF               + G +  A
Sbjct: 513 SVPPNVVSWNSLI---------------------FGFF--------------RNGQVVEA 537

Query: 469 HKIFSEIPIK--DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
             +FSE+ +     +++ W+ +I+G   +G G  A  +F++M  +G++PN ++ TSAL A
Sbjct: 538 QDMFSEMQLSGVTPNLITWTTMISGLAQNGLGYEASRVFQQMQGAGMRPNSISITSALSA 597

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           C++  LL+ G  +  +++ N  + S     T I+D+  + G LD+A  +      K    
Sbjct: 598 CTNMALLNYGRSIHGYVMRNFMSFS-LQITTSIIDMYAKCGNLDDAKFVFIICSTKEL-P 655

Query: 587 VWGALLGACVIHG 599
           V+ A++ A   HG
Sbjct: 656 VYNAMISAYASHG 668


>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
 gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
          Length = 1260

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 190/574 (33%), Positives = 312/574 (54%), Gaps = 10/574 (1%)

Query: 93   DSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCL 152
            +SL +F  M R G + P+N+T+P V KAC  LA       +H  ++ + F  D FVG   
Sbjct: 641  ESLLLFREMKR-GGFEPNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTAT 699

Query: 153  IAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDC 212
            + M++    V  A KVF+ M E    +WN ++SG+ ++ +  +A  +F  M  + + PD 
Sbjct: 700  VDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDS 759

Query: 213  ASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI--AAWNALVDMYVKCGSVNEARLVF 270
             +V++++ +  + K +++   +H    G RLG ++     N  +  Y KCG ++ A+LVF
Sbjct: 760  VTVMTLIQSASFEKSLKLLEAMH--AVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVF 817

Query: 271  DRMS--ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
            + +   +R VV+W SM   Y++ G+  +A GL+ LM  E  +P+  T  +L ++C +   
Sbjct: 818  EAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPET 877

Query: 329  LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
            L +GR +H+  I    + ++      I MY+K      +  +F   + +  V W  +++G
Sbjct: 878  LTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISG 937

Query: 389  CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF-LS 447
                G   +A+ LF  M+    +P+  TL SL+        L+    I      YG    
Sbjct: 938  YAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRD 997

Query: 448  VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
             V +   LID+YSKCGS+  A  IF   P  +K +V W+ +IAGY ++G    A+ LF +
Sbjct: 998  NVMICNALIDMYSKCGSIHEARDIFDNTP--EKTVVTWTTMIAGYALNGIFLEALKLFSK 1055

Query: 508  MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
            M+    +PN +TF + L AC+H G L++G + F+ M + +      DHY+C+VDLLGR G
Sbjct: 1056 MIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKG 1115

Query: 568  RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
            +L+EA +LIR M  KP   +WGALL AC IH NV++ E AA+ LF LEP+    YV ++ 
Sbjct: 1116 KLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMAN 1175

Query: 628  LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            +Y+A   W     +R +M ++ ++K P  S+I+V
Sbjct: 1176 IYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQV 1209



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/433 (28%), Positives = 204/433 (47%), Gaps = 19/433 (4%)

Query: 176  SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
            SV +WN  I          E+L++F  M + G EP+  +   V  AC  L ++    M+H
Sbjct: 622  SVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVH 681

Query: 236  ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
              +       ++    A VDM+VKC SV+ A  VF+RM ERD  TW +M++G+  +G   
Sbjct: 682  AHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTD 741

Query: 296  NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
             A  LF+ M+   + P+S+T+ +L+ + S    LK   ++HA  I+  ++ +V V    I
Sbjct: 742  KAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWI 801

Query: 356  DMYAKC---NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
              Y KC   +  KL F+   R   +  V WN++       G A  A  L+  ML E  +P
Sbjct: 802  STYGKCGDLDSAKLVFEAIDR-GDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKP 860

Query: 413  NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
            + +T  +L  +      L Q   IH + I  G    +E     I +YSK     SA  +F
Sbjct: 861  DLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLF 920

Query: 473  SEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532
                +  +  V W+V+I+GY   G  + A++LF  M++SG +P+ VT  S +  C   G 
Sbjct: 921  D--IMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGS 978

Query: 533  LDEG------LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
            L+ G       D++    +N   C+       ++D+  + G + EA D+    P K T  
Sbjct: 979  LETGKWIDARADIYGCKRDNVMICN------ALIDMYSKCGSIHEARDIFDNTPEK-TVV 1031

Query: 587  VWGALLGACVIHG 599
             W  ++    ++G
Sbjct: 1032 TWTTMIAGYALNG 1044



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 130/441 (29%), Positives = 217/441 (49%), Gaps = 18/441 (4%)

Query: 16   VIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH---VSNVRILFD--E 69
            V+ L+Q  +  KS+   + +HA  I  G  +   + ++ +  YG    + + +++F+  +
Sbjct: 762  VMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAID 821

Query: 70   MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
              +R+   +N++ K Y+  G + D+  ++  MLR  E+ PD  T+  +  +C +      
Sbjct: 822  RGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLR-EEFKPDLSTFINLAASCQNPETLTQ 880

Query: 130  GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
            G  +H   +  G D D    N  I+MY    +  +AR +FD M   + VSW  +ISGY +
Sbjct: 881  GRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAE 940

Query: 190  NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA-GGRLGKNIA 248
                 EAL +F  M+KSG +PD  +++S++  CG    +E G+ I       G    N+ 
Sbjct: 941  KGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVM 1000

Query: 249  AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
              NAL+DMY KCGS++EAR +FD   E+ VVTWT+MI GYALNG    AL LF  M    
Sbjct: 1001 ICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLD 1060

Query: 309  VRPNSLTIGSLLSACSSLYYLKRG-RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
             +PN +T  ++L AC+    L++G    H      N+   +   + ++D+  +   ++ +
Sbjct: 1061 YKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEA 1120

Query: 368  FQVFARTSKKKTVP-WNAILAGC-VHNG--LARKAVE----LFRQMLVEVVE-PNDATLN 418
             ++    S K     W A+L  C +H    +A +A E    L  QM    VE  N     
Sbjct: 1121 LELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAA 1180

Query: 419  SLLPAYAILADLQQAMNIHCY 439
             +   +A +  + +  NI  Y
Sbjct: 1181 GMWDGFARIRSIMKQRNIKKY 1201



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 160/367 (43%), Gaps = 37/367 (10%)

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
           V  W   I       D   +L LF+ M+  G  PN+ T   +  AC+ L  +     +HA
Sbjct: 623 VNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHA 682

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
             IK     +V V TA +DM+ KCN V  + +VF R  ++    WNA+L+G   +G   K
Sbjct: 683 HLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDK 742

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
           A  LFR+M +  + P+  T+ +L+ + +    L+    +H   IR G    V V+   I 
Sbjct: 743 AFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANTWIS 802

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
            Y KCG L+SA  +F  I   D+ +V W+ +   Y + G    A  L+  M++   +P+ 
Sbjct: 803 TYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDL 862

Query: 518 VTFTSALHAC------SHGGLL---------DEGLDLFNFML----ENHQTCSRA----- 553
            TF +   +C      + G L+         D+ ++  N  +    ++  TCS       
Sbjct: 863 STFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDI 922

Query: 554 -DHYTCI-----VDLLGRAGRLDEAYDLIRTM---PLKPTHAVWGALLGACVIHGNVELG 604
               TC+     +      G +DEA  L   M     KP      +L+  C   G++E G
Sbjct: 923 MTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETG 982

Query: 605 EVAAKWL 611
               KW+
Sbjct: 983 ----KWI 985


>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
 gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
          Length = 698

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 209/612 (34%), Positives = 325/612 (53%), Gaps = 14/612 (2%)

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           ++  R +FDE+    +  +N+++  +   GA  D+ ++   M   G      +     ++
Sbjct: 45  LAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHARG-LTASTFALGSALR 103

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           +       +LG  L    + +G   + F  + L+ +Y   G +  AR+VFD M   + VS
Sbjct: 104 SAAAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDARRVFDGMPVRNTVS 163

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           WN LI+GY ++    +A+ +F  M +  + PD A+  ++L          + + +H  +A
Sbjct: 164 WNALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLATVEGPSWYSLMQQLHGKIA 223

Query: 240 --GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
             G  LG  +   NA +  Y +CG+  ++R +FD +  RD+++W SM+  YA +G    A
Sbjct: 224 KYGSALG--LVVLNAAITAYSQCGAFADSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEA 281

Query: 298 LGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKR-GRSLHAWTIKQNLECEVIVETALI 355
           +  F ++M+  GV+P+  +  S++S CS      R GRS+H+  +K  LE    V  A+I
Sbjct: 282 MRFFVRMMRESGVQPDMYSFTSVVSVCSEHGCDDRQGRSIHSLVVKIGLEGVTHVCNAMI 341

Query: 356 DMYAKCN---LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412
            MY +     +++ +++ F     K  V WN++L G  H+GL+  A+  FR M  E V  
Sbjct: 342 AMYTRFTENCMMEDAYKCFDSLVFKDAVSWNSMLTGYSHHGLSSDALRFFRFMRAENVST 401

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
           ++  L++ L + + LA L+    +H  +I+ GF S   VS+ LI +YSKCG +  A K F
Sbjct: 402 DEFALSAALRSCSDLAVLRLGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSF 461

Query: 473 SEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
            E    DK   V W+ ++ GY  HG  +T   LF EM+   V  + VTF + L A SHGG
Sbjct: 462 EE---ADKGSSVPWNSMMFGYAQHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTAYSHGG 518

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
           L+DEG ++ N M   ++   R +HY C VDL GRAG+LD+A +LI +MP +P   VW  L
Sbjct: 519 LVDEGSEILNSMETRYKIPLRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAMVWMTL 578

Query: 592 LGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651
           LGAC IHGN+EL    A  LF  EP     YVLLS +YS    W D   V+ VM  +GL 
Sbjct: 579 LGACRIHGNMELASDVASHLFVAEPRQHSTYVLLSSMYSGRGMWSDRATVQKVMKNRGLS 638

Query: 652 KAPAHSLIEVRN 663
           K P  S IEV+N
Sbjct: 639 KVPGWSWIEVKN 650


>gi|449496714|ref|XP_004160205.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g11290-like [Cucumis sativus]
          Length = 616

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 180/550 (32%), Positives = 302/550 (54%), Gaps = 7/550 (1%)

Query: 113 TYPIVIKA---CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           T PI+ K    CT       GI +H  ++  GF ++ ++   L+ MY     +  A KVF
Sbjct: 67  TPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISDAHKVF 126

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           D M   SVV+WN+L++GY +  Y   A+ +F  MLK G+EP   S+   L  C  L++ +
Sbjct: 127 DEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVGCSQLQKGD 186

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
           +G  +H +    R   N+     L+DMY KC ++ ++R VFD M  ++V TWTSMI+GYA
Sbjct: 187 LGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTSMISGYA 246

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            N     A+ L + M    + PN +T  SLLS+ S   +  + + +H   I +  E    
Sbjct: 247 RNQLPHEAMXLMREMLHLNLEPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEGYESNNY 306

Query: 350 VETALIDMYAK-CNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
           +   L+  Y++ C  ++   +V +       + WNA++AG  + G+  +A+E F QM  E
Sbjct: 307 IAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECFIQMRRE 366

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
             + +  T  S+  A  + + L++   IH  + + G+   + V  GL+ +Y++ G++  +
Sbjct: 367 KFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARSGAIRDS 426

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
             +FS   + + D++ W+ +++G   HG GE A+ LF++M ++ ++P+  +F + L ACS
Sbjct: 427 KMVFSM--MNEHDLISWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVLTACS 484

Query: 529 HGGLLDEGLDLFNFMLENHQT-CSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAV 587
           H GLLD+GL+ F  M  +      + +HY  +VDL GRAG+L EA   I ++P++P  ++
Sbjct: 485 HVGLLDKGLEYFKLMRNSELVEPPKLEHYATLVDLFGRAGKLYEAEAFIESIPIEPGISI 544

Query: 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647
           + ALL AC+IHGN ++    AK L EL P +P  Y++LS        W DA ++R +M  
Sbjct: 545 YKALLSACLIHGNKDIAIRTAKKLLELYPYDPATYIMLSNALGRDGYWDDAASIRRLMSN 604

Query: 648 KGLRKAPAHS 657
           +G++K P  S
Sbjct: 605 RGVKKEPGFS 614



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 131/423 (30%), Positives = 206/423 (48%), Gaps = 15/423 (3%)

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           +L+ G  P    +   +  C     ++ G  +H  +       N   + ALVDMY KC S
Sbjct: 59  LLRHGSPPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWS 118

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322
           +++A  VFD MS   VVTW S++ GY   G    A+ LF  M  +G+ P   ++   L  
Sbjct: 119 ISDAHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKGIEPTPFSLSGGLVG 178

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           CS L     G  LHA ++K      V+V T LIDMY+KC  ++ S +VF     K    W
Sbjct: 179 CSQLQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTW 238

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442
            ++++G   N L  +A+ L R+ML   +EPN  T NSLL +++      +   IHC +I 
Sbjct: 239 TSMISGYARNQLPHEAMXLMREMLHLNLEPNGMTYNSLLSSFSCPRHFDKCKQIHCRIIT 298

Query: 443 YGFLSVVEVSTGLIDIYSK-CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
            G+ S   ++  L+  YS+ CGSLE   K+ S I + D+  + W+ +IAG+   G GE A
Sbjct: 299 EGYESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQ--ISWNAVIAGFTNLGIGEEA 356

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561
           +  F +M +     +  TFTS   A      L+EG  +   + +   T + +     +V 
Sbjct: 357 LECFIQMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQ-NGLVS 415

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE------LE 615
           +  R+G + ++  ++ +M  +     W +LL  C  HG    GE A   LFE      ++
Sbjct: 416 MYARSGAIRDS-KMVFSMMNEHDLISWNSLLSGCAYHG---CGEEAID-LFEKMRRTCIK 470

Query: 616 PEN 618
           P+N
Sbjct: 471 PDN 473



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 131/512 (25%), Positives = 245/512 (47%), Gaps = 11/512 (2%)

Query: 7   HTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGH---VSN 62
           H  P T  ++ K +     +  +    Q+H+ II  G  L  ++ ++LV  YG    +S+
Sbjct: 62  HGSPPTPPILTKTISICTKSTLLDFGIQVHSTIIKLGFSLNPYIFTALVDMYGKCWSISD 121

Query: 63  VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT 122
              +FDEMS  S   +N+++  Y Q G    ++ +FL ML+ G   P  ++    +  C+
Sbjct: 122 AHKVFDEMSCPSVVTWNSLVTGYLQAGYPLMAVSLFLEMLKKG-IEPTPFSLSGGLVGCS 180

Query: 123 DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT 182
            L    LG  LH   L   F  +  VG  LI MY     ++ +R+VFD M   +V +W +
Sbjct: 181 QLQKGDLGSQLHAMSLKLRFSSNVVVGTGLIDMYSKCCNLQDSRRVFDIMLNKNVFTWTS 240

Query: 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGG 241
           +ISGY +N    EA+ +   ML   +EP+  +  S+L +    +  +  + IH  ++  G
Sbjct: 241 MISGYARNQLPHEAMXLMREMLHLNLEPNGMTYNSLLSSFSCPRHFDKCKQIHCRIITEG 300

Query: 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF 301
               N  A   +      CGS+ + R V   +   D ++W ++I G+   G    AL  F
Sbjct: 301 YESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMSDQISWNAVIAGFTNLGIGEEALECF 360

Query: 302 QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC 361
             M+ E    +  T  S+  A      L+ G+ +H    K      + V+  L+ MYA+ 
Sbjct: 361 IQMRREKFDVDFFTFTSIFKAIGMTSALEEGKQIHGLVYKTGYTLNLSVQNGLVSMYARS 420

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
             ++ S  VF+  ++   + WN++L+GC ++G   +A++LF +M    ++P++ +  ++L
Sbjct: 421 GAIRDSKMVFSMMNEHDLISWNSLLSGCAYHGCGEEAIDLFEKMRRTCIKPDNTSFLAVL 480

Query: 422 PAYAILADLQQAMNIHCYLIRYGFL---SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
            A + +  L + +  +  L+R   L     +E    L+D++ + G L  A      IPI 
Sbjct: 481 TACSHVGLLDKGLE-YFKLMRNSELVEPPKLEHYATLVDLFGRAGKLYEAEAFIESIPI- 538

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           +  I ++  +++   +HG+ + A+   K++++
Sbjct: 539 EPGISIYKALLSACLIHGNKDIAIRTAKKLLE 570



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 153/301 (50%), Gaps = 13/301 (4%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY----GHVSNVRILFDEMSER 73
           L+  ++  +     KQ+H  IIT G     ++  +LV AY    G + + R +   +   
Sbjct: 276 LLSSFSCPRHFDKCKQIHCRIITEGYESNNYIAVTLVTAYSECCGSLEDYRKVCSNIRMS 335

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
               +N V+  +   G   ++L+ F+ M R  +++ D +T+  + KA    +  + G  +
Sbjct: 336 DQISWNAVIAGFTNLGIGEEALECFIQMRR-EKFDVDFFTFTSIFKAIGMTSALEEGKQI 394

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           HG V  TG+ ++  V N L++MY   G ++ ++ VF  M EH ++SWN+L+SG   +   
Sbjct: 395 HGLVYKTGYTLNLSVQNGLVSMYARSGAIRDSKMVFSMMNEHDLISWNSLLSGCAYHGCG 454

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL--GKNIAAWN 251
           +EA+ +F+ M ++ ++PD  S ++VL AC ++  ++ G    +L+    L     +  + 
Sbjct: 455 EEAIDLFEKMRRTCIKPDNTSFLAVLTACSHVGLLDKGLEYFKLMRNSELVEPPKLEHYA 514

Query: 252 ALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGD----VRNALGLFQLMQF 306
            LVD++ + G + EA    + +  E  +  + ++++   ++G+    +R A  L +L  +
Sbjct: 515 TLVDLFGRAGKLYEAEAFIESIPIEPGISIYKALLSACLIHGNKDIAIRTAKKLLELYPY 574

Query: 307 E 307
           +
Sbjct: 575 D 575


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 206/649 (31%), Positives = 332/649 (51%), Gaps = 46/649 (7%)

Query: 51  SSLVRAYGH---VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           +S+V  Y H   +S  R LFD+M ER+S  +  ++  Y       ++  +F+ M R    
Sbjct: 299 NSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVA- 357

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            PD   + +V+ A T L   +L  +L    + TG++ D  VG+ ++  Y   G +  A  
Sbjct: 358 RPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMH 417

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
            F+ M E +  SW T+I+ + +     +A+ +++ + +  V    A+  +++ A   +  
Sbjct: 418 FFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV----ATKTAMMTAYAQVGR 473

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           I+  R+I + +    L  N+ AWNA++  Y + G + EA+ +F +M  ++  +W +MI G
Sbjct: 474 IQKARLIFDEI----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAG 529

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           +  N + R AL L   +   G  P+  +  S LSAC+++  ++ GR +H+  IK   +  
Sbjct: 530 FVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFN 589

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN--------------- 392
             V   LI MYAKC  V+    VF     K TV WN++++G   N               
Sbjct: 590 SYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPK 649

Query: 393 ----------------GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
                           G    A++LF  ML   ++PN  T+ SLL A   L  ++     
Sbjct: 650 RDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQF 709

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           H  + + GF + + V   LI +Y KCG  E    +F E+P  + D++ W+ ++ G   +G
Sbjct: 710 HALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMP--EHDLITWNAVLVGCAQNG 766

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
            G+ A+ +F++M   G+ P++++F   L ACSH GL+DEG   FN M + +       HY
Sbjct: 767 LGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHY 826

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
           TC+VDLLGRAG L EA  LI  MP+KP   +W ALLGAC IH NVELG+  A+ LF++  
Sbjct: 827 TCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTK 886

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
                YVLLS L+++   W     +R +M ++GL K P  S I+V+N L
Sbjct: 887 PKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNKL 935



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 137/545 (25%), Positives = 243/545 (44%), Gaps = 107/545 (19%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V   R +F+EM +R    +N+++  Y+QNG   ++  +F                   
Sbjct: 185 GRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLF------------------- 225

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGN------CLIAMYMNFGEVKAARKVFDA 171
                                      D FVG        L+  Y   G ++ AR+VF++
Sbjct: 226 ---------------------------DAFVGKNIRTWTILLTGYAKEGRIEEAREVFES 258

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           M E +VVSWN +ISGY +N   K A  +FD M      P+                    
Sbjct: 259 MTERNVVSWNAMISGYVQNGDLKNARKLFDEM------PE-------------------- 292

Query: 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291
                        KN+A+WN++V  Y  C  ++EAR +FD+M ER+ V+W  MI+GY   
Sbjct: 293 -------------KNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHI 339

Query: 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE 351
            D   A  +F  M     RP+      +LSA + L  L+   SL    IK   E +V+V 
Sbjct: 340 SDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVG 399

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
           +A+++ Y +   + L+   F    ++    W  ++A     G    A++L+ +    V E
Sbjct: 400 SAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYER----VPE 455

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
              AT  +++ AYA +  +Q+A  I   ++    ++   +  G    Y++ G L+ A  +
Sbjct: 456 QTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAG----YTQNGMLKEAKDL 511

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F ++P+K+     W+ +IAG+  +     A+ L  E+ +SG  P++ +FTSAL AC++ G
Sbjct: 512 FQKMPVKNS--ASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIG 569

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTC--IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589
            ++ G  + +  +   +T  + + Y    ++ +  + G +++   + RT+ +K T   W 
Sbjct: 570 DVEIGRVIHSLAI---KTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDT-VSWN 625

Query: 590 ALLGA 594
           +L+  
Sbjct: 626 SLISG 630


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 205/562 (36%), Positives = 319/562 (56%), Gaps = 35/562 (6%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMYM--NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
           LH ++++ G   +T     LI+     + G+++ A+++FD + + +   +N+LI GY  +
Sbjct: 7   LHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYSNS 66

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
               +A+++F  M+ SG+ P+  ++  VL ACG         ++H L     +G  +   
Sbjct: 67  DDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVFVQ 126

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           NAL+ +YV CG ++ AR +FD ++++ +V+W SMI GYA  G+ + A  LF+ M+  G+ 
Sbjct: 127 NALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMREWGME 186

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC-NL------ 363
           P+  T  +LLS CS    L  GR +H       ++ ++IV  AL+DMYAKC NL      
Sbjct: 187 PDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHSAQAI 246

Query: 364 ------------------------VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAV 399
                                   ++++ Q+F +   K  V WN++++  +  G  R+A+
Sbjct: 247 FDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREAL 306

Query: 400 ELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459
           +LF +M    V P++ATL S+L A + L DL     IH Y++       V +   LID+Y
Sbjct: 307 DLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMY 366

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
           +KCG + +A  IF E+P   K++V W+VII    +HG G  A+ LF+EM   G  P+E+T
Sbjct: 367 AKCGPVVTALDIFLEMP--GKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEIT 424

Query: 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
            T  L ACSH GL+D GL  F+ M   ++     +HY C+VDLLGR G L EA +LI  M
Sbjct: 425 LTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRM 484

Query: 580 PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAE 639
           P+KP   VWGALLGAC IHGNVE+G+   K L ELEP + G YVL+S +Y   +RW+D +
Sbjct: 485 PMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWEDVK 544

Query: 640 NVRDVMDEKGLRKAPAHSLIEV 661
            +R +M ++G++K  A S IE+
Sbjct: 545 KIRKLMIDRGIKKGRAISSIEI 566



 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 158/523 (30%), Positives = 268/523 (51%), Gaps = 50/523 (9%)

Query: 31  GTKQLHAFIITSG------PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKM 84
           G K LHA II  G       L   +    V   G +   + +FD++ + + F+YN++++ 
Sbjct: 3   GLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRG 62

Query: 85  YAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDM 144
           Y+ +    D++ +F  M+  G  +P+ +T P V+KAC   +     + +HG  +  G   
Sbjct: 63  YSNSDDPIDAVLLFRRMICSG-LSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGS 121

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
             FV N LIA+Y+  G +  ARK+FD + + ++VSWN++I GY      KEA ++F  M 
Sbjct: 122 LVFVQNALIAVYVVCGLIHCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMR 181

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
           + G+EPD  + V++L  C   +++++GR +H  +    +  +I   NALVDMY KCG+++
Sbjct: 182 EWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLH 241

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDV------------------------------ 294
            A+ +FDR  E++VV+WTSMI+ YA +G +                              
Sbjct: 242 SAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQ 301

Query: 295 -RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
            R AL LF  M+   V P+  T+ S+L+ACS L  L  G+ +H + +       V +  +
Sbjct: 302 YREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNS 361

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           LIDMYAKC  V  +  +F     K  V WN I+     +G   +A++LF +M  +   P+
Sbjct: 362 LIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPD 421

Query: 414 DATLNSLLPA--YAILADLQQAMNIHCYLIRYGFL----SVVEVSTGLIDIYSKCGSLES 467
           + TL  LL A  ++ L D    M ++ Y  R G +      +E    ++D+  + G L  
Sbjct: 422 EITLTGLLSACSHSGLVD----MGLY-YFDRMGVIYRVPREIEHYACMVDLLGRGGLLGE 476

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           A ++   +P+K  D+VVW  ++    +HG+ E    + K++++
Sbjct: 477 AIELIGRMPMK-PDVVVWGALLGACRIHGNVEIGKQILKQLLE 518


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 199/617 (32%), Positives = 329/617 (53%), Gaps = 12/617 (1%)

Query: 52  SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN 111
           S+  ++  V     +FD M+E     +N ++  YA +G   +SL+ F  M  L  +N  N
Sbjct: 340 SMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHL--HNETN 397

Query: 112 YT----YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
            T       V  +  +L W   G  +HG V+  G D +  + N L+ +Y   G  + A  
Sbjct: 398 STTLSSLLSVCSSVDNLKW---GRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAEL 454

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VF AM E  ++SWN++++ Y ++    + L +   +L+ G   +  +  S L AC   + 
Sbjct: 455 VFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPEC 514

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +   +++H L+        +   NALV MY K G + EA+ V   M + D VTW ++I G
Sbjct: 515 LIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGG 574

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY-YLKRGRSLHAWTIKQNLEC 346
           +A N +   A+  ++L++ +G+  N +T+ S+L ACS+    LK G  +HA  +    E 
Sbjct: 575 HAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFES 634

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
           +  V+ +LI MYAKC  +  S  +F     K  + WNA++A   H+G   +A+++F +M 
Sbjct: 635 DDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMR 694

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
              V  +  + +  L A A LA L++   +H  +I+ GF S + V+   +D+Y KCG + 
Sbjct: 695 NVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMH 754

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
              K+  + PI ++  + W+++I+ +  HG  + A   F EM++ G +P+ VTF S L A
Sbjct: 755 DVLKMLPQ-PI-NRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSA 812

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           C+HGGL+DEGL  ++ M          +H  CI+DLLGR+GRL  A   I+ MP+ P   
Sbjct: 813 CNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDL 872

Query: 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646
            W +LL AC IHGN+EL    A+ L EL+P +   YVL S + +   +W+D EN+R  M 
Sbjct: 873 AWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMG 932

Query: 647 EKGLRKAPAHSLIEVRN 663
              ++K PA S +++++
Sbjct: 933 SNNIKKQPACSWVKLKD 949



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 175/608 (28%), Positives = 300/608 (49%), Gaps = 27/608 (4%)

Query: 34  QLHAFIITSGPLF-THLRSSLVRAYGHVS---NVRILFDEMSERSSFLYNTVMKMYAQNG 89
           Q+H F++ +G L   ++ ++LV  YG +    N + LF+EM + +   + ++M  Y+ +G
Sbjct: 217 QVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSG 276

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              + L ++  M + G     N T+  V  +C  L  + LG  + G ++  GF+    V 
Sbjct: 277 NPGEVLNVYQRMRQEGVSGNQN-TFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVA 335

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N LI+M+ +F  V+ A  VFD M E  ++SWN +IS Y  +   +E+L  F WM     E
Sbjct: 336 NSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNE 395

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269
            +  ++ S+L  C  +  ++ GR IH LV    L  N+   N L+ +Y + G   +A LV
Sbjct: 396 TNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELV 455

Query: 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
           F  M+ERD+++W SM+  Y  +G   + L +   +   G   N +T  S L+ACS+   L
Sbjct: 456 FQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECL 515

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
              + +HA  I       +IV  AL+ MY K  ++  + +V     +   V WNA++ G 
Sbjct: 516 IESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGH 575

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD-LQQAMNIHCYLIRYGFLSV 448
             N    +AV+ ++ +  + +  N  T+ S+L A +   D L+  M IH +++  GF S 
Sbjct: 576 AENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESD 635

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             V   LI +Y+KCG L S++ IF    + +K  + W+ ++A    HG GE A+ +F EM
Sbjct: 636 DYVKNSLITMYAKCGDLNSSNYIFD--GLGNKSPITWNAMVAANAHHGCGEEALKIFGEM 693

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDL------FNFMLENHQTCSRADHYTCIVDL 562
              GV  ++ +F+  L A ++  +L+EG  L        F  + H T +  D Y      
Sbjct: 694 RNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMY------ 747

Query: 563 LGRAGRLDEAYDLIRTM--PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620
               G+  E +D+++ +  P+  +   W  L+ A   HG  +        + +L P+ P 
Sbjct: 748 ----GKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPK-PD 802

Query: 621 NYVLLSKL 628
           +   +S L
Sbjct: 803 HVTFVSLL 810



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 154/533 (28%), Positives = 260/533 (48%), Gaps = 31/533 (5%)

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +K  +++  +  G ALH   ++   ++  F  N LI MY  FG ++ AR VFD M   + 
Sbjct: 101 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 160

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC---GYLKEIEMGRMI 234
            SW+T++SGY +    +EA+ +F  M   GVEP+   V S++ AC   GY+ +   G  +
Sbjct: 161 ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMAD--EGFQV 218

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H  V    +  ++    ALV  Y   G V  A+ +F+ M + +VV+WTS++ GY+ +G+ 
Sbjct: 219 HGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNP 278

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
              L ++Q M+ EGV  N  T  ++ S+C  L     G  +    I+   E  V V  +L
Sbjct: 279 GEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSL 338

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           I M++  + V+ +  VF   ++   + WNA+++   H+GL R+++  F  M     E N 
Sbjct: 339 ISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 398

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
            TL+SLL   + + +L+    IH  +++ G  S V +   L+ +YS+ G  E A  +F  
Sbjct: 399 TTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQ- 457

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
             + ++D++ W+ ++A Y   G     + +  E++Q G   N VTF SAL ACS+   L 
Sbjct: 458 -AMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLI 516

Query: 535 EG---------LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           E              +F++  +           +V + G+ G + EA  +++TMP +P  
Sbjct: 517 ESKIVHALIIVAGFHDFLIVGN----------ALVTMYGKLGMMMEAKKVLQTMP-QPDR 565

Query: 586 AVWGALLGACVIHG-NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKD 637
             W AL+G    H  N E  E    +    E   P NY+ +  +  A     D
Sbjct: 566 VTWNALIGG---HAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDD 615


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 202/613 (32%), Positives = 324/613 (52%), Gaps = 51/613 (8%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           +N  +  Y + G    +L +F GM R         TY  +I     L+  K   A   +V
Sbjct: 63  WNRKISAYMRKGQCESALSVFNGMRR-----RSTVTYNAMISGY--LSNNKFDCAR--KV 113

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
                D D    N +++ Y+  G + AAR +F+ M E  VVSWN ++SG+ +N + +EA 
Sbjct: 114 FEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEAR 173

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
            +FD ML    E     ++S     G    IE  R + +     ++   I +WN L+  Y
Sbjct: 174 KIFDQMLVKN-EISWNGLLSAYVQNG---RIEDARRLFD----SKMDWEIVSWNCLMGGY 225

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV-------- 309
           V+   +++AR +FDRM  RD ++W  MI GYA NG +  A  LF+ +    V        
Sbjct: 226 VRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVS 285

Query: 310 -------------------RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
                                N ++  ++++       +++ R L      +N       
Sbjct: 286 GFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSW--- 342

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
              ++  YA+C  +  +  +F    ++  + W A+++G   +G + +A+ LF +M  +  
Sbjct: 343 -NTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGG 401

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
             N + L   L + A +A L+    +H  L++ GF +       L+ +Y KCGS+E A  
Sbjct: 402 ILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFD 461

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           +F +I   +KDIV W+ +IAGY  HG G+ A++LF+ M  + ++P++VT    L ACSH 
Sbjct: 462 VFEDIT--EKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHT 518

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           G +D+G++ FN M +N+   + A HYTC++DLLGRAGRLDEA +L+++MP  P  A WGA
Sbjct: 519 GFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGA 578

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LLGA  IHG+ ELGE AA+ +FE+EP+N G YVLLS LY+A  RW++   +R  M +KG+
Sbjct: 579 LLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGV 638

Query: 651 RKAPAHSLIEVRN 663
           +K P +S +E++N
Sbjct: 639 KKVPGYSWVEIQN 651


>gi|15217514|ref|NP_177305.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169720|sp|Q9C9I6.1|PP116_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71490
 gi|12323739|gb|AAG51835.1|AC016163_24 unknown protein; 40702-42747 [Arabidopsis thaliana]
 gi|56381899|gb|AAV85668.1| At1g71490 [Arabidopsis thaliana]
 gi|56790238|gb|AAW30036.1| At1g71490 [Arabidopsis thaliana]
 gi|332197086|gb|AEE35207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 681

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 201/617 (32%), Positives = 320/617 (51%), Gaps = 44/617 (7%)

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDN-----YTYPIVIKACTDLAWRKLGIALHGRVLIT 140
           A +G  HD+ K F  +LRL   +  +     ++   ++ AC D+     G+ +H   + +
Sbjct: 14  ASHGHLHDAFKTF-SLLRLQSSSAVSDDLVLHSAASLLSACVDVRAFLAGVQVHAHCISS 72

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           G +  + +   L+  Y  F     A+ + +       + WN LI+ Y KN   +E +  +
Sbjct: 73  GVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDILHPLPWNVLIASYAKNELFEEVIAAY 132

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
             M+  G+ PD  +  SVL ACG   ++  GR++H  +       ++   NAL+ MY + 
Sbjct: 133 KRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVCNALISMYKRF 192

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT----- 315
            ++  AR +FDRM ERD V+W ++IN YA  G    A  LF  M F GV  + +T     
Sbjct: 193 RNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVSVITWNIIS 252

Query: 316 ---------IGSL---------------------LSACSSLYYLKRGRSLHAWTIKQNLE 345
                    +G+L                     L ACS +  ++ G+ +H   I  + +
Sbjct: 253 GGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGLAIHSSYD 312

Query: 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQM 405
               V   LI MY+KC  ++ +  VF +T +     WN+I++G      + +A  L R+M
Sbjct: 313 GIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSEEASHLLREM 372

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG-FLSVVEVSTGLIDIYSKCGS 464
           LV   +PN  TL S+LP  A +A+LQ     HCY++R   F     +   L+D+Y+K G 
Sbjct: 373 LVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGK 432

Query: 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL 524
           + +A ++ S++ +  +D V ++ +I GYG  G G  A++LFKEM +SG++P+ VT  + L
Sbjct: 433 IVAAKQV-SDL-MSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHVTVVAVL 490

Query: 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            ACSH  L+ EG  LF  M   +       H++C+VDL GRAG L +A D+I  MP KP+
Sbjct: 491 SACSHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHNMPYKPS 550

Query: 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
            A W  LL AC IHGN ++G+ AA+ L E++PENPG YVL++ +Y+A   W     VR +
Sbjct: 551 GATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKLAEVRTI 610

Query: 645 MDEKGLRKAPAHSLIEV 661
           M + G++K P  + I+ 
Sbjct: 611 MRDLGVKKDPGCAWIDT 627



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 138/270 (51%), Gaps = 8/270 (2%)

Query: 33  KQLHAFII-TSGPLFTHLRSSLVRAYGHVSNVR---ILFDEMSERSSFLYNTVMKMYAQN 88
           K++H   I +S     ++R++L+  Y    ++R   I+F +  E S   +N+++  YAQ 
Sbjct: 300 KEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQL 359

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG-FDMDTF 147
             S ++  +   ML  G + P++ T   ++  C  +A  + G   H  +L    F   T 
Sbjct: 360 NKSEEASHLLREMLVAG-FQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTM 418

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           + N L+ +Y   G++ AA++V D M +   V++ +LI GY        AL +F  M +SG
Sbjct: 419 LWNSLVDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSG 478

Query: 208 VEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           ++PD  +VV+VL AC + K +  G R+  ++     +   +  ++ +VD+Y + G + +A
Sbjct: 479 IKPDHVTVVAVLSACSHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKA 538

Query: 267 RLVFDRMSERDV-VTWTSMINGYALNGDVR 295
           + +   M  +    TW +++N   ++G+ +
Sbjct: 539 KDIIHNMPYKPSGATWATLLNACHIHGNTQ 568


>gi|302790816|ref|XP_002977175.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
 gi|300155151|gb|EFJ21784.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
          Length = 806

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 199/625 (31%), Positives = 334/625 (53%), Gaps = 14/625 (2%)

Query: 27  KSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRIL---FDEMSERSSFLYNTVMK 83
           K +A  + +H  + T   + + ++S+LV  Y     + +    FD+  E  +  +N +M 
Sbjct: 165 KDLAQGRSIHYRVATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMS 224

Query: 84  MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD 143
             A  G    ++++F  M    ++   + +  I + AC      + GI +H ++      
Sbjct: 225 ALAGAGHHRRAIELFFQM---EQHQCSDRSCAIALGACAAAGHLRGGIQIHDKIQSEIHG 281

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
               V N LI+MY+  G++  A +VF  M   +VVSW ++I+   ++ +   A+ +FD M
Sbjct: 282 TRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGHYSFAVKLFDGM 341

Query: 204 LKSGVEPD---CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           +  G+ P+    ASVVS +   G    ++ GR IH  +    +  +    N+L++MY + 
Sbjct: 342 IAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARS 401

Query: 261 GSVNEARLVFDRMSE--RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           G + EAR VFD + E  + VV++T+MI  YA NG  R AL +F+ M   GV PN +T  +
Sbjct: 402 GLLAEAREVFDSILENSKTVVSFTTMIAAYAHNGHPRQALEIFREMTARGVAPNEITFAT 461

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLEC-EVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           +L+AC ++  L  G  +H   I+  L+  +     +L+DMYAKC  +  + +VF     K
Sbjct: 462 VLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKTK 521

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V W  I+A  V +G  R A++L+ +ML   + P+ ATL++LL A A L DL     IH
Sbjct: 522 DLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMGEKIH 581

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
              +R            L  +Y+KCGSLE A +++     +  D+  W+ ++A +   G 
Sbjct: 582 RQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRC--RGSDVATWTSMLAAHSQQGL 639

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
              A+ L+ EM   GV+PNEVTF   L +CS  GL+ EG + F+ +  ++ +   A+H+ 
Sbjct: 640 ASVALELYAEMESEGVRPNEVTFIPVLISCSQAGLVAEGREFFHSITSDYGSQPSAEHFG 699

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617
           C+VD+LGRAG+L +A +L+ +MP  P    W +LL +C +H + E+G  AA+ L EL+PE
Sbjct: 700 CMVDVLGRAGKLRDAEELLDSMPFYPDEIAWQSLLSSCKLHTDAEIGTRAAECLLELDPE 759

Query: 618 NPGNYVLLSKLYSAVRRWKDAENVR 642
           +   +V LS++Y+A  R  D + ++
Sbjct: 760 STSQFVALSQIYAAAGRNSDIDEIK 784



 Score =  238 bits (606), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 180/613 (29%), Positives = 290/613 (47%), Gaps = 21/613 (3%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLV-RAYGHV---SNVRILFDEM 70
           L   L++Q    +++   +++HA I++       L   LV + Y           LFD M
Sbjct: 52  LYANLLRQCGNQRALDHGRRVHAHIVSRRLARNALLGELVFQMYARCRCFDTAIALFDAM 111

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
            +R  F +N +MK +       D+L+++  M  +    P    +   I AC  +     G
Sbjct: 112 PDRRPFCWNVLMKEFLAADRPRDTLELYRRM-SVENTQPSACGFMWAIVACGRIKDLAQG 170

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
            ++H RV  TG  +++ + + L+ MY   G +  A   FD   E     WN ++S     
Sbjct: 171 RSIHYRV-ATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGA 229

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
            + + A+ +F  M +        S    L AC     +  G  IH+ +     G  +   
Sbjct: 230 GHHRRAIELFFQMEQHQCSD--RSCAIALGACAAAGHLRGGIQIHDKIQSEIHGTRVLVL 287

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           NAL+ MYV+CG ++EA  VF  M  R+VV+WTSMI   A +G    A+ LF  M  EG+ 
Sbjct: 288 NALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGHYSFAVKLFDGMIAEGIN 347

Query: 311 PNSLTIGSLLSACSSL---YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           PN  T  S++SA + L     L RGR +H+      ++ + IV+ +LI+MYA+  L+  +
Sbjct: 348 PNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAEA 407

Query: 368 FQVFAR--TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            +VF     + K  V +  ++A   HNG  R+A+E+FR+M    V PN+ T  ++L A  
Sbjct: 408 REVFDSILENSKTVVSFTTMIAAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAACV 467

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVS-TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
            + DL     IH  +I  G  S    +   L+D+Y+KCG L  A ++F    +K KD+V 
Sbjct: 468 AIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFE--TMKTKDLVA 525

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+ IIA     G+   A+ L+  M+QSG+ P+  T ++ L AC++ G L  G  +    L
Sbjct: 526 WTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMGEKIHRQAL 585

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
            + +    A     +  +  + G L++A  L R        A W ++L A   H    L 
Sbjct: 586 RS-KLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDV-ATWTSMLAA---HSQQGLA 640

Query: 605 EVAAKWLFELEPE 617
            VA +   E+E E
Sbjct: 641 SVALELYAEMESE 653



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 136/303 (44%), Gaps = 13/303 (4%)

Query: 303 LMQFEGVRPNS----LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
           L++ + +R  S    L   +LL  C +   L  GR +HA  + + L    ++   +  MY
Sbjct: 36  LLRLDKLRHRSTSQLLLYANLLRQCGNQRALDHGRRVHAHIVSRRLARNALLGELVFQMY 95

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
           A+C     +  +F     ++   WN ++   +     R  +EL+R+M VE  +P+     
Sbjct: 96  ARCRCFDTAIALFDAMPDRRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFM 155

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
             + A   + DL Q  +IH Y +  G      + + L+ +Y++CG ++ A   F +   +
Sbjct: 156 WAIVACGRIKDLAQGRSIH-YRVATGRGINSSIQSALVTMYAQCGRIDLAMAAFDD--NR 212

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
           +     W+ I++     GH   A+ LF +M Q   Q ++ +   AL AC+  G L  G+ 
Sbjct: 213 ELGTAPWNAIMSALAGAGHHRRAIELFFQMEQH--QCSDRSCAIALGACAAAGHLRGGIQ 270

Query: 539 LFN-FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
           + +    E H T  R      ++ +  R G+LDEA  +   MP +     W +++ A   
Sbjct: 271 IHDKIQSEIHGT--RVLVLNALISMYVRCGKLDEALRVFADMPHRNV-VSWTSMIAAVAQ 327

Query: 598 HGN 600
            G+
Sbjct: 328 SGH 330


>gi|413932453|gb|AFW67004.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 913

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 201/610 (32%), Positives = 308/610 (50%), Gaps = 10/610 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G + +   LFD M  ++   + T +    +NG    +  MF  ML  G   P+++     
Sbjct: 84  GRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESG-VAPNDFACNAA 142

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + AC       LG  +H   +  GF  D ++G+CLI +Y   G ++AA +VF  M    V
Sbjct: 143 LAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDV 202

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V + +L+S   +N     A+ V   M + G++P+  ++ S+L  C       +G  IH  
Sbjct: 203 VGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPR----GIGEQIHGY 258

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +      +++ A  AL+D Y + G    A+ VF+ +  ++VV+W SM+     +G + +A
Sbjct: 259 MLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDA 318

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L +F  M  EGV+PN       LSAC S+     GR +H   IK++L  ++ V  AL+ M
Sbjct: 319 LRVFSEMISEGVQPNEFAFSIALSACGSVCL---GRQIHCSAIKRDLMTDIRVSNALLSM 375

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y +   V     V  +      V W A ++    NG + KAV L  QM  E   PND   
Sbjct: 376 YGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAF 435

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +S L + A LA L Q   +HC  ++ G    V     LI++YSKCG + SA   F  +  
Sbjct: 436 SSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVM-- 493

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
              D++ W+ +I G   HG    A+  F EM  S  +P++ TF S L  C+H GL+ EG 
Sbjct: 494 DTHDVMSWNSLIHGLAQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGE 553

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             F  M + +       HY C++D+LGR GR  EA  +I  MP +P   +W  LL +C +
Sbjct: 554 TFFRQMTDRYGLTPTPSHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLLASCKL 613

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           H N+++G++AA  L EL   +  +YVL+S LY+    W+DAE VR  MDE G++K    S
Sbjct: 614 HRNLDIGKLAADKLMELSERDSASYVLMSNLYAMHEEWRDAERVRRRMDEIGVKKDAGWS 673

Query: 658 LIEVRNILTA 667
            IEV+N + A
Sbjct: 674 WIEVKNEVEA 683



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 144/512 (28%), Positives = 241/512 (47%), Gaps = 33/512 (6%)

Query: 157 MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVV 216
           M  G +  A  +FD M   +VV+W T ISG  +N   + A  +F  ML+SGV P+  +  
Sbjct: 81  MKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFACN 140

Query: 217 SVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW--NALVDMYVKCGSVNEARLVFDRMS 274
           + L AC     + +G  +H L    R G    AW  + L+++Y +CGS+  A  VF RM 
Sbjct: 141 AALAACAAAGALGLGEQVHSLAV--RAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRME 198

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
             DVV +TS+++    NG++  A+ +   M  +G++PN  T+ S+L+ C        G  
Sbjct: 199 APDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPRGI----GEQ 254

Query: 335 LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
           +H + +K      V   TALID Y++      +  VF     K  V W +++  C+ +G 
Sbjct: 255 IHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGR 314

Query: 395 ARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTG 454
              A+ +F +M+ E V+PN+   +  L A   +   +Q   IHC  I+   ++ + VS  
Sbjct: 315 LDDALRVFSEMISEGVQPNEFAFSIALSACGSVCLGRQ---IHCSAIKRDLMTDIRVSNA 371

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           L+ +Y + G +     +  +  I++ D+V W+  I+    +G  E AV+L  +M   G  
Sbjct: 372 LLSMYGRSGFVSELEAVLGK--IENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFT 429

Query: 515 PNEVTFTSALHACSHGGLLDEGLDLFNFMLE---NHQTCSRADHYTCIVDLLGRAGRLDE 571
           PN+  F+S L +C+   LL +G  L    L+   + + C+       ++++  + GR+  
Sbjct: 430 PNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCT----GNALINMYSKCGRIGS 485

Query: 572 AYDLIRTMPLKPTHAV--WGALLGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLLSK 627
           A      M    TH V  W +L+     HG+  L   A +   E+   +  P +   LS 
Sbjct: 486 ARLAFDVM---DTHDVMSWNSLIHGLAQHGDANL---ALETFSEMCSSDWRPDDSTFLSV 539

Query: 628 LYSAVRRW--KDAEN-VRDVMDEKGLRKAPAH 656
           L         K+ E   R + D  GL   P+H
Sbjct: 540 LVGCNHAGLVKEGETFFRQMTDRYGLTPTPSH 571



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 165/363 (45%), Gaps = 9/363 (2%)

Query: 57  YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
           YG     + +F+ +  ++   + ++M++  ++G   D+L++F  M+  G   P+ + + I
Sbjct: 281 YGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEG-VQPNEFAFSI 339

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
            + AC  +    LG  +H   +      D  V N L++MY   G V     V   +    
Sbjct: 340 ALSACGSVC---LGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIENPD 396

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           +VSW   IS  F+N ++++A+ +   M   G  P+  +  S L +C  L  +  GR +H 
Sbjct: 397 LVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLALLHQGRQLHC 456

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
           L         +   NAL++MY KCG +  ARL FD M   DV++W S+I+G A +GD   
Sbjct: 457 LALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGLAQHGDANL 516

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS-LHAWTIKQNLECEVIVETALI 355
           AL  F  M     RP+  T  S+L  C+    +K G +     T +  L         +I
Sbjct: 517 ALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTPTPSHYACMI 576

Query: 356 DMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGC-VHNGLARKAVELFRQMLVEVVEPN 413
           DM  +      + ++      +   + W  +LA C +H  L     +L    L+E+ E +
Sbjct: 577 DMLGRNGRFAEALRMIENMPFEPDVLIWKTLLASCKLHRNL--DIGKLAADKLMELSERD 634

Query: 414 DAT 416
            A+
Sbjct: 635 SAS 637



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 185/387 (47%), Gaps = 32/387 (8%)

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           +D  +K G + +A  +FDRM  ++VV WT+ I+G   NG    A  +F  M   GV PN 
Sbjct: 77  LDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPND 136

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
               + L+AC++   L  G  +H+  ++     +  + + LI++Y++C  ++ + +VF R
Sbjct: 137 FACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRR 196

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
                 V + ++++    NG   +AV++  QM  + ++PN+ T+ S+      LA+  + 
Sbjct: 197 MEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSM------LAECPRG 250

Query: 434 M--NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           +   IH Y+++      V  ST LID YS+ G   +A  +F    ++ K++V W  ++  
Sbjct: 251 IGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFEN--LESKNVVSWCSMMQL 308

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
               G  + A+ +F EM+  GVQPNE  F+ AL AC   G +  G  +       H +  
Sbjct: 309 CIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSAC---GSVCLGRQI-------HCSAI 358

Query: 552 RADHYT------CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
           + D  T       ++ + GR+G + E   ++  +   P    W A + A   +G     E
Sbjct: 359 KRDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIE-NPDLVSWTAAISANFQNG---FSE 414

Query: 606 VAAKWLFELEPE--NPGNYVLLSKLYS 630
            A   L ++  E   P +Y   S L S
Sbjct: 415 KAVALLLQMHSEGFTPNDYAFSSGLSS 441



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 120/256 (46%), Gaps = 8/256 (3%)

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
           +V+++   +D   K   +  +  +F R  +K  V W   ++GC  NG    A  +F  ML
Sbjct: 69  DVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADML 128

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
              V PND   N+ L A A    L     +H   +R GF +   + + LI++YS+CGSL 
Sbjct: 129 ESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLR 188

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
           +A ++F    ++  D+V ++ +++    +G    AV +  +M + G+QPNE T TS L  
Sbjct: 189 AAEEVFRR--MEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAE 246

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           C  G     G  +  +ML+   + S     T ++D   R G    A  +   +  K    
Sbjct: 247 CPRG----IGEQIHGYMLKVMGSQS-VYASTALIDFYSRYGDFGTAKTVFENLESKNV-V 300

Query: 587 VWGALLGACVIHGNVE 602
            W +++  C+  G ++
Sbjct: 301 SWCSMMQLCIRDGRLD 316


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 169/452 (37%), Positives = 273/452 (60%), Gaps = 2/452 (0%)

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D  ++  +L  C   + + +G+  H L     L  +    N L+++Y KCG  + AR VF
Sbjct: 55  DVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVF 114

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
           D MS R +++W +MI GY  N +   AL LF  M  EG +    T+ S L AC++ Y + 
Sbjct: 115 DAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAII 174

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
             + LH   IK  L+    V TA +D+YAKCN++K +  VF    +K +V W+++ AG V
Sbjct: 175 ECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFV 234

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
            NGL  + + LF+    E ++  + T++S+L   A LA + +   +H  ++++GF   + 
Sbjct: 235 QNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLF 294

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           V+T L+D+Y+KCG +E ++++F+++  ++K++V+W+ +IA +  H H   A+ LF++M Q
Sbjct: 295 VATSLVDVYAKCGQIEKSYEVFADM--EEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQ 352

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
            G+ PNEVT+ S L ACSH GL++EG   FN +L +        HY+C+VD+LGR+G+ D
Sbjct: 353 VGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTD 412

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630
           EA+ L+  MP +PT ++WG+LLG+  IH N+ L  +AA+ LF LEPEN GN+VLLS +Y+
Sbjct: 413 EAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYA 472

Query: 631 AVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           A   W++    R  + + G +K    S IE +
Sbjct: 473 ASGNWENVVVARKYLRDSGAKKEMGRSWIEAK 504



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 197/388 (50%), Gaps = 4/388 (1%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           D +T   +++ C       +G + HG  +  G   DT   N LI +Y   G+   AR+VF
Sbjct: 55  DVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVF 114

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           DAM   S++SWNT+I+GY  N    EAL +F  M + G +    ++ S L AC     I 
Sbjct: 115 DAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAII 174

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
             + +H +     L  +     A +D+Y KC  + +A  VF+ M E+  VTW+S+  G+ 
Sbjct: 175 ECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFV 234

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            NG     L LFQ  Q EG++    T+ S+LS C+SL  +  G  +HA  +K      + 
Sbjct: 235 QNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLF 294

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEV 409
           V T+L+D+YAKC  ++ S++VFA   +K  V WNA++A    +  + +A+ LF +M    
Sbjct: 295 VATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVG 354

Query: 410 VEPNDATLNSLLPAYAILADLQQAMNIHCYLI--RYGFLSVVEVSTGLIDIYSKCGSLES 467
           + PN+ T  S+L A +    +++  +    L+  R    +V+  S  ++D+  + G  + 
Sbjct: 355 IFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSC-MVDVLGRSGKTDE 413

Query: 468 AHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           A K+  ++P  +    +W  ++    +H
Sbjct: 414 AWKLLDKMPF-EPTASMWGSLLGSSRIH 440



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 119/444 (26%), Positives = 205/444 (46%), Gaps = 33/444 (7%)

Query: 2   NGPSHHTLPKTTHLVI------------KLVQQYAATKSIAGTKQLHAFIITSG----PL 45
           + P+H  + K  +LV             +L+Q  A  +S+   K  H   I  G     +
Sbjct: 33  DKPNHRIVHKDKNLVRVERDLIDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTV 92

Query: 46  FTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
             ++  +L    G     R +FD MS RS   +NT++  Y  N    ++LK+F  M R G
Sbjct: 93  TCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREG 152

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
               + +T    + AC           LH   +    D  +FVG   + +Y     +K A
Sbjct: 153 TQMTE-FTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDA 211

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
             VF+ M E + V+W++L +G+ +N   +E L +F    + G++    +V S+L  C  L
Sbjct: 212 CWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASL 271

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
             I  G  +H ++      +N+    +LVD+Y KCG + ++  VF  M E++VV W +MI
Sbjct: 272 ALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMI 331

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI---KQ 342
             ++ +     A+ LF+ MQ  G+ PN +T  S+LSACS    ++ GR  H + +    +
Sbjct: 332 ASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGR--HYFNLLLSDR 389

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP-WNAILAGC-VHNG--LARKA 398
             E  V+  + ++D+  +      ++++  +   + T   W ++L    +H    LAR A
Sbjct: 390 TAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIA 449

Query: 399 VE-LFRQMLVEVVEPNDATLNSLL 421
            E LFR      +EP +   + LL
Sbjct: 450 AEQLFR------LEPENGGNHVLL 467


>gi|302763819|ref|XP_002965331.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
 gi|300167564|gb|EFJ34169.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
          Length = 806

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 198/625 (31%), Positives = 334/625 (53%), Gaps = 14/625 (2%)

Query: 27  KSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRIL---FDEMSERSSFLYNTVMK 83
           K +A  + +H  + T   + + ++S+LV  Y     + +    FD+  E  +  +N +M 
Sbjct: 165 KDLAQGRSIHYRVATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMS 224

Query: 84  MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD 143
             A  G    ++++F  M    ++   + +  I + AC      + GI +H ++      
Sbjct: 225 ALAGAGHHRRAIELFFQM---EQHQCSDRSCAIALGACAAAGHLRGGIQIHDKIQSEIHG 281

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
               V N LI+MY+  G++  A +VF  M   +VVSW ++I+   +  +   ++ +FD M
Sbjct: 282 TRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSFSVKLFDGM 341

Query: 204 LKSGVEPD---CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           +  G+ P+    ASVVS +   G    ++ GR IH  +    +  +    N+L++MY + 
Sbjct: 342 IAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARS 401

Query: 261 GSVNEARLVFDRMSE--RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           G + EAR VFD + E  + VV++T+MI+ YA NG  R AL +F+ M   GV PN +T  +
Sbjct: 402 GLLAEAREVFDSILENSKTVVSFTTMISAYAHNGHPRQALEIFREMTARGVAPNEITFAT 461

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLEC-EVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           +L+AC ++  L  G  +H   I+  L+  +     +L+DMYAKC  +  + +VF     K
Sbjct: 462 VLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKTK 521

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
             V W  I+A  V +G  R A++L+ +ML   + P+ ATL++LL A A L DL     IH
Sbjct: 522 DLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMGEKIH 581

Query: 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
              +R            L  +Y+KCGSLE A +++     +  D+  W+ ++A +   G 
Sbjct: 582 RQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRC--RGSDVATWTSMLAAHSQQGL 639

Query: 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557
              A+ L+ EM   GV+PNEVTF   L +CS  GL+ EG + F+ +  ++ +   A+H+ 
Sbjct: 640 ASVALELYAEMESEGVRPNEVTFIPVLISCSQAGLVAEGREFFHSITSDYGSQPSAEHFG 699

Query: 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617
           C+VD+LGRAG+L +A +L+ +MP  P    W +LL +C +H + E+G  AA+ L EL+PE
Sbjct: 700 CMVDVLGRAGKLRDAEELLDSMPFYPDEIAWQSLLSSCKLHTDAEIGTRAAECLLELDPE 759

Query: 618 NPGNYVLLSKLYSAVRRWKDAENVR 642
           +   +V LS++Y+A  R  D + ++
Sbjct: 760 STSQFVALSQIYAAAGRNSDIDEIK 784



 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 178/613 (29%), Positives = 289/613 (47%), Gaps = 21/613 (3%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLV-RAYGHV---SNVRILFDEM 70
           L   L++Q    +++   +++HA I++       L   LV + Y           LFD M
Sbjct: 52  LYANLLRQCGNQRALDHGRRVHAHIVSRRLARNALLGELVFQMYARCRCFDTAIALFDAM 111

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
            +R  F +N +MK +       D+L+++  M  +    P    +   I AC  +     G
Sbjct: 112 PDRRPFCWNVLMKEFLAADRPRDTLELYRRM-SVENTQPSACGFMWAIVACGRIKDLAQG 170

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
            ++H RV  TG  +++ + + L+ MY   G +  A   FD   E     WN ++S     
Sbjct: 171 RSIHYRV-ATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGA 229

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
            + + A+ +F  M +        S    L AC     +  G  IH+ +     G  +   
Sbjct: 230 GHHRRAIELFFQMEQHQCSD--RSCAIALGACAAAGHLRGGIQIHDKIQSEIHGTRVLVL 287

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           NAL+ MYV+CG ++EA  VF  M  R+VV+WTSMI   A  G    ++ LF  M  EG+ 
Sbjct: 288 NALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSFSVKLFDGMIAEGIN 347

Query: 311 PNSLTIGSLLSACSSL---YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           PN  T  S++SA + L     L RGR +H+      ++ + IV+ +LI+MYA+  L+  +
Sbjct: 348 PNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAEA 407

Query: 368 FQVFAR--TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            +VF     + K  V +  +++   HNG  R+A+E+FR+M    V PN+ T  ++L A  
Sbjct: 408 REVFDSILENSKTVVSFTTMISAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAACV 467

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVS-TGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV 484
            + DL     IH  +I  G  S    +   L+D+Y+KCG L  A ++F    +K KD+V 
Sbjct: 468 AIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFE--TMKTKDLVA 525

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+ IIA     G+   A+ L+  M+QSG+ P+  T ++ L AC++ G L  G  +    L
Sbjct: 526 WTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMGEKIHRQAL 585

Query: 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604
            + +    A     +  +  + G L++A  L R        A W ++L A   H    L 
Sbjct: 586 RS-KLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDV-ATWTSMLAA---HSQQGLA 640

Query: 605 EVAAKWLFELEPE 617
            VA +   E+E E
Sbjct: 641 SVALELYAEMESE 653



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 136/303 (44%), Gaps = 13/303 (4%)

Query: 303 LMQFEGVRPNS----LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
           L++ + +R  S    L   +LL  C +   L  GR +HA  + + L    ++   +  MY
Sbjct: 36  LLRLDKLRHRSTSQLLLYANLLRQCGNQRALDHGRRVHAHIVSRRLARNALLGELVFQMY 95

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
           A+C     +  +F     ++   WN ++   +     R  +EL+R+M VE  +P+     
Sbjct: 96  ARCRCFDTAIALFDAMPDRRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFM 155

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
             + A   + DL Q  +IH Y +  G      + + L+ +Y++CG ++ A   F +   +
Sbjct: 156 WAIVACGRIKDLAQGRSIH-YRVATGRGINSSIQSALVTMYAQCGRIDLAMAAFDD--NR 212

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
           +     W+ I++     GH   A+ LF +M Q   Q ++ +   AL AC+  G L  G+ 
Sbjct: 213 ELGTAPWNAIMSALAGAGHHRRAIELFFQMEQH--QCSDRSCAIALGACAAAGHLRGGIQ 270

Query: 539 LFN-FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
           + +    E H T  R      ++ +  R G+LDEA  +   MP +     W +++ A   
Sbjct: 271 IHDKIQSEIHGT--RVLVLNALISMYVRCGKLDEALRVFADMPHRNV-VSWTSMIAAVAQ 327

Query: 598 HGN 600
            G+
Sbjct: 328 TGH 330


>gi|78499697|gb|ABB45851.1| hypothetical protein [Eutrema halophilum]
          Length = 697

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 206/614 (33%), Positives = 305/614 (49%), Gaps = 8/614 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGML--RLGEYNPDNYTYP 115
           G +   R +FD+M  R    +  +MK Y       ++L +F  M    LG  + D Y   
Sbjct: 42  GKLRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLG-VSGDTYVLS 100

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH 175
           + +KAC   +    G +LH     T      FVG+ L+ MYM  G++  + +VF  M   
Sbjct: 101 VALKACGQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMPFR 160

Query: 176 SVVSWNTLISGYFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMI 234
           + V+W   I+G        E L  F  M +   +  D  +    L AC  L++++ GR I
Sbjct: 161 NSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQVKYGREI 220

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H  V        +   N+L  MY +CG + +   +F+ MSERDVV WTS+I  Y   G  
Sbjct: 221 HTHVIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLITAYIRIGQE 280

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETAL 354
             A+  F LM+   V PN  T  S  +AC+SL  L  G  LH       L   + V  ++
Sbjct: 281 EKAVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLGDSLSVSNSM 340

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           + MY+ C  +  +  +F     +  + W+ I+ G        +  + F  M     +P D
Sbjct: 341 MKMYSTCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQAGPQPTD 400

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
             L SLL    I+A L+Q   +H   +  G      + + LI++YSKCGS+  A K+F E
Sbjct: 401 FALASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSALINMYSKCGSIIEASKVFEE 460

Query: 475 IPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
              KD+ DIV  + +I GY  HG  E A+ LF++ ++   +P++VTF S L ACSH G L
Sbjct: 461 ---KDRTDIVSLTAMINGYAEHGKCEEAIDLFEKSLKLSFRPDDVTFISVLTACSHSGQL 517

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
           D G   FN M EN+      +HY C+VDLL RAGRL++A  +I  MP K    VW  LL 
Sbjct: 518 DLGFQYFNLMQENYNMRPAKEHYGCMVDLLCRAGRLNDAEKMINEMPWKKDDVVWTTLLR 577

Query: 594 ACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKA 653
           AC   G+VE G  AA+ + EL+P +    V L+ ++S+   WK+A NVR  M  KG+ K 
Sbjct: 578 ACKEKGDVERGRRAAQRILELDPTSFTTLVTLANIHSSTGNWKEAANVRKDMKSKGVIKE 637

Query: 654 PAHSLIEVRNILTA 667
           P  S I +++ ++A
Sbjct: 638 PGWSSILIKDQVSA 651



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 136/502 (27%), Positives = 238/502 (47%), Gaps = 10/502 (1%)

Query: 26  TKSIAGTKQLHAFIITSGPLFT-HLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTV 81
           + +IA  + LHA+   +  L +  + S+L+  Y   G +     +F EM  R+S  +   
Sbjct: 109 SSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMPFRNSVTWTAF 168

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           +      G  ++ L+ F  M R  + + D + + I +KAC DL   K G  +H  V++ G
Sbjct: 169 ITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQVKYGREIHTHVIVKG 228

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
           F    +V N L  MY   GE++   ++F++M E  VV W +LI+ Y +    ++A+  F 
Sbjct: 229 FAAILWVANSLATMYTECGEMQDGLRLFESMSERDVVLWTSLITAYIRIGQEEKAVNTFL 288

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
            M  S V P+  +  S   AC  L  +  G  +H  V    LG +++  N+++ MY  C 
Sbjct: 289 LMRNSQVSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLGDSLSVSNSMMKMYSTCA 348

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
            ++ A ++F  M  RD+++W+++I GY+           F  M+  G +P    + SLLS
Sbjct: 349 KLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQAGPQPTDFALASLLS 408

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
               +  L++GR +HA  +   LE    + +ALI+MY+KC  +  + +VF    +   V 
Sbjct: 409 VSGIMAVLEQGRQVHALALYLGLEQNPTIRSALINMYSKCGSIIEASKVFEEKDRTDIVS 468

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
             A++ G   +G   +A++LF + L     P+D T  S+L A +    L         + 
Sbjct: 469 LTAMINGYAEHGKCEEAIDLFEKSLKLSFRPDDVTFISVLTACSHSGQLDLGFQYFNLMQ 528

Query: 442 R-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
             Y      E    ++D+  + G L  A K+ +E+P K KD VVW+ ++      G  E 
Sbjct: 529 ENYNMRPAKEHYGCMVDLLCRAGRLNDAEKMINEMPWK-KDDVVWTTLLRACKEKGDVER 587

Query: 501 AVSLFKEMVQSGVQPNEVTFTS 522
                +   Q  ++ +  +FT+
Sbjct: 588 G----RRAAQRILELDPTSFTT 605



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/426 (27%), Positives = 195/426 (45%), Gaps = 39/426 (9%)

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE--GVRPNSLT 315
           +  G +  AR VFD+M  RD+ +WT+++ GY        AL LF  M+ +  GV  ++  
Sbjct: 39  IDSGKLRVARQVFDKMPRRDIKSWTAIMKGYVAATKPEEALILFSAMRVDPLGVSGDTYV 98

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
           +   L AC     +  G SLHA+  K  L   V V +AL+DMY +   +  S +VFA   
Sbjct: 99  LSVALKACGQSSNIAYGESLHAYAEKTFLLSSVFVGSALLDMYMRIGKIDKSCRVFAEMP 158

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQM-LVEVVEPNDATLNSLLPAYAILADLQQAM 434
            + +V W A + G VH GL  + +  F QM   + +  +       L A A L  ++   
Sbjct: 159 FRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQLSSDTFAFAIALKACADLRQVKYGR 218

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            IH ++I  GF +++ V+  L  +Y++CG ++   ++F  +   ++D+V+W+ +I  Y  
Sbjct: 219 EIHTHVIVKGFAAILWVANSLATMYTECGEMQDGLRLFESMS--ERDVVLWTSLITAYIR 276

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS-----------HGGL----LDEGLDL 539
            G  E AV+ F  M  S V PNE TF S   AC+           HG +    L + L +
Sbjct: 277 IGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLGDSLSV 336

Query: 540 FNFMLENHQTCSRAD---------------HYTCIVDLLGRAGRLDEAYDL---IRTMPL 581
            N M++ + TC++ D                ++ I+    +A   +E +     +R    
Sbjct: 337 SNSMMKMYSTCAKLDSASVLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQAGP 396

Query: 582 KPTHAVWGALLGACVIHGNVELG-EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAEN 640
           +PT     +LL    I   +E G +V A  L+    +NP     L  +YS      +A  
Sbjct: 397 QPTDFALASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSALINMYSKCGSIIEASK 456

Query: 641 VRDVMD 646
           V +  D
Sbjct: 457 VFEEKD 462


>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
          Length = 674

 Score =  339 bits (869), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 185/547 (33%), Positives = 301/547 (55%), Gaps = 6/547 (1%)

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +K    L +   G  LH  V+  G      + N ++ +Y+   E     K+FD M   +V
Sbjct: 80  LKISAKLGFLHGGKQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNV 139

Query: 178 VSWNTLISGYF----KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
           VSWNTLI G      K A  +     F  M+   + P+C ++  +L A   L ++ + R 
Sbjct: 140 VSWNTLICGVVEGNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQ 199

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           +H  +       N    +ALVD Y K G V+EA+  FD +S RD+V W  M++ YALNG 
Sbjct: 200 LHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGV 259

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              A G+F+LM+ EGV+ +  T  S++++C  L     G+ +H   I+ + + +V+V +A
Sbjct: 260 QGKAFGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASA 319

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
           L+DMY+K   ++ + + F     K  V W  +  G   +G  ++ + L ++M+     P+
Sbjct: 320 LVDMYSKNENIEDARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTYPD 379

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
           +  L S+L +   L+   + + +H Y++  GF + + ++  L+  YSKCGS+ SA + FS
Sbjct: 380 ELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFS 439

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
            +   + DI+ W+ ++  Y  HG  +  V +F++++ S V+P++V F   L AC+HGG +
Sbjct: 440 SVA--EPDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLSACAHGGFV 497

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
            EGL  FN M+  +Q    ++HYT I+DLLGRAG LDEA +L+ +MP++P     GA LG
Sbjct: 498 LEGLHYFNLMINVYQIMPDSEHYTSIIDLLGRAGFLDEAVNLLTSMPVEPRSDTLGAFLG 557

Query: 594 ACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKA 653
           AC ++ NV L   A++ LF +EP  PG Y L+S +Y++V  W D   VR +M E+   K 
Sbjct: 558 ACKVYRNVGLARWASEKLFVMEPNEPGKYSLMSNMYASVGHWFDVARVRKLMRERCDFKV 617

Query: 654 PAHSLIE 660
           P  S +E
Sbjct: 618 PGCSWME 624



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 227/458 (49%), Gaps = 8/458 (1%)

Query: 31  GTKQLHAFIITSGPL-FTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYA 86
           G KQLHA +I  G      L++ ++  Y      ++V  +FDEM  ++   +NT++    
Sbjct: 91  GGKQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVV 150

Query: 87  QNGASHDSLKMFLGMLR---LGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFD 143
           +       +++     R   L    P+  T   +++A  +L    +   LH  +L +GFD
Sbjct: 151 EGNCKFALVRLGFHCFRQMVLEMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFD 210

Query: 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203
            + FVG+ L+  Y  FG V  A+  FD +    +V WN ++S Y  N    +A  VF  M
Sbjct: 211 SNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLM 270

Query: 204 LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
              GV+ D  +  S++ +CG L    +G+ +H L+       ++   +ALVDMY K  ++
Sbjct: 271 RLEGVKGDXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENI 330

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
            +AR  FD M  +++V+WT+M  GY  +GD +  + L Q M      P+ L + S+LS+C
Sbjct: 331 EDARKAFDGMJVKNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTYPDELALASILSSC 390

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
            +L        +HA+ ++   E  + +  AL+  Y+KC  +  +FQ F+  ++   + W 
Sbjct: 391 GNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISWT 450

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR- 442
           +++     +GL+++ V++F ++L   V P+      +L A A    + + ++    +I  
Sbjct: 451 SLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMINV 510

Query: 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
           Y  +   E  T +ID+  + G L+ A  + + +P++ +
Sbjct: 511 YQIMPDSEHYTSIIDLLGRAGFLDEAVNLLTSMPVEPR 548


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 178/461 (38%), Positives = 266/461 (57%), Gaps = 4/461 (0%)

Query: 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
           G+E +     SVL  C     I  G+ +H  +        +     L+ +Y KC  + +A
Sbjct: 5   GLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDA 64

Query: 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326
           R V D M ER+VV+WT+MI+GY+  G    AL LF  M   G  PN  T  ++L++C+S 
Sbjct: 65  RRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSS 124

Query: 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAIL 386
              + GR +H+  IK + E  + V ++L+DMYAK   +  + +VF    ++  V   AI+
Sbjct: 125 SGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAII 184

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           +G    GL  +A++LFR++  E +  N  T  S+L A + LA L     +H +++R    
Sbjct: 185 SGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLP 244

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
             V +   LID+YSKCGSL  + +IF  +P  ++ ++ W+ ++ GY  HG G  AV LFK
Sbjct: 245 FYVVLQNSLIDMYSKCGSLTYSRRIFDSMP--ERTVISWNAMLVGYSKHGLGREAVELFK 302

Query: 507 EMVQSG-VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS-RADHYTCIVDLLG 564
            M +   V+P+ VTF + L  CSHGG+ D GL++F  M+          +HY C+VDL G
Sbjct: 303 LMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFG 362

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
           RAGR++EA++ I+ MP +PT A+WG+LLGAC +H NV +GE  A+ L E+E EN GNYV+
Sbjct: 363 RAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVI 422

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           LS LY++  RW D   VR++M EK + K P  S IE+   L
Sbjct: 423 LSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTL 463



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 209/385 (54%), Gaps = 4/385 (1%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           Y  V+  C      + G  +H  ++ T ++   ++   LI +Y     +  AR+V D M 
Sbjct: 13  YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 72

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
           E +VVSW  +ISGY +  YA EAL +F  ML SG  P+  +  +VL +C      ++GR 
Sbjct: 73  ERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQ 132

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           IH LV       +I   ++L+DMY K G + EAR VFD + ERDVV+ T++I+GYA  G 
Sbjct: 133 IHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGL 192

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              AL LF+ +Q EG+R N +T  S+L+A S L  L  GR +H+  ++  L   V+++ +
Sbjct: 193 DEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNS 252

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE-VVEP 412
           LIDMY+KC  +  S ++F    ++  + WNA+L G   +GL R+AVELF+ M  E  V+P
Sbjct: 253 LIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKP 312

Query: 413 NDATLNSLLPAYAILADLQQAMNIHCYLI--RYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           +  T  ++L   +      + + I   ++  + GF   +E    ++D++ + G +E A +
Sbjct: 313 DSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFE 372

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMH 495
              ++P  +    +W  ++    +H
Sbjct: 373 FIKKMPF-EPTAAIWGSLLGACRVH 396



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 123/394 (31%), Positives = 215/394 (54%), Gaps = 20/394 (5%)

Query: 25  ATKSIAGTKQLHAFIITS---GPLFTHLRSSLVRAYGH---VSNVRILFDEMSERSSFLY 78
           +  +I   +++HA +I +    P++  LR+ L+  Y     + + R + DEM ER+   +
Sbjct: 22  SQTAIREGQRVHAHMIKTCYEPPVY--LRTRLIVLYNKCRCLGDARRVLDEMPERNVVSW 79

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
             ++  Y+Q G + ++L +F+ ML  G   P+ +T+  V+ +CT  +  +LG  +H  V+
Sbjct: 80  TAMISGYSQRGYASEALHLFVEMLMSGT-APNEFTFATVLTSCTSSSGFQLGRQIHSLVI 138

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
            T F+   FVG+ L+ MY   G++  AR+VFD + E  VVS   +ISGY +    +EAL 
Sbjct: 139 KTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALD 198

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           +F  + + G+  +  +  SVL A   L  ++ GR +H  V   +L   +   N+L+DMY 
Sbjct: 199 LFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYS 258

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG-VRPNSLTIG 317
           KCGS+  +R +FD M ER V++W +M+ GY+ +G  R A+ LF+LM+ E  V+P+S+T  
Sbjct: 259 KCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFL 318

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQN--LECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
           ++LS CS      RG  +    + Q    E E+     ++D++ +   V+ +F+   +  
Sbjct: 319 AVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMP 378

Query: 376 KKKTVP-WNAILAGC-----VHNG--LARKAVEL 401
            + T   W ++L  C     VH G  +AR+ +E+
Sbjct: 379 FEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEI 412



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 157/319 (49%), Gaps = 15/319 (4%)

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
           M  +G+        S+L+ C S   ++ G+ +HA  IK   E  V + T LI +Y KC  
Sbjct: 1   MGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRC 60

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           +  + +V     ++  V W A+++G    G A +A+ LF +ML+    PN+ T  ++L +
Sbjct: 61  LGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTS 120

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
               +  Q    IH  +I+  F S + V + L+D+Y+K G +  A ++F  +P  ++D+V
Sbjct: 121 CTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP--ERDVV 178

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
             + II+GY   G  E A+ LF+ + + G++ N VT+ S L A S    LD G  + + +
Sbjct: 179 SCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHV 238

Query: 544 LENHQTCSRADHY----TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           L      ++   Y      ++D+  + G L  +  +  +MP + T   W A+L     HG
Sbjct: 239 LR-----AKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPER-TVISWNAMLVGYSKHG 292

Query: 600 NVELGEVAAKWLFELEPEN 618
              LG  A +    ++ EN
Sbjct: 293 ---LGREAVELFKLMKEEN 308


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 180/463 (38%), Positives = 275/463 (59%), Gaps = 3/463 (0%)

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262
           M  SG  P+  +  S+L A      +  G+ +H L+       NI    ALVDMY KC  
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 263 VNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ-LMQFEGVRPNSLTIGSLLS 321
           ++ A  VFD+M ER++V+W SMI G+  N     A+G+F+ +++ + V PN +++ S+LS
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 322 ACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381
           AC+++  L  GR +H   +K  L     V  +L+DMY KC       ++F     +  V 
Sbjct: 121 ACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVT 180

Query: 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           WN ++ G V N    +A   F  M  E + P++A+ +++L + A LA L Q   IH  +I
Sbjct: 181 WNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQII 240

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           + G++  + +   LI +Y+KCGSL  A+++F    I+D +++ W+ +I+ Y +HG     
Sbjct: 241 KLGYVKNMCILGSLITMYAKCGSLVDAYQVFE--GIEDHNVISWTAMISAYQLHGCANQV 298

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561
           + LF+ M+  G++P+ VTF   L ACSH G ++EGL  FN M + H      +HY C+VD
Sbjct: 299 IELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVD 358

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGN 621
           LLGRAG LDEA   I +MP+KPT +VWGALLGAC  +GN+++G  AA+ LFE+EP NPGN
Sbjct: 359 LLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGN 418

Query: 622 YVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664
           YVLL+ + +   R ++A  VR +M   G+RK P  S I+V+N+
Sbjct: 419 YVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNM 461



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/441 (28%), Positives = 213/441 (48%), Gaps = 12/441 (2%)

Query: 109 PDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168
           P+ +T+  ++ A         G  LH  +   GFD + FVG  L+ MY    ++ +A +V
Sbjct: 8   PNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRV 67

Query: 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVF-DWMLKSGVEPDCASVVSVLPACGYLKE 227
           FD M E ++VSWN++I G+F N     A+ VF D + +  V P+  SV SVL AC  +  
Sbjct: 68  FDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGG 127

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           +  GR +H +V    L       N+L+DMY KC   +E   +F  + +RDVVTW  ++ G
Sbjct: 128 LNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMG 187

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           +  N     A   F +M+ EG+ P+  +  ++L + +SL  L +G ++H   IK      
Sbjct: 188 FVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKN 247

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           + +  +LI MYAKC  +  ++QVF        + W A+++    +G A + +ELF  ML 
Sbjct: 248 MCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLS 307

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV-VEVSTGLIDIYSKCGSLE 466
           E +EP+  T   +L A +    +++ +     + +   ++   E    ++D+  + G L+
Sbjct: 308 EGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLD 367

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAG---YGMHGHGETAVSLFKEMVQSGVQP-NEVTFTS 522
            A +    +P+K     VW  ++     YG    G  A     EM     +P N   +  
Sbjct: 368 EAKRFIESMPMKPTP-SVWGALLGACRKYGNLKMGREAAERLFEM-----EPYNPGNYVL 421

Query: 523 ALHACSHGGLLDEGLDLFNFM 543
             + C+  G L+E  ++   M
Sbjct: 422 LANMCTRSGRLEEANEVRRLM 442



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 198/406 (48%), Gaps = 17/406 (4%)

Query: 24  AATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAYGHVSN----VRILFDEMSERSSFLY 78
           AAT  +   +QLH+ I   G      + ++LV  Y   ++    VR+ FD+M ER+   +
Sbjct: 21  AATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRV-FDQMPERNLVSW 79

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
           N+++  +  N     ++ +F  +LR     P+  +   V+ AC ++     G  +HG V+
Sbjct: 80  NSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVV 139

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
             G    T+V N L+ MY          K+F  + +  VV+WN L+ G+ +N   +EA  
Sbjct: 140 KFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACN 199

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
            F  M + G+ PD AS  +VL +   L  +  G  IH+ +      KN+    +L+ MY 
Sbjct: 200 YFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYA 259

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           KCGS+ +A  VF+ + + +V++WT+MI+ Y L+G     + LF+ M  EG+ P+ +T   
Sbjct: 260 KCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVC 319

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE--TALIDMYAKCNLVKLSFQVFARTSK 376
           +LSACS    ++ G + H  ++K+  +     E    ++D+  +   +  + + F  +  
Sbjct: 320 VLSACSHTGRVEEGLA-HFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEA-KRFIESMP 377

Query: 377 KKTVP--WNAILAGCVHNG---LARKAVELFRQMLVEVVEPNDATL 417
            K  P  W A+L  C   G   + R+A E   +M  E   P +  L
Sbjct: 378 MKPTPSVWGALLGACRKYGNLKMGREAAERLFEM--EPYNPGNYVL 421


>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
          Length = 1073

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 205/623 (32%), Positives = 332/623 (53%), Gaps = 11/623 (1%)

Query: 34  QLHAFIITSG----PLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           +LHA+I  +G     L  +   S+    G ++N R +FD +   +   +N ++  Y + G
Sbjct: 323 KLHAYIKQAGLEQEVLVGNALISMYSRCGSLANARQVFDNLRSLNRTTWNAMIAGYGE-G 381

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              ++ ++F  M + G + PD +TY  ++  C D A    G  LH ++  TG+  D  V 
Sbjct: 382 LMEEAFRLFRAMEQKG-FQPDKFTYASLLAICADRADLDRGKELHSQIASTGWQTDLTVA 440

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
             LI+MY   G  + ARKVF+ M E +V+SWN  IS   ++   KEA   F  M +  V 
Sbjct: 441 TALISMYAKCGSPEEARKVFNQMPERNVISWNAFISCCCRHDLGKEAFQAFKQMRRDDVN 500

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           PD  + +++L +C   +++E GR IH ++   G L  N  A NAL+ MY +CG++ +AR 
Sbjct: 501 PDHITFITLLNSCTSPEDLERGRYIHGKINQWGMLSNNHVA-NALISMYGRCGNLADARE 559

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VF R+  RD+ +W +MI     +G   +A  LF+  + EG + +  T  ++L A ++L  
Sbjct: 560 VFYRIRRRDLGSWNAMIAANVQHGANGSAFDLFRKYRSEGGKGDKYTFINVLRAVANLED 619

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
           L  GR +H    K     ++ V T LI MY+KC  ++ +  VF+   +K  V WNA+LA 
Sbjct: 620 LDAGRMIHGLVEKGGFGKDIRVLTTLIKMYSKCGSLRDAENVFSTVQEKDVVCWNAMLAA 679

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
             H+   + A++LF+QM +E V P+ +T ++ L A A L  ++    IH  L   G  + 
Sbjct: 680 YAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEHGKKIHAQLKEAGMETD 739

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
             VS  LI++YS+CG L SA ++F ++    +DI  W+ +IAGY  +G G  A+  ++ M
Sbjct: 740 TRVSNSLIEMYSRCGCLCSAKQVFEKML--SRDINSWNALIAGYCQNGQGNIALEYYELM 797

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
           +++ + PN+ TFTS L + +  G  ++  D    + +         HY  +V  LGRAG 
Sbjct: 798 LRASIVPNKATFTSILSSYAQLGEEEQAFDFLESIKKEWNMEPSEQHYAYMVAALGRAGL 857

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE-NPGNYVLLSK 627
           L EA + I  +  +    +W +LL AC IH NVEL E A + L + + + +P     L  
Sbjct: 858 LKEAEEFIEEISAESAALMWESLLVACRIHLNVELAETAVEHLLDAKAQASPAVCEQLMS 917

Query: 628 LYSAVRRWKDAENVRDVMDEKGL 650
           +Y+A  RW+D   ++  M E GL
Sbjct: 918 IYAAAGRWEDVSVLKTTMQEAGL 940



 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 182/622 (29%), Positives = 320/622 (51%), Gaps = 15/622 (2%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSER 73
           + +QQ    KS+A  K++H  + ++      +L + L+  Y   G + +   +F  M ++
Sbjct: 105 RRLQQCVLAKSLAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIEDANNVFQAMEDK 164

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
               +N ++  YA +G   ++  +F  M R G   P+  T+  ++ AC      + G  +
Sbjct: 165 DVVSWNAMISGYALHGRDQEAADLFYQMQREG-LKPNQNTFISILSACQSPIALEFGEQI 223

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H R+   G++ D  V   LI MY   G ++ ARKVF+ M E +VVSW  +ISGY ++  +
Sbjct: 224 HSRIAKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDS 283

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
           +EAL +F  +++SG++P+  S  S+L AC    ++  G  +H  +    L + +   NAL
Sbjct: 284 REALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNAL 343

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           + MY +CGS+  AR VFD +   +  TW +MI GY   G +  A  LF+ M+ +G +P+ 
Sbjct: 344 ISMYSRCGSLANARQVFDNLRSLNRTTWNAMIAGYG-EGLMEEAFRLFRAMEQKGFQPDK 402

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            T  SLL+ C+    L RG+ LH+       + ++ V TALI MYAKC   + + +VF +
Sbjct: 403 FTYASLLAICADRADLDRGKELHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQ 462

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
             ++  + WNA ++ C  + L ++A + F+QM  + V P+  T  +LL +     DL++ 
Sbjct: 463 MPERNVISWNAFISCCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERG 522

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             IH  + ++G LS   V+  LI +Y +CG+L  A ++F    I+ +D+  W+ +IA   
Sbjct: 523 RYIHGKINQWGMLSNNHVANALISMYGRCGNLADAREVF--YRIRRRDLGSWNAMIAANV 580

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
            HG   +A  LF++    G + ++ TF + L A ++   LD G  + + ++E        
Sbjct: 581 QHGANGSAFDLFRKYRSEGGKGDKYTFINVLRAVANLEDLDAG-RMIHGLVEKGGFGKDI 639

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWL-- 611
              T ++ +  + G L +A ++  T+  K     W A+L A   + + + G+ A K    
Sbjct: 640 RVLTTLIKMYSKCGSLRDAENVFSTVQEKDV-VCWNAMLAA---YAHSDRGQDALKLFQQ 695

Query: 612 FELEPENPGNYVLLSKLYSAVR 633
            +LE  NP +    + L +  R
Sbjct: 696 MQLEGVNPDSSTYSTALNACAR 717



 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 142/430 (33%), Positives = 231/430 (53%), Gaps = 14/430 (3%)

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
           K GV+ +       L  C   K +  G+ +H+ +   +   +I   N L+ MY KCGS+ 
Sbjct: 93  KRGVQANLNFYARRLQQCVLAKSLAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIE 152

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
           +A  VF  M ++DVV+W +MI+GYAL+G  + A  LF  MQ EG++PN  T  S+LSAC 
Sbjct: 153 DANNVFQAMEDKDVVSWNAMISGYALHGRDQEAADLFYQMQREGLKPNQNTFISILSACQ 212

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
           S   L+ G  +H+   K   E +V V TALI+MY KC  ++L+ +VF    ++  V W A
Sbjct: 213 SPIALEFGEQIHSRIAKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTA 272

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           +++G V +G +R+A+ LFR+++   ++PN  +  S+L A     DL + + +H Y+ + G
Sbjct: 273 MISGYVQHGDSREALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAG 332

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
               V V   LI +YS+CGSL +A ++F    ++  +   W+ +IAGYG  G  E A  L
Sbjct: 333 LEQEVLVGNALISMYSRCGSLANARQVFDN--LRSLNRTTWNAMIAGYG-EGLMEEAFRL 389

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDL 562
           F+ M Q G QP++ T+ S L  C+    LD G +L + +     T  + D    T ++ +
Sbjct: 390 FRAMEQKGFQPDKFTYASLLAICADRADLDRGKELHSQIA---STGWQTDLTVATALISM 446

Query: 563 LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE--NPG 620
             + G  +EA  +   MP +   + W A +  C  H   +LG+ A +   ++  +  NP 
Sbjct: 447 YAKCGSPEEARKVFNQMPERNVIS-WNAFISCCCRH---DLGKEAFQAFKQMRRDDVNPD 502

Query: 621 NYVLLSKLYS 630
           +   ++ L S
Sbjct: 503 HITFITLLNS 512



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 167/339 (49%), Gaps = 34/339 (10%)

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
           G  QL+   GV+ N       L  C     L  G+ +H        + ++ +   LI MY
Sbjct: 86  GAVQLLGKRGVQANLNFYARRLQQCVLAKSLAEGKKVHDHMRSAQFKPDIYLNNMLISMY 145

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
           +KC  ++ +  VF     K  V WNA+++G   +G  ++A +LF QM  E ++PN  T  
Sbjct: 146 SKCGSIEDANNVFQAMEDKDVVSWNAMISGYALHGRDQEAADLFYQMQREGLKPNQNTFI 205

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           S+L A      L+    IH  + + G+ S V VST LI++Y KCGSLE A K+F+E  ++
Sbjct: 206 SILSACQSPIALEFGEQIHSRIAKAGYESDVNVSTALINMYCKCGSLELARKVFNE--MR 263

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
           ++++V W+ +I+GY  HG    A++LF+++++SG+QPN+V+F S L AC++   L EGL 
Sbjct: 264 ERNVVSWTAMISGYVQHGDSREALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLK 323

Query: 539 LF---------------NFMLENHQTCSRADHYTCIVDLLGRAGR--------------L 569
           L                N ++  +  C    +   + D L    R              +
Sbjct: 324 LHAYIKQAGLEQEVLVGNALISMYSRCGSLANARQVFDNLRSLNRTTWNAMIAGYGEGLM 383

Query: 570 DEAYDLIRTMPLK---PTHAVWGALLGACVIHGNVELGE 605
           +EA+ L R M  K   P    + +LL  C    +++ G+
Sbjct: 384 EEAFRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGK 422


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 185/574 (32%), Positives = 310/574 (54%), Gaps = 39/574 (6%)

Query: 125 AWRKLG-IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTL 183
           A+ K G +A   RV     D + F  N L++   +   V    ++F +M E   VS+N L
Sbjct: 57  AYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNAL 116

Query: 184 ISGYFKNAYAKEALVVFDWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
           I+G+        ++ ++  +L+   V P   ++ +++     L +  +G  +H  V   R
Sbjct: 117 ITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVL--R 174

Query: 243 LGKNIAAW--NALVDMYVKCGSVNEARLVFDRMS-------------------------- 274
           LG    A+  + LVDMY K G + +AR VF  M                           
Sbjct: 175 LGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGL 234

Query: 275 -----ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL 329
                +RD +TWT+M+ G   NG    AL +F+ M+ EGV  +  T GS+L+AC +L   
Sbjct: 235 FQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAAS 294

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGC 389
           + G+ +HA+  +   E  V V +AL+DMY+KC  ++L+  VF R + +  + W A++ G 
Sbjct: 295 EEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGY 354

Query: 390 VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
             N  + +AV  F +M ++ ++P+D TL S++ + A LA L++    HC  +  G +  +
Sbjct: 355 GQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYI 414

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            VS  L+ +Y KCGS+E AH++F E+   D+  V W+ ++ GY   G  +  + LF++M+
Sbjct: 415 TVSNALVTLYGKCGSIEDAHRLFDEMSFHDQ--VSWTALVTGYAQFGKAKETIDLFEKML 472

Query: 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569
            +G++P+ VTF   L ACS  GL+++G D F+ M ++H      DHYTC++DL  R+GR 
Sbjct: 473 VNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRF 532

Query: 570 DEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629
            EA + I+ MP  P    W  LL +C + GN+E+G+ AA+ L E +P+NP +YVLL  ++
Sbjct: 533 KEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMH 592

Query: 630 SAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           +A  +W +  ++R  M ++ ++K P  S I+ +N
Sbjct: 593 AAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKN 626



 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 156/551 (28%), Positives = 270/551 (49%), Gaps = 42/551 (7%)

Query: 13  THLVIKLVQQYAATKSIAGTKQLHAFIITSGP-LFTHLRSSLVRAYGH---VSNVRILFD 68
           T L+  L+  YA +  +A  +++  F     P LFT  R++L+ A  H   V ++  LF 
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRV--FDEMPDPNLFT--RNALLSALAHSRLVPDMERLFA 103

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
            M ER +  YN ++  ++  G+   S++++  +LR     P   T   +I   + L+ R 
Sbjct: 104 SMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRA 163

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
           LG ++H +VL  GF    FVG+ L+ MY   G ++ AR+VF  M   +VV +NTLI+G  
Sbjct: 164 LGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLL 223

Query: 189 K-------------------------------NAYAKEALVVFDWMLKSGVEPDCASVVS 217
           +                               N    EAL VF  M   GV  D  +  S
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283

Query: 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERD 277
           +L ACG L   E G+ IH  +       N+   +ALVDMY KC S+  A  VF RM+ R+
Sbjct: 284 ILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRN 343

Query: 278 VVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337
           +++WT+MI GY  N     A+  F  MQ +G++P+  T+GS++S+C++L  L+ G   H 
Sbjct: 344 IISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHC 403

Query: 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARK 397
             +   L   + V  AL+ +Y KC  ++ + ++F   S    V W A++ G    G A++
Sbjct: 404 LALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKE 463

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLI 456
            ++LF +MLV  ++P+  T   +L A +    +++  +    + + +  + + +  T +I
Sbjct: 464 TIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMI 523

Query: 457 DIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ-P 515
           D+YS+ G  + A +   ++P    D   W+ +++   + G+ E      + ++++  Q P
Sbjct: 524 DLYSRSGRFKEAEEFIKQMP-HSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNP 582

Query: 516 NEVTFTSALHA 526
                  ++HA
Sbjct: 583 ASYVLLCSMHA 593


>gi|414869047|tpg|DAA47604.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 694

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 213/639 (33%), Positives = 337/639 (52%), Gaps = 18/639 (2%)

Query: 36  HAFIITSGPLFTHLRSSLVRAYGH--VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHD 93
           HA ++ SG       + L+ AY    ++  R +FDE+    +  +N+++  +   GA  D
Sbjct: 15  HATLLKSGASSPTPWNQLLTAYSATGLAAARRVFDEIPHPDAASWNSLLAAHVAAGAHRD 74

Query: 94  SLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLI 153
           + ++   M   G      +     +++       +LG  L    +  G   + F  + L+
Sbjct: 75  AWRLLRAMHARG-LAASTFALGSALRSAAAARRPELGAQLQSFSVRCGLADNVFPASALL 133

Query: 154 AMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCA 213
            +Y   G +  AR+VFD M   ++VSWN +I+GY  +    EA+ +F  M + G  PD  
Sbjct: 134 DVYAKCGRLGDARRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVGSVPDGT 193

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVA--GGRLGKNIAAWNALVDMYVKCGSVNEARLVFD 271
           +   +L      +   + R +H  +   G  LG  + A NA +  Y +C ++ ++R +FD
Sbjct: 194 TFAVLLATIAGPRWYSLMRQLHGKIVKYGSALG--LVALNAAITAYSQCDALADSRKIFD 251

Query: 272 RMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSL-YYL 329
            +  RD+++W SM+  YA +G    A+  F ++M+  G++P+  +  S +S CS      
Sbjct: 252 GIESRDLISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCSEHGCDD 311

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAK----CNLVKLSFQVFARTSKKKTVPWNAI 385
           ++GRS+H+  IK  LE    V  A+I MY +    C +++ ++  F+    K  V WN++
Sbjct: 312 QQGRSIHSLVIKFGLEGVTPVCNAMIAMYTRFADNC-MMEDAYNCFSSLVFKDAVSWNSM 370

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445
           L G  H+GL+  A++ FR M  E +  ++  L++ L + + LA L+    +H  +++ GF
Sbjct: 371 LTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSCSDLAVLRLGRQVHSLVVQSGF 430

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVV-WSVIIAGYGMHGHGETAVSL 504
            S   VS+ LI +YSKCG L  A K F E    DK   V W+ ++ GY  HG  +T   L
Sbjct: 431 ASNDFVSSSLIFMYSKCGVLGDARKSFEE---ADKSSSVPWNSMMFGYAQHGQAQTVTDL 487

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           F EM+   V  + VTF + + A SHGGL+DEG ++ N M   ++   R +HY C VDL G
Sbjct: 488 FNEMLDLEVPLDHVTFVALITAYSHGGLVDEGSEILNTMETRYKIPMRMEHYACGVDLYG 547

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624
           RAG+LD+A +LI +MP +P   VW  LLGAC IHGN+EL    A+ LF  EP     YVL
Sbjct: 548 RAGQLDKAKELIESMPFQPDAIVWMTLLGACRIHGNMELASDVARHLFVAEPRQHSTYVL 607

Query: 625 LSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           LS +YS +  W D   V+ VM  + L K P  S IEV+N
Sbjct: 608 LSSMYSGLGMWSDRATVQKVMRNRALSKIPGWSWIEVKN 646


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 194/557 (34%), Positives = 301/557 (54%), Gaps = 13/557 (2%)

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS- 176
           +++C   A    G  LH  +L   F         LI MY     +  + +VF+    H+ 
Sbjct: 36  LQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFPTHHNK 95

Query: 177 -VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
            V ++N LI+G+  NA  + AL +++ M   G+ PD  +   V+ ACG   +  +   IH
Sbjct: 96  NVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTKIH 155

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
            L+    L  ++   +ALV+ Y+K   V EA  VF+ +  RDVV W +M+NG+A  G   
Sbjct: 156 GLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFE 215

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            ALG+F+ M   GV P   T+  +LS  S +     GR++H +  K   E  V+V  ALI
Sbjct: 216 EALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNALI 275

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML-VEVVEPND 414
           DMY KC  V  +  VF    +     WN+I++     G     + LF +M+    V+P+ 
Sbjct: 276 DMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDL 335

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGF--------LSVVEVSTGLIDIYSKCGSLE 466
            T+ ++LPA   LA L     IH Y++  G            V ++  L+D+Y+KCG++ 
Sbjct: 336 VTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMR 395

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
            A  +F  + +++KD+  W+++I GYGMHG+G  A+ +F  M Q+ + PNE++F   L A
Sbjct: 396 DARMVF--VNMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLLSA 453

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           CSH G++ EGL   + M   +      +HYTC++D+L RAG+L EAYDL+ TMP K    
Sbjct: 454 CSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFKADPV 513

Query: 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646
            W +LL AC +H + +L EVAA  + ELEP++ GNYVL+S +Y  V R+++    R  M 
Sbjct: 514 GWRSLLAACRLHNDTDLAEVAASKVIELEPDHCGNYVLMSNVYGVVGRYEEVLEWRYTMK 573

Query: 647 EKGLRKAPAHSLIEVRN 663
           ++ ++K P  S IE+ N
Sbjct: 574 QQNVKKRPGCSWIELVN 590



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 142/501 (28%), Positives = 248/501 (49%), Gaps = 18/501 (3%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLR-SSLVRAYGHVS----NVRIL-FDEM 70
           I  +Q  A   +++  K+LH  ++ +    + L  +SL+  Y   S    ++R+  F   
Sbjct: 33  IATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFPTH 92

Query: 71  SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLG 130
             ++ F YN ++  +  N     +L ++  M  LG   PD +T+P VI+AC D     + 
Sbjct: 93  HNKNVFAYNALIAGFLANALPQRALALYNQMRHLG-IAPDKFTFPCVIRACGDDDDGFVV 151

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
             +HG +   G ++D FVG+ L+  Y+ F  V  A +VF+ +    VV WN +++G+ + 
Sbjct: 152 TKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQI 211

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
              +EAL VF  M  +GV P   +V  VL     + + + GR +H  V        +   
Sbjct: 212 GRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVS 271

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLF-QLMQFEGV 309
           NAL+DMY KC  V +A  VF+ M E D+ +W S+++ +   GD    L LF ++M    V
Sbjct: 272 NALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGSSRV 331

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE--------VIVETALIDMYAKC 361
           +P+ +T+ ++L AC+ L  L  GR +H + +   L  E        V++  AL+DMYAKC
Sbjct: 332 QPDLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAKC 391

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
             ++ +  VF    +K    WN ++ G   +G   +A+++F +M    + PN+ +   LL
Sbjct: 392 GNMRDARMVFVNMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLL 451

Query: 422 PAYAILADLQQAMNIHCYL-IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK 480
            A +    +++ +     +  +YG    +E  T +ID+  + G L  A+ +   +P K  
Sbjct: 452 SACSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFK-A 510

Query: 481 DIVVWSVIIAGYGMHGHGETA 501
           D V W  ++A   +H   + A
Sbjct: 511 DPVGWRSLLAACRLHNDTDLA 531



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 123/390 (31%), Positives = 186/390 (47%), Gaps = 23/390 (5%)

Query: 34  QLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNG 89
           ++H  +   G  L   + S+LV  Y     V     +F+E+  R   L+N ++  +AQ G
Sbjct: 153 KIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIG 212

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              ++L +F  M   G   P  YT   V+   + +     G A+HG V   G++    V 
Sbjct: 213 RFEEALGVFRRMGGNGVV-PCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVS 271

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG-V 208
           N LI MY     V  A  VF+ M E  + SWN+++S + +       L +FD M+ S  V
Sbjct: 272 NALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGSSRV 331

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK--------NIAAWNALVDMYVKC 260
           +PD  +V +VLPAC +L  +  GR IH  +    L K        ++   NAL+DMY KC
Sbjct: 332 QPDLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAKC 391

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           G++ +AR+VF  M E+DV +W  MI GY ++G    AL +F  M    + PN ++   LL
Sbjct: 392 GNMRDARMVFVNMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLL 451

Query: 321 SACSSLYYLKRGRS-LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ-VFARTSKKK 378
           SACS    +K G   L     K  +   +   T +IDM  +   +  ++  V     K  
Sbjct: 452 SACSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPFKAD 511

Query: 379 TVPWNAILAGC-VHNGL------ARKAVEL 401
            V W ++LA C +HN        A K +EL
Sbjct: 512 PVGWRSLLAACRLHNDTDLAEVAASKVIEL 541



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 187/399 (46%), Gaps = 13/399 (3%)

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D  + ++ L +C +   +  G+ +H  +       +  A  +L++MY KC  ++ +  VF
Sbjct: 28  DLGTCIATLQSCAHNANLSKGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVF 87

Query: 271 DRMSE--RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           +  +   ++V  + ++I G+  N   + AL L+  M+  G+ P+  T   ++ AC     
Sbjct: 88  NFPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDD 147

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
                 +H    K  LE +V V +AL++ Y K   V  +++VF     +  V WNA++ G
Sbjct: 148 GFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNG 207

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
               G   +A+ +FR+M    V P   T+  +L  ++++ D      +H ++ + G+ S 
Sbjct: 208 FAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESG 267

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           V VS  LID+Y KC  +  A  +F    + + DI  W+ I++ +   G     + LF  M
Sbjct: 268 VVVSNALIDMYGKCKCVGDALSVFEM--MDEIDIFSWNSIMSVHERCGDHYGTLRLFDRM 325

Query: 509 VQSG-VQPNEVTFTSALHACSHGGLLDEGLDLFNFML-------ENHQTCSRADHYTCIV 560
           + S  VQP+ VT T+ L AC+H   L  G ++  +M+       E+H           ++
Sbjct: 326 MGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALM 385

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
           D+  + G + +A  +   M  K   A W  ++    +HG
Sbjct: 386 DMYAKCGNMRDARMVFVNMREKDV-ASWNIMITGYGMHG 423


>gi|356532922|ref|XP_003535018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Glycine max]
          Length = 611

 Score =  338 bits (868), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 193/555 (34%), Positives = 316/555 (56%), Gaps = 15/555 (2%)

Query: 113 TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG-EVKAARKVFDA 171
            Y  +++AC       LG  LH  VL +GF  D FV N L+++Y         AR +FDA
Sbjct: 55  VYASLLQACRKAHSFPLGTHLHAHVLKSGFLADRFVANSLLSLYSKLSPHFSQARALFDA 114

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
           +    V++W ++ISG+ + A  K A+ +F  ML   +EP+  ++ S+L AC  L+ + +G
Sbjct: 115 LPFKDVIAWTSIISGHVQKAQPKTAVHLFLQMLGQAIEPNAFTLSSILKACSQLENLHLG 174

Query: 232 RMIHELV--AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
           + +H +V   G     N+ A  AL+DMY +   V++AR VFD + E D V WT++I+  A
Sbjct: 175 KTLHAVVFIRGFHSNNNVVAC-ALIDMYGRSRVVDDARKVFDELPEPDYVCWTAVISTLA 233

Query: 290 LNGDVRNALGLFQLMQFEGV--RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
            N   R A+ +F  M   G+    +  T G+LL+AC +L +L+ GR +H   +   ++  
Sbjct: 234 RNDRFREAVRVFFAMHDGGLGLEVDGFTFGTLLNACGNLGWLRMGREVHGKVVTLGMKGN 293

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ--M 405
           V VE++L+DMY KC  V  +  VF    +K  V   A+L    HNG     + L R+   
Sbjct: 294 VFVESSLLDMYGKCGEVGCARVVFDGLEEKNEVALTAMLGVYCHNGECGSVLGLVREWRS 353

Query: 406 LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
           +V+V      +  +++ A + LA ++Q   +HC  +R G    V V + L+D+Y+KCGS+
Sbjct: 354 MVDVY-----SFGTIIRACSGLAAVRQGNEVHCQYVRRGGWRDVVVESALVDLYAKCGSV 408

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
           + A+++FS +  + ++++ W+ +I G+  +G G+  V LF+EMV+ GV+P+ ++F + L 
Sbjct: 409 DFAYRLFSRM--EARNLITWNAMIGGFAQNGRGQEGVELFEEMVKEGVRPDWISFVNVLF 466

Query: 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           ACSH GL+D+G   F+ M   +       HYTC++D+LGRA  ++EA  L+ +   +  H
Sbjct: 467 ACSHNGLVDQGRRYFDLMRREYGIRPGVVHYTCMIDILGRAELIEEAESLLESADCRYDH 526

Query: 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645
           + W  LLGAC    +    E  AK + +LEP+   +YVLL  +Y AV +W +A  +R +M
Sbjct: 527 SRWAVLLGACTKCSDYVTAERIAKKMIQLEPDFHLSYVLLGNIYRAVGKWNEALEIRKLM 586

Query: 646 DEKGLRKAPAHSLIE 660
           +E+G++K P  S IE
Sbjct: 587 EERGVKKVPGKSWIE 601



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 151/507 (29%), Positives = 251/507 (49%), Gaps = 16/507 (3%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYG-----HVSNVRILFDEMSER 73
           L+Q      S      LHA ++ SG L     ++ + +       H S  R LFD +  +
Sbjct: 59  LLQACRKAHSFPLGTHLHAHVLKSGFLADRFVANSLLSLYSKLSPHFSQARALFDALPFK 118

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
               + +++  + Q      ++ +FL ML      P+ +T   ++KAC+ L    LG  L
Sbjct: 119 DVIAWTSIISGHVQKAQPKTAVHLFLQMLGQA-IEPNAFTLSSILKACSQLENLHLGKTL 177

Query: 134 HGRVLITGFDMDTFVGNC-LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
           H  V I GF  +  V  C LI MY     V  ARKVFD + E   V W  +IS   +N  
Sbjct: 178 HAVVFIRGFHSNNNVVACALIDMYGRSRVVDDARKVFDELPEPDYVCWTAVISTLARNDR 237

Query: 193 AKEALVVFDWMLKS--GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
            +EA+ VF  M     G+E D  +  ++L ACG L  + MGR +H  V    +  N+   
Sbjct: 238 FREAVRVFFAMHDGGLGLEVDGFTFGTLLNACGNLGWLRMGREVHGKVVTLGMKGNVFVE 297

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           ++L+DMY KCG V  AR+VFD + E++ V  T+M+  Y  NG+  + LGL +  +     
Sbjct: 298 SSLLDMYGKCGEVGCARVVFDGLEEKNEVALTAMLGVYCHNGECGSVLGLVREWR---SM 354

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
            +  + G+++ ACS L  +++G  +H   +++    +V+VE+AL+D+YAKC  V  ++++
Sbjct: 355 VDVYSFGTIIRACSGLAAVRQGNEVHCQYVRRGGWRDVVVESALVDLYAKCGSVDFAYRL 414

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F+R   +  + WNA++ G   NG  ++ VELF +M+ E V P+  +  ++L A +    +
Sbjct: 415 FSRMEARNLITWNAMIGGFAQNGRGQEGVELFEEMVKEGVRPDWISFVNVLFACSHNGLV 474

Query: 431 QQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
            Q       + R YG    V   T +IDI  +   +E A  +      +  D   W+V++
Sbjct: 475 DQGRRYFDLMRREYGIRPGVVHYTCMIDILGRAELIEEAESLLESADCR-YDHSRWAVLL 533

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPN 516
                     TA  + K+M+Q  ++P+
Sbjct: 534 GACTKCSDYVTAERIAKKMIQ--LEPD 558


>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
          Length = 542

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 183/490 (37%), Positives = 283/490 (57%), Gaps = 7/490 (1%)

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGV-EPDCASVVSVLPACGYLKEIEMGRMIH 235
            +SWN+ ISG   N   +    VF  + +SG+ + D A++ +VL AC   +   + +MIH
Sbjct: 6   TISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYVSKMIH 65

Query: 236 ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
            LV      + I   NAL+  Y +CG  +  R VFD MSE++VVTWT++I+G +      
Sbjct: 66  SLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQFYE 125

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            +L LF  M+   V PNSLT  S L ACS L  ++ GR +H    K  +  ++ +E+AL+
Sbjct: 126 ESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCIESALM 185

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE--VVEPN 413
           DMY+KC  ++ ++++F    +   V    IL G   NG   +++++F +M+    V++PN
Sbjct: 186 DMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGVVIDPN 245

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
              ++++L  + I   L     IH  +I+  F S   V+ GLI++YSKCG L+ + KIF 
Sbjct: 246 --MISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIKIFC 303

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
            +P   ++ V W+ +IA +  HG+G  A+ L++EM   GV P +VTF S LHAC+H GL+
Sbjct: 304 WMP--QRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGLV 361

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
           ++G+     M +++    R +HY C+VD++GRAG L+EA   I  +P KP   VW ALLG
Sbjct: 362 EKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQALLG 421

Query: 594 ACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKA 653
           AC IHGN E+G+ AA  LF   PE+P  Y+LL+ +YS+  +WK+       M + G+ K 
Sbjct: 422 ACSIHGNSEMGKYAANQLFLQAPESPAPYILLANIYSSEGKWKERARTIKKMKDMGVTKE 481

Query: 654 PAHSLIEVRN 663
              S IE+  
Sbjct: 482 TGISWIEIEK 491



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 215/431 (49%), Gaps = 2/431 (0%)

Query: 70  MSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129
           M  + +  +N+ +     NG      ++F  +   G Y  D  T   V+ AC    +  +
Sbjct: 1   MPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYV 60

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
              +H  V + G++ +  VGN LI  Y   G   + R+VFD M E +VV+W  +ISG  +
Sbjct: 61  SKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQ 120

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
             + +E+L +F  M    V+P+  + +S L AC  L+ I  GR IH LV    +  ++  
Sbjct: 121 GQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLCI 180

Query: 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
            +AL+DMY KCGS+ +A  +F+   E D V+ T ++ G A NG    ++ +F  M   GV
Sbjct: 181 ESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNGV 240

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
             +   I ++L        L  G+ +H+  IK++      V   LI+MY+KC  +  S +
Sbjct: 241 VIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSIK 300

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           +F    ++ +V WN+++A    +G   +A++L+ +M +E V P D T  SLL A A +  
Sbjct: 301 IFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVGL 360

Query: 430 LQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
           +++ M     + + YG    +E    ++D+  + G L  A K    +P K   I+VW  +
Sbjct: 361 VEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEK-PGILVWQAL 419

Query: 489 IAGYGMHGHGE 499
           +    +HG+ E
Sbjct: 420 LGACSIHGNSE 430



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 197/386 (51%), Gaps = 7/386 (1%)

Query: 32  TKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           +K +H+ +   G      + ++L+ +Y   G  S+ R +FDEMSE++   +  V+   +Q
Sbjct: 61  SKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQ 120

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
                +SLK+F G +R G  +P++ TY   + AC+ L   + G  +HG V   G   D  
Sbjct: 121 GQFYEESLKLF-GKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQIHGLVWKLGVHFDLC 179

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           + + L+ MY   G ++ A K+F++  E   VS   ++ G  +N + +E++ VF  M+K+G
Sbjct: 180 IESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVKNG 239

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           V  D   + ++L   G    + +G+ IH L+     G N    N L++MY KCG ++++ 
Sbjct: 240 VVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDDSI 299

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +F  M +R+ V+W SMI  +A +G+   AL L++ M+ EGV P  +T  SLL AC+ + 
Sbjct: 300 KIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAHVG 359

Query: 328 YLKRGRS-LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV-PWNAI 385
            +++G   L +      +   +     ++DM  +  L+  + +   R  +K  +  W A+
Sbjct: 360 LVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQAL 419

Query: 386 LAGCVHNGLARKAVELFRQMLVEVVE 411
           L  C  +G +        Q+ ++  E
Sbjct: 420 LGACSIHGNSEMGKYAANQLFLQAPE 445


>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01030, mitochondrial; Flags: Precursor
 gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 195/635 (30%), Positives = 327/635 (51%), Gaps = 77/635 (12%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LFDEM +R    +N ++ +  ++G    ++++F  M   G    D+ T   +++ C++  
Sbjct: 45  LFDEMPKRDDLAWNEIVMVNLRSGNWEKAVELFREMQFSGAKAYDS-TMVKLLQVCSNKE 103

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS--------- 176
               G  +HG VL  G + +  + N LI MY   G+++ +RKVF++M + +         
Sbjct: 104 GFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILS 163

Query: 177 --------------------------VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
                                     +V+WN+L+SGY     +K+A+ V   M  +G++P
Sbjct: 164 SYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKP 223

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
             +S+ S+L A      +++G+ IH  +   +L  ++     L+DMY+K G +  AR+VF
Sbjct: 224 STSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVF 283

Query: 271 DRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
           D M  +++V W S+++G +    +++A  L   M+ EG++P+++T  SL S         
Sbjct: 284 DMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASG-------- 335

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP----WNAIL 386
                                      YA     + +  V  +  +K   P    W AI 
Sbjct: 336 ---------------------------YATLGKPEKALDVIGKMKEKGVAPNVVSWTAIF 368

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446
           +GC  NG  R A+++F +M  E V PN AT+++LL     L+ L     +H + +R   +
Sbjct: 369 SGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKNLI 428

Query: 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
               V+T L+D+Y K G L+SA +IF    IK+K +  W+ ++ GY M G GE  ++ F 
Sbjct: 429 CDAYVATALVDMYGKSGDLQSAIEIF--WGIKNKSLASWNCMLMGYAMFGRGEEGIAAFS 486

Query: 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566
            M+++G++P+ +TFTS L  C + GL+ EG   F+ M   +      +H +C+VDLLGR+
Sbjct: 487 VMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLLGRS 546

Query: 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626
           G LDEA+D I+TM LKP   +WGA L +C IH ++EL E+A K L  LEP N  NY+++ 
Sbjct: 547 GYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMI 606

Query: 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            LYS + RW+D E +R++M    +R     S I++
Sbjct: 607 NLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQI 641



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/537 (25%), Positives = 238/537 (44%), Gaps = 81/537 (15%)

Query: 16  VIKLVQQYAATKSIAGTKQLHAFIITSG-------------------------PLFTHLR 50
           ++KL+Q  +  +  A  +Q+H +++  G                          +F  ++
Sbjct: 92  MVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGKLELSRKVFNSMK 151

Query: 51  -------SSLVRAY---GHVSNVRILFDEMS----ERSSFLYNTVMKMYAQNGASHDSLK 96
                  +S++ +Y   G+V +   L DEM     +     +N+++  YA  G S D++ 
Sbjct: 152 DRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIA 211

Query: 97  MFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMY 156
           + L  +++    P   +   +++A  +    KLG A+HG +L      D +V   LI MY
Sbjct: 212 V-LKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMY 270

Query: 157 MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVV 216
           +  G +  AR VFD M   ++V+WN+L+SG       K+A  +   M K G++PD  +  
Sbjct: 271 IKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAIT-- 328

Query: 217 SVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSER 276
                                            WN+L   Y   G   +A  V  +M E+
Sbjct: 329 ---------------------------------WNSLASGYATLGKPEKALDVIGKMKEK 355

Query: 277 ----DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
               +VV+WT++ +G + NG+ RNAL +F  MQ EGV PN+ T+ +LL     L  L  G
Sbjct: 356 GVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSG 415

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
           + +H + +++NL C+  V TAL+DMY K   ++ + ++F     K    WN +L G    
Sbjct: 416 KEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMF 475

Query: 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL-IRYGFLSVVEV 451
           G   + +  F  ML   +EP+  T  S+L        +Q+       +  RYG +  +E 
Sbjct: 476 GRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEH 535

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
            + ++D+  + G L+ A      + +K  D  +W   ++   +H   E A   +K +
Sbjct: 536 CSCMVDLLGRSGYLDEAWDFIQTMSLK-PDATIWGAFLSSCKIHRDLELAEIAWKRL 591



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 121/493 (24%), Positives = 200/493 (40%), Gaps = 106/493 (21%)

Query: 230 MGRMIHE-LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
           +G  IH  L+  G    +    +A +  Y +C S+  A  +FD M +RD + W  ++   
Sbjct: 5   LGLTIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVN 64

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
             +G+   A+ LF+ MQF G +    T+  LL  CS+      GR +H + ++  LE  V
Sbjct: 65  LRSGNWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNV 124

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTS--------------------------------- 375
            +  +LI MY++   ++LS +VF                                     
Sbjct: 125 SMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEIC 184

Query: 376 --KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
             K   V WN++L+G    GL++ A+ + ++M +  ++P+ ++++SLL A A    L+  
Sbjct: 185 GLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLG 244

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD-------------- 479
             IH Y++R      V V T LID+Y K G L  A  +F  +  K+              
Sbjct: 245 KAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYA 304

Query: 480 -------------------KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
                               D + W+ + +GY   G  E A+ +  +M + GV PN V++
Sbjct: 305 CLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSW 364

Query: 521 TSALHACSHGGLLDEGLDLFNFMLEN----------------------------HQTCSR 552
           T+    CS  G     L +F  M E                             H  C R
Sbjct: 365 TAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLR 424

Query: 553 ----ADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
                D Y  T +VD+ G++G L  A ++   +  K + A W  +L    + G  E G  
Sbjct: 425 KNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNK-SLASWNCMLMGYAMFGRGEEGIA 483

Query: 607 AAKWLFE--LEPE 617
           A   + E  +EP+
Sbjct: 484 AFSVMLEAGMEPD 496


>gi|357443809|ref|XP_003592182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481230|gb|AES62433.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 912

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 191/587 (32%), Positives = 319/587 (54%), Gaps = 5/587 (0%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           + T++    +NG   ++ ++++ M+  G Y P+ +T+  ++ A +       G  LH  +
Sbjct: 186 WTTMLSSLVENGKWGEAFEIYVKMIESGVY-PNEFTFVKLLGAVSSFLGLSYGKLLHAHL 244

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           ++ G +++  +   ++ MY     +  A KV +   E+ V  W TLISG+ +N   +EA+
Sbjct: 245 IMFGAELNLVLKTAVVDMYSKCRRMVDAIKVSNLTPEYDVYLWTTLISGFTQNLQVREAI 304

Query: 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
            VF  M  SG+ P+  +  S+L A   +  +++G   H  V    L  ++   NALVDMY
Sbjct: 305 SVFRDMELSGLLPNNFTYSSLLNASSSILSLDLGEQFHSRVIIVGLEDDLYIGNALVDMY 364

Query: 258 VKCGSVN-EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI 316
           +KC  +   A  VF  ++  +V+ WTS+I G+A    + ++  LF  MQ  GVRPNS T+
Sbjct: 365 MKCSHITTNAVKVFREITSPNVMCWTSLIAGFA-EKRLEDSFQLFAEMQAAGVRPNSFTM 423

Query: 317 GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK 376
            ++L ACS    L     LH   IK  ++ ++ V  AL+D YA   ++  ++ V    + 
Sbjct: 424 SAILGACSKTRSLVPTMMLHGHIIKTKVDIDIAVANALVDTYAGVGMIDEAWSVIGTMNL 483

Query: 377 KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436
           + ++ +  + A     G    A+++   M  + ++ ++ +L S L A A L  ++    +
Sbjct: 484 RDSITYTCLAARLNQKGHHGMALKVLIHMCNDGIKMDEFSLASFLSAAAGLGTMETGKQL 543

Query: 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           HCY ++ GF     VS  L+ +YSKCGS+  A++ F +I   + D   W+ +I+G+  +G
Sbjct: 544 HCYSVKSGFQRCHSVSNSLVHLYSKCGSIHDANRAFKDI--SEPDAFSWNGLISGFSWNG 601

Query: 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556
               A+S F +M  +GV+P+ +T  S + ACSHGGLL+ GL+ F+ M + +    + DHY
Sbjct: 602 LISHALSTFDDMRLAGVKPDSITLLSLISACSHGGLLELGLEYFHSMQKEYHITPKLDHY 661

Query: 557 TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616
            C+VDLLGR GRL+EA  +I  M  KP   +   LL AC +HGNV LGE  A+   EL+P
Sbjct: 662 MCLVDLLGRGGRLEEAMGVIEKMSFKPDSLICKTLLNACNLHGNVALGEDMARRCLELDP 721

Query: 617 ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
            +P  Y+LL+ LY         E  R +M E+GLR++P    +E+R+
Sbjct: 722 SDPAIYLLLANLYDNAGLSDFGEKTRRLMRERGLRRSPGQCWMEIRS 768



 Score =  215 bits (548), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 148/464 (31%), Positives = 230/464 (49%), Gaps = 15/464 (3%)

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           K GI +H  ++  G   D ++ N L+++Y     V  AR +FD M    VVSW T++S +
Sbjct: 31  KEGICIHSPIIKLGLQHDLYLTNNLLSLYAKTFGVHRARHLFDEMPNRDVVSWTTILSSH 90

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            K  +  +AL +FD M+ SG  P+  ++ S L +C  L E E G  IH       L  N 
Sbjct: 91  TKTKHHSDALQLFDMMIGSGEYPNEFTLSSALRSCFALGEFERGMQIHCSAVKLGLEMNR 150

Query: 248 AAWNALVDMYVKCG--SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
               +LV+ Y KCG  SV   +L+       DVV+WT+M++    NG    A  ++  M 
Sbjct: 151 FVGTSLVEFYTKCGCCSVEAWKLLSLVKDGGDVVSWTTMLSSLVENGKWGEAFEIYVKMI 210

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365
             GV PN  T   LL A SS   L  G+ LHA  I    E  ++++TA++DMY+KC  + 
Sbjct: 211 ESGVYPNEFTFVKLLGAVSSFLGLSYGKLLHAHLIMFGAELNLVLKTAVVDMYSKCRRMV 270

Query: 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA 425
            + +V   T +     W  +++G   N   R+A+ +FR M +  + PN+ T +SLL A +
Sbjct: 271 DAIKVSNLTPEYDVYLWTTLISGFTQNLQVREAISVFRDMELSGLLPNNFTYSSLLNASS 330

Query: 426 ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES-AHKIFSEIPIKDKDIVV 484
            +  L      H  +I  G    + +   L+D+Y KC  + + A K+F EI     +++ 
Sbjct: 331 SILSLDLGEQFHSRVIIVGLEDDLYIGNALVDMYMKCSHITTNAVKVFREIT--SPNVMC 388

Query: 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFML 544
           W+ +IAG+      E +  LF EM  +GV+PN  T ++ L ACS    L     +   ML
Sbjct: 389 WTSLIAGFA-EKRLEDSFQLFAEMQAAGVRPNSFTMSAILGACSKTRSL-----VPTMML 442

Query: 545 ENHQTCSRAD----HYTCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
             H   ++ D        +VD     G +DEA+ +I TM L+ +
Sbjct: 443 HGHIIKTKVDIDIAVANALVDTYAGVGMIDEAWSVIGTMNLRDS 486



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 151/556 (27%), Positives = 273/556 (49%), Gaps = 16/556 (2%)

Query: 45  LFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL 104
           L  +L S   + +G V   R LFDEM  R    + T++  + +     D+L++F  M+  
Sbjct: 51  LTNNLLSLYAKTFG-VHRARHLFDEMPNRDVVSWTTILSSHTKTKHHSDALQLFDMMIGS 109

Query: 105 GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG--EV 162
           GEY P+ +T    +++C  L   + G+ +H   +  G +M+ FVG  L+  Y   G   V
Sbjct: 110 GEY-PNEFTLSSALRSCFALGEFERGMQIHCSAVKLGLEMNRFVGTSLVEFYTKCGCCSV 168

Query: 163 KAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPAC 222
           +A + +        VVSW T++S   +N    EA  ++  M++SGV P+  + V +L A 
Sbjct: 169 EAWKLLSLVKDGGDVVSWTTMLSSLVENGKWGEAFEIYVKMIESGVYPNEFTFVKLLGAV 228

Query: 223 GYLKEIEMGRMIHE--LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT 280
                +  G+++H   ++ G  L  N+    A+VDMY KC  + +A  V +   E DV  
Sbjct: 229 SSFLGLSYGKLLHAHLIMFGAEL--NLVLKTAVVDMYSKCRRMVDAIKVSNLTPEYDVYL 286

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           WT++I+G+  N  VR A+ +F+ M+  G+ PN+ T  SLL+A SS+  L  G   H+  I
Sbjct: 287 WTTLISGFTQNLQVREAISVFRDMELSGLLPNNFTYSSLLNASSSILSLDLGEQFHSRVI 346

Query: 341 KQNLECEVIVETALIDMYAKCNLVKL-SFQVFARTSKKKTVPWNAILAGCVHNGLARKAV 399
              LE ++ +  AL+DMY KC+ +   + +VF   +    + W +++AG     L   + 
Sbjct: 347 IVGLEDDLYIGNALVDMYMKCSHITTNAVKVFREITSPNVMCWTSLIAGFAEKRL-EDSF 405

Query: 400 ELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459
           +LF +M    V PN  T++++L A +    L   M +H ++I+      + V+  L+D Y
Sbjct: 406 QLFAEMQAAGVRPNSFTMSAILGACSKTRSLVPTMMLHGHIIKTKVDIDIAVANALVDTY 465

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
           +  G ++ A  +   + ++D   + ++ + A     GH   A+ +   M   G++ +E +
Sbjct: 466 AGVGMIDEAWSVIGTMNLRDS--ITYTCLAARLNQKGHHGMALKVLIHMCNDGIKMDEFS 523

Query: 520 FTSALHACSHGGLLDEGLDLFNFMLEN-HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578
             S L A +  G ++ G  L  + +++  Q C    +   +V L  + G + +A    + 
Sbjct: 524 LASFLSAAAGLGTMETGKQLHCYSVKSGFQRCHSVSN--SLVHLYSKCGSIHDANRAFKD 581

Query: 579 MPLKPTHAVWGALLGA 594
           +  +P    W  L+  
Sbjct: 582 IS-EPDAFSWNGLISG 596



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 198/417 (47%), Gaps = 38/417 (9%)

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           + + VL  C     ++ G  IH  +    L  ++   N L+ +Y K   V+ AR +FD M
Sbjct: 17  TCLRVLSFCNS-NSLKEGICIHSPIIKLGLQHDLYLTNNLLSLYAKTFGVHRARHLFDEM 75

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
             RDVV+WT++++ +       +AL LF +M   G  PN  T+ S L +C +L   +RG 
Sbjct: 76  PNRDVVSWTTILSSHTKTKHHSDALQLFDMMIGSGEYPNEFTLSSALRSCFALGEFERGM 135

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK--KTVPWNAILAGCVH 391
            +H   +K  LE    V T+L++ Y KC    +         K     V W  +L+  V 
Sbjct: 136 QIHCSAVKLGLEMNRFVGTSLVEFYTKCGCCSVEAWKLLSLVKDGGDVVSWTTMLSSLVE 195

Query: 392 NGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEV 451
           NG   +A E++ +M+   V PN+ T   LL A +    L     +H +LI +G    + +
Sbjct: 196 NGKWGEAFEIYVKMIESGVYPNEFTFVKLLGAVSSFLGLSYGKLLHAHLIMFGAELNLVL 255

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
            T ++D+YSKC  +  A K+ +  P  + D+ +W+ +I+G+  +     A+S+F++M  S
Sbjct: 256 KTAVVDMYSKCRRMVDAIKVSNLTP--EYDVYLWTTLISGFTQNLQVREAISVFRDMELS 313

Query: 512 GVQPNEVTFTSALHACS-----------HGGLLDEGL--DLF--NFMLENHQTCSR---- 552
           G+ PN  T++S L+A S           H  ++  GL  DL+  N +++ +  CS     
Sbjct: 314 GLLPNNFTYSSLLNASSSILSLDLGEQFHSRVIIVGLEDDLYIGNALVDMYMKCSHITTN 373

Query: 553 ---------ADHYTCIVDLLG--RAGRLDEAYDLIRTMP---LKPTHAVWGALLGAC 595
                    + +  C   L+      RL++++ L   M    ++P      A+LGAC
Sbjct: 374 AVKVFREITSPNVMCWTSLIAGFAEKRLEDSFQLFAEMQAAGVRPNSFTMSAILGAC 430


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 195/553 (35%), Positives = 314/553 (56%), Gaps = 10/553 (1%)

Query: 112 YTYPIVIKACTDLAWRKL-GIA-LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           +T+  +++ C D   R + GI  +  ++L +GF ++   G+ L+   +  GE+  AR++F
Sbjct: 48  HTFSQLLRQCID--ERSISGIKNIQAQMLKSGFPVE-LSGSKLVDASLKCGEIGYARQLF 104

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
           D M E  +V+WN++I+ Y K+  +KEA+ ++  M+ + V PD  ++ SV  A   L   +
Sbjct: 105 DGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLPDEYTLSSVFKAFSDLSLEK 164

Query: 230 MGRMIHEL-VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
             +  H L V  G    N+   +ALVDMYVK G   EA+LV DR+ E+DVV  T++I GY
Sbjct: 165 EAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGY 224

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
           +  G+   A+  FQ M  E V+PN  T  S+L +C +L  +  G+ +H   +K   E  +
Sbjct: 225 SQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESAL 284

Query: 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE 408
             +T+L+ MY +C+LV  S  VF        V W ++++G V NG    A+  FR+M+ +
Sbjct: 285 ASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSLISGLVQNGREETALIEFRKMMRD 344

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
            V+PN  TL+S L   + LA  ++   +H  + +YGF       +GLI++Y KCG  + A
Sbjct: 345 SVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMA 404

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
             +F    + + D++  + +I  Y  +G G  A+ LF+ M+  G+QPN+VT  S L AC+
Sbjct: 405 RLVFD--TLSEVDVISLNTMIYSYAQNGFGREALELFERMINLGLQPNDVTVLSVLLACN 462

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
           + GL++EG +LF+   ++    +  DHY C+VD+LGRAGRL+EA  LI T    P   +W
Sbjct: 463 NSGLVEEGCELFDSFRKDKIMLTN-DHYACMVDMLGRAGRLEEAEMLI-TEVTNPDLVLW 520

Query: 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648
             LL AC +H  VE+ E   + + E+ P + G  +LLS LY++  +WK    ++  M E 
Sbjct: 521 RTLLSACKVHRKVEMAERITRKILEIAPGDEGTLILLSNLYASTGKWKRVIEMKSKMKEM 580

Query: 649 GLRKAPAHSLIEV 661
            L+K PA S +E+
Sbjct: 581 KLKKNPAMSWVEI 593



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 152/503 (30%), Positives = 262/503 (52%), Gaps = 7/503 (1%)

Query: 12  TTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVRILFD 68
           TTH   +L++Q    +SI+G K + A ++ SG       S LV A    G +   R LFD
Sbjct: 46  TTHTFSQLLRQCIDERSISGIKNIQAQMLKSGFPVELSGSKLVDASLKCGEIGYARQLFD 105

Query: 69  EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
            M ER    +N+++  Y ++  S ++++M+  M+      PD YT   V KA +DL+  K
Sbjct: 106 GMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMIS-NNVLPDEYTLSSVFKAFSDLSLEK 164

Query: 129 LGIALHGRVLITGFDM-DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
                HG  +I G ++ + FVG+ L+ MY+ FG+ + A+ V D + E  VV    LI GY
Sbjct: 165 EAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGY 224

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            +     EA+  F  ML   V+P+  +  SVL +CG LK+I  G++IH L+        +
Sbjct: 225 SQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESAL 284

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
           A+  +L+ MY++C  V+++ LVF  +   + VTWTS+I+G   NG    AL  F+ M  +
Sbjct: 285 ASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSLISGLVQNGREETALIEFRKMMRD 344

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
            V+PNS T+ S L  CS+L   + GR +H    K   + +    + LI++Y KC    ++
Sbjct: 345 SVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMA 404

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
             VF   S+   +  N ++     NG  R+A+ELF +M+   ++PND T+ S+L A    
Sbjct: 405 RLVFDTLSEVDVISLNTMIYSYAQNGFGREALELFERMINLGLQPNDVTVLSVLLACNNS 464

Query: 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
             +++   +     +   +   +    ++D+  + G LE A  + +E+   + D+V+W  
Sbjct: 465 GLVEEGCELFDSFRKDKIMLTNDHYACMVDMLGRAGRLEEAEMLITEVT--NPDLVLWRT 522

Query: 488 IIAGYGMHGHGETAVSLFKEMVQ 510
           +++   +H   E A  + +++++
Sbjct: 523 LLSACKVHRKVEMAERITRKILE 545


>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
 gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
          Length = 526

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 175/527 (33%), Positives = 298/527 (56%), Gaps = 37/527 (7%)

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           GF  D  VGN LI MY    E+  A KVF+++   ++VSWN LI+G+ +     +A+ V 
Sbjct: 3   GFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVL 62

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
             M ++G EP+  +  ++L +C                                   +K 
Sbjct: 63  SLMQEAGFEPNEVTYSNLLASC-----------------------------------IKA 87

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
             V+ AR +FD++S   V TW ++++GY      ++ + LF+ MQ + V+P+  T+  +L
Sbjct: 88  RDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVIL 147

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
           S+CS L  L  GR +H+ +++  L  ++ V + L+DMY+KC  + ++  +F + +++  V
Sbjct: 148 SSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVV 207

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYL 440
            WN+I++G   + L ++A + F+QM    + P +++  S++ + + L+ +     IH  +
Sbjct: 208 CWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQV 267

Query: 441 IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET 500
           ++ G+   V V + LID+Y+KCG+++ A   F  + +K+  IV W+ +I GY  +G G+ 
Sbjct: 268 MKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKN--IVAWNEMIHGYAQNGLGDK 325

Query: 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560
           AV LF+ M+ +  +P+ VTF + L  CSH GL+D+ +  FN M  ++     A+HYTC++
Sbjct: 326 AVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYTCLI 385

Query: 561 DLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620
           D LGRAGR  E   LI  MP K    +W  LL ACV+H N ELG+ AA+ LF ++P+NP 
Sbjct: 386 DALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPKNPS 445

Query: 621 NYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNILTA 667
            YVLLS +Y+++ R  DA  VR +M  +G+ K   +S I+ ++ + A
Sbjct: 446 PYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSWIDQKDGVRA 492



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 122/411 (29%), Positives = 208/411 (50%), Gaps = 28/411 (6%)

Query: 46  FTHLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           +++L +S ++A   V + R +FD++S  S   +NT++  Y Q     D++++F  M +  
Sbjct: 77  YSNLLASCIKAR-DVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRM-QHQ 134

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
              PD  T  +++ +C+ L     G  +H   +      D FV + L+ MY   G++  A
Sbjct: 135 NVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIA 194

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
           R +F+ M E  VV WN++ISG   ++  KEA   F  M ++G+ P  +S  S++ +C  L
Sbjct: 195 RSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRL 254

Query: 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI 285
             I  GR IH  V      +N+   +AL+DMY KCG++++ARL FD M  +++V W  MI
Sbjct: 255 SSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMI 314

Query: 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345
           +GYA NG    A+ LF+ M     +P+++T  ++L+ CS    + +  +    +++ +  
Sbjct: 315 HGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFN-SMENSYG 373

Query: 346 CEVIVE--TALIDMYAKC-NLVKLSFQVFARTSKKKTVPWNAILAGCV--HNG-LARKAV 399
              + E  T LID   +    V++   +     K   + W  +LA CV  HN  L + A 
Sbjct: 374 IIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAA 433

Query: 400 E-LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
           E LFR      ++P + +       Y +L+      NI+  L R+G  S V
Sbjct: 434 EHLFR------IDPKNPS------PYVLLS------NIYASLGRHGDASAV 466



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           R GF S   V   LID+Y+KC  ++ A K+F  +P     IV W+++I G+G  G    A
Sbjct: 1   RKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLP--SVTIVSWNILITGFGQEGSCAKA 58

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHAC 527
           V +   M ++G +PNEVT+++ L +C
Sbjct: 59  VEVLSLMQEAGFEPNEVTYSNLLASC 84


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 193/525 (36%), Positives = 285/525 (54%), Gaps = 4/525 (0%)

Query: 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF 200
           G+  + F+ N LI +Y        A  VF  +   +V SW  +++ + +N       + F
Sbjct: 5   GWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFF 64

Query: 201 DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260
             ML  G+ P    +   L AC   +EI +GR I   + G  + +      ALV +Y K 
Sbjct: 65  RGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKL 124

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320
           G   +A  VF RMS RDVV W++M+  YA NG  R ALGLF+ M  +GV PN +T+ S L
Sbjct: 125 GHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGL 184

Query: 321 SACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380
            AC+SL  L+ G  +H     Q ++  V+V TAL+++Y KC  ++ + + F +  +K  V
Sbjct: 185 DACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVV 244

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH--C 438
            W+AI A    N   R A+ +  +M +E + PN  T  S+L A A +A L+Q   IH   
Sbjct: 245 AWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERI 304

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           +++  G  S V V T L+++YSKCG+L  A  +F +I     D+V+W+ +IA    HG  
Sbjct: 305 HVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIA--HLDLVLWNSLIATNAQHGQT 362

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
           E A+ LF+ M   G+QP  +TFTS L ACSH G+LD+G   F   + +H     A+H+ C
Sbjct: 363 EKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGC 422

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
           +VDLLGRAG + ++ DL+  MP +P    W A LGAC  + N++    AA+ LF+L+P  
Sbjct: 423 MVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRK 482

Query: 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
              YVLLS +Y+   RW D   +R  M      K    S IEV++
Sbjct: 483 RAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKD 527



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 122/416 (29%), Positives = 212/416 (50%), Gaps = 4/416 (0%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F  +  ++ F +  ++  +A+N         F GML  G  NP      I + ACTD  
Sbjct: 32  VFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQG-INPGEVGISIFLSACTDAR 90

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
              +G ++   +L TG + ++ V   L+++Y   G    A  VF  M    VV+W+ +++
Sbjct: 91  EITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVA 150

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
            Y +N + +EAL +F  M   GV P+  ++VS L AC  L ++  G ++H+ V    +  
Sbjct: 151 AYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQS 210

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305
            +    ALV++Y KCG +  A   F ++ E++VV W+++   YA N   R+A+ +   M 
Sbjct: 211 GVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMD 270

Query: 306 FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW--TIKQNLECEVIVETALIDMYAKCNL 363
            EG+ PNS T  S+L AC+++  LK+GR +H     +   LE +V V TAL++MY+KC  
Sbjct: 271 LEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGN 330

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           + L+  +F + +    V WN+++A    +G   KA+ELF +M +E ++P   T  S+L A
Sbjct: 331 LALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFA 390

Query: 424 YAILADLQQAMNIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
            +    L Q        I  +G     E    ++D+  + G +  +  +   +P +
Sbjct: 391 CSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFE 446



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 155/290 (53%), Gaps = 6/290 (2%)

Query: 49  LRSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG 105
           ++++LV  YG   H ++   +F  MS R    ++ ++  YA+NG   ++L +F  M  L 
Sbjct: 113 VQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQM-DLD 171

Query: 106 EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAA 165
              P+  T    + AC  L   + G  +H RV   G      VG  L+ +Y   G ++AA
Sbjct: 172 GVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAA 231

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL 225
            + F  + E +VV+W+ + + Y +N   ++A+ V   M   G+ P+  + VSVL AC  +
Sbjct: 232 AEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAI 291

Query: 226 KEIEMGRMIHEL--VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTS 283
             ++ GR IHE   V GG L  ++    ALV+MY KCG++  A  +FD+++  D+V W S
Sbjct: 292 AALKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNS 351

Query: 284 MINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
           +I   A +G    AL LF+ M+ EG++P  +T  S+L ACS    L +GR
Sbjct: 352 LIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGR 401


>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 189/535 (35%), Positives = 301/535 (56%), Gaps = 4/535 (0%)

Query: 129 LGIALHGRVLIT-GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           LG A H ++L T       F+ N L+ MY     + +A+ + +     SVV+W  LI+G 
Sbjct: 24  LGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGS 83

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            +N     AL+ F  ML   V P+  +   VL A   L+    G+ +H L     L  ++
Sbjct: 84  VQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDV 143

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
               ++ DMY K G +N+A  VFD M  R++ TW + I+   L+G   +++  F  +   
Sbjct: 144 FVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRV 203

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           G +P+S+T  + L+ACS    L  G  LH + I+      V V   LID Y KC  V+ S
Sbjct: 204 GGKPDSITFCAFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECS 263

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
             VF R  ++ +V W++++A  V N    KA  LF +   E +EP D  ++S+L A A L
Sbjct: 264 EMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGL 323

Query: 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
           ++++   ++    ++      + V++ L+D+Y KCGS+++A + F+ +P  ++++V W+ 
Sbjct: 324 SEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMP--ERNLVSWNA 381

Query: 488 IIAGYGMHGHGETAVSLFKEMVQS-GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
           ++ GY   GH   AV+L +EM  + G+ P+ V+   AL ACS  G L  G+ +F  M E 
Sbjct: 382 LLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKER 441

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
           +      +HY C+VDLLGRAG ++ AYD I+ MP  PT ++WGALLGAC +HG  ELG++
Sbjct: 442 YGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLGACRMHGKPELGKL 501

Query: 607 AAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           AA+ LFEL+P++ GN+V+LS +++A  RW++   VR+ M E G++K    S I V
Sbjct: 502 AAEKLFELDPKDSGNHVVLSNMFAATGRWEEVTVVRNEMKEVGIKKGAGFSWITV 556



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 144/474 (30%), Positives = 229/474 (48%), Gaps = 9/474 (1%)

Query: 33  KQLHAFIITS--GPLFTHLRSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           +  HA I+ +   P    L + LV  Y    H+++ +++ +    RS   +  ++    Q
Sbjct: 26  RAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQ 85

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NG    +L  F  ML      P+++T+P V+KA T L     G  LH   +  G   D F
Sbjct: 86  NGCFVSALLHFSDMLS-DCVRPNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVF 144

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           VG  +  MY   G +  A KVFD M   ++ +WN  IS    +   +++++ F  +L+ G
Sbjct: 145 VGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVG 204

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
            +PD  +  + L AC     +  G  +H  +     G+N++  N L+D Y KCG V  + 
Sbjct: 205 GKPDSITFCAFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSE 264

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           +VFDRM ER+ V+W+S+I  Y  N +   A  LF   + E + P    + S+L AC+ L 
Sbjct: 265 MVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLS 324

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            ++ GRS+ A  +K  +E  + V +AL+DMY KC  +  + Q F    ++  V WNA+L 
Sbjct: 325 EIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLG 384

Query: 388 GCVHNGLARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLI-RYGF 445
           G  H G A KAV L  +M     + P+  +L   L A +   DL+  M I   +  RYG 
Sbjct: 385 GYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGV 444

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
               E    L+D+  + G +E A+     +P     I +W  ++    MHG  E
Sbjct: 445 EPGPEHYACLVDLLGRAGMVECAYDFIKRMPFP-PTISIWGALLGACRMHGKPE 497


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 216/574 (37%), Positives = 308/574 (53%), Gaps = 19/574 (3%)

Query: 105 GEYNPDNYTYPIVIKACTDL----AWRKLGIALHGRVLITGF--DMDTFVGNCLIAMYMN 158
           G +   ++T   V++A + L    A  +LG   H   L  G       F  N L++MY  
Sbjct: 158 GGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYAR 217

Query: 159 FGEVKAARKVFDAM--WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVV 216
            G V  A+++F         VV+WNT++S   ++    EA+     M+  GV PD  +  
Sbjct: 218 LGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFA 277

Query: 217 SVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM-- 273
           S LPAC  L+ +++GR +H  ++    L  N    +ALVDMY     V +AR VFD +  
Sbjct: 278 SALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPD 337

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRG 332
           S + +  W +MI GYA  G    AL LF  M+ E G  P   T+ S+L AC+        
Sbjct: 338 SGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGK 397

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
            ++H + +K+ +     V+ AL+DMYA+     ++ ++FA       V WN ++ GCV  
Sbjct: 398 EAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQ 457

Query: 393 GLARKAVELFRQM--LVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
           G    A +L R+M  L E  V PN  TL +LLP  AILA   +   IH Y +R+   + V
Sbjct: 458 GHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDV 517

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            V + L+D+Y+KCG L  +  +F  +P   ++ + W+V+I  YGMHG G  A  LF  M 
Sbjct: 518 AVGSALVDMYAKCGCLALSRAVFDRLP--RRNTITWNVLIMAYGMHGLGGEATVLFDRMT 575

Query: 510 QSG-VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
            SG  +PNEVTF +AL ACSH G++D GL LF+ M  +H      D   C+VD+LGRAGR
Sbjct: 576 ASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGR 635

Query: 569 LDEAYDLIRTMPLKPTH-AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
           LDEAY ++ +M       + W  +LGAC +H NV LGE+A + L ELEPE   +YVLL  
Sbjct: 636 LDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCN 695

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +YSA  +W  A  VR  M  +G+ K P  S IEV
Sbjct: 696 IYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEV 729


>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 589

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 191/535 (35%), Positives = 295/535 (55%), Gaps = 10/535 (1%)

Query: 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           G++LH   L TG   D  V N +I +Y   G V  AR++FD M + ++VSW+ +ISGY +
Sbjct: 22  GLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMSDRNLVSWSAIISGYDQ 81

Query: 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAA 249
                 AL +F  M    + P+     SV+ AC  L  +  G  +H      +LG    +
Sbjct: 82  TGQPLLALNLFSQMR---IVPNEYVFASVISACASLTALSQGLQVH--AQSLKLGCVSVS 136

Query: 250 W--NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
           +  NAL+ MY+KCG   +A LV + MSE + V++ ++I G+  N      +  F++M+ +
Sbjct: 137 FVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVENQQPEKGIEAFKVMRQK 196

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           G  P+  T   LL  C+S     RG  LH   IK NLE    +   +I MY+K NL++ +
Sbjct: 197 GFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLEDSAFIGNVIITMYSKFNLIEEA 256

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML-VEVVEPNDATLNSLLPAYAI 426
            +VF    +K  + WN ++  C       +A+ +FR ML V  V+P+D T   +L A A 
Sbjct: 257 EKVFGLIKEKDLISWNTLVTACCFCKDHERALRVFRDMLDVCFVKPDDFTFAGVLAACAG 316

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
           LA ++    IH +LIR      V VS  L+++Y+KCGS+++++ +F      D+++V W+
Sbjct: 317 LASIRHGKQIHGHLIRTRQYQDVGVSNALVNMYAKCGSIKNSYDVFRRT--SDRNLVSWN 374

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
            IIA +G HG G  A+  F++M   G+ P+ VTF   L AC+H GL++EG   FN M E 
Sbjct: 375 TIIAAFGNHGLGARALEHFEKMKTVGIHPDSVTFVGLLTACNHAGLVEEGQVYFNSMEEA 434

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
           +      +H++C++DLLGRAGRL EA + +  +P      + G+LL AC +HG++ +GE 
Sbjct: 435 YGIFPNIEHFSCLIDLLGRAGRLQEAEEYMEKLPFGHDPIILGSLLSACRLHGDMVIGEH 494

Query: 607 AAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            A  L +L+P     YVLLS LY++   W        ++   GL+K P HSLI+V
Sbjct: 495 LATQLLKLQPVTTSPYVLLSNLYASDEMWGGVAEAWKMLKYSGLKKEPGHSLIDV 549



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 139/479 (29%), Positives = 233/479 (48%), Gaps = 12/479 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSS-LVRAYGHVSNV---RILFDEMSERS 74
           L+   A  K+      LHA  + +G L   + S+ ++  Y    NV   R +FDEMS+R+
Sbjct: 9   LLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMSDRN 68

Query: 75  SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
              ++ ++  Y Q G    +L +F  M       P+ Y +  VI AC  L     G+ +H
Sbjct: 69  LVSWSAIISGYDQTGQPLLALNLFSQM----RIVPNEYVFASVISACASLTALSQGLQVH 124

Query: 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAK 194
            + L  G    +FV N LI+MYM  G    A  V + M E + VS+N LI+G+ +N   +
Sbjct: 125 AQSLKLGCVSVSFVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVENQQPE 184

Query: 195 EALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           + +  F  M + G  PD  +   +L  C    +   G  +H  +    L  +    N ++
Sbjct: 185 KGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLEDSAFIGNVII 244

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ-LMQFEGVRPNS 313
            MY K   + EA  VF  + E+D+++W +++       D   AL +F+ ++    V+P+ 
Sbjct: 245 TMYSKFNLIEEAEKVFGLIKEKDLISWNTLVTACCFCKDHERALRVFRDMLDVCFVKPDD 304

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            T   +L+AC+ L  ++ G+ +H   I+     +V V  AL++MYAKC  +K S+ VF R
Sbjct: 305 FTFAGVLAACAGLASIRHGKQIHGHLIRTRQYQDVGVSNALVNMYAKCGSIKNSYDVFRR 364

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--YAILADLQ 431
           TS +  V WN I+A   ++GL  +A+E F +M    + P+  T   LL A  +A L +  
Sbjct: 365 TSDRNLVSWNTIIAAFGNHGLGARALEHFEKMKTVGIHPDSVTFVGLLTACNHAGLVEEG 424

Query: 432 QAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
           Q    +     YG    +E  + LID+  + G L+ A +   ++P     I++ S++ A
Sbjct: 425 QVY-FNSMEEAYGIFPNIEHFSCLIDLLGRAGRLQEAEEYMEKLPFGHDPIILGSLLSA 482



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 188/387 (48%), Gaps = 8/387 (2%)

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           ++ S+L  C  +K    G  +H       +  +I   N ++++Y KCG+V  AR +FD M
Sbjct: 5   AIGSLLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEM 64

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
           S+R++V+W+++I+GY   G    AL LF  M+   + PN     S++SAC+SL  L +G 
Sbjct: 65  SDRNLVSWSAIISGYDQTGQPLLALNLFSQMR---IVPNEYVFASVISACASLTALSQGL 121

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            +HA ++K        V  ALI MY KC L   +  V    S+   V +NA++AG V N 
Sbjct: 122 QVHAQSLKLGCVSVSFVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVENQ 181

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
              K +E F+ M  +   P+  T + LL       D  + M +HC +I+        +  
Sbjct: 182 QPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLEDSAFIGN 241

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ-SG 512
            +I +YSK   +E A K+F    IK+KD++ W+ ++         E A+ +F++M+    
Sbjct: 242 VIITMYSKFNLIEEAEKVFG--LIKEKDLISWNTLVTACCFCKDHERALRVFRDMLDVCF 299

Query: 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572
           V+P++ TF   L AC+    +  G  +   ++   Q          +V++  + G +  +
Sbjct: 300 VKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRTRQY-QDVGVSNALVNMYAKCGSIKNS 358

Query: 573 YDLIRTMPLKPTHAVWGALLGACVIHG 599
           YD+ R    +     W  ++ A   HG
Sbjct: 359 YDVFRRTSDRNL-VSWNTIIAAFGNHG 384



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 115/231 (49%), Gaps = 2/231 (0%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F  + E+    +NT++           +L++F  ML +    PD++T+  V+ AC  LA
Sbjct: 259 VFGLIKEKDLISWNTLVTACCFCKDHERALRVFRDMLDVCFVKPDDFTFAGVLAACAGLA 318

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
             + G  +HG ++ T    D  V N L+ MY   G +K +  VF    + ++VSWNT+I+
Sbjct: 319 SIRHGKQIHGHLIRTRQYQDVGVSNALVNMYAKCGSIKNSYDVFRRTSDRNLVSWNTIIA 378

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM-IHELVAGGRLG 244
            +  +     AL  F+ M   G+ PD  + V +L AC +   +E G++  + +     + 
Sbjct: 379 AFGNHGLGARALEHFEKMKTVGIHPDSVTFVGLLTACNHAGLVEEGQVYFNSMEEAYGIF 438

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDV 294
            NI  ++ L+D+  + G + EA    +++    D +   S+++   L+GD+
Sbjct: 439 PNIEHFSCLIDLLGRAGRLQEAEEYMEKLPFGHDPIILGSLLSACRLHGDM 489


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 185/502 (36%), Positives = 282/502 (56%), Gaps = 19/502 (3%)

Query: 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELV 238
           +W+++I  Y  ++    +   F+ M    V P+     S+L A   LK  ++   +H   
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 239 AGGRLGKNIAAWNALVDMYVKC---------------GSVNEARLVFDRMSERDVVTWTS 283
               L  ++   NAL++ Y K                  ++  + VFD M  RDVV+W +
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 284 MINGYALNGDVRNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ 342
           +I G+A NG    AL + + M   G ++P+S T+ S+L   +    + +G+ +H + ++ 
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRN 256

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
             + +V + ++LIDMYAKCN ++ S + F    +K  + WN+I+AGCV NG   + +  F
Sbjct: 257 GFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFF 316

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462
           R+ML E V+P   + +S++PA A L  L     +H  ++R GF     +++ L+D+Y+KC
Sbjct: 317 RRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKC 376

Query: 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
           G+++ A  +F    I  +D+V W+ II G  MHGH   AVSLF+ M++ GV+P  V F +
Sbjct: 377 GNIKMARYVFDR--IDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMA 434

Query: 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP-L 581
            L ACSH GL+DEG   FN M  +       +HY  + DLLGRAGRL+EAYD I  M  +
Sbjct: 435 VLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGV 494

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENV 641
           +PT +VW  LL AC  H +VEL E     L  ++ EN G YVL+S +YSA +RWKDA  +
Sbjct: 495 QPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARL 554

Query: 642 RDVMDEKGLRKAPAHSLIEVRN 663
           R  M +KGL+K PA S IEV N
Sbjct: 555 RIHMRKKGLKKTPACSWIEVGN 576



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 149/533 (27%), Positives = 248/533 (46%), Gaps = 30/533 (5%)

Query: 1   MNGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFII-TSGPLFTHLRSSLVRAYGH 59
           M+  + HT+ K    +++       + S    KQLHA I+ T G L  H  + LV +   
Sbjct: 1   MSNSTQHTISK----ILRKTPNKTLSVSTRQAKQLHAHIVKTKGTL--HSDNILVLSLYS 54

Query: 60  VS-----NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTY 114
                  ++ +     S      +++++K Y  +   H S   F  M  L    P+ + +
Sbjct: 55  NLNLLQHSLHLFNSLPSPPPPLAWSSIIKCYTSHSLLHLSFSSFNSMRSL-SVPPNRHVF 113

Query: 115 PIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNF-------------GE 161
           P ++KA T L   KL  +LH   +  G D D ++ N LI  Y  F             GE
Sbjct: 114 PSLLKASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGE 173

Query: 162 --VKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG-VEPDCASVVSV 218
             +   +KVFD M    VVSWNT+I+G+ +N    EAL +   M K+G ++PD  ++ S+
Sbjct: 174 SGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSI 233

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
           LP      ++  G+ IH          ++   ++L+DMY KC  +  +   F  +  +D 
Sbjct: 234 LPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDA 293

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           ++W S+I G   NG+    LG F+ M  E V+P +++  S++ AC+ L  L  GR LH  
Sbjct: 294 ISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGC 353

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398
            ++   +    + ++L+DMYAKC  +K++  VF R  K+  V W AI+ GC  +G A  A
Sbjct: 354 IVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDA 413

Query: 399 VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLID 457
           V LF  ML + V P      ++L A +    + +       + R +G    +E    + D
Sbjct: 414 VSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVAD 473

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
           +  + G LE A+   S +        VWS+++A    H   E A  +  +++ 
Sbjct: 474 LLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLS 526



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 196/387 (50%), Gaps = 21/387 (5%)

Query: 55  RAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTY 114
           R    +  V+ +FD M  R    +NTV+  +AQNG   ++L M   M + G+  PD++T 
Sbjct: 171 RGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTL 230

Query: 115 PIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
             ++    +      G  +HG  +  GFD D F+G+ LI MY     ++ + + F  +  
Sbjct: 231 SSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPR 290

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
              +SWN++I+G  +N      L  F  MLK  V+P   S  SV+PAC +L  + +GR +
Sbjct: 291 KDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQL 350

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294
           H  +       N    ++LVDMY KCG++  AR VFDR+ +RD+V WT++I G A++G  
Sbjct: 351 HGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHA 410

Query: 295 RNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE--- 351
            +A+ LF+ M  +GVRP  +   ++L+ACS    +  G     W    ++E +  +    
Sbjct: 411 LDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEG-----WRYFNSMERDFGIAPGL 465

Query: 352 ---TALIDMYAKCNLVKLSFQVFA--RTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
               A+ D+  +   ++ ++   +  R  +     W+ +LA C     A K+VEL  ++L
Sbjct: 466 EHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAAC----RAHKSVELAEKVL 521

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQA 433
            +++  +   +     AY +++++  A
Sbjct: 522 DKLLSVDSENMG----AYVLMSNIYSA 544


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 182/554 (32%), Positives = 322/554 (58%), Gaps = 13/554 (2%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           +I+ CT++   K    +H + +I+      F+   +I  +++   +  A +VF+   E  
Sbjct: 12  LIETCTNIQQLK---QIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQEPD 68

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIH 235
              +N +I  Y  +     A+ +++ M     +  D  +   V  AC     +E G+ +H
Sbjct: 69  GFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVH 128

Query: 236 ELVAGGRLGKNIAAW--NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
            ++   R+G  +  +  ++L++ Y+ CG +  A+ VFD    +DVV W ++I GYA  G 
Sbjct: 129 GVIV--RIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGM 186

Query: 294 VRNALGLF-QLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE-VIVE 351
           V ++ G+F ++++ + VRPN  T+  L+ AC     LK GR++H + +K  +  E V +E
Sbjct: 187 VLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLE 246

Query: 352 TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
            ALI++Y KC  +  + ++F    +K TV WN+++ G    G   + +EL R+M +  ++
Sbjct: 247 AALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLK 306

Query: 412 PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKI 471
           P+  T++ +L A A +        +H +  + G   V  + T LID+Y+KCG + +A K+
Sbjct: 307 PDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWDVF-IGTALIDMYAKCGFIGAARKV 365

Query: 472 FSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG 531
           F ++   ++++  W+ I++GY  HG  E+A+ LF EM +SG +P+ +TF + LHAC+H G
Sbjct: 366 FDQM--NERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSG 423

Query: 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGAL 591
           L++ G   F+ ML+ ++   R +HY C+VDLLGRAG L EA +LI+ M ++P   VWGAL
Sbjct: 424 LVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGAL 483

Query: 592 LGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651
           L AC IHGN+E+GE AA  + +L   + G+YV+L+ LY++ +R+   + VR++M EKG+ 
Sbjct: 484 LSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGIC 543

Query: 652 KAPAHSLIEVRNIL 665
           K+   S+IE+ +++
Sbjct: 544 KSHGCSMIEIGDVV 557



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 139/498 (27%), Positives = 262/498 (52%), Gaps = 16/498 (3%)

Query: 11  KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAY---GHVSNVRIL 66
           +T   V+ L++      +I   KQ+HA  I S   +T  + + ++ ++     +     +
Sbjct: 4   QTPKSVLALIE---TCTNIQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQV 60

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           F++  E   F+YN +++ Y+ +     ++ ++  M        D YTYP V KAC     
Sbjct: 61  FNQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFA 120

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
            + G  +HG ++  G+++D F+ + L+  YM  GE+  A++VFD      VV WN LI+G
Sbjct: 121 VEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITG 180

Query: 187 YFKNAYAKEALVVFDWMLK-SGVEPDCASVVSVLPACGYLKEIEMGRMIHE-LVAGGRLG 244
           Y +     ++  VF  M++   V P+  +++ ++ AC   K +++GR IH  ++    L 
Sbjct: 181 YARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLR 240

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
           + +    AL+++YVKCG ++ AR +FD + E++ V W S+I GY   G +   + L + M
Sbjct: 241 EGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREM 300

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364
               ++P+  T+  +LSAC+ +     G  +H +  K+ +  +V + TALIDMYAKC  +
Sbjct: 301 HLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGI-WDVFIGTALIDMYAKCGFI 359

Query: 365 KLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424
             + +VF + +++    WNAIL+G   +G A  A+ELF +M      P+  T  ++L A 
Sbjct: 360 GAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHAC 419

Query: 425 A---ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
           A   ++ + +Q  ++   L  Y     VE    ++D+  + G L+ A ++  ++ + + +
Sbjct: 420 AHSGLVENGKQYFDL--MLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELI-KMMVVEPN 476

Query: 482 IVVWSVIIAGYGMHGHGE 499
           +VVW  +++   +HG+ E
Sbjct: 477 VVVWGALLSACSIHGNIE 494



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 135/286 (47%), Gaps = 9/286 (3%)

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           ++ +L+  C+++  LK+   +HA +I  +L     + T +I+ +     +  + QVF +T
Sbjct: 8   SVLALIETCTNIQQLKQ---IHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQT 64

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQM-LVEVVEPNDATLNSLLPAYAILADLQQA 433
            +     +NA++     +     A+ ++ +M   + +  +  T   +  A A    +++ 
Sbjct: 65  QEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKG 124

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             +H  ++R G+     + + L++ Y  CG + +A ++F E     KD+V W+ +I GY 
Sbjct: 125 KEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDE--FDAKDVVFWNALITGYA 182

Query: 494 MHGHGETAVSLFKEMVQ-SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR 552
             G    +  +FKEMV+   V+PNE T    + AC     L  G  +  +M+++      
Sbjct: 183 RQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREG 242

Query: 553 ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL-GACVI 597
                 +++L  + G LD A  L   +P K T  VW +L+ G C I
Sbjct: 243 VKLEAALINLYVKCGYLDGARKLFDEIPEKNT-VVWNSLICGYCQI 287


>gi|302795736|ref|XP_002979631.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
 gi|300152879|gb|EFJ19520.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
          Length = 879

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 202/624 (32%), Positives = 336/624 (53%), Gaps = 13/624 (2%)

Query: 48  HLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRL 104
           ++ ++L+  YG  S+V   R +FD +  +    +N ++  YAQ      ++++F  ML  
Sbjct: 136 YVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLE 195

Query: 105 GEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNF-GEVK 163
           G    +  T+  V+ AC+ L  + L +A   ++ +   + D    +      +NF G   
Sbjct: 196 G-VKAERITFIGVLDACSKL--KDLEVAKLVKLCVEEREHDHLHDSSFATALVNFYGSCG 252

Query: 164 AARKVFDAMWEH--SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPA 221
              + F A   H   ++    +I+ Y +     EAL +F  ML  GV+ D  + ++VL A
Sbjct: 253 DLEQAFRAFSRHRLELILATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNA 312

Query: 222 CGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTW 281
           C   + +E GRMIH  +   R  +++ A NAL++MY KCGS+ EA  VF  M  RDV++W
Sbjct: 313 CSGPRGLEEGRMIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISW 372

Query: 282 TSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK 341
            ++I  +  +     AL L  LMQ +GV+ + ++  + L  C++   L +GR +H+W ++
Sbjct: 373 NTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCAASEALAKGRMIHSWIVE 432

Query: 342 QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA-ILAGCVHNGLARKAVE 400
             ++ +V+++ A++DMY  C     + +VF     +  V WNA I A      L+ +A+ 
Sbjct: 433 SGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKARDQVSWNAMITAYAAQPRLSSEALL 492

Query: 401 LFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
           LF+QM +    P+  +  + L A A  A L +   +H  +   G  S + V+  ++++Y+
Sbjct: 493 LFQQMQLHGFMPDVISFVAALSACAAQASLAEGKLLHDRIRETGLESNMTVANAVLNMYA 552

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520
           K GSL  A K+F ++P+   D++ W+ +I+ +  HGH +  +  F+ M   G  PN+VTF
Sbjct: 553 KSGSLVLARKMFGKMPL--PDVISWNGMISAFAQHGHADQVLRFFRRMNHEGKLPNDVTF 610

Query: 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCS-RADHYTCIVDLLGRAGRLDEAYDLIRTM 579
            S + ACSHGGL+ +G+ LF  +L +  T S RA+HY C+VDL+ RAG+LD A   I   
Sbjct: 611 VSVVSACSHGGLVKDGVQLFVSLLHDFPTISPRAEHYYCMVDLIARAGKLDAAEKFIAAA 670

Query: 580 PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAE 639
           PLKP   +   +LGA  +H +VE    +A+ L EL P+    YV+LS LY  V +  +  
Sbjct: 671 PLKPDRVIHSTMLGASKVHKDVERARKSAEHLMELTPDRSAAYVVLSNLYDEVGKKDEGA 730

Query: 640 NVRDVMDEKGLRKAPAHSLIEVRN 663
            +R +M EK +RK PA S I V+ 
Sbjct: 731 KIRRLMYEKNIRKEPAFSSIAVKR 754



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 167/600 (27%), Positives = 295/600 (49%), Gaps = 30/600 (5%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITS----GPLFTHLRSSLVRAY---GHVSNVRILFDEMS 71
           L+   A ++S+   K++HA I  S    GP    L   LVR Y   G + + +  FD M 
Sbjct: 4   LLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDL---LVRMYVDCGSLIDAKACFDRMP 60

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT-DLAWRKLG 130
            + +  +  +++ + Q G S  +L +F  M +L    P N  +  V+ AC+ D    + G
Sbjct: 61  VQDALTWARLIRAHGQIGDSEQALHLFRSM-QLEGVAPVNRNFVAVLGACSADPELLEEG 119

Query: 131 IALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190
             +HG +  T  + D +V   L+ MY     V+ ARKVFD +    VV WN +I+ Y + 
Sbjct: 120 RRIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQ 179

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI--- 247
            + ++A+ VF  ML  GV+ +  + + VL AC  LK++E+ +++ +L    R   ++   
Sbjct: 180 DHHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLV-KLCVEEREHDHLHDS 238

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
           +   ALV+ Y  CG + +A   F R    +++  T+MI  Y        AL LF++M  E
Sbjct: 239 SFATALVNFYGSCGDLEQAFRAFSR-HRLELILATAMITQYTQRERWDEALELFKVMLLE 297

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           GV+ + +   ++L+ACS    L+ GR +H +  +   +  V    ALI+MY KC  ++ +
Sbjct: 298 GVKLDRIACMAVLNACSGPRGLEEGRMIHGFMREIRFDRHVNAGNALINMYGKCGSLEEA 357

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
            +VF     +  + WN I+A    +    +A+ L   M ++ V+ +  +  + LP  A  
Sbjct: 358 VEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCAAS 417

Query: 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
             L +   IH +++  G  + V +   ++D+Y  C S + A ++F    +K +D V W+ 
Sbjct: 418 EALAKGRMIHSWIVESGIKADVMLDNAILDMYGSCKSTDDASRVFR--AMKARDQVSWNA 475

Query: 488 IIAGYGMHGH-GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM--- 543
           +I  Y         A+ LF++M   G  P+ ++F +AL AC+    L EG  L + +   
Sbjct: 476 MITAYAAQPRLSSEALLLFQQMQLHGFMPDVISFVAALSACAAQASLAEGKLLHDRIRET 535

Query: 544 -LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
            LE++ T + A     ++++  ++G L  A  +   MPL P    W  ++ A   HG+ +
Sbjct: 536 GLESNMTVANA-----VLNMYAKSGSLVLARKMFGKMPL-PDVISWNGMISAFAQHGHAD 589



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 137/486 (28%), Positives = 240/486 (49%), Gaps = 12/486 (2%)

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173
           Y  ++    D     LG  +H R+  +  D   F+G+ L+ MY++ G +  A+  FD M 
Sbjct: 1   YADLLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMP 60

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE-IEMGR 232
               ++W  LI  + +   +++AL +F  M   GV P   + V+VL AC    E +E GR
Sbjct: 61  VQDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGR 120

Query: 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNG 292
            IH ++ G  +  +      L+ MY KC SV +AR VFD +  + VV W +MI  YA   
Sbjct: 121 RIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQD 180

Query: 293 DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE--CEVIV 350
               A+ +F  M  EGV+   +T   +L ACS L  L+  + +     ++  +   +   
Sbjct: 181 HHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSF 240

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
            TAL++ Y  C  ++ +F+ F+R  + + +   A++          +A+ELF+ ML+E V
Sbjct: 241 ATALVNFYGSCGDLEQAFRAFSR-HRLELILATAMITQYTQRERWDEALELFKVMLLEGV 299

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           + +     ++L A +    L++   IH ++    F   V     LI++Y KCGSLE A +
Sbjct: 300 KLDRIACMAVLNACSGPRGLEEGRMIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVE 359

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           +F    ++ +D++ W+ IIA +G H     A+ L   M   GV+ ++++F +AL  C+  
Sbjct: 360 VFRS--MQHRDVISWNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCAAS 417

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588
             L +G  + ++++E   +  +AD      I+D+ G     D+A  + R M  +     W
Sbjct: 418 EALAKGRMIHSWIVE---SGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKAR-DQVSW 473

Query: 589 GALLGA 594
            A++ A
Sbjct: 474 NAMITA 479


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 196/584 (33%), Positives = 318/584 (54%), Gaps = 40/584 (6%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAM--YMNFGEVKAARKVFDAMWE 174
           +I+ C  L  R+L    HG ++ TG   D +  + L AM    +F  ++ ARKVFD + +
Sbjct: 36  LIERCVSL--RQLK-QTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPK 92

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVF-DWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
            +  +WNTLI  Y        ++  F D + +S   P+  +   ++ A   +  + +G+ 
Sbjct: 93  PNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQS 152

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           +H +     +G ++   N+L+  Y  CG ++ A  VF  + E+DVV+W SMING+   G 
Sbjct: 153 LHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGS 212

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
              AL LF+ M+ E V+ + +T+  +LSAC+ +  L+ GR + ++  +  +   + +  A
Sbjct: 213 PDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANA 272

Query: 354 LIDMYAKCNLVKLSFQVF--------------------------ART-----SKKKTVPW 382
           ++DMY KC  ++ + ++F                          AR       +K  V W
Sbjct: 273 MLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAW 332

Query: 383 NAILAGCVHNGLARKAVELFRQM-LVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441
           NA+++    NG   +A+ +F ++ L + ++ N  TL S L A A +  L+    IH Y+ 
Sbjct: 333 NALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIK 392

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           ++G      V++ LI +YSKCG LE + ++F+   ++ +D+ VWS +I G  MHG G  A
Sbjct: 393 KHGIRMNFHVTSALIHMYSKCGDLEKSREVFNS--VEKRDVFVWSAMIGGLAMHGCGNEA 450

Query: 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561
           V +F +M ++ V+PN VTFT+   ACSH GL+DE   LF+ M  N+       HY CIVD
Sbjct: 451 VDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVD 510

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGN 621
           +LGR+G L++A   I  MP+ P+ +VWGALLGAC IH N+ L E+A   L ELEP N G 
Sbjct: 511 VLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGA 570

Query: 622 YVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665
           +VLLS +Y+ + +W++   +R  M   GL+K P  S IE+  ++
Sbjct: 571 HVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMI 614



 Score =  248 bits (634), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 154/536 (28%), Positives = 268/536 (50%), Gaps = 43/536 (8%)

Query: 1   MNGPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHV 60
            + P+  T        I L+++  + + +   KQ H  +I +G       +S + A   +
Sbjct: 18  FSNPNQPTTNNERSRHISLIERCVSLRQL---KQTHGHMIRTGTFSDPYSASKLFAMAAL 74

Query: 61  SN------VRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTY 114
           S+       R +FDE+ + +SF +NT+++ YA       S+  FL M+   +  P+ YT+
Sbjct: 75  SSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTF 134

Query: 115 PIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174
           P +IKA  +++   LG +LHG  + +    D FV N LI  Y + G++ +A KVF  + E
Sbjct: 135 PFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKE 194

Query: 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI 234
             VVSWN++I+G+ +     +AL +F  M    V+    ++V VL AC  ++ +E GR +
Sbjct: 195 KDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQV 254

Query: 235 HELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL---- 290
              +   R+  N+   NA++DMY KCGS+ +A+ +FD M E+D VTWT+M++GYA+    
Sbjct: 255 CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDY 314

Query: 291 ---------------------------NGDVRNALGLFQLMQFE-GVRPNSLTIGSLLSA 322
                                      NG    AL +F  +Q +  ++ N +T+ S LSA
Sbjct: 315 EAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSA 374

Query: 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPW 382
           C+ +  L+ GR +H++  K  +     V +ALI MY+KC  ++ S +VF    K+    W
Sbjct: 375 CAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVW 434

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI-HCYLI 441
           +A++ G   +G   +AV++F +M    V+PN  T  ++  A +    + +A ++ H    
Sbjct: 435 SAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMES 494

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH 497
            YG +   +    ++D+  + G LE A K    +PI      VW  ++    +H +
Sbjct: 495 NYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIP-PSTSVWGALLGACKIHAN 549


>gi|302773754|ref|XP_002970294.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
 gi|300161810|gb|EFJ28424.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
          Length = 1096

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 211/658 (32%), Positives = 350/658 (53%), Gaps = 24/658 (3%)

Query: 17  IKLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEM-S 71
           +  V    A  ++A  +++ A +   G  L T L ++ V  +   G ++  R +F+ + S
Sbjct: 333 VTFVTVLRACTTLAQCEKIFARVKHLGLELDTTLGTAFVSTFAKLGDLAAARDVFENLGS 392

Query: 72  ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131
            R+   +  ++  YAQ G    +  ++  M    +  P+  T+  V+ +C          
Sbjct: 393 SRNVVSWTVMIWAYAQQGFIRAAFDLYKRM----DCEPNAVTFMAVMDSCLRPEDLPRAE 448

Query: 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
            +H  ++ +GF+ D  +  CL+ MY   G V +A  +F+ + E SVV+WN+++S +  N 
Sbjct: 449 QIHAHMVASGFESDVVLQVCLVTMYGKCGSVDSAWSIFENLKERSVVAWNSMLSAFASNG 508

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
             + +L +++ ML  G +PD  + ++VL AC  + E           A   L  +IAA N
Sbjct: 509 CYERSLKLYERMLLEGTKPDKITYLAVLDACQSVSEA------RRYAATFELELDIAARN 562

Query: 252 ALVDMYVKCGSVNEARLVFDRMS-ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           A V  Y +CGS+ EA+  FD +  + + VTW +MI+G A +G+ + AL  F  M+ EGVR
Sbjct: 563 AAVSAYARCGSLKEAKAAFDAIQWKNNAVTWNAMISGLAQHGESKQALECFWKMELEGVR 622

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
            NS+T  + L ACSSL  L RGR LHA  + +N+  E  +  A+I+MY KC  +  +   
Sbjct: 623 ANSVTYLASLEACSSLKDLTRGRQLHARILLENIH-EANLSNAVINMYGKCGSLDEAMDE 681

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F +  ++  + WN ++A    +G  R+A+E F+QM +E   P+ AT    + A   +  L
Sbjct: 682 FVKMPERDVISWNTMIATYAQHGSGRQALEFFKQMDLEGWTPDRATYLGAIDACGSVPSL 741

Query: 431 QQAMNIHCYLIRYG--FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
                IH  +            V+T L+ +Y++CGSL  A  +F       +++V WS +
Sbjct: 742 ALGKTIHSIVATAAPCLEQDPGVATALVTMYARCGSLHDAKSVFWRS--HSRNLVTWSNL 799

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL-DEGLDLFNFMLENH 547
           IA    HG    A+ LF+EM   G +P+ +TF++ + ACS  G++ D G  +F+ +   +
Sbjct: 800 IAACAQHGRENEALDLFREMQLQGTKPDALTFSTLVAACSRRGVVKDGGRRIFDALGRVY 859

Query: 548 QTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVA 607
              + A+HY C+V++LGRAG+L+EA  LI+ MP K + A+W ALL AC   G++E G  A
Sbjct: 860 PVSASAEHYGCMVEVLGRAGKLEEAEGLIQGMPRKASGAIWMALLAACNRRGDLERGIRA 919

Query: 608 AKWLFELEPEN-PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP-AHSLIEVRN 663
           A    +L+P +   +  +L++LY A  RW+DA  VR  ++ +  R+ P   S IEV N
Sbjct: 920 ANRAQQLDPGSFAASMAMLAELYGAAGRWEDAARVRKAVESRNARREPGGRSWIEVNN 977



 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 174/579 (30%), Positives = 293/579 (50%), Gaps = 31/579 (5%)

Query: 33  KQLHAFIITSGPLFTHLRSSLVRAYGHVSNV---RILFDEMSERSSFLYNTVMKMYAQNG 89
           K +H  ++ +G     + +++V  YG    V   + +F+ + ER+   +N ++   AQNG
Sbjct: 147 KAIHDCVVLAGMETQVVGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNG 206

Query: 90  ASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149
              D++++F  M   G   P++ T+  V+ AC++L     G + H R++ TGFD   FVG
Sbjct: 207 HCKDAMQVFQLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVG 266

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEH---SVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
           N L+ MY   G V  AR VF+ M      SV SW  +I+ +  N +  EA V+F  M   
Sbjct: 267 NSLVNMYGKCGSVDHARLVFEKMRLRDVLSVYSWTVIIAAFAHNGHLLEAFVLFYKMDLE 326

Query: 207 GVEPDCASVVSVLPACGYLKEIE--MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
           GV P+  + V+VL AC  L + E    R+ H    G  L   +    A V  + K G + 
Sbjct: 327 GVLPNKVTFVTVLRACTTLAQCEKIFARVKH---LGLELDTTLG--TAFVSTFAKLGDLA 381

Query: 265 EARLVFDRM-SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
            AR VF+ + S R+VV+WT MI  YA  G +R A  L++ M  E   PN++T  +++ +C
Sbjct: 382 AARDVFENLGSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRMDCE---PNAVTFMAVMDSC 438

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
                L R   +HA  +    E +V+++  L+ MY KC  V  ++ +F    ++  V WN
Sbjct: 439 LRPEDLPRAEQIHAHMVASGFESDVVLQVCLVTMYGKCGSVDSAWSIFENLKERSVVAWN 498

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           ++L+    NG   ++++L+ +ML+E  +P+  T  ++L A   +++ ++      Y   +
Sbjct: 499 SMLSAFASNGCYERSLKLYERMLLEGTKPDKITYLAVLDACQSVSEARR------YAATF 552

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
                +      +  Y++CGSL+ A   F  I  K+ + V W+ +I+G   HG  + A+ 
Sbjct: 553 ELELDIAARNAAVSAYARCGSLKEAKAAFDAIQWKN-NAVTWNAMISGLAQHGESKQALE 611

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF-NFMLEN-HQTCSRADHYTCIVD 561
            F +M   GV+ N VT+ ++L ACS    L  G  L    +LEN H+    A+    +++
Sbjct: 612 CFWKMELEGVRANSVTYLASLEACSSLKDLTRGRQLHARILLENIHE----ANLSNAVIN 667

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           + G+ G LDEA D    MP +   + W  ++     HG+
Sbjct: 668 MYGKCGSLDEAMDEFVKMPERDVIS-WNTMIATYAQHGS 705



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 178/631 (28%), Positives = 306/631 (48%), Gaps = 36/631 (5%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAYGH---VSNVRILFDEMSER---SSFLYNTVMKMY 85
           K  H  II +G   +  + +SLV  YG    V + R++F++M  R   S + +  ++  +
Sbjct: 248 KSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDHARLVFEKMRLRDVLSVYSWTVIIAAF 307

Query: 86  AQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMD 145
           A NG   ++  +F  M   G   P+  T+  V++ACT LA  +    +  RV   G ++D
Sbjct: 308 AHNGHLLEAFVLFYKMDLEGVL-PNKVTFVTVLRACTTLAQCE---KIFARVKHLGLELD 363

Query: 146 TFVGNCLIAMYMNFGEVKAARKVFDAMWE-HSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           T +G   ++ +   G++ AAR VF+ +    +VVSW  +I  Y +  + + A   FD   
Sbjct: 364 TTLGTAFVSTFAKLGDLAAARDVFENLGSSRNVVSWTVMIWAYAQQGFIRAA---FDLYK 420

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
           +   EP+  + ++V+ +C   +++     IH  +       ++     LV MY KCGSV+
Sbjct: 421 RMDCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFESDVVLQVCLVTMYGKCGSVD 480

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
            A  +F+ + ER VV W SM++ +A NG    +L L++ M  EG +P+ +T  ++L AC 
Sbjct: 481 SAWSIFENLKERSVVAWNSMLSAFASNGCYERSLKLYERMLLEGTKPDKITYLAVLDACQ 540

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF-ARTSKKKTVPWN 383
           S+   +R    +A T +  LE ++    A +  YA+C  +K +   F A   K   V WN
Sbjct: 541 SVSEARR----YAATFE--LELDIAARNAAVSAYARCGSLKEAKAAFDAIQWKNNAVTWN 594

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           A+++G   +G +++A+E F +M +E V  N  T  + L A + L DL +   +H  ++  
Sbjct: 595 AMISGLAQHGESKQALECFWKMELEGVRANSVTYLASLEACSSLKDLTRGRQLHARILLE 654

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
             +    +S  +I++Y KCGSL+ A   F ++P  ++D++ W+ +IA Y  HG G  A+ 
Sbjct: 655 N-IHEANLSNAVINMYGKCGSLDEAMDEFVKMP--ERDVISWNTMIATYAQHGSGRQALE 711

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH--YTCIVD 561
            FK+M   G  P+  T+  A+ AC     L  G  + + ++     C   D    T +V 
Sbjct: 712 FFKQMDLEGWTPDRATYLGAIDACGSVPSLALGKTIHS-IVATAAPCLEQDPGVATALVT 770

Query: 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF---ELEPEN 618
           +  R G L +A  +      +     W  L+ AC  HG     E  A  LF   +L+   
Sbjct: 771 MYARCGSLHDAKSVFWRSHSRNL-VTWSNLIAACAQHGR----ENEALDLFREMQLQGTK 825

Query: 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649
           P      + + +  RR    +  R + D  G
Sbjct: 826 PDALTFSTLVAACSRRGVVKDGGRRIFDALG 856



 Score =  229 bits (583), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 152/518 (29%), Positives = 253/518 (48%), Gaps = 14/518 (2%)

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
            A+  SL+  +  L+    +     Y  +++ C +      G  +H  +L +G  ++ ++
Sbjct: 4   AATELSLQTHINQLKKSSESLQPARYASLLQKCAEQKSAAAGKLVHQHILSSGCGVNRYL 63

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N LI MY   G ++ A +VF+ +   +V SW  LI+ Y K  + +E L  F  M   G 
Sbjct: 64  QNHLIFMYAKCGCLQDAVEVFELLPCPNVFSWTALITAYAKEGHLREVLGFFRKMQLDGT 123

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +PD     +VL AC     +  G+ IH+ V    +   +   NA+V++Y KCG V+EA+ 
Sbjct: 124 KPDAFVFSTVLTACSSAGALNEGKAIHDCVVLAGMETQVVG-NAIVNLYGKCGRVHEAKA 182

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLY 327
           VF+R+ ER++V+W ++I   A NG  ++A+ +FQLM  +G VRPN  T  S++ ACS+L 
Sbjct: 183 VFERLPERNLVSWNALIAANAQNGHCKDAMQVFQLMDLDGSVRPNDATFVSVVDACSNLL 242

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV---PWNA 384
            L RG+S H   I+   +  + V  +L++MY KC  V  +  VF +   +  +    W  
Sbjct: 243 DLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDHARLVFEKMRLRDVLSVYSWTV 302

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           I+A   HNG   +A  LF +M +E V PN  T  ++L A   LA   Q   I   +   G
Sbjct: 303 IIAAFAHNGHLLEAFVLFYKMDLEGVLPNKVTFVTVLRACTTLA---QCEKIFARVKHLG 359

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
                 + T  +  ++K G L +A  +F  +    +++V W+V+I  Y   G    A  L
Sbjct: 360 LELDTTLGTAFVSTFAKLGDLAAARDVFENLG-SSRNVVSWTVMIWAYAQQGFIRAAFDL 418

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564
           +K M     +PN VTF + + +C     L     +   M+ +    S      C+V + G
Sbjct: 419 YKRM---DCEPNAVTFMAVMDSCLRPEDLPRAEQIHAHMVASGFE-SDVVLQVCLVTMYG 474

Query: 565 RAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           + G +D A+ +   +  +   A W ++L A   +G  E
Sbjct: 475 KCGSVDSAWSIFENLKERSVVA-WNSMLSAFASNGCYE 511



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/329 (31%), Positives = 170/329 (51%), Gaps = 17/329 (5%)

Query: 11  KTTHL-VIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY---GHVSNVRIL 66
           K T+L V+   Q  +  +  A T +L   I          R++ V AY   G +   +  
Sbjct: 529 KITYLAVLDACQSVSEARRYAATFELELDIAA--------RNAAVSAYARCGSLKEAKAA 580

Query: 67  FDEMS-ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           FD +  + ++  +N ++   AQ+G S  +L+ F  M  L     ++ TY   ++AC+ L 
Sbjct: 581 FDAIQWKNNAVTWNAMISGLAQHGESKQALECFWKM-ELEGVRANSVTYLASLEACSSLK 639

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
               G  LH R+L+     +  + N +I MY   G +  A   F  M E  V+SWNT+I+
Sbjct: 640 DLTRGRQLHARILLENIH-EANLSNAVINMYGKCGSLDEAMDEFVKMPERDVISWNTMIA 698

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR--L 243
            Y ++   ++AL  F  M   G  PD A+ +  + ACG +  + +G+ IH +VA     L
Sbjct: 699 TYAQHGSGRQALEFFKQMDLEGWTPDRATYLGAIDACGSVPSLALGKTIHSIVATAAPCL 758

Query: 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
            ++     ALV MY +CGS+++A+ VF R   R++VTW+++I   A +G    AL LF+ 
Sbjct: 759 EQDPGVATALVTMYARCGSLHDAKSVFWRSHSRNLVTWSNLIAACAQHGRENEALDLFRE 818

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRG 332
           MQ +G +P++LT  +L++ACS    +K G
Sbjct: 819 MQLQGTKPDALTFSTLVAACSRRGVVKDG 847


>gi|413932452|gb|AFW67003.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 719

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 200/606 (33%), Positives = 306/606 (50%), Gaps = 10/606 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G + +   LFD M  ++   + T +    +NG    +  MF  ML  G   P+++     
Sbjct: 84  GRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESG-VAPNDFACNAA 142

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + AC       LG  +H   +  GF  D ++G+CLI +Y   G ++AA +VF  M    V
Sbjct: 143 LAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRMEAPDV 202

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V + +L+S   +N     A+ V   M + G++P+  ++ S+L  C       +G  IH  
Sbjct: 203 VGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPR----GIGEQIHGY 258

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +      +++ A  AL+D Y + G    A+ VF+ +  ++VV+W SM+     +G + +A
Sbjct: 259 MLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGRLDDA 318

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L +F  M  EGV+PN       LSAC S+     GR +H   IK++L  ++ V  AL+ M
Sbjct: 319 LRVFSEMISEGVQPNEFAFSIALSACGSVCL---GRQIHCSAIKRDLMTDIRVSNALLSM 375

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y +   V     V  +      V W A ++    NG + KAV L  QM  E   PND   
Sbjct: 376 YGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAF 435

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +S L + A LA L Q   +HC  ++ G    V     LI++YSKCG + SA   F  +  
Sbjct: 436 SSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLAFDVM-- 493

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
              D++ W+ +I G   HG    A+  F EM  S  +P++ TF S L  C+H GL+ EG 
Sbjct: 494 DTHDVMSWNSLIHGLAQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLVKEGE 553

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             F  M + +       HY C++D+LGR GR  EA  +I  MP +P   +W  LL +C +
Sbjct: 554 TFFRQMTDRYGLTPTPSHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLLASCKL 613

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           H N+++G++AA  L EL   +  +YVL+S LY+    W+DAE VR  MDE G++K    S
Sbjct: 614 HRNLDIGKLAADKLMELSERDSASYVLMSNLYAMHEEWRDAERVRRRMDEIGVKKDAGWS 673

Query: 658 LIEVRN 663
            IEV+N
Sbjct: 674 WIEVKN 679



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 144/512 (28%), Positives = 241/512 (47%), Gaps = 33/512 (6%)

Query: 157 MNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVV 216
           M  G +  A  +FD M   +VV+W T ISG  +N   + A  +F  ML+SGV P+  +  
Sbjct: 81  MKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPNDFACN 140

Query: 217 SVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW--NALVDMYVKCGSVNEARLVFDRMS 274
           + L AC     + +G  +H L    R G    AW  + L+++Y +CGS+  A  VF RM 
Sbjct: 141 AALAACAAAGALGLGEQVHSLAV--RAGFAADAWIGSCLIELYSRCGSLRAAEEVFRRME 198

Query: 275 ERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS 334
             DVV +TS+++    NG++  A+ +   M  +G++PN  T+ S+L+ C        G  
Sbjct: 199 APDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAECPRGI----GEQ 254

Query: 335 LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
           +H + +K      V   TALID Y++      +  VF     K  V W +++  C+ +G 
Sbjct: 255 IHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRDGR 314

Query: 395 ARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTG 454
              A+ +F +M+ E V+PN+   +  L A   +   +Q   IHC  I+   ++ + VS  
Sbjct: 315 LDDALRVFSEMISEGVQPNEFAFSIALSACGSVCLGRQ---IHCSAIKRDLMTDIRVSNA 371

Query: 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ 514
           L+ +Y + G +     +  +  I++ D+V W+  I+    +G  E AV+L  +M   G  
Sbjct: 372 LLSMYGRSGFVSELEAVLGK--IENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFT 429

Query: 515 PNEVTFTSALHACSHGGLLDEGLDLFNFMLE---NHQTCSRADHYTCIVDLLGRAGRLDE 571
           PN+  F+S L +C+   LL +G  L    L+   + + C+       ++++  + GR+  
Sbjct: 430 PNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTG----NALINMYSKCGRIGS 485

Query: 572 AYDLIRTMPLKPTHAV--WGALLGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLLSK 627
           A      M    TH V  W +L+     HG+  L   A +   E+   +  P +   LS 
Sbjct: 486 ARLAFDVM---DTHDVMSWNSLIHGLAQHGDANL---ALETFSEMCSSDWRPDDSTFLSV 539

Query: 628 LYSAVRRW--KDAEN-VRDVMDEKGLRKAPAH 656
           L         K+ E   R + D  GL   P+H
Sbjct: 540 LVGCNHAGLVKEGETFFRQMTDRYGLTPTPSH 571



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 186/412 (45%), Gaps = 13/412 (3%)

Query: 33  KQLHAFII-TSGPLFTHLRSSLV---RAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+H +++   G    +  ++L+     YG     + +F+ +  ++   + ++M++  ++
Sbjct: 253 EQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFENLESKNVVSWCSMMQLCIRD 312

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G   D+L++F  M+  G   P+ + + I + AC  +    LG  +H   +      D  V
Sbjct: 313 GRLDDALRVFSEMISEG-VQPNEFAFSIALSACGSVC---LGRQIHCSAIKRDLMTDIRV 368

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
            N L++MY   G V     V   +    +VSW   IS  F+N ++++A+ +   M   G 
Sbjct: 369 SNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGF 428

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
            P+  +  S L +C  L  +  GR +H L         +   NAL++MY KCG +  ARL
Sbjct: 429 TPNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARL 488

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
            FD M   DV++W S+I+G A +GD   AL  F  M     RP+  T  S+L  C+    
Sbjct: 489 AFDVMDTHDVMSWNSLIHGLAQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGL 548

Query: 329 LKRGRS-LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAIL 386
           +K G +     T +  L         +IDM  +      + ++      +   + W  +L
Sbjct: 549 VKEGETFFRQMTDRYGLTPTPSHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLL 608

Query: 387 AGC-VHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
           A C +H  L     +L    L+E+ E + A+   +   YA+  + + A  + 
Sbjct: 609 ASCKLHRNL--DIGKLAADKLMELSERDSASYVLMSNLYAMHEEWRDAERVR 658



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 185/387 (47%), Gaps = 32/387 (8%)

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           +D  +K G + +A  +FDRM  ++VV WT+ I+G   NG    A  +F  M   GV PN 
Sbjct: 77  LDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADMLESGVAPND 136

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
               + L+AC++   L  G  +H+  ++     +  + + LI++Y++C  ++ + +VF R
Sbjct: 137 FACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLRAAEEVFRR 196

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
                 V + ++++    NG   +AV++  QM  + ++PN+ T+ S+      LA+  + 
Sbjct: 197 MEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSM------LAECPRG 250

Query: 434 M--NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
           +   IH Y+++      V  ST LID YS+ G   +A  +F    ++ K++V W  ++  
Sbjct: 251 IGEQIHGYMLKVMGSQSVYASTALIDFYSRYGDFGTAKTVFEN--LESKNVVSWCSMMQL 308

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS 551
               G  + A+ +F EM+  GVQPNE  F+ AL AC   G +  G  +       H +  
Sbjct: 309 CIRDGRLDDALRVFSEMISEGVQPNEFAFSIALSAC---GSVCLGRQI-------HCSAI 358

Query: 552 RADHYT------CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605
           + D  T       ++ + GR+G + E   ++  +   P    W A + A   +G     E
Sbjct: 359 KRDLMTDIRVSNALLSMYGRSGFVSELEAVLGKIE-NPDLVSWTAAISANFQNG---FSE 414

Query: 606 VAAKWLFELEPE--NPGNYVLLSKLYS 630
            A   L ++  E   P +Y   S L S
Sbjct: 415 KAVALLLQMHSEGFTPNDYAFSSGLSS 441



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 120/256 (46%), Gaps = 8/256 (3%)

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
           +V+++   +D   K   +  +  +F R  +K  V W   ++GC  NG    A  +F  ML
Sbjct: 69  DVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEAAATMFADML 128

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466
              V PND   N+ L A A    L     +H   +R GF +   + + LI++YS+CGSL 
Sbjct: 129 ESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSLR 188

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526
           +A ++F    ++  D+V ++ +++    +G    AV +  +M + G+QPNE T TS L  
Sbjct: 189 AAEEVFRR--MEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPNEHTMTSMLAE 246

Query: 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           C  G     G  +  +ML+   + S     T ++D   R G    A  +   +  K    
Sbjct: 247 CPRG----IGEQIHGYMLKVMGSQS-VYASTALIDFYSRYGDFGTAKTVFENLESKNV-V 300

Query: 587 VWGALLGACVIHGNVE 602
            W +++  C+  G ++
Sbjct: 301 SWCSMMQLCIRDGRLD 316


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 216/574 (37%), Positives = 308/574 (53%), Gaps = 19/574 (3%)

Query: 105 GEYNPDNYTYPIVIKACTDL----AWRKLGIALHGRVLITGF--DMDTFVGNCLIAMYMN 158
           G +   ++T   V++A + L    A  +LG   H   L  G       F  N L++MY  
Sbjct: 156 GGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYAR 215

Query: 159 FGEVKAARKVFDAM--WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVV 216
            G V  A+++F         VV+WNT++S   ++    EA+     M+  GV PD  +  
Sbjct: 216 LGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFA 275

Query: 217 SVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM-- 273
           S LPAC  L+ +++GR +H  ++    L  N    +ALVDMY     V +AR VFD +  
Sbjct: 276 SALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPD 335

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRG 332
           S + +  W +MI GYA  G    AL LF  M+ E G  P   T+ S+L AC+        
Sbjct: 336 SGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGK 395

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
            ++H + +K+ +     V+ AL+DMYA+     ++ ++FA       V WN ++ GCV  
Sbjct: 396 EAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQ 455

Query: 393 GLARKAVELFRQM--LVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
           G    A +L R+M  L E  V PN  TL +LLP  AILA   +   IH Y +R+   + V
Sbjct: 456 GHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDV 515

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            V + L+D+Y+KCG L  +  +F  +P   ++ + W+V+I  YGMHG G  A  LF  M 
Sbjct: 516 AVGSALVDMYAKCGCLALSRAVFDRLP--RRNTITWNVLIMAYGMHGLGGEATVLFDRMT 573

Query: 510 QSG-VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
            SG  +PNEVTF +AL ACSH G++D GL LF+ M  +H      D   C+VD+LGRAGR
Sbjct: 574 ASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGR 633

Query: 569 LDEAYDLIRTMPLKPTH-AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
           LDEAY ++ +M       + W  +LGAC +H NV LGE+A + L ELEPE   +YVLL  
Sbjct: 634 LDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCN 693

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +YSA  +W  A  VR  M  +G+ K P  S IEV
Sbjct: 694 IYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEV 727


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  338 bits (866), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 216/574 (37%), Positives = 308/574 (53%), Gaps = 19/574 (3%)

Query: 105 GEYNPDNYTYPIVIKACTDL----AWRKLGIALHGRVLITGF--DMDTFVGNCLIAMYMN 158
           G +   ++T   V++A + L    A  +LG   H   L  G       F  N L++MY  
Sbjct: 156 GGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYAR 215

Query: 159 FGEVKAARKVFDAM--WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVV 216
            G V  A+++F         VV+WNT++S   ++    EA+     M+  GV PD  +  
Sbjct: 216 LGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFA 275

Query: 217 SVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM-- 273
           S LPAC  L+ +++GR +H  ++    L  N    +ALVDMY     V +AR VFD +  
Sbjct: 276 SALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPD 335

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRG 332
           S + +  W +MI GYA  G    AL LF  M+ E G  P   T+ S+L AC+        
Sbjct: 336 SGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGK 395

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
            ++H + +K+ +     V+ AL+DMYA+     ++ ++FA       V WN ++ GCV  
Sbjct: 396 EAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQ 455

Query: 393 GLARKAVELFRQM--LVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
           G    A +L R+M  L E  V PN  TL +LLP  AILA   +   IH Y +R+   + V
Sbjct: 456 GHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDV 515

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            V + L+D+Y+KCG L  +  +F  +P   ++ + W+V+I  YGMHG G  A  LF  M 
Sbjct: 516 AVGSALVDMYAKCGCLALSRAVFDRLP--RRNTITWNVLIMAYGMHGLGGEATVLFDRMT 573

Query: 510 QSG-VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
            SG  +PNEVTF +AL ACSH G++D GL LF+ M  +H      D   C+VD+LGRAGR
Sbjct: 574 ASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGR 633

Query: 569 LDEAYDLIRTMPLKPTH-AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
           LDEAY ++ +M       + W  +LGAC +H NV LGE+A + L ELEPE   +YVLL  
Sbjct: 634 LDEAYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCN 693

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +YSA  +W  A  VR  M  +G+ K P  S IEV
Sbjct: 694 IYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEV 727


>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
 gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
          Length = 711

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 205/605 (33%), Positives = 312/605 (51%), Gaps = 6/605 (0%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LFDEM  + +  +NT++  Y ++G    + +    M R G +  D YT+  ++K      
Sbjct: 58  LFDEMPHKDTVTWNTMITGYVESGNLGAAWEFLKSMKRRG-FQADGYTFGSILKGVAHAC 116

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
              LG  +H  ++  G++   + G+ L+ MY     V+ A  VF  M   + VSWN LI 
Sbjct: 117 RHDLGQQVHSLIVKIGYEQSVYAGSALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALID 176

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK 245
           G+ +      A  + D M K GV  +  +   +L      K  ++   +H  +    L  
Sbjct: 177 GFVQVGDRDTAFWLLDCMQKEGVRVEDGTFAPLLTLLDGDKFYKLTMQLHCKIIKHGLEF 236

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFD-RMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
             A  NA +  Y +CG + +A+ VFD  +  RD+VTW SM+  Y ++    +A  LF  M
Sbjct: 237 YNALCNATLTAYSECGLLEDAKRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEM 296

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN-- 362
           Q  G  P+  T   ++SAC +  +   G+S HA  IK+ LE  V +  ALI MY K N  
Sbjct: 297 QGFGFEPDIYTYTCVISACFAAAHKNYGKSFHALVIKRGLEESVTICNALITMYLKLNNK 356

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
            ++ +  +F     K  V WN+IL G    G +  A++LF  M   + E +D   +++L 
Sbjct: 357 SMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLR 416

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           + + LA LQ    IH   ++ GF S   V++ LI +YSKCG +E A K F +   +    
Sbjct: 417 SCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTTKESS-- 474

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
           + W+ I+  Y  HG G+ A+ LF  M +  V+ + VTF + L ACSH GL+++G  +   
Sbjct: 475 ITWNSIMFAYAQHGQGDVALDLFSIMREREVKLDHVTFVAVLTACSHVGLVEQGRCVLKS 534

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           M  ++    R +HY C VDL GRAG L+EA  LI +MP +P   V   LLGAC   GN+E
Sbjct: 535 MESDYGIPPRMEHYACAVDLFGRAGYLEEAKALIDSMPFQPNAMVLKTLLGACRACGNIE 594

Query: 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           L    A  L E+EPE    YV+LS +Y  ++RW D  +V  +M E+ ++K P  S IEV+
Sbjct: 595 LAAQVASQLLEVEPEEHCTYVILSNMYGHLKRWDDKASVTRLMRERKVKKVPGWSWIEVK 654

Query: 663 NILTA 667
           N + A
Sbjct: 655 NEVHA 659



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 138/514 (26%), Positives = 224/514 (43%), Gaps = 40/514 (7%)

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNF--GEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
           H +   +G     +V N ++  Y     G++  A K+FD M     V+WNT+I+GY ++ 
Sbjct: 22  HCQAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESG 81

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
               A      M + G + D  +  S+L    +    ++G+ +H L+      +++ A +
Sbjct: 82  NLGAAWEFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAGS 141

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           AL+DMY KC  V +A  VF  M  R+ V+W ++I+G+   GD   A  L   MQ EGVR 
Sbjct: 142 ALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRV 201

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
              T   LL+      + K    LH   IK  LE    +  A +  Y++C L++ + +VF
Sbjct: 202 EDGTFAPLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKRVF 261

Query: 372 -ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
                 +  V WN++L   + +     A  LF +M     EP+  T   ++ A    A  
Sbjct: 262 DGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHK 321

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG--SLESAHKIFSEIPIKDKDIVVWSVI 488
               + H  +I+ G    V +   LI +Y K    S+E+A  +F    +K KD V W+ I
Sbjct: 322 NYGKSFHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNLFH--SMKSKDRVSWNSI 379

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD-----------EGL 537
           + G+   G  E A+ LF  M  S  + ++  +++ L +CS   +L             G 
Sbjct: 380 LTGFSQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGF 439

Query: 538 DLFNFMLEN----HQTCS-RADHYTCIVDLLGRA--------------GRLDEAYDL--- 575
           D  +F+  +    +  C    D + C  D    +              G+ D A DL   
Sbjct: 440 DSNDFVASSLIFMYSKCGIIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSI 499

Query: 576 IRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
           +R   +K  H  + A+L AC   G VE G    K
Sbjct: 500 MREREVKLDHVTFVAVLTACSHVGLVEQGRCVLK 533


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 195/600 (32%), Positives = 322/600 (53%), Gaps = 5/600 (0%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGE-YNPDNYTYPIVIKACTDL 124
           LFD+M E++   +N++++ +++NG   ++ + F  +L  G+   PD  T   ++  C+  
Sbjct: 267 LFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGE 326

Query: 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLI 184
               +G+ +HG  +  G   +  V N LI MY   G +  A  +F  +   SVVSWN++I
Sbjct: 327 GNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMI 386

Query: 185 SGYFKNAYAKEALVVFD--WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242
             Y +  +  E   +    WM +  +E +  +++++LPAC    E+   R +H       
Sbjct: 387 GAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHS 446

Query: 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302
                   NA +  Y KCGS+  A  VF  M+ + V +W ++I G+A NGD   AL  + 
Sbjct: 447 FQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYF 506

Query: 303 LMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362
            M   G+ P+  +I SLL AC  L  L+ G+ +H + ++  LE    V  +L+ +Y  C+
Sbjct: 507 EMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCS 566

Query: 363 LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422
                   F R   K +V WNA+L+G   N L  +A+ LFRQML + +EP++  + S+L 
Sbjct: 567 KPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILG 626

Query: 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI 482
           A + L+ L     +HC+ ++   +    V+  L+D+Y+K G L  + +IF+ +    K++
Sbjct: 627 ACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRL--NGKEV 684

Query: 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542
             W+V+I G+G+HG G  AV LF++M +S  QP+  TF   L AC H GL+ EGL+    
Sbjct: 685 ASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQ 744

Query: 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
           M   ++     +HY C++D+LGRAGRL+EA + I  MP +P   +W +LL + + + ++E
Sbjct: 745 MQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLE 804

Query: 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           +GE  A+ L  LE     +Y+LLS LY+   +W     VR  M +  L+K    S IE+R
Sbjct: 805 MGEKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELR 864



 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 181/601 (30%), Positives = 313/601 (52%), Gaps = 19/601 (3%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTH--LRSSLVRAY---GHVSNVRILFDEMSER 73
           L+Q+    K++   ++L   +  S        L + L+  Y   G+    R++FD +  +
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNK 172

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
           + F +N ++  Y +N    +++  FL ++ + E+ PDN+T+P +IKACT      LG ++
Sbjct: 173 NLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSV 232

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           HG  +  G  MD FVGN +IA+Y   G +  A ++FD M E +++SWN+LI G+ +N + 
Sbjct: 233 HGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFW 292

Query: 194 KEALVVFDWMLKS--GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
            EA   F  +L+S  G+ PD A++V++LP C     +++G +IH +     L   +   N
Sbjct: 293 LEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCN 352

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ--LMQFEGV 309
           AL+DMY KCG ++EA ++F ++  + VV+W SMI  Y+  G V     L +   M+ E +
Sbjct: 353 ALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELM 412

Query: 310 RPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ 369
             N +TI +LL AC     L   R+LH ++++ + + + ++  A I  YAKC  +  +  
Sbjct: 413 EVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEH 472

Query: 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD 429
           VF   + K    WNA++ G   NG   KA++ + +M    + P+D ++ SLL A   L  
Sbjct: 473 VFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGL 532

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVII 489
           LQ    IH +++R G      V+  L+ +Y  C         F  +   DK+ V W+ ++
Sbjct: 533 LQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMG--DKNSVCWNAML 590

Query: 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549
           +GY  +     A+SLF++M+  G++P+E+   S L ACS    L  G ++  F L+N  +
Sbjct: 591 SGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKN--S 648

Query: 550 CSRADHYTC-IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN----VELG 604
               +   C ++D+  ++G L  +  +   +  K   A W  ++    +HG     VEL 
Sbjct: 649 LMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEV-ASWNVMITGFGVHGQGNKAVELF 707

Query: 605 E 605
           E
Sbjct: 708 E 708



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/433 (30%), Positives = 210/433 (48%), Gaps = 9/433 (2%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDN-YTYPI 116
           G +S   ILF ++  +S   +N+++  Y++ G   ++  +   M    E    N  T   
Sbjct: 362 GCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILN 421

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           ++ AC + +      ALHG  L   F     + N  IA Y   G +  A  VF  M   S
Sbjct: 422 LLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKS 481

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           V SWN +I G+ +N    +AL  +  M + G+ PD  S+VS+L ACG L  ++ G+ IH 
Sbjct: 482 VSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHG 541

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
            V    L  N     +L+ +Y  C      R  F+RM +++ V W +M++GY+ N     
Sbjct: 542 FVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNE 601

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           AL LF+ M  +G+ P+ + I S+L ACS L  L  G+ +H + +K +L  +  V  +L+D
Sbjct: 602 ALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMD 661

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MYAK   +  S ++F R + K+   WN ++ G   +G   KAVELF  M     +P+  T
Sbjct: 662 MYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFT 721

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIR----YGFLSVVEVSTGLIDIYSKCGSLESAHKIF 472
              +L A      + + +N   YL +    Y     +E    +ID+  + G L  A    
Sbjct: 722 FLGVLQACCHAGLVSEGLN---YLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFI 778

Query: 473 SEIPIKDKDIVVW 485
           +E+P ++ D  +W
Sbjct: 779 NEMP-EEPDAKIW 790


>gi|255545144|ref|XP_002513633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547541|gb|EEF49036.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 200/622 (32%), Positives = 329/622 (52%), Gaps = 9/622 (1%)

Query: 33  KQLHAFIITSGPLFTH-LRSSLVRAYGHVSNVR---ILFDEMSERSSFLYNTVMKMYAQN 88
           K++HA  I  G      L SSL+  Y    +      LF  M    +  + TV+    Q 
Sbjct: 140 KRIHASSIKHGFESNQILGSSLIDLYSRFDSTEDACKLFSYMDSGDTVSWTTVIASCVQA 199

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G    +L++++ ML   + + + +T+ + + A +     + G  +H   ++ G  ++  +
Sbjct: 200 GKCSHALRIYMEMLE-AQVSSNEFTF-VRLLAASSFIGLQYGKLIHAHAIVLGVKLNLVL 257

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
              L+ MY     ++ A KV     E+ V+ W  +ISG  +N   +EA+  F  M  SGV
Sbjct: 258 KTALVNMYSRCQRIEDAIKVSKLTPEYDVILWTAIISGLAQNMKFQEAVAAFHKMEISGV 317

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
                + +S+L  C  +  +++GR IH  V    L  ++   NALVDMY+KC  + E  L
Sbjct: 318 SASNFTYLSMLSVCISILSLDLGRQIHSRVIRTGLEDDVPVGNALVDMYMKCSCIVEHGL 377

Query: 269 -VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            +F  +   +V++WTS+I G+A +G  +++L LF  M+  GV+PNS T+  +L  CS++ 
Sbjct: 378 RMFRGIKSPNVISWTSLIAGFAEHGFQQDSLNLFMEMRTVGVQPNSFTLSIVLRVCSAIK 437

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
              +   LH   IK   + +V+V  AL+D YA    V  +++V    +++ ++ + ++  
Sbjct: 438 SPYQTLKLHGHIIKTKADYDVVVGNALVDAYAGSGRVDDAWRVVKDMNQRDSITYTSLAT 497

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
                G    A+ +   M    V+ +  +L     A A L  ++    +HCY ++ G   
Sbjct: 498 RLNQMGYHELALSVISHMFNADVKIDGFSLTCFFSASASLGRIETGKQLHCYSLKSGLSC 557

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            + V+ GLID+Y K G +  A + F+EI   + D+V W+ +I+G   +GH  +A+S F +
Sbjct: 558 CLSVANGLIDLYGKYGLVHEARRAFTEIT--EPDVVSWNGLISGLASNGHISSALSAFDD 615

Query: 508 MVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567
           M   G+QP+ +TF   L  CSHGGL+D GL  F+ M E H    ++DHY C+VD+LGRAG
Sbjct: 616 MRLRGIQPDSITFLLVLSTCSHGGLVDMGLQYFHSMREMHDVEPQSDHYVCLVDILGRAG 675

Query: 568 RLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
           RL+EA ++I TMPL+P  +++  LL AC IH N+ LGE  A+   EL P +P  ++LL K
Sbjct: 676 RLEEAMNIIETMPLEPDASIYKTLLAACSIHRNMNLGEDVARRGLELNPLDPAFHLLLVK 735

Query: 628 LYSAVRRWKDAENVRDVMDEKG 649
           LY    R+   E  R  + +KG
Sbjct: 736 LYDDCGRYDLGEKTRRSIKQKG 757



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 156/626 (24%), Positives = 298/626 (47%), Gaps = 48/626 (7%)

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           V + R  FDEM  R    +  ++  + +N    ++L +F  M+  G Y P+ +T+  +++
Sbjct: 70  VEHARQFFDEMPCRDVVSWTGILSAHIKNERHEEALDIFDFMVLSGPY-PNAFTFSSILR 128

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           +C  L     G  +H   +  GF+ +  +G+ LI +Y  F   + A K+F  M     VS
Sbjct: 129 SCFALGDFSYGKRIHASSIKHGFESNQILGSSLIDLYSRFDSTEDACKLFSYMDSGDTVS 188

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMI--HEL 237
           W T+I+   +      AL ++  ML++ V  +  + V +L A  ++  ++ G++I  H +
Sbjct: 189 WTTVIASCVQAGKCSHALRIYMEMLEAQVSSNEFTFVRLLAASSFIG-LQYGKLIHAHAI 247

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V G +L  N+    ALV+MY +C  + +A  V     E DV+ WT++I+G A N   + A
Sbjct: 248 VLGVKL--NLVLKTALVNMYSRCQRIEDAIKVSKLTPEYDVILWTAIISGLAQNMKFQEA 305

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           +  F  M+  GV  ++ T  S+LS C S+  L  GR +H+  I+  LE +V V  AL+DM
Sbjct: 306 VAAFHKMEISGVSASNFTYLSMLSVCISILSLDLGRQIHSRVIRTGLEDDVPVGNALVDM 365

Query: 358 YAKCN-LVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           Y KC+ +V+   ++F        + W +++AG   +G  + ++ LF +M    V+PN  T
Sbjct: 366 YMKCSCIVEHGLRMFRGIKSPNVISWTSLIAGFAEHGFQQDSLNLFMEMRTVGVQPNSFT 425

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
           L+ +L   + +    Q + +H ++I+      V V   L+D Y+  G ++ A ++  +  
Sbjct: 426 LSIVLRVCSAIKSPYQTLKLHGHIIKTKADYDVVVGNALVDAYAGSGRVDDAWRVVKD-- 483

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           +  +D + ++ +       G+ E A+S+   M  + V+ +  + T    A +  G ++ G
Sbjct: 484 MNQRDSITYTSLATRLNQMGYHELALSVISHMFNADVKIDGFSLTCFFSASASLGRIETG 543

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE------------------------- 571
             L  + L++  +C  +     ++DL G+ G + E                         
Sbjct: 544 KQLHCYSLKSGLSCCLSV-ANGLIDLYGKYGLVHEARRAFTEITEPDVVSWNGLISGLAS 602

Query: 572 ---------AYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV---AAKWLFELEPENP 619
                    A+D +R   ++P    +  +L  C   G V++G     + + + ++EP++ 
Sbjct: 603 NGHISSALSAFDDMRLRGIQPDSITFLLVLSTCSHGGLVDMGLQYFHSMREMHDVEPQSD 662

Query: 620 GNYVLLSKLYSAVRRWKDAENVRDVM 645
            +YV L  +     R ++A N+ + M
Sbjct: 663 -HYVCLVDILGRAGRLEEAMNIIETM 687



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 137/468 (29%), Positives = 238/468 (50%), Gaps = 14/468 (2%)

Query: 117 VIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176
           V+  C +L   K G+ +H  ++  G     ++ N L+++Y     V+ AR+ FD M    
Sbjct: 26  VVSLC-NLKSLKEGVCIHSPIIKLGLQDHLYLNNNLLSLYSKCFSVEHARQFFDEMPCRD 84

Query: 177 VVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHE 236
           VVSW  ++S + KN   +EAL +FD+M+ SG  P+  +  S+L +C  L +   G+ IH 
Sbjct: 85  VVSWTGILSAHIKNERHEEALDIFDFMVLSGPYPNAFTFSSILRSCFALGDFSYGKRIHA 144

Query: 237 LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRN 296
                    N    ++L+D+Y +  S  +A  +F  M   D V+WT++I      G   +
Sbjct: 145 SSIKHGFESNQILGSSLIDLYSRFDSTEDACKLFSYMDSGDTVSWTTVIASCVQAGKCSH 204

Query: 297 ALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           AL ++  M    V  N  T   LL+A SS   L+ G+ +HA  I   ++  ++++TAL++
Sbjct: 205 ALRIYMEMLEAQVSSNEFTFVRLLAA-SSFIGLQYGKLIHAHAIVLGVKLNLVLKTALVN 263

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY++C  ++ + +V   T +   + W AI++G   N   ++AV  F +M +  V  ++ T
Sbjct: 264 MYSRCQRIEDAIKVSKLTPEYDVILWTAIISGLAQNMKFQEAVAAFHKMEISGVSASNFT 323

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL-ESAHKIFSEI 475
             S+L     +  L     IH  +IR G    V V   L+D+Y KC  + E   ++F   
Sbjct: 324 YLSMLSVCISILSLDLGRQIHSRVIRTGLEDDVPVGNALVDMYMKCSCIVEHGLRMFR-- 381

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
            IK  +++ W+ +IAG+  HG  + +++LF EM   GVQPN  T +  L  CS      +
Sbjct: 382 GIKSPNVISWTSLIAGFAEHGFQQDSLNLFMEMRTVGVQPNSFTLSIVLRVCSAIKSPYQ 441

Query: 536 GLDLFNFMLENHQTCSRADHYTCI----VDLLGRAGRLDEAYDLIRTM 579
            L L   +++     ++AD+   +    VD    +GR+D+A+ +++ M
Sbjct: 442 TLKLHGHIIK-----TKADYDVVVGNALVDAYAGSGRVDDAWRVVKDM 484



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 167/320 (52%), Gaps = 7/320 (2%)

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
           +E  C+ VVS+   C  LK ++ G  IH  +    L  ++   N L+ +Y KC SV  AR
Sbjct: 19  LEDVCSKVVSL---CN-LKSLKEGVCIHSPIIKLGLQDHLYLNNNLLSLYSKCFSVEHAR 74

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
             FD M  RDVV+WT +++ +  N     AL +F  M   G  PN+ T  S+L +C +L 
Sbjct: 75  QFFDEMPCRDVVSWTGILSAHIKNERHEEALDIFDFMVLSGPYPNAFTFSSILRSCFALG 134

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
               G+ +HA +IK   E   I+ ++LID+Y++ +  + + ++F+      TV W  ++A
Sbjct: 135 DFSYGKRIHASSIKHGFESNQILGSSLIDLYSRFDSTEDACKLFSYMDSGDTVSWTTVIA 194

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
            CV  G    A+ ++ +ML   V  N+ T   LL A + +  LQ    IH + I  G   
Sbjct: 195 SCVQAGKCSHALRIYMEMLEAQVSSNEFTFVRLLAASSFIG-LQYGKLIHAHAIVLGVKL 253

Query: 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKE 507
            + + T L+++YS+C  +E A K+    P  + D+++W+ II+G   +   + AV+ F +
Sbjct: 254 NLVLKTALVNMYSRCQRIEDAIKVSKLTP--EYDVILWTAIISGLAQNMKFQEAVAAFHK 311

Query: 508 MVQSGVQPNEVTFTSALHAC 527
           M  SGV  +  T+ S L  C
Sbjct: 312 MEISGVSASNFTYLSMLSVC 331


>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
 gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
 gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
          Length = 598

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 185/491 (37%), Positives = 272/491 (55%), Gaps = 17/491 (3%)

Query: 180 WNTLISGYFKNAYAKEALVVFDWML-----KSGVEPDCASVVSVLPAC----GYLKEIEM 230
           +N LIS          A   F  +L      +G  PD  ++ + L AC    G L+E   
Sbjct: 80  FNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGLREGCQ 139

Query: 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290
              + E    G LG+ +   NALV  Y  CG   +AR VFD M+ERDVV+WT++++ +  
Sbjct: 140 AHAVAE--KAGFLGR-VPVQNALVTFYGACGQCGDARKVFDEMAERDVVSWTALLSAFTR 196

Query: 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIV 350
            G    ALG+   M    V PN +T+ S+L AC +L   + G+++H W  ++  E  +IV
Sbjct: 197 GGMFMEALGVLAEMD---VTPNEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIV 253

Query: 351 ETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVV 410
             AL+DMY KC  + L+ +VF     +  V W  +++G V      +A+E+F  M +  V
Sbjct: 254 GNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGV 313

Query: 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470
           +P+   L+++L A A L  L+    +H Y+ R G    V V T ++D+Y KCG L++A  
Sbjct: 314 KPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVS 373

Query: 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530
           IF E+P+K+  +  W+ +I G+ +HG G  A+  F  MV SG+ PNEVTF + L AC H 
Sbjct: 374 IFQEMPLKN--VSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHS 431

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           GL+ EG  LF  M ++++     DHY C+VDLLGRAG + EAYD+I+ MP++P    W  
Sbjct: 432 GLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMRPGVFTWVT 491

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LL AC  HG ++  +     + ELE    G YVLLS +Y+   RW D    R  M+EKG+
Sbjct: 492 LLSACQAHGRMDFSQQILMHIHELESSGNGIYVLLSNMYAVSDRWADVGKARGFMNEKGM 551

Query: 651 RKAPAHSLIEV 661
           +K P  S+IEV
Sbjct: 552 QKEPGSSVIEV 562



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 126/391 (32%), Positives = 199/391 (50%), Gaps = 6/391 (1%)

Query: 108 NPDNYTYPIVIKACTDLAWR-KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR 166
            PD YT P  +KAC  L    + G   H      GF     V N L+  Y   G+   AR
Sbjct: 114 RPDGYTLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDAR 173

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
           KVFD M E  VVSW  L+S + +     EAL V   M    V P+  ++ SVL ACG L 
Sbjct: 174 KVFDEMAERDVVSWTALLSAFTRGGMFMEALGVLAEM---DVTPNEVTLASVLVACGNLG 230

Query: 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMIN 286
               G+ +H          N+   NAL+DMYVKC  ++ AR VFD +  RD+V+WT MI+
Sbjct: 231 TARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMIS 290

Query: 287 GYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346
           G         AL +F  MQ  GV+P+ + + ++LSAC+SL  L+ GR +H +  ++ +E 
Sbjct: 291 GLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEW 350

Query: 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
           +V V T+++DMY KC  +  +  +F     K    WNA++ G   +G  R+A++ F +M+
Sbjct: 351 DVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFDRMV 410

Query: 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTG-LIDIYSKCGSL 465
              + PN+ T  ++L A      +Q+   +   + +   LS  E   G ++D+  + G +
Sbjct: 411 ASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLLGRAGLI 470

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
           + A+ +   +P++   +  W  +++    HG
Sbjct: 471 QEAYDVIKAMPMR-PGVFTWVTLLSACQAHG 500



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 203/414 (49%), Gaps = 20/414 (4%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPL-FTHLRSSLVRAYG---H 59
           P  +TLP       +L         +    Q HA    +G L    ++++LV  YG    
Sbjct: 115 PDGYTLPAALKACARL------GGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQ 168

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
             + R +FDEM+ER    +  ++  + + G   ++L    G+L   +  P+  T   V+ 
Sbjct: 169 CGDARKVFDEMAERDVVSWTALLSAFTRGGMFMEAL----GVLAEMDVTPNEVTLASVLV 224

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           AC +L   + G A+HG       +++  VGN L+ MY+   ++  AR+VFD +    +VS
Sbjct: 225 ACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVS 284

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
           W  +ISG  +     EAL VF+ M  SGV+PD   + +VL AC  L  +E GR +HE + 
Sbjct: 285 WTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIE 344

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
              +  ++    ++VDMYVKCG ++ A  +F  M  ++V +W ++ING+AL+G  R AL 
Sbjct: 345 RKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALD 404

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ-NLECEVIVETALIDMY 358
            F  M   G+ PN +T  ++L AC     ++ GR L     K   L         ++D+ 
Sbjct: 405 CFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMTKSYKLSPWEDHYGCMVDLL 464

Query: 359 AKCNLVKLSFQVF-ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVE 411
            +  L++ ++ V  A   +     W  +L+ C  +G     ++  +Q+L+ + E
Sbjct: 465 GRAGLIQEAYDVIKAMPMRPGVFTWVTLLSACQAHG----RMDFSQQILMHIHE 514



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 112/272 (41%), Gaps = 48/272 (17%)

Query: 381 PWNAILAGCVHNGLARKAVELFRQMLVEV-----VEPNDATLNSLLPAYAIL-ADLQQAM 434
           P+NA+++   H G    A   F  +LV         P+  TL + L A A L   L++  
Sbjct: 79  PFNALISSLTHAGDPSAAFRAFALLLVASGAGAGARPDGYTLPAALKACARLGGGLREGC 138

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
             H    + GFL  V V   L+  Y  CG    A K+F E  + ++D+V W+ +++ +  
Sbjct: 139 QAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKVFDE--MAERDVVSWTALLSAFTR 196

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG---------------LDL 539
            G    A+ +  EM    V PNEVT  S L AC + G    G               L +
Sbjct: 197 GGMFMEALGVLAEM---DVTPNEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIV 253

Query: 540 FNFMLENHQTCSRAD---------------HYTCIVDLLGRAGRLDEAYDLIRTMPL--- 581
            N +L+ +  C + D                +T ++  L +  R  EA ++   M +   
Sbjct: 254 GNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGV 313

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
           KP   V   +L AC   G +E G    +W+ E
Sbjct: 314 KPDKVVLSTVLSACASLGALESG----RWVHE 341


>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g47840
 gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
 gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 706

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 206/624 (33%), Positives = 317/624 (50%), Gaps = 9/624 (1%)

Query: 47  THLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGE 106
           +HLRS L+ A G++   R +FD+M       + +++K Y     S ++L +F  M R+ +
Sbjct: 45  SHLRS-LINA-GNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAM-RVVD 101

Query: 107 Y--NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKA 164
           +  +PD     +V+KAC   +    G +LH   + T      +VG+ L+ MY   G++  
Sbjct: 102 HAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDK 161

Query: 165 ARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224
           + +VF  M   + V+W  +I+G       KE L  F  M +S    D  +    L AC  
Sbjct: 162 SCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAG 221

Query: 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
           L++++ G+ IH  V        +   N+L  MY +CG + +   +F+ MSERDVV+WTS+
Sbjct: 222 LRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSL 281

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL 344
           I  Y   G    A+  F  M+   V PN  T  S+ SAC+SL  L  G  LH   +   L
Sbjct: 282 IVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGL 341

Query: 345 ECEVIVETALIDMYAKC-NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
              + V  +++ MY+ C NLV  S  +F     +  + W+ I+ G    G   +  + F 
Sbjct: 342 NDSLSVSNSMMKMYSTCGNLVSASV-LFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFS 400

Query: 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
            M     +P D  L SLL     +A ++    +H   + +G      V + LI++YSKCG
Sbjct: 401 WMRQSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCG 460

Query: 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA 523
           S++ A  IF E      DIV  + +I GY  HG  + A+ LF++ ++ G +P+ VTF S 
Sbjct: 461 SIKEASMIFGE--TDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISV 518

Query: 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP 583
           L AC+H G LD G   FN M E +      +HY C+VDLL RAGRL +A  +I  M  K 
Sbjct: 519 LTACTHSGQLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKK 578

Query: 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643
              VW  LL AC   G++E G  AA+ + EL+P      V L+ +YS+    ++A NVR 
Sbjct: 579 DDVVWTTLLIACKAKGDIERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRK 638

Query: 644 VMDEKGLRKAPAHSLIEVRNILTA 667
            M  KG+ K P  S I++++ ++A
Sbjct: 639 NMKAKGVIKEPGWSSIKIKDCVSA 662



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 151/549 (27%), Positives = 241/549 (43%), Gaps = 39/549 (7%)

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEA 196
           V I+   M  F  N  +   +N G ++AAR+VFD M    +VSW ++I  Y     + EA
Sbjct: 31  VRISNQVMVKFDPNSHLRSLINAGNLRAARQVFDKMPHGDIVSWTSIIKRYVTANNSDEA 90

Query: 197 LVVFDWM--LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALV 254
           L++F  M  +   V PD + +  VL ACG    I  G  +H       L  ++   ++L+
Sbjct: 91  LILFSAMRVVDHAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLL 150

Query: 255 DMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL 314
           DMY + G ++++  VF  M  R+ VTWT++I G    G  +  L  F  M       ++ 
Sbjct: 151 DMYKRVGKIDKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTYFSEMSRSEELSDTY 210

Query: 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFART 374
           T    L AC+ L  +K G+++H   I +     + V  +L  MY +C  ++    +F   
Sbjct: 211 TFAIALKACAGLRQVKYGKAIHTHVIVRGFVTTLCVANSLATMYTECGEMQDGLCLFENM 270

Query: 375 SKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434
           S++  V W +++      G   KAVE F +M    V PN+ T  S+  A A L+ L    
Sbjct: 271 SERDVVSWTSLIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGE 330

Query: 435 NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGM 494
            +HC ++  G    + VS  ++ +YS CG+L SA  +F    ++ +DI+ WS II GY  
Sbjct: 331 QLHCNVLSLGLNDSLSVSNSMMKMYSTCGNLVSASVLFQ--GMRCRDIISWSTIIGGYCQ 388

Query: 495 HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL----FNFMLENHQT- 549
            G GE     F  M QSG +P +    S L    +  +++ G  +      F LE + T 
Sbjct: 389 AGFGEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTV 448

Query: 550 -----------------------CSRAD--HYTCIVDLLGRAGRLDEAYDLIR---TMPL 581
                                    R D    T +++     G+  EA DL      +  
Sbjct: 449 RSSLINMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGF 508

Query: 582 KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG--NYVLLSKLYSAVRRWKDAE 639
           +P    + ++L AC   G ++LG      + E     P   +Y  +  L     R  DAE
Sbjct: 509 RPDSVTFISVLTACTHSGQLDLGFHYFNMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAE 568

Query: 640 NVRDVMDEK 648
            + + M  K
Sbjct: 569 KMINEMSWK 577


>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 208/602 (34%), Positives = 313/602 (51%), Gaps = 11/602 (1%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           LFDEMS R +  +NT++  Y  +G+   + +++  M   G   PD YT+  ++K      
Sbjct: 58  LFDEMSHRDTVTWNTMISGYVNSGSLGSAWELYKSMKSFG-LMPDAYTFGSILKGVACAC 116

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185
              +G  +H  ++  G++   + G+ L+ MY     V+ A  VF  +   + VSWN LI+
Sbjct: 117 RLDVGQQVHSLIVKMGYEEHVYAGSALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIA 176

Query: 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVAGGRLG 244
           G+        A  +   M + GV  D  +   +L      K  ++   +H +++  G   
Sbjct: 177 GFVLEGDHDTAFWLLRCMEEEGVRLDDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQF 236

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFD-RMSERDVVTWTSMINGYALNGDVRNALGLFQL 303
            N    NA +  Y +CGS+ +A  VFD  +  RD+VTW SM+  +  +     A  LF  
Sbjct: 237 DNTVC-NATITSYSQCGSLEDAERVFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLD 295

Query: 304 MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY--AKC 361
           MQ  G  P+  T  +++SACS   +   G+SLH   IK+ LE  V +  A+I MY  +  
Sbjct: 296 MQQFGFEPDIYTYTTIISACS---HKDNGKSLHGLVIKRGLEQLVPICNAVIAMYLESSS 352

Query: 362 NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
           N ++ +  VF     K  V WN+IL G    G +  A++LF  M   VV+ +    +++L
Sbjct: 353 NSMEDALNVFHSMESKDRVSWNSILTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVL 412

Query: 422 PAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD 481
            + + LA LQ    IH   ++ GF S   V++ LI +YSKCG +E A K F E   KD  
Sbjct: 413 RSCSDLATLQLGQQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSF-EKTAKDSS 471

Query: 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541
           I  W+ I+  Y  HG G+ A+ LF +M    V+ + +TF +AL ACSH GL+++G  L  
Sbjct: 472 IT-WNSIMFAYAQHGQGDVALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQGRYLLK 530

Query: 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNV 601
            M  ++    R +HY C VDL GRAG LDEA  LI +MP  P   VW  LLGAC   G++
Sbjct: 531 SMASDYGISPRMEHYACAVDLFGRAGYLDEAKALIESMPFDPDAMVWKTLLGACRACGDI 590

Query: 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           EL    A  L ELEPE    YV+LS +Y  ++RW +   +  +M E+ ++K P  S IEV
Sbjct: 591 ELAAQVASHLLELEPEEHCTYVILSNMYGHLKRWDEKACMARLMRERKVKKVPGWSWIEV 650

Query: 662 RN 663
           +N
Sbjct: 651 KN 652



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 126/490 (25%), Positives = 228/490 (46%), Gaps = 15/490 (3%)

Query: 134 HGRVLITGFDMDTFVGNCLIAMYM--NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNA 191
           H + +  G   D +  N +++ Y   + G +  A  +FD M     V+WNT+ISGY  + 
Sbjct: 22  HCQTIKLGRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSG 81

Query: 192 YAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
               A  ++  M   G+ PD  +  S+L        +++G+ +H L+      +++ A +
Sbjct: 82  SLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAGS 141

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311
           AL+DMY KC  V +A +VF  +  R+ V+W ++I G+ L GD   A  L + M+ EGVR 
Sbjct: 142 ALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRL 201

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +  T   LL+      + K    LH   IK  ++ +  V  A I  Y++C  ++ + +VF
Sbjct: 202 DDGTFSPLLTLLDEKKFYKLTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAERVF 261

Query: 372 -ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
                 +  V WN++LA  + +     A +LF  M     EP+  T  +++ A    +  
Sbjct: 262 DGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISA---CSHK 318

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIY--SKCGSLESAHKIFSEIPIKDKDIVVWSVI 488
               ++H  +I+ G   +V +   +I +Y  S   S+E A  +F  +  KD+  V W+ I
Sbjct: 319 DNGKSLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDALNVFHSMESKDR--VSWNSI 376

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548
           + G+   GH E A+ LF  M  + V  +   F++ L +CS    L  G  +    +++  
Sbjct: 377 LTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLGQQIHVLTVKSGF 436

Query: 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAA 608
             S     + ++ +  + G +++A         K +   W +++ A   HG    G+VA 
Sbjct: 437 E-SNDFVASSLIFMYSKCGMIEDARKSFEKTA-KDSSITWNSIMFAYAQHGQ---GDVAL 491

Query: 609 KWLFELEPEN 618
              F++  + 
Sbjct: 492 GLFFQMRDKK 501


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 217/685 (31%), Positives = 343/685 (50%), Gaps = 76/685 (11%)

Query: 8   TLP-KTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRIL 66
           TLP   THL  +  Q       I     L  F   S      L+ S    + +++    +
Sbjct: 25  TLPILETHL--QKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQI 82

Query: 67  FDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126
           F  +   + F+ NT+MK Y Q  +   ++ ++  ML       DNYTYPI+ ++C+    
Sbjct: 83  FSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLE-SNVAADNYTYPILFQSCSIRLA 141

Query: 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISG 186
              G  +   VL  GFD D ++ N LI MY   G +  ARKVFD      +VSWN++++G
Sbjct: 142 EFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAG 201

Query: 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
           Y      +EA  V+D M      P+                                 +N
Sbjct: 202 YVLVGNVEEAKDVYDRM------PE---------------------------------RN 222

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
           + A N+++ ++ K G+V EA  +F+ M ++D+V+W+++I+ Y  N     AL LF+ M  
Sbjct: 223 VIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNA 282

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
            G+  + + + S+LSACS L  +  G+ +H   +K  +E  V ++ ALI MY+ C  V  
Sbjct: 283 NGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVT 342

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKA---------------------------- 398
           + ++F+ +     + WN++++G V  G   KA                            
Sbjct: 343 AQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRF 402

Query: 399 ---VELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGL 455
              + LF++M +E  +P++  L S++ A   LA L Q   IH Y+ + G    + + T L
Sbjct: 403 TETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTL 462

Query: 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP 515
           I++Y K G +E A ++F    +++K +  W+ +I G  M+G  + ++  F EM + GV P
Sbjct: 463 INMYMKLGCVEDALEVFK--GLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTP 520

Query: 516 NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDL 575
           NE+TF + L AC H GL+DEG   FN M++ H+      HY C+VDLLGRAG L EA +L
Sbjct: 521 NEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEEL 580

Query: 576 IRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRW 635
           I +MP+ P  + WGALLGAC  +G+ E GE   + L EL P++ G  VLLS +Y++   W
Sbjct: 581 IESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNW 640

Query: 636 KDAENVRDVMDEKGLRKAPAHSLIE 660
            D   VR +M + G+ K P  S+IE
Sbjct: 641 VDVLEVRGMMRQHGVVKTPGCSMIE 665


>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 922

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 201/634 (31%), Positives = 339/634 (53%), Gaps = 11/634 (1%)

Query: 33  KQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQN 88
           +Q+H+ I  +G     ++ ++L+  Y   G +   R +F+EM ER+   +  ++  Y Q+
Sbjct: 172 EQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQH 231

Query: 89  GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148
           G S ++  +F  ++R G   P+  ++  ++ ACT+    + G+ LH  +   G + +  V
Sbjct: 232 GDSKEAFVLFQKLIRSGT-QPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLV 290

Query: 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           GN LI+MY   G +  AR+VFD +   + VSWN +I+GY    + +EA  +F  M + G 
Sbjct: 291 GNALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGY-GEGFMEEAFRLFRDMQQKGF 349

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +PD  +  S+L  C    ++  G+ +H  +       ++    AL+ MY KCGS+ EAR 
Sbjct: 350 QPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEADVTVATALISMYAKCGSLEEARK 409

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VF++M E++ V+W + I     +G  + A  +F+ M+ + V P+ +T  +LL++C+S   
Sbjct: 410 VFNQMPEKNAVSWNAFIACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPED 469

Query: 329 LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG 388
            +RGR +H    +  +    +V  ALI MY +C  +  + +VF R  ++    WNA++A 
Sbjct: 470 FERGRYIHGKIDQWGMLSNNLVANALISMYGRCGKLADAREVFYRIRRRDLGSWNAMIAA 529

Query: 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448
            V +G    A +LF +   E  + +  T  ++L A A L DL     IH  + + G    
Sbjct: 530 YVQHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDLDAGRKIHGLVEKAGLEKD 589

Query: 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508
           + + T LI +YSKCGSL  A+ +F  +  ++KD+V W+ ++A Y    HG+ A+ LF++M
Sbjct: 590 IRILTTLIKMYSKCGSLRDAYSVFKNV--QEKDVVCWNAMLAAYNHSDHGQDALKLFQQM 647

Query: 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
              GV P+  T+TS L+AC+  G ++ G   F+  L+     +   HY C+V  LGRA  
Sbjct: 648 RLEGVNPDSATYTSVLNACARLGAIEHG-KKFHTQLKEAAMETDTRHYACMVAALGRASL 706

Query: 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE-NPGNYVLLSK 627
           L EA + I  +  +    +W +LL AC IH NV L E A + L +++ + +P     L  
Sbjct: 707 LKEAEEFIEEISSESDALMWESLLVACRIHHNVGLAETAVEHLLDVKAQSSPAVCEQLMN 766

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +Y+A  RW+D   ++  M E GL  AP    IEV
Sbjct: 767 IYAAAGRWEDVSVIKATMREAGLL-APKSCTIEV 799



 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 190/623 (30%), Positives = 324/623 (52%), Gaps = 17/623 (2%)

Query: 18  KLVQQYAATKSIAGTKQLHAFIITSG-PLFTHLRSSLVRAY---GHVSNVRILFDEMSER 73
           + +Q+    KS+A  K++H  + ++      +L + L+  Y   G + +   +F  M ++
Sbjct: 56  RRLQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIEDANNVFQSMEDK 115

Query: 74  SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIAL 133
               +N ++  YA +G   +++ +F  M R G   P+  ++  ++ AC      + G  +
Sbjct: 116 DVVSWNAMISGYALHGRGQEAVDLFYQMQREG-LKPNQNSFISILSACQTPIVLEFGEQI 174

Query: 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
           H  +   G++ D  V   LI MY   G ++ ARKVF+ M E +VVSW  +ISGY ++  +
Sbjct: 175 HSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDS 234

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNAL 253
           KEA V+F  +++SG +P+  S  S+L AC    ++E G  +H  +    L + +   NAL
Sbjct: 235 KEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNAL 294

Query: 254 VDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS 313
           + MY +CGS+  AR VFD +   + V+W +MI GY   G +  A  LF+ MQ +G +P+ 
Sbjct: 295 ISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGYG-EGFMEEAFRLFRDMQQKGFQPDR 353

Query: 314 LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373
            T  SLL+ C+    L RG+ LH+  ++   E +V V TALI MYAKC  ++ + +VF +
Sbjct: 354 FTYASLLAICADRADLNRGKELHSQIVRTAWEADVTVATALISMYAKCGSLEEARKVFNQ 413

Query: 374 TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQA 433
             +K  V WNA +A C  +G  ++A ++F+QM  + V P+  T  +LL +     D ++ 
Sbjct: 414 MPEKNAVSWNAFIACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFITLLNSCTSPEDFERG 473

Query: 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
             IH  + ++G LS   V+  LI +Y +CG L  A ++F    I+ +D+  W+ +IA Y 
Sbjct: 474 RYIHGKIDQWGMLSNNLVANALISMYGRCGKLADAREVFYR--IRRRDLGSWNAMIAAYV 531

Query: 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA 553
            HG   +A  LF +    G + ++ TF + L A ++   LD G  +   ++E        
Sbjct: 532 QHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDLDAGRKIHG-LVEKAGLEKDI 590

Query: 554 DHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613
              T ++ +  + G L +AY + + +  K     W A+L A   + + + G+ A K LF+
Sbjct: 591 RILTTLIKMYSKCGSLRDAYSVFKNVQEKDV-VCWNAMLAA---YNHSDHGQDALK-LFQ 645

Query: 614 ---LEPENPGNYVLLSKLYSAVR 633
              LE  NP +    S L +  R
Sbjct: 646 QMRLEGVNPDSATYTSVLNACAR 668



 Score =  244 bits (622), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 135/398 (33%), Positives = 220/398 (55%), Gaps = 9/398 (2%)

Query: 205 KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVN 264
           K GV+ +       L  C   K +  G+ +H+ +   +   +I   N L+ MY KCGS+ 
Sbjct: 44  KRGVQANLNFYARRLQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIE 103

Query: 265 EARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324
           +A  VF  M ++DVV+W +MI+GYAL+G  + A+ LF  MQ EG++PN  +  S+LSAC 
Sbjct: 104 DANNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQ 163

Query: 325 SLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA 384
           +   L+ G  +H+   K   E +V V TALI+MY KC  ++L+ +VF    ++  V W A
Sbjct: 164 TPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTA 223

Query: 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           +++G V +G +++A  LF++++    +PN  +  S+L A     DL+Q + +H Y+ + G
Sbjct: 224 MISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAG 283

Query: 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504
               V V   LI +Y++CGSL +A ++F    ++  + V W+ +IAGYG  G  E A  L
Sbjct: 284 LEQEVLVGNALISMYARCGSLANARQVFDN--LRSPNRVSWNAMIAGYG-EGFMEEAFRL 340

Query: 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDL 562
           F++M Q G QP+  T+ S L  C+    L+ G +L + ++   +T   AD    T ++ +
Sbjct: 341 FRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIV---RTAWEADVTVATALISM 397

Query: 563 LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
             + G L+EA  +   MP K     W A +  C  HG+
Sbjct: 398 YAKCGSLEEARKVFNQMPEKNA-VSWNAFIACCCRHGS 434



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 160/303 (52%), Gaps = 18/303 (5%)

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
           G  QL+   GV+ N       L  C     L  G+ +H        E ++ +   LI MY
Sbjct: 37  GGVQLLGKRGVQANLNFYARRLQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMY 96

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
           +KC  ++ +  VF     K  V WNA+++G   +G  ++AV+LF QM  E ++PN  +  
Sbjct: 97  SKCGSIEDANNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFI 156

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           S+L A      L+    IH ++ + G+ S V VST LI++Y KCGSLE A K+F+E  ++
Sbjct: 157 SILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLELARKVFNE--MR 214

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
           ++++V W+ +I+GY  HG  + A  LF+++++SG QPN+V+F S L AC++   L++GL 
Sbjct: 215 ERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLK 274

Query: 539 LFNFM----LENHQTCSRADHYTCIVDLLGRAGRLDEA---YDLIRTMPLKPTHAVWGAL 591
           L  ++    LE       A     ++ +  R G L  A   +D +R+    P    W A+
Sbjct: 275 LHAYIKQAGLEQEVLVGNA-----LISMYARCGSLANARQVFDNLRS----PNRVSWNAM 325

Query: 592 LGA 594
           +  
Sbjct: 326 IAG 328


>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 189/535 (35%), Positives = 300/535 (56%), Gaps = 4/535 (0%)

Query: 129 LGIALHGRVLIT-GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           LG A H ++L T       F+ N L+ MY     + +A+ + +     SVV+W  LI+G 
Sbjct: 24  LGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGS 83

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            +N     AL+ F  ML   V P+  +   VL A   L+    G+ +H L     L  ++
Sbjct: 84  VQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDV 143

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
               ++ DMY K G +N+A  VFD M  R++ TW + I+   L+G   +++  F  +   
Sbjct: 144 FVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRV 203

Query: 308 GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367
           G +P+S+T    L+ACS    L  G  LH + I+      V V   LID Y KC  V+ S
Sbjct: 204 GGKPDSITFCXFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECS 263

Query: 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427
             VF R  ++ +V W++++A  V N    KA  LF +   E +EP D  ++S+L A A L
Sbjct: 264 EMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGL 323

Query: 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSV 487
           ++++   ++    ++      + V++ L+D+Y KCGS+++A + F+ +P  ++++V W+ 
Sbjct: 324 SEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMP--ERNLVSWNA 381

Query: 488 IIAGYGMHGHGETAVSLFKEMVQS-GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546
           ++ GY   GH   AV+L +EM  + G+ P+ V+   AL ACS  G L  G+ +F  M E 
Sbjct: 382 LLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKER 441

Query: 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEV 606
           +      +HY C+VDLLGRAG ++ AYD I+ MP  PT ++WGALLGAC +HG  ELG++
Sbjct: 442 YGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGALLGACRMHGKPELGKL 501

Query: 607 AAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           AA+ LFEL+P++ GN+V+LS +++A  RW++   VR+ M E G++K    S I V
Sbjct: 502 AAEKLFELDPKDSGNHVVLSNMFAATGRWEEVTVVRNEMKEVGIKKGAGFSWITV 556



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 144/474 (30%), Positives = 228/474 (48%), Gaps = 9/474 (1%)

Query: 33  KQLHAFIITS--GPLFTHLRSSLVRAYG---HVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
           +  HA I+ +   P    L + LV  Y    H+++ +++ +    RS   +  ++    Q
Sbjct: 26  RAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKLILELAPCRSVVTWTALIAGSVQ 85

Query: 88  NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
           NG    +L  F  ML      P+++T+P V+KA T L     G  LH   +  G   D F
Sbjct: 86  NGCFVSALLHFSDMLS-DCVRPNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVF 144

Query: 148 VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG 207
           VG  +  MY   G +  A KVFD M   ++ +WN  IS    +   +++++ F  +L+ G
Sbjct: 145 VGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVG 204

Query: 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR 267
            +PD  +    L AC     +  G  +H  +     G+N++  N L+D Y KCG V  + 
Sbjct: 205 GKPDSITFCXFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSE 264

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
           +VFDRM ER+ V+W+S+I  Y  N +   A  LF   + E + P    + S+L AC+ L 
Sbjct: 265 MVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCACAGLS 324

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            ++ GRS+ A  +K  +E  + V +AL+DMY KC  +  + Q F    ++  V WNA+L 
Sbjct: 325 EIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAEQAFNAMPERNLVSWNALLG 384

Query: 388 GCVHNGLARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLI-RYGF 445
           G  H G A KAV L  +M     + P+  +L   L A +   DL+  M I   +  RYG 
Sbjct: 385 GYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRAGDLKTGMKIFESMKERYGV 444

Query: 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
               E    L+D+  + G +E A+     +P     I +W  ++    MHG  E
Sbjct: 445 EPGPEHYACLVDLLGRAGMVECAYDFIKRMPFP-PTISIWGALLGACRMHGKPE 497


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 184/518 (35%), Positives = 289/518 (55%), Gaps = 14/518 (2%)

Query: 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVE 209
           N +++ Y  FG V  A K+FD   +    SWN ++SG  KN    E L  F  M  S V 
Sbjct: 85  NTILSGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVR 144

Query: 210 PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW--NALVDMYVKCGSVNEAR 267
           PD  +   ++P C    ++  G+ +H  +   ++  ++ A+    L+ MY + G + +AR
Sbjct: 145 PDNFTYAIIIPCC----DLGFGQQVHADIV--KVCSDLDAFIGTNLLRMYAEVGEIGDAR 198

Query: 268 LVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327
            VFD M  R +VTW +MI+ Y+  G    ++GLF+ +  EG+  +  T   +L+  ++ +
Sbjct: 199 KVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARW 258

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
            +     +H+  I++    +     AL+++Y+KC  V  + ++F     +  V W  I+ 
Sbjct: 259 QVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIV 318

Query: 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447
           G + +G   +A+ LF QM +  +EPN  T   LL A A     Q+  + H  ++++G L 
Sbjct: 319 GFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLG 378

Query: 448 V-VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFK 506
             V V + ++D+YSKCG +  A + F E+P  ++DI  W+ II GY  +G G  A+ L+ 
Sbjct: 379 ADVVVGSAVVDMYSKCGEMGDALRAFQEMP--ERDIASWNGIICGYAQNGAGMKALKLYN 436

Query: 507 EMV---QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563
           EMV    SG+ PNEVTF   L ACSH GLL EG   F  M++ H     A+HYTC+VDLL
Sbjct: 437 EMVLLGPSGIAPNEVTFVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLL 496

Query: 564 GRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623
           GRAG L EA  LI  +P+KP + +WGALLGAC +HG+V++    A+ L+  EP N  NYV
Sbjct: 497 GRAGLLQEAEALILALPIKPDNVMWGALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNYV 556

Query: 624 LLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           LL+  Y+ +  W +A  +R+VM+ +G+ K    S +E+
Sbjct: 557 LLANSYTDIGEWGEAVEIREVMEARGVEKTAGCSWVEI 594



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 140/483 (28%), Positives = 241/483 (49%), Gaps = 11/483 (2%)

Query: 19  LVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAYGHVSNVRILFDEMSERSSFLY 78
           L+Q Y  +++++   +L  F+     +  +   S    +G VS    LFD  S+R    +
Sbjct: 56  LLQAYINSQALSDAHKLLHFMPQPSVVSYNTILSGYFKFGLVSEAIKLFDGTSKRDCHSW 115

Query: 79  NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL 138
           N V+    +N    + L  F+ M R     PDN+TY I+I  C DL +   G  +H  ++
Sbjct: 116 NIVLSGCVKNHKLGEGLTHFMKM-RCSSVRPDNFTYAIIIPCC-DLGF---GQQVHADIV 170

Query: 139 ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALV 198
               D+D F+G  L+ MY   GE+  ARKVFD M    +V+WN +IS Y K     +++ 
Sbjct: 171 KVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIG 230

Query: 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           +F  + + G+  D  +   VL       ++     +H L+       +    NALV++Y 
Sbjct: 231 LFRQLXREGISADEYTYAIVLNEFAARWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYS 290

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           KCG V  A  +F+ + ++DVV+WT +I G+  +G +  A+ LF  MQ   + PNS T G 
Sbjct: 291 KCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGG 350

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQN-LECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
           LL AC+     ++GR  H   +K   L  +V+V +A++DMY+KC  +  + + F    ++
Sbjct: 351 LLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKCGEMGDALRAFQEMPER 410

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLV---EVVEPNDATLNSLLPAYAILADLQQAM 434
               WN I+ G   NG   KA++L+ +M++     + PN+ T   +L A +    L++  
Sbjct: 411 DIASWNGIICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVTFVGVLCACSHNGLLKEGY 470

Query: 435 NIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYG 493
           +    ++ ++      E  T ++D+  + G L+ A  +   +PIK  D V+W  ++    
Sbjct: 471 SYFKEMVDKHLIKPTAEHYTCMVDLLGRAGLLQEAEALILALPIK-PDNVMWGALLGACK 529

Query: 494 MHG 496
           +HG
Sbjct: 530 LHG 532



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/328 (19%), Positives = 135/328 (41%), Gaps = 49/328 (14%)

Query: 328 YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILA 387
           ++ +   LHA  +K  L   V     L+  Y     +  + ++     +   V +N IL+
Sbjct: 30  HMYKAPVLHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNTILS 89

Query: 388 GCVHNGLARKAVELFR-------------------------------QMLVEVVEPNDAT 416
           G    GL  +A++LF                                +M    V P++ T
Sbjct: 90  GYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFT 149

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
              ++P      DL     +H  +++        + T L+ +Y++ G +  A K+F  +P
Sbjct: 150 YAIIIPC----CDLGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMP 205

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
              + +V W+ +I+ Y  +G G+ ++ LF+++ + G+  +E T+   L+  +    + E 
Sbjct: 206 --SRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVFEA 263

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
           + + + ++E    CS       +V+L  + G +  A  L   +P +     W  ++   +
Sbjct: 264 MQVHSLIIER-GFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDV-VSWTVIIVGFL 321

Query: 597 IHGNVELGEVAAKWLF------ELEPEN 618
             G++E     A WLF      ++EP +
Sbjct: 322 QSGHME----EAMWLFYQMQLGDIEPNS 345


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 188/560 (33%), Positives = 303/560 (54%), Gaps = 38/560 (6%)

Query: 140 TGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVV 199
           T + +   +  C+++ +  F  +  A  VF+   E +++ WNT++ G   ++     L +
Sbjct: 13  TNYALSKLLELCVVSPH--FDGLPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEM 70

Query: 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA-------------------- 239
           +  M+  G  P+  +   +L +C   K  E GR IH  V                     
Sbjct: 71  YVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYAR 130

Query: 240 GGRL-----------GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGY 288
            GRL            +++ +  AL+  Y   G V  AR VFD ++ERDVV+W +MI GY
Sbjct: 131 NGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGY 190

Query: 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQN-LECE 347
             N     AL LF+ M    VRP+  T+ S+LSAC+    ++ GR +H      +     
Sbjct: 191 VENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSS 250

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
           + +  A I +Y+KC  V+++  +F   S K  V WN ++ G  H  L ++A+ LF++ML 
Sbjct: 251 LKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLR 310

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY--GFLSVVEVSTGLIDIYSKCGSL 465
               PND T+ S+LPA A L  +     IH Y+ +   G  +   + T LID+Y+KCG +
Sbjct: 311 SGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDI 370

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
           E+AH++F+ +    K +  W+ +I G+ MHG    A  LF  M ++G++P+++T    L 
Sbjct: 371 EAAHQVFNSM--MHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLS 428

Query: 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           ACSH GLLD G  +F  + +++    + +HY C++DLLG AG   EA ++I  MP++P  
Sbjct: 429 ACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDG 488

Query: 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645
            +W +LL AC +HGN+EL E  A+ L E+EPEN G+YVLLS +Y+   RW+D   +R+V+
Sbjct: 489 VIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVL 548

Query: 646 DEKGLRKAPAHSLIEVRNIL 665
           + KG++K P  S IE+ +++
Sbjct: 549 NGKGMKKVPGCSSIEIDSVV 568



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 155/494 (31%), Positives = 251/494 (50%), Gaps = 57/494 (11%)

Query: 66  LFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLA 125
           +F+   E +  ++NT+++  A +      L+M++ M+  G + P+ YT+P ++K+C    
Sbjct: 39  VFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXG-HVPNAYTFPFLLKSCAKSK 97

Query: 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAM------------------------------ 155
             + G  +H +V+  G ++D +    LI+M                              
Sbjct: 98  TFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALIT 157

Query: 156 -YMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214
            Y + G+V++ARKVFD + E  VVSWN +I+GY +N   +EAL +F  M+++ V PD  +
Sbjct: 158 GYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGT 217

Query: 215 VVSVLPACGYLKEIEMGRMIHELVAGGR-LGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           +VSVL AC     IE+GR IH LV      G ++   NA + +Y KCG V  A  +F+ +
Sbjct: 218 LVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGL 277

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
           S +DVV+W ++I GY      + AL LFQ M   G  PN +T+ S+L AC+ L  +  GR
Sbjct: 278 SCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGR 337

Query: 334 SLHAWTIK--QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVH 391
            +H +  K  + +     + T+LIDMYAKC  ++ + QVF     K    WNA++ G   
Sbjct: 338 WIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAM 397

Query: 392 NGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA----------ILADLQQAMNIHCYLI 441
           +G A  A +LF +M    +EP+D TL  LL A +          I   + Q  NI   L 
Sbjct: 398 HGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLE 457

Query: 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
            YG          +ID+    G  + A +I   +P+ + D V+W  ++    MHG+ E A
Sbjct: 458 HYGC---------MIDLLGHAGLFKEAEEIIHMMPM-EPDGVIWCSLLKACKMHGNLELA 507

Query: 502 VSLFKEMVQSGVQP 515
            S  +++++  ++P
Sbjct: 508 ESFAQKLME--IEP 519



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/415 (31%), Positives = 202/415 (48%), Gaps = 10/415 (2%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           ++L+  Y   G V + R +FD ++ER    +N ++  Y +N    ++L++F  M+R    
Sbjct: 153 TALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTN-V 211

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLI-TGFDMDTFVGNCLIAMYMNFGEVKAAR 166
            PD  T   V+ AC      +LG  +H  V    GF     + N  I +Y   G+V+ A 
Sbjct: 212 RPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIAS 271

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLK 226
            +F+ +    VVSWNTLI GY      KEAL++F  ML+SG  P+  +++SVLPAC +L 
Sbjct: 272 GLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLG 331

Query: 227 EIEMGRMIHELVAGGRLG--KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSM 284
            I++GR IH  +     G     A   +L+DMY KCG +  A  VF+ M  + + +W +M
Sbjct: 332 AIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAM 391

Query: 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL-HAWTIKQN 343
           I G+A++G    A  LF  M+  G+ P+ +T+  LLSACS    L  GR +  + T   N
Sbjct: 392 IFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYN 451

Query: 344 LECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELF 402
           +  ++     +ID+     L K + ++      +   V W ++L  C  +G    A E F
Sbjct: 452 ITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELA-ESF 510

Query: 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
            Q L+E+   N  +   L   YA     +    I   L   G   V   S+  ID
Sbjct: 511 AQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEID 565


>gi|414585599|tpg|DAA36170.1| TPA: hypothetical protein ZEAMMB73_453858 [Zea mays]
          Length = 829

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 224/681 (32%), Positives = 372/681 (54%), Gaps = 37/681 (5%)

Query: 10  PKTTHLVIKL-VQQYAATKSIAGTKQLHAFIIT---SGPLFTHLRSSLVRAY-------- 57
           P++ H      +   A T+ +   K +HA ++    S P    LR+SL+  Y        
Sbjct: 132 PRSDHYTYSCALTACARTRRLRLGKSVHAHLLRRARSLPDTAVLRNSLLNVYASCVRYRG 191

Query: 58  -GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLG-EYNPDNYT-- 113
            G V  VR LFD M +R++  +NT+   Y + G   ++L+MF+ ML  G +  P ++   
Sbjct: 192 DGSVDVVRRLFDAMPKRNAVSWNTLFGWYVKTGRPQEALEMFVRMLEDGIKPTPVSFVNV 251

Query: 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDM--DTFVGNCLIAMYMNFGEVKAARKVFDA 171
           +P V K   D +W      L+G ++  G +   D FV +  I M+   G+V++A +VF+ 
Sbjct: 252 FPAVAK--EDPSW---SFVLYGLLVKHGMEYVNDLFVVSSAIVMFSELGDVQSAWRVFEY 306

Query: 172 MWEHSVVSWNTLISGYFKNAYAKEAL-VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230
             + +   WNT+I+GY +N    EA+ +V   M+   V  D  + +S L A    ++  +
Sbjct: 307 AAKKNTEVWNTMITGYVQNGKFAEAMGLVIRLMVSKEVPLDVVTFLSALTAASQSQDGRL 366

Query: 231 GRMIHE-LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
           G+ +H  L+ G      +   NALV MY +CG+V  A  +FDR+ E+D+V+W +MI  + 
Sbjct: 367 GQQLHGYLIKGMHTTLPVILGNALVVMYSRCGNVQTAFELFDRLHEKDIVSWNTMITAFV 426

Query: 290 LNG-DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
            N  D+   L ++Q MQ  G   + +T+ ++LSA S+   L  G+  H++ I+  +E E 
Sbjct: 427 QNDFDLEGLLLVYQ-MQKSGFAADLVTLTAVLSAASNTGDLHIGKQAHSYLIRHGIEGEG 485

Query: 349 IVETALIDMYAKCNLVKLSFQVFAR--TSKKKTVPWNAILAGCVHNGLARKAVELFRQML 406
           + E+ LIDMYAK   ++++ +VF     +K+  V WNA++AG    G   +A+  FR M+
Sbjct: 486 L-ESYLIDMYAKSGRIEIAQRVFDDYGNAKRDEVTWNAMIAGYTQTGHPEQAILAFRAMI 544

Query: 407 VEVVEPNDATLNSLLPAYAILAD-LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSL 465
              +EP   TL S+LPA   L   L     IHC+ +R    + V V T L+D+YSKCG +
Sbjct: 545 EACLEPTSVTLASVLPACDPLGGGLCAGKQIHCFALRRCLDTNVFVGTALVDMYSKCGEI 604

Query: 466 ESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525
            +A  +F+++   +K  V ++ +I+G G HG G++A+SLF  M + G++P+ VTF +A+ 
Sbjct: 605 STAEHVFADM--TEKSTVSYTTMISGLGQHGFGKSALSLFYSMQEKGLKPDGVTFLAAIS 662

Query: 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTH 585
           AC++ GL+DEGL L+  M E         H  CIVD+L +AGR++EAY+ ++ +  +   
Sbjct: 663 ACNYSGLVDEGLALYRSM-ETFGVVVTPQHRCCIVDMLAKAGRVEEAYEFVQELGEEGDF 721

Query: 586 -AVWGALLGACVIHGNVELGEVAAKWLFELEPE--NPGNYVLLSKLYSAVRRWKDAENVR 642
            ++WG LL +C      EL  +  + L  +E +  + G  VLLS +++A   W  A+++R
Sbjct: 722 VSIWGTLLASCKAQDKQELVNLVTERLICIEKKYGHAGYSVLLSHIFAAEGNWSSADSLR 781

Query: 643 DVMDEKGLRKAPAHSLIEVRN 663
             M  +GL K    S I+V++
Sbjct: 782 KEMRLRGLSKMAGSSWIKVQH 802



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 156/524 (29%), Positives = 257/524 (49%), Gaps = 22/524 (4%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNP--DNYTYPIVIKACTDLAWRKLGIALHG 135
           YN ++  Y        +L+++  +       P  D+YTY   + AC      +LG ++H 
Sbjct: 101 YNALLIAYVARALPEHALRLYALLNHAARPTPRSDHYTYSCALTACARTRRLRLGKSVHA 160

Query: 136 RVLITGFDM-DTFV-GNCLIAMYMNF------GEVKAARKVFDAMWEHSVVSWNTLISGY 187
            +L     + DT V  N L+ +Y +       G V   R++FDAM + + VSWNTL   Y
Sbjct: 161 HLLRRARSLPDTAVLRNSLLNVYASCVRYRGDGSVDVVRRLFDAMPKRNAVSWNTLFGWY 220

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA--GGRLGK 245
            K    +EAL +F  ML+ G++P   S V+V PA    ++     +++ L+   G     
Sbjct: 221 VKTGRPQEALEMFVRMLEDGIKPTPVSFVNVFPAVAK-EDPSWSFVLYGLLVKHGMEYVN 279

Query: 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL-FQLM 304
           ++   ++ + M+ + G V  A  VF+  ++++   W +MI GY  NG    A+GL  +LM
Sbjct: 280 DLFVVSSAIVMFSELGDVQSAWRVFEYAAKKNTEVWNTMITGYVQNGKFAEAMGLVIRLM 339

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIK-QNLECEVIVETALIDMYAKCNL 363
             + V  + +T  S L+A S     + G+ LH + IK  +    VI+  AL+ MY++C  
Sbjct: 340 VSKEVPLDVVTFLSALTAASQSQDGRLGQQLHGYLIKGMHTTLPVILGNALVVMYSRCGN 399

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
           V+ +F++F R  +K  V WN ++   V N    + + L  QM       +  TL ++L A
Sbjct: 400 VQTAFELFDRLHEKDIVSWNTMITAFVQNDFDLEGLLLVYQMQKSGFAADLVTLTAVLSA 459

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
            +   DL      H YLIR+G +    + + LID+Y+K G +E A ++F +     +D V
Sbjct: 460 ASNTGDLHIGKQAHSYLIRHG-IEGEGLESYLIDMYAKSGRIEIAQRVFDDYGNAKRDEV 518

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH-GGLLDEGLDLFNF 542
            W+ +IAGY   GH E A+  F+ M+++ ++P  VT  S L AC   GG L  G  +  F
Sbjct: 519 TWNAMIAGYTQTGHPEQAILAFRAMIEACLEPTSVTLASVLPACDPLGGGLCAGKQIHCF 578

Query: 543 MLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPT 584
            L     C   + +  T +VD+  + G +  A  +   M  K T
Sbjct: 579 ALRR---CLDTNVFVGTALVDMYSKCGEISTAEHVFADMTEKST 619


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/488 (37%), Positives = 288/488 (59%), Gaps = 6/488 (1%)

Query: 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIH-ELVA 239
           N +I    +N+     +   + ML  G+EPD  ++  VL A   ++ I  G+ IH   + 
Sbjct: 79  NAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIK 138

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
            G +G N+   N L+ +Y  CGS+++ + VFD    RD+V+WT++I  +   G    A+ 
Sbjct: 139 TGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVE 198

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ--NLECEVIVETALIDM 357
            F  M    +R +  T+  +LSACS+L  L  G+ +H++ I+   +++ +V V  AL+DM
Sbjct: 199 AFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSY-IRHYIDMKADVFVGNALLDM 257

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y KC+ +  +++VF     K  V WNA+++G  + G  R+A++ FR M  + V+P++ TL
Sbjct: 258 YLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTL 317

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
             +L + A L  L+    +H Y+ R   L+   V   L+D+Y+KCGS++ A ++F  +  
Sbjct: 318 VGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESM-- 375

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
           K +D+  ++ +I G  +HG    A  +F EM + G++PNEVTF   L ACSHGGL+ EG 
Sbjct: 376 KRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGK 435

Query: 538 DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597
             F  M + ++   +A+HY C++DLLGRAG + EA ++I  M ++P     GALLGAC I
Sbjct: 436 KYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRI 495

Query: 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657
           HGNV++GE   + L EL+P+  G Y+L++ LYS+V RWKDA  +R  M  K +RK P  S
Sbjct: 496 HGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMRKTPGCS 555

Query: 658 LIEVRNIL 665
           LIEV  ++
Sbjct: 556 LIEVDGVV 563



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 139/506 (27%), Positives = 256/506 (50%), Gaps = 17/506 (3%)

Query: 25  ATKSIAGTKQLHAFIITSGPL-FTHLRSSLV------RAYGHVSNVRILFDEMSERSSF- 76
           + KSI+  KQ+H   I +  L   +L   L+       +   +  +R +    S  + F 
Sbjct: 15  SCKSISHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYIRSILLTHSHDAQFC 74

Query: 77  --LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134
             L N +++  ++N  +   ++    ML +G   PD +T P+V+KA   +   + G  +H
Sbjct: 75  LSLCNAIIRSISRNSINLSPMEFLNEMLVVG-LEPDGFTIPLVLKALALIQGIREGQQIH 133

Query: 135 GRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA 193
            R + TG    + +V N L+ +Y   G +   +KVFD      +VSW TLI  + K    
Sbjct: 134 ARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLY 193

Query: 194 KEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG-RLGKNIAAWNA 252
             A+  F  M    +  D  ++V VL AC  L ++ +G+ +H  +     +  ++   NA
Sbjct: 194 SRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNA 253

Query: 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312
           L+DMY+KC  +N A  VFD M  ++VVTW +MI+G A  G  R AL  F++MQ +GV+P+
Sbjct: 254 LLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPD 313

Query: 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFA 372
            +T+  +L++C++L  L+ G+ +HA+  + ++  +  V  AL+DMYAKC  +  +F+VF 
Sbjct: 314 EVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFE 373

Query: 373 RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432
              ++    + A++ G   +G A  A ++F +M    +EPN+ T   LL A +    + +
Sbjct: 374 SMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAE 433

Query: 433 AMNIHCYLI-RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
                  +  +Y      E    +ID+  + G ++ A +I  ++ I+  D+     ++  
Sbjct: 434 GKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIR-PDVFACGALLGA 492

Query: 492 YGMHGHGETAVSLFKEMVQSGVQPNE 517
             +HG+ +   S+ +++ +  + P+E
Sbjct: 493 CRIHGNVDIGESVMQKLTE--LDPDE 516



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 124/398 (31%), Positives = 202/398 (50%), Gaps = 16/398 (4%)

Query: 4   PSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG--PLFTHLRSSLVRAY---G 58
           P   T+P    LV+K +   A  + I   +Q+HA  I +G      ++ ++L+R Y   G
Sbjct: 108 PDGFTIP----LVLKAL---ALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCG 160

Query: 59  HVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVI 118
            + +V+ +FDE   R    + T+++ + + G    +++ F+ M  L     D  T  +V+
Sbjct: 161 SIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDL-RLRADGRTLVVVL 219

Query: 119 KACTDLAWRKLGIALHGRVL-ITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
            AC++L    LG  +H  +        D FVGN L+ MY+   ++ +A KVFD M   +V
Sbjct: 220 SACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNV 279

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V+WN +ISG       +EAL  F  M   GV+PD  ++V VL +C  L  +E+G+ +H  
Sbjct: 280 VTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAY 339

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           +    +  +    NAL+DMY KCGS++EA  VF+ M  RDV ++T+MI G AL+G+   A
Sbjct: 340 MRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWA 399

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRS-LHAWTIKQNLECEVIVETALID 356
             +F  M   G+ PN +T   LL ACS    +  G+      + K  L  +      +ID
Sbjct: 400 FQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMID 459

Query: 357 MYAKCNLVKLSFQVFARTSKKKTV-PWNAILAGCVHNG 393
           +  +  LVK + ++  +   +  V    A+L  C  +G
Sbjct: 460 LLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRIHG 497


>gi|356534091|ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic-like [Glycine max]
          Length = 903

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 190/588 (32%), Positives = 320/588 (54%), Gaps = 5/588 (0%)

Query: 78  YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK-LGIALHGR 136
           + T++    +     ++L++++ M+  G Y P+ +T+  ++   + L   K  G  LH +
Sbjct: 186 WTTMISSLVETSKWSEALQLYVKMIEAGIY-PNEFTFVKLLGMPSFLGLGKGYGKVLHSQ 244

Query: 137 VLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEA 196
           ++  G +M+  +   +I MY     ++ A KV     ++ V  W ++ISG+ +N+  +EA
Sbjct: 245 LITFGVEMNLMLKTAIICMYAKCRRMEDAIKVSQQTPKYDVCLWTSIISGFVQNSQVREA 304

Query: 197 LVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM 256
           +     M  SG+ P+  +  S+L A   +  +E+G   H  V    L  +I   NALVDM
Sbjct: 305 VNALVDMELSGILPNNFTYASLLNASSSVLSLELGEQFHSRVIMVGLEGDIYVGNALVDM 364

Query: 257 YVKCG-SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT 315
           Y+KC  +       F  ++  +V++WTS+I G+A +G    ++ LF  MQ  GV+PNS T
Sbjct: 365 YMKCSHTTTNGVKAFRGIALPNVISWTSLIAGFAEHGFEEESVQLFAEMQAAGVQPNSFT 424

Query: 316 IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS 375
           + ++L ACS +  + + + LH + IK  ++ ++ V  AL+D YA   +   ++ V    +
Sbjct: 425 LSTILGACSKMKSIIQTKKLHGYIIKTQVDIDMAVGNALVDAYAGGGMADEAWSVIGMMN 484

Query: 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435
            +  + +  + A     G    A+ +   M  + V+ ++ +L S + A A L  ++    
Sbjct: 485 HRDIITYTTLAARLNQQGDHEMALRVITHMCNDEVKMDEFSLASFISAAAGLGIMETGKQ 544

Query: 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH 495
           +HCY  + GF     VS  L+  YSKCGS+  A+++F +I   D+  V W+ +I+G   +
Sbjct: 545 LHCYSFKSGFERCNSVSNSLVHSYSKCGSMRDAYRVFKDITEPDR--VSWNGLISGLASN 602

Query: 496 GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555
           G    A+S F +M  +GV+P+ VTF S + ACS G LL++GLD F  M + +    + DH
Sbjct: 603 GLISDALSAFDDMRLAGVKPDSVTFLSLIFACSQGSLLNQGLDYFYSMEKTYHITPKLDH 662

Query: 556 YTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615
           Y C+VDLLGR GRL+EA  +I TMP KP   ++  LL AC +HGNV LGE  A+   EL+
Sbjct: 663 YVCLVDLLGRGGRLEEAMGVIETMPFKPDSVIYKTLLNACNLHGNVPLGEDMARRCLELD 722

Query: 616 PENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           P +P  Y+LL+ LY         +  R +M E+GLR++P    +EV++
Sbjct: 723 PCDPAIYLLLASLYDNAGLPDFGDKTRKLMRERGLRRSPRQCWMEVKS 770



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 148/454 (32%), Positives = 223/454 (49%), Gaps = 5/454 (1%)

Query: 128 KLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY 187
           K G  +H  ++  G   D ++ N L+ +Y     V  AR +FD M    VVSW TL+S +
Sbjct: 33  KEGACVHSPIIKVGLQHDLYLSNNLLCLYAKCFGVGQARHLFDEMPHRDVVSWTTLLSAH 92

Query: 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNI 247
            +N +  EAL +FD ML SG  P+  ++ S L +C  L E E G  IH  V    L  N 
Sbjct: 93  TRNKHHFEALQLFDMMLGSGQCPNEFTLSSALRSCSALGEFEFGAKIHASVVKLGLELNH 152

Query: 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307
                LVD+Y KC    E   +   + + DVV+WT+MI+          AL L+  M   
Sbjct: 153 VLGTTLVDLYTKCDCTVEPHKLLAFVKDGDVVSWTTMISSLVETSKWSEALQLYVKMIEA 212

Query: 308 GVRPNSLTIGSLLSACSSLYYLK-RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKL 366
           G+ PN  T   LL   S L   K  G+ LH+  I   +E  ++++TA+I MYAKC  ++ 
Sbjct: 213 GIYPNEFTFVKLLGMPSFLGLGKGYGKVLHSQLITFGVEMNLMLKTAIICMYAKCRRMED 272

Query: 367 SFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI 426
           + +V  +T K     W +I++G V N   R+AV     M +  + PN+ T  SLL A + 
Sbjct: 273 AIKVSQQTPKYDVCLWTSIISGFVQNSQVREAVNALVDMELSGILPNNFTYASLLNASSS 332

Query: 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG-SLESAHKIFSEIPIKDKDIVVW 485
           +  L+     H  +I  G    + V   L+D+Y KC  +  +  K F  I +   +++ W
Sbjct: 333 VLSLELGEQFHSRVIMVGLEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIAL--PNVISW 390

Query: 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
           + +IAG+  HG  E +V LF EM  +GVQPN  T ++ L ACS    + +   L  ++++
Sbjct: 391 TSLIAGFAEHGFEEESVQLFAEMQAAGVQPNSFTLSTILGACSKMKSIIQTKKLHGYIIK 450

Query: 546 NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
                  A     +VD     G  DEA+ +I  M
Sbjct: 451 TQVDIDMAVG-NALVDAYAGGGMADEAWSVIGMM 483



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 138/543 (25%), Positives = 266/543 (48%), Gaps = 9/543 (1%)

Query: 60  VSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIK 119
           V   R LFDEM  R    + T++  + +N    ++L++F  ML  G+  P+ +T    ++
Sbjct: 67  VGQARHLFDEMPHRDVVSWTTLLSAHTRNKHHFEALQLFDMMLGSGQC-PNEFTLSSALR 125

Query: 120 ACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVS 179
           +C+ L   + G  +H  V+  G +++  +G  L+ +Y          K+   + +  VVS
Sbjct: 126 SCSALGEFEFGAKIHASVVKLGLELNHVLGTTLVDLYTKCDCTVEPHKLLAFVKDGDVVS 185

Query: 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE-MGRMIHELV 238
           W T+IS   + +   EAL ++  M+++G+ P+  + V +L    +L   +  G+++H  +
Sbjct: 186 WTTMISSLVETSKWSEALQLYVKMIEAGIYPNEFTFVKLLGMPSFLGLGKGYGKVLHSQL 245

Query: 239 AGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNAL 298
               +  N+    A++ MY KC  + +A  V  +  + DV  WTS+I+G+  N  VR A+
Sbjct: 246 ITFGVEMNLMLKTAIICMYAKCRRMEDAIKVSQQTPKYDVCLWTSIISGFVQNSQVREAV 305

Query: 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMY 358
                M+  G+ PN+ T  SLL+A SS+  L+ G   H+  I   LE ++ V  AL+DMY
Sbjct: 306 NALVDMELSGILPNNFTYASLLNASSSVLSLELGEQFHSRVIMVGLEGDIYVGNALVDMY 365

Query: 359 AKCNLVKLS-FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
            KC+    +  + F   +    + W +++AG   +G   ++V+LF +M    V+PN  TL
Sbjct: 366 MKCSHTTTNGVKAFRGIALPNVISWTSLIAGFAEHGFEEESVQLFAEMQAAGVQPNSFTL 425

Query: 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPI 477
           +++L A + +  + Q   +H Y+I+      + V   L+D Y+  G  + A  +     +
Sbjct: 426 STILGACSKMKSIIQTKKLHGYIIKTQVDIDMAVGNALVDAYAGGGMADEAWSVIGM--M 483

Query: 478 KDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGL 537
             +DI+ ++ + A     G  E A+ +   M    V+ +E +  S + A +  G+++ G 
Sbjct: 484 NHRDIITYTTLAARLNQQGDHEMALRVITHMCNDEVKMDEFSLASFISAAAGLGIMETGK 543

Query: 538 DLFNFMLEN-HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596
            L  +  ++  + C+   +   +V    + G + +AY + + +  +P    W  L+    
Sbjct: 544 QLHCYSFKSGFERCNSVSN--SLVHSYSKCGSMRDAYRVFKDIT-EPDRVSWNGLISGLA 600

Query: 597 IHG 599
            +G
Sbjct: 601 SNG 603



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 162/317 (51%), Gaps = 6/317 (1%)

Query: 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM 273
           + + VL  C   + ++ G  +H  +    L  ++   N L+ +Y KC  V +AR +FD M
Sbjct: 19  TCLQVLSLCNS-QTLKEGACVHSPIIKVGLQHDLYLSNNLLCLYAKCFGVGQARHLFDEM 77

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR 333
             RDVV+WT++++ +  N     AL LF +M   G  PN  T+ S L +CS+L   + G 
Sbjct: 78  PHRDVVSWTTLLSAHTRNKHHFEALQLFDMMLGSGQCPNEFTLSSALRSCSALGEFEFGA 137

Query: 334 SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNG 393
            +HA  +K  LE   ++ T L+D+Y KC+      ++ A       V W  +++  V   
Sbjct: 138 KIHASVVKLGLELNHVLGTTLVDLYTKCDCTVEPHKLLAFVKDGDVVSWTTMISSLVETS 197

Query: 394 LARKAVELFRQMLVEVVEPNDATLNSLL--PAYAILADLQQAMNIHCYLIRYGFLSVVEV 451
              +A++L+ +M+   + PN+ T   LL  P++  L      + +H  LI +G    + +
Sbjct: 198 KWSEALQLYVKMIEAGIYPNEFTFVKLLGMPSFLGLGKGYGKV-LHSQLITFGVEMNLML 256

Query: 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQS 511
            T +I +Y+KC  +E A K+  + P    D+ +W+ II+G+  +     AV+   +M  S
Sbjct: 257 KTAIICMYAKCRRMEDAIKVSQQTP--KYDVCLWTSIISGFVQNSQVREAVNALVDMELS 314

Query: 512 GVQPNEVTFTSALHACS 528
           G+ PN  T+ S L+A S
Sbjct: 315 GILPNNFTYASLLNASS 331



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 124/274 (45%), Gaps = 7/274 (2%)

Query: 27  KSIAGTKQLHAFII-TSGPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVM 82
           KSI  TK+LH +II T   +   + ++LV AY   G       +   M+ R    Y T+ 
Sbjct: 436 KSIIQTKKLHGYIIKTQVDIDMAVGNALVDAYAGGGMADEAWSVIGMMNHRDIITYTTLA 495

Query: 83  KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF 142
               Q G    +L++   M    E   D ++    I A   L   + G  LH     +GF
Sbjct: 496 ARLNQQGDHEMALRVITHMCN-DEVKMDEFSLASFISAAAGLGIMETGKQLHCYSFKSGF 554

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
           +    V N L+  Y   G ++ A +VF  + E   VSWN LISG   N    +AL  FD 
Sbjct: 555 ERCNSVSNSLVHSYSKCGSMRDAYRVFKDITEPDRVSWNGLISGLASNGLISDALSAFDD 614

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
           M  +GV+PD  + +S++ AC     +  G    + +     +   +  +  LVD+  + G
Sbjct: 615 MRLAGVKPDSVTFLSLIFACSQGSLLNQGLDYFYSMEKTYHITPKLDHYVCLVDLLGRGG 674

Query: 262 SVNEARLVFDRMS-ERDVVTWTSMINGYALNGDV 294
            + EA  V + M  + D V + +++N   L+G+V
Sbjct: 675 RLEEAMGVIETMPFKPDSVIYKTLLNACNLHGNV 708


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 194/532 (36%), Positives = 286/532 (53%), Gaps = 8/532 (1%)

Query: 133 LHGRVLITGFDMDTFVGNCLIAMY-MNFGEVKAARKVFDAMWEH-SVVSWNTLISGYFKN 190
           +H  ++ +G   D FV + +   +  + G V  A    +    H   + +NTLI+ Y  +
Sbjct: 24  IHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLHVGTLPYNTLIAAYASS 83

Query: 191 AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAW 250
              K A +V+  ++ +G  PD  +   VL AC     ++ G  +H +        ++   
Sbjct: 84  CTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQ 143

Query: 251 NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310
           N+L+  Y  CG    A  VFD M  RDVV+WT +I+GY   G    A+ LF  M    V 
Sbjct: 144 NSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMD---VV 200

Query: 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370
           PN  T  S+L AC  + YL  G+ +H    K+     ++V  AL+DMY KC  +  + ++
Sbjct: 201 PNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKL 260

Query: 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADL 430
           F     +  V W +I++G V     + ++ELF  M +  VEP+   L S+L A A L  L
Sbjct: 261 FDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGAL 320

Query: 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490
                +  Y+ R G    + + T L+D+Y+KCG +E A  IF+ IP  +++I  W+ ++ 
Sbjct: 321 DYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIP--NRNIFTWNALLG 378

Query: 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550
           G  MHGHG  A+  F+ M+ +G++PNEVTF + L AC H GL+ EG   F  M+      
Sbjct: 379 GLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNF 438

Query: 551 S-RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609
           S R +HY C++DLL RAG LDEAY  IR MPL P   +WGALL AC  +GNVEL +    
Sbjct: 439 SPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVELSQEILS 498

Query: 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
            L EL+ ++ G YVLLS +Y+   RW D   VR +M +KG+RK P  S+IEV
Sbjct: 499 HLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSVIEV 550



 Score =  268 bits (684), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 163/512 (31%), Positives = 270/512 (52%), Gaps = 13/512 (2%)

Query: 15  LVIKLVQQYAATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY--GHVSNVRILFDEMSE 72
           L ++L+      K+I   KQ+HA +I SG L      S V  +   H+  V   FD +++
Sbjct: 4   LKLRLLNSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYAFDFLNQ 63

Query: 73  RS----SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128
                 +  YNT++  YA +     +  ++ G +    + PD YT+P+V+KACT     +
Sbjct: 64  TDLHVGTLPYNTLIAAYASSCTPKAAFLVY-GRIVGNGFVPDMYTFPVVLKACTKFLGVQ 122

Query: 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYF 188
            G  +HG  +  GF  D +V N L+  Y   G+   A +VFD M    VVSW  LISGY 
Sbjct: 123 EGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYV 182

Query: 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248
           +     EA+ +F   LK  V P+ A+ VSVL ACG +  + MG+ +H LV     G  + 
Sbjct: 183 RTGLFDEAINLF---LKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLV 239

Query: 249 AWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG 308
             NALVDMYVKC  + EAR +FD + +RD+V+WTS+I+G       +++L LF  MQ  G
Sbjct: 240 VGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISG 299

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           V P+ + + S+LSAC+SL  L  GR +  +  +Q +E ++ + TAL+DMYAKC  ++++ 
Sbjct: 300 VEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMAL 359

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428
            +F     +    WNA+L G   +G   +A++ F  M+   + PN+ T  ++L A     
Sbjct: 360 HIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSG 419

Query: 429 DLQQAMNIHCYLIR--YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
            + +  +    +I   + F   +E    +ID+  + G L+ A+K    +P+   D+++W 
Sbjct: 420 LVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLP-PDVLIWG 478

Query: 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518
            +++    +G+ E +  +   +++   Q + V
Sbjct: 479 ALLSACKANGNVELSQEILSHLLELKSQDSGV 510


>gi|357162206|ref|XP_003579338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g20730-like [Brachypodium distachyon]
          Length = 558

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 190/562 (33%), Positives = 310/562 (55%), Gaps = 5/562 (0%)

Query: 99  LGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMN 158
           +G++R    + D   Y  ++++C     R  G ++H +++ +    D  +   L+  Y  
Sbjct: 1   MGLVRGAATSADPAFYYSLLQSCMSCFRR--GRSVHHQIIASAAPPDLHMSTKLVIFYAK 58

Query: 159 FGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSV 218
            G+V AARKVFD M   SVVSW  ++SGY +N   +EAL +F  ML SGV P+  +  SV
Sbjct: 59  HGDVAAARKVFDGMPHRSVVSWTAMVSGYSRNGQTREALDLFTLMLASGVRPNQFTYGSV 118

Query: 219 LPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDV 278
             AC     +  G  +H  VA GR   ++   +AL+DM+++CGSV +A  +F  M  +DV
Sbjct: 119 ASACAGAGCVRSGEQVHACVAKGRFVGDVFVQSALMDMHLRCGSVVDAMQLFAEMERKDV 178

Query: 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAW 338
           V W +++ G        +ALGL   M    + P+  T GS L AC ++  L     +H  
Sbjct: 179 VAWNALLRGLVERAQYGDALGLLPSMLRGAMLPDHFTFGSALKACGAVSVLANVELIHTC 238

Query: 339 TIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAG-CVHNGLARK 397
            IK     E +V  ++ID YAKC  +  +  ++    +   V   A+++G  +    +  
Sbjct: 239 IIKLGYWGEKVVIGSIIDAYAKCRGLSSARLIYDSICEPDLVSSTALISGYSMDRNHSED 298

Query: 398 AVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457
           A+ELF ++  + +  +   L+SLL   A +A L+    IH Y+ +   ++ V +   ++D
Sbjct: 299 AMELFCKIHRKGLRIDGVLLSSLLGLCANVASLRFGTQIHAYMCKRQPMTDVALDNAVVD 358

Query: 458 IYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517
           +Y+K G    A + F E+P ++  +V W+ +I   G +G GE AVSLF  MV+ GV+PN+
Sbjct: 359 MYAKAGEFADARRAFDEMPYRN--VVSWTSLITACGKNGFGEDAVSLFDRMVEDGVKPND 416

Query: 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIR 577
           VTF S L AC H GL  +G++ F  M+  +    RA+HY+  +DLL R G+L +A+ L++
Sbjct: 417 VTFLSLLSACGHSGLTSKGMEYFTSMMSKYGIDPRAEHYSSAIDLLARGGQLKDAWKLVQ 476

Query: 578 TMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKD 637
            + ++P  +++GA+LGAC  HG++ LGE AAK LF + PE+  +Y +L+ +Y+    W+D
Sbjct: 477 NIDIEPNSSMFGAMLGACKTHGSMPLGETAAKNLFTIAPESSVHYAVLANMYAESSLWED 536

Query: 638 AENVRDVMDEKGLRKAPAHSLI 659
           A+  R +M E    K    S+I
Sbjct: 537 AQRTRKLMAETSGGKVAGCSVI 558



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 143/489 (29%), Positives = 248/489 (50%), Gaps = 13/489 (2%)

Query: 36  HAFIITSGPLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASH 92
           H  I ++ P   H+ + LV  Y   G V+  R +FD M  RS   +  ++  Y++NG + 
Sbjct: 35  HQIIASAAPPDLHMSTKLVIFYAKHGDVAAARKVFDGMPHRSVVSWTAMVSGYSRNGQTR 94

Query: 93  DSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCL 152
           ++L +F  ML  G   P+ +TY  V  AC      + G  +H  V    F  D FV + L
Sbjct: 95  EALDLFTLMLASG-VRPNQFTYGSVASACAGAGCVRSGEQVHACVAKGRFVGDVFVQSAL 153

Query: 153 IAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDC 212
           + M++  G V  A ++F  M    VV+WN L+ G  + A   +AL +   ML+  + PD 
Sbjct: 154 MDMHLRCGSVVDAMQLFAEMERKDVVAWNALLRGLVERAQYGDALGLLPSMLRGAMLPDH 213

Query: 213 ASVVSVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFD 271
            +  S L ACG +  +    +IH  ++  G  G+ +    +++D Y KC  ++ ARL++D
Sbjct: 214 FTFGSALKACGAVSVLANVELIHTCIIKLGYWGEKVVI-GSIIDAYAKCRGLSSARLIYD 272

Query: 272 RMSERDVVTWTSMINGYALNGD-VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLK 330
            + E D+V+ T++I+GY+++ +   +A+ LF  +  +G+R + + + SLL  C+++  L+
Sbjct: 273 SICEPDLVSSTALISGYSMDRNHSEDAMELFCKIHRKGLRIDGVLLSSLLGLCANVASLR 332

Query: 331 RGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
            G  +HA+  K+    +V ++ A++DMYAK      + + F     +  V W +++  C 
Sbjct: 333 FGTQIHAYMCKRQPMTDVALDNAVVDMYAKAGEFADARRAFDEMPYRNVVSWTSLITACG 392

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI-RYGFLSVV 449
            NG    AV LF +M+ + V+PND T  SLL A        + M     ++ +YG     
Sbjct: 393 KNGFGEDAVSLFDRMVEDGVKPNDVTFLSLLSACGHSGLTSKGMEYFTSMMSKYGIDPRA 452

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGH---GETAV-SLF 505
           E  +  ID+ ++ G L+ A K+   I I + +  ++  ++     HG    GETA  +LF
Sbjct: 453 EHYSSAIDLLARGGQLKDAWKLVQNIDI-EPNSSMFGAMLGACKTHGSMPLGETAAKNLF 511

Query: 506 KEMVQSGVQ 514
               +S V 
Sbjct: 512 TIAPESSVH 520


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 203/624 (32%), Positives = 334/624 (53%), Gaps = 47/624 (7%)

Query: 47  THLRSSLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGE 106
           TH+R+      GH  +   +F+ M  RSS  YN ++  Y +N   + +  +F  M     
Sbjct: 58  THMRN------GHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMPE--- 108

Query: 107 YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR 166
              D +++ +++        R   +    R+     + D    N L++ Y   G V  AR
Sbjct: 109 --RDLFSWNVMLTGYV----RNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAR 162

Query: 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF----DWMLKSGVEPDCASVVSVLPAC 222
           +VFD M E + +SWN L++ Y  N   +EA ++F    DW L   +  +C          
Sbjct: 163 EVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDL---ISWNCL-------MG 212

Query: 223 GYLKEIEMG--RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT 280
           G++++ ++G  R + + +      ++  +WN ++  Y + G +++AR +FD    RDV T
Sbjct: 213 GFVRKKKLGDARWLFDKMPV----RDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFT 268

Query: 281 WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI 340
           WT+M++GY  NG +  A   F  M       N ++  ++++      Y++  +   A  +
Sbjct: 269 WTAMVSGYVQNGMLDEAKTFFDEMP----EKNEVSYNAMIAG-----YVQTKKMDIAREL 319

Query: 341 KQNLECEVIVE-TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAV 399
            +++ C  I     +I  Y +   +  + + F    ++  V W AI+AG   +G   +A+
Sbjct: 320 FESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEAL 379

Query: 400 ELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459
            +F ++  +    N AT    L   A +A L+    IH   ++ G+ +   V   L+ +Y
Sbjct: 380 NMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMY 439

Query: 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519
            KCGS++ A+  F    I++KD+V W+ ++AGY  HG G  A+++F+ M  +GV+P+E+T
Sbjct: 440 FKCGSIDEANDTFE--GIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEIT 497

Query: 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579
               L ACSH GLLD G + F  M +++     + HYTC++DLLGRAGRL+EA DLIR M
Sbjct: 498 MVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNM 557

Query: 580 PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAE 639
           P +P  A WGALLGA  IHGN ELGE AA+ +F++EP+N G YVLLS LY+A  RW DA+
Sbjct: 558 PFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDAD 617

Query: 640 NVRDVMDEKGLRKAPAHSLIEVRN 663
            +R  M + G++K P +S +EV+N
Sbjct: 618 KMRSKMRDIGVQKVPGYSWVEVQN 641



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 125/466 (26%), Positives = 205/466 (43%), Gaps = 46/466 (9%)

Query: 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDW 202
           D D    N  I+ +M  G   +A  VF+ M   S VS+N +ISGY +N+    A  +FD 
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 203 MLKSGVEPDCASVVSVLPACGYLKEIEMG--RMIHELVAGGRLGKNIAAWNALVDMYVKC 260
           M     E D  S   +L   GY++   +G  R + +L+      K++ +WN+L+  Y + 
Sbjct: 106 M----PERDLFSWNVML--TGYVRNCRLGDARRLFDLMP----EKDVVSWNSLLSGYAQN 155

Query: 261 GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM-QFEGVRPNSLTIGSL 319
           G V+EAR VFD M E++ ++W  ++  Y  NG +  A  LF+    ++ +  N L  G  
Sbjct: 156 GYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGG-- 213

Query: 320 LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
                  +  K+      W   +    + I    +I  YA+   +  + ++F  +  +  
Sbjct: 214 -------FVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDV 266

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
             W A+++G V NG+  +A   F +M     E N+ + N+++  Y       + M+I   
Sbjct: 267 FTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIAGYV----QTKKMDIARE 318

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           L        +     +I  Y + G +  A K F  +P   +D V W+ IIAGY   GH E
Sbjct: 319 LFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMP--QRDCVSWAAIIAGYAQSGHYE 376

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT-C 558
            A+++F E+ Q G   N  TF  AL  C+    L+ G  +       H    +  + T C
Sbjct: 377 EALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQI-------HGQAVKMGYGTGC 429

Query: 559 IVD-----LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHG 599
            V      +  + G +DEA D    +  K     W  +L     HG
Sbjct: 430 FVGNALLAMYFKCGSIDEANDTFEGIEEKDV-VSWNTMLAGYARHG 474



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 155/348 (44%), Gaps = 36/348 (10%)

Query: 272 RMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKR 331
           R+ + D++ W   I+ +  NG   +AL +F  M     R +S++  +++S      YL+ 
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMP----RRSSVSYNAMISG-----YLRN 93

Query: 332 GR-SLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390
            + +L      Q  E ++     ++  Y +   +  + ++F    +K  V WN++L+G  
Sbjct: 94  SKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYA 153

Query: 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVE 450
            NG   +A E+F  M     E N  + N LL AY     +++A    C L        + 
Sbjct: 154 QNGYVDEAREVFDNM----PEKNSISWNGLLAAYVHNGRIEEA----CLLFESKSDWDLI 205

Query: 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510
               L+  + +   L  A  +F ++P++D   + W+ +I+GY   G    A  LF E   
Sbjct: 206 SWNCLMGGFVRKKKLGDARWLFDKMPVRDA--ISWNTMISGYAQGGGLSQARRLFDESPT 263

Query: 511 SGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570
             V     T+T+ +      G+LDE    F+ M E ++       Y  ++    +  ++D
Sbjct: 264 RDV----FTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS-----YNAMIAGYVQTKKMD 314

Query: 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVA-AKWLFELEPE 617
            A +L  +MP +   + W  +     I G  ++G++A A+  F++ P+
Sbjct: 315 IARELFESMPCRNISS-WNTM-----ITGYGQIGDIAQARKFFDMMPQ 356



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 68/133 (51%), Gaps = 38/133 (28%)

Query: 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA 590
           GLLD G + F  M E +     + HYTC++DLLGR  RL+E                 GA
Sbjct: 778 GLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE-----------------GA 820

Query: 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650
           LLGA  IHGN ELGE AA+  F++ P+N G    +SK+             RDV    G+
Sbjct: 821 LLGASRIHGNTELGEKAAQMFFKMGPQNSG----ISKM-------------RDV----GV 859

Query: 651 RKAPAHSLIEVRN 663
           +K P +S  EV+N
Sbjct: 860 QKVPGYSWFEVQN 872


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/525 (34%), Positives = 290/525 (55%), Gaps = 13/525 (2%)

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           + +V   L+ MY   G V  AR+VFD M + +  SW+T+++GY     ++EA  +F  ML
Sbjct: 46  NVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLML 105

Query: 205 KSGVEPDCASVVSVLPACGYLKEIE------MGRMIHELVAGGRLGKNIAAWNALVDMYV 258
           +     +C S  S   A   L  +       MG  +H L+    L   ++  N+LV MY 
Sbjct: 106 E-----ECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYA 160

Query: 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGS 318
           K G +  A  VF+   ER+ +TW++MI GYA NG+  +A+ +F  M   G  P   T   
Sbjct: 161 KAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVG 220

Query: 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK 378
           +L+A S L  L  G+  H   +K   E ++ V++AL+DMYAKC  +  + + F +  +  
Sbjct: 221 VLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVD 280

Query: 379 TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHC 438
            V W A+++G V NG   +A+ L+ +M  E + P+ +T+ S L A A +A L+    +H 
Sbjct: 281 IVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHT 340

Query: 439 YLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
            +++YG      V + L  +YSKCG+LE    +F  IP  D+D++ W+ II+G+  +G G
Sbjct: 341 QIVKYGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIP--DRDVIAWNSIISGFSQNGCG 398

Query: 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC 558
             A+ LF+EM   G  P+ +TF + L ACSH GL+D G + F+ M +++    R DHY C
Sbjct: 399 NGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYAC 458

Query: 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618
           +VD+L RAG L EA D I ++ +     +W  +LGAC    + ++G  A + L EL   +
Sbjct: 459 MVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGD 518

Query: 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
              Y+LLS +Y++ R+W D E VR +M  +G+ K P  S +E+ +
Sbjct: 519 SSAYILLSNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWVELNS 563



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 134/444 (30%), Positives = 226/444 (50%), Gaps = 5/444 (1%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           +SL+  Y   G VS+ R +FD M +R+SF ++T++  YA    S ++  +F  ML     
Sbjct: 51  TSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPS 110

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARK 167
               +    V+ A +      +G  +HG ++  G      V N L+ MY   G + AA  
Sbjct: 111 EKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFH 170

Query: 168 VFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE 227
           VF++  E + ++W+ +I+GY +N  A  A+ +F  M  +G  P   + V VL A   L  
Sbjct: 171 VFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGA 230

Query: 228 IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           + +G+  H L+        I   +ALVDMY KCG + +A+  FD++ E D+V WT+M++G
Sbjct: 231 LAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSG 290

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347
           +  NG+   AL L+  M  EG+ P+  TI S L AC+ +  L+ G+ LH   +K  L   
Sbjct: 291 HVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYGLGLG 350

Query: 348 VIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
             V +AL  MY+KC  ++    VF R   +  + WN+I++G   NG    A++LF +M +
Sbjct: 351 APVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKM 410

Query: 408 EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLE 466
           E   P++ T  ++L A + +  + +       + + YG    ++    ++DI S+ G L+
Sbjct: 411 EGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLK 470

Query: 467 SAHKIFSEIPIKDKDIVVWSVIIA 490
            A      I I D    +W +++ 
Sbjct: 471 EAKDFIESITI-DHGTCLWRIVLG 493


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 216/574 (37%), Positives = 308/574 (53%), Gaps = 19/574 (3%)

Query: 105 GEYNPDNYTYPIVIKACTDL----AWRKLGIALHGRVLITGF--DMDTFVGNCLIAMYMN 158
           G +   ++T   V++A + L    A  +LG   H   L  G       F  N L++MY  
Sbjct: 4   GGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYAR 63

Query: 159 FGEVKAARKVFDAM--WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVV 216
            G V  A+++F         VV+WNT++S   ++    EA+     M+  GV PD  +  
Sbjct: 64  LGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFA 123

Query: 217 SVLPACGYLKEIEMGRMIHE-LVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM-- 273
           S LPAC  L+ +++GR +H  ++    L  N    +ALVDMY     V +AR VFD +  
Sbjct: 124 SALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPD 183

Query: 274 SERDVVTWTSMINGYALNGDVRNALGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRG 332
           S + +  W +MI GYA  G    AL LF  M+ E G  P   T+ S+L AC+        
Sbjct: 184 SGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGK 243

Query: 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHN 392
            ++H + +K+ +     V+ AL+DMYA+     ++ ++FA       V WN ++ GCV  
Sbjct: 244 EAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQ 303

Query: 393 GLARKAVELFRQM--LVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449
           G    A +L R+M  L E  V PN  TL +LLP  AILA   +   IH Y +R+   + V
Sbjct: 304 GHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDV 363

Query: 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509
            V + L+D+Y+KCG L  +  +F  +P   ++ + W+V+I  YGMHG G  A  LF  M 
Sbjct: 364 AVGSALVDMYAKCGCLALSRAVFDRLP--RRNTITWNVLIMAYGMHGLGGEATVLFDRMT 421

Query: 510 QSG-VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGR 568
            SG  +PNEVTF +AL ACSH G++D GL LF+ M  +H      D   C+VD+LGRAGR
Sbjct: 422 ASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGR 481

Query: 569 LDEAYDLIRTMPLKPTH-AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627
           LDEAY ++ +M       + W  +LGAC +H NV LGE+A + L ELEPE   +YVLL  
Sbjct: 482 LDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCN 541

Query: 628 LYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEV 661
           +YSA  +W  A  VR  M  +G+ K P  S IEV
Sbjct: 542 IYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWIEV 575



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 137/489 (28%), Positives = 244/489 (49%), Gaps = 18/489 (3%)

Query: 24  AATKSIAGTKQLHAFIITSGPLFTHLR---SSLVRAY---GHVSNVRILFDEMSERSS-- 75
           AA  ++   ++ HAF + +G L  H R   ++L+  Y   G V++ + LF   +      
Sbjct: 25  AAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDV 84

Query: 76  FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHG 135
             +NT++ +  Q+G   ++++    M+ LG   PD  T+   + AC+ L    +G  +H 
Sbjct: 85  VTWNTMVSVLVQSGMFDEAVQTLYDMVALG-VRPDGVTFASALPACSRLELLDVGREMHA 143

Query: 136 RVLITG-FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE--HSVVSWNTLISGYFKNAY 192
            V+       ++FV + L+ MY    +V  AR+VFD + +    +  WN +I GY +   
Sbjct: 144 YVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGM 203

Query: 193 AKEALVVFDWM-LKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWN 251
            +EAL +F  M  ++G  P   ++ SVLPAC   +       +H  V    +  N    N
Sbjct: 204 DEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQN 263

Query: 252 ALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF---EG 308
           AL+DMY + G  + AR +F  +   DVV+W ++I G  + G V +A  L + MQ     G
Sbjct: 264 ALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGG 323

Query: 309 VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368
           V PN++T+ +LL  C+ L    RG+ +H + ++  L+ +V V +AL+DMYAKC  + LS 
Sbjct: 324 VVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSR 383

Query: 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE-VVEPNDATLNSLLPAYAIL 427
            VF R  ++ T+ WN ++     +GL  +A  LF +M       PN+ T  + L A +  
Sbjct: 384 AVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHS 443

Query: 428 ADLQQAMNI-HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWS 486
             + + + + H     +G     ++   ++DI  + G L+ A+ + + +   ++ +  WS
Sbjct: 444 GMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWS 503

Query: 487 VIIAGYGMH 495
            ++    +H
Sbjct: 504 TMLGACRLH 512



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 128/281 (45%), Gaps = 10/281 (3%)

Query: 24  AATKSIAGTKQLHAFIITSGPLFTH-LRSSLVRAY---GHVSNVRILFDEMSERSSFLYN 79
           A +++ AG + +H +++  G      ++++L+  Y   G     R +F  +       +N
Sbjct: 235 ARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWN 294

Query: 80  TVMKMYAQNGASHDSLKMFLGMLRLGEYN--PDNYTYPIVIKACTDLAWRKLGIALHGRV 137
           T++      G   D+ ++   M +L E    P+  T   ++  C  LA    G  +HG  
Sbjct: 295 TLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYA 354

Query: 138 LITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEAL 197
           +    D D  VG+ L+ MY   G +  +R VFD +   + ++WN LI  Y  +    EA 
Sbjct: 355 VRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEAT 414

Query: 198 VVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMG-RMIHELVAGGRLGKNIAAWNALVD 255
           V+FD M  SG   P+  + ++ L AC +   ++ G ++ H +     +         +VD
Sbjct: 415 VLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVD 474

Query: 256 MYVKCGSVNEARLVFDRM--SERDVVTWTSMINGYALNGDV 294
           +  + G ++EA  +   M   E+ V  W++M+    L+ +V
Sbjct: 475 ILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHRNV 515


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 195/583 (33%), Positives = 314/583 (53%), Gaps = 42/583 (7%)

Query: 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAM--YMNFGEVKAARKVFDAMW 173
           +++++C+ +   K    +   +  TG     F  + L+A     + G++  A  +FD   
Sbjct: 57  LILQSCSSMFQLK---QIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFDQTE 113

Query: 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRM 233
             +   WNT+I GY K  +       F  M+++  E D  S V  L ACG   E  +G  
Sbjct: 114 LPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALKACGQFAEKIVGMA 173

Query: 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGD 293
           +H ++       ++   N L+  YV+ G +  AR +FD  S +DVVTWT+MINGYA N  
Sbjct: 174 VHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNW 233

Query: 294 VRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETA 353
           +  A+ LF  M    V+PN +T+ +LLSACS     + G++LH    ++++ C + +  A
Sbjct: 234 LDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNA 293

Query: 354 LIDMYAKCNLVKLSFQVFARTSKKKT-------------------------------VPW 382
           ++DMY KC  +  + ++F    ++                                 V W
Sbjct: 294 MLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSW 353

Query: 383 NAILAGCVHNGLARKAVELFRQMLVEVVE--PNDATLNSLLPAYAILADLQQAMNIHC-Y 439
           NA++AG   N    +A+ELF  M V+VV   P + TL  +L A   L  L+    IHC +
Sbjct: 354 NAMIAGYSQNSQPMEALELFHNM-VDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNH 412

Query: 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGE 499
           + + G    + +   ++D+Y+KCGS+++A K+F  +P  +K++V W+ +I+ Y  +GH +
Sbjct: 413 VNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMP--EKNLVSWNSMISAYASYGHAK 470

Query: 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559
            A++LF +M+ SG++P+ +TF   L ACS+GG + EG   F  M        + +HY C+
Sbjct: 471 KALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKREHYACM 530

Query: 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENP 619
           VDLL R G L EAY+LI  MP++ +   WGALL AC  HGNVE+ ++A + L EL+PE+ 
Sbjct: 531 VDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMAKLAGEKLLELDPEDS 590

Query: 620 GNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVR 662
           G Y LL+ + +  ++WKD   VR +M E+G++K P HSLIE+ 
Sbjct: 591 GIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEIE 633



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 153/521 (29%), Positives = 266/521 (51%), Gaps = 50/521 (9%)

Query: 25  ATKSIAGTKQLHAFIITSGPLFTHLRSSLVRAY------GHVSNVRILFDEMSERSSFLY 78
           +  S+   KQ+ A I  +G +     +S + A+      G +    ++FD+    + F +
Sbjct: 61  SCSSMFQLKQIQAHITCTGLMNQIFPASRLLAFCALSDSGDIHYAHLIFDQTELPNCFFW 120

Query: 79  NTVMKMYAQNGASHDSL--KMFLGMLR-LGEYNPDNYTYPIVIKACTDLAWRKLGIALHG 135
           NT++K Y +  A+H S+    F  M+R   E+  D+ ++   +KAC   A + +G+A+H 
Sbjct: 121 NTMIKGYCK--ANHPSMGFSFFRQMIRNRAEF--DSGSFVFALKACGQFAEKIVGMAVHS 176

Query: 136 RVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195
            +   GFD D FV N LI  Y+  G +  AR++FD      VV+W T+I+GY +N +  E
Sbjct: 177 VIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDE 236

Query: 196 ALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVD 255
           A+ +F+ ML S V+P+  +++++L AC    + EMG+ +HE +    +  ++   NA++D
Sbjct: 237 AIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKDITCSLNLLNAMLD 296

Query: 256 MYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM----------- 304
           MYVKCG +  AR +F+ M  RDV +WTS++NGYA NGD+ +A  LF  M           
Sbjct: 297 MYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAM 356

Query: 305 ---------------------QFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTI-KQ 342
                                   G+ P   T+  +LSA   L  L+ G+ +H   + K 
Sbjct: 357 IAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKI 416

Query: 343 NLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402
            ++  +I++ A++DMYAKC  +  + ++F    +K  V WN++++     G A+KA+ LF
Sbjct: 417 GIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTLF 476

Query: 403 RQMLVEVVEPNDATLNSLLPA--YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460
            QM+   ++P+  T   +L A  Y       QA +       +G     E    ++D+ S
Sbjct: 477 DQMIGSGLKPDHITFIGVLSACSYGGFVSEGQA-HFESMENCFGVEPKREHYACMVDLLS 535

Query: 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETA 501
           + G L+ A+++ S +P++  +   W  ++     HG+ E A
Sbjct: 536 RVGLLKEAYELISRMPMEASE-GGWGALLDACRKHGNVEMA 575


>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Brachypodium distachyon]
          Length = 734

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 184/520 (35%), Positives = 289/520 (55%), Gaps = 3/520 (0%)

Query: 145 DTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204
           + FV   L+ MY   G +  A+ VFD M   + VSW  +++GY     ++EA  +F  ML
Sbjct: 152 NVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQML 211

Query: 205 -KSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263
            +  +  +     +VL A      + MG  +H LV    +   ++  N+LV MY K G +
Sbjct: 212 GECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCM 271

Query: 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323
           + A  VF+   ER+ +TW++MI GY+ NG+  +A+ +F  M   G  P   T+  +L+AC
Sbjct: 272 DAAFHVFESSKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNAC 331

Query: 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWN 383
           S +  L  G+  H   +K   E +V V++AL+DMYAKC  +  + + F + S+   V W 
Sbjct: 332 SDVGTLMEGKQAHGLMVKLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWT 391

Query: 384 AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY 443
           A++ G V NG   +A+ L+ +M  E V PN  T+ SLL A A LA L+    +H  ++++
Sbjct: 392 AMVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKF 451

Query: 444 GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
           GF     V + L  +YSKCG+LE    +F  +P   +D++ W+ II+G+  +G G  A++
Sbjct: 452 GFGLGASVGSALSTMYSKCGNLEDGMVVFRRMP--HRDVIAWNSIISGFSQNGRGNDAIN 509

Query: 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563
           LF+EM   G  P+ VTF + L ACSH GL+D G   F  M++++    R DHY C+VD+L
Sbjct: 510 LFEEMKLEGTAPDPVTFINVLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDHYACMVDIL 569

Query: 564 GRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623
            RAG L EA D I ++ +     +W  +LGAC    + ++G  A + L +L   +   Y+
Sbjct: 570 SRAGMLSEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGEKLMDLGTGDSAAYI 629

Query: 624 LLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRN 663
           LLS +Y+A R+W D E VR +M   G+ K P  S +E+ +
Sbjct: 630 LLSNIYAAQRKWNDVERVRYLMKLVGVSKDPGCSWVELNS 669



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/436 (30%), Positives = 226/436 (51%), Gaps = 6/436 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G + + +++FDEM  R+   +  ++  YA    S ++ ++F  ML     + + +    V
Sbjct: 167 GLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKCSQEAFELFRQMLGECPLHKNEFVATAV 226

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           + A +      +G+ +HG V+  G      V N L+ MY   G + AA  VF++  E + 
Sbjct: 227 LSAISVPLGLPMGVQVHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFHVFESSKERNS 286

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           ++W+ +I+GY +N  A+ A+ +F  M  +G  P   ++V VL AC  +  +  G+  H L
Sbjct: 287 ITWSAMITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGL 346

Query: 238 VAGGRLGKNIAAW--NALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVR 295
           +   +LG  +  +  +ALVDMY KCG + +A+  F++ SE D+V WT+M+ G+  NG+  
Sbjct: 347 MV--KLGFEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGHVQNGEFE 404

Query: 296 NALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
            AL L+  M  EGV PN+LTI SLL AC+ L  L+ G+ LH   +K        V +AL 
Sbjct: 405 QALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFGFGLGASVGSALS 464

Query: 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415
            MY+KC  ++    VF R   +  + WN+I++G   NG    A+ LF +M +E   P+  
Sbjct: 465 TMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINLFEEMKLEGTAPDPV 524

Query: 416 TLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
           T  ++L A + +  + +       +I+ YG    ++    ++DI S+ G L  A      
Sbjct: 525 TFINVLCACSHMGLVDRGWTYFRSMIKDYGLTPRLDHYACMVDILSRAGMLSEAKDFIES 584

Query: 475 IPIKDKDIVVWSVIIA 490
           I I D    +W +++ 
Sbjct: 585 ITI-DHGTCLWRIVLG 599



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 136/272 (50%), Gaps = 4/272 (1%)

Query: 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335
           RDV +W S++N  + +  +        ++    + P+  +  +  +A +  +    G  +
Sbjct: 80  RDVASWNSLLNPLSHHRPLAALSHFRSMLSSSTILPSPHSFAAAFTAAARAHSASAGAVV 139

Query: 336 HAWTIK-QNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL 394
           HA   K  +    V V TAL++MY K  L+  +  VF     +  V W A++AG      
Sbjct: 140 HALACKLPSASSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNEVSWAAMVAGYAARKC 199

Query: 395 ARKAVELFRQMLVEV-VEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST 453
           +++A ELFRQML E  +  N+    ++L A ++   L   + +H  +++ G +  V V  
Sbjct: 200 SQEAFELFRQMLGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGFVSVEN 259

Query: 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513
            L+ +Y+K G +++A  +F     K+++ + WS +I GY  +G+ E+AV +F +M  +G 
Sbjct: 260 SLVTMYAKAGCMDAAFHVFES--SKERNSITWSAMITGYSQNGNAESAVRMFSQMHAAGF 317

Query: 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545
            P E T    L+ACS  G L EG      M++
Sbjct: 318 PPTEFTLVGVLNACSDVGTLMEGKQAHGLMVK 349



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 126/291 (43%), Gaps = 34/291 (11%)

Query: 330 KRGRSLHAWTIKQNLECEVIVETALIDMYAKCN--LVKLSFQVFAR--TSKKKTVPWNAI 385
           + G +LHAW +K        V  +LI  Y+      +  +F VFA    + +    WN++
Sbjct: 29  RDGEALHAWALKSGSSSHAPVSNSLITFYSSFPRLFLPAAFAVFADIPAAARDVASWNSL 88

Query: 386 LAGCVHNGLARKAVELFRQML-VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444
           L    H+     A+  FR ML    + P+  +  +   A A          +H    +  
Sbjct: 89  LNPLSHH-RPLAALSHFRSMLSSSTILPSPHSFAAAFTAAARAHSASAGAVVHALACKLP 147

Query: 445 FLSV-VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503
             S  V VST L+++Y K G +  A  +F E+P +++  V W+ ++AGY      + A  
Sbjct: 148 SASSNVFVSTALLNMYCKLGLIPDAQLVFDEMPHRNE--VSWAAMVAGYAARKCSQEAFE 205

Query: 504 LFKEMV-QSGVQPNEVTFTSALHACS-----------HGGLLDEGLDLFNFMLENHQTCS 551
           LF++M+ +  +  NE   T+ L A S           HG ++ +G+  F   +EN     
Sbjct: 206 LFRQMLGECPLHKNEFVATAVLSAISVPLGLPMGVQVHGLVVKDGMVGF-VSVEN----- 259

Query: 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVE 602
                  +V +  +AG +D A+ +  +   + +   W A++     +GN E
Sbjct: 260 ------SLVTMYAKAGCMDAAFHVFESSKERNS-ITWSAMITGYSQNGNAE 303


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 216/671 (32%), Positives = 345/671 (51%), Gaps = 73/671 (10%)

Query: 51  SSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEY 107
           +S++ AY   G ++N R LFD M +R+   +N+++  Y  N    D+ ++F  M +    
Sbjct: 50  NSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFK---- 105

Query: 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF--DMDTFVGNCLIAMYMNFGEVKAA 165
             D Y++ ++I   T     ++G     R L        DT   N LIA Y      + A
Sbjct: 106 -RDIYSWTLMITCYT-----RIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREA 159

Query: 166 RKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD------------------------ 201
           +K+FD M   +VVSWN+++SGY KN   +  L  F+                        
Sbjct: 160 KKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLD 219

Query: 202 --WML-KSGVEPDCASVVSVLPACG-YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY 257
             WM  K    P+  S V++L     Y +  E   + +E+       KN+ +WNA++  Y
Sbjct: 220 SAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPT-----KNLVSWNAMIGAY 274

Query: 258 VKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
           V+   +++A  +F  M E+D V+WT+MINGY   G +  A  +  LM ++ +   +  I 
Sbjct: 275 VRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMIN 334

Query: 318 SLL-------------------SAC-SSLY--YLKRGRSLHAWTIKQNLECEVIVE-TAL 354
             L                   S C +S+   Y   GR+  A  + Q + C+ +V    +
Sbjct: 335 GYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTM 394

Query: 355 IDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
           I  YA+   +  + ++F    ++  V WN+++ G V NGL  +A+  F  M  +  +P+ 
Sbjct: 395 IAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQ 454

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
            T+   L A A LA L   + +H   I+ GF + + V   ++ +Y+K G +  A  +F+E
Sbjct: 455 TTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAE 514

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
           I  K+KD+V W+ +IAGY ++G G+ AV LF+ M   G+ P+EVTFT  L AC+HGG +D
Sbjct: 515 I--KNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVD 572

Query: 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
           +GL+LF  M E +    +++HY C+++LLGR GRL+EA ++++ M    +  +WGALL A
Sbjct: 573 QGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWA 632

Query: 595 CVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP 654
           C IH N+EL + +A+ L  LEP+N  NYVLLS +++   RW   E VR +M E    K P
Sbjct: 633 CRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAEKQP 692

Query: 655 AHSLIEVRNIL 665
             S IE+ N L
Sbjct: 693 GCSWIEIDNQL 703



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/429 (24%), Positives = 189/429 (44%), Gaps = 54/429 (12%)

Query: 147 FVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKS 206
           F  N  I+     G ++ A  VF  M E ++V++N++IS Y KN     A  +FD M + 
Sbjct: 16  FTQNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQR 75

Query: 207 GV---------------------------EPDCASVVSVLPACGYLKEIEMGRMIHELVA 239
            +                           + D  S   ++     + E+E  R +  L+ 
Sbjct: 76  NLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLP 135

Query: 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALG 299
                ++    NAL+  Y K     EA+ +FD M  ++VV+W S+++GY  NG ++  L 
Sbjct: 136 D---KQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQ 192

Query: 300 LFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVE-TALIDMY 358
            F+ M    V   +L +           Y+  G    AW   + +    +V    ++  +
Sbjct: 193 FFEAMGERNVVSWNLMVDG---------YVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGF 243

Query: 359 AKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN 418
           A    +  +  +F     K  V WNA++   V       A +LF    +E+ E +  +  
Sbjct: 244 AHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLF----MEMPEKDSVSWT 299

Query: 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
           +++  Y  +  L QA  I   L+ Y     +   T +I+ Y + G ++ A++IFS+I ++
Sbjct: 300 AMINGYVRVGKLLQAREI-LNLMPY---KNIAAQTAMINGYLQSGRMDEANEIFSQISVR 355

Query: 479 DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLD 538
           D   V W+ +I GY   G  + A+ LF+EMV   +    V++ + + A +  G +D+ L+
Sbjct: 356 DS--VCWNSMITGYAHCGRTDEALRLFQEMVCKDM----VSWNTMIAAYAQAGQMDKALE 409

Query: 539 LFNFMLENH 547
           +FN M E +
Sbjct: 410 MFNEMQERN 418



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 165/352 (46%), Gaps = 38/352 (10%)

Query: 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300
           G  G  +   N  +    + G + EA  VF +M+ER++VT+ SMI+ YA NG + NA  L
Sbjct: 9   GEKGSYVFTQNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANAREL 68

Query: 301 FQLM-QFEGVRPNSLTIG----SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355
           F LM Q   V  NS+  G     L+   + L+     R +++WT+             +I
Sbjct: 69  FDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTL-------------MI 115

Query: 356 DMYAKCNLVKLSFQVFA-RTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND 414
             Y +   ++ + ++F     K+ TV  NA++AG     L R+A +LF +MLV+    N 
Sbjct: 116 TCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVK----NV 171

Query: 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474
            + NS+L  Y     +Q  +    +    G  +VV  +  ++D Y   G L+SA   F +
Sbjct: 172 VSWNSILSGYTKNGKMQLGLQ---FFEAMGERNVVSWNL-MVDGYVGVGDLDSAWMFFKK 227

Query: 475 IPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534
           IP    ++V W  +++G+  +G    A +LF EM       N V++ + + A      +D
Sbjct: 228 IPT--PNVVSWVTMLSGFAHYGRMTEARNLFNEMPTK----NLVSWNAMIGAYVRENQID 281

Query: 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
           +   LF  M E          +T +++   R G+L +A +++  MP K   A
Sbjct: 282 DAYKLFMEMPEKDSV-----SWTAMINGYVRVGKLLQAREILNLMPYKNIAA 328



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 166/349 (47%), Gaps = 29/349 (8%)

Query: 245 KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM 304
           +NI  +N+++  Y K G +  AR +FD M +R++V+W SMI GY  N  V +A  LF  M
Sbjct: 44  RNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRM 103

Query: 305 QFEGVRPNSLTIGSLLSACSSLYYLKRGRSL-HAWTIKQNLECEVIVETALIDMYAKCNL 363
               +   +L    +++  + +  L++ R L +    KQ+  C      ALI  YAK  L
Sbjct: 104 FKRDIYSWTL----MITCYTRIGELEKARELFNLLPDKQDTVC----RNALIAGYAKKRL 155

Query: 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
            + + ++F     K  V WN+IL+G   NG  +  ++ F  M     E N  + N ++  
Sbjct: 156 FREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAM----GERNVVSWNLMVDG 211

Query: 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483
           Y  + DL  A      +     +S V + +G    ++  G +  A  +F+E+P   K++V
Sbjct: 212 YVGVGDLDSAWMFFKKIPTPNVVSWVTMLSG----FAHYGRMTEARNLFNEMPT--KNLV 265

Query: 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543
            W+ +I  Y      + A  LF EM +     + V++T+ ++     G L +  ++ N M
Sbjct: 266 SWNAMIGAYVRENQIDDAYKLFMEMPEK----DSVSWTAMINGYVRVGKLLQAREILNLM 321

Query: 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALL 592
              +         T +++   ++GR+DEA ++   + ++ +   W +++
Sbjct: 322 PYKNIAAQ-----TAMINGYLQSGRMDEANEIFSQISVRDS-VCWNSMI 364


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 208/619 (33%), Positives = 332/619 (53%), Gaps = 18/619 (2%)

Query: 57   YGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPI 116
            +G   + + +F++M  R+    N +M    +      + K+F  M  L   N D+Y   +
Sbjct: 803  FGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYV--V 860

Query: 117  VIKACTDLA----WRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDA 171
            ++ A ++ +     R+ G  +H  V+ TG  D    +GN L+ MY   G +  A  VF+ 
Sbjct: 861  LLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFEL 920

Query: 172  MWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231
            M E   VSWN+LISG  +N  +++A   F  M ++G  P   +++S L +C  L  I +G
Sbjct: 921  MVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLG 980

Query: 232  RMIHELVAGGRLG--KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
              IH    G +LG   +++  NAL+ +Y + G   E   VF  M E D V+W S+I   +
Sbjct: 981  EQIH--CDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALS 1038

Query: 290  -LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348
                 V  A+  F  M   G   + +T  ++LSA SSL   +    +HA  +K  L  + 
Sbjct: 1039 DSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDT 1098

Query: 349  IVETALIDMYAKCNLVKLSFQVFARTSK-KKTVPWNAILAGCVHNGLARKAVELFRQMLV 407
             +  AL+  Y KC  +    ++FAR S+ +  V WN++++G +HN L  KA++L   M+ 
Sbjct: 1099 AIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQ 1158

Query: 408  EVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467
            +    +  T  ++L A A +A L++ M +H   IR    S V V + L+D+YSKCG ++ 
Sbjct: 1159 KGQRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDY 1218

Query: 468  AHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT-FTSALHA 526
            A + F  +P+++  +  W+ +I+GY  HGHGE A+ LF  M+  G  P+ V      L A
Sbjct: 1219 ASRFFELMPLRN--VYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSA 1276

Query: 527  CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
            CSH G ++EG + F  M E ++   R +H++C+VDLLGRAG+LDE  D I +MP+KP   
Sbjct: 1277 CSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVL 1336

Query: 587  VWGALLGACVIHG--NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644
            +W  +LGAC      N ELG  AA+ L ELEP+N  NYVLL+ +Y++  +W+D    R  
Sbjct: 1337 IWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARXA 1396

Query: 645  MDEKGLRKAPAHSLIEVRN 663
            M E  ++K    S + +++
Sbjct: 1397 MKEAAVKKEAGCSWVTMKD 1415



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 142/468 (30%), Positives = 241/468 (51%), Gaps = 11/468 (2%)

Query: 33   KQLHAFIITSG--PLFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQ 87
            +++HA +I +G       + + LV  Y   G +++   +F+ M E+ S  +N+++    Q
Sbjct: 879  REVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQ 938

Query: 88   NGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTF 147
            N  S D+ + FL M R G   P N+T    + +C  L W  LG  +H   L  G D D  
Sbjct: 939  NECSEDAAESFLRMRRTGSM-PSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVS 997

Query: 148  VGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN-AYAKEALVVFDWMLKS 206
            V N L+A+Y   G      KVF  M E+  VSWN++I     + A   +A+  F  M++ 
Sbjct: 998  VSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRG 1057

Query: 207  GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266
            G      + +++L A   L   E+   IH LV    L  + A  NAL+  Y KCG +NE 
Sbjct: 1058 GWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNEC 1117

Query: 267  RLVFDRMSE-RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325
              +F RMSE RD V+W SMI+GY  N  +  A+ L   M  +G R +S T  ++LSAC+S
Sbjct: 1118 EKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACAS 1177

Query: 326  LYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAI 385
            +  L+RG  +HA  I+  +E +V+V +AL+DMY+KC  +  + + F     +    WN++
Sbjct: 1178 VATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSM 1237

Query: 386  LAGCVHNGLARKAVELFRQMLVEVVEPND-ATLNSLLPAYAILADLQQAMNIHCYLIR-Y 443
            ++G   +G   KA++LF +M+++   P+  A L  +L A + +  +++       +   Y
Sbjct: 1238 ISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVY 1297

Query: 444  GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAG 491
                 VE  + ++D+  + G L+      + +P+K  ++++W  ++  
Sbjct: 1298 RLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMK-PNVLIWRTVLGA 1344



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 142/480 (29%), Positives = 243/480 (50%), Gaps = 27/480 (5%)

Query: 133  LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAY 192
            LH + +  GF  + F+ N LI +Y+  G++ +A+K+FD M   ++V+W  LISGY +N  
Sbjct: 566  LHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGK 625

Query: 193  AKEALVVFDWMLKSGVEPDCASVVSVLPAC--GYLKEIEMGRMIHELVAGGRLGKNIAAW 250
              EA   F  M+++G  P+  +  S L AC        ++G  IH L++  R G ++   
Sbjct: 626  PDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVC 685

Query: 251  NALVDMYVKC-GSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGV 309
            N L+ MY  C  S N+AR VFDR+  R+ ++W S+I+ Y+  GD  +A  LF  MQ EG+
Sbjct: 686  NVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGL 745

Query: 310  ----RPNSLTIGSLLS-ACSSLYY-LKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363
                +PN  T GSL++ ACSS+ + L     + A   K     ++ V +AL+  +A+  L
Sbjct: 746  GFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGL 805

Query: 364  VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423
               +  +F +   +  V  N ++ G V       A ++F +M  ++V  N  +   LL A
Sbjct: 806  TDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM-KDLVGINSDSYVVLLSA 864

Query: 424  YAILADLQQ----AMNIHCYLIRYGF-LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK 478
            ++  + L++       +H ++IR G   + V +  GL+++Y+K G++  A  +F E+ + 
Sbjct: 865  FSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVF-ELMV- 922

Query: 479  DKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG--LLDEG 536
            +KD V W+ +I+G   +   E A   F  M ++G  P+  T  S L +C+  G  +L E 
Sbjct: 923  EKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQ 982

Query: 537  L--DLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGA 594
            +  D     L+   + S A     ++ L    G   E   +   MP +     W +++GA
Sbjct: 983  IHCDGLKLGLDTDVSVSNA-----LLALYAETGCFTECLKVFSLMP-EYDQVSWNSVIGA 1036



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 164/614 (26%), Positives = 286/614 (46%), Gaps = 40/614 (6%)

Query: 8    TLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSG---PLFTHLRSSLVRAY---GHVS 61
            TL  ++     L+ +Y  +      ++LH   I  G    LF  L ++L+  Y   G + 
Sbjct: 539  TLFSSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLF--LSNTLINIYVRIGDLG 596

Query: 62   NVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC 121
            + + LFDEMS R+   +  ++  Y QNG   ++   F  M+R G + P++Y +   ++AC
Sbjct: 597  SAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAG-FIPNHYAFGSALRAC 655

Query: 122  TDLAWR--KLGIALHGRVLITGFDMDTFVGNCLIAMYMN-FGEVKAARKVFDAMWEHSVV 178
             +      KLG+ +HG +  T +  D  V N LI+MY +       AR VFD +   + +
Sbjct: 656  QESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSI 715

Query: 179  SWNTLISGYFKNAYAKEALVVFDWMLKSGV----EPDCASVVSVLPACGYLKEIEMG--- 231
            SWN++IS Y +      A  +F  M K G+    +P+  +  S++ A      ++ G   
Sbjct: 716  SWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAA--CSSVDFGLCV 773

Query: 232  --RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
              +M+  +   G L +++   +ALV  + + G  ++A+ +F++M  R+VV+   ++ G  
Sbjct: 774  LEQMLARVEKSGFL-QDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLV 832

Query: 290  LNGDVRNALGLFQLMQ-FEGVRPNSLTIGSLLSACSSLYYL----KRGRSLHAWTIKQNL 344
                   A  +F  M+   G+  +S  +  LLSA S    L    ++GR +HA  I+  L
Sbjct: 833  KQKQGEAAAKVFHEMKDLVGINSDSYVV--LLSAFSEFSVLEEGRRKGREVHAHVIRTGL 890

Query: 345  -ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403
             + +V +   L++MYAK   +  +  VF    +K +V WN++++G   N  +  A E F 
Sbjct: 891  NDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFL 950

Query: 404  QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463
            +M      P++ TL S L + A L  +     IHC  ++ G  + V VS  L+ +Y++ G
Sbjct: 951  RMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETG 1010

Query: 464  SLESAHKIFSEIPIKDKDIVVW-SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522
                  K+FS +P  + D V W SVI A          AV  F EM++ G   + VTF +
Sbjct: 1011 CFTECLKVFSLMP--EYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFIN 1068

Query: 523  ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMP 580
             L A S   L +    +   +L   + C   D      ++   G+ G ++E   +   M 
Sbjct: 1069 ILSAVSSLSLHEVSHQIHALVL---KYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMS 1125

Query: 581  LKPTHAVWGALLGA 594
                   W +++  
Sbjct: 1126 ETRDEVSWNSMISG 1139



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 190/421 (45%), Gaps = 30/421 (7%)

Query: 229 EMGRMIH-ELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMING 287
           E  R +H + +  G +G N+   N L+++YV+ G +  A+ +FD MS R++VTW  +I+G
Sbjct: 561 EEARELHLQSIKYGFVG-NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISG 619

Query: 288 YALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC--SSLYYLKRGRSLHAWTIKQNLE 345
           Y  NG    A   F+ M   G  PN    GS L AC  S     K G  +H    K    
Sbjct: 620 YTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYG 679

Query: 346 CEVIVETALIDMYAKC-NLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ 404
            +V+V   LI MY  C +    +  VF R   + ++ WN+I++     G    A +LF  
Sbjct: 680 SDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSS 739

Query: 405 MLVE----VVEPNDATLNSLLPAYAILAD-----LQQAMNIHCYLIRYGFLSVVEVSTGL 455
           M  E      +PN+ T  SL+ A     D     L+Q +     + + GFL  + V + L
Sbjct: 740 MQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQML---ARVEKSGFLQDLYVGSAL 796

Query: 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP 515
           +  +++ G  + A  IF ++ +  +++V  + ++ G      GE A  +F EM +  V  
Sbjct: 797 VSGFARFGLTDDAKNIFEQMGV--RNVVSMNGLMVGLVKQKQGEAAAKVFHEM-KDLVGI 853

Query: 516 NEVTFTSALHACSHGGLLDE----GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571
           N  ++   L A S   +L+E    G ++   ++      ++      +V++  ++G + +
Sbjct: 854 NSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIAD 913

Query: 572 AYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLLSKLY 629
           A  +   M  K +   W +L+         E  E AA+    +      P N+ L+S L 
Sbjct: 914 ACSVFELMVEKDS-VSWNSLISGL---DQNECSEDAAESFLRMRRTGSMPSNFTLISTLS 969

Query: 630 S 630
           S
Sbjct: 970 S 970



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 147/333 (44%), Gaps = 23/333 (6%)

Query: 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVF 371
           +S T  SL++        +  R LH  +IK      + +   LI++Y +   +  + ++F
Sbjct: 543 SSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLF 602

Query: 372 ARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA--YAILAD 429
              S +  V W  +++G   NG   +A   FR M+     PN     S L A   +  + 
Sbjct: 603 DEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSG 662

Query: 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC-GSLESAHKIFSEIPIKDKDIVVWSVI 488
            +  + IH  + +  + S V V   LI +Y  C  S   A  +F  I I++   + W+ I
Sbjct: 663 CKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNS--ISWNSI 720

Query: 489 IAGYGMHGHGETAVSLFKEMVQSGV----QPNEVTFTSALH-ACSHGGLLDEGLDLFNFM 543
           I+ Y   G   +A  LF  M + G+    +PNE TF S +  ACS    +D GL +   M
Sbjct: 721 ISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSS---VDFGLCVLEQM 777

Query: 544 LEN-HQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGN 600
           L    ++    D Y  + +V    R G  D+A ++   M ++   ++ G ++G       
Sbjct: 778 LARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLV----K 833

Query: 601 VELGEVAAKWLFELEPE---NPGNYVLLSKLYS 630
            + GE AAK   E++     N  +YV+L   +S
Sbjct: 834 QKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFS 866


>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 190/553 (34%), Positives = 303/553 (54%), Gaps = 30/553 (5%)

Query: 137 VLITGFDMDTFVGNCLIAM-------YMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFK 189
           ++ITG  +D F  + LIA        Y+N+       K+   +   +  SWN  I G+ +
Sbjct: 1   MVITGLVLDPFASSRLIAFCALSESRYLNY-----CVKILKGIENPNAFSWNVTIRGFSE 55

Query: 190 NAYAKEALVVFDWMLKSGV---EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKN 246
           +   K+A++ +  ML+ G     PD  +   +   C  L+   +G MI   V   RL   
Sbjct: 56  SENPKDAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELV 115

Query: 247 IAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306
               NA + M+  CG +  AR VFD    RD+V+W  +INGY   G+   A+ ++++M+ 
Sbjct: 116 SHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMES 175

Query: 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKC----- 361
           EGV+P+ +T+  L+S+C+ L  L RG+  + +     L   + +  AL+DM++KC     
Sbjct: 176 EGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHE 235

Query: 362 ------NLVKLSF--QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413
                 NL K +   ++F    +K  V WNA++ G V    ++ A+ LF++M     +P+
Sbjct: 236 ARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPD 295

Query: 414 DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFS 473
           + T+   L A + L  L   + IH Y+ ++     V + T L+D+Y+KCG++  A  +F 
Sbjct: 296 EITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFH 355

Query: 474 EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533
              I+ ++ + ++ II G  +HG   TA+S F EM+ +G+ P+E+TF   L AC HGG++
Sbjct: 356 --GIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMI 413

Query: 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593
             G D F+ M        +  HY+ +VDLLGRAG L+EA  L+ +MP++   AVWGALL 
Sbjct: 414 QTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPMEADAAVWGALLF 473

Query: 594 ACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKA 653
            C +HGNV+LGE AAK L EL+P + G YVLL  +Y     W+DA+  R +M+E+G+ K 
Sbjct: 474 GCRMHGNVKLGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKI 533

Query: 654 PAHSLIEVRNILT 666
           P  S IEV  I++
Sbjct: 534 PGCSSIEVNGIVS 546



 Score =  235 bits (599), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 150/498 (30%), Positives = 250/498 (50%), Gaps = 26/498 (5%)

Query: 39  IITSGPLFTHLRSSLVRAYGHVSNVRIL------FDEMSERSSFLYNTVMKMYAQNGASH 92
           ++ +G +     SS + A+  +S  R L         +   ++F +N  ++ ++++    
Sbjct: 1   MVITGLVLDPFASSRLIAFCALSESRYLNYCVKILKGIENPNAFSWNVTIRGFSESENPK 60

Query: 93  DSLKMFLGMLRLG--EYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150
           D++  +  MLR G  E  PD++TYP++ K C DL    LG  + G V     ++ + V N
Sbjct: 61  DAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHN 120

Query: 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210
             I M+ + GE++ ARKVFD      +VSWN LI+GY K    ++A+ V+  M   GV+P
Sbjct: 121 ASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKP 180

Query: 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270
           D  +++ ++ +C  L ++  G+  +E V    L   I   NAL+DM+ KCG ++EAR +F
Sbjct: 181 DDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIF 240

Query: 271 DR-------------MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317
           D              M E+DVV W +MI G       ++AL LFQ MQ     P+ +T+ 
Sbjct: 241 DNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNTDPDEITMI 300

Query: 318 SLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK 377
             LSACS L  L  G  +H +  K +L   V + T+L+DMYAKC  +  +  VF     +
Sbjct: 301 HCLSACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALCVFHGIQTR 360

Query: 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437
            ++ + AI+ G   +G A  A+  F +M+   + P++ T   LL A      +Q   +  
Sbjct: 361 NSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYF 420

Query: 438 CYL-IRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG 496
             +  R+     ++  + ++D+  + G LE A K+   +P+ + D  VW  ++ G  MHG
Sbjct: 421 SQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPM-EADAAVWGALLFGCRMHG 479

Query: 497 H---GETAVSLFKEMVQS 511
           +   GE A     E+  S
Sbjct: 480 NVKLGEKAAKKLLELDPS 497



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 193/395 (48%), Gaps = 21/395 (5%)

Query: 45  LFTHLRSSLVRAY---GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGM 101
           L +H+ ++ +  +   G + N R +FDE   R    +N ++  Y + G    +++++  M
Sbjct: 114 LVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVM 173

Query: 102 LRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGE 161
              G   PD+ T   ++ +C  L     G   +  V   G  M   + N L+ M+   G+
Sbjct: 174 ESEG-VKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGD 232

Query: 162 VKAAR-------------KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208
           +  AR             K+FD M E  VV WN +I G  +   +++AL +F  M  S  
Sbjct: 233 IHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSVQAKRSQDALALFQEMQTSNT 292

Query: 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268
           +PD  +++  L AC  L  +++G  IH  +    L  N+A   +LVDMY KCG+++EA  
Sbjct: 293 DPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYAKCGNISEALC 352

Query: 269 VFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYY 328
           VF  +  R+ +T+T++I G AL+GD   A+  F  M   G+ P+ +T   LLSAC     
Sbjct: 353 VFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGM 412

Query: 329 LKRGRSLHAWTIKQ-NLECEVIVETALIDMYAKCNLVKLSFQVFARTS-KKKTVPWNAIL 386
           ++ GR   +    + NL  ++   + ++D+  +  L++ + ++      +     W A+L
Sbjct: 413 IQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPMEADAAVWGALL 472

Query: 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLL 421
            GC  +G  +   +  +++L   ++P+D+ +  LL
Sbjct: 473 FGCRMHGNVKLGEKAAKKLL--ELDPSDSGIYVLL 505


>gi|302817750|ref|XP_002990550.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
 gi|300141718|gb|EFJ08427.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
          Length = 917

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 181/573 (31%), Positives = 315/573 (54%), Gaps = 12/573 (2%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G + N    F  M ER +  +NT++  +AQ G   +++ +F  ML  G   PD +T+  +
Sbjct: 355 GRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEG-ITPDKFTFISI 413

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           I     +   K+   L   ++ +G ++D F+ + LI M+  +G V+ AR +FD M +  +
Sbjct: 414 IDGTARMQEAKI---LSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDDMKDRDI 470

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           V W ++IS Y ++  + +AL     M   G+  +  ++V+ L AC  L  +  G++IH  
Sbjct: 471 VMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGKLIHSH 530

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
                   + A  NAL++MY KCG + EA LVF +   +++V+W ++   Y      R A
Sbjct: 531 AIERGFAASPAVGNALINMYAKCGCLEEADLVFHQCG-KNLVSWNTIAAAYVQRDKWREA 589

Query: 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDM 357
           L LFQ MQ EG++ + ++  ++L+ CSS      G  +H   ++  +E + IV TAL++M
Sbjct: 590 LQLFQEMQLEGLKADKVSFVTVLNGCSSA---SEGSKIHNILLETGMESDHIVSTALLNM 646

Query: 358 YAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417
           Y     +  + ++F+R   +  V WNA++AG   +GL+R+A+++F++M +E V P+  + 
Sbjct: 647 YTASKSLDEASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRMQLEGVAPDKISF 706

Query: 418 NSLLPAYA--ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEI 475
            ++L A++    + L+QA  +   +   G+ +   V   ++ ++ + G L  A + F  I
Sbjct: 707 VTVLNAFSGSSPSSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRLAEARRAFERI 766

Query: 476 PIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535
             +++D   W+VI+  +  HG  E A+ LF+ M Q   +P+ +T  S L ACSHGGL++E
Sbjct: 767 --RERDAASWNVIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSACSHGGLIEE 824

Query: 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595
           G   F  M          +HY C+VDLL RAGRLD+A +L+R MP+  ++ +W  LL AC
Sbjct: 825 GYYHFTSMGREFGIAGSQEHYGCVVDLLARAGRLDQAEELLRKMPVPASYVLWMTLLSAC 884

Query: 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKL 628
            + G+ +  +  A+ + EL+P  P  YV+LS +
Sbjct: 885 KVQGDEKRAKRVAERVMELDPRRPAAYVVLSSV 917



 Score =  244 bits (624), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 156/520 (30%), Positives = 271/520 (52%), Gaps = 9/520 (1%)

Query: 58  GHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIV 117
           G V +   +F  +   S   +N+++  +A++G    + ++F  M +L    PD  T+  V
Sbjct: 51  GCVEDAVTVFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRM-KLQGLAPDRITFVTV 109

Query: 118 IKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV 177
           +  CT       G  LHG VL  G + +  VG  LI MY   G V+ AR+VFD +    V
Sbjct: 110 LDGCTATGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDV 169

Query: 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHEL 237
           VSW ++I  Y ++    EAL +F  M  SGV P+  +  + + AC +++ +  G++IH  
Sbjct: 170 VSWTSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQ 229

Query: 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297
           V       ++    A+V+MY KCGS+ +AR VF+RM   + V+W +++     +G    A
Sbjct: 230 VLEDGFESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEA 289

Query: 298 LGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356
           L  FQ MQ + G  P+ +T  ++L+ACSS   L  G  L+   ++   +  +IV   ++ 
Sbjct: 290 LWYFQRMQLQGGSTPDKVTFITILNACSSPATLTFGELLYECILQCGYDTHLIVGNCIMT 349

Query: 357 MYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT 416
           MY+ C  +  +   F+   ++  + WN I++G    G   +AV LFR+ML E + P+  T
Sbjct: 350 MYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFT 409

Query: 417 LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476
             S++      A +Q+A  +   ++  G    V + + LI+++S+ G++  A  +F +  
Sbjct: 410 FISIIDG---TARMQEAKILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDD-- 464

Query: 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536
           +KD+DIV+W+ II+ Y  HG  + A+   + M   G+  N+ T  +AL+AC+    L EG
Sbjct: 465 MKDRDIVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEG 524

Query: 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576
             + +  +E     S A     ++++  + G L+EA DL+
Sbjct: 525 KLIHSHAIERGFAASPAVG-NALINMYAKCGCLEEA-DLV 562



 Score =  234 bits (597), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 154/551 (27%), Positives = 284/551 (51%), Gaps = 15/551 (2%)

Query: 110 DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVF 169
           D  T+  ++  C   +    G  +H RV  + F  D  V N  I MY   G V+ A  VF
Sbjct: 1   DRGTFLALLGLCAKKSAIAEGRFVHSRVEASEFRRDDLVQNATIHMYGKCGCVEDAVTVF 60

Query: 170 DAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIE 229
            ++   S VSWN+L++ + ++   ++A  +F  M   G+ PD  + V+VL  C    ++ 
Sbjct: 61  QSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCTATGDLS 120

Query: 230 MGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYA 289
            G+++H  V    L +N+    +L+ MY KCG V +AR VFD+++ +DVV+WTSMI  Y 
Sbjct: 121 RGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYV 180

Query: 290 LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI 349
            +     AL LF  M+  GV PN +T  + +SAC+ +  +  G+ +H+  ++   E +V+
Sbjct: 181 QHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFESDVV 240

Query: 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE- 408
           V  A+++MY KC  ++ + +VF R     TV WNAI+A C  +G   +A+  F++M ++ 
Sbjct: 241 VSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQLQG 300

Query: 409 VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESA 468
              P+  T  ++L A +  A L     ++  +++ G+ + + V   ++ +YS CG +++A
Sbjct: 301 GSTPDKVTFITILNACSSPATLTFGELLYECILQCGYDTHLIVGNCIMTMYSSCGRIDNA 360

Query: 469 HKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528
              FS   + ++D + W+ II+G+   G  + AV LF+ M+  G+ P++ TF S +   +
Sbjct: 361 AAFFS--TMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTA 418

Query: 529 HGGLLDEGLDLFNFMLENHQTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTMPLKPTHA 586
               + E   L   M+E+       D +  + ++++  R G + EA  L   M  +    
Sbjct: 419 R---MQEAKILSELMVESG---VELDVFLVSALINMHSRYGNVREARSLFDDMKDRDI-V 471

Query: 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKL--YSAVRRWKDAENVRDV 644
           +W +++ + V HG+ +   +    L  LE     ++ L++ L   +++    + + +   
Sbjct: 472 MWTSIISSYVQHGSSD-DALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGKLIHSH 530

Query: 645 MDEKGLRKAPA 655
             E+G   +PA
Sbjct: 531 AIERGFAASPA 541



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/483 (28%), Positives = 240/483 (49%), Gaps = 13/483 (2%)

Query: 26  TKSIAGTKQLHAFIITSG-PLFTHLRSSLVRA---YGHVSNVRILFDEMSERSSFLYNTV 81
           T  +   K L   ++ SG  L   L S+L+     YG+V   R LFD+M +R   ++ ++
Sbjct: 417 TARMQEAKILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDDMKDRDIVMWTSI 476

Query: 82  MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG 141
           +  Y Q+G+S D+L     ++RL     +++T    + AC  L     G  +H   +  G
Sbjct: 477 ISSYVQHGSSDDALGC-TRLMRLEGLMGNDFTLVTALNACASLTALSEGKLIHSHAIERG 535

Query: 142 FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFD 201
           F     VGN LI MY   G ++ A  VF    ++ +VSWNT+ + Y +    +EAL +F 
Sbjct: 536 FAASPAVGNALINMYAKCGCLEEADLVFHQCGKN-LVSWNTIAAAYVQRDKWREALQLFQ 594

Query: 202 WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261
            M   G++ D  S V+VL  C    E   G  IH ++    +  +     AL++MY    
Sbjct: 595 EMQLEGLKADKVSFVTVLNGCSSASE---GSKIHNILLETGMESDHIVSTALLNMYTASK 651

Query: 262 SVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLS 321
           S++EA  +F RM  RD+V+W +MI G A +G  R A+ +FQ MQ EGV P+ ++  ++L+
Sbjct: 652 SLDEASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVLN 711

Query: 322 AC--SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT 379
           A   SS   LK+ R +      Q  E + IV  A++ M+ +   +  + + F R  ++  
Sbjct: 712 AFSGSSPSSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRLAEARRAFERIRERDA 771

Query: 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439
             WN I+     +G   +A++LFR+M  E   P+  TL S+L A +    +++       
Sbjct: 772 ASWNVIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSACSHGGLIEEGYYHFTS 831

Query: 440 LIR-YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG 498
           + R +G     E    ++D+ ++ G L+ A ++  ++P+     V+W  +++   + G  
Sbjct: 832 MGREFGIAGSQEHYGCVVDLLARAGRLDQAEELLRKMPVP-ASYVLWMTLLSACKVQGDE 890

Query: 499 ETA 501
           + A
Sbjct: 891 KRA 893


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.136    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,228,593,659
Number of Sequences: 23463169
Number of extensions: 419299516
Number of successful extensions: 1120982
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9182
Number of HSP's successfully gapped in prelim test: 2472
Number of HSP's that attempted gapping in prelim test: 875769
Number of HSP's gapped (non-prelim): 63225
length of query: 667
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 518
effective length of database: 8,863,183,186
effective search space: 4591128890348
effective search space used: 4591128890348
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)