Query 005966
Match_columns 667
No_of_seqs 697 out of 3879
Neff 11.5
Searched_HMMs 46136
Date Thu Mar 28 16:24:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 4.6E-98 1E-102 820.2 76.3 654 8-666 81-738 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 5.5E-79 1.2E-83 669.5 66.7 574 71-652 47-623 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1.6E-74 3.6E-79 618.9 59.6 491 174-666 84-575 (697)
4 PLN03081 pentatricopeptide (PP 100.0 9.3E-69 2E-73 574.6 55.7 475 72-550 84-560 (697)
5 PLN03218 maturation of RBCL 1; 100.0 1.2E-67 2.5E-72 566.5 55.9 517 52-586 378-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 4.5E-66 9.7E-71 554.3 61.2 533 107-655 366-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-39 4.9E-44 366.4 70.3 625 10-646 224-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-38 4.1E-43 358.8 69.5 627 10-651 190-869 (899)
9 PRK11447 cellulose synthase su 100.0 1E-28 2.3E-33 278.3 67.3 617 12-646 27-738 (1157)
10 PRK11447 cellulose synthase su 100.0 4.7E-28 1E-32 273.0 59.3 585 52-650 36-702 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 5.1E-25 1.1E-29 236.5 59.7 602 24-648 55-740 (987)
12 PRK09782 bacteriophage N4 rece 100.0 3.3E-24 7.1E-29 230.4 60.6 568 52-649 52-707 (987)
13 KOG2002 TPR-containing nuclear 99.9 6.9E-20 1.5E-24 184.1 50.3 589 52-651 136-801 (1018)
14 KOG4626 O-linked N-acetylgluco 99.9 6.3E-21 1.4E-25 181.7 36.1 444 180-637 51-508 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 1.3E-21 2.8E-26 186.4 29.6 421 218-649 54-486 (966)
16 TIGR00990 3a0801s09 mitochondr 99.9 4.2E-20 9.2E-25 196.0 42.9 423 179-649 129-572 (615)
17 KOG2002 TPR-containing nuclear 99.9 4.7E-19 1E-23 178.2 47.0 627 13-650 41-747 (1018)
18 PRK11788 tetratricopeptide rep 99.9 4.3E-20 9.3E-25 186.5 30.0 298 357-657 44-356 (389)
19 KOG2076 RNA polymerase III tra 99.9 2.1E-16 4.6E-21 158.3 51.5 633 3-644 128-891 (895)
20 KOG0495 HAT repeat protein [RN 99.9 9.3E-16 2E-20 147.8 53.5 626 12-665 245-895 (913)
21 PRK15174 Vi polysaccharide exp 99.9 5.9E-18 1.3E-22 178.8 39.2 333 280-619 44-386 (656)
22 PRK11788 tetratricopeptide rep 99.9 3.3E-19 7.2E-24 180.0 28.3 293 52-349 43-354 (389)
23 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-17 3.4E-22 176.5 42.0 232 383-618 335-575 (615)
24 PRK10049 pgaA outer membrane p 99.9 4.6E-17 1E-21 176.0 45.8 123 181-306 19-144 (765)
25 PRK10049 pgaA outer membrane p 99.9 3.1E-17 6.6E-22 177.3 43.5 398 214-649 17-457 (765)
26 PRK15174 Vi polysaccharide exp 99.8 9.2E-18 2E-22 177.3 37.7 329 315-651 44-384 (656)
27 PRK14574 hmsH outer membrane p 99.8 3.5E-16 7.7E-21 165.4 48.1 441 121-622 44-521 (822)
28 KOG4422 Uncharacterized conser 99.8 2E-15 4.3E-20 138.4 40.7 443 75-579 116-587 (625)
29 PRK14574 hmsH outer membrane p 99.8 5.9E-15 1.3E-19 156.2 49.4 438 52-592 42-524 (822)
30 KOG2003 TPR repeat-containing 99.8 1.1E-17 2.3E-22 154.1 24.3 494 3-634 191-709 (840)
31 KOG2076 RNA polymerase III tra 99.8 9.6E-15 2.1E-19 146.7 47.0 590 52-649 147-850 (895)
32 KOG0495 HAT repeat protein [RN 99.8 6.4E-14 1.4E-18 135.4 49.0 540 89-651 265-849 (913)
33 KOG4422 Uncharacterized conser 99.8 4.5E-15 9.8E-20 136.1 35.0 361 69-512 201-591 (625)
34 KOG2003 TPR repeat-containing 99.7 3.5E-14 7.7E-19 131.2 30.1 437 182-648 206-689 (840)
35 PF13429 TPR_15: Tetratricopep 99.7 4.1E-17 8.8E-22 155.5 10.2 258 386-647 15-276 (280)
36 KOG0547 Translocase of outer m 99.7 3.6E-13 7.8E-18 126.0 33.2 216 425-646 337-564 (606)
37 KOG1915 Cell cycle control pro 99.6 4E-11 8.6E-16 112.1 41.0 466 75-613 73-584 (677)
38 KOG1155 Anaphase-promoting com 99.6 8E-12 1.7E-16 116.4 34.7 254 387-647 235-494 (559)
39 KOG4318 Bicoid mRNA stability 99.6 4E-11 8.7E-16 120.5 40.9 628 8-651 20-811 (1088)
40 KOG1126 DNA-binding cell divis 99.6 7.7E-14 1.7E-18 136.0 21.4 282 363-652 334-624 (638)
41 KOG2047 mRNA splicing factor [ 99.6 2.7E-09 5.8E-14 103.9 51.3 562 29-634 42-709 (835)
42 KOG1915 Cell cycle control pro 99.6 4.2E-10 9.1E-15 105.4 43.9 418 56-511 85-536 (677)
43 KOG4318 Bicoid mRNA stability 99.6 5.2E-12 1.1E-16 126.7 33.6 251 97-363 12-286 (1088)
44 PRK10747 putative protoheme IX 99.6 1.3E-12 2.9E-17 130.2 29.3 277 361-647 97-389 (398)
45 KOG1173 Anaphase-promoting com 99.6 7.5E-12 1.6E-16 119.7 32.0 480 114-647 19-517 (611)
46 TIGR00540 hemY_coli hemY prote 99.6 1.3E-12 2.9E-17 131.1 29.0 287 359-647 95-398 (409)
47 KOG1155 Anaphase-promoting com 99.6 8.6E-12 1.9E-16 116.3 29.4 194 449-645 330-533 (559)
48 PRK10747 putative protoheme IX 99.6 2.4E-12 5.2E-17 128.4 26.5 252 392-650 97-359 (398)
49 KOG1126 DNA-binding cell divis 99.5 4.8E-13 1E-17 130.5 19.1 246 393-649 333-587 (638)
50 PF13429 TPR_15: Tetratricopep 99.5 2.9E-14 6.3E-19 135.9 9.7 228 419-649 13-244 (280)
51 TIGR00540 hemY_coli hemY prote 99.5 2.1E-11 4.6E-16 122.4 29.4 289 289-613 95-398 (409)
52 KOG0547 Translocase of outer m 99.5 1.1E-10 2.4E-15 109.7 30.6 406 77-545 117-565 (606)
53 KOG3785 Uncharacterized conser 99.5 1.3E-09 2.8E-14 98.3 35.6 150 465-617 339-493 (557)
54 KOG2047 mRNA splicing factor [ 99.5 4.4E-09 9.4E-14 102.5 41.5 518 112-648 103-687 (835)
55 KOG1173 Anaphase-promoting com 99.5 2.8E-10 6E-15 109.2 32.4 271 286-596 252-533 (611)
56 TIGR02521 type_IV_pilW type IV 99.5 7.7E-12 1.7E-16 116.6 21.9 201 447-648 29-232 (234)
57 KOG4162 Predicted calmodulin-b 99.5 4.8E-09 1E-13 104.7 40.9 411 241-659 317-793 (799)
58 COG3071 HemY Uncharacterized e 99.5 1.3E-10 2.9E-15 106.9 27.0 278 361-646 97-388 (400)
59 KOG1156 N-terminal acetyltrans 99.4 2.6E-08 5.7E-13 97.6 43.4 608 9-650 3-690 (700)
60 KOG2376 Signal recognition par 99.4 6.3E-09 1.4E-13 100.6 38.3 446 187-657 22-524 (652)
61 COG3071 HemY Uncharacterized e 99.4 3.5E-10 7.6E-15 104.2 28.3 287 190-510 97-389 (400)
62 KOG1129 TPR repeat-containing 99.4 9.9E-12 2.1E-16 110.5 16.9 230 415-649 224-459 (478)
63 COG2956 Predicted N-acetylgluc 99.4 1.4E-10 3.1E-15 103.3 23.7 292 362-656 49-355 (389)
64 KOG1174 Anaphase-promoting com 99.4 4.7E-09 1E-13 96.8 33.3 375 246-626 96-512 (564)
65 KOG0985 Vesicle coat protein c 99.4 2.1E-07 4.5E-12 95.6 46.0 530 78-645 513-1246(1666)
66 COG2956 Predicted N-acetylgluc 99.4 1.2E-09 2.6E-14 97.6 25.6 288 289-612 46-345 (389)
67 KOG1156 N-terminal acetyltrans 99.4 5.7E-08 1.2E-12 95.2 39.2 451 123-645 19-508 (700)
68 COG3063 PilF Tfp pilus assembl 99.3 9.6E-11 2.1E-15 99.6 17.4 164 484-650 37-204 (250)
69 KOG0985 Vesicle coat protein c 99.3 4.2E-07 9.1E-12 93.4 43.2 233 380-644 1105-1337(1666)
70 KOG1129 TPR repeat-containing 99.3 1.3E-10 2.8E-15 103.6 16.0 238 383-625 227-469 (478)
71 KOG3616 Selective LIM binding 99.3 5.9E-08 1.3E-12 96.1 35.5 129 159-305 544-675 (1636)
72 KOG3616 Selective LIM binding 99.3 2E-07 4.4E-12 92.4 39.1 262 355-649 739-1025(1636)
73 KOG2376 Signal recognition par 99.3 1.2E-07 2.6E-12 92.1 36.8 211 81-308 18-254 (652)
74 PRK12370 invasion protein regu 99.3 1.1E-09 2.4E-14 114.4 25.6 246 394-649 276-536 (553)
75 KOG3785 Uncharacterized conser 99.3 4E-08 8.6E-13 89.0 31.0 211 430-651 270-493 (557)
76 PRK12370 invasion protein regu 99.3 6E-10 1.3E-14 116.4 22.4 215 428-648 275-502 (553)
77 TIGR02521 type_IV_pilW type IV 99.3 1.7E-09 3.7E-14 100.7 23.4 195 419-616 36-234 (234)
78 KOG1127 TPR repeat-containing 99.3 4.9E-08 1.1E-12 100.1 34.6 568 59-647 473-1103(1238)
79 PF13041 PPR_2: PPR repeat fam 99.3 1.5E-11 3.3E-16 81.3 6.4 50 175-224 1-50 (50)
80 PRK11189 lipoprotein NlpI; Pro 99.3 8.4E-10 1.8E-14 105.3 21.0 214 428-649 40-266 (296)
81 KOG4162 Predicted calmodulin-b 99.3 3E-07 6.6E-12 92.2 38.5 134 484-620 652-789 (799)
82 PF13041 PPR_2: PPR repeat fam 99.2 2.2E-11 4.8E-16 80.5 6.4 50 276-325 1-50 (50)
83 KOG1840 Kinesin light chain [C 99.2 9.3E-10 2E-14 109.1 20.1 231 416-646 201-477 (508)
84 KOG1127 TPR repeat-containing 99.2 3.9E-07 8.5E-12 93.7 38.7 545 27-579 472-1101(1238)
85 PF12569 NARP1: NMDA receptor- 99.2 1.3E-07 2.7E-12 95.5 33.8 46 599-644 471-516 (517)
86 KOG1840 Kinesin light chain [C 99.2 3.1E-08 6.6E-13 98.5 27.4 203 383-613 245-478 (508)
87 KOG3617 WD40 and TPR repeat-co 99.2 5.7E-06 1.2E-10 83.6 42.5 231 52-305 736-994 (1416)
88 PRK11189 lipoprotein NlpI; Pro 99.2 1.6E-08 3.5E-13 96.5 24.4 234 393-634 40-286 (296)
89 PF04733 Coatomer_E: Coatomer 99.2 1E-09 2.2E-14 102.9 15.2 194 446-648 63-265 (290)
90 KOG1125 TPR repeat-containing 99.1 1.7E-09 3.8E-14 104.4 16.2 222 425-649 296-528 (579)
91 KOG1174 Anaphase-promoting com 99.1 4.5E-07 9.7E-12 84.1 30.7 270 376-652 229-504 (564)
92 PF12569 NARP1: NMDA receptor- 99.1 4.3E-08 9.3E-13 98.8 25.0 255 390-650 15-293 (517)
93 KOG0548 Molecular co-chaperone 99.1 8.3E-07 1.8E-11 85.6 31.1 249 382-643 227-484 (539)
94 COG3063 PilF Tfp pilus assembl 99.1 6.8E-08 1.5E-12 82.6 21.3 196 420-618 41-240 (250)
95 KOG0624 dsRNA-activated protei 99.1 2.6E-07 5.7E-12 83.5 26.0 322 246-623 37-379 (504)
96 KOG3617 WD40 and TPR repeat-co 99.0 9.1E-06 2E-10 82.2 35.6 410 71-543 722-1171(1416)
97 cd05804 StaR_like StaR_like; a 99.0 7.3E-07 1.6E-11 88.8 29.0 261 386-649 50-337 (355)
98 KOG0548 Molecular co-chaperone 99.0 1.2E-06 2.6E-11 84.5 27.8 101 53-156 11-114 (539)
99 PRK10370 formate-dependent nit 99.0 3.8E-08 8.3E-13 87.1 16.4 121 529-651 51-176 (198)
100 KOG4340 Uncharacterized conser 99.0 2.1E-06 4.5E-11 76.3 26.5 382 222-647 20-442 (459)
101 PF04733 Coatomer_E: Coatomer 98.9 8.5E-08 1.8E-12 90.0 17.1 248 359-620 12-271 (290)
102 TIGR03302 OM_YfiO outer membra 98.9 1.5E-07 3.3E-12 87.3 18.7 185 448-649 32-233 (235)
103 PRK04841 transcriptional regul 98.9 0.00018 3.9E-09 81.6 47.1 191 250-440 344-557 (903)
104 cd05804 StaR_like StaR_like; a 98.9 2E-06 4.3E-11 85.7 27.8 191 10-205 3-214 (355)
105 KOG0624 dsRNA-activated protei 98.8 3.8E-05 8.3E-10 69.9 30.8 173 382-579 192-367 (504)
106 PRK15359 type III secretion sy 98.8 7.9E-08 1.7E-12 80.4 13.0 122 503-630 14-137 (144)
107 PRK15359 type III secretion sy 98.8 9.6E-08 2.1E-12 79.9 13.0 109 537-650 13-123 (144)
108 KOG4340 Uncharacterized conser 98.8 1.3E-05 2.8E-10 71.4 25.9 350 112-508 11-372 (459)
109 PLN02789 farnesyltranstransfer 98.8 1.8E-06 3.8E-11 82.3 22.1 215 428-646 51-300 (320)
110 COG5010 TadD Flp pilus assembl 98.8 5.4E-07 1.2E-11 79.1 16.6 153 488-643 72-226 (257)
111 PRK15179 Vi polysaccharide bio 98.7 8.3E-07 1.8E-11 93.3 20.0 128 517-646 86-215 (694)
112 PLN02789 farnesyltranstransfer 98.7 6.8E-07 1.5E-11 85.1 17.7 190 458-650 46-252 (320)
113 KOG1128 Uncharacterized conser 98.7 7.9E-07 1.7E-11 88.8 17.4 224 411-652 395-620 (777)
114 KOG1070 rRNA processing protei 98.7 2.2E-06 4.8E-11 91.5 20.9 202 446-651 1455-1666(1710)
115 KOG2053 Mitochondrial inherita 98.7 0.00076 1.6E-08 69.8 42.0 215 25-243 21-257 (932)
116 COG4783 Putative Zn-dependent 98.7 8.3E-06 1.8E-10 78.2 22.4 115 526-642 315-431 (484)
117 KOG3060 Uncharacterized conser 98.6 1.7E-06 3.6E-11 75.3 15.2 195 426-623 24-229 (289)
118 COG5010 TadD Flp pilus assembl 98.6 2.4E-06 5.1E-11 75.1 16.2 134 514-649 63-198 (257)
119 PRK10370 formate-dependent nit 98.6 7E-06 1.5E-10 72.8 19.3 154 456-622 23-181 (198)
120 PRK15363 pathogenicity island 98.6 4.8E-07 1E-11 73.9 10.7 97 553-649 35-133 (157)
121 KOG1125 TPR repeat-containing 98.6 3.2E-06 7E-11 82.4 17.6 252 358-640 295-563 (579)
122 KOG1128 Uncharacterized conser 98.6 1.5E-06 3.3E-11 86.8 15.6 190 443-649 392-583 (777)
123 KOG3081 Vesicle coat complex C 98.6 5.5E-06 1.2E-10 72.7 16.9 147 490-646 116-269 (299)
124 PRK14720 transcript cleavage f 98.6 0.00056 1.2E-08 73.2 34.2 234 10-289 28-268 (906)
125 TIGR02552 LcrH_SycD type III s 98.6 9.6E-07 2.1E-11 73.7 11.5 94 556-649 20-115 (135)
126 PF12854 PPR_1: PPR repeat 98.5 1.5E-07 3.2E-12 55.5 4.3 33 242-274 2-34 (34)
127 KOG1914 mRNA cleavage and poly 98.5 0.0013 2.7E-08 64.3 35.3 150 395-545 347-500 (656)
128 PRK14720 transcript cleavage f 98.5 1.9E-05 4.1E-10 84.0 22.4 150 451-630 118-268 (906)
129 PF12854 PPR_1: PPR repeat 98.5 1.4E-07 3E-12 55.7 3.9 33 141-173 2-34 (34)
130 TIGR03302 OM_YfiO outer membra 98.5 1.1E-05 2.4E-10 74.9 18.0 59 558-616 171-234 (235)
131 PRK04841 transcriptional regul 98.5 0.00046 9.9E-09 78.4 34.3 322 224-545 386-759 (903)
132 KOG3060 Uncharacterized conser 98.5 3.1E-05 6.7E-10 67.6 18.2 188 392-583 25-222 (289)
133 KOG3081 Vesicle coat complex C 98.4 0.00015 3.2E-09 64.0 22.1 174 438-620 97-277 (299)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 4.4E-06 9.5E-11 81.1 14.0 122 520-646 172-295 (395)
135 KOG0553 TPR repeat-containing 98.4 9.2E-06 2E-10 73.0 14.6 109 526-636 90-200 (304)
136 PRK15179 Vi polysaccharide bio 98.4 4.4E-05 9.6E-10 80.6 22.2 132 482-617 86-220 (694)
137 TIGR02552 LcrH_SycD type III s 98.4 1.1E-05 2.3E-10 67.4 13.4 115 504-622 5-122 (135)
138 KOG1070 rRNA processing protei 98.4 7.8E-05 1.7E-09 80.3 22.0 208 415-623 1459-1674(1710)
139 COG4783 Putative Zn-dependent 98.4 9E-05 2E-09 71.3 20.2 139 489-649 313-455 (484)
140 PF09976 TPR_21: Tetratricopep 98.3 3E-05 6.5E-10 65.3 13.8 115 530-645 24-144 (145)
141 KOG1914 mRNA cleavage and poly 98.3 0.0059 1.3E-07 59.8 36.6 212 430-644 309-535 (656)
142 PF13414 TPR_11: TPR repeat; P 98.2 1.8E-06 3.9E-11 61.9 5.1 66 584-649 2-68 (69)
143 COG4235 Cytochrome c biogenesi 98.2 1.4E-05 3.1E-10 72.4 10.9 112 548-659 151-267 (287)
144 PF12895 Apc3: Anaphase-promot 98.2 1.3E-06 2.7E-11 65.5 3.6 78 566-644 2-83 (84)
145 PF13432 TPR_16: Tetratricopep 98.2 3.1E-06 6.7E-11 59.8 5.2 59 591-649 3-61 (65)
146 TIGR02795 tol_pal_ybgF tol-pal 98.2 1.7E-05 3.8E-10 64.4 10.4 94 556-649 5-106 (119)
147 KOG2053 Mitochondrial inherita 98.2 0.013 2.8E-07 61.2 42.0 221 58-308 23-256 (932)
148 cd00189 TPR Tetratricopeptide 98.2 1.6E-05 3.5E-10 61.6 9.7 94 556-649 3-98 (100)
149 PF09976 TPR_21: Tetratricopep 98.1 0.00017 3.6E-09 60.8 15.7 126 485-612 15-145 (145)
150 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.0001 2.3E-09 71.7 15.9 127 450-581 170-296 (395)
151 TIGR00756 PPR pentatricopeptid 98.1 5.8E-06 1.3E-10 49.8 4.4 34 178-211 1-34 (35)
152 PF07079 DUF1347: Protein of u 98.1 0.012 2.6E-07 56.5 34.6 242 399-646 245-522 (549)
153 COG4700 Uncharacterized protei 98.1 0.00033 7.1E-09 58.2 15.0 134 513-648 85-222 (251)
154 PLN03088 SGT1, suppressor of 98.1 2.7E-05 5.8E-10 76.4 10.5 108 523-632 8-117 (356)
155 PF13812 PPR_3: Pentatricopept 98.0 8.6E-06 1.9E-10 48.6 4.3 33 178-210 2-34 (34)
156 TIGR02795 tol_pal_ybgF tol-pal 98.0 8.2E-05 1.8E-09 60.4 11.6 105 519-623 4-114 (119)
157 COG3898 Uncharacterized membra 98.0 0.013 2.9E-07 55.0 26.8 280 361-656 97-398 (531)
158 PRK02603 photosystem I assembl 98.0 5.5E-05 1.2E-09 65.9 10.5 94 556-649 38-150 (172)
159 TIGR00756 PPR pentatricopeptid 98.0 1.3E-05 2.9E-10 48.2 4.7 35 483-517 1-35 (35)
160 PLN03088 SGT1, suppressor of 98.0 9E-05 1.9E-09 72.7 12.8 103 488-593 8-111 (356)
161 KOG0553 TPR repeat-containing 98.0 2.1E-05 4.5E-10 70.8 7.4 90 560-649 88-179 (304)
162 PF13812 PPR_3: Pentatricopept 98.0 1.6E-05 3.4E-10 47.4 4.4 33 279-311 2-34 (34)
163 CHL00033 ycf3 photosystem I as 97.9 7.5E-05 1.6E-09 64.8 10.2 93 552-644 34-138 (168)
164 PF14559 TPR_19: Tetratricopep 97.9 9.6E-06 2.1E-10 57.9 3.8 54 596-649 2-55 (68)
165 PF13371 TPR_9: Tetratricopept 97.9 2.8E-05 6.1E-10 56.4 6.0 59 592-650 2-60 (73)
166 PF12895 Apc3: Anaphase-promot 97.8 5.3E-05 1.1E-09 56.7 6.5 80 495-577 2-82 (84)
167 PRK10153 DNA-binding transcrip 97.8 0.00055 1.2E-08 70.2 15.8 140 481-622 336-490 (517)
168 cd00189 TPR Tetratricopeptide 97.8 0.00021 4.6E-09 55.1 10.3 93 522-616 5-99 (100)
169 KOG0550 Molecular chaperone (D 97.8 0.00042 9.2E-09 65.1 13.3 157 490-650 177-352 (486)
170 PF05843 Suf: Suppressor of fo 97.8 0.00045 9.8E-09 65.2 14.1 135 483-620 2-142 (280)
171 KOG1538 Uncharacterized conser 97.8 0.0065 1.4E-07 60.7 21.7 86 517-612 747-844 (1081)
172 PRK02603 photosystem I assembl 97.8 0.0005 1.1E-08 59.9 13.1 130 482-634 35-166 (172)
173 PF04840 Vps16_C: Vps16, C-ter 97.8 0.035 7.7E-07 53.1 28.7 104 456-578 184-287 (319)
174 PF13432 TPR_16: Tetratricopep 97.8 5.4E-05 1.2E-09 53.4 5.5 61 559-619 3-65 (65)
175 PRK10866 outer membrane biogen 97.8 0.0022 4.8E-08 59.0 17.4 176 454-646 37-239 (243)
176 PRK15331 chaperone protein Sic 97.8 0.00019 4.2E-09 59.2 9.2 87 561-647 45-133 (165)
177 PF07079 DUF1347: Protein of u 97.8 0.042 9.2E-07 53.0 36.3 125 459-588 389-528 (549)
178 PRK10153 DNA-binding transcrip 97.7 0.0014 2.9E-08 67.4 15.5 136 512-650 332-484 (517)
179 PF01535 PPR: PPR repeat; Int 97.7 5.5E-05 1.2E-09 43.8 3.4 31 178-208 1-31 (31)
180 CHL00033 ycf3 photosystem I as 97.7 0.0025 5.4E-08 55.3 15.2 63 483-545 36-100 (168)
181 PRK15363 pathogenicity island 97.7 0.00058 1.3E-08 56.2 10.1 94 520-615 38-133 (157)
182 PF14559 TPR_19: Tetratricopep 97.7 6E-05 1.3E-09 53.8 4.0 62 565-626 3-66 (68)
183 PF13431 TPR_17: Tetratricopep 97.6 2.4E-05 5.2E-10 46.1 1.5 34 607-640 1-34 (34)
184 COG3898 Uncharacterized membra 97.6 0.063 1.4E-06 50.7 23.9 260 382-648 85-358 (531)
185 PRK10803 tol-pal system protei 97.6 0.00034 7.4E-09 64.7 9.4 98 520-617 146-249 (263)
186 PF01535 PPR: PPR repeat; Int 97.6 8.2E-05 1.8E-09 43.1 3.4 31 279-309 1-31 (31)
187 KOG2041 WD40 repeat protein [G 97.5 0.14 3.1E-06 52.1 27.9 152 226-405 748-904 (1189)
188 PF08579 RPM2: Mitochondrial r 97.5 0.0012 2.6E-08 50.2 9.2 81 77-158 27-116 (120)
189 PF13428 TPR_14: Tetratricopep 97.5 0.00015 3.2E-09 46.0 3.7 42 586-627 2-43 (44)
190 PF13414 TPR_11: TPR repeat; P 97.5 0.00025 5.4E-09 50.7 5.3 65 552-616 2-69 (69)
191 PF10037 MRP-S27: Mitochondria 97.4 0.0033 7.1E-08 61.8 13.9 118 411-528 63-184 (429)
192 KOG2041 WD40 repeat protein [G 97.4 0.096 2.1E-06 53.3 23.8 156 53-236 743-902 (1189)
193 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00051 1.1E-08 66.6 8.1 63 552-614 74-141 (453)
194 COG4700 Uncharacterized protei 97.4 0.02 4.4E-07 47.9 15.8 125 480-604 87-212 (251)
195 PF08579 RPM2: Mitochondrial r 97.4 0.0025 5.5E-08 48.5 9.7 81 179-259 27-116 (120)
196 PF13371 TPR_9: Tetratricopept 97.4 0.00047 1E-08 49.9 5.9 65 561-625 3-69 (73)
197 PF10037 MRP-S27: Mitochondria 97.4 0.0039 8.4E-08 61.3 13.7 117 208-324 62-184 (429)
198 PF12688 TPR_5: Tetratrico pep 97.3 0.0033 7.1E-08 50.0 10.5 84 561-644 9-100 (120)
199 KOG1130 Predicted G-alpha GTPa 97.3 0.00078 1.7E-08 63.3 7.8 130 518-647 196-343 (639)
200 PF12688 TPR_5: Tetratrico pep 97.3 0.0078 1.7E-07 47.9 12.0 91 488-578 7-100 (120)
201 PF14938 SNAP: Soluble NSF att 97.3 0.0041 8.8E-08 59.2 12.5 133 487-648 40-184 (282)
202 PRK10803 tol-pal system protei 97.3 0.0053 1.1E-07 56.9 12.6 94 556-649 146-247 (263)
203 KOG0550 Molecular chaperone (D 97.2 0.049 1.1E-06 51.8 18.3 256 19-307 55-350 (486)
204 PF13525 YfiO: Outer membrane 97.2 0.0064 1.4E-07 54.5 12.2 168 456-640 12-199 (203)
205 PF14938 SNAP: Soluble NSF att 97.2 0.023 4.9E-07 54.1 16.6 110 456-579 101-222 (282)
206 PF05843 Suf: Suppressor of fo 97.2 0.0037 8E-08 59.1 10.8 129 518-648 2-136 (280)
207 KOG2280 Vacuolar assembly/sort 97.1 0.42 9.2E-06 49.5 29.0 111 516-642 683-793 (829)
208 KOG2796 Uncharacterized conser 97.1 0.033 7.1E-07 49.5 14.9 133 485-617 180-318 (366)
209 COG4235 Cytochrome c biogenesi 97.1 0.025 5.5E-07 51.8 14.9 113 505-620 145-262 (287)
210 KOG0543 FKBP-type peptidyl-pro 97.1 0.006 1.3E-07 58.0 11.1 94 555-648 259-355 (397)
211 KOG2796 Uncharacterized conser 97.1 0.069 1.5E-06 47.6 16.5 131 382-512 180-316 (366)
212 PF13424 TPR_12: Tetratricopep 97.1 0.00061 1.3E-08 50.1 3.6 62 586-647 6-74 (78)
213 PF13512 TPR_18: Tetratricopep 97.1 0.013 2.8E-07 47.5 11.1 91 559-649 16-129 (142)
214 PRK10866 outer membrane biogen 97.0 0.14 3E-06 47.2 19.0 199 75-305 32-239 (243)
215 PF13281 DUF4071: Domain of un 97.0 0.12 2.6E-06 49.9 18.9 161 454-617 146-337 (374)
216 COG0457 NrfG FOG: TPR repeat [ 97.0 0.3 6.5E-06 45.1 25.7 195 451-647 61-264 (291)
217 PRK11906 transcriptional regul 96.9 0.013 2.7E-07 57.4 12.0 145 497-644 273-432 (458)
218 KOG4555 TPR repeat-containing 96.9 0.0075 1.6E-07 47.1 8.3 88 562-649 52-145 (175)
219 PF04840 Vps16_C: Vps16, C-ter 96.9 0.42 9E-06 45.9 27.5 104 383-504 181-284 (319)
220 PF06239 ECSIT: Evolutionarily 96.9 0.011 2.5E-07 51.2 9.9 88 480-568 45-153 (228)
221 PF06239 ECSIT: Evolutionarily 96.8 0.015 3.3E-07 50.5 10.3 89 174-262 44-153 (228)
222 COG4105 ComL DNA uptake lipopr 96.8 0.25 5.5E-06 44.4 18.0 71 590-664 172-245 (254)
223 PF13525 YfiO: Outer membrane 96.8 0.039 8.5E-07 49.4 13.2 141 488-648 11-170 (203)
224 COG0457 NrfG FOG: TPR repeat [ 96.7 0.46 9.9E-06 43.8 25.8 222 394-617 38-268 (291)
225 KOG0543 FKBP-type peptidyl-pro 96.7 0.0056 1.2E-07 58.2 7.4 65 586-650 258-322 (397)
226 KOG2280 Vacuolar assembly/sort 96.7 1 2.2E-05 46.8 29.3 79 456-542 691-769 (829)
227 PF13424 TPR_12: Tetratricopep 96.6 0.0028 6.2E-08 46.5 4.2 60 555-614 7-75 (78)
228 COG5107 RNA14 Pre-mRNA 3'-end 96.5 0.86 1.9E-05 44.3 32.8 142 449-593 397-543 (660)
229 PF03704 BTAD: Bacterial trans 96.5 0.0091 2E-07 50.3 6.9 68 587-654 64-136 (146)
230 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.02 4.3E-07 56.0 9.2 59 518-579 76-138 (453)
231 COG3118 Thioredoxin domain-con 96.3 0.16 3.4E-06 46.6 13.9 116 528-646 145-263 (304)
232 KOG1538 Uncharacterized conser 96.3 0.52 1.1E-05 47.8 18.2 88 551-647 745-845 (1081)
233 KOG1130 Predicted G-alpha GTPa 96.3 0.06 1.3E-06 51.1 11.3 95 519-613 237-343 (639)
234 KOG1941 Acetylcholine receptor 96.2 0.037 8.1E-07 51.6 9.4 239 389-630 16-288 (518)
235 KOG4234 TPR repeat-containing 96.1 0.02 4.3E-07 48.6 6.4 101 524-626 102-209 (271)
236 KOG1941 Acetylcholine receptor 96.1 0.18 3.8E-06 47.3 12.9 221 359-579 17-272 (518)
237 KOG1258 mRNA processing protei 96.0 2.1 4.5E-05 43.6 30.3 128 74-205 44-179 (577)
238 PRK11906 transcriptional regul 96.0 0.34 7.3E-06 47.8 15.2 146 464-613 273-435 (458)
239 PF04184 ST7: ST7 protein; In 95.9 0.5 1.1E-05 46.7 16.0 121 520-641 262-407 (539)
240 COG5107 RNA14 Pre-mRNA 3'-end 95.9 1.8 4E-05 42.2 30.1 130 484-617 399-534 (660)
241 PRK15331 chaperone protein Sic 95.9 0.15 3.3E-06 42.5 10.9 20 560-579 112-131 (165)
242 PF07719 TPR_2: Tetratricopept 95.9 0.019 4.1E-07 33.7 4.4 32 587-618 3-34 (34)
243 KOG2610 Uncharacterized conser 95.9 0.077 1.7E-06 49.0 9.9 160 493-655 114-283 (491)
244 PF09205 DUF1955: Domain of un 95.9 0.5 1.1E-05 37.5 12.8 141 492-651 12-152 (161)
245 PF10300 DUF3808: Protein of u 95.9 0.35 7.5E-06 49.6 16.0 115 530-647 246-375 (468)
246 COG1729 Uncharacterized protei 95.9 0.054 1.2E-06 49.1 8.7 101 519-620 144-250 (262)
247 PF12921 ATP13: Mitochondrial 95.9 0.12 2.6E-06 41.7 9.9 96 449-562 2-97 (126)
248 PF08631 SPO22: Meiosis protei 95.8 1.7 3.7E-05 41.2 24.7 100 416-516 86-191 (278)
249 KOG2114 Vacuolar assembly/sort 95.8 3.3 7.1E-05 44.0 26.1 54 454-509 710-763 (933)
250 PF03704 BTAD: Bacterial trans 95.8 0.063 1.4E-06 45.2 8.6 72 77-150 64-140 (146)
251 smart00299 CLH Clathrin heavy 95.8 0.5 1.1E-05 39.3 13.9 42 487-529 12-53 (140)
252 PF00515 TPR_1: Tetratricopept 95.8 0.018 3.8E-07 33.9 3.7 32 586-617 2-33 (34)
253 COG3118 Thioredoxin domain-con 95.7 0.97 2.1E-05 41.7 16.0 151 490-642 142-295 (304)
254 KOG2610 Uncharacterized conser 95.7 0.31 6.6E-06 45.3 12.7 160 459-621 113-285 (491)
255 COG1729 Uncharacterized protei 95.7 0.12 2.6E-06 46.9 10.2 85 495-579 154-241 (262)
256 PF13281 DUF4071: Domain of un 95.7 1.6 3.5E-05 42.5 18.3 91 388-478 150-255 (374)
257 COG3947 Response regulator con 95.7 0.76 1.7E-05 42.0 14.8 60 587-646 281-340 (361)
258 KOG1258 mRNA processing protei 95.7 3 6.5E-05 42.5 32.0 182 449-633 297-489 (577)
259 KOG1585 Protein required for f 95.5 1.1 2.3E-05 40.0 14.8 23 382-404 34-56 (308)
260 KOG2114 Vacuolar assembly/sort 95.5 4.2 9E-05 43.2 30.3 54 559-613 711-764 (933)
261 smart00299 CLH Clathrin heavy 95.5 0.98 2.1E-05 37.6 14.6 126 452-597 10-137 (140)
262 KOG4555 TPR repeat-containing 95.5 0.12 2.5E-06 40.7 7.9 90 526-617 52-147 (175)
263 PF13512 TPR_18: Tetratricopep 95.3 0.59 1.3E-05 38.1 11.8 116 489-620 17-134 (142)
264 PF10345 Cohesin_load: Cohesin 95.2 5.4 0.00012 42.9 31.8 49 598-646 547-604 (608)
265 COG4785 NlpI Lipoprotein NlpI, 95.2 0.89 1.9E-05 39.6 13.0 178 463-648 79-266 (297)
266 COG1747 Uncharacterized N-term 95.1 4 8.7E-05 40.7 21.2 178 447-631 64-251 (711)
267 COG4785 NlpI Lipoprotein NlpI, 94.9 2.4 5.2E-05 37.1 15.7 130 52-187 73-208 (297)
268 KOG4648 Uncharacterized conser 94.9 0.044 9.5E-07 50.7 4.9 95 524-620 104-200 (536)
269 KOG1550 Extracellular protein 94.9 4.4 9.6E-05 42.8 20.4 251 389-649 259-539 (552)
270 PF04053 Coatomer_WDAD: Coatom 94.8 0.79 1.7E-05 46.3 14.0 157 83-272 269-427 (443)
271 PF04184 ST7: ST7 protein; In 94.8 0.77 1.7E-05 45.5 13.1 54 559-612 265-322 (539)
272 KOG3941 Intermediate in Toll s 94.7 0.35 7.7E-06 43.7 9.9 97 166-262 54-173 (406)
273 PF12921 ATP13: Mitochondrial 94.7 0.44 9.6E-06 38.4 9.7 95 211-323 1-98 (126)
274 PF10300 DUF3808: Protein of u 94.6 2.6 5.7E-05 43.3 17.4 162 382-545 191-375 (468)
275 PF13176 TPR_7: Tetratricopept 94.5 0.06 1.3E-06 32.1 3.3 26 621-646 1-26 (36)
276 PF04053 Coatomer_WDAD: Coatom 94.4 1.1 2.3E-05 45.4 13.8 157 458-645 270-428 (443)
277 PF09205 DUF1955: Domain of un 94.3 2.2 4.8E-05 34.0 13.4 138 391-549 14-151 (161)
278 PF13428 TPR_14: Tetratricopep 94.1 0.082 1.8E-06 33.3 3.5 32 619-650 1-32 (44)
279 COG2976 Uncharacterized protei 94.1 2.6 5.6E-05 36.3 13.1 114 500-617 70-191 (207)
280 PF09613 HrpB1_HrpK: Bacterial 94.0 2.4 5.3E-05 35.4 12.7 94 528-624 21-115 (160)
281 KOG4234 TPR repeat-containing 93.9 0.82 1.8E-05 39.3 9.9 85 491-579 104-194 (271)
282 KOG3941 Intermediate in Toll s 93.8 0.67 1.4E-05 42.1 9.7 110 469-579 54-185 (406)
283 PF13181 TPR_8: Tetratricopept 93.8 0.11 2.3E-06 30.4 3.5 31 587-617 3-33 (34)
284 KOG1920 IkappaB kinase complex 93.8 3.5 7.6E-05 45.6 16.6 80 525-611 973-1052(1265)
285 PF13176 TPR_7: Tetratricopept 93.7 0.099 2.2E-06 31.1 3.3 28 587-614 1-28 (36)
286 PF07719 TPR_2: Tetratricopept 93.7 0.074 1.6E-06 31.1 2.7 30 620-649 2-31 (34)
287 COG4649 Uncharacterized protei 93.6 1 2.2E-05 37.8 9.7 51 257-307 142-196 (221)
288 KOG1920 IkappaB kinase complex 93.5 15 0.00033 41.0 22.4 174 388-580 860-1053(1265)
289 KOG1586 Protein required for f 93.3 4.9 0.00011 35.8 13.7 62 558-619 118-188 (288)
290 PRK11619 lytic murein transgly 93.3 14 0.0003 39.8 30.5 116 495-613 254-374 (644)
291 PF02259 FAT: FAT domain; Int 93.2 2.3 5E-05 42.1 14.1 65 584-648 145-213 (352)
292 PF02259 FAT: FAT domain; Int 93.1 9.9 0.00022 37.6 19.8 34 599-632 272-305 (352)
293 KOG1585 Protein required for f 92.8 7 0.00015 35.1 14.9 57 520-577 193-251 (308)
294 COG4105 ComL DNA uptake lipopr 92.7 7.7 0.00017 35.3 19.1 54 489-544 174-231 (254)
295 PF00515 TPR_1: Tetratricopept 92.7 0.13 2.7E-06 30.1 2.6 30 620-649 2-31 (34)
296 COG3629 DnrI DNA-binding trans 92.6 0.53 1.1E-05 43.6 7.6 59 555-613 155-215 (280)
297 KOG1586 Protein required for f 92.6 6.8 0.00015 34.9 13.6 19 599-617 209-227 (288)
298 PF13170 DUF4003: Protein of u 92.5 3.7 8.1E-05 39.0 13.3 94 466-562 120-226 (297)
299 TIGR02561 HrpB1_HrpK type III 92.4 0.77 1.7E-05 37.5 7.3 70 565-634 22-93 (153)
300 PF07721 TPR_4: Tetratricopept 91.9 0.19 4E-06 27.3 2.4 24 620-643 2-25 (26)
301 PF07035 Mic1: Colon cancer-as 91.9 7.2 0.00016 33.1 15.8 58 250-307 92-149 (167)
302 PF13170 DUF4003: Protein of u 91.8 3.9 8.5E-05 38.9 12.6 130 395-526 78-226 (297)
303 PF08631 SPO22: Meiosis protei 91.8 12 0.00026 35.5 23.7 17 391-407 5-21 (278)
304 PF06552 TOM20_plant: Plant sp 91.7 0.23 5E-06 42.0 3.8 83 533-617 7-112 (186)
305 PF13174 TPR_6: Tetratricopept 91.6 0.17 3.7E-06 29.2 2.2 28 621-648 2-29 (33)
306 PF00637 Clathrin: Region in C 91.5 0.043 9.4E-07 46.0 -0.7 85 116-203 12-96 (143)
307 PF09613 HrpB1_HrpK: Bacterial 91.1 8.3 0.00018 32.4 13.1 20 459-478 54-73 (160)
308 PRK10941 hypothetical protein; 91.1 0.91 2E-05 42.2 7.5 62 588-649 184-245 (269)
309 KOG4648 Uncharacterized conser 91.0 0.66 1.4E-05 43.3 6.3 87 489-586 104-199 (536)
310 PF13181 TPR_8: Tetratricopept 90.8 0.41 8.8E-06 27.9 3.4 29 620-648 2-30 (34)
311 COG2976 Uncharacterized protei 90.7 7.4 0.00016 33.7 11.7 90 559-649 95-189 (207)
312 PF13174 TPR_6: Tetratricopept 90.7 0.45 9.8E-06 27.3 3.5 30 588-617 3-32 (33)
313 KOG1464 COP9 signalosome, subu 90.4 14 0.0003 33.7 18.5 258 361-625 40-343 (440)
314 PF14853 Fis1_TPR_C: Fis1 C-te 90.3 0.79 1.7E-05 30.1 4.6 37 588-624 4-40 (53)
315 PF10602 RPN7: 26S proteasome 90.2 7.6 0.00016 33.7 12.0 96 484-579 38-139 (177)
316 PF13374 TPR_10: Tetratricopep 90.1 0.64 1.4E-05 28.6 4.1 26 587-612 4-29 (42)
317 KOG1550 Extracellular protein 90.0 9.5 0.00021 40.4 14.8 149 494-651 261-429 (552)
318 PRK15180 Vi polysaccharide bio 90.0 2.4 5.2E-05 41.7 9.3 142 489-634 296-442 (831)
319 COG3629 DnrI DNA-binding trans 89.9 2.1 4.6E-05 39.8 8.6 77 77-155 155-236 (280)
320 PF11207 DUF2989: Protein of u 89.8 1.6 3.4E-05 38.0 7.2 71 569-639 122-198 (203)
321 PF04097 Nic96: Nup93/Nic96; 89.6 33 0.00071 36.9 20.3 88 386-478 265-356 (613)
322 PF13431 TPR_17: Tetratricopep 89.5 0.57 1.2E-05 27.4 3.1 32 134-166 2-33 (34)
323 PF10602 RPN7: 26S proteasome 89.4 3.3 7.1E-05 36.0 9.1 90 555-644 38-138 (177)
324 KOG0545 Aryl-hydrocarbon recep 89.4 2.5 5.4E-05 37.7 8.1 56 593-648 238-293 (329)
325 PF09986 DUF2225: Uncharacteri 89.2 2 4.4E-05 38.5 7.9 64 587-650 120-196 (214)
326 KOG2396 HAT (Half-A-TPR) repea 89.1 27 0.00059 35.2 33.9 87 524-613 467-558 (568)
327 KOG4642 Chaperone-dependent E3 89.0 0.9 1.9E-05 40.3 5.2 54 592-645 51-104 (284)
328 PRK09687 putative lyase; Provi 88.9 21 0.00046 33.8 24.9 25 591-616 241-265 (280)
329 PF14561 TPR_20: Tetratricopep 88.5 1 2.2E-05 33.8 4.6 61 584-644 21-84 (90)
330 COG4649 Uncharacterized protei 88.4 14 0.00031 31.2 13.5 53 494-546 144-196 (221)
331 PF13374 TPR_10: Tetratricopep 88.2 0.72 1.6E-05 28.3 3.3 29 620-648 3-31 (42)
332 COG4455 ImpE Protein of avirul 88.1 1.1 2.3E-05 39.2 5.0 64 556-619 4-69 (273)
333 smart00028 TPR Tetratricopepti 87.5 1.1 2.3E-05 25.1 3.6 26 621-646 3-28 (34)
334 TIGR03504 FimV_Cterm FimV C-te 87.0 1.1 2.3E-05 28.1 3.3 27 623-649 3-29 (44)
335 PRK12798 chemotaxis protein; R 86.9 34 0.00073 33.8 23.4 186 462-650 125-326 (421)
336 cd00923 Cyt_c_Oxidase_Va Cytoc 86.9 3.7 8E-05 30.7 6.4 54 572-625 29-82 (103)
337 TIGR02508 type_III_yscG type I 86.7 12 0.00025 28.3 9.5 88 125-216 19-106 (115)
338 PRK09687 putative lyase; Provi 86.4 30 0.00065 32.8 27.3 146 143-290 34-185 (280)
339 PF02284 COX5A: Cytochrome c o 86.4 4.4 9.5E-05 30.7 6.7 55 572-626 32-86 (108)
340 KOG1308 Hsp70-interacting prot 85.8 0.61 1.3E-05 43.7 2.6 118 527-647 124-243 (377)
341 KOG4570 Uncharacterized conser 85.5 10 0.00023 35.4 10.0 101 443-545 58-163 (418)
342 PF06552 TOM20_plant: Plant sp 85.4 1.9 4.2E-05 36.6 5.0 68 498-566 7-82 (186)
343 cd00923 Cyt_c_Oxidase_Va Cytoc 85.3 6.9 0.00015 29.3 7.2 60 499-560 24-83 (103)
344 TIGR02561 HrpB1_HrpK type III 85.1 20 0.00044 29.6 12.4 52 427-479 23-74 (153)
345 PF02284 COX5A: Cytochrome c o 84.9 7.1 0.00015 29.6 7.2 60 500-561 28-87 (108)
346 COG5159 RPN6 26S proteasome re 84.9 28 0.00061 32.2 12.3 156 489-644 10-190 (421)
347 COG1747 Uncharacterized N-term 84.8 48 0.001 33.6 21.7 48 532-579 184-231 (711)
348 smart00028 TPR Tetratricopepti 84.7 1.4 3.1E-05 24.5 3.2 31 587-617 3-33 (34)
349 KOG0276 Vesicle coat complex C 84.2 19 0.00041 37.1 11.9 29 517-545 666-694 (794)
350 KOG0376 Serine-threonine phosp 84.0 0.98 2.1E-05 44.5 3.2 103 523-628 10-115 (476)
351 PRK15180 Vi polysaccharide bio 83.7 50 0.0011 33.0 25.2 119 123-244 301-423 (831)
352 KOG0890 Protein kinase of the 83.6 1.2E+02 0.0027 37.4 28.9 276 352-650 1424-1733(2382)
353 KOG0276 Vesicle coat complex C 83.4 21 0.00045 36.8 11.8 44 461-508 649-692 (794)
354 KOG3364 Membrane protein invol 82.5 5.6 0.00012 32.0 6.2 71 551-621 30-107 (149)
355 PF07035 Mic1: Colon cancer-as 82.4 30 0.00065 29.5 16.4 37 234-270 16-52 (167)
356 KOG0551 Hsp90 co-chaperone CNS 82.3 5.6 0.00012 37.4 7.0 89 556-644 84-178 (390)
357 PF09477 Type_III_YscG: Bacter 81.8 21 0.00046 27.4 8.8 81 124-207 19-99 (116)
358 PF00637 Clathrin: Region in C 81.6 1.4 3.1E-05 36.7 3.0 84 319-405 13-96 (143)
359 KOG4570 Uncharacterized conser 81.4 13 0.00028 34.8 9.0 100 141-241 59-164 (418)
360 KOG2066 Vacuolar assembly/sort 81.2 84 0.0018 33.8 25.7 32 350-381 507-538 (846)
361 KOG1498 26S proteasome regulat 81.2 57 0.0012 31.9 14.2 97 557-653 135-246 (439)
362 KOG0890 Protein kinase of the 81.2 1.5E+02 0.0033 36.7 35.0 105 518-626 1671-1796(2382)
363 PF13762 MNE1: Mitochondrial s 80.6 26 0.00056 29.0 9.6 78 148-225 41-128 (145)
364 PRK10941 hypothetical protein; 80.5 10 0.00022 35.5 8.3 69 557-625 185-255 (269)
365 COG4976 Predicted methyltransf 79.1 3.5 7.6E-05 36.5 4.4 56 564-619 6-63 (287)
366 COG2909 MalT ATP-dependent tra 79.0 1.1E+02 0.0023 33.7 25.0 217 425-644 426-684 (894)
367 PF12862 Apc5: Anaphase-promot 78.9 5.4 0.00012 30.3 5.1 53 595-647 8-69 (94)
368 PF04097 Nic96: Nup93/Nic96; 78.9 1E+02 0.0022 33.3 24.5 21 563-583 515-535 (613)
369 COG0790 FOG: TPR repeat, SEL1 78.7 63 0.0014 30.9 19.2 77 571-650 173-268 (292)
370 PRK11619 lytic murein transgly 78.0 1.1E+02 0.0023 33.2 39.0 80 560-639 414-496 (644)
371 PF11207 DUF2989: Protein of u 77.3 29 0.00063 30.5 9.5 73 499-572 123-197 (203)
372 KOG4507 Uncharacterized conser 76.4 8.2 0.00018 39.3 6.6 101 528-629 618-720 (886)
373 smart00386 HAT HAT (Half-A-TPR 76.2 4.5 9.8E-05 22.8 3.2 30 599-628 1-30 (33)
374 TIGR02508 type_III_yscG type I 76.1 32 0.00069 26.1 8.7 86 227-316 20-105 (115)
375 PF09670 Cas_Cas02710: CRISPR- 74.8 55 0.0012 32.7 12.2 52 493-545 142-197 (379)
376 PF04190 DUF410: Protein of un 73.1 82 0.0018 29.5 16.8 106 259-375 2-117 (260)
377 KOG4279 Serine/threonine prote 72.8 73 0.0016 34.0 12.3 46 562-617 353-398 (1226)
378 KOG2063 Vacuolar assembly/sort 72.6 1.7E+02 0.0036 32.8 19.2 376 215-629 310-742 (877)
379 PF04910 Tcf25: Transcriptiona 72.4 1.1E+02 0.0023 30.4 14.0 56 592-647 110-167 (360)
380 TIGR03504 FimV_Cterm FimV C-te 72.1 7 0.00015 24.5 3.4 28 17-44 3-30 (44)
381 PF14561 TPR_20: Tetratricopep 71.4 38 0.00083 25.4 7.8 43 606-648 9-51 (90)
382 KOG4507 Uncharacterized conser 71.0 19 0.00041 36.9 7.7 132 514-650 568-707 (886)
383 PF13762 MNE1: Mitochondrial s 70.9 60 0.0013 26.9 9.6 77 250-326 42-128 (145)
384 KOG3824 Huntingtin interacting 69.7 8.7 0.00019 35.7 4.7 46 597-642 128-173 (472)
385 KOG0376 Serine-threonine phosp 69.4 9.2 0.0002 38.1 5.2 105 489-597 11-117 (476)
386 PF07163 Pex26: Pex26 protein; 69.3 65 0.0014 30.0 10.0 87 386-472 90-181 (309)
387 KOG1308 Hsp70-interacting prot 69.3 5.5 0.00012 37.7 3.5 87 565-651 126-214 (377)
388 PF14863 Alkyl_sulf_dimr: Alky 69.1 18 0.00038 29.9 6.0 65 569-636 57-121 (141)
389 PF14853 Fis1_TPR_C: Fis1 C-te 68.9 12 0.00026 24.7 4.1 33 14-46 2-34 (53)
390 PF10579 Rapsyn_N: Rapsyn N-te 68.5 14 0.00031 26.5 4.6 45 597-641 18-65 (80)
391 KOG2471 TPR repeat-containing 68.5 1.4E+02 0.0031 30.3 15.0 46 587-632 337-382 (696)
392 COG4455 ImpE Protein of avirul 68.4 89 0.0019 27.9 12.3 127 484-619 3-139 (273)
393 KOG4077 Cytochrome c oxidase, 67.6 26 0.00056 27.9 6.2 55 571-625 70-124 (149)
394 PF10579 Rapsyn_N: Rapsyn N-te 67.4 15 0.00032 26.5 4.5 43 496-538 20-64 (80)
395 KOG2066 Vacuolar assembly/sort 66.6 2E+02 0.0043 31.3 26.5 75 248-325 393-467 (846)
396 KOG3364 Membrane protein invol 66.5 48 0.001 27.0 7.6 68 582-649 29-101 (149)
397 KOG0686 COP9 signalosome, subu 66.0 1.4E+02 0.0031 29.5 13.2 61 450-510 151-215 (466)
398 PF10366 Vps39_1: Vacuolar sor 65.2 38 0.00082 26.5 7.0 26 382-407 42-67 (108)
399 PRK13800 putative oxidoreducta 64.0 2.7E+02 0.0058 31.9 25.3 184 447-647 696-880 (897)
400 KOG2422 Uncharacterized conser 63.6 1.1E+02 0.0024 31.7 11.2 49 494-543 250-310 (665)
401 COG2912 Uncharacterized conser 63.5 25 0.00054 32.5 6.4 59 590-648 186-244 (269)
402 PF07163 Pex26: Pex26 protein; 62.9 48 0.001 30.8 7.9 87 82-169 90-181 (309)
403 PF07720 TPR_3: Tetratricopept 62.4 26 0.00056 20.8 4.3 17 591-607 7-23 (36)
404 COG4976 Predicted methyltransf 62.1 13 0.00029 33.1 4.2 56 527-584 5-61 (287)
405 COG3947 Response regulator con 61.6 43 0.00092 31.3 7.4 58 453-510 283-341 (361)
406 PF10255 Paf67: RNA polymerase 61.3 58 0.0012 32.5 8.9 57 590-646 127-191 (404)
407 COG5191 Uncharacterized conser 61.2 15 0.00032 34.4 4.5 78 549-626 103-183 (435)
408 PF10516 SHNi-TPR: SHNi-TPR; 61.0 16 0.00036 22.0 3.3 28 620-647 2-29 (38)
409 PF08311 Mad3_BUB1_I: Mad3/BUB 60.3 54 0.0012 26.5 7.3 42 603-644 81-124 (126)
410 PF12968 DUF3856: Domain of Un 60.2 85 0.0018 24.9 10.8 24 622-645 103-126 (144)
411 PF04910 Tcf25: Transcriptiona 59.4 1.9E+02 0.0041 28.7 18.3 57 489-545 110-167 (360)
412 KOG4077 Cytochrome c oxidase, 59.3 63 0.0014 25.8 6.9 47 501-547 68-114 (149)
413 PF09477 Type_III_YscG: Bacter 59.3 82 0.0018 24.4 8.7 79 227-308 21-99 (116)
414 KOG3807 Predicted membrane pro 58.6 1.7E+02 0.0037 27.9 11.5 23 602-624 379-401 (556)
415 KOG2300 Uncharacterized conser 58.4 2.2E+02 0.0047 29.0 34.0 386 14-408 8-474 (629)
416 KOG1464 COP9 signalosome, subu 58.3 1.5E+02 0.0034 27.3 17.9 183 392-574 40-252 (440)
417 PF07575 Nucleopor_Nup85: Nup8 57.7 2.7E+02 0.0058 29.8 16.8 62 413-476 404-465 (566)
418 PF11846 DUF3366: Domain of un 57.3 43 0.00092 29.6 6.9 37 580-616 139-175 (193)
419 KOG0530 Protein farnesyltransf 56.8 1.7E+02 0.0036 27.2 12.0 73 584-656 111-184 (318)
420 KOG3783 Uncharacterized conser 56.7 2.5E+02 0.0053 29.1 18.6 68 582-649 444-521 (546)
421 PF13929 mRNA_stabil: mRNA sta 56.0 1.8E+02 0.004 27.4 20.9 111 293-403 143-262 (292)
422 KOG4642 Chaperone-dependent E3 55.7 1.6E+02 0.0035 26.8 9.7 120 458-579 19-143 (284)
423 PF11846 DUF3366: Domain of un 55.1 49 0.0011 29.3 6.9 32 514-545 141-172 (193)
424 PRK13342 recombination factor 55.0 2.5E+02 0.0053 28.6 15.6 46 382-427 230-278 (413)
425 cd08819 CARD_MDA5_2 Caspase ac 54.8 86 0.0019 23.3 6.6 65 130-196 21-85 (88)
426 cd00280 TRFH Telomeric Repeat 53.5 43 0.00093 28.8 5.7 25 594-619 120-144 (200)
427 PF13929 mRNA_stabil: mRNA sta 53.3 2E+02 0.0044 27.1 19.3 60 243-302 198-262 (292)
428 PF10345 Cohesin_load: Cohesin 51.5 3.5E+02 0.0075 29.3 38.4 29 76-104 60-89 (608)
429 KOG2581 26S proteasome regulat 51.3 1.1E+02 0.0024 30.2 8.6 137 482-618 124-280 (493)
430 KOG3824 Huntingtin interacting 50.6 26 0.00056 32.7 4.3 57 565-621 128-186 (472)
431 PRK13800 putative oxidoreducta 50.0 4.5E+02 0.0098 30.2 26.3 26 268-293 625-650 (897)
432 PRK10564 maltose regulon perip 49.2 33 0.00072 32.2 4.9 41 179-219 259-299 (303)
433 PF11768 DUF3312: Protein of u 49.0 2.6E+02 0.0056 29.2 11.2 43 560-605 501-543 (545)
434 COG2909 MalT ATP-dependent tra 48.9 4.2E+02 0.0091 29.5 29.4 190 390-579 469-685 (894)
435 PF10366 Vps39_1: Vacuolar sor 48.6 1.1E+02 0.0024 23.9 7.0 27 280-306 41-67 (108)
436 PF07575 Nucleopor_Nup85: Nup8 48.4 3.7E+02 0.0081 28.8 16.8 27 75-102 149-175 (566)
437 PF11848 DUF3368: Domain of un 47.8 73 0.0016 20.4 5.3 33 188-220 13-45 (48)
438 PF02184 HAT: HAT (Half-A-TPR) 47.7 40 0.00086 19.4 3.2 26 600-626 2-27 (32)
439 PF00244 14-3-3: 14-3-3 protei 47.2 1.8E+02 0.004 26.7 9.4 47 602-648 143-198 (236)
440 PF11663 Toxin_YhaV: Toxin wit 46.7 26 0.00056 28.3 3.2 32 188-221 106-137 (140)
441 PRK10564 maltose regulon perip 45.9 38 0.00082 31.9 4.7 40 280-319 259-298 (303)
442 PF14689 SPOB_a: Sensor_kinase 45.5 59 0.0013 22.3 4.5 30 516-545 22-51 (62)
443 cd08819 CARD_MDA5_2 Caspase ac 45.2 1.3E+02 0.0027 22.4 6.6 38 360-398 48-85 (88)
444 PF11848 DUF3368: Domain of un 45.1 81 0.0018 20.2 5.2 34 389-422 12-45 (48)
445 cd00280 TRFH Telomeric Repeat 43.6 1.4E+02 0.0031 25.9 7.2 18 562-579 120-137 (200)
446 PHA02875 ankyrin repeat protei 43.4 3.7E+02 0.008 27.2 13.4 211 288-518 9-231 (413)
447 smart00777 Mad3_BUB1_I Mad3/BU 43.2 1.6E+02 0.0034 23.9 7.2 40 604-643 82-123 (125)
448 TIGR02270 conserved hypothetic 42.3 3.8E+02 0.0083 27.2 24.1 231 82-337 45-276 (410)
449 PHA02875 ankyrin repeat protei 42.3 3.8E+02 0.0083 27.1 17.8 147 255-414 73-230 (413)
450 PF06957 COPI_C: Coatomer (COP 42.2 1.7E+02 0.0037 29.5 8.8 42 576-617 289-332 (422)
451 KOG2908 26S proteasome regulat 41.9 1.6E+02 0.0035 28.3 8.0 84 81-164 81-175 (380)
452 PF04762 IKI3: IKI3 family; I 41.8 6E+02 0.013 29.3 16.1 112 519-645 814-927 (928)
453 PF09454 Vps23_core: Vps23 cor 41.7 93 0.002 21.6 5.0 51 108-159 5-55 (65)
454 PF04781 DUF627: Protein of un 41.3 1.6E+02 0.0034 23.1 6.7 97 525-644 4-103 (111)
455 PF04034 DUF367: Domain of unk 41.0 1.9E+02 0.0041 23.3 7.5 61 552-612 65-126 (127)
456 PF11838 ERAP1_C: ERAP1-like C 40.7 3.5E+02 0.0075 26.2 16.8 56 519-578 171-226 (324)
457 KOG0292 Vesicle coat complex C 40.7 1.9E+02 0.0042 31.8 9.2 130 493-649 654-783 (1202)
458 PF08424 NRDE-2: NRDE-2, neces 40.7 3.5E+02 0.0077 26.3 14.8 141 474-617 11-186 (321)
459 KOG2062 26S proteasome regulat 40.6 5.2E+02 0.011 28.2 37.5 120 459-583 511-636 (929)
460 PF12862 Apc5: Anaphase-promot 40.3 1.6E+02 0.0034 22.2 8.1 53 493-545 9-69 (94)
461 PF11663 Toxin_YhaV: Toxin wit 39.9 43 0.00093 27.1 3.5 34 85-121 105-138 (140)
462 COG5191 Uncharacterized conser 39.8 77 0.0017 29.9 5.6 69 581-649 103-172 (435)
463 KOG2297 Predicted translation 39.8 2.9E+02 0.0063 26.3 9.1 19 410-428 219-237 (412)
464 COG4941 Predicted RNA polymera 38.7 2.1E+02 0.0046 27.6 8.2 118 498-619 272-399 (415)
465 PF07064 RIC1: RIC1; InterPro 38.7 3.3E+02 0.0072 25.4 14.7 59 559-617 185-252 (258)
466 PF14669 Asp_Glu_race_2: Putat 37.9 2.8E+02 0.0061 24.3 14.1 65 370-444 98-162 (233)
467 KOG2422 Uncharacterized conser 37.8 5.1E+02 0.011 27.3 17.8 154 489-647 349-515 (665)
468 PF11817 Foie-gras_1: Foie gra 37.6 1.2E+02 0.0026 28.1 6.8 22 523-544 184-205 (247)
469 COG5108 RPO41 Mitochondrial DN 37.5 2E+02 0.0043 30.5 8.5 24 217-240 33-56 (1117)
470 KOG1811 Predicted Zn2+-binding 37.4 2.7E+02 0.0058 29.2 9.3 87 558-645 561-650 (1141)
471 PF13934 ELYS: Nuclear pore co 36.9 3.3E+02 0.0071 24.8 13.1 70 523-596 114-183 (226)
472 PF14689 SPOB_a: Sensor_kinase 36.8 21 0.00046 24.4 1.3 25 486-510 27-51 (62)
473 KOG2908 26S proteasome regulat 36.7 1.6E+02 0.0035 28.4 7.2 16 426-441 87-102 (380)
474 KOG1524 WD40 repeat-containing 35.9 1.9E+02 0.0041 29.7 7.9 57 516-579 572-628 (737)
475 COG4941 Predicted RNA polymera 35.5 4.2E+02 0.0092 25.7 11.3 115 462-579 269-391 (415)
476 COG0790 FOG: TPR repeat, SEL1 35.5 3.9E+02 0.0085 25.3 18.0 80 497-580 128-218 (292)
477 KOG4279 Serine/threonine prote 34.5 2E+02 0.0044 31.0 8.1 21 624-644 349-369 (1226)
478 KOG0687 26S proteasome regulat 34.1 4.4E+02 0.0095 25.5 12.1 23 556-578 107-129 (393)
479 PF04190 DUF410: Protein of un 33.9 4E+02 0.0087 24.9 17.7 104 360-474 2-115 (260)
480 KOG0292 Vesicle coat complex C 33.6 60 0.0013 35.4 4.4 47 563-612 653-699 (1202)
481 PF12583 TPPII_N: Tripeptidyl 33.1 1.4E+02 0.003 24.1 5.3 38 594-631 85-122 (139)
482 PRK12356 glutaminase; Reviewed 33.0 4.5E+02 0.0098 25.4 9.7 24 95-122 86-109 (319)
483 COG0735 Fur Fe2+/Zn2+ uptake r 32.8 2E+02 0.0044 23.9 6.7 63 198-261 7-69 (145)
484 KOG2581 26S proteasome regulat 32.8 5.2E+02 0.011 25.9 14.6 174 461-647 138-345 (493)
485 PF12069 DUF3549: Protein of u 32.7 4.8E+02 0.01 25.5 12.4 86 455-545 172-258 (340)
486 PRK14700 recombination factor 32.5 4.5E+02 0.0098 25.1 10.2 64 382-445 126-197 (300)
487 COG5159 RPN6 26S proteasome re 32.4 4.4E+02 0.0094 24.9 18.2 32 183-214 9-40 (421)
488 PF00244 14-3-3: 14-3-3 protei 32.3 4E+02 0.0087 24.5 12.0 57 385-441 7-64 (236)
489 KOG4814 Uncharacterized conser 31.6 2.3E+02 0.0049 30.0 7.8 86 527-614 364-457 (872)
490 PRK09857 putative transposase; 31.4 2.9E+02 0.0062 26.5 8.4 63 589-651 210-272 (292)
491 KOG2758 Translation initiation 31.2 4.8E+02 0.01 25.1 9.7 69 580-648 123-196 (432)
492 PF08424 NRDE-2: NRDE-2, neces 31.0 5.1E+02 0.011 25.2 17.9 133 446-579 16-180 (321)
493 PF11768 DUF3312: Protein of u 30.9 2.7E+02 0.0058 29.0 8.2 56 150-205 412-472 (545)
494 KOG2034 Vacuolar sorting prote 30.5 8.1E+02 0.018 27.4 31.2 376 52-474 366-746 (911)
495 cd08326 CARD_CASP9 Caspase act 30.0 2.3E+02 0.005 20.9 6.0 36 259-294 42-77 (84)
496 cd02680 MIT_calpain7_2 MIT: do 29.8 72 0.0016 22.9 3.1 17 597-613 18-34 (75)
497 KOG2471 TPR repeat-containing 29.8 6.4E+02 0.014 26.0 12.8 76 589-664 210-288 (696)
498 PF08311 Mad3_BUB1_I: Mad3/BUB 29.8 3E+02 0.0065 22.2 10.1 44 535-578 81-124 (126)
499 TIGR02414 pepN_proteo aminopep 29.7 8.9E+02 0.019 27.6 14.7 148 486-641 676-836 (863)
500 KOG4814 Uncharacterized conser 29.7 4.4E+02 0.0095 28.1 9.4 94 483-580 356-455 (872)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.6e-98 Score=820.24 Aligned_cols=654 Identities=38% Similarity=0.669 Sum_probs=639.8
Q ss_pred CCCCChhHHHHHHHHhhccCChhhHhHHHHHHHHhCCCc-hhhhh---hHhhhcCChhhHHHhhcccCCCCcchHHHHHH
Q 005966 8 TLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRS---SLVRAYGHVSNVRILFDEMSERSSFLYNTVMK 83 (667)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 83 (667)
+++++..++..+++.|...+.+..|.+++..+++.++.. ..+.+ ..|.++|+++.|.++|++|++||.++||.+|.
T Consensus 81 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~ 160 (857)
T PLN03077 81 RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVG 160 (857)
T ss_pred CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHH
Confidence 467788889999999999999999999999999998876 66666 88999999999999999999999999999999
Q ss_pred HHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHH
Q 005966 84 MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163 (667)
Q Consensus 84 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 163 (667)
+|++.|++++|+++|++|.+. |+.||..||+.++++|+..+++..+.+++..+.+.|+.||..++|.||.+|++.|+++
T Consensus 161 ~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 239 (857)
T PLN03077 161 GYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV 239 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHH
Confidence 999999999999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCC
Q 005966 164 AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRL 243 (667)
Q Consensus 164 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 243 (667)
+|.++|++|+++|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+
T Consensus 240 ~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHh
Q 005966 244 GKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSAC 323 (667)
Q Consensus 244 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 323 (667)
.||..+|+.|+.+|+++|++++|.++|++|.+||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHH
Q 005966 324 SSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFR 403 (667)
Q Consensus 324 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 403 (667)
++.|+++.+.++++.+.+.|+.++..++++|+++|+++|++++|.++|++|.++|.++|+.+|.+|++.|+.++|+++|+
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcc
Q 005966 404 QMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV 483 (667)
Q Consensus 404 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 483 (667)
+|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ . ||..
T Consensus 480 ~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~--~d~~ 555 (857)
T PLN03077 480 QMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E--KDVV 555 (857)
T ss_pred HHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-C--CChh
Confidence 9986 6999999999999999999999999999999999999999999999999999999999999999999 4 9999
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHH
Q 005966 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563 (667)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (667)
+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+..++.|+..+|++++++|
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997689999999999999999
Q ss_pred hhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHH
Q 005966 564 GRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643 (667)
Q Consensus 564 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 643 (667)
++.|++++|.+++++|+.+||..+|.+|+.+|..+|+.+.|+...+++++++|+++..|..|+++|...|+|++|.++++
T Consensus 636 ~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 636 GRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRK 715 (857)
T ss_pred HhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCccCCCeeEEEeCCEec
Q 005966 644 VMDEKGLRKAPAHSLIEVRNILT 666 (667)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~ 666 (667)
.|+++|++|+||+|||+|+++++
T Consensus 716 ~M~~~g~~k~~g~s~ie~~~~~~ 738 (857)
T PLN03077 716 TMRENGLTVDPGCSWVEVKGKVH 738 (857)
T ss_pred HHHHcCCCCCCCccEEEECCEEE
Confidence 99999999999999999999875
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.5e-79 Score=669.51 Aligned_cols=574 Identities=31% Similarity=0.515 Sum_probs=524.0
Q ss_pred CCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHH
Q 005966 71 SERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGN 150 (667)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 150 (667)
..++..++|.++.++.+.|++++|+.+|+.|.+. |++|+..+|..++.+|.+.+....|.+++..+.+.+..++...+|
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 3567788999999999999999999999999998 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHH
Q 005966 151 CLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEM 230 (667)
Q Consensus 151 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 230 (667)
.++.+|++.|+++.|.++|++|+++|+.+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 005966 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310 (667)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 310 (667)
+.+++..+.+.|+.||..+++.|+.+|+++|++++|.++|++|.++|..+||++|.+|++.|++++|+++|.+|.+.|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHH
Q 005966 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCV 390 (667)
Q Consensus 311 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 390 (667)
||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|++++.+|+++|++++|.++|++|..+|..+|+.+|.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHH
Q 005966 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470 (667)
Q Consensus 391 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 470 (667)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+++|+++|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC
Q 005966 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTC 550 (667)
Q Consensus 471 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 550 (667)
+|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+.+.+.+++..+.+ .|+.
T Consensus 446 vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~ 521 (857)
T PLN03077 446 VFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIG 521 (857)
T ss_pred HHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCC
Confidence 9999988 8999999999999999999999999999986 5899999999999999999988888888888877 6776
Q ss_pred CchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc--CCCCCchHHHHHHH
Q 005966 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL--EPENPGNYVLLSKL 628 (667)
Q Consensus 551 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~ 628 (667)
++..++++|+++|+++|++++|.++|+++ .||..+|+.++.+|.+.|+.++|.++|+++.+. .|+ ...|..+..+
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a 598 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCA 598 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHH
Confidence 66666666666666666666666666665 556666666666666666666666666665543 233 4555555566
Q ss_pred HhhcCCchHHHHHHHHhh-hCCCcc
Q 005966 629 YSAVRRWKDAENVRDVMD-EKGLRK 652 (667)
Q Consensus 629 ~~~~g~~~~A~~~~~~~~-~~~~~~ 652 (667)
|.+.|++++|.++|++|. +.|+.+
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCC
Confidence 666666666666666665 445443
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-74 Score=618.92 Aligned_cols=491 Identities=36% Similarity=0.600 Sum_probs=481.9
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHH
Q 005966 174 EHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG-VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNA 252 (667)
Q Consensus 174 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 252 (667)
..+..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3467799999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHH
Q 005966 253 LVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRG 332 (667)
Q Consensus 253 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 332 (667)
++.+|++.|++++|.++|++|.+||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||..++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 005966 333 RSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP 412 (667)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 412 (667)
.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.|.++|+++||.+|.+|++.|+.++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHH
Q 005966 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGY 492 (667)
Q Consensus 413 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 492 (667)
|..||++++.+|++.|+++.|.+++..|.+.|++|+..+++.|+++|+++|++++|.++|++|.+ ||..+||+||.+|
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y 401 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KNLISWNALIAGY 401 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988 9999999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHH
Q 005966 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572 (667)
Q Consensus 493 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 572 (667)
++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+..+..|+..+|++++++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998789999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCCcc
Q 005966 573 YDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652 (667)
Q Consensus 573 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 652 (667)
.+++++|+..|+..+|+.++.+|...|+++.|..++++++++.|+++..|..|+++|.+.|+|++|.++++.|.++|+++
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEeCCEec
Q 005966 653 APAHSLIEVRNILT 666 (667)
Q Consensus 653 ~~~~~~~~~~~~~~ 666 (667)
.||+|||+++++++
T Consensus 562 ~~g~s~i~~~~~~~ 575 (697)
T PLN03081 562 HPACTWIEVKKQDH 575 (697)
T ss_pred CCCeeEEEECCeEE
Confidence 99999999998875
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.3e-69 Score=574.55 Aligned_cols=475 Identities=25% Similarity=0.404 Sum_probs=460.1
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHH
Q 005966 72 ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNC 151 (667)
Q Consensus 72 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 151 (667)
.++..+|+.+|.++.+.|++++|+++|+.|...++..||..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 34677999999999999999999999999998756889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHH
Q 005966 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231 (667)
Q Consensus 152 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 231 (667)
++.+|++.|++++|.++|++|++||.++||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 005966 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311 (667)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 311 (667)
.+++..+.+.|+.+|..+++.|+++|+++|++++|.++|++|.++|+++||++|.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHh
Q 005966 312 NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVH 391 (667)
Q Consensus 312 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 391 (667)
|..||+.++.+|++.|.++.|.+++..+.+.|+.++..++++|+++|+++|++++|.++|++|.++|..+||.||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHhcCCHHHHHH
Q 005966 392 NGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLIDIYSKCGSLESAHK 470 (667)
Q Consensus 392 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 470 (667)
.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999975 6999999999999999999999999999
Q ss_pred HHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 005966 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP-NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549 (667)
Q Consensus 471 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 549 (667)
+++++... |+..+|++++.+|...|+++.|..+++++.+. .| +..+|..+++.|++.|++++|.++++.|.+ .|+
T Consensus 484 ~~~~~~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~ 559 (697)
T PLN03081 484 MIRRAPFK-PTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGL 559 (697)
T ss_pred HHHHCCCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCC
Confidence 99998754 99999999999999999999999999999764 45 467999999999999999999999999998 555
Q ss_pred C
Q 005966 550 C 550 (667)
Q Consensus 550 ~ 550 (667)
.
T Consensus 560 ~ 560 (697)
T PLN03081 560 S 560 (697)
T ss_pred c
Confidence 4
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-67 Score=566.51 Aligned_cols=517 Identities=17% Similarity=0.218 Sum_probs=469.5
Q ss_pred hHhhhcCChhhHHHhhcccCCCCc-----chHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccc
Q 005966 52 SLVRAYGHVSNVRILFDEMSERSS-----FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAW 126 (667)
Q Consensus 52 ~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 126 (667)
..+.+.|++++|.++|++|+.++. ..++.++.+|.+.|..++|+.+|+.|. .||..+|+.++.+|++.|+
T Consensus 378 ~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NPTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHhCcC
Confidence 556677999999999999987654 456677888999999999999999985 3999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccC----CCChhhHHHHHHHHHHcCChhHHHHHHHH
Q 005966 127 RKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW----EHSVVSWNTLISGYFKNAYAKEALVVFDW 202 (667)
Q Consensus 127 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 202 (667)
++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|+++|++
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999996 57999999999999999999999999999
Q ss_pred HHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHh--cCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----C
Q 005966 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG--GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE----R 276 (667)
Q Consensus 203 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~ 276 (667)
|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+ .|+.||..+|++++.+|++.|++++|.++|+.|.+ |
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999986 67899999999999999999999999999999986 6
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHH
Q 005966 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALID 356 (667)
Q Consensus 277 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 356 (667)
+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|+.++.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhccC----CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHH
Q 005966 357 MYAKCNLVKLSFQVFARTS----KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432 (667)
Q Consensus 357 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 432 (667)
+|+++|++++|.++|++|. .++..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999985 688888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 005966 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512 (667)
Q Consensus 433 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 512 (667)
|.++++.|.+.|+.|+..+|++++.++.+ ++++|.++.+.+..-.+ .......+..+.|+.+|++|.+.|
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~--------g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDS--------GRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhc--------cccccccchHHHHHHHHHHHHHCC
Confidence 99999999999999999999999976542 45665555443332110 001111223466999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC---CCCCCHH
Q 005966 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM---PLKPTHA 586 (667)
Q Consensus 513 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~ 586 (667)
+.||..||+.++.++++.+..+.+..+++.|.. .+..|+..+|+++++++++. .++|+.++++| ++.|+..
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999888899999999999988876 57779999999999998432 47899999999 4666653
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.5e-66 Score=554.31 Aligned_cols=533 Identities=16% Similarity=0.213 Sum_probs=417.5
Q ss_pred CCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHH
Q 005966 107 YNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLIS 185 (667)
Q Consensus 107 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 185 (667)
..++...|..++..+++.|++++|.++|++|.+.|+ +++..+++.++.+|.+.|..++|..+|+.|..||..+|+.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456777899999999999999999999999999985 5788888899999999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHH
Q 005966 186 GYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNE 265 (667)
Q Consensus 186 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 265 (667)
+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCC----CChhHHHHHHHHHHhCCChHHHHHHHHHHHh--cCCCCChhhHHHHHHHhhcccchHHHHHHHHHH
Q 005966 266 ARLVFDRMSE----RDVVTWTSMINGYALNGDVRNALGLFQLMQF--EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWT 339 (667)
Q Consensus 266 A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 339 (667)
|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..||+.+|.+|++.|+++.|.++++.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999864 8899999999999999999999999999976 578899999999999999999999999999999
Q ss_pred HHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccC----CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 005966 340 IKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS----KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA 415 (667)
Q Consensus 340 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 415 (667)
.+.++.|+..+|+.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|.+++++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 999988888888888877777777777777776665 3455556666666666666666777776666666666666
Q ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--CCcchHHHHHHHHH
Q 005966 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD--KDIVVWSVIIAGYG 493 (667)
Q Consensus 416 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 493 (667)
+|++++.+|++.|++++|.++|+.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|...+ ||..+|+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 6777777666666666666666666666666666666666666666666666666666665554 66666666666666
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHH
Q 005966 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573 (667)
Q Consensus 494 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 573 (667)
+.|++++|.+++++|.+.|+.||..+|+.++..|. +++++|..+.+.+.. .. + .......+..++|+
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~-f~--~--------g~~~~~n~w~~~Al 832 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS-FD--S--------GRPQIENKWTSWAL 832 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh-hh--c--------cccccccchHHHHH
Confidence 66666666666666666666666666666665443 234444444333322 00 0 00111123346788
Q ss_pred HHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh-ccCCCCCchHHHHHHHHhhcCCc-hHHHHHHHHhhhC
Q 005966 574 DLIRTM---PLKPTHAVWGALLGACVIHGNVELGEVAAKWLF-ELEPENPGNYVLLSKLYSAVRRW-KDAENVRDVMDEK 648 (667)
Q Consensus 574 ~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 648 (667)
.+|++| ++.||..+|+.++.+++..+..+.+..+++.+. .-.+.+...|..|++.+ |++ ++|..++++|.+.
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~ 909 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASL 909 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHc
Confidence 888888 588999999999877777888888887777653 23344567788888876 333 6899999999999
Q ss_pred CCccCCC
Q 005966 649 GLRKAPA 655 (667)
Q Consensus 649 ~~~~~~~ 655 (667)
|+.++-.
T Consensus 910 Gi~p~~~ 916 (1060)
T PLN03218 910 GVVPSVS 916 (1060)
T ss_pred CCCCCcc
Confidence 9876643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-39 Score=366.36 Aligned_cols=625 Identities=11% Similarity=0.020 Sum_probs=330.5
Q ss_pred CCChhHHHHHHHHhhccCChhhHhHHHHHHHHhCCCc---hhhhhhHhhhcCChhhHHHhhcccCCCC---cchHHHHHH
Q 005966 10 PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF---THLRSSLVRAYGHVSNVRILFDEMSERS---SFLYNTVMK 83 (667)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~ 83 (667)
|.++.++..++..+...|++++|...++.+++..|.+ .+....++...|++++|...|+.+.+.+ ...+..+..
T Consensus 224 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 303 (899)
T TIGR02917 224 PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGA 303 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 4556666677777777777777777777777666655 1111144555566666666665543221 222333444
Q ss_pred HHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHH
Q 005966 84 MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163 (667)
Q Consensus 84 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 163 (667)
.+...|++++|...|+++.+. .+.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|+++
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 380 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKY--APNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFE 380 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHH
Confidence 455555556666655555544 23333444445555555555555555555555443 334445555555555555555
Q ss_pred HHHHHhcccCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHCC---------------------------------
Q 005966 164 AARKVFDAMWE---HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSG--------------------------------- 207 (667)
Q Consensus 164 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--------------------------------- 207 (667)
+|.+.|+++.+ .+...|..+...+...|++++|++.|+.+.+..
T Consensus 381 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 381 KAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 55555554422 133344444444555555555555555444322
Q ss_pred CCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHH
Q 005966 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE---RDVVTWTSM 284 (667)
Q Consensus 208 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 284 (667)
..++..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.|+++.+ .+..++..+
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 22233444444555555555555555555554432 22333444455555555555555555555432 233444555
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCH
Q 005966 285 INGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLV 364 (667)
Q Consensus 285 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 364 (667)
...+.+.|+.++|...++++...+ +.+...+..+...+...|+++.+...++.+.+.. +.+..++..+...|.+.|++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 555555555555555555554432 1233344445555555555555555555554432 33444555555555555555
Q ss_pred HHHHHHHhccC---CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Q 005966 365 KLSFQVFARTS---KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLI 441 (667)
Q Consensus 365 ~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 441 (667)
++|...|+.+. +.++..+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.+.
T Consensus 618 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 618 NKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555443 2223335555555555555555555555555431 2234455555555555555666655555555
Q ss_pred HhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 005966 442 RYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFT 521 (667)
Q Consensus 442 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 521 (667)
+.. +.+...+..+...+.+.|++++|.+.|+.+....|+..++..++.++.+.|++++|.+.++++.+.. +.+...+.
T Consensus 697 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 774 (899)
T TIGR02917 697 KQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRT 774 (899)
T ss_pred hhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 444 3444555555555566666666666666555544555555555555666666666666666655543 23444555
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005966 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHG 599 (667)
Q Consensus 522 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 599 (667)
.+...|...|++++|...|+++.+ ..+++...+..++..+...|+ ++|++.++++ ...| ++.++..+...+...|
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 555555566666666666666655 233445555555666666665 5566655554 2222 3444555555556666
Q ss_pred CHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 600 NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 600 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|+
T Consensus 852 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.9e-38 Score=358.78 Aligned_cols=627 Identities=14% Similarity=0.057 Sum_probs=445.5
Q ss_pred CCChhHHHHHHHHhhccCChhhHhHHHHHHHHhCCCc-hhhhh--hHhhhcCChhhHHHhhcccCCC---CcchHHHHHH
Q 005966 10 PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRS--SLVRAYGHVSNVRILFDEMSER---SSFLYNTVMK 83 (667)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~--~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~ 83 (667)
|.+..++..+...+...|+++.|...+.+++..+|.. ..... .++...|++++|...|+.+.+. +...+.....
T Consensus 190 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 269 (899)
T TIGR02917 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKAL 269 (899)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 5667888888999999999999999999999999987 22222 8888999999999999987432 3445555566
Q ss_pred HHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHH
Q 005966 84 MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVK 163 (667)
Q Consensus 84 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 163 (667)
.+...|++++|+..|+++.+. .+.+...+..+..++...|++++|...++.+.+.. +.+...+..+...+.+.|+++
T Consensus 270 ~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~ 346 (899)
T TIGR02917 270 VDFQKKNYEDARETLQDALKS--APEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVD 346 (899)
T ss_pred HHHHhcCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHH
Confidence 677899999999999999976 23234455566677889999999999999999886 556778888999999999999
Q ss_pred HHHHHhcccCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-ChHHHHHHHHHcccCcchHHHHHHHHHHH
Q 005966 164 AARKVFDAMWE---HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP-DCASVVSVLPACGYLKEIEMGRMIHELVA 239 (667)
Q Consensus 164 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 239 (667)
+|...++.+.. .+...+..+...+.+.|++++|.++|+++.+. .| +...+..+...+...|+++.|...++.+.
T Consensus 347 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 424 (899)
T TIGR02917 347 EAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLETAA 424 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 99999988744 35678999999999999999999999999874 34 34456666666777778887777777776
Q ss_pred hcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHH-------------
Q 005966 240 GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE---RDVVTWTSMINGYALNGDVRNALGLFQL------------- 303 (667)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~------------- 303 (667)
+.... +......++..+.+.|++++|..+++.+.. .+..+|..+...+...|++++|.+.|++
T Consensus 425 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 503 (899)
T TIGR02917 425 QLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAA 503 (899)
T ss_pred hhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHH
Confidence 65422 222333444445555555555555554432 2333444444444445555555555444
Q ss_pred ---------------------HHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcC
Q 005966 304 ---------------------MQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362 (667)
Q Consensus 304 ---------------------m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 362 (667)
+.+.+ +.+..++..+...+...|+.+++...+..+.+.+ +.+...+..++..|.+.|
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 581 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKG 581 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCC
Confidence 44332 1233344444444445555555555555544433 233344455555566666
Q ss_pred CHHHHHHHHhccC---CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHH
Q 005966 363 LVKLSFQVFARTS---KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY 439 (667)
Q Consensus 363 ~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 439 (667)
++++|..+++.+. +.+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|..+++.
T Consensus 582 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 660 (899)
T TIGR02917 582 QLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKR 660 (899)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666665554 2233346666666666666666666666665432 22344555666666666666666666666
Q ss_pred HHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 005966 440 LIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV 518 (667)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 518 (667)
+.+.. +.+...+..++..+...|++++|.++++.+....| +...+..+...+...|++++|...|+++.+.+ |+..
T Consensus 661 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~ 737 (899)
T TIGR02917 661 ALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQ 737 (899)
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCch
Confidence 66543 34456666666777777777777777776665553 45566777777888888888888888887753 4556
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 005966 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-P-LKPTHAVWGALLGACV 596 (667)
Q Consensus 519 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~ 596 (667)
++..+..++.+.|++++|.+.++.+.+ ..+.+...+..++..|...|++++|.+.|+++ . .++++.++..++..+.
T Consensus 738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 738 NAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL 815 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 677778888888888888888888877 34566778888899999999999999999987 3 3446778899999999
Q ss_pred hcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCCc
Q 005966 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651 (667)
Q Consensus 597 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 651 (667)
..|+ .+|+..++++++..|+++..+..++.+|...|++++|.++++++.+.+..
T Consensus 816 ~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9999 88999999999999999999999999999999999999999999987643
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1e-28 Score=278.32 Aligned_cols=617 Identities=13% Similarity=0.044 Sum_probs=466.2
Q ss_pred ChhHHHHHHHHhhccCChhhHhHHHHHHHHhCCCc-hhhhh--hHhhhcCChhhHHHhhcccCC--CC-cchH-------
Q 005966 12 TTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRS--SLVRAYGHVSNVRILFDEMSE--RS-SFLY------- 78 (667)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~--~~~~~~g~~~~A~~~~~~~~~--~~-~~~~------- 78 (667)
....+..-++.+...++.+.|.+.+.+++...|.+ ..+.. .++...|+.++|.+.+++..+ |+ ...+
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~ 106 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTML 106 (1157)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 45568888888999999999999999999999988 33333 888899999999999998753 32 2222
Q ss_pred ---------HHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCccc-HHHHHHHhccccchHHHHHHHHHHHHhCCCCchHH
Q 005966 79 ---------NTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYT-YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148 (667)
Q Consensus 79 ---------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 148 (667)
..+...+.+.|++++|+..|+.+.+. .+|+... ...........|+.++|...++++.+.. +.+...
T Consensus 107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~--~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~ 183 (1157)
T PRK11447 107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNG--APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGL 183 (1157)
T ss_pred hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccC--CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHH
Confidence 23345688999999999999999975 4444322 1112222335689999999999999986 557788
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcccCCCCh------hhH-----------------HHHHHHHHHcCChhHHHHHHHHHHH
Q 005966 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSV------VSW-----------------NTLISGYFKNAYAKEALVVFDWMLK 205 (667)
Q Consensus 149 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~~-----------------~~li~~~~~~~~~~~A~~~~~~m~~ 205 (667)
+..+...+...|+.++|+..|+++..... ..| ...+..+-.......|...+..+..
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 88999999999999999999998743211 111 1111111112223455555555544
Q ss_pred CCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh---hH
Q 005966 206 SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE--RDV---VT 280 (667)
Q Consensus 206 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~ 280 (667)
....|+... ......+...|++++|...++.+++.. +.+..++..+...+.+.|++++|+..|++..+ |+. ..
T Consensus 264 ~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~ 341 (1157)
T PRK11447 264 QLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341 (1157)
T ss_pred hccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH
Confidence 333333222 122345667899999999999999875 34678899999999999999999999998875 322 11
Q ss_pred HH------------HHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCc
Q 005966 281 WT------------SMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348 (667)
Q Consensus 281 ~~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 348 (667)
|. .....+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+.
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~ 419 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNT 419 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 21 12346778999999999999998853 2344566677788999999999999999998865 3445
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhccCCCC------------cccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHH
Q 005966 349 IVETALIDMYAKCNLVKLSFQVFARTSKKK------------TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP-NDA 415 (667)
Q Consensus 349 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~ 415 (667)
..+..+...|. .++.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .| +..
T Consensus 420 ~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~ 496 (1157)
T PRK11447 420 NAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVW 496 (1157)
T ss_pred HHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH
Confidence 56667777774 467899999988765322 112555677888999999999999999875 44 445
Q ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCC--c---------ch
Q 005966 416 TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD--I---------VV 484 (667)
Q Consensus 416 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~---------~~ 484 (667)
.+..+...+...|++++|...++.+.+.. +.++..+..+...+...++.++|...++.+.....+ . ..
T Consensus 497 ~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 497 LTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 67778889999999999999999998754 445556666666778899999999999988654311 1 11
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHh
Q 005966 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG 564 (667)
Q Consensus 485 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (667)
+..+...+...|+.++|+.+++. .+++...+..+...+.+.|++++|+..|+++.+ ..|.+...+..++.+|.
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~ 648 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDI 648 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 23456678899999999999872 244556778888899999999999999999998 34556778999999999
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCc------hHHHHHHHHhhcCCch
Q 005966 565 RAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG------NYVLLSKLYSAVRRWK 636 (667)
Q Consensus 565 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~ 636 (667)
..|++++|++.++.. ...| +...+..+..++...|++++|...+++++...|+++. ++..++.++...|+++
T Consensus 649 ~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~ 728 (1157)
T PRK11447 649 AQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQ 728 (1157)
T ss_pred HCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHH
Confidence 999999999999987 3455 4566777888899999999999999999998876553 5667799999999999
Q ss_pred HHHHHHHHhh
Q 005966 637 DAENVRDVMD 646 (667)
Q Consensus 637 ~A~~~~~~~~ 646 (667)
+|++.+++..
T Consensus 729 ~A~~~y~~Al 738 (1157)
T PRK11447 729 QALETYKDAM 738 (1157)
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.7e-28 Score=273.01 Aligned_cols=585 Identities=11% Similarity=0.038 Sum_probs=440.8
Q ss_pred hHhhhcCChhhHHHhhcccC--C-CCcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccH--------------
Q 005966 52 SLVRAYGHVSNVRILFDEMS--E-RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTY-------------- 114 (667)
Q Consensus 52 ~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------------- 114 (667)
+++...++.+.|.+.++++. . .|+.++..++..+.+.|+.++|.+.++++.+. .|+...+
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~---~P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL---APDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCCChHHHHHHHHHHhcCCch
Confidence 78889999999999999863 3 37788999999999999999999999999986 3444332
Q ss_pred ---HHHHHHhccccchHHHHHHHHHHHHhCCCCchHH-HHHHHHHHHhcCCHHHHHHHhcccCCC---ChhhHHHHHHHH
Q 005966 115 ---PIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV-GNCLIAMYMNFGEVKAARKVFDAMWEH---SVVSWNTLISGY 187 (667)
Q Consensus 115 ---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~ 187 (667)
..+.+.+...|++++|.+.|+.+.+.. +|+... ...........|+.++|++.|+.+.+. +...+..+...+
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll 191 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLL 191 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 233456788999999999999998775 444321 111222233459999999999998543 566788899999
Q ss_pred HHcCChhHHHHHHHHHHHCCCC----------------CC---hHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchh
Q 005966 188 FKNAYAKEALVVFDWMLKSGVE----------------PD---CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248 (667)
Q Consensus 188 ~~~~~~~~A~~~~~~m~~~g~~----------------p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 248 (667)
...|++++|+..++++...... ++ ...+...+..+-.......+...+.........|...
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 9999999999999998653210 00 0112222333333334455556665554443333322
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCh-hhH--------
Q 005966 249 AWNALVDMYVKCGSVNEARLVFDRMSE---RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNS-LTI-------- 316 (667)
Q Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~t~-------- 316 (667)
.......+...|++++|+..|++..+ .+...+..+...+.+.|++++|+..|++..+....... ..+
T Consensus 272 -~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 272 -ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 22345677889999999999999875 36778899999999999999999999999875322111 111
Q ss_pred ----HHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCC---cccHHHHHHHH
Q 005966 317 ----GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKK---TVPWNAILAGC 389 (667)
Q Consensus 317 ----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~ 389 (667)
...-..+.+.|++++|...++.+.+.. +.+...+..+...+...|++++|++.|++....+ ...+..+...+
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 112334678899999999999999875 4456677889999999999999999999887433 33466666666
Q ss_pred HhCCChHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 005966 390 VHNGLARKAVELFRQMLVEVVE--------PNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461 (667)
Q Consensus 390 ~~~~~~~~A~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (667)
. .++.++|+.+++.+...... .....+..+...+...|++++|.+.++...+.. +.++..+..+...|.+
T Consensus 430 ~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 430 R-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred H-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4 46789999988775432110 011234556677888999999999999998876 4567788889999999
Q ss_pred cCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHhccC
Q 005966 462 CGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV---------TFTSALHACSHGG 531 (667)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~ll~~~~~~g 531 (667)
.|++++|...++++....| +...+..+...+...++.++|+..++++......++.. .+..+...+...|
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 9999999999999877655 44555556666778999999999998875433222221 1234566788999
Q ss_pred CHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005966 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAK 609 (667)
Q Consensus 532 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 609 (667)
++++|..+++. .+++...+..+...+.+.|++++|++.|++. ...| +...+..++..+...|++++|+..++
T Consensus 588 ~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 588 KEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred CHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999872 2345566788999999999999999999998 4555 67789999999999999999999999
Q ss_pred HhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 610 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
++.+..|+++..+..++.++...|++++|.++++++.+...
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 99999999999999999999999999999999999987653
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=5.1e-25 Score=236.55 Aligned_cols=602 Identities=10% Similarity=0.006 Sum_probs=324.1
Q ss_pred hccCChhhHhHHHHHHHHhCCCchhhhh---hHhhhcCChhhHHHhhcccCCCCc--chHHHHHHHHHhCCCchHHHHHH
Q 005966 24 AATKSIAGTKQLHAFIITSGPLFTHLRS---SLVRAYGHVSNVRILFDEMSERSS--FLYNTVMKMYAQNGASHDSLKMF 98 (667)
Q Consensus 24 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~ 98 (667)
...|++++|...+.++++.+|.+..+.. .+|...|++++|+..+++..+.++ ..|..++..+ +++++|..+|
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 3447888888888888888888722222 778888888888888877654322 2233323222 7777888888
Q ss_pred HHhHHcCCCCCCcccHHHHHHHh-----ccccchHHHHHHHHHHHHhCCCCchHHHHHH-HHHHHhcCCHHHHHHHhccc
Q 005966 99 LGMLRLGEYNPDNYTYPIVIKAC-----TDLAWRKLGIALHGRVLITGFDMDTFVGNCL-IAMYMNFGEVKAARKVFDAM 172 (667)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~ 172 (667)
+++... .|-+..++..+.... ..-.+.++|...++ .....+.|+..+.... ..+|.+.|++++|++.+..+
T Consensus 132 e~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 888775 333344444444430 11223344555554 3333333344444444 67777777777777777776
Q ss_pred CCC---ChhhHHHHHHHHHH-cCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCC-cch
Q 005966 173 WEH---SVVSWNTLISGYFK-NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG-KNI 247 (667)
Q Consensus 173 ~~~---~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 247 (667)
.+. +......|...|.. .++ +++..+++. .++-+......+...+.+.|+.+.|..++..+...... |..
T Consensus 209 ~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 209 RQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 443 33335555556665 255 666666442 23346666777777777777777777777665543211 221
Q ss_pred hH------------------------------HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHH
Q 005966 248 AA------------------------------WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNA 297 (667)
Q Consensus 248 ~~------------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 297 (667)
.+ .-.++..+.+.++++.+.++.. . .|.....-.-..+....+...++
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-T-LPANEMLEERYAVSVATRNKAEA 361 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-C-CCcchHHHHHHhhccccCchhHH
Confidence 11 1222455555666665555422 2 12211111111112223555555
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHh-c-CCCCchHHhHHHHHHHhcCC---HHHHHHH--
Q 005966 298 LGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQ-N-LECEVIVETALIDMYAKCNL---VKLSFQV-- 370 (667)
Q Consensus 298 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~~a~~~-- 370 (667)
...+..|-+.. +-+....-.+--...+.|+.++|.+++...... + -..+......++..|.+.+. ..++..+
T Consensus 362 ~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 362 LRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 55555554431 112222222222344556677777776666552 1 12233344456666666554 2222222
Q ss_pred -----------------------HhccCCC-----CcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005966 371 -----------------------FARTSKK-----KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422 (667)
Q Consensus 371 -----------------------~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 422 (667)
+...... +...|..+..++.. ++.++|+..+.+.... .|+......+..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~ 517 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAY 517 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHH
Confidence 1111111 22234555555544 5666666655555543 344443333333
Q ss_pred HHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCc-chHHHHHHHHHHcCChHHH
Q 005966 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI-VVWSVIIAGYGMHGHGETA 501 (667)
Q Consensus 423 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a 501 (667)
.+...|++++|...++.+... +|....+..+..++.+.|++++|...++......|+. ..+..+.....+.|++++|
T Consensus 518 al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHH
Confidence 445666666666666665433 2333334455556666666666666666665544332 1222222233344666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-C
Q 005966 502 VSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-P 580 (667)
Q Consensus 502 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 580 (667)
+..+++..+. .|+...+..+..++.+.|++++|+..+++..+ ..|.+...+..+...+...|++++|+..+++. .
T Consensus 596 l~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 596 LNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666654 34555566666666666666666666666665 23334555666666666666666666666665 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 581 LKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 581 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
..| ++..+..+..++...|++++|+..+++++++.|++..+....+++..+..+++.|.+.+++....
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~ 740 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTF 740 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 444 44556666666666666666666666666666666666666666666666666666666655443
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=3.3e-24 Score=230.41 Aligned_cols=568 Identities=9% Similarity=-0.008 Sum_probs=411.3
Q ss_pred hHhhhcCChhhHHHhhcccCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchH
Q 005966 52 SLVRAYGHVSNVRILFDEMSE--R-SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128 (667)
Q Consensus 52 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 128 (667)
..+...|++++|...|+...+ | +..++..|.+.|.+.|++++|+..+++..+. .|+...|..++..+ +++.
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l---dP~n~~~~~~La~i---~~~~ 125 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR---HPGDARLERSLAAI---PVEV 125 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHHHHh---ccCh
Confidence 556666999999999998753 3 5678999999999999999999999999976 56555555555333 8899
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHH--------HHhcCCHHHHHHHhcccCC-CChhhHH-HHHHHHHHcCChhHHHH
Q 005966 129 LGIALHGRVLITGFDMDTFVGNCLIAM--------YMNFGEVKAARKVFDAMWE-HSVVSWN-TLISGYFKNAYAKEALV 198 (667)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~-~~~~~~~-~li~~~~~~~~~~~A~~ 198 (667)
+|..+++++.+.. +-+..++..+... |.+.+...++++ .+.... ++..... .+...|.+.|++++|++
T Consensus 126 kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 126 KSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred hHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999999999997 5556666666665 888777777777 333322 2344344 44899999999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHccc-CcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 005966 199 VFDWMLKSGVEPDCASVVSVLPACGY-LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-- 275 (667)
Q Consensus 199 ~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 275 (667)
.+.++.+.+... ..-...+-.++.. .++ +.+..++.. .+..+...+..+++.|.+.|+.++|.++++++..
T Consensus 204 lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 999999975433 3334455556666 355 777777543 3346888999999999999999999999999874
Q ss_pred ---CChhHHH------------------------------HHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 005966 276 ---RDVVTWT------------------------------SMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322 (667)
Q Consensus 276 ---~~~~~~~------------------------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 322 (667)
|...+|- .++..+.+.++++.+.++. .+.|..... .+..
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~r~ 349 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEML--EERY 349 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHH--HHHH
Confidence 2222211 1244455556665444331 134444432 2322
Q ss_pred --hhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCC--Cc---c-cHHHHHHHHHhCCC
Q 005966 323 --CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKK--KT---V-PWNAILAGCVHNGL 394 (667)
Q Consensus 323 --~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~---~-~~~~li~~~~~~~~ 394 (667)
....+...++...+..+.+.. +-+......+.-.....|+.++|..+|...... +. . .-+-++..|.+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 223355556666666655543 334555555666677899999999999887642 11 1 13466777777665
Q ss_pred ---hHHHHHH----------------------HHHHHHC-CCCC---CHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Q 005966 395 ---ARKAVEL----------------------FRQMLVE-VVEP---NDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445 (667)
Q Consensus 395 ---~~~A~~~----------------------~~~m~~~-g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 445 (667)
..++..+ +...... +..| +...+..+..++.. ++.++|...+.......
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~- 506 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ- 506 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-
Confidence 3444333 1111111 2223 45566666666655 88888999888776654
Q ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005966 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525 (667)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 525 (667)
|+......+...+...|++++|...|+++....|+...+..+...+.+.|+.++|...+++.++.. +++...+..+..
T Consensus 507 -Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~ 584 (987)
T PRK09782 507 -PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHA 584 (987)
T ss_pred -CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 444444445566678999999999999887765666667778888999999999999999999864 223333444445
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 005966 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVEL 603 (667)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 603 (667)
.....|++++|...+++..+. .|+...+..+..++.+.|++++|+..+++. ...| +...+..+..++...|++++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 566779999999999999872 356788999999999999999999999997 5666 56678888889999999999
Q ss_pred HHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 604 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
|+..++++++..|+++.++..++.+|...|++++|+..+++..+..
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998765
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.92 E-value=6.9e-20 Score=184.11 Aligned_cols=589 Identities=13% Similarity=0.069 Sum_probs=421.9
Q ss_pred hHhhhcCC--hhhHHHhhcccCCC---CcchHHHHHHHHHhCCCchHHHHHHHHhHHc-CCCCCCcccHHHHHHHhcccc
Q 005966 52 SLVRAYGH--VSNVRILFDEMSER---SSFLYNTVMKMYAQNGASHDSLKMFLGMLRL-GEYNPDNYTYPIVIKACTDLA 125 (667)
Q Consensus 52 ~~~~~~g~--~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~ 125 (667)
..+...|. ++.|...|..+.+. |+-..-.-.......|++..|+.+|...+.. +..+||. ...+..++.+.+
T Consensus 136 ~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~ 213 (1018)
T KOG2002|consen 136 GFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLG 213 (1018)
T ss_pred hhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhcc
Confidence 44555554 48899999887533 3333322233344578999999999997764 1233343 333446677899
Q ss_pred chHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC---CHHHHHHHhccc---CCCChhhHHHHHHHHHHcCChhHHHHH
Q 005966 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG---EVKAARKVFDAM---WEHSVVSWNTLISGYFKNAYAKEALVV 199 (667)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~ 199 (667)
+.+.|+..|.+..+..+ .++.++-.|.-.-.... .+..+...+... ...|++..+.|...|.-.|+++.++.+
T Consensus 214 ~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~l 292 (1018)
T KOG2002|consen 214 MSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHL 292 (1018)
T ss_pred chhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHH
Confidence 99999999999988762 33444433333222333 344555555544 334889999999999999999999999
Q ss_pred HHHHHHCCCC--CChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 005966 200 FDWMLKSGVE--PDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-- 275 (667)
Q Consensus 200 ~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 275 (667)
...+...... .-...|-.+.+++-..|+++.|..+|-...+..-...+..+--+..+|.+.|+++.+...|+.+.+
T Consensus 293 a~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~ 372 (1018)
T KOG2002|consen 293 AEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL 372 (1018)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC
Confidence 9888764311 123457888889999999999999999888775443355567788999999999999999999876
Q ss_pred C-ChhHHHHHHHHHHhCC----ChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHH----HHHHHhcCCC
Q 005966 276 R-DVVTWTSMINGYALNG----DVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLH----AWTIKQNLEC 346 (667)
Q Consensus 276 ~-~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~----~~~~~~~~~~ 346 (667)
| +..+..++...|...+ ..+.|..++.+..+.- +.|...|..+-..+....-+.. ...+ +.+...+..+
T Consensus 373 p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~i 450 (1018)
T KOG2002|consen 373 PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQI 450 (1018)
T ss_pred cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCC
Confidence 3 3445556666666554 4566666666665532 3455566665555554433333 4443 3445566678
Q ss_pred CchHHhHHHHHHHhcCCHHHHHHHHhccCCC-------Cc-----c-cHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 005966 347 EVIVETALIDMYAKCNLVKLSFQVFARTSKK-------KT-----V-PWNAILAGCVHNGLARKAVELFRQMLVEVVEPN 413 (667)
Q Consensus 347 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~-----~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 413 (667)
.+.+.|.+...+...|+++.|...|...... +. + .-..+...+-..++.+.|.+.|+.+... .|.
T Consensus 451 p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~ 528 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPG 528 (1018)
T ss_pred CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--Cch
Confidence 8999999999999999999999999865421 21 1 1223455556678999999999999875 454
Q ss_pred HH-HHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---CCcchHHHHH
Q 005966 414 DA-TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD---KDIVVWSVII 489 (667)
Q Consensus 414 ~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~ 489 (667)
-+ .|..+.......+...+|...+....... ..++...+.+.+.+.+...+..|.+-|..+.... +|..+.-+|.
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 43 34444433344578888998888887655 5566777777888988888888888555544432 5555555565
Q ss_pred HHHH------------HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHH
Q 005966 490 AGYG------------MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557 (667)
Q Consensus 490 ~~~~------------~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 557 (667)
..|. ..+..++|+++|.+.++.. +-|...-+.+.-.++..|++.+|..+|.++.+... ....+|-
T Consensus 608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~~~dv~l 684 (1018)
T KOG2002|consen 608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS--DFEDVWL 684 (1018)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh--hCCceee
Confidence 5443 2345788999999999875 33667778888889999999999999999998433 3345588
Q ss_pred HHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhc-
Q 005966 558 CIVDLLGRAGRLDEAYDLIRTM----PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAV- 632 (667)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~- 632 (667)
.+..+|..+|+|..|+++|+.. -.+.++.++..|.+++.+.|.+.+|.+.+..++...|.|+.+.+.++-+..+.
T Consensus 685 Nlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 685 NLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence 9999999999999999999986 24558889999999999999999999999999999999999888877765543
Q ss_pred ------------------CCchHHHHHHHHhhhCCCc
Q 005966 633 ------------------RRWKDAENVRDVMDEKGLR 651 (667)
Q Consensus 633 ------------------g~~~~A~~~~~~~~~~~~~ 651 (667)
+..++|.++|+.|.+.+.+
T Consensus 765 ~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 765 ESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3567888888888877654
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=6.3e-21 Score=181.72 Aligned_cols=444 Identities=15% Similarity=0.149 Sum_probs=338.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCh-HHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Q 005966 180 WNTLISGYFKNAYAKEALVVFDWMLKSGVEPDC-ASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258 (667)
Q Consensus 180 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 258 (667)
...|..-..+.|++++|.+.-...-+.+ |+. .+...+-..+.+..+.+...+--....+.. +.-..+|..+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 3344555566777777777655443321 221 122222222344444444433333333322 224567888888888
Q ss_pred hcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH-hhcccchHHHHH
Q 005966 259 KCGSVNEARLVFDRMSE---RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA-CSSLYYLKRGRS 334 (667)
Q Consensus 259 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~~~~~~a~~ 334 (667)
..|++++|+..++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+.. ....|.++++..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHH
Confidence 88999999999888876 3566788888888999999999998888876 45665544433333 334677788887
Q ss_pred HHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 005966 335 LHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP---WNAILAGCVHNGLARKAVELFRQMLVEVVE 411 (667)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 411 (667)
-+...++.. +--..+|+.|...+-..|+...|+..|++..+-|+.. |-.|...|...+.+++|+..|.+... .+
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lr 282 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LR 282 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cC
Confidence 777766654 2335677888888889999999999999887555433 88888899999999999999988775 46
Q ss_pred CCH-HHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCC-cchHHHHH
Q 005966 412 PND-ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD-IVVWSVII 489 (667)
Q Consensus 412 p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~ 489 (667)
|+. ..+..+...|..+|.++-|+..+++.++.. +.-+..|+.|..++-..|++.+|++.|.+.....|+ ..+.+.|.
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLg 361 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLG 361 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 654 567777778889999999999999988765 445778999999999999999999999988876654 57888999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCc-hhHHHHHHHHHhhcC
Q 005966 490 AGYGMHGHGETAVSLFKEMVQSGVQPNE-VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR-ADHYTCIVDLLGRAG 567 (667)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 567 (667)
..+...|.+++|..+|....+ +.|.. ..++.|...|-.+|++++|+..++++++ +.|+ ...|+.+...|-..|
T Consensus 362 ni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhh
Confidence 999999999999999999988 45664 4688899999999999999999999987 4455 578999999999999
Q ss_pred ChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchH
Q 005966 568 RLDEAYDLIRTM-PLKPTH-AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKD 637 (667)
Q Consensus 568 ~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 637 (667)
+.+.|++.+.+. .+.|.. ...+.|...|...|+..+|+..|+.+++++||-|.++..++.++.--.+|.+
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 999999999887 677754 4788999999999999999999999999999999999988887665555544
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=1.3e-21 Score=186.38 Aligned_cols=421 Identities=12% Similarity=0.096 Sum_probs=341.2
Q ss_pred HHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCCh
Q 005966 218 VLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE---RDVVTWTSMINGYALNGDV 294 (667)
Q Consensus 218 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~ 294 (667)
+..-..+.|++++|++.-..+-..+ +.+....-.+-..+.+..+.+....--....+ .-..+|..+...+-..|++
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 3344556788888887766655543 22333333444556666666665544333332 3456899999999999999
Q ss_pred HHHHHHHHHHHhcCCCC-ChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhc
Q 005966 295 RNALGLFQLMQFEGVRP-NSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR 373 (667)
Q Consensus 295 ~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 373 (667)
++|+.+++.+.+. +| ....|..+..++...|+.+.+.+.+....+.+ +....+.+.+...+...|++.+|...+.+
T Consensus 133 ~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 133 QDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred HHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 9999999999884 45 45678888999999999999999998887654 22223344556666778999999998877
Q ss_pred cCCCC---cccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCc
Q 005966 374 TSKKK---TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND-ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVV 449 (667)
Q Consensus 374 ~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 449 (667)
....+ .+.|+.|...+-.+|+...|++.|++... +.|+- ..|-.|-..|...+.++.|...+.+..... +...
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A 286 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHA 286 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccch
Confidence 65333 34499999999999999999999999885 45654 577788888888999999999888877654 4456
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCC-cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 005966 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE-VTFTSALHAC 527 (667)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~ 527 (667)
..+..+...|-..|.++-|++.|++..+..|+ +..|+.|..++...|++.+|...|.+.+.. .|+. .+.+.|...+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 77778888899999999999999999988876 579999999999999999999999999985 4554 5788899999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 005966 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTH-AVWGALLGACVIHGNVELGE 605 (667)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~ 605 (667)
...|.+++|..+|....+ ..+--...++.|...|-.+|++++|+..+++. .++|+. ..++.+...|-..|+...|+
T Consensus 365 ~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 999999999999999987 33333567889999999999999999999987 788865 58999999999999999999
Q ss_pred HHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 606 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
+.+.+++..+|.-..++..|+.+|...|+..+|+.-+++..+..
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999987654
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=4.2e-20 Score=196.03 Aligned_cols=423 Identities=12% Similarity=0.004 Sum_probs=276.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Q 005966 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYV 258 (667)
Q Consensus 179 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 258 (667)
.+......+.+.|++++|+..|++... +.|+...|..+..++...|+++.|...++.+++.. +.+..++..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 455667778888999999999988876 46666666666666666666666666666666553 224455666666666
Q ss_pred hcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHH
Q 005966 259 KCGSVNEARLVFDRMSER---DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSL 335 (667)
Q Consensus 259 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 335 (667)
..|++++|...|..+... +......++..... ..+........+. .|
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~~------------------------ 255 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET--KP------------------------ 255 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc--CC------------------------
Confidence 666666666655443221 11111111111111 1111111111111 01
Q ss_pred HHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCc---ccHHHHHHH---HHhCCChHHHHHHHHHHHHCC
Q 005966 336 HAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT---VPWNAILAG---CVHNGLARKAVELFRQMLVEV 409 (667)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~---~~~~~~~~~A~~~~~~m~~~g 409 (667)
.+...+..+.. |...........-+......+. ..+..+... ....+++++|++.|++..+.+
T Consensus 256 ----------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~ 324 (615)
T TIGR00990 256 ----------ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG 324 (615)
T ss_pred ----------CCCCCHHHHHH-HHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC
Confidence 11111111111 1111011111111111111111 111111111 123467889999999988765
Q ss_pred -CCCC-HHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHH
Q 005966 410 -VEPN-DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWS 486 (667)
Q Consensus 410 -~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 486 (667)
..|+ ...+..+...+...|++++|...++...+.. +.....+..+..++...|++++|...|+++....| +...|.
T Consensus 325 ~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~ 403 (615)
T TIGR00990 325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYY 403 (615)
T ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 2343 3566777777788999999999999888764 34466788888899999999999999998877665 467888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhc
Q 005966 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566 (667)
Q Consensus 487 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (667)
.+...+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|+..++...+ ..+.+...++.++.++...
T Consensus 404 ~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQ 480 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHc
Confidence 89999999999999999999999864 23456677788889999999999999999987 3445577788899999999
Q ss_pred CChHHHHHHHHhC-CCCCCH-HH-------HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchH
Q 005966 567 GRLDEAYDLIRTM-PLKPTH-AV-------WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKD 637 (667)
Q Consensus 567 g~~~~A~~~~~~~-~~~p~~-~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 637 (667)
|++++|++.|++. ...|+. .. ++.....+...|++++|+..++++++++|++..++..++.+|...|++++
T Consensus 481 g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 481 NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred cCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHH
Confidence 9999999999986 444431 11 11122223446999999999999999999988899999999999999999
Q ss_pred HHHHHHHhhhCC
Q 005966 638 AENVRDVMDEKG 649 (667)
Q Consensus 638 A~~~~~~~~~~~ 649 (667)
|++.|++..+..
T Consensus 561 Ai~~~e~A~~l~ 572 (615)
T TIGR00990 561 ALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.90 E-value=4.7e-19 Score=178.20 Aligned_cols=627 Identities=12% Similarity=0.074 Sum_probs=431.6
Q ss_pred hhHHHHHHHHhhccCChhhHhHHHHHHHHhC------CCchhhhh----hHhh-hcC-----------ChhhHHHhhccc
Q 005966 13 THLVIKLVQQYAATKSIAGTKQLHAFIITSG------PLFTHLRS----SLVR-AYG-----------HVSNVRILFDEM 70 (667)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~----~~~~-~~g-----------~~~~A~~~~~~~ 70 (667)
.+++..++..|...|..++...+.+...... +.....+. ..|. ..+ -...|..+|+..
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 3566777888888888888888887766221 11111111 2222 111 123344455443
Q ss_pred CCCCcchHHHH---HHHHHhCCC--chHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCC--C
Q 005966 71 SERSSFLYNTV---MKMYAQNGA--SHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGF--D 143 (667)
Q Consensus 71 ~~~~~~~~~~l---~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~ 143 (667)
..-+...+..+ -..|...|. .+.|...|....+. .+++.-.+..-.......+++..|..+|..++...+ +
T Consensus 121 ~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~--sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~ 198 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQ--SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACK 198 (1018)
T ss_pred HHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC
Confidence 22222211111 122333444 58999999999987 566655555555555678899999999999877653 4
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHH---HHc---CChhHHHHHHHHHHHCCCCCChHHHHH
Q 005966 144 MDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGY---FKN---AYAKEALVVFDWMLKSGVEPDCASVVS 217 (667)
Q Consensus 144 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~---~~~---~~~~~A~~~~~~m~~~g~~p~~~~~~~ 217 (667)
||+.+ .+..++.++|+.+.|+..|.+..+-|+..-++++... ... ..+..++.++...-... .-++...+.
T Consensus 199 aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~ 275 (1018)
T KOG2002|consen 199 ADVRI--GIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNH 275 (1018)
T ss_pred CCccc--hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHH
Confidence 55543 3345678999999999999998776665555444322 222 33556666666654421 235567788
Q ss_pred HHHHcccCcchHHHHHHHHHHHhcCCCc--chhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CCh--hHHHHHHHHHHhC
Q 005966 218 VLPACGYLKEIEMGRMIHELVAGGRLGK--NIAAWNALVDMYVKCGSVNEARLVFDRMSE--RDV--VTWTSMINGYALN 291 (667)
Q Consensus 218 ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~ 291 (667)
|-+-+.-.|+++.+..+.+.+....... -...|-.+..+|-..|++++|...|.+..+ +|. ..+--+...+++.
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 8888999999999999999888764221 233577889999999999999999988776 333 3445678899999
Q ss_pred CChHHHHHHHHHHHhcCCCCC-hhhHHHHHHHhhccc----chHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCC---
Q 005966 292 GDVRNALGLFQLMQFEGVRPN-SLTIGSLLSACSSLY----YLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL--- 363 (667)
Q Consensus 292 ~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 363 (667)
|+++.+...|+..... .|| ..|...+-..|+..+ ..+.|..+.....+.- +.|...|-.+..+|....-
T Consensus 356 ~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s 432 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS 432 (1018)
T ss_pred chHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH
Confidence 9999999999999874 354 455555555565553 3455555555554443 5566677777776655433
Q ss_pred ---HHHHHHHHhccC-CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHhCcCCH
Q 005966 364 ---VKLSFQVFARTS-KKKTVPWNAILAGCVHNGLARKAVELFRQMLVE---VVEPND------ATLNSLLPAYAILADL 430 (667)
Q Consensus 364 ---~~~a~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~------~~~~~ll~~~~~~~~~ 430 (667)
+..|..++.... ...+...|.+.......|++.+|...|.+.... -..+|. .+--.+....-..++.
T Consensus 433 L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT 512 (1018)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh
Confidence 334444443333 333344899999999999999999999987754 122333 2233344455667899
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-CCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 005966 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD-KDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509 (667)
Q Consensus 431 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 509 (667)
+.|.+.|..+.+.. +.-+..|-.++-+....+...+|...++...... .++..|..+...+.....+..|.+-|....
T Consensus 513 ~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~ 591 (1018)
T KOG2002|consen 513 EVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETIL 591 (1018)
T ss_pred hHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHH
Confidence 99999999998765 2223333333323333467889999999877655 567788888888999999999999887776
Q ss_pred HcC-CCCCHHHHHHHHHHHhcc------------CCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHH
Q 005966 510 QSG-VQPNEVTFTSALHACSHG------------GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576 (667)
Q Consensus 510 ~~~-~~p~~~~~~~ll~~~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 576 (667)
+.- ..+|..+...|.+.|... +..++|+++|.++++ ..|.|...-+.++-+++..|++.+|..+|
T Consensus 592 ~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 592 KKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred hhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHH
Confidence 532 236776666676655422 467889999999988 55677777888999999999999999999
Q ss_pred HhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC--CCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 577 RTMP--LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE--PENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 577 ~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
.+.. ......+|..+..+|..+|++..|+++|+..++.. .+++.+...|+.++.+.|++.+|.+.+.......+
T Consensus 670 sqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 670 SQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 9984 33356689999999999999999999999998744 34678999999999999999999999988776543
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=4.3e-20 Score=186.45 Aligned_cols=298 Identities=13% Similarity=0.072 Sum_probs=232.2
Q ss_pred HHHhcCCHHHHHHHHhccCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhCcCCH
Q 005966 357 MYAKCNLVKLSFQVFARTSKKKT---VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN---DATLNSLLPAYAILADL 430 (667)
Q Consensus 357 ~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~ 430 (667)
.+...|++++|...|.++...++ ..+..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 45566778888888877764333 3477778888888888888888888876543222 24567778888888999
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCc------chHHHHHHHHHHcCChHHHHHH
Q 005966 431 QQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI------VVWSVIIAGYGMHGHGETAVSL 504 (667)
Q Consensus 431 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~ 504 (667)
+.|..+++.+.+.. +.+...+..++.++.+.|++++|.+.++.+....|+. ..+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999998887653 4567788888999999999999999998887655432 2355677788899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC
Q 005966 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP 583 (667)
Q Consensus 505 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 583 (667)
|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. ........+..++.+|.+.|++++|...++++ ...|
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99998864 224557778888999999999999999999873 11122456788999999999999999999987 4677
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhh--cCCchHHHHHHHHhhhCCCccCCCee
Q 005966 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSA--VRRWKDAENVRDVMDEKGLRKAPAHS 657 (667)
Q Consensus 584 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~ 657 (667)
+...+..++..+.+.|++++|...++++++..|+++.....+...+.. .|+.++|...+++|.+++++++|.+.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 777778888999999999999999999999999976544334333322 56999999999999999999888753
No 19
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.87 E-value=2.1e-16 Score=158.35 Aligned_cols=633 Identities=11% Similarity=0.090 Sum_probs=419.7
Q ss_pred CCCCCCCCCC-hhHHHHHHHHhhccCChhhHhHHHHHHHHhCCCc--hhhhh-hHhhhcCChhhHHHhhccc---CCCCc
Q 005966 3 GPSHHTLPKT-THLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF--THLRS-SLVRAYGHVSNVRILFDEM---SERSS 75 (667)
Q Consensus 3 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~-~~~~~~g~~~~A~~~~~~~---~~~~~ 75 (667)
+|...+.++. ...+...+......|+++.|..++..+++.+|.+ +|-.. .+|-..|+.+++...+--+ .+.|.
T Consensus 128 ~~r~~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~ 207 (895)
T KOG2076|consen 128 RSRGKSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY 207 (895)
T ss_pred CCCcccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh
Confidence 4555554433 4556666666667799999999999999999988 55444 9999999999998866543 34477
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHH---
Q 005966 76 FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCL--- 152 (667)
Q Consensus 76 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--- 152 (667)
.-|..+.....+.|++++|.-.|.+.++. .|++...+-.-...|-+.|+...|...|.++.....+.|..-...+
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 88999999999999999999999999987 5666666667778888999999999999999998754444433333
Q ss_pred -HHHHHhcCCHHHHHHHhcccCC--C---ChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHH-----------
Q 005966 153 -IAMYMNFGEVKAARKVFDAMWE--H---SVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASV----------- 215 (667)
Q Consensus 153 -i~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~----------- 215 (667)
+..+...++-+.|.+.++.... . +...++.++..+.+...++.|......+.....++|..-+
T Consensus 286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 4556667777999988887644 2 4567999999999999999999998888763333332222
Q ss_pred ---------------HHHHHHcccCcchHHHHHHHHHHHhcCC--CcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---
Q 005966 216 ---------------VSVLPACGYLKEIEMGRMIHELVAGGRL--GKNIAAWNALVDMYVKCGSVNEARLVFDRMSE--- 275 (667)
Q Consensus 216 ---------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 275 (667)
.-+.-++.+.+..+....+.......+. .-++..|..+.++|...|++.+|+.+|..+..
T Consensus 366 ~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~ 445 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG 445 (895)
T ss_pred ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence 1233345566667777777777777763 34567889999999999999999999999876
Q ss_pred -CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChh-hHHHHHHHhhcccchHHHHHHHHHHH--------HhcCC
Q 005966 276 -RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL-TIGSLLSACSSLYYLKRGRSLHAWTI--------KQNLE 345 (667)
Q Consensus 276 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~ 345 (667)
.+...|--+..+|...|.+++|.+.|+..... .|+.. .-.+|-..+.+.|+.++|.+.+..+. ..+..
T Consensus 446 ~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 446 YQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 46678889999999999999999999998874 45433 33444455777888998888887743 22345
Q ss_pred CCchHHhHHHHHHHhcCCHHHHHHHHhccCCC--------------------------CcccHHHHHHHHHhCCChHHHH
Q 005966 346 CEVIVETALIDMYAKCNLVKLSFQVFARTSKK--------------------------KTVPWNAILAGCVHNGLARKAV 399 (667)
Q Consensus 346 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------------------~~~~~~~li~~~~~~~~~~~A~ 399 (667)
|+........+.+...|+.++-...-..+..+ +.......+.+-.+.++.....
T Consensus 524 ~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 603 (895)
T KOG2076|consen 524 PERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVME 603 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhh
Confidence 55566666677778888776644433222100 0001112222222222211111
Q ss_pred H------HHHHHHHCCCCCCHH--HHHHHHHHHhCcCCHHHHHHHHHHHHHhCC--CCCc---hHHHHHHHHHHhcCCHH
Q 005966 400 E------LFRQMLVEVVEPNDA--TLNSLLPAYAILADLQQAMNIHCYLIRYGF--LSVV---EVSTGLIDIYSKCGSLE 466 (667)
Q Consensus 400 ~------~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~ 466 (667)
+ .+.--...|+..+.. -+.-++.++++.+.+++|..+...+..... .++. ..-...+.+....+++.
T Consensus 604 ~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~ 683 (895)
T KOG2076|consen 604 KALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPG 683 (895)
T ss_pred hcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHH
Confidence 1 111111123333332 345566677888888888888877765432 2222 23345556667788888
Q ss_pred HHHHHHhhCCCC-----CC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHH
Q 005966 467 SAHKIFSEIPIK-----DK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE--VTFTSALHACSHGGLLDEGLD 538 (667)
Q Consensus 467 ~A~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~ 538 (667)
.|.+.++.+... .| -...||..++.+.+.++-.--.+.+...... .|+. ........-....+.+..|+.
T Consensus 684 ~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~~~s~~~Al~ 761 (895)
T KOG2076|consen 684 DAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHNLFVNASFKHALQ 761 (895)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechhHhhccchHHHHH
Confidence 888888877665 22 2346666666666655544444444443332 2222 222222233456678888888
Q ss_pred HHHHhHHhcCCCCchhHHHH-HHHHHh----------hcCChHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCHHH
Q 005966 539 LFNFMLENHQTCSRADHYTC-IVDLLG----------RAGRLDEAYDLIRTMP--LKP--THAVWGALLGACVIHGNVEL 603 (667)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~-l~~~~~----------~~g~~~~A~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~~~~ 603 (667)
.+-.+.... |+....+. ++-++. |.-..-+++.++.+.. ..+ ...++..++++|..-|-...
T Consensus 762 ~y~ra~~~~---pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~L 838 (895)
T KOG2076|consen 762 EYMRAFRQN---PDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHL 838 (895)
T ss_pred HHHHHHHhC---CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHH
Confidence 877776633 44333332 222221 1112344555554441 222 45678889999999999999
Q ss_pred HHHHHHHhhccCCCCC------------chHHHHHHHHhhcCCchHHHHHHHH
Q 005966 604 GEVAAKWLFELEPENP------------GNYVLLSKLYSAVRRWKDAENVRDV 644 (667)
Q Consensus 604 A~~~~~~~~~~~p~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~ 644 (667)
|...|+++++..|.+. .+-+.|.-+|..+|+...|.+++++
T Consensus 839 A~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 839 AVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 9999999999876532 1455677789999999999998865
No 20
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=9.3e-16 Score=147.82 Aligned_cols=626 Identities=12% Similarity=0.027 Sum_probs=473.1
Q ss_pred ChhHHHHHHHHhh-----ccCChhhHhHHHHHHHHhCCCc--hhhhh-hHhhhcCChhhHHHhhcccC---CCCcchHHH
Q 005966 12 TTHLVIKLVQQYA-----ATKSIAGTKQLHAFIITSGPLF--THLRS-SLVRAYGHVSNVRILFDEMS---ERSSFLYNT 80 (667)
Q Consensus 12 ~~~~~~~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~-~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 80 (667)
|+..|..=+++-. .++++..|+-++..+.+.+|.+ ..+.+ .+--..|++..|+.+..+-+ .++...|--
T Consensus 245 DpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLe 324 (913)
T KOG0495|consen 245 DPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLE 324 (913)
T ss_pred CchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHH
Confidence 3455555555543 2456778888888899999987 44444 77777799999998887644 345555543
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 005966 81 VMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG 160 (667)
Q Consensus 81 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 160 (667)
-+ +....+.|-.+.....+. +|.++..|.-... -..+...=..++...++.- +.++..|-. -....
T Consensus 325 ai----RLhp~d~aK~vvA~Avr~--~P~Sv~lW~kA~d---LE~~~~~K~RVlRKALe~i-P~sv~LWKa----AVelE 390 (913)
T KOG0495|consen 325 AI----RLHPPDVAKTVVANAVRF--LPTSVRLWLKAAD---LESDTKNKKRVLRKALEHI-PRSVRLWKA----AVELE 390 (913)
T ss_pred HH----hcCChHHHHHHHHHHHHh--CCCChhhhhhHHh---hhhHHHHHHHHHHHHHHhC-CchHHHHHH----HHhcc
Confidence 33 233556677777777765 4444444433332 2233444456777777663 555555543 34556
Q ss_pred CHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHH-
Q 005966 161 EVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVA- 239 (667)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~- 239 (667)
..++|.-++.+..+--.. -.-|.-+|.+..-++.|..+++..++. ++.+...|.+....=-..|..+...++.+..+
T Consensus 391 ~~~darilL~rAveccp~-s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~ 468 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQ-SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLS 468 (913)
T ss_pred ChHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 667787777766442111 122344566677788999999998875 67778888887777778888888888876543
Q ss_pred ---hcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC------CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 005966 240 ---GGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE------RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310 (667)
Q Consensus 240 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 310 (667)
..|+..+...|-.=...|-+.|.+-.+..+...+.. .--.+|+.-...|.+.+.++-|..+|....+. .+
T Consensus 469 ~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp 547 (913)
T KOG0495|consen 469 ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FP 547 (913)
T ss_pred HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-cc
Confidence 467778888888888888888888888888877653 23467888889999999999999999888774 23
Q ss_pred CChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCc---ccHHHHHH
Q 005966 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKT---VPWNAILA 387 (667)
Q Consensus 311 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~ 387 (667)
-+...+......--..|..+....++..+...- +-....+-.....+-..|++..|+.++....+.++ ..|-.-+.
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavK 626 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVK 626 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 344555555555566788888888888887764 34455666667777888999999999988764443 34888888
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHH
Q 005966 388 GCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLES 467 (667)
Q Consensus 388 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (667)
....+..++.|..+|.+... ..|+...|..-+..--..+..++|.+++++.++.- +.-...|-.+.+.+.+.++++.
T Consensus 627 le~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 627 LEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred HhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHH
Confidence 88999999999999998875 56777777766666677899999999998887753 5567788899999999999999
Q ss_pred HHHHHhhCCCCCCC-cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005966 468 AHKIFSEIPIKDKD-IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546 (667)
Q Consensus 468 A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 546 (667)
|.+.|..-...-|+ +..|-.+...-.+.|+.-+|..++++.+-.++ -|...|...+..-.+.|..+.|..+..++++
T Consensus 704 aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQ- 781 (913)
T KOG0495|consen 704 AREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQ- 781 (913)
T ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 99999987777675 46788888888889999999999999998763 3677899999999999999999999999988
Q ss_pred cCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHH
Q 005966 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626 (667)
Q Consensus 547 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 626 (667)
..+.+...|.--|.+..+.++-..+.+.+++.. -|+..+..+...+....+++.|...|++++..+|++.++|..+-
T Consensus 782 -ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fy 858 (913)
T KOG0495|consen 782 -ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFY 858 (913)
T ss_pred -hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHH
Confidence 676777889989999999999888888888875 35667777888889999999999999999999999999999999
Q ss_pred HHHhhcCCchHHHHHHHHhhhCCCccCCCeeEEEeCCEe
Q 005966 627 KLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNIL 665 (667)
Q Consensus 627 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (667)
..+...|.-++-.+++.++.... +.-|..|..|...|
T Consensus 859 kfel~hG~eed~kev~~~c~~~E--P~hG~~W~avSK~i 895 (913)
T KOG0495|consen 859 KFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVSKDI 895 (913)
T ss_pred HHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHhhhH
Confidence 99999999999999999998875 44577777766554
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=5.9e-18 Score=178.81 Aligned_cols=333 Identities=12% Similarity=0.025 Sum_probs=244.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHH
Q 005966 280 TWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYA 359 (667)
Q Consensus 280 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 359 (667)
....++..+.+.|++++|..+++........+. ..+..+..+....|+.+.|...++.+.... +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 344556667777777777777777766533332 233333344555777777777777776654 444566777788888
Q ss_pred hcCCHHHHHHHHhccCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHH
Q 005966 360 KCNLVKLSFQVFARTSK---KKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNI 436 (667)
Q Consensus 360 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 436 (667)
..|++++|...+++... .+...+..+...+...|++++|...++++......+.. .+.. +..+...|++++|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~-~~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIAT-CLSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHH-HHHHHHcCCHHHHHHH
Confidence 88888888888887753 33445788888899999999999999888765333222 2222 3347788999999999
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCC-cchHHHHHHHHHHcCChHH----HHHHHHHHHHc
Q 005966 437 HCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHGHGET----AVSLFKEMVQS 511 (667)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~ 511 (667)
++.+.+....++......+...+.+.|++++|...++++....|+ ...+..+...+...|++++ |...|++..+.
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 888877653344455555677888899999999999988876654 5677788888999999885 78999998886
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHH-HH
Q 005966 512 GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHAV-WG 589 (667)
Q Consensus 512 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~ 589 (667)
. +.+...+..+...+...|++++|...++++.+. .+.+...+..+..++.+.|++++|+..++++ ...|+... +.
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 3 224567888888899999999999999998873 3344566777888999999999999999887 45665543 34
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCC
Q 005966 590 ALLGACVIHGNVELGEVAAKWLFELEPENP 619 (667)
Q Consensus 590 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 619 (667)
.+..++...|+.++|+..++++++..|++.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 456678889999999999999999999864
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=3.3e-19 Score=179.98 Aligned_cols=293 Identities=11% Similarity=-0.007 Sum_probs=172.7
Q ss_pred hHhhhcCChhhHHHhhcccCCC---CcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCC---cccHHHHHHHhcccc
Q 005966 52 SLVRAYGHVSNVRILFDEMSER---SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPD---NYTYPIVIKACTDLA 125 (667)
Q Consensus 52 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~ 125 (667)
..+...|++++|...|.++... +..+|..+...+...|++++|+..++.+... +..++ ...+..+...+...|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCC
Confidence 4445556666666666665422 3345666666666666666666666666654 11111 134555566666666
Q ss_pred chHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCC--------hhhHHHHHHHHHHcCChhHHH
Q 005966 126 WRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS--------VVSWNTLISGYFKNAYAKEAL 197 (667)
Q Consensus 126 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~A~ 197 (667)
+++.|..+|+.+.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+ ...|..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 6666666666666543 3455566666666666666666666666653321 112344555566666666666
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 005966 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-- 275 (667)
Q Consensus 198 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 275 (667)
..|+++.+.. ..+...+..+...+.+.|++++|..+++.+.+.+......+++.++.+|...|++++|...++++.+
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666665532 1123345555566666666666666666666543332344566666667777777777777666554
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhc---ccchHHHHHHHHHHHHhcCCCCch
Q 005966 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS---LYYLKRGRSLHAWTIKQNLECEVI 349 (667)
Q Consensus 276 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 349 (667)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.+.++.+++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 55555566666666777777777777666553 4666666666655443 346666666666666666555544
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=1.5e-17 Score=176.55 Aligned_cols=232 Identities=12% Similarity=0.038 Sum_probs=153.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 005966 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPN-DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461 (667)
Q Consensus 383 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (667)
+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|...++...+.. +.+...+..+...+..
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 33444455556666666666665543 333 3355555566666666777776666665553 3456667777777778
Q ss_pred cCCHHHHHHHHhhCCCCCCC-cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 005966 462 CGSLESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLF 540 (667)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 540 (667)
.|++++|...|++.....|+ ...+..+...+.+.|++++|+..|++.++.. +.+...+..+...+...|++++|+..|
T Consensus 412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 88888888888877766654 4566677777888888888888888887752 224567777778888888888888888
Q ss_pred HHhHHhcCCC-C---ch-hHHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 005966 541 NFMLENHQTC-S---RA-DHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPT-HAVWGALLGACVIHGNVELGEVAAKWLFE 613 (667)
Q Consensus 541 ~~~~~~~~~~-~---~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 613 (667)
++..+...-. + +. ..++.....+...|++++|.+++++. ...|+ ...+..++..+...|++++|+..++++.+
T Consensus 491 ~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 491 DTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8877622110 0 10 01112222334468888888888875 45554 44677788888888888888888888888
Q ss_pred cCCCC
Q 005966 614 LEPEN 618 (667)
Q Consensus 614 ~~p~~ 618 (667)
+.+..
T Consensus 571 l~~~~ 575 (615)
T TIGR00990 571 LARTE 575 (615)
T ss_pred HhccH
Confidence 87753
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=4.6e-17 Score=175.97 Aligned_cols=123 Identities=11% Similarity=0.034 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhc
Q 005966 181 NTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKC 260 (667)
Q Consensus 181 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 260 (667)
.-.+......|+.++|++++.+..... ..+...+..+..++...|++++|..+++..++.. +.+...+..++.++...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 334445556677777777776665411 2222334555555555555555555555555442 22334444555555555
Q ss_pred CCHHHHHHHHhhcCC--C-ChhHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005966 261 GSVNEARLVFDRMSE--R-DVVTWTSMINGYALNGDVRNALGLFQLMQF 306 (667)
Q Consensus 261 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 306 (667)
|++++|...++++.+ | +.. +..+...+...|+.++|+..++++.+
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555443 2 222 44444555555555555555555544
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=3.1e-17 Score=177.34 Aligned_cols=398 Identities=9% Similarity=-0.000 Sum_probs=225.8
Q ss_pred HHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHh
Q 005966 214 SVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE---RDVVTWTSMINGYAL 290 (667)
Q Consensus 214 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 290 (667)
-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..+ .+...+..+...+..
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444445556666666666666665422 33344566666666666677766666666433 234455556666666
Q ss_pred CCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHH
Q 005966 291 NGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQV 370 (667)
Q Consensus 291 ~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 370 (667)
.|++++|+..+++..+. .|+...+..+..++...|+.+.|...++.+.+.. +.+..++..+...+...+..+.|+..
T Consensus 96 ~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 66666666666666554 2322224444444555555555555555555443 22233333344444444444444444
Q ss_pred HhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHH-----hCcCCH---HHHHHH
Q 005966 371 FARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPND------ATLNSLLPAY-----AILADL---QQAMNI 436 (667)
Q Consensus 371 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~-----~~~~~~---~~a~~~ 436 (667)
++.... .|+. .....++... ...+++ ++|++.
T Consensus 173 l~~~~~----------------------------------~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 173 IDDANL----------------------------------TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQ 218 (765)
T ss_pred HHhCCC----------------------------------CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence 444332 1111 0011111111 111222 556666
Q ss_pred HHHHHHh-CCCCCch-HHH-H---HHHHHHhcCCHHHHHHHHhhCCCCCCC-cc-hHHHHHHHHHHcCChHHHHHHHHHH
Q 005966 437 HCYLIRY-GFLSVVE-VST-G---LIDIYSKCGSLESAHKIFSEIPIKDKD-IV-VWSVIIAGYGMHGHGETAVSLFKEM 508 (667)
Q Consensus 437 ~~~~~~~-~~~~~~~-~~~-~---l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~m 508 (667)
++.+.+. ...|+.. .+. . .+..+...|++++|+..|+.+...+++ +. .-..+...+...|++++|+..|+++
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 6666543 1122211 111 1 122344567777777777777765422 11 1122455677777888888887777
Q ss_pred HHcCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----------CCCc---hhHHHHHHHHHhhcCChHHH
Q 005966 509 VQSGVQP---NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ----------TCSR---ADHYTCIVDLLGRAGRLDEA 572 (667)
Q Consensus 509 ~~~~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A 572 (667)
.+..... .......+..++...|++++|.++++.+.+... ..|+ ...+..++..+...|++++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 6543111 123345555567777888888888777766211 0122 12345566777788888888
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 573 YDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 573 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
+++++++ ...| +...+..++..+...|+.++|+..+++++++.|+++..+..++.++...|++++|.+.++++.+..
T Consensus 379 ~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 379 EMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 8888876 3344 566777777778888888888888888888888888888888888888888888888888877653
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=9.2e-18 Score=177.35 Aligned_cols=329 Identities=11% Similarity=-0.019 Sum_probs=269.0
Q ss_pred hHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCC---CCcccHHHHHHHHHh
Q 005966 315 TIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSK---KKTVPWNAILAGCVH 391 (667)
Q Consensus 315 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 391 (667)
-...++..+.+.|+.+.|..++.........+. .....++......|+++.|...|+++.. .+...|..+...+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 355667778889999999999999988775544 4444555666779999999999998863 344558888999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHH
Q 005966 392 NGLARKAVELFRQMLVEVVEPN-DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470 (667)
Q Consensus 392 ~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 470 (667)
.|++++|+..+++.... .|+ ...+..+...+...|++++|...++.+......+ ...+..+ ..+.+.|++++|..
T Consensus 123 ~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 123 SKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHH
Confidence 99999999999999874 444 5677788889999999999999999887765333 3333333 34788999999999
Q ss_pred HHhhCCCCCC--CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHHhH
Q 005966 471 IFSEIPIKDK--DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE----GLDLFNFML 544 (667)
Q Consensus 471 ~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~----A~~~~~~~~ 544 (667)
.++.+....| +...+..+..++...|++++|+..++++.+.. +.+...+..+...+...|++++ |...++++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9999876542 33444556778899999999999999999864 3356678888899999999986 899999998
Q ss_pred HhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchH
Q 005966 545 ENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNY 622 (667)
Q Consensus 545 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 622 (667)
+ ..|.+...+..++..+.+.|++++|+..+++. ...| +...+..+..++...|++++|+..++++++..|+++..+
T Consensus 278 ~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 278 Q--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred h--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 8 34456778999999999999999999999987 4556 456778888899999999999999999999999988777
Q ss_pred HHHHHHHhhcCCchHHHHHHHHhhhCCCc
Q 005966 623 VLLSKLYSAVRRWKDAENVRDVMDEKGLR 651 (667)
Q Consensus 623 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 651 (667)
..++.++...|++++|.+.+++..+...+
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 77899999999999999999998876544
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=3.5e-16 Score=165.40 Aligned_cols=441 Identities=10% Similarity=0.005 Sum_probs=291.1
Q ss_pred hccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCChh-hHHHH--HHHHHHcCChhHHH
Q 005966 121 CTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV-SWNTL--ISGYFKNAYAKEAL 197 (667)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l--i~~~~~~~~~~~A~ 197 (667)
..+.|++..|...|++..+..+.-...++ .++..+...|+.++|+..+++...++.. .+..+ ...+...|++++|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34677777888888777776522212334 6777777778888888888877665333 33333 44666778888888
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--
Q 005966 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-- 275 (667)
Q Consensus 198 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 275 (667)
++|+++.+. .|+ +...+..++..+...++.++|++.++++.+
T Consensus 123 ely~kaL~~--dP~----------------------------------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d 166 (822)
T PRK14574 123 ALWQSSLKK--DPT----------------------------------NPDLISGMIMTQADAGRGGVVLKQATELAERD 166 (822)
T ss_pred HHHHHHHhh--CCC----------------------------------CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence 888888773 443 455556677788888888888888888876
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHH
Q 005966 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355 (667)
Q Consensus 276 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 355 (667)
|+...+..++..+...++..+|++.++++.+.. +-+...+..+..++.+.|-...|.++... .|+..+-....
T Consensus 167 p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~ 239 (822)
T PRK14574 167 PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYR 239 (822)
T ss_pred cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHH
Confidence 444444333333334556656888999888753 22344556666666666666666655443 12111111110
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCC---hHHHHHHHHHHHHC-CCCCCHH-----HHHHHHHHHhC
Q 005966 356 DMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGL---ARKAVELFRQMLVE-VVEPNDA-----TLNSLLPAYAI 426 (667)
Q Consensus 356 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~-g~~p~~~-----~~~~ll~~~~~ 426 (667)
. =+.+.+.+.......+.. ....+ .+.|+.-++.+... +..|... ...=.+-++..
T Consensus 240 ~-----l~~~~~a~~vr~a~~~~~----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~ 304 (822)
T PRK14574 240 Q-----LERDAAAEQVRMAVLPTR----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV 304 (822)
T ss_pred H-----HHHHHHHHHHhhcccccc----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH
Confidence 0 001111111111100000 00111 24455555555432 2223221 11223456677
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------CCcchHHHHHHHHHHcCChH
Q 005966 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD-------KDIVVWSVIIAGYGMHGHGE 499 (667)
Q Consensus 427 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~ 499 (667)
.++..++++.++.+...+.+....+-..+.++|...+++++|..+|..+.... ++......|.-++...++++
T Consensus 305 r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~ 384 (822)
T PRK14574 305 RHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLD 384 (822)
T ss_pred hhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHH
Confidence 88888888888888888877677788888899999999999999998875532 12233467888899999999
Q ss_pred HHHHHHHHHHHcCC-----------CCCH--H-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhh
Q 005966 500 TAVSLFKEMVQSGV-----------QPNE--V-TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565 (667)
Q Consensus 500 ~a~~~~~~m~~~~~-----------~p~~--~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 565 (667)
+|..+++++.+.-+ .||. . .+..++..+...|++.+|++.++.+.. ..|-|......+.+.+..
T Consensus 385 ~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~ 462 (822)
T PRK14574 385 KAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLA 462 (822)
T ss_pred HHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 99999999887321 1232 2 344556678889999999999999977 566678889999999999
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchH
Q 005966 566 AGRLDEAYDLIRTM-PLKPT-HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNY 622 (667)
Q Consensus 566 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 622 (667)
.|.+.+|.+.++.. ...|+ ..+....+.++...|++++|....+++++..|+++.+-
T Consensus 463 Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 463 RDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred cCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 99999999999776 46664 55677788888899999999999999999999988554
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=2e-15 Score=138.42 Aligned_cols=443 Identities=12% Similarity=0.093 Sum_probs=285.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhc--cccchH-HHHHHHHHHHHhCCCCchHHHHH
Q 005966 75 SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACT--DLAWRK-LGIALHGRVLITGFDMDTFVGNC 151 (667)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ 151 (667)
+.+-|.|++. ..+|...++.-+|+.|.+. |++.+...-..+++..+ ...+.- .-++.|-.|...| ..+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 4466666654 4578899999999999998 77777766555554433 222222 2233344444444 2222232
Q ss_pred HHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHH
Q 005966 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231 (667)
Q Consensus 152 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 231 (667)
+.|+..+ ++-+...++..+|..||.++++--..+.|.+++++......+.+..+||.+|.+-+-..+
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~---- 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG---- 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----
Confidence 3454444 444555567789999999999999999999999999998899999999999988544333
Q ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 005966 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311 (667)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 311 (667)
+++..+|....+.||..|+|+++.+..+.|+++.|.+ .|++++.+|++.|+.|
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVeP 310 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEP 310 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCc
Confidence 7888999999999999999999999999998887754 3455666666666666
Q ss_pred ChhhHHHHHHHhhcccchHHH-HHHHHHHHH----hcC----CCCchHHhHHHHHHHhcCCHHHHHHHHhccCC------
Q 005966 312 NSLTIGSLLSACSSLYYLKRG-RSLHAWTIK----QNL----ECEVIVETALIDMYAKCNLVKLSFQVFARTSK------ 376 (667)
Q Consensus 312 ~~~t~~~ll~~~~~~~~~~~a-~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------ 376 (667)
...+|..+|..+++.++..+. ..+...+.. ..+ +.+...|..-+..|.+..+.+.|..+-.-...
T Consensus 311 sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ 390 (625)
T KOG4422|consen 311 SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF 390 (625)
T ss_pred chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh
Confidence 666666666666665555432 222222221 111 22334455555566666666666655443321
Q ss_pred --CC---cccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchH
Q 005966 377 --KK---TVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEV 451 (667)
Q Consensus 377 --~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 451 (667)
++ ..-|..+....++....+.-+.+|+.|.-.-.-|+..+...++++....+.++-..++|.++...|.......
T Consensus 391 ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l 470 (625)
T KOG4422|consen 391 IGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL 470 (625)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH
Confidence 11 1116667777888888999999999999888889999999999999999999999999999998885444433
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcc---hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005966 452 STGLIDIYSKCGSLESAHKIFSEIPIKDKDIV---VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528 (667)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 528 (667)
..-+...+++.. -. |+.. -+.....-|+ ..-.+.....-.+|.+....| ...+.++-.+.
T Consensus 471 ~eeil~~L~~~k-------------~h-p~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 471 REEILMLLARDK-------------LH-PLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDWPA--TSLNCIAILLL 533 (625)
T ss_pred HHHHHHHHhcCC-------------CC-CCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHH
Confidence 333333333222 10 2222 1111111111 111122222334555554443 34555555577
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCchhHHHH---HHHHHhhcCChHHHHHHHHhC
Q 005966 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTC---IVDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~ 579 (667)
+.|..++|.+++..+.+.+.--|-....++ +++.-.+..+...|..+++-|
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 888888888888888664444454444554 445556677888888888777
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=5.9e-15 Score=156.23 Aligned_cols=438 Identities=11% Similarity=0.003 Sum_probs=271.7
Q ss_pred hHhhhcCChhhHHHhhcccCCCCcc---hHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchH
Q 005966 52 SLVRAYGHVSNVRILFDEMSERSSF---LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128 (667)
Q Consensus 52 ~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 128 (667)
.+..+.|+++.|+..|.+..+.++. ....++..+...|+.++|+..+++.... .+........+...+...|+++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--CCCCHHHHHHHHHHHHHcCCHH
Confidence 5677889999999999887644332 1237888888889999999999988621 2222333333356777889999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCChh--hHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 005966 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVV--SWNTLISGYFKNAYAKEALVVFDWMLKS 206 (667)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~ 206 (667)
.|.++|+++.+.. +.++..+..++..|...++.++|++.++.+.+.+.. .+..++..+...++..+|++.++++.+.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999998887 445677778888888899999999999888665443 3333333333355665688888888874
Q ss_pred CCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHH-
Q 005966 207 GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-RDVVTWTSM- 284 (667)
Q Consensus 207 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l- 284 (667)
.|+ +...+..++..+.+.|-...|.++..+-+. -+...+.-+
T Consensus 199 --~P~----------------------------------n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~ 242 (822)
T PRK14574 199 --APT----------------------------------SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE 242 (822)
T ss_pred --CCC----------------------------------CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH
Confidence 454 333444444444555555555544444332 000000000
Q ss_pred ---HHHHH---------hCCCh---HHHHHHHHHHHhc-CCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCc
Q 005966 285 ---INGYA---------LNGDV---RNALGLFQLMQFE-GVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEV 348 (667)
Q Consensus 285 ---i~~~~---------~~~~~---~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 348 (667)
+.-.+ ...++ +.|+.-++.+... +-.|.....
T Consensus 243 ~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~-------------------------------- 290 (822)
T PRK14574 243 RDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQAD-------------------------------- 290 (822)
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchH--------------------------------
Confidence 00000 01111 2222222332221 111110000
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcC
Q 005966 349 IVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILA 428 (667)
Q Consensus 349 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 428 (667)
...+. --.+.++...++..++++.|+.|...|.+....+-..+..+|...+
T Consensus 291 -~~~~~----------------------------~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 291 -YQRAR----------------------------IDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred -HHHHH----------------------------HHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 00000 1123445556666777777777766665544456666667777777
Q ss_pred CHHHHHHHHHHHHHhC-----CCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-------------Cc---chHHH
Q 005966 429 DLQQAMNIHCYLIRYG-----FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-------------DI---VVWSV 487 (667)
Q Consensus 429 ~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~---~~~~~ 487 (667)
.+++|..++..+.... .+++......|..+|...+++++|..+++.+....| +. ..+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 7777777777665432 122333345667777777777777777776665322 11 23455
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcC
Q 005966 488 IIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567 (667)
Q Consensus 488 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 567 (667)
++..+...|+..+|.+.++++.... +-|......+.+.+...|.+.+|++.++.+.. ..+-+..+....+..+...|
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhh
Confidence 6777889999999999999998864 44777888899999999999999999977765 34445667778888899999
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHH
Q 005966 568 RLDEAYDLIRTM-PLKPTHAVWGALL 592 (667)
Q Consensus 568 ~~~~A~~~~~~~-~~~p~~~~~~~l~ 592 (667)
++++|..+.+++ ...|+......+-
T Consensus 499 e~~~A~~~~~~l~~~~Pe~~~~~~l~ 524 (822)
T PRK14574 499 EWHQMELLTDDVISRSPEDIPSQELD 524 (822)
T ss_pred hHHHHHHHHHHHHhhCCCchhHHHHH
Confidence 999999988777 4555544444433
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.1e-17 Score=154.07 Aligned_cols=494 Identities=13% Similarity=0.098 Sum_probs=295.5
Q ss_pred CCCCCCCCCChhHHHHHHHHhhccCChhhHhHHHHHHHHhCCCc--hhhh-h--hHhhhcCChhhHHHhhcc----cCCC
Q 005966 3 GPSHHTLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF--THLR-S--SLVRAYGHVSNVRILFDE----MSER 73 (667)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~-~--~~~~~~g~~~~A~~~~~~----~~~~ 73 (667)
.|...-+..+.++++++++.|.......+|...|+.+++..-.+ ..+. | ++|.+...+.+|++.+.- +|.-
T Consensus 191 ~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsi 270 (840)
T KOG2003|consen 191 LPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSI 270 (840)
T ss_pred chhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcccc
Confidence 34555567788999999999999999999999999999876433 2222 2 899999999999997753 3332
Q ss_pred C----cchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHH
Q 005966 74 S----SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVG 149 (667)
Q Consensus 74 ~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 149 (667)
+ +...+.+...+.+.|++++|+..|+...+. .|+..+-..++-++...|+.+..++.|..|+.....||..-|
T Consensus 271 nk~~rikil~nigvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky 347 (840)
T KOG2003|consen 271 NKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY 347 (840)
T ss_pred chhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc
Confidence 2 235666666788999999999999999976 678777666666667788999999999999877655554322
Q ss_pred HHHHHHHHhcCCHHHHHHHhcccCCCChhhHHH-----HHHHHHHcCC--hhHHHHHHHHHHHCCCCCChHHHHHHHHHc
Q 005966 150 NCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNT-----LISGYFKNAY--AKEALVVFDWMLKSGVEPDCASVVSVLPAC 222 (667)
Q Consensus 150 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 222 (667)
-. ...+ |+....|. .+.-+-+.++ .++++-.--++..--+.||-..
T Consensus 348 i~------~~dd-------------p~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~-------- 400 (840)
T KOG2003|consen 348 IK------EKDD-------------PDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA-------- 400 (840)
T ss_pred cC------CcCC-------------cchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc--------
Confidence 10 0111 11111111 1111111111 1222222222222222332100
Q ss_pred ccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHH
Q 005966 223 GYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQ 302 (667)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 302 (667)
.- ...++.++.+ ...+-|.++ . -.-...+.++|+++.|+++++
T Consensus 401 --g~-----dwcle~lk~s-------------------~~~~la~dl---------e--i~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 401 --GC-----DWCLESLKAS-------------------QHAELAIDL---------E--INKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred --cc-----HHHHHHHHHh-------------------hhhhhhhhh---------h--hhHHHHHHhccCHHHHHHHHH
Confidence 00 0001111110 000101000 0 001123445555555555555
Q ss_pred HHHhcCCCCChhhHHHH--HHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcc
Q 005966 303 LMQFEGVRPNSLTIGSL--LSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380 (667)
Q Consensus 303 ~m~~~~~~p~~~t~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 380 (667)
-+....-+.-+..-+.| +.-+.-..++..|.+.-+..+... -|+.- +....|
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d------ryn~~--a~~nkg------------------ 497 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID------RYNAA--ALTNKG------------------ 497 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc------ccCHH--HhhcCC------------------
Confidence 55432211111000000 000000111111111111111000 00000 000000
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 005966 381 PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS 460 (667)
Q Consensus 381 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (667)
......|++++|.+.|++..... ..+.. ..|+ +.-.+.
T Consensus 498 ------n~~f~ngd~dka~~~ykeal~nd----asc~e-------------------------------alfn-iglt~e 535 (840)
T KOG2003|consen 498 ------NIAFANGDLDKAAEFYKEALNND----ASCTE-------------------------------ALFN-IGLTAE 535 (840)
T ss_pred ------ceeeecCcHHHHHHHHHHHHcCc----hHHHH-------------------------------HHHH-hcccHH
Confidence 01123567777777777665432 11111 1111 122344
Q ss_pred hcCCHHHHHHHHhhCCCCC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 005966 461 KCGSLESAHKIFSEIPIKD-KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539 (667)
Q Consensus 461 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 539 (667)
..|++++|++.|-++...- .+..+.-.+...|....+..+|++++.+.... ++.|+..+..|...|-+.|+-..|.+.
T Consensus 536 ~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~ 614 (840)
T KOG2003|consen 536 ALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQC 614 (840)
T ss_pred HhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhh
Confidence 5666677776665543322 45566667778888888999999999888775 455677889999999999999999998
Q ss_pred HHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHhhccCCC
Q 005966 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHAVWGALLGACV-IHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~p~ 617 (667)
+..--+ -++.+.++...|..-|....-+++|+.+|++. -+.|+..-|..++..|. +.|++.+|...++...+..|+
T Consensus 615 ~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 615 HYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE 692 (840)
T ss_pred hhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 877655 67778999999999999999999999999998 48999999998887765 579999999999999999999
Q ss_pred CCchHHHHHHHHhhcCC
Q 005966 618 NPGNYVLLSKLYSAVRR 634 (667)
Q Consensus 618 ~~~~~~~l~~~~~~~g~ 634 (667)
|..++..|+.++...|-
T Consensus 693 dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 693 DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred chHHHHHHHHHhccccc
Confidence 99999999999888774
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=9.6e-15 Score=146.66 Aligned_cols=590 Identities=12% Similarity=0.037 Sum_probs=390.8
Q ss_pred hHhhhcCChhhHHHhhcccCCC---CcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchH
Q 005966 52 SLVRAYGHVSNVRILFDEMSER---SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128 (667)
Q Consensus 52 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 128 (667)
+.....|+.++|.+++.++... +..+|.+|...|-..|+.++++..+-.+-.. .+.|...|..+.....+.|++.
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHH
Confidence 3344449999999999998543 6679999999999999999999988887765 5567788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCCh----hhH----HHHHHHHHHcCChhHHHHHH
Q 005966 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSV----VSW----NTLISGYFKNAYAKEALVVF 200 (667)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~----~~li~~~~~~~~~~~A~~~~ 200 (667)
.|.-+|.++++.. +++...+-.-...|-+.|+...|...|.++.+.++ .-. -..+..+...++.+.|++.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999998 66666666678899999999999998888754322 212 23455667778889999998
Q ss_pred HHHHHC-CCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhc---------------------------CCCcchhHHHH
Q 005966 201 DWMLKS-GVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG---------------------------RLGKNIAAWNA 252 (667)
Q Consensus 201 ~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~~~~~~~ 252 (667)
+..... +-.-+...++.+...+.+...++.+......+... ++.++..+ -.
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IR 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-Hh
Confidence 888662 22234445666666677777777777666655551 12223333 12
Q ss_pred HHHHHHh--cCCHHHHHHHHhhcCC----CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcc
Q 005966 253 LVDMYVK--CGSVNEARLVFDRMSE----RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL 326 (667)
Q Consensus 253 l~~~~~~--~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 326 (667)
++-++.+ .+...+++.-|..... .++..|--+..++...|++.+|+++|..+......-+...|..+..++-..
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2223333 3444444444333222 345678888899999999999999999998765555667788888889999
Q ss_pred cchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCccc------------HHHHHHHHHhCCC
Q 005966 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVP------------WNAILAGCVHNGL 394 (667)
Q Consensus 327 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------------~~~li~~~~~~~~ 394 (667)
|..+.|...+..++... +.+..+-..|...+-+.|+.++|.+.+..+..+|... --.....+.+.|+
T Consensus 463 ~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 99999999999888765 4556667788888999999999999999988666332 1223455667788
Q ss_pred hHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHhCcCCHHHHHHHHHH------HHHhCCC
Q 005966 395 ARKAVELFRQMLVEV----------------------VEPNDATLNSLLPAYAILADLQQAMNIHCY------LIRYGFL 446 (667)
Q Consensus 395 ~~~A~~~~~~m~~~g----------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~------~~~~~~~ 446 (667)
.++=+.+...|.... .+....+...++.+-.+.++......-... ....++.
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls 621 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS 621 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence 777555555444321 111222233333343343332222221111 1112222
Q ss_pred CCc--hHHHHHHHHHHhcCCHHHHHHHHhhCCCCC----CCc---chHHHHHHHHHHcCChHHHHHHHHHHHHc-CC--C
Q 005966 447 SVV--EVSTGLIDIYSKCGSLESAHKIFSEIPIKD----KDI---VVWSVIIAGYGMHGHGETAVSLFKEMVQS-GV--Q 514 (667)
Q Consensus 447 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~--~ 514 (667)
.+. ..+.-++..+++.+++++|..+...+.... ++. ..-...+.+.+..+++..|...++.|... +. .
T Consensus 622 iddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~ 701 (895)
T KOG2076|consen 622 IDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLD 701 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhh
Confidence 221 355667888899999999999988776643 111 23345667778889999999999998864 11 2
Q ss_pred CCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCc--hhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 005966 515 PNE-VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR--ADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHAVWGA 590 (667)
Q Consensus 515 p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 590 (667)
|.. ..|+...+...+.++-.--.+++..+.. .+|+ .......+..+..++.+..|+..+-+. ...||....+.
T Consensus 702 ~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~---~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl 778 (895)
T KOG2076|consen 702 VYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV---KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINL 778 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHH
Confidence 222 3455455555555554444444444332 1122 222222334456788899998876665 45566444333
Q ss_pred HHHH-HH----------hcCCHHHHHHHHHHhhccCCC--CCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 591 LLGA-CV----------IHGNVELGEVAAKWLFELEPE--NPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 591 l~~~-~~----------~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
++.. +. ++-..-.+..++++..++... --.+.+.+|.+|-..|-..-|..++++..+-.
T Consensus 779 ~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 779 CLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 3322 21 122345667777777665533 46789999999999999999999999988764
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.80 E-value=6.4e-14 Score=135.41 Aligned_cols=540 Identities=13% Similarity=0.049 Sum_probs=398.0
Q ss_pred CCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 005966 89 GASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKV 168 (667)
Q Consensus 89 g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 168 (667)
++..+|..++....+. .|.+...|.+-.+.=-..|.+..|..+...--+.- +.+..+|--- ++....+.|..+
T Consensus 265 ~DikKaR~llKSvret--nP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLea----iRLhp~d~aK~v 337 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRET--NPKHPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLEA----IRLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHhc--CCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHHH----HhcCChHHHHHH
Confidence 3567788888888876 45555666666655556677777766654444332 3333333322 234445555555
Q ss_pred hcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchh
Q 005966 169 FDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIA 248 (667)
Q Consensus 169 ~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 248 (667)
.....+..+.+-..-+.+---..+...=.+++++.++. ++-++..|.. .....+.+.|+.++..+.+. ++.+..
T Consensus 338 vA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~s~d 411 (913)
T KOG0495|consen 338 VANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQSMD 411 (913)
T ss_pred HHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccchHH
Confidence 54443322222222222222223334445566666663 3333334433 34456666688888888875 233444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHH----HHhcCCCCChhhHHHHHH
Q 005966 249 AWNALVDMYVKCGSVNEARLVFDRMSE---RDVVTWTSMINGYALNGDVRNALGLFQL----MQFEGVRPNSLTIGSLLS 321 (667)
Q Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~t~~~ll~ 321 (667)
.|. +|.+..-++.|.+++....+ .+...|-+-...--.+|+.+...+++++ +...|+..+...+..=..
T Consensus 412 Lwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe 487 (913)
T KOG0495|consen 412 LWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE 487 (913)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence 444 45566778888888887765 5667776666666678888888887765 445788889888888888
Q ss_pred HhhcccchHHHHHHHHHHHHhcCCCC--chHHhHHHHHHHhcCCHHHHHHHHhccCC---CCcccHHHHHHHHHhCCChH
Q 005966 322 ACSSLYYLKRGRSLHAWTIKQNLECE--VIVETALIDMYAKCNLVKLSFQVFARTSK---KKTVPWNAILAGCVHNGLAR 396 (667)
Q Consensus 322 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 396 (667)
+|-..|..-.+..+....+..|+... ..++..-.+.|.+.+.++-|+.+|....+ .+...|......--..|..+
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHH
Confidence 89889999999999998888887543 46788888899999999999999987663 33444777777777789999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005966 397 KAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476 (667)
Q Consensus 397 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (667)
+-..+|++.... ++-...-+......+-..|+...|+.++....+.. +.+..++-.-+........+++|..+|.+..
T Consensus 568 sl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar 645 (913)
T KOG0495|consen 568 SLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKAR 645 (913)
T ss_pred HHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHh
Confidence 999999999875 34445556666677778899999999999998877 5588889999999999999999999999998
Q ss_pred CCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhH
Q 005966 477 IKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV-TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH 555 (667)
Q Consensus 477 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 555 (667)
...|....|.--+....-.++.++|++++++.++. -|+.. .|..+...+.+.++.+.|...|..-.+ ..|-.+..
T Consensus 646 ~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipL 721 (913)
T KOG0495|consen 646 SISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPL 721 (913)
T ss_pred ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchH
Confidence 88899999998888888899999999999999885 56765 577777888999999999999887766 55555678
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC----------------
Q 005966 556 YTCIVDLLGRAGRLDEAYDLIRTMP--LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE---------------- 617 (667)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---------------- 617 (667)
|-.|.+.-.+.|.+-+|..++++.. .+-+...|...++.-.+.|+.+.|...+-++++.-|.
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcc
Confidence 8889999999999999999999984 3347788999999999999999999998888765554
Q ss_pred --------------CCchHHHHHHHHhhcCCchHHHHHHHHhhhCCCc
Q 005966 618 --------------NPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651 (667)
Q Consensus 618 --------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 651 (667)
||.++...+.++....++++|++.|++..+.+..
T Consensus 802 rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 802 RKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred cchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 4557778888999999999999999998887644
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=4.5e-15 Score=136.08 Aligned_cols=361 Identities=12% Similarity=0.088 Sum_probs=223.2
Q ss_pred ccCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHH
Q 005966 69 EMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFV 148 (667)
Q Consensus 69 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 148 (667)
+...+...+|.+||.++++-...++|.++|++.... ..+.+..+||.+|.+-. +...+++..+|......||..|
T Consensus 201 E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~T 275 (625)
T KOG4422|consen 201 ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFT 275 (625)
T ss_pred hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHh
Confidence 333445566777777777776777777777776665 45666667777665543 2223566667777666777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcch
Q 005966 149 GNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEI 228 (667)
Q Consensus 149 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 228 (667)
+|+++++.++.|+++.|. ..|++++.+|++.|+.|...+|..+|..+++.++.
T Consensus 276 fNalL~c~akfg~F~~ar---------------------------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDAR---------------------------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred HHHHHHHHHHhcchHHHH---------------------------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc
Confidence 777777777777666665 33567778888888888888888888887777766
Q ss_pred HH-HHHHHHHHHhc----CCC----cchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------CC---hhHHHHHHHHH
Q 005966 229 EM-GRMIHELVAGG----RLG----KNIAAWNALVDMYVKCGSVNEARLVFDRMSE--------RD---VVTWTSMINGY 288 (667)
Q Consensus 229 ~~-a~~~~~~~~~~----~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~ 288 (667)
.+ +..+...+... .+. .|...+..-+..|.+..+.+-|.++-.-+.. ++ ..-|..+....
T Consensus 329 ~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~li 408 (625)
T KOG4422|consen 329 QKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLI 408 (625)
T ss_pred hhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHH
Confidence 44 33344443331 122 2444566667777777777777776655443 11 22355666677
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHH
Q 005966 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368 (667)
Q Consensus 289 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 368 (667)
+.....+.-...|+.|.-.-.-|+..+...++++....+.++-.-++|..++..|...+...
T Consensus 409 cq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l------------------ 470 (625)
T KOG4422|consen 409 CQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL------------------ 470 (625)
T ss_pred HHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH------------------
Confidence 77788888889999998777788889999999998888888888888888877664322221
Q ss_pred HHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhCcCCHHHH-HHHHHHHHHhC
Q 005966 369 QVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA---TLNSLLPAYAILADLQQA-MNIHCYLIRYG 444 (667)
Q Consensus 369 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~ 444 (667)
-.+++..|.+....|+.. -+.....-|. -++.++ ...-.++.+.
T Consensus 471 -----------------------------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~- 518 (625)
T KOG4422|consen 471 -----------------------------REEILMLLARDKLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQ- 518 (625)
T ss_pred -----------------------------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhc-
Confidence 223333343333333322 1211111110 011111 1111223323
Q ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---CCcchHHH---HHHHHHHcCChHHHHHHHHHHHHcC
Q 005966 445 FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD---KDIVVWSV---IIAGYGMHGHGETAVSLFKEMVQSG 512 (667)
Q Consensus 445 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~ 512 (667)
..+....+..+-.+.+.|+.++|.++|.-+...+ |.....|+ ++..-.+.+...+|+..++-|...+
T Consensus 519 -~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 519 -DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred -cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 3444566777777888888888888887774443 44444553 4445566677777887777776654
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=3.5e-14 Score=131.19 Aligned_cols=437 Identities=13% Similarity=0.075 Sum_probs=296.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHH-HHHHcccCcchHHHHHHHHHHHhcCCCcch----hHHHHHHHH
Q 005966 182 TLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVS-VLPACGYLKEIEMGRMIHELVAGGRLGKNI----AAWNALVDM 256 (667)
Q Consensus 182 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~ 256 (667)
.|..-|..+....+|+..++-+.+....|+...... +-+.+.+.+++.+|.+.+...+..-...+. ...+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 345566667778889999988888888887665432 334467788888999998888765333332 344455556
Q ss_pred HHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHH--------HHHHHhhcc
Q 005966 257 YVKCGSVNEARLVFDRMSE--RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG--------SLLSACSSL 326 (667)
Q Consensus 257 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~--------~ll~~~~~~ 326 (667)
+.+.|+++.|+..|+...+ |+..+--.|+-++..-|+.++..+.|.+|..-...||..-|. .|+.-..+.
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 7889999999999998776 776664455556667889999999999998765445544331 111111111
Q ss_pred cchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHH----HHHhccCCCCccc---HH----------------
Q 005966 327 YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF----QVFARTSKKKTVP---WN---------------- 383 (667)
Q Consensus 327 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~----~~~~~~~~~~~~~---~~---------------- 383 (667)
..+ +.|.+.+ + .+.++++ +++.-...++... |.
T Consensus 366 d~l-------k~~ek~~-k----------------a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dl 421 (840)
T KOG2003|consen 366 DHL-------KNMEKEN-K----------------ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDL 421 (840)
T ss_pred HHH-------HHHHHhh-h----------------hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhh
Confidence 111 1111110 0 0111111 1111111221111 11
Q ss_pred --HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 005966 384 --AILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY--AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459 (667)
Q Consensus 384 --~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (667)
.-...+.++|+++.|+++++-+....-+.-+..-+.|...+ ....++..|.++-+...... ..+....+.-.+.-
T Consensus 422 ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 422 EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIA 500 (840)
T ss_pred hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCcee
Confidence 12345788999999999999887664443333333332222 22446777777766655432 22333333333444
Q ss_pred HhcCCHHHHHHHHhhCCCCCCCcchHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHH
Q 005966 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVII---AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEG 536 (667)
Q Consensus 460 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A 536 (667)
...|++++|.+.|++... .|...-.+|. -.+...|+.++|+..|-++... +..+...+..+.+.|....+...|
T Consensus 501 f~ngd~dka~~~ykeal~--ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALN--NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred eecCcHHHHHHHHHHHHc--CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHH
Confidence 567999999999999887 4444333333 3467889999999999887664 244667788888899999999999
Q ss_pred HHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHh-CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 005966 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT-MP-LKPTHAVWGALLGACVIHGNVELGEVAAKWLFEL 614 (667)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 614 (667)
++++.+... .++.|+.+..-|.+.|-+.|+-.+|++..-. .. .+.+..+...|...|....-.++|+..|+++--+
T Consensus 578 ie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 578 IELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 999988876 7777888999999999999999999998554 45 4447888888888899999999999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 615 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
.|........++.++.+.|+|++|..+++...++
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9997777777888899999999999999987654
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=4.1e-17 Score=155.53 Aligned_cols=258 Identities=18% Similarity=0.155 Sum_probs=114.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCC
Q 005966 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNS-LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGS 464 (667)
Q Consensus 386 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 464 (667)
...+.+.|++++|++++++......+|+...|.. +...+...++++.|...++.+...+ +-++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 4455566777777777755443332344444433 3334455677777777777777655 2355566677776 68899
Q ss_pred HHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 005966 465 LESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG-VQPNEVTFTSALHACSHGGLLDEGLDLFNFM 543 (667)
Q Consensus 465 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 543 (667)
+++|.+++....+..++...+..++..+.+.++++++..+++++.... ..++...|..+...+.+.|+.++|.+.++++
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999988876666778888889999999999999999999987643 2456677888888899999999999999999
Q ss_pred HHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCch
Q 005966 544 LENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP--LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGN 621 (667)
Q Consensus 544 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 621 (667)
.+ ..|.|......++..+...|+.+++.++++... .+.|+..+..+..++...|+.++|...++++.+..|+|+..
T Consensus 173 l~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 173 LE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 98 343457778899999999999999888887762 34566788999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 622 YVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 622 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
...++.++...|+.++|.++++++.+
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988654
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=3.6e-13 Score=126.02 Aligned_cols=216 Identities=15% Similarity=0.105 Sum_probs=176.4
Q ss_pred hCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHH
Q 005966 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVS 503 (667)
Q Consensus 425 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 503 (667)
.-.|+.-.+..-|+..++.... +...|--+..+|....+.++-...|+.....+| ++.+|..-.....-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3467888888888888876633 333377777889999999999999999888774 67788888888888899999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CC
Q 005966 504 LFKEMVQSGVQPN-EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PL 581 (667)
Q Consensus 504 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 581 (667)
=|++.++. .|+ ...|..+.-+..+.+++++++..|++.++ .+|.-++.|+....++..++++++|.+.|+.. .+
T Consensus 416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999985 444 45677777777789999999999999998 56566778999999999999999999999987 45
Q ss_pred CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 582 KPT---------HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 582 ~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
.|+ +.+...++..- -.+|+..|+.++.++.+++|.-..++..|+.+-...|+.++|+++|++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 554 22233333333 34999999999999999999999999999999999999999999999754
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4e-11 Score=112.08 Aligned_cols=466 Identities=11% Similarity=0.057 Sum_probs=285.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 005966 75 SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIA 154 (667)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 154 (667)
...|---.+-=...+++..|.++|++.+.. ..-+...|..-+..=.+...+..|..++++.+..-+..|..-| ..+-
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~y 149 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYIY 149 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHHH
Confidence 334444444444456667777777777754 3445555666666666777777777777777766433333332 2333
Q ss_pred HHHhcCCHHHHHHHhccc--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHH
Q 005966 155 MYMNFGEVKAARKVFDAM--WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGR 232 (667)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 232 (667)
+=-..|++..|.++|+.. .+|+..+|++.|..=.+-+.++.|..++++..- +.|+..+|.--.+.=.+.|....++
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHH
Confidence 334457777777777655 456777777777777777777777777777665 4566666666666555666666666
Q ss_pred HHHHHHHhcCCC--cchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCC
Q 005966 233 MIHELVAGGRLG--KNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVR 310 (667)
Q Consensus 233 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 310 (667)
.+++.+++.--. .+...+.+....=.+ +..++.|.-+|+-..+. +
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~-------------------------------qkE~ERar~iykyAld~-~- 274 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEER-------------------------------QKEYERARFIYKYALDH-I- 274 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHh-c-
Confidence 666555442100 011112222222222 22333333333333322 1
Q ss_pred CChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHH--------HHhccCCC---Cc
Q 005966 311 PNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQ--------VFARTSKK---KT 379 (667)
Q Consensus 311 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--------~~~~~~~~---~~ 379 (667)
|...+ ...|..+...--+.|+.....+ -++.+... |-
T Consensus 275 pk~ra--------------------------------eeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nY 322 (677)
T KOG1915|consen 275 PKGRA--------------------------------EELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNY 322 (677)
T ss_pred CcccH--------------------------------HHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCc
Confidence 11100 0111111111111121111111 11222222 33
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---hCcCCHHHHHHHHHHHHHhCCCCCc
Q 005966 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDA-------TLNSLLPAY---AILADLQQAMNIHCYLIRYGFLSVV 449 (667)
Q Consensus 380 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~ 449 (667)
.+|--.+..-...|+.+...++|++.... ++|-.. .|.-+=-+| ....+++.+.++++..++ -+|...
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkk 400 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKK 400 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCccc
Confidence 34666666666778888888888888764 555321 121111111 346788899999988887 345666
Q ss_pred hHHHHHHHHH----HhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005966 450 EVSTGLIDIY----SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525 (667)
Q Consensus 450 ~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 525 (667)
.+|.-+--+| .++.++..|.+++.......|...+|...|..-.+.++++.+..+|++.++-+ +-|..+|.....
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAE 479 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHH
Confidence 6666654444 46788999999999888877888999999999999999999999999999975 336678888777
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC
Q 005966 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHAVWGALLGACV-----IHG 599 (667)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-----~~g 599 (667)
.-...|+.+.|..+|+-++...........|.+.|+.-...|.+++|..+++++ ...+...+|-++...-. ..+
T Consensus 480 lE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~ 559 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQED 559 (677)
T ss_pred HHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccc
Confidence 777889999999999998875444444557888888888999999999999987 33444446666655433 334
Q ss_pred -----------CHHHHHHHHHHhhc
Q 005966 600 -----------NVELGEVAAKWLFE 613 (667)
Q Consensus 600 -----------~~~~A~~~~~~~~~ 613 (667)
+...|..+|+++..
T Consensus 560 ~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 560 EDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cchhhhhcchhHHHHHHHHHHHHHH
Confidence 56788888888764
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=8e-12 Score=116.44 Aligned_cols=254 Identities=14% Similarity=0.079 Sum_probs=199.2
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHhcCC
Q 005966 387 AGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF--LSVVEVSTGLIDIYSKCGS 464 (667)
Q Consensus 387 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 464 (667)
.++......+++.+-.......|+.-+...-+....+.....|+++|+.+|+++.++.. -.|..+|+.++..-..+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 44444456777777777777777766666655566666778889999999998887742 1245666665543332222
Q ss_pred HH-HHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHH
Q 005966 465 LE-SAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE-VTFTSALHACSHGGLLDEGLDLFNF 542 (667)
Q Consensus 465 ~~-~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~ 542 (667)
+. -|..+++- -+ -.+.|.-++.+-|.-.++.++|..+|++.++.+ |.. ..|..+..-|....+...|.+-++.
T Consensus 315 Ls~LA~~v~~i-dK--yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 315 LSYLAQNVSNI-DK--YRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHHh-cc--CCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 22 12222221 11 345566677788888899999999999999964 444 5677777889999999999999999
Q ss_pred hHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCc
Q 005966 543 MLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620 (667)
Q Consensus 543 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 620 (667)
+++ -.|.|-..|-.|+.+|.-.+...=|+-.|++. ..+| |+..|.+|+.+|.+.++.++|+..|++++..+..+..
T Consensus 390 Avd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 390 AVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 998 56678889999999999999999999999998 5777 8889999999999999999999999999999888889
Q ss_pred hHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 621 NYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
++..|+++|.+.++.++|...+++..+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999998765
No 39
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.62 E-value=4e-11 Score=120.51 Aligned_cols=628 Identities=11% Similarity=0.017 Sum_probs=328.2
Q ss_pred CCCCChhHHHHHHHHhhccCChhhHhHHHHHHHH-hCCCchhhhh---hHhhhcCChhhHHHhhcccCCCCcchHHHHHH
Q 005966 8 TLPKTTHLVIKLVQQYAATKSIAGTKQLHAFIIT-SGPLFTHLRS---SLVRAYGHVSNVRILFDEMSERSSFLYNTVMK 83 (667)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 83 (667)
++-|+...|.+++..|+..|+++.|- ++..+-. +-|...-+.+ ......|+.+.+. .|.+.+|..|..
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ 91 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLK 91 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHH
Confidence 45677889999999999999999988 7776543 3333311122 2223334444433 677889999999
Q ss_pred HHHhCCCchHHHHHHHH----hHHc---CCCCCCcccHHHHHHHhcccc-c------hHHHHHHHHHHHHhCC-CCchHH
Q 005966 84 MYAQNGASHDSLKMFLG----MLRL---GEYNPDNYTYPIVIKACTDLA-W------RKLGIALHGRVLITGF-DMDTFV 148 (667)
Q Consensus 84 ~~~~~g~~~~a~~~~~~----~~~~---~~~~~~~~~~~~ll~~~~~~~-~------~~~a~~~~~~~~~~~~-~~~~~~ 148 (667)
+|.++||... ++..++ +..+ -|+.....-+-..+++|-..- + ..--+.++..+++.+. .|....
T Consensus 92 ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~ 170 (1088)
T KOG4318|consen 92 AYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW 170 (1088)
T ss_pred HHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence 9999999654 333333 2221 011111112222222221110 0 1111123333333331 121111
Q ss_pred HHHH---HHHHHh-cCCHHHHHHHhcccCC-CChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcc
Q 005966 149 GNCL---IAMYMN-FGEVKAARKVFDAMWE-HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACG 223 (667)
Q Consensus 149 ~~~l---i~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 223 (667)
++.. ++-... ...+++-........+ ++..+|..++..-.-+|+.+.|..++.+|++.|+..+..-|-.++-+
T Consensus 171 ~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g-- 248 (1088)
T KOG4318|consen 171 NAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG-- 248 (1088)
T ss_pred cchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc--
Confidence 1111 111111 1234444444444444 78889999999999999999999999999999998888877777766
Q ss_pred cCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCh-----HHHH
Q 005966 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV-----RNAL 298 (667)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~-----~~a~ 298 (667)
.++...+..++..|...|+.|+..|+...+-.+...|....+....+.-.--....+..+..+...+.+. .-..
T Consensus 249 -~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~ 327 (1088)
T KOG4318|consen 249 -INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVI 327 (1088)
T ss_pred -CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 7888888889999999999999999888777777655433222111100000111122222111111111 0111
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcC---CCCchHHhHHHHHHHhc--------------
Q 005966 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL---ECEVIVETALIDMYAKC-------------- 361 (667)
Q Consensus 299 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~-------------- 361 (667)
..+.+..-.|+......|...... ...|.-+...++-..+..-.. ..++..+..++.-|.+.
T Consensus 328 ~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~q 406 (1088)
T KOG4318|consen 328 GSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQ 406 (1088)
T ss_pred HHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 111111111222111111111111 112222222222222211100 00111111111111111
Q ss_pred --------CCHHHHHHHHhccC----------------CCCccc-----------HHHHHHHHHhCCChHHHHHHHHHHH
Q 005966 362 --------NLVKLSFQVFARTS----------------KKKTVP-----------WNAILAGCVHNGLARKAVELFRQML 406 (667)
Q Consensus 362 --------g~~~~a~~~~~~~~----------------~~~~~~-----------~~~li~~~~~~~~~~~A~~~~~~m~ 406 (667)
....+..++..... .+...+ -+.++..|++.-+..+++..-+...
T Consensus 407 gls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye 486 (1088)
T KOG4318|consen 407 GLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYE 486 (1088)
T ss_pred HHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111111 111111 2344445555555555554333333
Q ss_pred HCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---CC
Q 005966 407 VEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR--YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD---KD 481 (667)
Q Consensus 407 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~ 481 (667)
..-+. ..|..++.-++.....+.|..+.+++.. ..+..+...+..+.+.+.+.+...++..++.++.+.- |.
T Consensus 487 ~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~ 563 (1088)
T KOG4318|consen 487 DLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPL 563 (1088)
T ss_pred HHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCch
Confidence 22111 5678888889999999999998888753 3345677788889999999999999999998887642 21
Q ss_pred -cchHHHHHHHHHHcCChHHHHHHHHHHHHcCC------------------------------CCCHHHHHHHHHHHh--
Q 005966 482 -IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV------------------------------QPNEVTFTSALHACS-- 528 (667)
Q Consensus 482 -~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~------------------------------~p~~~~~~~ll~~~~-- 528 (667)
..++--++...+..|+.+...++++-+...|+ +|.+.....+.+.+.
T Consensus 564 ~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke 643 (1088)
T KOG4318|consen 564 VAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKE 643 (1088)
T ss_pred HHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhh
Confidence 22334455555666666666665555544332 233322222222222
Q ss_pred ccCCHHHHHHHHHHhH---H------------hcCCC---------------C---------chhHHHHHHHHHhhcCCh
Q 005966 529 HGGLLDEGLDLFNFML---E------------NHQTC---------------S---------RADHYTCIVDLLGRAGRL 569 (667)
Q Consensus 529 ~~g~~~~A~~~~~~~~---~------------~~~~~---------------~---------~~~~~~~l~~~~~~~g~~ 569 (667)
...+++.+..+-..+. + ..|.. | +.....-|+..|.+.|++
T Consensus 644 ~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~ 723 (1088)
T KOG4318|consen 644 TTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRI 723 (1088)
T ss_pred ccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHH
Confidence 1122222222211111 0 00100 0 000122366788899999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhhccCCCCCc---hHHHHHHHHhhcCCchHHHHHHH
Q 005966 570 DEAYDLIRTMPLKPTHAVWGALLGACVIH---GNVELGEVAAKWLFELEPENPG---NYVLLSKLYSAVRRWKDAENVRD 643 (667)
Q Consensus 570 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~ 643 (667)
+.|..++.+++..|++.+...++..+.+. -|+-++....+++.++.|..+. .+...+.+..+..+.+.|.+.|+
T Consensus 724 erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~ 803 (1088)
T KOG4318|consen 724 ERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFE 803 (1088)
T ss_pred HHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHH
Confidence 99999999999888888888787777654 3677777888888777765443 34444445555555668888999
Q ss_pred HhhhCCCc
Q 005966 644 VMDEKGLR 651 (667)
Q Consensus 644 ~~~~~~~~ 651 (667)
+..++...
T Consensus 804 r~eeq~~v 811 (1088)
T KOG4318|consen 804 RLEEQLTV 811 (1088)
T ss_pred HHHHccCC
Confidence 98887543
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=7.7e-14 Score=135.98 Aligned_cols=282 Identities=13% Similarity=0.002 Sum_probs=224.4
Q ss_pred CHHHHHHHHhccCCC--Cc-ccHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhCcCCHHHHHHHH
Q 005966 363 LVKLSFQVFARTSKK--KT-VPWNAILAGCVHNGLARKAVELFRQMLVEV--VEPNDATLNSLLPAYAILADLQQAMNIH 437 (667)
Q Consensus 363 ~~~~a~~~~~~~~~~--~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 437 (667)
+.++|...|..+... |. .....+..+|...+++++|..+|+.+.+.. ..-+..+|.+.+.-+-+.- +--.+-
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v---~Ls~La 410 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV---ALSYLA 410 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH---HHHHHH
Confidence 456777777775422 22 224557788888899999999999887642 1124457777776543221 111222
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 005966 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN 516 (667)
Q Consensus 438 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 516 (667)
+.+.+.. +.++.+|.++.++|.-+++.+.|++.|++....+| ...+|+.+..-+.....+|.|...|+..+.. .|.
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~r 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPR 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cch
Confidence 2333333 67899999999999999999999999999999877 5789999999999999999999999998764 333
Q ss_pred -HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005966 517 -EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLG 593 (667)
Q Consensus 517 -~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 593 (667)
...|..+.-.|.+.++++.|+-.|+++.+ -.|.+......++..+-+.|+.|+|+++++++ ...| |+.....-+.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 35677788889999999999999999987 44456777888889999999999999999998 4555 6666677777
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCCcc
Q 005966 594 ACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652 (667)
Q Consensus 594 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 652 (667)
.+...+++++|...++++.++-|++..++..++.+|.+.|+.+.|+..|--+.+...+.
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 88889999999999999999999999999999999999999999999999988876543
No 41
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.61 E-value=2.7e-09 Score=103.92 Aligned_cols=562 Identities=10% Similarity=0.095 Sum_probs=315.0
Q ss_pred hhhHhHHHHHHHHhCCCc-----hhhhh---hHhhhc---CChhhHHHhhcccC---CCCcchHHHHHHHHHhCCCchHH
Q 005966 29 IAGTKQLHAFIITSGPLF-----THLRS---SLVRAY---GHVSNVRILFDEMS---ERSSFLYNTVMKMYAQNGASHDS 94 (667)
Q Consensus 29 ~~~a~~~~~~~~~~~~~~-----~~~~~---~~~~~~---g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a 94 (667)
..+-..+|+++++.-|.+ .|+.. +.-..+ .-++.....|++.. .+=+..|-.-++.+.++|+...-
T Consensus 42 ~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~t 121 (835)
T KOG2047|consen 42 DKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRT 121 (835)
T ss_pred hHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHH
Confidence 345567888888888877 22211 111111 11122222333221 13446788888889999999999
Q ss_pred HHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCC
Q 005966 95 LKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE 174 (667)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 174 (667)
...|+..++.-.+.-....|...+......+-++-+..+|++-++.. +..-+-.|..++..+++++|-+.+..+..
T Consensus 122 R~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln 197 (835)
T KOG2047|consen 122 RRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLN 197 (835)
T ss_pred HHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcC
Confidence 99999888762233345678888888888888888999998887654 34466778888899999999888887744
Q ss_pred C----------ChhhHHHHHHHHHHcCChhHH---HHHHHHHHHCCCCCChH--HHHHHHHHcccCcchHHHHHHHHHHH
Q 005966 175 H----------SVVSWNTLISGYFKNAYAKEA---LVVFDWMLKSGVEPDCA--SVVSVLPACGYLKEIEMGRMIHELVA 239 (667)
Q Consensus 175 ~----------~~~~~~~li~~~~~~~~~~~A---~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~ 239 (667)
. +-..|+.+-+..+++-+.-.- -.+++.+.. .-||.. .|.++..-|.+.|+++.|..+++..+
T Consensus 198 ~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai 275 (835)
T KOG2047|consen 198 QDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAI 275 (835)
T ss_pred chhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3 233566666666555443322 233333332 345543 56777788888888888888888777
Q ss_pred hcCCCcchhHHHHHHHHHHhcCC----------------------HHHHHHHHhhcCCC---------------ChhHHH
Q 005966 240 GGRLGKNIAAWNALVDMYVKCGS----------------------VNEARLVFDRMSER---------------DVVTWT 282 (667)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~~g~----------------------~~~A~~~~~~~~~~---------------~~~~~~ 282 (667)
+.-. .+.-++.+-+.|+.-.. ++-.+.-|+.+... ++..|.
T Consensus 276 ~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~ 353 (835)
T KOG2047|consen 276 QTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWH 353 (835)
T ss_pred Hhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHH
Confidence 6432 23334444444443221 11122222222211 111111
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcC
Q 005966 283 SMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCN 362 (667)
Q Consensus 283 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 362 (667)
.-+. +..|+..+-...|.+..+. +.|... .-.-...|..+...|-..|
T Consensus 354 kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka-----------------------------~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 354 KRVK--LYEGNAAEQINTYTEAVKT-VDPKKA-----------------------------VGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred hhhh--hhcCChHHHHHHHHHHHHc-cCcccC-----------------------------CCChhhHHHHHHHHHHhcC
Confidence 1111 1123333333333333322 111100 0111235566677777777
Q ss_pred CHHHHHHHHhccCCCCccc-------HHHHHHHHHhCCChHHHHHHHHHHHHCCC-----------CC------CHHHHH
Q 005966 363 LVKLSFQVFARTSKKKTVP-------WNAILAGCVHNGLARKAVELFRQMLVEVV-----------EP------NDATLN 418 (667)
Q Consensus 363 ~~~~a~~~~~~~~~~~~~~-------~~~li~~~~~~~~~~~A~~~~~~m~~~g~-----------~p------~~~~~~ 418 (667)
+++.|+.+|++..+-+-.+ |......-.++.+++.|+++.++.....- ++ +...|.
T Consensus 402 ~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs 481 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWS 481 (835)
T ss_pred cHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHH
Confidence 7777777777766443333 44444444556667777776666542211 11 112333
Q ss_pred HHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--CCc-chHHHHHHHHHHc
Q 005966 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD--KDI-VVWSVIIAGYGMH 495 (667)
Q Consensus 419 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~-~~~~~l~~~~~~~ 495 (667)
..+..--..|-++....+++.+++..+ .++.+.-.....+....-++++.++|++-.... |++ ..|+..+.-+.+.
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 444444456778888888888887774 334444444455666777888999998877766 443 4677766665442
Q ss_pred ---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HhccCCHHHHHHHHHHhHHhcCCCCc--hhHHHHHHHHHhhcCC
Q 005966 496 ---GHGETAVSLFKEMVQSGVQPNEVTFTSALHA--CSHGGLLDEGLDLFNFMLENHQTCSR--ADHYTCIVDLLGRAGR 568 (667)
Q Consensus 496 ---~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 568 (667)
...+.|..+|++.++ |++|...-+..|+-+ =.+.|....|+.+++++.. ++++. ...|+..|.--...=-
T Consensus 561 ygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred hcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhC
Confidence 368889999999988 677765433333322 2345888888888888765 44333 3356555543222211
Q ss_pred hHHHHHHHHhC-CCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHhhccCCC--CCchHHHHHHHHhhcCC
Q 005966 569 LDEAYDLIRTM-PLKPTHAVWG---ALLGACVIHGNVELGEVAAKWLFELEPE--NPGNYVLLSKLYSAVRR 634 (667)
Q Consensus 569 ~~~A~~~~~~~-~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 634 (667)
...-.++|+++ ..-|+...-. .....-.+.|..+.|..++...-++-|. ++..|...-..=.+.|+
T Consensus 638 v~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 638 VPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred CcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 22223333333 2234433222 2222344567777777777766554432 44556666655666666
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=4.2e-10 Score=105.42 Aligned_cols=418 Identities=12% Similarity=0.101 Sum_probs=276.7
Q ss_pred hcCChhhHHHhhcccCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHH
Q 005966 56 AYGHVSNVRILFDEMSE---RSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIA 132 (667)
Q Consensus 56 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 132 (667)
.++++..|+.+|++... +++-.|---+..=.++.....|..++++.... .|--...|..-+..=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 34566778888888754 46678888889999999999999999999976 33223345555555567899999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhccc--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 005966 133 LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAM--WEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210 (667)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 210 (667)
+|++-.+- .|+...+++.|..=.+-..++.|..+++.. ..|++.+|---...=-++|+...|..+|+...+. ..
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hh
Confidence 99998765 799999999999999999999999999986 5689999988888888999999999999988763 22
Q ss_pred ChHH----HHHHHHHcccCcchHHHHHHHHHHHhcCCCc-chhHHHHHHHHHHhcCCHHHHHHHH--------hhcCCC-
Q 005966 211 DCAS----VVSVLPACGYLKEIEMGRMIHELVAGGRLGK-NIAAWNALVDMYVKCGSVNEARLVF--------DRMSER- 276 (667)
Q Consensus 211 ~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~--------~~~~~~- 276 (667)
|... |++....=.+...++.|.-++..++++-... ....|..+...=-+.|+.....+.. +.+...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 3333 3333333446678888999999888763221 1344555554444456554444332 222222
Q ss_pred --ChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChh--hHHHHHH-----Hh---hcccchHHHHHHHHHHHHhcC
Q 005966 277 --DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSL--TIGSLLS-----AC---SSLYYLKRGRSLHAWTIKQNL 344 (667)
Q Consensus 277 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--t~~~ll~-----~~---~~~~~~~~a~~~~~~~~~~~~ 344 (667)
|-.+|-..+..--..|+.+...++|++.... ++|-.. .+...|- +| ....+++...+++...++ -+
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lI 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LI 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hc
Confidence 3445555566556678888888888887754 444211 1111111 11 112233333333333333 11
Q ss_pred CCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005966 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424 (667)
Q Consensus 345 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 424 (667)
+....++.-+ |-.....-.++.+...|.+++-... |.-|...+|...|..-
T Consensus 397 PHkkFtFaKi---------------------------WlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelE 447 (677)
T KOG1915|consen 397 PHKKFTFAKI---------------------------WLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELE 447 (677)
T ss_pred CcccchHHHH---------------------------HHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHH
Confidence 2222222221 3333344455667777777776655 6677777777777777
Q ss_pred hCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---CCcchHHHHHHHHHHcCChHHH
Q 005966 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD---KDIVVWSVIIAGYGMHGHGETA 501 (667)
Q Consensus 425 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 501 (667)
.+.+.++.+..+++..++.+ |-+-.++......-...|+.+.|..+|.-..+.. .....|.+.|.--...|.++.|
T Consensus 448 lqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 448 LQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH
Confidence 77788888888888777766 4556667666777777788888888887766652 1234566666666777888888
Q ss_pred HHHHHHHHHc
Q 005966 502 VSLFKEMVQS 511 (667)
Q Consensus 502 ~~~~~~m~~~ 511 (667)
..+|+++++.
T Consensus 527 R~LYerlL~r 536 (677)
T KOG1915|consen 527 RALYERLLDR 536 (677)
T ss_pred HHHHHHHHHh
Confidence 8888888774
No 43
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.61 E-value=5.2e-12 Score=126.74 Aligned_cols=251 Identities=12% Similarity=0.006 Sum_probs=160.5
Q ss_pred HHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCC
Q 005966 97 MFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS 176 (667)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 176 (667)
++-.+... |+.|+..||..+|..||..|+.+.|- +|.-|.-...+.+...++.++......++.+.+. +|.
T Consensus 12 fla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 44455555 78888888888888888888887777 7777777777777778888887777777776664 667
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHH-HH-------HCCCCCChHHHHHHHHHcc--------------cCcchHHHHHH
Q 005966 177 VVSWNTLISGYFKNAYAKEALVVFDW-ML-------KSGVEPDCASVVSVLPACG--------------YLKEIEMGRMI 234 (667)
Q Consensus 177 ~~~~~~li~~~~~~~~~~~A~~~~~~-m~-------~~g~~p~~~~~~~ll~~~~--------------~~~~~~~a~~~ 234 (667)
..+|..|..+|.+.|+... ++..++ |. ..|+-.-..-|-..+++|. ..|-++.+.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887654 222222 21 1232222222222222221 12222222322
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHHh-cCCHHHHHHHHhhcCC-CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 005966 235 HELVAGGRLGKNIAAWNALVDMYVK-CGSVNEARLVFDRMSE-RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPN 312 (667)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 312 (667)
+..+-..... .+... +++-+.. ...+++-..+.....+ +++.+|.+++..-..+|+.+.|..++.+|.+.|++.+
T Consensus 162 l~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 162 LAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 2221111000 00011 1222221 2234444444444444 8889999999999999999999999999999999888
Q ss_pred hhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCC
Q 005966 313 SLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363 (667)
Q Consensus 313 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 363 (667)
..-|..++-+ .++...+..+...|...|+.|+..++...+-.+...|.
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888888766 77888888889999999999999988877766666554
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=1.3e-12 Score=130.25 Aligned_cols=277 Identities=12% Similarity=0.050 Sum_probs=206.9
Q ss_pred cCCHHHHHHHHhccCCCC--ccc-HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhCcCCHHHHHH
Q 005966 361 CNLVKLSFQVFARTSKKK--TVP-WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLN--SLLPAYAILADLQQAMN 435 (667)
Q Consensus 361 ~g~~~~a~~~~~~~~~~~--~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~ 435 (667)
.|+++.|++.+....+.. +.. |-.......+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 588888888877655432 222 333344457889999999999998763 55543332 33567788899999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-Ccc--------hHHHHHHHHHHcCChHHHHHHHH
Q 005966 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIV--------VWSVIIAGYGMHGHGETAVSLFK 506 (667)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~--------~~~~l~~~~~~~~~~~~a~~~~~ 506 (667)
.++.+.+.. +.++.....+...|.+.|++++|.+++..+.+..+ +.. +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998876 66778888899999999999999999988877652 111 33333444444555666667777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-C
Q 005966 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-T 584 (667)
Q Consensus 507 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 584 (667)
.+.+. .+.++.....+..++...|+.++|...+++..+ .+|+.... ++......++.+++++.+++. +..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 76543 245677888889999999999999999998877 23454322 333444669999999999887 4556 5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 585 HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 585 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
+..+..+...|.+.|++++|.+.|+++++..|+ ...+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 667888999999999999999999999999999 45567899999999999999999988654
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=7.5e-12 Score=119.71 Aligned_cols=480 Identities=10% Similarity=-0.031 Sum_probs=264.4
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcc--cCCCChhhHHHHHHHHHHcC
Q 005966 114 YPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDA--MWEHSVVSWNTLISGYFKNA 191 (667)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~~ 191 (667)
+..+.+-+..+.++.-|.-+-+++...+..| ...--+..++.-.|+++.|..+... +.+.|..+.......+.+..
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp--~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLTNDP--ADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhccCCh--HHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 4444444455566777777777666555344 3333466777777888888776654 45567888888888888888
Q ss_pred ChhHHHHHHHHHHH--CCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 005966 192 YAKEALVVFDWMLK--SGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269 (667)
Q Consensus 192 ~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 269 (667)
++++|+.++..-.. ..+.-+..+- .... +.+.+..... .......+-.-...|....+.++|...
T Consensus 97 ~~~~al~vl~~~~~~~~~f~yy~~~~---~~~l----~~n~~~~~~~------~~~essic~lRgk~y~al~n~~~ar~~ 163 (611)
T KOG1173|consen 97 EWDQALLVLGRGHVETNPFSYYEKDA---ANTL----ELNSAGEDLM------INLESSICYLRGKVYVALDNREEARDK 163 (611)
T ss_pred HHHHHHHHhcccchhhcchhhcchhh---hcee----ccCccccccc------ccchhceeeeeeehhhhhccHHHHHHH
Confidence 88888888773210 0011010000 0000 0000000000 000011111112234445566777777
Q ss_pred HhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhcC----CCCChhhHHHHHHHhh-cccchHHHHHHHHHHHHhcC
Q 005966 270 FDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEG----VRPNSLTIGSLLSACS-SLYYLKRGRSLHAWTIKQNL 344 (667)
Q Consensus 270 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~ 344 (667)
|.+....|+..|..+...-.. ..-.+.+.++.+.... .+.+......+..... +..+.+ ....-....-.+.
T Consensus 164 Y~~Al~~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~-~~~r~~~~sl~~l 240 (611)
T KOG1173|consen 164 YKEALLADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEE-SLTRNEDESLIGL 240 (611)
T ss_pred HHHHHhcchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccc-ccccCchhhhhhh
Confidence 766655555544443221110 0111111222221110 0111111111111100 000000 0000000000011
Q ss_pred CCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005966 345 ECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAY 424 (667)
Q Consensus 345 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 424 (667)
..+..+ ......-+...+++.+..++.+...+. .++....+..-|.++
T Consensus 241 ~~~~dl-------------------------------l~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l 288 (611)
T KOG1173|consen 241 AENLDL-------------------------------LAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACL 288 (611)
T ss_pred hhcHHH-------------------------------HHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHH
Confidence 122222 223334444556666666666665543 233333444444455
Q ss_pred hCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCC-cchHHHHHHHHHHcCChHHHHH
Q 005966 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHGHGETAVS 503 (667)
Q Consensus 425 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 503 (667)
...|+..+-..+-..+++.- |..+.+|-++.-.|...|+..+|.+.|.+....+|. ...|-.+...|.-.|..++|+.
T Consensus 289 ~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAma 367 (611)
T KOG1173|consen 289 YELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMA 367 (611)
T ss_pred HHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHH
Confidence 56666555555555555443 556677777777777778888888888877665443 4578888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCC---
Q 005966 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP--- 580 (667)
Q Consensus 504 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 580 (667)
.|...-+.- +-....+..+.--|.+.++.+.|.++|..+.. -.|.|+...+-++-..-..+.+.+|...|+...
T Consensus 368 aY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 368 AYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI 444 (611)
T ss_pred HHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence 887776631 11222233344457778888888888888876 444556666667666677788888888877651
Q ss_pred -----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 581 -----LKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 581 -----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
.++ -..+++.|+-+|++.+.+++|+..+++++.+.|.++.++..+|-+|...|+++.|++.|.+..-
T Consensus 445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 111 2345777888888888888888888888888888888888888888888888888888887554
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=1.3e-12 Score=131.06 Aligned_cols=287 Identities=10% Similarity=-0.020 Sum_probs=194.4
Q ss_pred HhcCCHHHHHHHHhccCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHH
Q 005966 359 AKCNLVKLSFQVFARTSKKKTVP---WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMN 435 (667)
Q Consensus 359 ~~~g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 435 (667)
...|+++.|.+.+.+..+..+.+ +-.......+.|+++.|.+.+.+..+....+....-......+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 34678888888777665433322 334456667778888888888887654322222233334667778888999998
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-CCcchHH----HHHHHHHHcCChHHHHHHHHHHHH
Q 005966 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD-KDIVVWS----VIIAGYGMHGHGETAVSLFKEMVQ 510 (667)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~----~l~~~~~~~~~~~~a~~~~~~m~~ 510 (667)
.++.+.+.. |.++.....+...+.+.|++++|.+++..+.+.+ ++...+. .........+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888888876 5566778888888999999998888888887654 2332221 111112233333334445555555
Q ss_pred cCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CH
Q 005966 511 SGV---QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-TH 585 (667)
Q Consensus 511 ~~~---~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 585 (667)
... +.+...+..+...+...|+.++|.+++++..+.....++..............++.+.+.+.+++. +..| |+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence 422 136677888888899999999999999999883322111110122222234457788888888776 4555 44
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHH--HhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 586 --AVWGALLGACVIHGNVELGEVAAK--WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 586 --~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
....++.+.|.+.|++++|.+.++ .+++..|++ ..+..++.++.+.|+.++|.+++++...
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567788999999999999999999 577788884 4466999999999999999999988543
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=8.6e-12 Score=116.27 Aligned_cols=194 Identities=12% Similarity=0.115 Sum_probs=111.8
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCC-cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005966 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527 (667)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 527 (667)
+.|..++.+-|.-.++.++|...|++..+.+|. ...|+.+..-|...++...|++-|++.++-. +-|...|-.|.++|
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 344555555566666666666666666555443 3455666666666666666666666666643 33555666666666
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 005966 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP--LKPTHAVWGALLGACVIHGNVELGE 605 (667)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~ 605 (667)
.-.+...=|+-+|+++.+ -.|-|...|.+|+++|.+.++.++|++.|++.- -..+...+..|+..+-+.++.++|.
T Consensus 409 eim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 666666666666666655 333455566666666666666666666666652 2223355666666666666666666
Q ss_pred HHHHHhhc-------cCCCCCchHHHHHHHHhhcCCchHHHHHHHHh
Q 005966 606 VAAKWLFE-------LEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645 (667)
Q Consensus 606 ~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 645 (667)
..+++-++ ..|.-..+...|+.-+.+.+++++|-.+..+.
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 66666554 22322334444555566666666665554443
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.56 E-value=2.4e-12 Score=128.39 Aligned_cols=252 Identities=12% Similarity=0.021 Sum_probs=196.2
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHH--HHHHHHHHhcCCHHHHH
Q 005966 392 NGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVS--TGLIDIYSKCGSLESAH 469 (667)
Q Consensus 392 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~ 469 (667)
.|++++|.+.+....+..-.| ...|.....+....|+++.|.+.+..+.+.. |+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 699999998888765542222 2334444455588999999999999997653 444332 24477899999999999
Q ss_pred HHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHH
Q 005966 470 KIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE-------VTFTSALHACSHGGLLDEGLDLFN 541 (667)
Q Consensus 470 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~ 541 (667)
..++++.+..| ++.....+...|.+.|++++|.+++.++.+.+..++. .+|..++.......+.+...++++
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999988876 4678888999999999999999999999997655332 133334444444556677777777
Q ss_pred HhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCc
Q 005966 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620 (667)
Q Consensus 542 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 620 (667)
..-+ ..+.++.....++..+...|+.++|.+.+++. +..||+... ++.+....++.+++....++.++..|+|+.
T Consensus 254 ~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~ 329 (398)
T PRK10747 254 NQSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPL 329 (398)
T ss_pred hCCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHH
Confidence 7755 33457778889999999999999999999887 555666433 334445669999999999999999999999
Q ss_pred hHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 621 NYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
.+..++.++.+.|+|++|.+.|+++.+..+
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999988754
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=4.8e-13 Score=130.55 Aligned_cols=246 Identities=17% Similarity=0.160 Sum_probs=196.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHhcCCHH-HHH
Q 005966 393 GLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF--LSVVEVSTGLIDIYSKCGSLE-SAH 469 (667)
Q Consensus 393 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~-~A~ 469 (667)
-+..+|+..|..... .+.-+......+..+|...+++++|.++|+.+.+... -.+..+|.+.+--+-+.=.+. -|.
T Consensus 333 y~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 356899999999544 3444557777889999999999999999999987541 224566666553332211111 122
Q ss_pred HHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 005966 470 KIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP-NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548 (667)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 548 (667)
++.+..+ ..+.+|-++..+|.-+++.+.|++.|++.++. .| ...+|..+..-+.....+|.|...|+.++.
T Consensus 412 ~Li~~~~---~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--- 483 (638)
T KOG1126|consen 412 DLIDTDP---NSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--- 483 (638)
T ss_pred HHHhhCC---CCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---
Confidence 3333322 35789999999999999999999999999985 55 567888888888889999999999999887
Q ss_pred CCCchhHHH---HHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHH
Q 005966 549 TCSRADHYT---CIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623 (667)
Q Consensus 549 ~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 623 (667)
.|...|+ .++-.|.++++++.|.-.|+++ .+.| +.+....++..+.+.|+.++|+++++++..++|.|+-.-+
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 4444455 5777899999999999999998 6777 5667778888899999999999999999999999999999
Q ss_pred HHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 624 LLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
..+.++...+++++|+..++++++.-
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhC
Confidence 99999999999999999999998753
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=2.9e-14 Score=135.93 Aligned_cols=228 Identities=18% Similarity=0.167 Sum_probs=105.7
Q ss_pred HHHHHHhCcCCHHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcC
Q 005966 419 SLLPAYAILADLQQAMNIHCYLIRYG-FLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHG 496 (667)
Q Consensus 419 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 496 (667)
.+...+.+.|++++|.+++....... .+.++..+..+.......++++.|.+.++++...++ ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 45677889999999999997655444 355667777788888889999999999999988764 35566677776 7999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHH
Q 005966 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576 (667)
Q Consensus 497 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 576 (667)
++++|.+++++..+. .+++..+..++..+...++++++..+++.+......+++...|..++..+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887765 356667788888899999999999999998875555678888999999999999999999999
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 577 RTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 577 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
++. ...| |......+++.+...|+.+++.++++...+..|+|+..+..++.+|...|+.++|+.++++..+..
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 998 5667 577889999999999999999999999999889999999999999999999999999999988754
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.51 E-value=2.1e-11 Score=122.42 Aligned_cols=289 Identities=11% Similarity=-0.029 Sum_probs=178.5
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCChhhH-HHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHH
Q 005966 289 ALNGDVRNALGLFQLMQFEGVRPNSLTI-GSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLS 367 (667)
Q Consensus 289 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 367 (667)
...|+++.|.+.+.+..+. .|+...+ .....+....|+.+.+...+....+....+...+...
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~-------------- 158 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIA-------------- 158 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHH--------------
Confidence 4578888888888776553 3443322 2223334444555555555555443321111112122
Q ss_pred HHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCC
Q 005966 368 FQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS 447 (667)
Q Consensus 368 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 447 (667)
....+...|++++|...++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.+..+
T Consensus 159 -----------------~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 159 -----------------RTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred -----------------HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 2444555666666666666666543 2233455566666666666666666666666665332
Q ss_pred CchHHHHHHHHH---Hh----cCCHHHHHHHHhhCCCCC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 005966 448 VVEVSTGLIDIY---SK----CGSLESAHKIFSEIPIKD-KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519 (667)
Q Consensus 448 ~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 519 (667)
+......-..++ .. ....+...+.++..+... .++..+..+...+...|+.++|.+++++..+.. ||...
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~ 298 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRA 298 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCccc
Confidence 222211111111 11 222334444444443321 267788888899999999999999999999863 44432
Q ss_pred --H-HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHh--C-CCCCCHHHHHHHHH
Q 005966 520 --F-TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT--M-PLKPTHAVWGALLG 593 (667)
Q Consensus 520 --~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~ 593 (667)
+ ..........++.+.+.+.++...+.....|+.....+++..+.+.|++++|.+.|++ . ...|+...+..+..
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ 378 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAAD 378 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHH
Confidence 1 1122223445788899999998887444444336677899999999999999999994 3 57899998889999
Q ss_pred HHHhcCCHHHHHHHHHHhhc
Q 005966 594 ACVIHGNVELGEVAAKWLFE 613 (667)
Q Consensus 594 ~~~~~g~~~~A~~~~~~~~~ 613 (667)
.+.+.|+.++|.+++++.+.
T Consensus 379 ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 379 AFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998765
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.1e-10 Score=109.69 Aligned_cols=406 Identities=14% Similarity=0.014 Sum_probs=211.0
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCC-cccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 005966 77 LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPD-NYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAM 155 (667)
Q Consensus 77 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 155 (667)
.+.....-|.++|.+++|++.|.+.++. .|| +.-|.....+|...|+++...+---..++.. +.-+-.+....++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHH
Confidence 4556677889999999999999999976 677 7778888899999999999999888888775 3335567777788
Q ss_pred HHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHH--------HHHHH-C--CCCCChHHHHHHHHHccc
Q 005966 156 YMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVF--------DWMLK-S--GVEPDCASVVSVLPACGY 224 (667)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~--------~~m~~-~--g~~p~~~~~~~ll~~~~~ 224 (667)
+-..|++++|+.- +|-.++..++....-..-+.+++ ++-.. + -+-|+.....+.+..+-.
T Consensus 193 ~E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 193 HEQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 8888999888632 12223333322222222222222 22211 1 234555544444444321
Q ss_pred CcchHHHHHHHHHHHhcCCCcchhHHHHHHHHH----Hh-cCCHHHHHHHHhhcCC-------C---C------hhHHHH
Q 005966 225 LKEIEMGRMIHELVAGGRLGKNIAAWNALVDMY----VK-CGSVNEARLVFDRMSE-------R---D------VVTWTS 283 (667)
Q Consensus 225 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~-~g~~~~A~~~~~~~~~-------~---~------~~~~~~ 283 (667)
.-. .....+.......+..++ .. ...+..|...+.+-.. . | ..+...
T Consensus 264 ~~~------------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 264 DPK------------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred ccc------------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 100 000000001111111111 10 0123333333322111 1 1 112222
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCC
Q 005966 284 MINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNL 363 (667)
Q Consensus 284 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 363 (667)
...-+.-.|+.-.|.+-|+..+.....++.. |..+-..|....+.++....|....+.+ +.++.+|-.-..++.-.++
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHH
Confidence 2223344677777777777777653333221 5555555666666666666665555544 3334444444444444444
Q ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Q 005966 364 VKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEP-NDATLNSLLPAYAILADLQQAMNIHCYLIR 442 (667)
Q Consensus 364 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 442 (667)
++.|..-| ++.+.. .| +...|..+.-+..+.+.+++++..|++..+
T Consensus 410 ~e~A~aDF-------------------------------~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk 456 (606)
T KOG0547|consen 410 YEEAIADF-------------------------------QKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK 456 (606)
T ss_pred HHHHHHHH-------------------------------HHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 444321 22 222333333333444455555555554443
Q ss_pred hCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCC---------cchHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 005966 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD---------IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513 (667)
Q Consensus 443 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 513 (667)
. +|..+..|+.....+...++++.|.+.|+......|. +.+-.+++..- -.+++..|.+++.+..+.+.
T Consensus 457 k-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dp 534 (606)
T KOG0547|consen 457 K-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDP 534 (606)
T ss_pred h-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCc
Confidence 2 3445555666666666666666666666554443322 11111222221 23677777777777776532
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005966 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545 (667)
Q Consensus 514 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 545 (667)
+ ....|.+|...-.+.|+.++|+++|++...
T Consensus 535 k-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 535 K-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred h-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 234677777777777777777777776654
No 53
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=1.3e-09 Score=98.31 Aligned_cols=150 Identities=12% Similarity=0.051 Sum_probs=91.0
Q ss_pred HHHHHHHHhhCCCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 005966 465 LESAHKIFSEIPIKD---KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541 (667)
Q Consensus 465 ~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 541 (667)
+.-|...|+-+-+.. ..+..-.++..++.-..++++.+.++..+..--.. |..-...+..+++..|.+.+|+++|-
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHh
Confidence 334555554443332 12233455666666666777777777777664322 33333346677777788888888877
Q ss_pred HhHHhcCCCCchhHHH-HHHHHHhhcCChHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 542 FMLENHQTCSRADHYT-CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG-ALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 542 ~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
.+.. ..+ .|..+|. .|..+|.+.+.++-|++++-++....+..++. .+.+-|.+.+.+=-|-+.|..+-.++|.
T Consensus 418 ~is~-~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 418 RISG-PEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhcC-hhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 7654 222 3333444 35677788888888888877775444444443 3344577778777777777777777766
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.49 E-value=4.4e-09 Score=102.52 Aligned_cols=518 Identities=11% Similarity=0.059 Sum_probs=319.0
Q ss_pred ccHHHHHHHhccccchHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHc
Q 005966 112 YTYPIVIKACTDLAWRKLGIALHGRVLITG-FDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKN 190 (667)
Q Consensus 112 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 190 (667)
..|..-+..+.+++++..-+..|+..+..- +.-...+|...+......|-++.+..++++..+-++..-+..|..+++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 457777777889999999999999887663 3344567888888888899999999999999888888888899999999
Q ss_pred CChhHHHHHHHHHHHC------CCCCChHHHHHHHHHcccCcchHHH---HHHHHHHHhcCCCcchhHHHHHHHHHHhcC
Q 005966 191 AYAKEALVVFDWMLKS------GVEPDCASVVSVLPACGYLKEIEMG---RMIHELVAGGRLGKNIAAWNALVDMYVKCG 261 (667)
Q Consensus 191 ~~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 261 (667)
+++++|.+.+...... ..+.+...|..+....++..+.-.. ..++..+...=.+.=...|++|.+-|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 9999999998877542 1234445566555555544443332 233333332211122457899999999999
Q ss_pred CHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChHHHHHHHHHHH--hcCCCCChhhHHHHHHHhhcccchHHHHHHHH
Q 005966 262 SVNEARLVFDRMSE--RDVVTWTSMINGYALNGDVRNALGLFQLMQ--FEGVRPNSLTIGSLLSACSSLYYLKRGRSLHA 337 (667)
Q Consensus 262 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 337 (667)
++++|..+|++... -.+.-|..+..+|+.-....-+..+ ++. +.+-.-+..... -...-++
T Consensus 263 ~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~m--e~a~~~~~n~ed~~dl~-------------~~~a~~e 327 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKM--ELADEESGNEEDDVDLE-------------LHMARFE 327 (835)
T ss_pred hhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHH--hhhhhcccChhhhhhHH-------------HHHHHHH
Confidence 99999999988654 2333344444444321111000000 000 001111111111 1111111
Q ss_pred HHHHhc-----------CCCCchHHhHHHHHHHhcCCHHHHHHHHhcc-------CCCCccc--HHHHHHHHHhCCChHH
Q 005966 338 WTIKQN-----------LECEVIVETALIDMYAKCNLVKLSFQVFART-------SKKKTVP--WNAILAGCVHNGLARK 397 (667)
Q Consensus 338 ~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~~~--~~~li~~~~~~~~~~~ 397 (667)
.+.... -+.++..|..-+..+ .|+..+-...+.+. ...+... |..+...|-..|+.+.
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 111110 022222222222222 34444444444332 2222222 9999999999999999
Q ss_pred HHHHHHHHHHCCCCCC---HHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC-----------CC------CCchHHHHHHH
Q 005966 398 AVELFRQMLVEVVEPN---DATLNSLLPAYAILADLQQAMNIHCYLIRYG-----------FL------SVVEVSTGLID 457 (667)
Q Consensus 398 A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~------~~~~~~~~l~~ 457 (667)
|..+|++......+-- ..+|......-.+..+++.|..+.+...... .+ .+..++...++
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 9999999876543322 2344444445556778888888877654211 11 13445666777
Q ss_pred HHHhcCCHHHHHHHHhhCCCCC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhc---cCC
Q 005966 458 IYSKCGSLESAHKIFSEIPIKD-KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV-TFTSALHACSH---GGL 532 (667)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~---~g~ 532 (667)
.....|-++....+|+++.+.. ..+...-.....+-.+.-++++.++|++-+..-..|+.. .|+..+.-+.+ .-.
T Consensus 486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~k 565 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTK 565 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCC
Confidence 7788899999999999988754 222222222233445666899999999887764456653 56666655443 247
Q ss_pred HHHHHHHHHHhHHhcCCCCchh--HHHHHHHHHhhcCChHHHHHHHHhCC--CCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 005966 533 LDEGLDLFNFMLENHQTCSRAD--HYTCIVDLLGRAGRLDEAYDLIRTMP--LKPTH--AVWGALLGACVIHGNVELGEV 606 (667)
Q Consensus 533 ~~~A~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~--~~~~~l~~~~~~~g~~~~A~~ 606 (667)
.+.|..+|+++++ +.+|... .|......-.+-|-...|+++++++. .++.. ..|+..+.-....=-...-..
T Consensus 566 lEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~ 643 (835)
T KOG2047|consen 566 LERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTRE 643 (835)
T ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHH
Confidence 8999999999998 7766532 33333344446789999999999984 33322 245555544333223445578
Q ss_pred HHHHhhccCCCCCch--HHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 607 AAKWLFELEPENPGN--YVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 607 ~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
+|+++++.-|++-.. ....+++=.+.|..+.|+.++....+-
T Consensus 644 iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 644 IYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 999999998885443 334577788899999999998876543
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.8e-10 Score=109.22 Aligned_cols=271 Identities=15% Similarity=0.087 Sum_probs=159.9
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHH
Q 005966 286 NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365 (667)
Q Consensus 286 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 365 (667)
.-+...+++.++.++.+...+. .++....+..-|.++...|+...-.-+-..+++.- +..+.+|-++.-.|...|+..
T Consensus 252 d~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcH
Confidence 3344445555555555555443 12333333333333333443333333322222221 334455566666666667777
Q ss_pred HHHHHHhccCCCCcc---cHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Q 005966 366 LSFQVFARTSKKKTV---PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR 442 (667)
Q Consensus 366 ~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 442 (667)
+|++.|.+...-|.. .|-.+..+|+-.|..++|+..|...-+.= +-.
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~----------------------------- 379 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGC----------------------------- 379 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCC-----------------------------
Confidence 777777665533332 27777777777777777777666544320 000
Q ss_pred hCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHc--CC---CC-
Q 005966 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQS--GV---QP- 515 (667)
Q Consensus 443 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~---~p- 515 (667)
..| ..| +.--|.+.++++-|.+.|.......| |+...+-+.......+.+.+|..+|+..+.. .+ .+
T Consensus 380 --hlP--~LY--lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~ 453 (611)
T KOG1173|consen 380 --HLP--SLY--LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIF 453 (611)
T ss_pred --cch--HHH--HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccc
Confidence 011 111 22235566677777777776666554 5566666666666677778888877776631 01 11
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 005966 516 NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHAVWGALLGA 594 (667)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 594 (667)
-..+++.|..+|.+.+++++|+..+++.+. ..+.+..++.+++-.|...|+++.|.+.|.+. .++|+..+...++..
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 234677788888888888888888888877 55567778888888888888888888888776 577777666666554
Q ss_pred HH
Q 005966 595 CV 596 (667)
Q Consensus 595 ~~ 596 (667)
+.
T Consensus 532 ai 533 (611)
T KOG1173|consen 532 AI 533 (611)
T ss_pred HH
Confidence 43
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=7.7e-12 Score=116.65 Aligned_cols=201 Identities=14% Similarity=0.106 Sum_probs=168.9
Q ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCC-cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005966 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525 (667)
Q Consensus 447 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 525 (667)
.....+..+...+...|++++|.+.+++.....|+ ...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34566777888999999999999999987765554 5677888889999999999999999998864 335567778888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 005966 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVEL 603 (667)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 603 (667)
.+...|++++|.+.++++.+....+.....+..+...+...|++++|...+++. ...| +...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999999873333334556777889999999999999999987 3444 56678888899999999999
Q ss_pred HHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 604 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
|...++++++..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999998888889999999999999999999998887654
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.47 E-value=4.8e-09 Score=104.66 Aligned_cols=411 Identities=17% Similarity=0.131 Sum_probs=268.5
Q ss_pred cCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHH
Q 005966 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE---RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIG 317 (667)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 317 (667)
..+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+...+...|.-..|..++++-....-.|+..+--
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34556788899999999999999999999999876 456678999999999999999999998876543335444433
Q ss_pred HHHHH-h-hcccchHHHHHHHHHHHHh--cC--CCCchHHhHHHHHHHhcC-----------CHHHHHHHHhccC---CC
Q 005966 318 SLLSA-C-SSLYYLKRGRSLHAWTIKQ--NL--ECEVIVETALIDMYAKCN-----------LVKLSFQVFARTS---KK 377 (667)
Q Consensus 318 ~ll~~-~-~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~---~~ 377 (667)
.+... | .+.+.++++..+-..++.. +. ...+..+..+.-+|...- ...++...+++.. ..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33332 3 3456777777666666552 21 122333444444443221 1345566666664 33
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hCCCCCchHHHHHH
Q 005966 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIR-YGFLSVVEVSTGLI 456 (667)
Q Consensus 378 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~ 456 (667)
|+.....+.--|+-.++.+.|++..++..+.+-.-+...|..+.-.+...+++..|+.+.+.... .|...... ..-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~--~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM--DGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc--hhhh
Confidence 44443444556777889999999999999887778888888888888999999999999887653 32211100 0011
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--------------------------CC--C-C-cchHHHHHHHHHHcCChHHHHHHHH
Q 005966 457 DIYSKCGSLESAHKIFSEIPI--------------------------KD--K-D-IVVWSVIIAGYGMHGHGETAVSLFK 506 (667)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~--------------------------~~--~-~-~~~~~~l~~~~~~~~~~~~a~~~~~ 506 (667)
..-..-++.+++......+.. .. | + +.++..+..-....+ ..+..-..
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~ 632 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK 632 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc
Confidence 111123344433332221110 00 0 1 112221111111100 00000000
Q ss_pred HHHHcCCC--CCH------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHh
Q 005966 507 EMVQSGVQ--PNE------VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578 (667)
Q Consensus 507 ~m~~~~~~--p~~------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 578 (667)
+...-.. |+. ..|......+.+.+..++|...+.++.+ ..+-....|...+..+...|.+++|.+.|..
T Consensus 633 -Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 633 -LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred -cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 1111122 221 2344556678888999999988888876 3445566788888889999999999999887
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCCccCC
Q 005966 579 M-PLKPT-HAVWGALLGACVIHGNVELGEV--AAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAP 654 (667)
Q Consensus 579 ~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 654 (667)
. ...|+ +....++...+.+.|+...|.. ++..+++.+|.++.+|+.||.++.+.|+.++|.+.|+...+.. ...|
T Consensus 710 Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe-~S~P 788 (799)
T KOG4162|consen 710 ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE-ESNP 788 (799)
T ss_pred HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc-cCCC
Confidence 6 57774 5588899999999999888888 9999999999999999999999999999999999999987765 3456
Q ss_pred CeeEE
Q 005966 655 AHSLI 659 (667)
Q Consensus 655 ~~~~~ 659 (667)
-.+|.
T Consensus 789 V~pFs 793 (799)
T KOG4162|consen 789 VLPFS 793 (799)
T ss_pred ccccc
Confidence 55554
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=1.3e-10 Score=106.86 Aligned_cols=278 Identities=13% Similarity=0.056 Sum_probs=211.8
Q ss_pred cCCHHHHHHHHhccCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHH
Q 005966 361 CNLVKLSFQVFARTSKKKTVP---WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIH 437 (667)
Q Consensus 361 ~g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 437 (667)
.|++.+|+++..+-.+....+ |-.-+.+-.+.|+.+.+-.++.+..+.--.++.....+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 578888888887765444333 44555666678899999999988887544555566667777788889999999988
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--CC-------cchHHHHHHHHHHcCChHHHHHHHHHH
Q 005966 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD--KD-------IVVWSVIIAGYGMHGHGETAVSLFKEM 508 (667)
Q Consensus 438 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m 508 (667)
..+.+.+ +..+.......++|.+.|++.....++..+.+.+ .+ ..+|+.++.-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8888877 5667788888999999999999999998888766 12 246777777766666666666677766
Q ss_pred HHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHH
Q 005966 509 VQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-P-LKPTHA 586 (667)
Q Consensus 509 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~ 586 (667)
... .+-++..-..++.-+.+.|+.++|.++.++..+ ....|.. ..+ -...+.++.+.-++..++. . .+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhH---HHH-HhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 554 455666777778888899999999999999888 4554552 222 2345677777766666665 2 233557
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 587 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
.+.+|+..|.+++.+.+|...++.+++..|+ ...+..++.++.+.|+.++|.+.+++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 8889999999999999999999999999998 7889999999999999999999988865
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.45 E-value=2.6e-08 Score=97.56 Aligned_cols=608 Identities=11% Similarity=0.028 Sum_probs=307.8
Q ss_pred CCCChhHHHHHHHHhhccCChhhHhHHHHHHHHhCCCc-hhhhh--hHhhhcCChhhHHHhhcccCCC---CcchHHHHH
Q 005966 9 LPKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-THLRS--SLVRAYGHVSNVRILFDEMSER---SSFLYNTVM 82 (667)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~--~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~ 82 (667)
+||-.-+++.-+.-|...+.+..+..+.+.+++-.|++ ..+.. -.+...|+-++|.......... +.+.|..+.
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~g 82 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLG 82 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHH
Confidence 45556666666666778888999999999999988877 33333 4455679999999888776543 567899888
Q ss_pred HHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCH
Q 005966 83 KMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEV 162 (667)
Q Consensus 83 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 162 (667)
-.+....++++|++.|...... -+.|...+.-+.-.=++.++++........+.+.. +.....|..+..++.-.|+.
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999976 34445555555444456677777777777776664 44455677777777777888
Q ss_pred HHHHHHhcccCC-----CChhhHHHH------HHHHHHcCChhHHHHHHHHHHHCCCCCChHHH-HHHHHHcccCcchHH
Q 005966 163 KAARKVFDAMWE-----HSVVSWNTL------ISGYFKNAYAKEALVVFDWMLKSGVEPDCASV-VSVLPACGYLKEIEM 230 (667)
Q Consensus 163 ~~A~~~~~~~~~-----~~~~~~~~l------i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~ 230 (667)
..|..++++..+ ++...|.-. .....+.|..+.|++.+..-... + -|...+ .+-...+.+.+++++
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHh
Confidence 888877766522 233333222 23445566667776666544321 1 111111 222223445566666
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHH-HHHhhcCC--CCh-hHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005966 231 GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEAR-LVFDRMSE--RDV-VTWTSMINGYALNGDVRNALGLFQLMQF 306 (667)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~ 306 (667)
|..++..++..+ +.+...|..+..++.+-.+.-++. .+|....+ |.. ..-..=+.......-.+..-.++..+.+
T Consensus 238 A~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 238 AVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 666666665553 112333333333333222222222 44443332 000 0000000111111112223334444455
Q ss_pred cCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhc--cCCCCcccH--
Q 005966 307 EGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFAR--TSKKKTVPW-- 382 (667)
Q Consensus 307 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~-- 382 (667)
.|+++-...+.++-. .....+ +.+.+ +..|...-.-.......+. ...|....|
T Consensus 317 Kg~p~vf~dl~SLyk---~p~k~~----~le~L---------------vt~y~~~L~~~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 317 KGVPSVFKDLRSLYK---DPEKVA----FLEKL---------------VTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred cCCCchhhhhHHHHh---chhHhH----HHHHH---------------HHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence 555432222222111 111000 11111 1111000000000000000 001111112
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 005966 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDA-TLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461 (667)
Q Consensus 383 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (667)
..++..+-+.|+++.|...++.... -.|+.+ -|..-.+.+...|+++.|..++++..+.. .+|..+-.--+.-..+
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 2344555566666666666666553 244433 23333455666666666666666665554 3444444445555566
Q ss_pred cCCHHHHHHHHhhCCCCCCCcc--------hHHHH--HHHHHHcCChHHHHHHHHHHHHc-----CCCCCHHHH------
Q 005966 462 CGSLESAHKIFSEIPIKDKDIV--------VWSVI--IAGYGMHGHGETAVSLFKEMVQS-----GVQPNEVTF------ 520 (667)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~~~~~--------~~~~l--~~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~~~------ 520 (667)
+++.++|.++.......+-+.. .|-.+ ..+|.+.|++..|++-|..+.+. .-+-|-.||
T Consensus 452 An~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~t 531 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGT 531 (700)
T ss_pred ccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCc
Confidence 6666666666665555432111 22222 34566677776666555444331 012233333
Q ss_pred ----HHHHHHHhcc---CC----HHHHHHHHHHhHHhc-CCCCchhHHHHHH----HHHhhc-CChHHHHHHHHhC----
Q 005966 521 ----TSALHACSHG---GL----LDEGLDLFNFMLENH-QTCSRADHYTCIV----DLLGRA-GRLDEAYDLIRTM---- 579 (667)
Q Consensus 521 ----~~ll~~~~~~---g~----~~~A~~~~~~~~~~~-~~~~~~~~~~~l~----~~~~~~-g~~~~A~~~~~~~---- 579 (667)
.-|+...-.. -. ...|++++-.|.+.. ...+.......+. ....++ .+-.+|...-+.+
T Consensus 532 lrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~ 611 (700)
T KOG1156|consen 532 LRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKK 611 (700)
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233222111 11 123455555554421 0001111111111 111111 1111121111111
Q ss_pred ----------CCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 580 ----------PLKPTHAVWGALLGACVIHG-NVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 580 ----------~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
+..||.. -+.....+.. -.++|..++.......++++..|..-..+|.+.|++.-|.+.+++....
T Consensus 612 ~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~ 688 (700)
T KOG1156|consen 612 KKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACLNNAEGI 688 (700)
T ss_pred HhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 1234444 2333344443 4788999999999999999999999999999999999999999887665
Q ss_pred CC
Q 005966 649 GL 650 (667)
Q Consensus 649 ~~ 650 (667)
..
T Consensus 689 ~~ 690 (700)
T KOG1156|consen 689 HG 690 (700)
T ss_pred cC
Confidence 43
No 60
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=6.3e-09 Score=100.62 Aligned_cols=446 Identities=11% Similarity=0.061 Sum_probs=247.5
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHH
Q 005966 187 YFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEA 266 (667)
Q Consensus 187 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 266 (667)
+...|++++|.....++...+ +-|...+..-+-++.+.+.++.|..+.+.-... ..+..-+---+-+..+.++.|+|
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHH
Confidence 344555555555555555432 222333444444455555555555333221100 00011111112344567888888
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhh-HHHHHHHhhcccchHHHHHHHHHHHHhcCC
Q 005966 267 RLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLT-IGSLLSACSSLYYLKRGRSLHAWTIKQNLE 345 (667)
Q Consensus 267 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 345 (667)
+..++...+.+..+...-...+.+.|++++|+.+|+.+.+++..--..- -..++.+-.. ... ..+......
T Consensus 99 lk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~~~q~v~~v 170 (652)
T KOG2376|consen 99 LKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-QLLQSVPEV 170 (652)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-HHHHhccCC
Confidence 8888865555555666667778888888888888888876654221111 1111111110 000 012222222
Q ss_pred CCchHHhHH---HHHHHhcCCHHHHHHHHhcc--------CCCCcc-----c-----HHHHHHHHHhCCChHHHHHHHHH
Q 005966 346 CEVIVETAL---IDMYAKCNLVKLSFQVFART--------SKKKTV-----P-----WNAILAGCVHNGLARKAVELFRQ 404 (667)
Q Consensus 346 ~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~--------~~~~~~-----~-----~~~li~~~~~~~~~~~A~~~~~~ 404 (667)
| ..+|..+ .-.+...|++.+|+++++.. ...|.- . -..+.-.+...|+..+|..+|..
T Consensus 171 ~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 171 P-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 2 2233332 33456778899988888766 222111 1 23455667788999999999999
Q ss_pred HHHCCCCCCHHH----HHHHHHHHhCcCCHHH--HHHHHHHH-----------HHhCCCCCchHHHHHHHHHHhcCCHHH
Q 005966 405 MLVEVVEPNDAT----LNSLLPAYAILADLQQ--AMNIHCYL-----------IRYGFLSVVEVSTGLIDIYSKCGSLES 467 (667)
Q Consensus 405 m~~~g~~p~~~~----~~~ll~~~~~~~~~~~--a~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (667)
..... .+|... .|.++. ...-.++.. +...++.. ......-....-+.++.+| .+..+.
T Consensus 250 ~i~~~-~~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q 325 (652)
T KOG2376|consen 250 IIKRN-PADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQ 325 (652)
T ss_pred HHHhc-CCCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHH
Confidence 98764 344422 222222 222111111 11111111 1110001111112233333 466777
Q ss_pred HHHHHhhCCCCCCCcchHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH-----
Q 005966 468 AHKIFSEIPIKDKDIVVWSVIIAGYGM-HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN----- 541 (667)
Q Consensus 468 A~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~----- 541 (667)
+.++........|....=..+..+... ...+..+.+++...-+....-.......++......|+++.|.+++.
T Consensus 326 ~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 326 VRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred HHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 888887777765554444444444332 33577888888887775322223445556666788999999999999
Q ss_pred ---HhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-----CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHH
Q 005966 542 ---FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-----PLKPTHA----VWGALLGACVIHGNVELGEVAAK 609 (667)
Q Consensus 542 ---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~ 609 (667)
.+.+ .+..|- +...++..+.+.++.+.|..++.+. ...+... ++..++..-.+.|+.++|...++
T Consensus 406 ~~ss~~~-~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 406 WKSSILE-AKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred hhhhhhh-hccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 4444 343344 4566778888888877777776655 1222222 33444444557799999999999
Q ss_pred HhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCCccCCCee
Q 005966 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHS 657 (667)
Q Consensus 610 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 657 (667)
++++.+|.|..+...++.+|... +.+.|..+=.. +.+.+++.
T Consensus 483 el~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~-----L~p~~~l~ 524 (652)
T KOG2376|consen 483 ELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK-----LPPLKGLK 524 (652)
T ss_pred HHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc-----CCCcccch
Confidence 99999999999999999999875 46777766443 44444444
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=3.5e-10 Score=104.18 Aligned_cols=287 Identities=12% Similarity=0.019 Sum_probs=177.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHH
Q 005966 190 NAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLV 269 (667)
Q Consensus 190 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 269 (667)
.|+|.+|.+...+-.+.+-.| ...|.....+.-..|+.+.+..++..+.+.--.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577777777777766554443 2345555566667777777777777777664456677777778888888888888887
Q ss_pred HhhcCC---CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCC
Q 005966 270 FDRMSE---RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLEC 346 (667)
Q Consensus 270 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 346 (667)
++++.+ .+.........+|.+.|++.....++..|.+.|+--|+..- .+
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH-----------
Confidence 777654 56777888888999999999999999999888765443321 00
Q ss_pred CchHHhHHHHHHHhcCCHHHHHHHHhccC---CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005966 347 EVIVETALIDMYAKCNLVKLSFQVFARTS---KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPA 423 (667)
Q Consensus 347 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 423 (667)
...++..+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++-.+.+..|+.. .+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHh
Confidence 01122333333333333333333444443 3334445556666667777777777777777666655522 2223
Q ss_pred HhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHH
Q 005966 424 YAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVS 503 (667)
Q Consensus 424 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 503 (667)
+.+.++...-.+..+...+.. +.++..+..|...|.+.+.+.+|.+.|+...+..|+..+|+.+..++.+.|+..+|.+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 455566665555555544433 3344566666666666666666666666655555666666666666666666666666
Q ss_pred HHHHHHH
Q 005966 504 LFKEMVQ 510 (667)
Q Consensus 504 ~~~~m~~ 510 (667)
.+++...
T Consensus 383 ~r~e~L~ 389 (400)
T COG3071 383 VRREALL 389 (400)
T ss_pred HHHHHHH
Confidence 6665543
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=9.9e-12 Score=110.48 Aligned_cols=230 Identities=13% Similarity=0.016 Sum_probs=183.0
Q ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchH-HHHHHHHH
Q 005966 415 ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVW-SVIIAGYG 493 (667)
Q Consensus 415 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~l~~~~~ 493 (667)
..-..+..+|.+.|.+.+|...++.-.+. .|-+.+|..|...|.+..++..|..+|.+..+..|..++| ..+...+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence 33445667777777777777777766554 3556677778888888888888888888888777755554 44666777
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHH
Q 005966 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573 (667)
Q Consensus 494 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 573 (667)
..++.++|.++|+...+.. ..+......+...|.-.++.+-|+.++++++. .|. .+.+.|+.+.-+|.-.+++|-++
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhH
Confidence 7888899999999888864 33555666677778888899999999999888 555 56677888888888899999988
Q ss_pred HHHHhCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 574 DLIRTMP---LKP--THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 574 ~~~~~~~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
..|++.. ..| -..+|..+.......||+..|.+.|+-++..+|++..+++.|+.+-.+.|++++|..++....+.
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 8888762 223 34579999888899999999999999999999999999999999999999999999999988765
Q ss_pred C
Q 005966 649 G 649 (667)
Q Consensus 649 ~ 649 (667)
.
T Consensus 459 ~ 459 (478)
T KOG1129|consen 459 M 459 (478)
T ss_pred C
Confidence 4
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=1.4e-10 Score=103.30 Aligned_cols=292 Identities=13% Similarity=0.106 Sum_probs=140.8
Q ss_pred CCHHHHHHHHhccCCCCcccH---HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhCcCCHHHHHH
Q 005966 362 NLVKLSFQVFARTSKKKTVPW---NAILAGCVHNGLARKAVELFRQMLVEVVEPND---ATLNSLLPAYAILADLQQAMN 435 (667)
Q Consensus 362 g~~~~a~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~ 435 (667)
.+.++|.++|-+|.+.++.++ -+|.+.|.+.|..+.|+.+-..+.++.--+.. ...-.|..-|...|-++.|..
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 344555555555544444442 23444455555555555555544432111111 122233344445555555555
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCc------chHHHHHHHHHHcCChHHHHHHHHHHH
Q 005966 436 IHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI------VVWSVIIAGYGMHGHGETAVSLFKEMV 509 (667)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~ 509 (667)
+|..+.+.+ ..-......|+..|....+|++|+++-.++.+.++.. ..|--+...+....+.+.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 555554433 2223344445555555555555555555444433211 122333344444556666666666666
Q ss_pred HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHH
Q 005966 510 QSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHAVW 588 (667)
Q Consensus 510 ~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 588 (667)
+.+.+ ....-..+.+.....|+++.|.+.++.+.+ ....--..+...|..+|...|+.++....+.++ ...+.....
T Consensus 208 qa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 208 QADKK-CVRASIILGRVELAKGDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred hhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 54311 222233344455566666666666666655 222122334555566666666666666666554 334444444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHh--hcCCchHHHHHHHHhhhCCCccCCCe
Q 005966 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS--AVRRWKDAENVRDVMDEKGLRKAPAH 656 (667)
Q Consensus 589 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~ 656 (667)
..+...-....-.+.|...+.+-+...|+--..+..+.--.. ..|.+.+....++.|....++..|.+
T Consensus 286 l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~Y 355 (389)
T COG2956 286 LMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRY 355 (389)
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCc
Confidence 444444444444555555555666666663222222222222 23456666677777776666655544
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=4.7e-09 Score=96.82 Aligned_cols=375 Identities=10% Similarity=-0.000 Sum_probs=243.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHhCC-C-hHHH-------------HHHHHHHHh---
Q 005966 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSER-DVVTWTSMINGYALNG-D-VRNA-------------LGLFQLMQF--- 306 (667)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~-~-~~~a-------------~~~~~~m~~--- 306 (667)
+.......+.+|-..++-+.|..++.+.+.. ....-|.|+.-+.+.| + .+.+ +..+.-..+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 3444455666777777778888777777652 2222333333332222 1 1111 111111111
Q ss_pred ------------cCCCCChhhHHHHHHHhhc--ccchHHHHHHHHHHH-HhcCCCCchHHhHHHHHHHhcCCHHHHHHHH
Q 005966 307 ------------EGVRPNSLTIGSLLSACSS--LYYLKRGRSLHAWTI-KQNLECEVIVETALIDMYAKCNLVKLSFQVF 371 (667)
Q Consensus 307 ------------~~~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 371 (667)
..+.|...+....+.+++. .++-..+.+.+-.+. ..-++.|......+...+...|+.++|...|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 1233444444444554333 333333333333333 3456778888899999999999999999999
Q ss_pred hccCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCC
Q 005966 372 ARTSKKKTVP---WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV 448 (667)
Q Consensus 372 ~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 448 (667)
++....|+.+ .......+.+.|+.++...+...+.... .-....|..-........+++.|..+-++.++.+ +.+
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~ 333 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRN 333 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-ccc
Confidence 9887665555 2333445567888888888777776432 1122222222333445678888888888777655 445
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HH
Q 005966 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSAL-HA 526 (667)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~ 526 (667)
...+-.-..++...|+.++|.-.|+......| +..+|..|+.+|...|++.+|.-+-....+. +..+..++..+. ..
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V 412 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLV 412 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhccee
Confidence 55666666788888999999999988776654 6789999999999999999988877776554 233445555442 33
Q ss_pred Hh-ccCCHHHHHHHHHHhHHhcCCCCc-hhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHH
Q 005966 527 CS-HGGLLDEGLDLFNFMLENHQTCSR-ADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHAVWGALLGACVIHGNVEL 603 (667)
Q Consensus 527 ~~-~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~ 603 (667)
|. ....-++|.+++++.++ ..|+ ....+.+...+...|..++++.++++. ...||....+.|...+...+.+.+
T Consensus 413 ~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~ 489 (564)
T KOG1174|consen 413 LFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQK 489 (564)
T ss_pred eccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHH
Confidence 33 23345678888888766 3344 445667778888999999999999886 677888888999999999999999
Q ss_pred HHHHHHHhhccCCCCCchHHHHH
Q 005966 604 GEVAAKWLFELEPENPGNYVLLS 626 (667)
Q Consensus 604 A~~~~~~~~~~~p~~~~~~~~l~ 626 (667)
|...|..+++++|.+......|-
T Consensus 490 am~~y~~ALr~dP~~~~sl~Gl~ 512 (564)
T KOG1174|consen 490 AMEYYYKALRQDPKSKRTLRGLR 512 (564)
T ss_pred HHHHHHHHHhcCccchHHHHHHH
Confidence 99999999999998755555443
No 65
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2.1e-07 Score=95.59 Aligned_cols=530 Identities=13% Similarity=0.121 Sum_probs=306.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhC----------------
Q 005966 78 YNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITG---------------- 141 (667)
Q Consensus 78 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------- 141 (667)
|-.+++...+ -+++++.++...+.+. .|...-++.+...+...+..+.+..++-.+++..
T Consensus 513 ymflLq~l~r-~sPD~~~qFa~~l~Q~---~~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL 588 (1666)
T KOG0985|consen 513 YMFLLQQLKR-SSPDQALQFAMMLVQD---EEPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNL 588 (1666)
T ss_pred HHHHHHHHHc-cChhHHHHHHHHhhcc---CCCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHh
Confidence 5567777766 5788888888888764 2334445555555555444444444443333321
Q ss_pred ---C----------CCchHHHHHHHHHHHhcCCHHHHHHHhcccCC--CChhhHHH----HHHHHHHcCChhHHHHHHHH
Q 005966 142 ---F----------DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE--HSVVSWNT----LISGYFKNAYAKEALVVFDW 202 (667)
Q Consensus 142 ---~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~----li~~~~~~~~~~~A~~~~~~ 202 (667)
+ ..+..-+..+...|.+.|-...|++.+..+.. +.++.-+. -+-.|.-.-.++.++++++.
T Consensus 589 ~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclka 668 (1666)
T KOG0985|consen 589 VHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKA 668 (1666)
T ss_pred ccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHH
Confidence 0 01112244556677788888888877776632 11111111 12234445567888889999
Q ss_pred HHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhc-----------CCCcchhHHHHHHHHHHhcCCHHHHHHHHh
Q 005966 203 MLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG-----------RLGKNIAAWNALVDMYVKCGSVNEARLVFD 271 (667)
Q Consensus 203 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (667)
|...++.-+..+...+..-|...=..+.-.++|+..+.. ++..|+.+.-..|.+.++.|++.+..++.+
T Consensus 669 ml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicr 748 (1666)
T KOG0985|consen 669 MLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICR 748 (1666)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHh
Confidence 988888877776666665555544445555666655432 344566677788899999999999888776
Q ss_pred hcCC-------------------------------CChhHH--H----HHHHHHH-------------------------
Q 005966 272 RMSE-------------------------------RDVVTW--T----SMINGYA------------------------- 289 (667)
Q Consensus 272 ~~~~-------------------------------~~~~~~--~----~li~~~~------------------------- 289 (667)
+-.- +|.+.| . ..|..|.
T Consensus 749 esn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~i 828 (1666)
T KOG0985|consen 749 ESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFI 828 (1666)
T ss_pred ccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHH
Confidence 4320 111111 0 1122222
Q ss_pred ---------------------hCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccch-HHHH---------HHHHH
Q 005966 290 ---------------------LNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYL-KRGR---------SLHAW 338 (667)
Q Consensus 290 ---------------------~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~-~~a~---------~~~~~ 338 (667)
+.++..--+..++...+.|. -|..|++++...|..+++- +... .+=+.
T Consensus 829 k~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkY 907 (1666)
T KOG0985|consen 829 KNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKY 907 (1666)
T ss_pred HHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhh
Confidence 22222233333444444454 4566666666555443321 1110 00000
Q ss_pred HHHh-----------c--------CCCCchHHhHHHHHHHhcCCH---HH--------HHHHHhccC------CCCcccH
Q 005966 339 TIKQ-----------N--------LECEVIVETALIDMYAKCNLV---KL--------SFQVFARTS------KKKTVPW 382 (667)
Q Consensus 339 ~~~~-----------~--------~~~~~~~~~~l~~~~~~~g~~---~~--------a~~~~~~~~------~~~~~~~ 382 (667)
..+. | +......|....+.+.+..+. .+ -+.++++.. ..|+...
T Consensus 908 CEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~v 987 (1666)
T KOG0985|consen 908 CEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEV 987 (1666)
T ss_pred hcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHH
Confidence 0000 0 001112222222222222221 11 112333221 3455557
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH---------------------------hCcCCHHHH
Q 005966 383 NAILAGCVHNGLARKAVELFRQMLVEVVEP--NDATLNSLLPAY---------------------------AILADLQQA 433 (667)
Q Consensus 383 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~---------------------------~~~~~~~~a 433 (667)
+..+.++...+-+.+-+++++++.-.+-.- +...-+.++-.. ...+-+++|
T Consensus 988 S~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEA 1067 (1666)
T KOG0985|consen 988 SVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEA 1067 (1666)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHH
Confidence 777888888888888888888876432111 111111222111 122223444
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 005966 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513 (667)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 513 (667)
..+|+.. ..+......|+ -..+.+++|.+.-++.. .+..|+.+..+-.+.|...+|++-|-+.
T Consensus 1068 F~ifkkf-----~~n~~A~~VLi---e~i~~ldRA~efAe~~n----~p~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1068 FAIFKKF-----DMNVSAIQVLI---ENIGSLDRAYEFAERCN----EPAVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred HHHHHHh-----cccHHHHHHHH---HHhhhHHHHHHHHHhhC----ChHHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 4444332 11122222222 12345555555555543 4568999999999999999998776542
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 005966 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593 (667)
Q Consensus 514 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 593 (667)
-|+..|.-+++.+.+.|.|++-.+++..+.+ ....|.++ ..|+-+|++.+++.+-.+++. -|+..-...++.
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGD 1202 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhH
Confidence 3677899999999999999999999998877 45557664 568899999999888777654 478888889999
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHh
Q 005966 594 ACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645 (667)
Q Consensus 594 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 645 (667)
-|...|.++.|.-+|.. .+-|..|+..+...|+++.|...-++.
T Consensus 1203 rcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999887764 456777888888888888887765543
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.2e-09 Score=97.55 Aligned_cols=288 Identities=17% Similarity=0.182 Sum_probs=174.1
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcC-CCC--chHHhHHHHHHHhcCCHH
Q 005966 289 ALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNL-ECE--VIVETALIDMYAKCNLVK 365 (667)
Q Consensus 289 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~ 365 (667)
.-+++.++|.++|-+|.+.. +.+..+-.++-+.|.+.|..+.|.+++..+.++.- +.+ ...
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lA--------------- 109 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLA--------------- 109 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHH---------------
Confidence 34678899999999997731 11222223444455566666666666655554321 111 111
Q ss_pred HHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Q 005966 366 LSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGF 445 (667)
Q Consensus 366 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 445 (667)
...|..-|...|-+|.|.++|..+.+.| .--......|+..|-...+|++|+++-+++.+.+-
T Consensus 110 ----------------l~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~ 172 (389)
T COG2956 110 ----------------LQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG 172 (389)
T ss_pred ----------------HHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC
Confidence 2233444555555666666666555432 12223445555566666666666666665555443
Q ss_pred CCC----chHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCC-cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 005966 446 LSV----VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF 520 (667)
Q Consensus 446 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 520 (667)
.+. ...|.-|...+....+.+.|..++.+..+..|. +..--.+.......|+++.|.+.++...+.+..--+.+.
T Consensus 173 q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 173 QTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred ccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 222 123445566666677788888888877776554 344445566778889999999999998887644445677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhc-
Q 005966 521 TSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI-RTMPLKPTHAVWGALLGACVIH- 598 (667)
Q Consensus 521 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~- 598 (667)
..|..+|...|+.++....+..+.+ .. +....-..+.+.-....-.+.|...+ +.+..+|+...+..++......
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~-~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAME-TN--TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADA 329 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH-cc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccc
Confidence 8888889999999999988888877 22 33333444555545555556666554 4557889988888888875543
Q ss_pred --CCHHHHHHHHHHhh
Q 005966 599 --GNVELGEVAAKWLF 612 (667)
Q Consensus 599 --g~~~~A~~~~~~~~ 612 (667)
|...+....++.++
T Consensus 330 eeg~~k~sL~~lr~mv 345 (389)
T COG2956 330 EEGRAKESLDLLRDMV 345 (389)
T ss_pred cccchhhhHHHHHHHH
Confidence 33444444555544
No 67
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.36 E-value=5.7e-08 Score=95.24 Aligned_cols=451 Identities=14% Similarity=0.097 Sum_probs=239.3
Q ss_pred cccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCC---ChhhHHHHHHHHHHcCChhHHHHH
Q 005966 123 DLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEH---SVVSWNTLISGYFKNAYAKEALVV 199 (667)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~ 199 (667)
..+++.......+.+++ +.+....+.....-.+...|+.++|......-... +.++|+.+.-.+....++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 45667777777777766 33444455554444566678888888777765443 567899888888888999999999
Q ss_pred HHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC---C
Q 005966 200 FDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE---R 276 (667)
Q Consensus 200 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~ 276 (667)
|..... +.|| |...+..+.-.-++.|+++.....-....+ .
T Consensus 98 y~nAl~--~~~d----------------------------------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 98 YRNALK--IEKD----------------------------------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred HHHHHh--cCCC----------------------------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 998877 4555 333333333333344444444444443333 3
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHHHHHhcC-CCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHH
Q 005966 277 DVVTWTSMINGYALNGDVRNALGLFQLMQFEG-VRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALI 355 (667)
Q Consensus 277 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 355 (667)
....|..+..++.-.|++..|..++++..+.. -.|+...|......+-+ .
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~-----------------------------n 192 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ-----------------------------N 192 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-----------------------------H
Confidence 44567778888888899999999998887654 34666665443322111 1
Q ss_pred HHHHhcCCHHHHHHHHhccCCC--Cccc-HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-CcCCHH
Q 005966 356 DMYAKCNLVKLSFQVFARTSKK--KTVP-WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYA-ILADLQ 431 (667)
Q Consensus 356 ~~~~~~g~~~~a~~~~~~~~~~--~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~ 431 (667)
....+.|.++.|.+.+....+. |-.. -......+.+.++.++|..++..+... .||..-|...+..+. +-.+..
T Consensus 193 ~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~ 270 (700)
T KOG1156|consen 193 QILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDML 270 (700)
T ss_pred HHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhH
Confidence 1122333344444433332211 0000 122234445556666666666666543 455554444333332 222222
Q ss_pred HHH-HHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHH----HHHHHH
Q 005966 432 QAM-NIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET----AVSLFK 506 (667)
Q Consensus 432 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~ 506 (667)
++. .+|....+.- +.....-..=+....-..-.+..-.++....+.| -+.++..+...|-.-...+- +..+..
T Consensus 271 ~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg-~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~ 348 (700)
T KOG1156|consen 271 EALKALYAILSEKY-PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG-VPSVFKDLRSLYKDPEKVAFLEKLVTSYQH 348 (700)
T ss_pred HHHHHHHHHHhhcC-cccccchhccHHHhCcchhHHHHHHHHHHHhhcC-CCchhhhhHHHHhchhHhHHHHHHHHHHHh
Confidence 222 3333332211 0000000000000111111122222333333322 01112222222211111110 111111
Q ss_pred HHHHcC----------CCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHH
Q 005966 507 EMVQSG----------VQPNEV--TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYD 574 (667)
Q Consensus 507 ~m~~~~----------~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 574 (667)
.+...| -+|... ++..++..+-+.|+++.|..+++.++. ..|.-++.|..=..++...|.+++|..
T Consensus 349 ~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~ 426 (700)
T KOG1156|consen 349 SLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAA 426 (700)
T ss_pred hcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHH
Confidence 111111 134443 455567778888999999999998876 333335566666788889999999999
Q ss_pred HHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC-------CchHHHH--HHHHhhcCCchHHHHHHH
Q 005966 575 LIRTMP--LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN-------PGNYVLL--SKLYSAVRRWKDAENVRD 643 (667)
Q Consensus 575 ~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l--~~~~~~~g~~~~A~~~~~ 643 (667)
.+++.. ..||..+-..-+....+.++.++|.++..+.-+.+.+- .-.|+.+ |.+|.++|++.+|++-|.
T Consensus 427 ~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 427 WLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 998884 34455444466666778888999988888766544321 1123333 667888888888887665
Q ss_pred Hh
Q 005966 644 VM 645 (667)
Q Consensus 644 ~~ 645 (667)
.+
T Consensus 507 ~i 508 (700)
T KOG1156|consen 507 EI 508 (700)
T ss_pred hH
Confidence 54
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.35 E-value=9.6e-11 Score=99.60 Aligned_cols=164 Identities=16% Similarity=0.146 Sum_probs=139.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHH
Q 005966 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563 (667)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (667)
+...|.-+|.+.|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+-|+++.+ ..+.+..+.|..+..+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHH
Confidence 45567778899999999999999999874 22456888888889999999999999999987 4455677899999999
Q ss_pred hhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHH
Q 005966 564 GRAGRLDEAYDLIRTMPLKPT----HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAE 639 (667)
Q Consensus 564 ~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 639 (667)
|..|++++|...|++.-..|+ ..+|..++.+..+.|+.+.|+..++++++.+|+.+.....++....+.|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999998843433 4578888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCC
Q 005966 640 NVRDVMDEKGL 650 (667)
Q Consensus 640 ~~~~~~~~~~~ 650 (667)
.++++....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99998877664
No 69
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=4.2e-07 Score=93.41 Aligned_cols=233 Identities=12% Similarity=0.070 Sum_probs=168.8
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 005966 380 VPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIY 459 (667)
Q Consensus 380 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (667)
..|..+..+-.+.|...+|++-|-+. -|...|..++..+.+.|.+++-...+....+..-+|.+. +.|+-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 34888888888888888888877442 356778888888888999988888888777766555543 5678888
Q ss_pred HhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 005966 460 SKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDL 539 (667)
Q Consensus 460 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 539 (667)
++.+++.+.++++.. |+......+..-|...|.++.|.-+|... .-|..|...+...|.++.|...
T Consensus 1177 Akt~rl~elE~fi~g-----pN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAG-----PNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHhchHHHHHHHhcC-----CCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777643 77777788888888888888877666543 3466677777778888887766
Q ss_pred HHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC
Q 005966 540 FNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENP 619 (667)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 619 (667)
-+++ .+..+|..+-.+|...+.+.-|.-. -+.+--...-+..++..|...|-+++-+.+++..+.+...+.
T Consensus 1243 aRKA-------ns~ktWK~VcfaCvd~~EFrlAQiC--GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985|consen 1243 ARKA-------NSTKTWKEVCFACVDKEEFRLAQIC--GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred hhhc-------cchhHHHHHHHHHhchhhhhHHHhc--CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH
Confidence 5544 3456787777777776665443211 111222344567788889999999999999999999988888
Q ss_pred chHHHHHHHHhhcCCchHHHHHHHH
Q 005966 620 GNYVLLSKLYSAVRRWKDAENVRDV 644 (667)
Q Consensus 620 ~~~~~l~~~~~~~g~~~~A~~~~~~ 644 (667)
+.+-.|+-+|.+- +.++-.+.++-
T Consensus 1314 gmfTELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1314 GMFTELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 8888888777764 45555555554
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=1.3e-10 Score=103.56 Aligned_cols=238 Identities=16% Similarity=0.116 Sum_probs=196.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc
Q 005966 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462 (667)
Q Consensus 383 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (667)
+.+..+|.+.|-+.+|.+.|+.-.+. .|-..||..|-..|.+..+...|..++..-.+.- +-++....-..+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56778888888888888888877764 5566678888888888888999988888776543 55566666678888889
Q ss_pred CCHHHHHHHHhhCCCCC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 005966 463 GSLESAHKIFSEIPIKD-KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541 (667)
Q Consensus 463 g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 541 (667)
++.++|.++|+...+.. .++....++...|.-.++++-|+.+|+++++.|+. ++..|+.+.-+|...+++|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 99999999999988776 46777788888999999999999999999999965 88899999999999999999999999
Q ss_pred HhHHhcCCCCc--hhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 542 FMLENHQTCSR--ADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 542 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
++... -..|+ .++|-.+.......|++.-|.+.|+-. ...| ....++.|.-.-.+.|+.++|...++.+....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 98873 33243 467888999999999999999999987 3444 5568999988899999999999999999999998
Q ss_pred CCchHHHH
Q 005966 618 NPGNYVLL 625 (667)
Q Consensus 618 ~~~~~~~l 625 (667)
-......+
T Consensus 462 m~E~~~Nl 469 (478)
T KOG1129|consen 462 MAEVTTNL 469 (478)
T ss_pred ccccccce
Confidence 54444433
No 71
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.29 E-value=5.9e-08 Score=96.09 Aligned_cols=129 Identities=18% Similarity=0.070 Sum_probs=62.2
Q ss_pred cCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCh-HHHHHHHHHcccCcchHHHHHHHHH
Q 005966 159 FGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDC-ASVVSVLPACGYLKEIEMGRMIHEL 237 (667)
Q Consensus 159 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~ 237 (667)
..++.+|+.+|-+-. .-...|..|....+|++|+.+-+. .| .|.. ..-.+.++++...|.-+.|-++-+
T Consensus 544 ~kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~---~~-~p~~eklk~sy~q~l~dt~qd~ka~elk~- 613 (1636)
T KOG3616|consen 544 EKKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEA---KG-HPALEKLKRSYLQALMDTGQDEKAAELKE- 613 (1636)
T ss_pred HhhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHh---cC-ChHHHHHHHHHHHHHHhcCchhhhhhhcc-
Confidence 345677776664321 112334455555666666665432 12 2221 122333444444444443332211
Q ss_pred HHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 005966 238 VAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS--ERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305 (667)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 305 (667)
+..--.+-|..|.+.|.+..|.+....-. ..|......+..++.+..-+++|-.+|+++.
T Consensus 614 --------sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~ 675 (1636)
T KOG3616|consen 614 --------SDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIH 675 (1636)
T ss_pred --------ccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhh
Confidence 11111234566777777766665442211 1455555555566666666666666666654
No 72
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.29 E-value=2e-07 Score=92.43 Aligned_cols=262 Identities=15% Similarity=0.154 Sum_probs=168.0
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCccc--HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHH
Q 005966 355 IDMYAKCNLVKLSFQVFARTSKKKTVP--WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQ 432 (667)
Q Consensus 355 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 432 (667)
+.+-.....+.+|+.+++.+..++..+ |..+...|+..|+++.|.++|.+.- .++-.|..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 344455677788888888777766666 7777778888888888888876532 24456677888888888
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 005966 433 AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512 (667)
Q Consensus 433 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 512 (667)
|.++-.+. .|.......|-.-..-+-+.|++.+|+++|-.+.. |+ ..|..|-+.|..+..+++.++-.-.
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~--p~-----~aiqmydk~~~~ddmirlv~k~h~d- 879 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE--PD-----KAIQMYDKHGLDDDMIRLVEKHHGD- 879 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC--ch-----HHHHHHHhhCcchHHHHHHHHhChh-
Confidence 87765543 23344566666666777788888888888877766 65 3567788888888888777664221
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCC--CH--HHH
Q 005966 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKP--TH--AVW 588 (667)
Q Consensus 513 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~--~~~ 588 (667)
.-..|...+..-+...|+...|..-|-+..+ |.+-+++|-..+.|++|.++-+.-+-.. .. ..|
T Consensus 880 --~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 880 --HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred --hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 1123556666777788888888887766644 6667777888888888877766542110 00 011
Q ss_pred H------HHHHHHHhcCCHHHH-------------HHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 589 G------ALLGACVIHGNVELG-------------EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 589 ~------~l~~~~~~~g~~~~A-------------~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
. ..+..+-+.|-.+.| ..+.+-+. ...-+.++..++-.+...|++++|-+.+-+..+.+
T Consensus 948 aksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~--k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 948 AKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAA--KDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhh--hccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 1 111112233333333 33322222 22235577788888888899999877766655443
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.2e-07 Score=92.08 Aligned_cols=211 Identities=13% Similarity=0.132 Sum_probs=128.4
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHH--HHHHHH-
Q 005966 81 VMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNC--LIAMYM- 157 (667)
Q Consensus 81 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~- 157 (667)
=++-+...|++++|+....+++.. .+.+...+..-+-++.+.+.+++|..+.+. .+. ..+++. +=.+||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHH
Confidence 355677788999999999999976 466677788888888899999999855432 221 111222 234454
Q ss_pred -hcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-hHHHHHHHHHcccCcchHHHHHHH
Q 005966 158 -NFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD-CASVVSVLPACGYLKEIEMGRMIH 235 (667)
Q Consensus 158 -~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 235 (667)
+.+..++|+..++...+.+..+...-...+.+.|++++|+++|+.+.+++..-- ...-..++.+... ...
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~- 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV- 161 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-
Confidence 678999999999966665666777777888899999999999999987654321 1111112211110 000
Q ss_pred HHHHhcCCCcchhHHHH---HHHHHHhcCCHHHHHHHHhhcC--------CCCh----------hHHHHHHHHHHhCCCh
Q 005966 236 ELVAGGRLGKNIAAWNA---LVDMYVKCGSVNEARLVFDRMS--------ERDV----------VTWTSMINGYALNGDV 294 (667)
Q Consensus 236 ~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~--------~~~~----------~~~~~li~~~~~~~~~ 294 (667)
..+......| ..+|.. ..-.+...|++.+|+++++... +.|. ..---+.-++...|+.
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 0111111122 223333 2334556788888888877661 1111 0112234455667777
Q ss_pred HHHHHHHHHHHhcC
Q 005966 295 RNALGLFQLMQFEG 308 (667)
Q Consensus 295 ~~a~~~~~~m~~~~ 308 (667)
++|..++...++.+
T Consensus 241 ~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhc
Confidence 77777777776654
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=1.1e-09 Score=114.38 Aligned_cols=246 Identities=14% Similarity=0.040 Sum_probs=179.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh---------CcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcC
Q 005966 394 LARKAVELFRQMLVEVVEPNDA-TLNSLLPAYA---------ILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG 463 (667)
Q Consensus 394 ~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (667)
..++|..+|++..+. .|+.. .+..+..++. ..+++++|...+++..+.. +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 457888888887754 45443 3433333322 3355889999999888876 556778888888999999
Q ss_pred CHHHHHHHHhhCCCCCCC-cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHH
Q 005966 464 SLESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE-VTFTSALHACSHGGLLDEGLDLFN 541 (667)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~ 541 (667)
++++|...|++.....|+ ...+..+...+...|++++|+..+++..+.. |+. ..+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999998887775 5678888899999999999999999999864 443 233344445667899999999999
Q ss_pred HhHHhcCCCC-chhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 005966 542 FMLENHQTCS-RADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHA-VWGALLGACVIHGNVELGEVAAKWLFELEPEN 618 (667)
Q Consensus 542 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 618 (667)
++.+. .+| +...+..+..++...|++++|...++++ ...|+.. .++.+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 98762 234 3445777888999999999999999987 4555544 4455555667777 47778777776644333
Q ss_pred CchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 619 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
+.....+..+|.-.|+.+.+... +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 33333477778888888877776 8877664
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=4e-08 Score=88.99 Aligned_cols=211 Identities=13% Similarity=0.092 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcC-------ChHHHH
Q 005966 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHG-------HGETAV 502 (667)
Q Consensus 430 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~ 502 (667)
-+.|.+++--+.+. .| ..--.|+-.|.+.+++.+|..+.+++....|-......+. +...| ...-|.
T Consensus 270 gEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv--~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 270 GEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVV--FAALGQETGSREHLKIAQ 343 (557)
T ss_pred CccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHH--HHHhhhhcCcHHHHHHHH
Confidence 34555555444332 12 2233466678899999999999998765433322222222 22333 344455
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCC-
Q 005966 503 SLFKEMVQSGVQPNEV-TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP- 580 (667)
Q Consensus 503 ~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 580 (667)
+.|+-.-+.+..-|.. --.++.+++.-..++++.+.+++.+.. .-...|...+ .+..+++..|.+.+|.++|-...
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~ 421 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISG 421 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcC
Confidence 5555554454444432 244555666666789999999998887 4444455444 47899999999999999998873
Q ss_pred --CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhccCCCC-CchHHHHHHHHhhcCCchHHHHHHHHhhhCCCc
Q 005966 581 --LKPTHAVW-GALLGACVIHGNVELGEVAAKWLFELEPEN-PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651 (667)
Q Consensus 581 --~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 651 (667)
++ |..+| ..|.++|.+.+..+.|..++-+. ..|.+ -..+...++.|++.+++=-|.+.|+.+....+.
T Consensus 422 ~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 422 PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 33 44455 55666788999999998876543 22332 234556788899999988888888887766543
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=6e-10 Score=116.41 Aligned_cols=215 Identities=16% Similarity=0.029 Sum_probs=167.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH---------hcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCC
Q 005966 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYS---------KCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGH 497 (667)
Q Consensus 428 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 497 (667)
++.++|...+++..+.. +.+...+..+..++. ..+++++|...+++..+..| +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678999999888765 334555666665544 23458999999999988776 46778888888999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHH
Q 005966 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIR 577 (667)
Q Consensus 498 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 577 (667)
+++|...|++..+.+ +.+...+..+..++...|++++|...++++.+.... +...+..++..+...|++++|+..++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~--~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT--RAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999999974 224567888888999999999999999999883322 22233344555667899999999998
Q ss_pred hCC--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 578 TMP--LKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 578 ~~~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
+.. ..| ++..+..+..++...|+.++|...++++....|++......++..|...| ++|...++.+.+.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 872 345 44456777788889999999999999999999998888889999999888 4888888887653
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=1.7e-09 Score=100.75 Aligned_cols=195 Identities=16% Similarity=0.108 Sum_probs=113.2
Q ss_pred HHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCC
Q 005966 419 SLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGH 497 (667)
Q Consensus 419 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 497 (667)
.+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++.....| +...+..+...+...|+
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 114 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK 114 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 33344444444444444444443332 22334445555556666666666666655554433 33455556666666777
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHH
Q 005966 498 GETAVSLFKEMVQSGVQP-NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI 576 (667)
Q Consensus 498 ~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 576 (667)
+++|.+.+++..+....| ....+..+..++...|++++|...+.+..+. .+.+...+..+...+...|++++|.+.+
T Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 192 (234)
T TIGR02521 115 YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYL 192 (234)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777766532222 2334555666677777777777777777662 2234455666777777777777777777
Q ss_pred HhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 005966 577 RTM-PL-KPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616 (667)
Q Consensus 577 ~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 616 (667)
++. .. +++...+..+...+...|+.+.|....+.+.+..|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 193 ERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 765 22 23445555666667777777777777776655443
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.27 E-value=4.9e-08 Score=100.11 Aligned_cols=568 Identities=11% Similarity=-0.009 Sum_probs=272.4
Q ss_pred ChhhHHHhhcccCCCCc---chHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHH
Q 005966 59 HVSNVRILFDEMSERSS---FLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHG 135 (667)
Q Consensus 59 ~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 135 (667)
+...|...|-+....|+ ..|..|...|...-+..+|...|++..+. ...+..........++...+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 35555555555443332 35777777777666777777777777765 34455666667777777777777776632
Q ss_pred HHHHhCC-CCchHHHHHHHHHHHhcCCHHHHHHHhcccCC---CChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005966 136 RVLITGF-DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE---HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211 (667)
Q Consensus 136 ~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 211 (667)
..-+... ..-...|..+.-.|.+.++...|..-|+...+ .|...|..+..+|.+.|++..|+++|++... +.|+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH
Confidence 2221110 01112222344456666777777777766533 2555667777777777777777777777655 4454
Q ss_pred hHHHHHHHHH--cccCcchHHHHHHHHHHHhcC------CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--------
Q 005966 212 CASVVSVLPA--CGYLKEIEMGRMIHELVAGGR------LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-------- 275 (667)
Q Consensus 212 ~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------- 275 (667)
. +|.....+ -+..|.+.++...++.+...- ...-..++-.+...+.-.|-..+|..+|+.-.+
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 2 23222222 334566666666665554321 001122222222222233333333333333211
Q ss_pred ---CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHH----HHHHHHHHhcCCCCc
Q 005966 276 ---RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGR----SLHAWTIKQNLECEV 348 (667)
Q Consensus 276 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~----~~~~~~~~~~~~~~~ 348 (667)
.+...|-.+ ..|..+|.... .+ .|+......+..-.-..+....-. ..-.......+..+.
T Consensus 708 ~~~~~~~~Wi~a----------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~ 775 (1238)
T KOG1127|consen 708 SLQSDRLQWIVA----------SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHM 775 (1238)
T ss_pred hhhhhHHHHHHH----------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhcc
Confidence 111111111 12222333322 11 222222222222111111110000 000000001111122
Q ss_pred hHHhHHHHHHHh----cC----CHHHHHHHHhccC---CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 005966 349 IVETALIDMYAK----CN----LVKLSFQVFARTS---KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL 417 (667)
Q Consensus 349 ~~~~~l~~~~~~----~g----~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 417 (667)
..|..++..|.+ ++ +...|...+.... ..+...||.|.-. ...|++.-|...|-+-... .+-...+|
T Consensus 776 ~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W 853 (1238)
T KOG1127|consen 776 YPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQW 853 (1238)
T ss_pred chHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhhe
Confidence 333333332222 11 1223444444332 3444446665544 4445555555555443332 12334455
Q ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhh-----CCCCC-CCcchHHHHHHH
Q 005966 418 NSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSE-----IPIKD-KDIVVWSVIIAG 491 (667)
Q Consensus 418 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~~-~~~~~~~~l~~~ 491 (667)
..+--.+....+++.|...|...+... |.+...+-.........|+.-++..+|.. +.+.+ ++..-|-+...-
T Consensus 854 ~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~ 932 (1238)
T KOG1127|consen 854 LNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEI 932 (1238)
T ss_pred eccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHH
Confidence 555556667777777777777665543 23333333333344455666666666654 11111 444444444444
Q ss_pred HHHcCChHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHH----H
Q 005966 492 YGMHGHGETAVSLFKEMVQS---------GVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT----C 558 (667)
Q Consensus 492 ~~~~~~~~~a~~~~~~m~~~---------~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~ 558 (667)
....|+.++-+...+++... +.+-+...|........+.+.+..|..+..+...-....-+...|+ .
T Consensus 933 h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~ 1012 (1238)
T KOG1127|consen 933 HLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPD 1012 (1238)
T ss_pred HHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 55556555544333332211 2233445677666667777777777776666543222223344444 2
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCch---HHHHHHHHhhcCCc
Q 005966 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGN---YVLLSKLYSAVRRW 635 (667)
Q Consensus 559 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~ 635 (667)
....++..|.++.|...+......-|..+...-+.. .-.|+++++.+.|++++.+..++... ...++......+..
T Consensus 1013 ~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k 1091 (1238)
T KOG1127|consen 1013 AGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQK 1091 (1238)
T ss_pred hhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccc
Confidence 445566777787777666655433343333322222 44578888888888888766554442 22344445556667
Q ss_pred hHHHHHHHHhhh
Q 005966 636 KDAENVRDVMDE 647 (667)
Q Consensus 636 ~~A~~~~~~~~~ 647 (667)
+.|...+-+...
T Consensus 1092 ~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1092 NDAQFLLFEVKS 1103 (1238)
T ss_pred hHHHHHHHHHHH
Confidence 777766555443
No 79
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.5e-11 Score=81.33 Aligned_cols=50 Identities=38% Similarity=0.512 Sum_probs=46.4
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHccc
Q 005966 175 HSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGY 224 (667)
Q Consensus 175 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 224 (667)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999998874
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.26 E-value=8.4e-10 Score=105.32 Aligned_cols=214 Identities=13% Similarity=0.085 Sum_probs=120.7
Q ss_pred CCHHHHHHHHHHHHHhC-CCC--CchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCC-cchHHHHHHHHHHcCChHHHHH
Q 005966 428 ADLQQAMNIHCYLIRYG-FLS--VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHGHGETAVS 503 (667)
Q Consensus 428 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 503 (667)
+..+.++.-+..++... ..| ....+..+...|.+.|+.++|...|++..+..|+ ...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555555555322 122 1344666666777777777777777776665543 5667777777777777777777
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-C-
Q 005966 504 LFKEMVQSGVQPN-EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-P- 580 (667)
Q Consensus 504 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~- 580 (667)
.|++..+. .|+ ..++..+..++...|++++|.+.++...+.. |+..........+...+++++|.+.+++. .
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 77777764 343 3456666666777777777777777776622 22211122222334556677777777553 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHH--HHHHHHh----hccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 581 LKPTHAVWGALLGACVIHGNVELG--EVAAKWL----FELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 581 ~~p~~~~~~~l~~~~~~~g~~~~A--~~~~~~~----~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
..|+. |. ........|+...+ ...+.+. .++.|..+.+|..+|.+|.+.|++++|+..|++..+.+
T Consensus 195 ~~~~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 22222 21 11222223433222 2222221 23444555677777777777777777777777776654
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.25 E-value=3e-07 Score=92.20 Aligned_cols=134 Identities=19% Similarity=0.217 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHH
Q 005966 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL 563 (667)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (667)
.|......+.+.++.++|...+.+..... .-....|......+...|.+++|.+.|..... -.|.++....++..++
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHH
Confidence 46667778889999999998888887752 33455677777788899999999999999876 3334466788899999
Q ss_pred hhcCChHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCc
Q 005966 564 GRAGRLDEAYD--LIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620 (667)
Q Consensus 564 ~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 620 (667)
.+.|+..-|.. ++..+ +..| ++..|..++..+.+.|+.+.|-+.|.-+.++.+.+|.
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 99998777776 77776 6666 7889999999999999999999999999999988775
No 82
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2.2e-11 Score=80.53 Aligned_cols=50 Identities=36% Similarity=0.650 Sum_probs=47.9
Q ss_pred CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhc
Q 005966 276 RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325 (667)
Q Consensus 276 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 325 (667)
||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=9.3e-10 Score=109.14 Aligned_cols=231 Identities=19% Similarity=0.201 Sum_probs=154.1
Q ss_pred HHHHHHHHHhCcCCHHHHHHHHHHHHHh-----C-CCCCc-hHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--------C
Q 005966 416 TLNSLLPAYAILADLQQAMNIHCYLIRY-----G-FLSVV-EVSTGLIDIYSKCGSLESAHKIFSEIPIKD--------K 480 (667)
Q Consensus 416 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~ 480 (667)
++..+...|...|+++.|...++...+. | ..|.. .+.+.+...|...+++++|..+|+++.... |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555555555555555555544432 1 01222 222235666777777777777777654431 2
Q ss_pred C-cchHHHHHHHHHHcCChHHHHHHHHHHHH-----cCC-CCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcC--CC
Q 005966 481 D-IVVWSVIIAGYGMHGHGETAVSLFKEMVQ-----SGV-QPNEV-TFTSALHACSHGGLLDEGLDLFNFMLENHQ--TC 550 (667)
Q Consensus 481 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~-~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~ 550 (667)
. ..+++.|...|.+.|++++|...+++..+ .|. .|... .++.+...|...+++++|..++....+... ..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1 24566677777888887777776666543 122 22332 356677778889999999999887766432 22
Q ss_pred Cc----hhHHHHHHHHHhhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhc---
Q 005966 551 SR----ADHYTCIVDLLGRAGRLDEAYDLIRTMP---------LKPT-HAVWGALLGACVIHGNVELGEVAAKWLFE--- 613 (667)
Q Consensus 551 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 613 (667)
++ ..+++.|...|...|++++|.++++++- ..+. ...++.+...|.+.+++++|.+.|..+..
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 3578889999999999999999998871 2232 34678888889889999989988887654
Q ss_pred -cCCCCCc---hHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 614 -LEPENPG---NYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 614 -~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
.+|++|+ .|..|+.+|.+.|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4566554 57789999999999999999988876
No 84
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.23 E-value=3.9e-07 Score=93.75 Aligned_cols=545 Identities=12% Similarity=-0.035 Sum_probs=273.1
Q ss_pred CChhhHhHHHHHHHHhCCCc--hhhhh-hHhhhcCChhhHHHhhcccCC---CCcchHHHHHHHHHhCCCchHHHHHHHH
Q 005966 27 KSIAGTKQLHAFIITSGPLF--THLRS-SLVRAYGHVSNVRILFDEMSE---RSSFLYNTVMKMYAQNGASHDSLKMFLG 100 (667)
Q Consensus 27 ~~~~~a~~~~~~~~~~~~~~--~~~~~-~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 100 (667)
++...+...+=+.++.++.. .+... ..|...-+.-.|.+.|+..-+ .+..++......|++..+++.|..+.-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 34556666666666666665 33333 666655566777777776533 2556777777788888888887777433
Q ss_pred hHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCChhhH
Q 005966 101 MLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSW 180 (667)
Q Consensus 101 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 180 (667)
.-+......-...|..+.-.+...++...+..-|+...+.. |.|...|..+..+|.++|++..|.++|.....-++.++
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 33321111112233444455567777777777777777766 55777777888888888888888888866644333222
Q ss_pred HH---HHHHHHHcCChhHHHHHHHHHHHC------CCCCChHHHHHHHHHcccCcchHHHH-------HHHHHHHhcCCC
Q 005966 181 NT---LISGYFKNAYAKEALVVFDWMLKS------GVEPDCASVVSVLPACGYLKEIEMGR-------MIHELVAGGRLG 244 (667)
Q Consensus 181 ~~---li~~~~~~~~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~~~~a~-------~~~~~~~~~~~~ 244 (667)
-. ....-+..|.+.+|+..+...... +..--..++..+...+...|-...+. +.|--...+...
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~ 710 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQ 710 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 11 122335567777777776665431 11112223333333333233222222 222222222211
Q ss_pred cchhHHHHHHHHH-----------------------HhcCCH---H---HHHHHHhhcCC--CChhHHHHHHHHHHh---
Q 005966 245 KNIAAWNALVDMY-----------------------VKCGSV---N---EARLVFDRMSE--RDVVTWTSMINGYAL--- 290 (667)
Q Consensus 245 ~~~~~~~~l~~~~-----------------------~~~g~~---~---~A~~~~~~~~~--~~~~~~~~li~~~~~--- 290 (667)
.+...|-.+-++| -+.+.. | -+.+.+-.-.+ .+..+|..++..|.+
T Consensus 711 ~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~ 790 (1238)
T KOG1127|consen 711 SDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFL 790 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHH
Confidence 1222222221111 111111 1 00000000000 123444444444333
Q ss_pred -C----CChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHH
Q 005966 291 -N----GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVK 365 (667)
Q Consensus 291 -~----~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 365 (667)
. .+...|+..+.+..+. ..+...+-..+...+..|++.-+..-+-...... +.+..+|..+.-.+.+..+++
T Consensus 791 ~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E 867 (1238)
T KOG1127|consen 791 LLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFE 867 (1238)
T ss_pred HcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHH
Confidence 1 1233566666666542 3444444455555555555555444433322222 445667777777788888999
Q ss_pred HHHHHHhccC---CCCcccHHHHHHHHHhCCChHHHHHHHHHHH--H--CCCCCCHHHHHHHHHHHhCcCCHHHHHHHHH
Q 005966 366 LSFQVFARTS---KKKTVPWNAILAGCVHNGLARKAVELFRQML--V--EVVEPNDATLNSLLPAYAILADLQQAMNIHC 438 (667)
Q Consensus 366 ~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~--~--~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 438 (667)
.|...|.+.. +.+...|-.........|+.-+++.+|..-- . .|--|+..-+..........|+.+.-+...+
T Consensus 868 ~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ 947 (1238)
T KOG1127|consen 868 HAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTAR 947 (1238)
T ss_pred HhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhh
Confidence 9999988776 4455557666666667788888888887621 1 2333443333333333444555444333322
Q ss_pred HHHH---------hCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CCCcchHHHH----HHHHHHcCChHHHH
Q 005966 439 YLIR---------YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK---DKDIVVWSVI----IAGYGMHGHGETAV 502 (667)
Q Consensus 439 ~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l----~~~~~~~~~~~~a~ 502 (667)
.+-. .+.+.+...|.+.....-+.+.++.|.++..+.... .-+...|+.+ .+.++..|.++.|.
T Consensus 948 ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~ 1027 (1238)
T KOG1127|consen 948 KISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAK 1027 (1238)
T ss_pred hhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHh
Confidence 2211 244566777887777777777777777766653221 1244444432 22334445555444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCch-hHHHHHHHHHhhcCChHHHHHHHHhC
Q 005966 503 SLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA-DHYTCIVDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 503 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (667)
.-+..... ..+...-.+-+.. .-.++++++.+.|+++..-.....+. .....+.......+.-+.|...+-+.
T Consensus 1028 ~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~ 1101 (1238)
T KOG1127|consen 1028 KASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEV 1101 (1238)
T ss_pred hhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHH
Confidence 33222111 0111111111111 23466677777777666533333332 22333334444555556665554443
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.20 E-value=1.3e-07 Score=95.51 Aligned_cols=46 Identities=22% Similarity=0.153 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHH
Q 005966 599 GNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644 (667)
Q Consensus 599 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 644 (667)
.-.++|.++++.+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 471 dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 471 DPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred cHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 3479999999999999999999999999999999999999988764
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.17 E-value=3.1e-08 Score=98.54 Aligned_cols=203 Identities=16% Similarity=0.155 Sum_probs=132.8
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHH
Q 005966 383 NAILAGCVHNGLARKAVELFRQMLVE---VVEPN----DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGL 455 (667)
Q Consensus 383 ~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 455 (667)
+.+...|...+++++|..+|+++... ..-++ ..+++.|-.+|.+.|++++|...++...+
T Consensus 245 ~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~------------- 311 (508)
T KOG1840|consen 245 NILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALE------------- 311 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH-------------
Confidence 34667788889999999999887642 11111 13444455555666666665555443321
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCC-CCc-chHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCH----HHHHHHHHH
Q 005966 456 IDIYSKCGSLESAHKIFSEIPIKD-KDI-VVWSVIIAGYGMHGHGETAVSLFKEMVQS---GVQPNE----VTFTSALHA 526 (667)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~----~~~~~ll~~ 526 (667)
+++...... |.+ ..++.++..++..+++++|..++++..+. -+.++. .+++.|...
T Consensus 312 ---------------I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l 376 (508)
T KOG1840|consen 312 ---------------IYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAEL 376 (508)
T ss_pred ---------------HHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 122111110 222 23455566677777778877777765542 122232 468889999
Q ss_pred HhccCCHHHHHHHHHHhHHhc----C-CCCc-hhHHHHHHHHHhhcCChHHHHHHHHhC--------CCCCCH-HHHHHH
Q 005966 527 CSHGGLLDEGLDLFNFMLENH----Q-TCSR-ADHYTCIVDLLGRAGRLDEAYDLIRTM--------PLKPTH-AVWGAL 591 (667)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~~~~----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~l 591 (667)
|.+.|++++|.+++++++... + ..+. ...++.|...|.+.+++++|.++|.+. +..|+. .+|..|
T Consensus 377 ~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL 456 (508)
T KOG1840|consen 377 YLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNL 456 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence 999999999999999887632 1 1122 345677888899999999888888876 134443 478999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhc
Q 005966 592 LGACVIHGNVELGEVAAKWLFE 613 (667)
Q Consensus 592 ~~~~~~~g~~~~A~~~~~~~~~ 613 (667)
...|...|++|.|+++.+++..
T Consensus 457 ~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 457 AALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHcccHHHHHHHHHHHHH
Confidence 9999999999999999998863
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=5.7e-06 Score=83.61 Aligned_cols=231 Identities=12% Similarity=0.038 Sum_probs=135.5
Q ss_pred hHhhhcCChhhHHHhhcccCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHcCC--------CCCCcccHHHHHHHhcc
Q 005966 52 SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGE--------YNPDNYTYPIVIKACTD 123 (667)
Q Consensus 52 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------~~~~~~~~~~ll~~~~~ 123 (667)
.+|..-|+++.|-+...-+. +...|..|.+.|.+..+.+-|.-.+-.|....| -.|+ .+=..+.-....
T Consensus 736 SfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 78888899999877665443 446799999999999888877777666643211 1122 222223333357
Q ss_pred ccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCC-hhhHHHHHHHHHHcCChhHHHHHHHH
Q 005966 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHS-VVSWNTLISGYFKNAYAKEALVVFDW 202 (667)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~ 202 (667)
.|.+++|..+|.+-.+.. .|-..|...|.+++|.++-+.-.+-. -.+|......+-..++.+.|++.|++
T Consensus 813 LgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 799999999999887664 45567888899999999877543322 23666677777778889999888876
Q ss_pred HHHCC-------------------CCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCH
Q 005966 203 MLKSG-------------------VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSV 263 (667)
Q Consensus 203 m~~~g-------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 263 (667)
..... -+.|...|.---.-+...|+.+.|..+++.+.+ |-.+++..|-.|+.
T Consensus 884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~ 954 (1416)
T KOG3617|consen 884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKT 954 (1416)
T ss_pred cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCc
Confidence 42110 011112222222222333444444444433221 23334444444444
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 005966 264 NEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQ 305 (667)
Q Consensus 264 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 305 (667)
++|-++-++- .|..+...+.+.|-..|++.+|..+|.+.+
T Consensus 955 ~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 955 DKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4444443332 244444555556666666666666665553
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.17 E-value=1.6e-08 Score=96.55 Aligned_cols=234 Identities=12% Similarity=-0.006 Sum_probs=162.1
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHH
Q 005966 393 GLARKAVELFRQMLVEV-VEPN--DATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAH 469 (667)
Q Consensus 393 ~~~~~A~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 469 (667)
+..+.++.-+.++.... ..|+ ...|......+...|+.+.|...|+...+.. +.+...++.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566777777776532 2222 2346666667788888999988888888765 556788899999999999999999
Q ss_pred HHHhhCCCCCCC-cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 005966 470 KIFSEIPIKDKD-IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQ 548 (667)
Q Consensus 470 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 548 (667)
..|++..+..|+ ..+|..+..++...|++++|++.+++..+. .|+..........+...++.++|...+.+... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 999998887665 567888888899999999999999999986 45443222222334567889999999977654 2
Q ss_pred CCCchhHHHHHHHHHhhcCChH--HHHHHHHhC-C----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC-CCC
Q 005966 549 TCSRADHYTCIVDLLGRAGRLD--EAYDLIRTM-P----LKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEP-ENP 619 (667)
Q Consensus 549 ~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~-~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~ 619 (667)
.+|+...+ .+.. ...|++. ++++.+.+. . ..| ....|..++..+...|++++|+..|+++++.+| +.+
T Consensus 195 ~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 23333222 2332 3345443 334333322 2 122 335788999999999999999999999999997 555
Q ss_pred chHHHHHHHHhhcCC
Q 005966 620 GNYVLLSKLYSAVRR 634 (667)
Q Consensus 620 ~~~~~l~~~~~~~g~ 634 (667)
.+...++.+....++
T Consensus 272 e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 272 EHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHHhh
Confidence 566666655544333
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.15 E-value=1e-09 Score=102.88 Aligned_cols=194 Identities=14% Similarity=0.076 Sum_probs=100.0
Q ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-C--CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 005966 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD-K--DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522 (667)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 522 (667)
+|.......+...+...++-+.+..-+++..... + +....-.....+...|++++|++++++. .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 4444444444433333344444554444433322 1 1111122223344456666666665432 23445555
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCchhH---HHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 005966 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADH---YTCIVDLLGRAGRLDEAYDLIRTMP--LKPTHAVWGALLGACVI 597 (667)
Q Consensus 523 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~ 597 (667)
.+..|.+.++++.|.+.++.|.+ ...|... ..+++..+.-.+.+.+|..+|+++. ..+++.+++.++.++..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~ 213 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ 213 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 56666666667767666666654 1122221 1222333333345677777777662 34566666666666677
Q ss_pred cCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCc-hHHHHHHHHhhhC
Q 005966 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRW-KDAENVRDVMDEK 648 (667)
Q Consensus 598 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 648 (667)
.|++++|+..++++++.+|.++.++..++.+....|+. +.+.+++.++.+.
T Consensus 214 ~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 77777777777777777777777777777666666666 4455666666553
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=1.7e-09 Score=104.36 Aligned_cols=222 Identities=15% Similarity=0.065 Sum_probs=172.0
Q ss_pred hCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHH
Q 005966 425 AILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVS 503 (667)
Q Consensus 425 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~ 503 (667)
.+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+.+..+..| +......|...|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45566667776777666655 55667777777777888888888888888887765 46778888889999999999999
Q ss_pred HHHHHHHcCCCC--------CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHH
Q 005966 504 LFKEMVQSGVQP--------NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDL 575 (667)
Q Consensus 504 ~~~~m~~~~~~p--------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 575 (667)
.++..+...++- +...-.. ..+.....+.+..++|-.+....+..+|.++...|.-.|--.|.+++|++.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 999887643210 0000000 122223344556666766666567668888899999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 576 IRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 576 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
|+.+ ..+| |..+|+.|+..+....+.++|+..|.+++++.|.-..+.+.|+-.|...|.|+||.++|-.++...
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 9987 6777 667899998888888899999999999999999999999999999999999999999988876543
No 91
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.5e-07 Score=84.14 Aligned_cols=270 Identities=11% Similarity=-0.004 Sum_probs=187.8
Q ss_pred CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHH
Q 005966 376 KKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDAT-LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTG 454 (667)
Q Consensus 376 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (667)
+.|+.....+...+...|+.++|+..|++... +.|+..+ .....-.+.+.|+++....+...+.... ..+...+-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 33444466777778888888888888887663 3343322 1111122345677777666666654332 122222222
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 005966 455 LIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533 (667)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 533 (667)
-...+....+++.|..+-++.....| +...|-.-...+...|++++|.-.|+...... +-+..+|..|+.+|...|++
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 33444556778888888777666543 34455555567788899999999998887742 23567899999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCchhHHHHHH-HHHh-hcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 005966 534 DEGLDLFNFMLENHQTCSRADHYTCIV-DLLG-RAGRLDEAYDLIRTM-PLKPTHA-VWGALLGACVIHGNVELGEVAAK 609 (667)
Q Consensus 534 ~~A~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~ 609 (667)
.+|.-+-+...+ -++.+..+...++ ..+. .-.--++|..++++. .+.|+.. ..+.+...|...|..+.++.+++
T Consensus 385 kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 999888887776 3444555555553 3333 333457788888876 6788654 67778888999999999999999
Q ss_pred HhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCCcc
Q 005966 610 WLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRK 652 (667)
Q Consensus 610 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 652 (667)
+.+...|| ...+..|++++.....+++|.+.|....+.+++.
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 99999998 6788999999999999999999999888766543
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.10 E-value=4.3e-08 Score=98.82 Aligned_cols=255 Identities=13% Similarity=0.052 Sum_probs=149.0
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc-----C
Q 005966 390 VHNGLARKAVELFRQMLVEVVEPND-ATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC-----G 463 (667)
Q Consensus 390 ~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g 463 (667)
...|++++|++.+++-.. ..+|. .........+.+.|+.++|..++..+++.+ +.+..-|..+..+.+-. .
T Consensus 15 ~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence 344555555555544222 12222 233334444555555555555555555554 33333344444443211 2
Q ss_pred CHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 005966 464 SLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHG-ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF 542 (667)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 542 (667)
..+...++|+++....|.......+.-.+.....+ ..+..++..+...|+++ +|..+-..|....+.+-..+++..
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred cHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHH
Confidence 34555566666555444433333332222221122 23555666677777543 455555555555555555555555
Q ss_pred hHHhc-------------CCCCchhHH--HHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 005966 543 MLENH-------------QTCSRADHY--TCIVDLLGRAGRLDEAYDLIRTM-PLKPT-HAVWGALLGACVIHGNVELGE 605 (667)
Q Consensus 543 ~~~~~-------------~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~ 605 (667)
..... .-+|+...| ..+...|...|++++|++++++. ...|+ +..|..-++.+-+.|++++|.
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 44311 123444334 44567778888888888888876 55564 556777777888888888888
Q ss_pred HHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 606 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
+.++.+.++++.|...-.-.+.-+.+.|+.++|.+.+....+.+.
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 888888888888888888888888888888888888888877664
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=8.3e-07 Score=85.58 Aligned_cols=249 Identities=13% Similarity=0.084 Sum_probs=145.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCC------CchHHHHH
Q 005966 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS------VVEVSTGL 455 (667)
Q Consensus 382 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l 455 (667)
...+.....+..++..|++.+....+.. -+..-++..-.++...|.+...........+.|... -...+..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4455666666777777777777776543 333334445556667777666666555544433211 01112223
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHH
Q 005966 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV-TFTSALHACSHGGLLD 534 (667)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~ 534 (667)
..+|.+.++++.++..|.+......++. ...+....+++++..+...-. .|... -...-...+.+.|++.
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHH
Confidence 3456666777777777776544322211 122233344454444444332 23321 1222245567778888
Q ss_pred HHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005966 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTH-AVWGALLGACVIHGNVELGEVAAKWLF 612 (667)
Q Consensus 535 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 612 (667)
.|+..|.++++ ..|.|...|....-+|.+.|.+..|+.-.+.. ...|+. ..|..=+.++....+++.|.+.|++++
T Consensus 376 ~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 376 EAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877 34566777888888888888888888776665 455543 344444555556677888888888888
Q ss_pred ccCCCCCchHHHHHHHHhhcCCchHHHHHHH
Q 005966 613 ELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643 (667)
Q Consensus 613 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 643 (667)
+.+|++..+...+..++..........++.+
T Consensus 454 e~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred hcCchhHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence 8888877777777776665333333333333
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=6.8e-08 Score=82.61 Aligned_cols=196 Identities=15% Similarity=0.015 Sum_probs=105.6
Q ss_pred HHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCCh
Q 005966 420 LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHG 498 (667)
Q Consensus 420 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 498 (667)
+.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|+...+..| +..+.|....-+|..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 3444555555555555555555544 34445555555666666666666666665555443 345555555556666666
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHH
Q 005966 499 ETAVSLFKEMVQSGVQPN-EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIR 577 (667)
Q Consensus 499 ~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 577 (667)
++|...|++....-.-|. ..+|..+.-+..+.|+.+.|...|++.++ ..+........+.....+.|++-.|..+++
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 666666666555321121 13455555555566666666666666655 222223344455555556666666666655
Q ss_pred hC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 005966 578 TM--PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPEN 618 (667)
Q Consensus 578 ~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 618 (667)
.. ...++...+...+..-...||.+.+-+.-.++.+..|..
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 54 233455555555555555566666655555555555553
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.08 E-value=2.6e-07 Score=83.47 Aligned_cols=322 Identities=13% Similarity=0.094 Sum_probs=176.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHH---HHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 005966 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMI---NGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSA 322 (667)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 322 (667)
++.-..-+.+.+...|++.+|+.-|....+.|+..|.++. ..|...|+...|+.-+.+..+ ++||-..-. +.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~AR--iQ- 111 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAAR--IQ- 111 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHH--HH-
Confidence 3444455666777889999999999998888877777664 578888888888888888776 466643211 00
Q ss_pred hhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHH
Q 005966 323 CSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELF 402 (667)
Q Consensus 323 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 402 (667)
-...+.+.|.++.|..-|+.+.+.++.. |...+|.+-+
T Consensus 112 -------------------------------Rg~vllK~Gele~A~~DF~~vl~~~~s~-----------~~~~eaqskl 149 (504)
T KOG0624|consen 112 -------------------------------RGVVLLKQGELEQAEADFDQVLQHEPSN-----------GLVLEAQSKL 149 (504)
T ss_pred -------------------------------hchhhhhcccHHHHHHHHHHHHhcCCCc-----------chhHHHHHHH
Confidence 1123445555555555555544333211 0011111100
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-CC
Q 005966 403 RQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD-KD 481 (667)
Q Consensus 403 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 481 (667)
.... ........+..+...|+...|+.....+++.. +.+...+..-..+|...|++..|+.-++...... -+
T Consensus 150 ~~~~------e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn 222 (504)
T KOG0624|consen 150 ALIQ------EHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN 222 (504)
T ss_pred HhHH------HHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc
Confidence 0000 00112223334445556666665555555543 4455555555666666666666665555444332 23
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH----HHHH---------HHHHhccCCHHHHHHHHHHhHHhcC
Q 005966 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT----FTSA---------LHACSHGGLLDEGLDLFNFMLENHQ 548 (667)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~l---------l~~~~~~g~~~~A~~~~~~~~~~~~ 548 (667)
....--+-..+...|+.+.++...++-++. .||... |..| +......++|.++++..+...+...
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 344444455555666666666666665553 444421 1111 0112344566666666666655211
Q ss_pred CCC--chhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHH
Q 005966 549 TCS--RADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPT-HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV 623 (667)
Q Consensus 549 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 623 (667)
..+ ....+..+-.++...|++-+|++...+. ...|| ..++..-..+|.....++.|+.-|+++.+.+|+|..+-.
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 101 1112333445566677777777777665 45554 567777777777777777788878877777777654433
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=9.1e-06 Score=82.23 Aligned_cols=410 Identities=11% Similarity=0.076 Sum_probs=209.1
Q ss_pred CCCCcchHHHHHH--HHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHh--------
Q 005966 71 SERSSFLYNTVMK--MYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLIT-------- 140 (667)
Q Consensus 71 ~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------- 140 (667)
.+-|..+-..++. .|..-|+.+.|.+..+.+.. ...|..+.+.|.+.++++-|+-.+..|...
T Consensus 722 e~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~ 794 (1416)
T KOG3617|consen 722 ENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRR 794 (1416)
T ss_pred cccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHH
Confidence 3446666666664 46667777777776665543 346777777777777777777666555322
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005966 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLP 220 (667)
Q Consensus 141 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 220 (667)
..+.+...-....-.-...|.+++|+.++.+-.+ |..|=..|-..|.+++|+++-+.--+ +. -..||..-..
T Consensus 795 a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 795 AQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAK 866 (1416)
T ss_pred HHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHH
Confidence 1111112222222233455666666666655432 33344445556666666665443211 11 1234444444
Q ss_pred HcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHH
Q 005966 221 ACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGL 300 (667)
Q Consensus 221 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 300 (667)
-+...++.+.|.+.|+....+. ..+...|. .++.....+.+++. |...|.-...-+-..|+.+.|+.+
T Consensus 867 ~Lear~Di~~AleyyEK~~~ha----fev~rmL~------e~p~~~e~Yv~~~~--d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHA----FEVFRMLK------EYPKQIEQYVRRKR--DESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChH----HHHHHHHH------hChHHHHHHHHhcc--chHHHHHHHHHHhcccchHHHHHH
Confidence 4445555565655555432110 11111111 12222333333333 334444455555567888888888
Q ss_pred HHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcc
Q 005966 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380 (667)
Q Consensus 301 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 380 (667)
|...++ |-++++..|-.|..++|.++-++ .-|....-.+.+.|-..|++.+|..+|.+...
T Consensus 935 Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---- 995 (1416)
T KOG3617|consen 935 YSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---- 995 (1416)
T ss_pred HHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----
Confidence 877754 44556666677777777776554 33455555677888888888888888876541
Q ss_pred cHHHHHHHH-------------HhCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHH------
Q 005966 381 PWNAILAGC-------------VHNG--LARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCY------ 439 (667)
Q Consensus 381 ~~~~li~~~-------------~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~------ 439 (667)
+..-|+.| ...| +.-.|-..|++. |. -+...+..|.+.|.+.+|+++--.
T Consensus 996 -fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~a 1066 (1416)
T KOG3617|consen 996 -FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSA 1066 (1416)
T ss_pred -HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHH
Confidence 12222211 1111 222233333332 11 112233345566666666554211
Q ss_pred --HHH--hCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHH-cCCC
Q 005966 440 --LIR--YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ-SGVQ 514 (667)
Q Consensus 440 --~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~ 514 (667)
++. .....|+...+.-.+.++...++++|..++-...+ |...+.. |...+..-..++-+.|.- ++-.
T Consensus 1067 L~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~-------~~~Alql-C~~~nv~vtee~aE~mTp~Kd~~ 1138 (1416)
T KOG3617|consen 1067 LDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE-------FSGALQL-CKNRNVRVTEEFAELMTPTKDDM 1138 (1416)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHH-HhcCCCchhHHHHHhcCcCcCCC
Confidence 112 22234566666666667777777777666644332 2222222 233333323333333321 1123
Q ss_pred CCH----HHHHHHHHHHhccCCHHHHHHHHHHh
Q 005966 515 PNE----VTFTSALHACSHGGLLDEGLDLFNFM 543 (667)
Q Consensus 515 p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~ 543 (667)
|+. ..+..+...|.++|.+..|.+-|.++
T Consensus 1139 ~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1139 PNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred ccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 333 34566777888899988888777655
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.99 E-value=7.3e-07 Score=88.84 Aligned_cols=261 Identities=11% Similarity=-0.036 Sum_probs=164.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHH---HHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 005966 386 LAGCVHNGLARKAVELFRQMLVEVVEPND-ATLNS---LLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461 (667)
Q Consensus 386 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (667)
...+...|++++|.+.+++..+. .|+. ..+.. ........+....+.+.+.. .....+........+...+..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 34556678999999999988765 3433 33331 11111224455555555443 111112233444566678889
Q ss_pred cCCHHHHHHHHhhCCCCCCC-cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH--HHHHHHHHHHhccCCHHHHH
Q 005966 462 CGSLESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQ-PNE--VTFTSALHACSHGGLLDEGL 537 (667)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~--~~~~~ll~~~~~~g~~~~A~ 537 (667)
.|++++|...+++.....|+ ...+..+...+...|++++|...+++....... |+. ..|..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999998887754 567788888999999999999999998875321 232 24557788889999999999
Q ss_pred HHHHHhHHhcCCCCchhHH-H--HHHHHHhhcCChHHHHHH--H-HhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHH
Q 005966 538 DLFNFMLENHQTCSRADHY-T--CIVDLLGRAGRLDEAYDL--I-RTM-PLKP---THAVWGALLGACVIHGNVELGEVA 607 (667)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~ 607 (667)
.+++++.......+..... + .+...+...|..+.+.+. + ... ...| ..........++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999986422211222111 1 223333344433222222 1 111 1101 112223566677889999999999
Q ss_pred HHHhhccCC---------CCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 608 AKWLFELEP---------ENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 608 ~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
++.+....- .........+.++...|++++|.+.+.+.....
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 988755221 134566778888999999999999999887654
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.2e-06 Score=84.48 Aligned_cols=101 Identities=20% Similarity=0.093 Sum_probs=53.2
Q ss_pred HhhhcCChhhHHHhhcccC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHH
Q 005966 53 LVRAYGHVSNVRILFDEMS---ERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKL 129 (667)
Q Consensus 53 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 129 (667)
.....|+++.|..+|.+.. .+|-+.|+.-..+|++.|++++|++--.+-++. .|.-.-.|+....++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHH
Confidence 3344456666666665532 235555555566666666666666555555543 12223455555555555566666
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHH
Q 005966 130 GIALHGRVLITGFDMDTFVGNCLIAMY 156 (667)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~~~li~~~ 156 (667)
|..-|..-++.. +.+...++-+..++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 666665555554 33444444444444
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.96 E-value=3.8e-08 Score=87.10 Aligned_cols=121 Identities=10% Similarity=0.062 Sum_probs=93.8
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--HHH
Q 005966 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGA-CVIHGN--VEL 603 (667)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~--~~~ 603 (667)
..++.+++...++...+ ..+.+...|..++..|...|++++|...+++. ...| +...+..+..+ +...|+ .++
T Consensus 51 ~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 51 SQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred CchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 35667777777777776 45567778888888888888888888888877 4555 56667777665 356666 588
Q ss_pred HHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCCc
Q 005966 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651 (667)
Q Consensus 604 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 651 (667)
|.++++++++.+|+++.++..++..+.+.|++++|+..++++.+....
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 888888888888888888888888888888888888888888876654
No 100
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=2.1e-06 Score=76.30 Aligned_cols=382 Identities=13% Similarity=0.009 Sum_probs=197.5
Q ss_pred cccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHH-HHHHHhCCChHHHH
Q 005966 222 CGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE--RDVVTWTSM-INGYALNGDVRNAL 298 (667)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~~~~~~a~ 298 (667)
+.+..+++.+.+++..-.+.. +.+....+.|..+|....++..|-..++++.. |...-|... ...+.+.+.+.+|+
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 333334444444443333332 22455667777778888888888888888765 444444332 34566778888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccC-CC
Q 005966 299 GLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTS-KK 377 (667)
Q Consensus 299 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~ 377 (667)
++...|.+. |+...-..-+.+.. ....+++..+..++++.. +.
T Consensus 99 rV~~~~~D~---~~L~~~~lqLqaAI---------------------------------kYse~Dl~g~rsLveQlp~en 142 (459)
T KOG4340|consen 99 RVAFLLLDN---PALHSRVLQLQAAI---------------------------------KYSEGDLPGSRSLVEQLPSEN 142 (459)
T ss_pred HHHHHhcCC---HHHHHHHHHHHHHH---------------------------------hcccccCcchHHHHHhccCCC
Confidence 888887542 22211111111111 111233333333333333 12
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCC---------
Q 005966 378 KTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSV--------- 448 (667)
Q Consensus 378 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------- 448 (667)
+..+.+.......+.|+++.|++-|+...+-+---....|+..+ +..+.+++..|.+...++++.|+..-
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~t 221 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTT 221 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCcccee
Confidence 22223333333334444444444444443322111222333222 22233444444444444443322110
Q ss_pred -------------------chHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---CCcchHHHHHHHHHHcCChHHHHHHHH
Q 005966 449 -------------------VEVSTGLIDIYSKCGSLESAHKIFSEIPIKD---KDIVVWSVIIAGYGMHGHGETAVSLFK 506 (667)
Q Consensus 449 -------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 506 (667)
+..++.-...+.+.|+++.|.+.+..|+.+. .|++|...+.-.- ..+++.+..+-+.
T Consensus 222 egiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLq 300 (459)
T KOG4340|consen 222 EGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQ 300 (459)
T ss_pred ccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHH
Confidence 1223333445678899999999999998764 5777766554332 2345556666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHh-hcCChHHHHHHHHhCCCCCCH
Q 005966 507 EMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLG-RAGRLDEAYDLIRTMPLKPTH 585 (667)
Q Consensus 507 ~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~ 585 (667)
-+++.++ -...||..++-.|++..-++-|..++.+-....-.-.+...|+ |++++. -.-..++|++-+..+...-..
T Consensus 301 FLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~ 378 (459)
T KOG4340|consen 301 FLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTE 378 (459)
T ss_pred HHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 6666543 3356898899999999988888887654322000012233333 344444 345677777666654211011
Q ss_pred HHHHHHHHH--HHhcCC---HHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 586 AVWGALLGA--CVIHGN---VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 586 ~~~~~l~~~--~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
......+.. -...++ ...|++-++..+++-- .+....++.|....++.-+.+.|..-.+
T Consensus 379 kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 379 KLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 111111111 111122 2334445555555542 3677889999999999999999987554
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.90 E-value=8.5e-08 Score=90.02 Aligned_cols=248 Identities=14% Similarity=0.051 Sum_probs=155.8
Q ss_pred HhcCCHHHHHHHHhccCCCCcc----cHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHH
Q 005966 359 AKCNLVKLSFQVFARTSKKKTV----PWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAM 434 (667)
Q Consensus 359 ~~~g~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 434 (667)
.-.|.+..++.-.+ ....+.. ...-+.+++...|+.+.++ .++... -.|.......+...+....+-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHH
Confidence 34566666664433 1111111 1334556667777666443 333322 2566666655555454444444554
Q ss_pred HHHHHHHHhCCC-CCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 005966 435 NIHCYLIRYGFL-SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV 513 (667)
Q Consensus 435 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 513 (667)
.-++........ .+.........++...|++++|.+++... .+.......+..+.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-- 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQI-- 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 444433322222 23333334445677789999998888764 35566677888999999999999999999874
Q ss_pred CCCHHHHHHHHHHHh----ccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHH
Q 005966 514 QPNEVTFTSALHACS----HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAV 587 (667)
Q Consensus 514 ~p~~~~~~~ll~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 587 (667)
..| .+...+..++. -.+.+.+|..+|+++.+ ..++++.+.+.+..+....|++++|.+++.+. ...| ++.+
T Consensus 161 ~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 161 DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 334 34444444433 23479999999999876 45678888999999999999999999998886 4445 6667
Q ss_pred HHHHHHHHHhcCCH-HHHHHHHHHhhccCCCCCc
Q 005966 588 WGALLGACVIHGNV-ELGEVAAKWLFELEPENPG 620 (667)
Q Consensus 588 ~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~~~~ 620 (667)
+-.++-+....|+. +.+.+.+.++....|++|.
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence 77787777888877 7788999999999998543
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.90 E-value=1.5e-07 Score=87.33 Aligned_cols=185 Identities=10% Similarity=-0.013 Sum_probs=119.8
Q ss_pred CchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCc----chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHH
Q 005966 448 VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDI----VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE--VTFT 521 (667)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~ 521 (667)
....+..++..+.+.|++++|...|+++....|+. ..+..+..++...|++++|+..++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 34455556666777777777777777666554432 35566677777778888888888887765321111 1344
Q ss_pred HHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 005966 522 SALHACSHG--------GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLG 593 (667)
Q Consensus 522 ~ll~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 593 (667)
.+..++... |++++|.+.++.+.+... .+...+..+..... ..... ......+..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a~ 174 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP--NSEYAPDAKKRMDY----LRNRL-----------AGKELYVAR 174 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC--CChhHHHHHHHHHH----HHHHH-----------HHHHHHHHH
Confidence 444444433 677888888888876322 22222222211100 11100 011235666
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCC---chHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 594 ACVIHGNVELGEVAAKWLFELEPENP---GNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 594 ~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
.+.+.|+++.|+..++++++..|+++ .++..++.+|.+.|++++|.++++.+....
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 78899999999999999999987754 688999999999999999999999887654
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.90 E-value=0.00018 Score=81.64 Aligned_cols=191 Identities=9% Similarity=-0.099 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhH--HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhccc
Q 005966 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVT--WTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLY 327 (667)
Q Consensus 250 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 327 (667)
+......+...|++.+|..........+... ...........|+++.+...+..+.......+..........+...|
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 3344455667788887777666665432211 11122334456777776666665421111112222222233344556
Q ss_pred chHHHHHHHHHHHHhcCC------CC--chHHhHHHHHHHhcCCHHHHHHHHhccCC----CCc----ccHHHHHHHHHh
Q 005966 328 YLKRGRSLHAWTIKQNLE------CE--VIVETALIDMYAKCNLVKLSFQVFARTSK----KKT----VPWNAILAGCVH 391 (667)
Q Consensus 328 ~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~----~~~~~li~~~~~ 391 (667)
+.+++...+......--. +. ......+...+...|+++.|...+++... .+. ...+.+...+..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 503 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC 503 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 777776666655432110 00 11111222334455666666655554321 111 012333444455
Q ss_pred CCChHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHhCcCCHHHHHHHHHHH
Q 005966 392 NGLARKAVELFRQMLVEVV---EP--NDATLNSLLPAYAILADLQQAMNIHCYL 440 (667)
Q Consensus 392 ~~~~~~A~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 440 (667)
.|++++|...+.+.....- .+ ...++..+...+...|+++.|...++..
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 557 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKA 557 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5666666665555443210 00 1122333344445555666655555544
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.89 E-value=2e-06 Score=85.71 Aligned_cols=191 Identities=11% Similarity=0.067 Sum_probs=134.0
Q ss_pred CCChhHHHHHHHHhhccCChhhHhHHHHHHHHhCCCc------hhhhhhHhhhcCChhhHHHhhcccCC--C-CcchHHH
Q 005966 10 PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF------THLRSSLVRAYGHVSNVRILFDEMSE--R-SSFLYNT 80 (667)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 80 (667)
|....++..++..+...++.+.+...+.++.+..+.+ .++....+...|++++|...+++... | |..++..
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4456778888888888888888888888877776644 22222667788999999998887542 2 3334442
Q ss_pred HHHHHH----hCCCchHHHHHHHHhHHcCCCCCCc-ccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 005966 81 VMKMYA----QNGASHDSLKMFLGMLRLGEYNPDN-YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAM 155 (667)
Q Consensus 81 l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 155 (667)
...+. ..+..+.+.+.++... ...|+. .....+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i 157 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPLWA---PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHV 157 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhccC---cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 22222 2455555555555421 223333 334455567788999999999999999987 5667788888899
Q ss_pred HHhcCCHHHHHHHhcccCCC-----Ch--hhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005966 156 YMNFGEVKAARKVFDAMWEH-----SV--VSWNTLISGYFKNAYAKEALVVFDWMLK 205 (667)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~ 205 (667)
|...|++++|...++...+. +. ..|-.+...+...|++++|+.++++...
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 99999999999998876432 21 2355678889999999999999999854
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.85 E-value=3.8e-05 Score=69.90 Aligned_cols=173 Identities=9% Similarity=0.035 Sum_probs=95.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 005966 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461 (667)
Q Consensus 382 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (667)
+..-..+|...|++..|+.-++...+.. .-+..++-.+-..+...|+.+.++...++..+.+ |+-..... .|
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~---~Y-- 263 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFP---FY-- 263 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHH---HH--
Confidence 4455566667777777766655554332 1222333334444455555555555544444332 22111100 00
Q ss_pred cCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHhccCCHHHHHH
Q 005966 462 CGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV---TFTSALHACSHGGLLDEGLD 538 (667)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~g~~~~A~~ 538 (667)
.++.+..+.++. +......++|.++++..+...+........ .+..+-.++...|++.+|++
T Consensus 264 -KklkKv~K~les--------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 264 -KKLKKVVKSLES--------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred -HHHHHHHHHHHH--------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 011111111111 122355677778888888777754331222 24445556677788888888
Q ss_pred HHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC
Q 005966 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (667)
...+++. -.+.|+.++.--..+|.-...++.|+.-|++.
T Consensus 329 qC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 329 QCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred HHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8888876 33344777777888888888888888888877
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.84 E-value=7.9e-08 Score=80.43 Aligned_cols=122 Identities=8% Similarity=-0.016 Sum_probs=70.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CC
Q 005966 503 SLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PL 581 (667)
Q Consensus 503 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 581 (667)
.++++.++. .|+. +..+...+...|++++|...|+.+.. ..+.+...|..++.++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344555443 3332 33445555666666666666666655 33345555666666666666666666666665 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHh
Q 005966 582 KP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630 (667)
Q Consensus 582 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 630 (667)
.| +...+..+..++...|+.++|+..++++++..|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 33 45556666666666666666666666666666666666655555443
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.82 E-value=9.6e-08 Score=79.91 Aligned_cols=109 Identities=10% Similarity=-0.037 Sum_probs=92.2
Q ss_pred HHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 005966 537 LDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFEL 614 (667)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 614 (667)
..++++..+ ..|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|+..+++++++
T Consensus 13 ~~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345666655 2244 3556788889999999999999987 4555 7778899999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 615 EPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 615 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
+|+++.++..++.++...|++++|++.+++..+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999887654
No 108
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=1.3e-05 Score=71.40 Aligned_cols=350 Identities=15% Similarity=0.064 Sum_probs=159.2
Q ss_pred ccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCC--CChhhHHH-HHHHHH
Q 005966 112 YTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE--HSVVSWNT-LISGYF 188 (667)
Q Consensus 112 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~ 188 (667)
.-+.+.+..+.+..++..|++++..-.+.. +.+....+.|..+|-+..++..|-..++++.. |...-|.. -...+.
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 334555555555566666666655555443 23444555555555566666666655555532 22222221 123444
Q ss_pred HcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHH
Q 005966 189 KNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARL 268 (667)
Q Consensus 189 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 268 (667)
+.+.+..|+.+...|... |+...-..-+.+. .....+++..+..
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaA---------------------------------IkYse~Dl~g~rs 133 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAA---------------------------------IKYSEGDLPGSRS 133 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHH---------------------------------HhcccccCcchHH
Confidence 555556666655555431 2211111111111 1122344555555
Q ss_pred HHhhcCC-CChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCC
Q 005966 269 VFDRMSE-RDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECE 347 (667)
Q Consensus 269 ~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 347 (667)
++++.+. .+..+.+.......+.|+++.|++-|+...+-+---....|+..+..| +.++.+.|.+...++++.|++..
T Consensus 134 LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~H 212 (459)
T KOG4340|consen 134 LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQH 212 (459)
T ss_pred HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcC
Confidence 5555542 333333333333445555555555555554432222233344333332 23445555555555555544322
Q ss_pred chHHh----HHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 005966 348 VIVET----ALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVE-VVEPNDATLNSLLP 422 (667)
Q Consensus 348 ~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~ 422 (667)
+..-- -.++.-.-.+-...+..-+ +..+|.-...+.+.++++.|.+.+.+|.-. .-..|.+|...+.-
T Consensus 213 PElgIGm~tegiDvrsvgNt~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al 285 (459)
T KOG4340|consen 213 PELGIGMTTEGIDVRSVGNTLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL 285 (459)
T ss_pred CccCccceeccCchhcccchHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH
Confidence 11100 0000000000000000000 001333444455667777777777776532 23456666655432
Q ss_pred HHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---CCcchHHHHHHHHHHcCChH
Q 005966 423 AYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD---KDIVVWSVIIAGYGMHGHGE 499 (667)
Q Consensus 423 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 499 (667)
.- ..+++....+-+..+...+ +-...+|..++-.||+..-++-|.+++.+-.... .+...|+.+=....-.-..+
T Consensus 286 ~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pE 363 (459)
T KOG4340|consen 286 MN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPE 363 (459)
T ss_pred hc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHH
Confidence 21 2334445555555555554 3456788888888888888888888887654432 23333333222222233455
Q ss_pred HHHHHHHHH
Q 005966 500 TAVSLFKEM 508 (667)
Q Consensus 500 ~a~~~~~~m 508 (667)
+|.+-++.+
T Consensus 364 ea~KKL~~L 372 (459)
T KOG4340|consen 364 EAFKKLDGL 372 (459)
T ss_pred HHHHHHHHH
Confidence 555544443
No 109
>PLN02789 farnesyltranstransferase
Probab=98.79 E-value=1.8e-06 Score=82.31 Aligned_cols=215 Identities=12% Similarity=0.073 Sum_probs=142.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcC-CHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCCh--HHHHH
Q 005966 428 ADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG-SLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHG--ETAVS 503 (667)
Q Consensus 428 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~--~~a~~ 503 (667)
+..++|......+++.. +-+..+++....++...| ++++++..++++....| +..+|+.....+.+.|+. ++++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 34444444444444433 222233333333444445 46777777777666553 445666555555555653 67788
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhc---CCh----HHHHHHH
Q 005966 504 LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA---GRL----DEAYDLI 576 (667)
Q Consensus 504 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~ 576 (667)
+++++.+... -|..+|.....++...|+++++++.++++++ ..+.+...|+....++.+. |.. ++++++.
T Consensus 130 ~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 130 FTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HCCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 8888888653 3667888888888888889999999999888 2335566677766665544 222 4566666
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcC-----------------
Q 005966 577 RTM-PLKP-THAVWGALLGACVIH----GNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR----------------- 633 (667)
Q Consensus 577 ~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g----------------- 633 (667)
.++ ...| +...|+.+...+... +...+|...+.++...+|.++.++..|+++|....
T Consensus 207 ~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~ 286 (320)
T PLN02789 207 IDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEEL 286 (320)
T ss_pred HHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccc
Confidence 444 5556 667888888888763 44567889999999999999999999999998643
Q ss_pred -CchHHHHHHHHhh
Q 005966 634 -RWKDAENVRDVMD 646 (667)
Q Consensus 634 -~~~~A~~~~~~~~ 646 (667)
..++|.++++.+.
T Consensus 287 ~~~~~a~~~~~~l~ 300 (320)
T PLN02789 287 SDSTLAQAVCSELE 300 (320)
T ss_pred ccHHHHHHHHHHHH
Confidence 2367888888774
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.78 E-value=5.4e-07 Score=79.05 Aligned_cols=153 Identities=12% Similarity=0.164 Sum_probs=79.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcC
Q 005966 488 IIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567 (667)
Q Consensus 488 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 567 (667)
+-..+...|+-+....+........ .-|.......+....+.|++.+|...+.+... ..++|...|+.+.-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 3344444555555554444433321 12333333445555555555555555555554 44455555555555555555
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHH
Q 005966 568 RLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRD 643 (667)
Q Consensus 568 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 643 (667)
++++|..-|.+. .+.| ++..++.+...+.-.||.+.|+..+..+....+.|+.+-..|+.+....|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 555555555544 3333 344455555555555555555555555555555555555555555555555555555543
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.74 E-value=8.3e-07 Score=93.28 Aligned_cols=128 Identities=13% Similarity=0.040 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 005966 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPT-HAVWGALLGA 594 (667)
Q Consensus 517 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~ 594 (667)
...+..|.....+.|.+++|..+++.+.+ -.|.+......++..+.+.+++++|+..+++. ...|+ ......+..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 44444444444555555555555555444 12122333344444455555555555555444 33332 2233333444
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 595 CVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 595 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
+.+.|++++|+.+|++++..+|+++.++..++.++.+.|+.++|...|++..
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555445555555555555555555555555555443
No 112
>PLN02789 farnesyltranstransferase
Probab=98.74 E-value=6.8e-07 Score=85.11 Aligned_cols=190 Identities=10% Similarity=0.085 Sum_probs=147.1
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCC-cchHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH--
Q 005966 458 IYSKCGSLESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHG-HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL-- 533 (667)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-- 533 (667)
.+...++.++|..+...+....|+ ..+|+.-...+...| ++++++..++++.+...+ +..+|+.-...+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 344567888999999998887664 467777777777777 679999999999987533 445666555555566653
Q ss_pred HHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----HHHH
Q 005966 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIH---GN----VELG 604 (667)
Q Consensus 534 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~----~~~A 604 (667)
+++..+++++++ ..+.+...|.....++.+.|++++|++.++++ ...| +...|+.......+. |. .+.+
T Consensus 125 ~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 678899989987 45567888999999999999999999999998 4444 677888877766554 22 3578
Q ss_pred HHHHHHhhccCCCCCchHHHHHHHHhh----cCCchHHHHHHHHhhhCCC
Q 005966 605 EVAAKWLFELEPENPGNYVLLSKLYSA----VRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 605 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 650 (667)
+....+++..+|+|.++|..+..++.. .++..+|.+.+.+..+.++
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 888889999999999999999999988 3556789898888776544
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=7.9e-07 Score=88.80 Aligned_cols=224 Identities=14% Similarity=-0.014 Sum_probs=171.3
Q ss_pred CCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHH
Q 005966 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490 (667)
Q Consensus 411 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 490 (667)
+|--..-..+...+...|-...|..+++++. .+.-++.+|...|+..+|..+..+-.++.|+...|..+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhh
Confidence 3333344455666677788888888887754 3445788888889888888888877776688888888887
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChH
Q 005966 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570 (667)
Q Consensus 491 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 570 (667)
......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+. .+-...+|..+.-+..+.++++
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhH
Confidence 777766778888777664332 1112222233468899999999888773 3344567888888888999999
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 571 EAYDLIRTM-PLKPT-HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 571 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
.|.+.|... ...|| ...|+++-.+|.+.|+..+|...++++++-+-++..+|....-+....|.|++|++.+.++.+.
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999998876 67775 4589999999999999999999999999998888899998888999999999999999998766
Q ss_pred CCcc
Q 005966 649 GLRK 652 (667)
Q Consensus 649 ~~~~ 652 (667)
...+
T Consensus 617 ~~~~ 620 (777)
T KOG1128|consen 617 RKKY 620 (777)
T ss_pred hhhc
Confidence 5443
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.69 E-value=2.2e-06 Score=91.49 Aligned_cols=202 Identities=14% Similarity=0.116 Sum_probs=154.8
Q ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-C-----CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 005966 446 LSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD-K-----DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT 519 (667)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 519 (667)
|.+...|-..+......++.++|+++.++....- + -...|.++++.-...|.-+...++|+++.+.- -....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 4455566667777777888888888887765431 1 23478888887777787888888888888742 12345
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 005966 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPT---HAVWGALLGAC 595 (667)
Q Consensus 520 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~ 595 (667)
|..|...|.+.+++++|.++++.|.+.++ .....|..+++.+.+..+-+.|.+++.++ ..-|. .......+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 77888888888999999999999988655 45566888888888888888888888776 43443 34556666667
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCCc
Q 005966 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651 (667)
Q Consensus 596 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 651 (667)
.+.||.+++..+|+-.+...|...+.|..+++.-.+.|+.+.++.+|+++...++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78899999999999999988888889998888888889999999999988877654
No 115
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.68 E-value=0.00076 Score=69.84 Aligned_cols=215 Identities=9% Similarity=-0.004 Sum_probs=139.7
Q ss_pred ccCChhhHhHHHHHHHHhCCCc---hhhhhhHhhhcCChhhHHHhhcccC---CCCcchHHHHHHHHHhCCCchHHHHHH
Q 005966 25 ATKSIAGTKQLHAFIITSGPLF---THLRSSLVRAYGHVSNVRILFDEMS---ERSSFLYNTVMKMYAQNGASHDSLKMF 98 (667)
Q Consensus 25 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~ 98 (667)
.++.+..|.+...++++.-|.. ..+..-...+.|+.++|..+++... ..|..+...+-.+|...|+.++|..+|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4566778888888888888877 2222266778899999999888753 237778888999999999999999999
Q ss_pred HHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC----------HHHHHHH
Q 005966 99 LGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGE----------VKAARKV 168 (667)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~ 168 (667)
++..+. .|+......+..++.+.+++.+-.+.--++-+. ++.+++.+=++++.+...-. ..-|.+.
T Consensus 101 e~~~~~---~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 101 ERANQK---YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHhh---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 999865 677777788888888888777655555455443 35555555556666544311 2234555
Q ss_pred hcccCCCC-----hhhHHHHHHHHHHcCChhHHHHHHH-HHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcC
Q 005966 169 FDAMWEHS-----VVSWNTLISGYFKNAYAKEALVVFD-WMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR 242 (667)
Q Consensus 169 ~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 242 (667)
++.+.+.+ ..-...-...+...|++++|++++. ..-+.-..-+...-+.-+..+...+++.+..++-..+...|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 55554433 1111122234456778888888883 33332222233344455555666677777777766666665
Q ss_pred C
Q 005966 243 L 243 (667)
Q Consensus 243 ~ 243 (667)
.
T Consensus 257 ~ 257 (932)
T KOG2053|consen 257 N 257 (932)
T ss_pred C
Confidence 3
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=8.3e-06 Score=78.18 Aligned_cols=115 Identities=20% Similarity=0.230 Sum_probs=79.9
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 005966 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPT-HAVWGALLGACVIHGNVEL 603 (667)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 603 (667)
.+...|++++|+..++.+++ ..|.|+..+...++.+.+.++.++|.+.++++ ...|+ ...+..+..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34556777777777777766 44455656666777777777777777777776 45665 4556667777777777777
Q ss_pred HHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHH
Q 005966 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642 (667)
Q Consensus 604 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 642 (667)
|+..++.....+|+||..|..|+.+|...|+..+|....
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 777777777777777777777777776666554444433
No 117
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=1.7e-06 Score=75.25 Aligned_cols=195 Identities=12% Similarity=0.163 Sum_probs=112.9
Q ss_pred CcCCHHHHHHHHHHHHH---hC-CCCCc-hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcc-hHHHHHHHHHHcCChH
Q 005966 426 ILADLQQAMNIHCYLIR---YG-FLSVV-EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIV-VWSVIIAGYGMHGHGE 499 (667)
Q Consensus 426 ~~~~~~~a~~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 499 (667)
...+.++..+++..+.. .| ..++. ..|..++-+....|+.+.|...++.+....|... .-..-..-+-..|+++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence 44567777777776653 23 33332 2344445555566777777777776665554332 2111222344556677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC
Q 005966 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 500 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (667)
+|+++|+.+++.+ +.|..++.-=+...-..|+--+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 7777777777665 33555555555555556666667666666666 45566666777777777777777777777766
Q ss_pred -CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHhhccCCCCCchHH
Q 005966 580 -PLKP-THAVWGALLGACVIHG---NVELGEVAAKWLFELEPENPGNYV 623 (667)
Q Consensus 580 -~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~ 623 (667)
-..| ++..+..+...+...| +.+.|.+.|.+++++.|.+...++
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 2334 4445555555543332 566667777777777765444443
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=2.4e-06 Score=75.14 Aligned_cols=134 Identities=17% Similarity=0.109 Sum_probs=114.4
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 005966 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM--PLKPTHAVWGAL 591 (667)
Q Consensus 514 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 591 (667)
.|+......+-..+...|+-+....+...... ..+.|......++....+.|++.+|...+++. ..+||...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 44333225566677788888888888887655 45566667777999999999999999999998 356689999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 592 LGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 592 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
..+|.+.|+++.|...|.+++++.|.+|.+...|+-.|.-.|+++.|..++.+....+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999987655
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=7e-06 Score=72.78 Aligned_cols=154 Identities=10% Similarity=0.123 Sum_probs=117.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 005966 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535 (667)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 535 (667)
+..|...|+++.+....+.+.. |. . .+...++.++++..+++.++.. +.|...|..+...|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~--~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD--PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC--cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 4467777877776555443322 11 0 1112566788888888888765 4467789999999999999999
Q ss_pred HHHHHHHhHHhcCCCCchhHHHHHHHHH-hhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005966 536 GLDLFNFMLENHQTCSRADHYTCIVDLL-GRAGR--LDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKW 610 (667)
Q Consensus 536 A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 610 (667)
|...|++..+ ..+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++
T Consensus 92 A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999988 3445677788888864 67777 59999999998 5566 667888888899999999999999999
Q ss_pred hhccCCCCCchH
Q 005966 611 LFELEPENPGNY 622 (667)
Q Consensus 611 ~~~~~p~~~~~~ 622 (667)
++++.|.+..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 999998866544
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.61 E-value=4.8e-07 Score=73.91 Aligned_cols=97 Identities=11% Similarity=0.002 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHh
Q 005966 553 ADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630 (667)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 630 (667)
....-.+...+...|++++|..+|+-. ...| +...|..|..+|...|++++|+..|.++..++|+||..+..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344555677788999999999999987 4566 66788999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHhhhCC
Q 005966 631 AVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~~ 649 (667)
..|+.++|++.|+.....-
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999876543
No 121
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=3.2e-06 Score=82.36 Aligned_cols=252 Identities=16% Similarity=0.106 Sum_probs=152.1
Q ss_pred HHhcCCHHHHHHHHhccCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhCcCCHHHH
Q 005966 358 YAKCNLVKLSFQVFARTSKKKTVP---WNAILAGCVHNGLARKAVELFRQMLVEVVEPND-ATLNSLLPAYAILADLQQA 433 (667)
Q Consensus 358 ~~~~g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a 433 (667)
+.+.|++.+|.-.|+.....++.. |.-|.......++-..|+..+++..+ +.|+. .....|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHHH
Confidence 345555666666665555444333 55555555555555555555555553 23322 3344444445555555555
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH-HcC
Q 005966 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV-QSG 512 (667)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-~~~ 512 (667)
...++..++..++-- +.. ..+++...-+. ..+..........++|-++. ..+
T Consensus 373 l~~L~~Wi~~~p~y~----------~l~---------------~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~ 425 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYV----------HLV---------------SAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLP 425 (579)
T ss_pred HHHHHHHHHhCccch----------hcc---------------ccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCC
Confidence 555555444331100 000 00000000000 11111112233444444444 444
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH-HHHH
Q 005966 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHA-VWGA 590 (667)
Q Consensus 513 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ 590 (667)
..+|+.....|.-.|--.|.+++|...|+.++. ..|-|..+||-|+..++...+.++|+..|+++ .++|..+ .+..
T Consensus 426 ~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125|consen 426 TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence 346777777777778888999999999999987 45567889999999999999999999999987 6888754 7788
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCC-----CC-----chHHHHHHHHhhcCCchHHHH
Q 005966 591 LLGACVIHGNVELGEVAAKWLFELEPE-----NP-----GNYVLLSKLYSAVRRWKDAEN 640 (667)
Q Consensus 591 l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~-----~~~~~l~~~~~~~g~~~~A~~ 640 (667)
|.-.|...|.+++|...|-.++.+.+. +. .+|..|=.++...++.+-+.+
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 504 LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 888999999999999999999877655 11 356666666666676664443
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=1.5e-06 Score=86.85 Aligned_cols=190 Identities=17% Similarity=0.204 Sum_probs=163.1
Q ss_pred hCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 005966 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS 522 (667)
Q Consensus 443 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 522 (667)
.+++|-...-..+...+...|-...|..+|+++. .|.-.|.+|+..|+..+|..+..+-.+. +|++..|..
T Consensus 392 ~~lpp~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 392 PHLPPIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 3456777777888999999999999999998754 4888999999999999999999988883 789999999
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005966 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGN 600 (667)
Q Consensus 523 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 600 (667)
+.+......-+++|.++.+..... .-..+.....+.++++++.+.++.. .+.| ...+|..+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh
Confidence 999888888899999998877552 1112223344589999999999875 5666 66799999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 601 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
++.|...|...+.++|++..+|+.+..+|.+.|+..+|...+++..+.+
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999998877
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=5.5e-06 Score=72.74 Aligned_cols=147 Identities=11% Similarity=0.053 Sum_probs=83.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHH----Hhh
Q 005966 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDL----LGR 565 (667)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~ 565 (667)
..|+..|++++|++..+... +......=...+.+..+.+-|.+.+++|.+ . .+-.+.+.|..+ ...
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--i--ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ--I--DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--c--chHHHHHHHHHHHHHHhcc
Confidence 34566666666666665521 111222222334455566666666666655 1 122333333333 333
Q ss_pred cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHH-HH
Q 005966 566 AGRLDEAYDLIRTM--PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAEN-VR 642 (667)
Q Consensus 566 ~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~ 642 (667)
.+.+.+|.-+|+++ +..|++.+.+..+.++...|++++|+.+++.++..++.+|.++..++.+-...|+..++.+ .+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 45566777777776 2566666666666667777777777777777777777777777766666666666554443 34
Q ss_pred HHhh
Q 005966 643 DVMD 646 (667)
Q Consensus 643 ~~~~ 646 (667)
.+++
T Consensus 266 ~QLk 269 (299)
T KOG3081|consen 266 SQLK 269 (299)
T ss_pred HHHH
Confidence 4443
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.56 E-value=0.00056 Score=73.23 Aligned_cols=234 Identities=12% Similarity=0.093 Sum_probs=168.5
Q ss_pred CCChhHHHHHHHHhhccCChhhHhHHHHHHHHhCCCc-h-hhhh-hHhhhcCChhhHHHhhcccCCCCcchHHHHHHHHH
Q 005966 10 PKTTHLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF-T-HLRS-SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYA 86 (667)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 86 (667)
|....++..|+..+...++++++.++.+..++..|.. . ++.. .+|...++.+++..+ .++....
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~ 94 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFS 94 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcc
Confidence 6678889999999999999999999999999999888 3 3333 667776775554443 4555556
Q ss_pred hCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHH
Q 005966 87 QNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR 166 (667)
Q Consensus 87 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 166 (667)
...++.-...+...|... .-+..++..+..+|-+.|+.+++..+|+++++.. +-|+.+.|.+...|+.. ++++|+
T Consensus 95 ~~~~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 95 QNLKWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccchhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 666664444444555443 4455688889999999999999999999999998 77899999999999999 999999
Q ss_pred HHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhc-CCCc
Q 005966 167 KVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG-RLGK 245 (667)
Q Consensus 167 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~ 245 (667)
+++... +..+...+++.++.+++.++... .|+.. +.-.++.+.+..+ |...
T Consensus 170 ~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~---------------d~f~~i~~ki~~~~~~~~ 221 (906)
T PRK14720 170 TYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDF---------------DFFLRIERKVLGHREFTR 221 (906)
T ss_pred HHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--Ccccc---------------hHHHHHHHHHHhhhccch
Confidence 887653 34477788999999999999874 33322 2222223333322 2233
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHH
Q 005966 246 NIAAWNALVDMYVKCGSVNEARLVFDRMSE---RDVVTWTSMINGYA 289 (667)
Q Consensus 246 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 289 (667)
-+.++-.+-..|-...+++++..+|+.+.+ .|..+..-++..|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 455666677778888888999999888876 34555566666665
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.56 E-value=9.6e-07 Score=73.75 Aligned_cols=94 Identities=22% Similarity=0.275 Sum_probs=52.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcC
Q 005966 556 YTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633 (667)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 633 (667)
...++..+...|++++|.+.++.. ...| +...+..+...+...|+++.|...++++++..|+++..+..++.+|...|
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 334445555555555555555554 2223 44455555555555566666666666666666665666666666666666
Q ss_pred CchHHHHHHHHhhhCC
Q 005966 634 RWKDAENVRDVMDEKG 649 (667)
Q Consensus 634 ~~~~A~~~~~~~~~~~ 649 (667)
++++|.+.+++..+..
T Consensus 100 ~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 100 EPESALKALDLAIEIC 115 (135)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 6666666665555543
No 126
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=1.5e-07 Score=55.52 Aligned_cols=33 Identities=36% Similarity=0.614 Sum_probs=25.7
Q ss_pred CCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 005966 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDRMS 274 (667)
Q Consensus 242 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 274 (667)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567778888888888888888888888887764
No 127
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.53 E-value=0.0013 Score=64.30 Aligned_cols=150 Identities=17% Similarity=0.084 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHhcCCHHHHHHHHh
Q 005966 395 ARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLS-VVEVSTGLIDIYSKCGSLESAHKIFS 473 (667)
Q Consensus 395 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 473 (667)
.+...+.++++...-..--..+|...+..-.+...+..|+.+|.+..+.+..+ .+.+.++++..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 34444455544433222222345555666666666667777777776665554 5666666666555 456666667766
Q ss_pred hCCCCCCCcc-hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005966 474 EIPIKDKDIV-VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE--VTFTSALHACSHGGLLDEGLDLFNFMLE 545 (667)
Q Consensus 474 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 545 (667)
--....+|.. --...+.-+...++-..+..+|++.+..++.|+. ..|..++.-=..-|+...+.++-+++..
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5444444433 3345556666666666677777777666555444 4566666666666777666666666554
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.52 E-value=1.9e-05 Score=84.05 Aligned_cols=150 Identities=11% Similarity=0.094 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 005966 451 VSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529 (667)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 529 (667)
.+..+..+|-+.|+.++|..+|+++....| |+.+.|-+...|... +.++|.+++.+.+.. +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 444555555555555555555555555442 344555555555555 555555555555442 333
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005966 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAK 609 (667)
Q Consensus 530 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 609 (667)
.+++..+.++|.++.. ..+.+...+..+....... ....--..++.-+-..|...+++++++.+++
T Consensus 182 ~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------REFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------hccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3455555555555554 1212222222211111111 0111123345555566777888999999999
Q ss_pred HhhccCCCCCchHHHHHHHHh
Q 005966 610 WLFELEPENPGNYVLLSKLYS 630 (667)
Q Consensus 610 ~~~~~~p~~~~~~~~l~~~~~ 630 (667)
.+++.+|.|..+...++.+|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 999999999999999998887
No 129
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=1.4e-07 Score=55.66 Aligned_cols=33 Identities=36% Similarity=0.460 Sum_probs=24.8
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHhcccC
Q 005966 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMW 173 (667)
Q Consensus 141 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 173 (667)
|+.||..+||.||.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
No 130
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.49 E-value=1.1e-05 Score=74.87 Aligned_cols=59 Identities=22% Similarity=0.181 Sum_probs=38.5
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 005966 558 CIVDLLGRAGRLDEAYDLIRTM-PLK---P-THAVWGALLGACVIHGNVELGEVAAKWLFELEP 616 (667)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~-~~~---p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 616 (667)
.+...+.+.|++++|+..+++. ... | ....+..++.++.+.|++++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4556677777777777777665 222 2 235666777777777777777777776665555
No 131
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.49 E-value=0.00046 Score=78.38 Aligned_cols=322 Identities=12% Similarity=-0.029 Sum_probs=184.9
Q ss_pred cCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CC---h-----hHHHHHHHHHHhC
Q 005966 224 YLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE----RD---V-----VTWTSMINGYALN 291 (667)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~---~-----~~~~~li~~~~~~ 291 (667)
..|+.+.+..+++.+.......+..........+...|++++|...++...+ .+ . .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 4455555555554432111111222233344455566777777777665422 10 1 1111222344567
Q ss_pred CChHHHHHHHHHHHhcCCCCCh----hhHHHHHHHhhcccchHHHHHHHHHHHHhcCC-----CCchHHhHHHHHHHhcC
Q 005966 292 GDVRNALGLFQLMQFEGVRPNS----LTIGSLLSACSSLYYLKRGRSLHAWTIKQNLE-----CEVIVETALIDMYAKCN 362 (667)
Q Consensus 292 ~~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g 362 (667)
|++++|...+++..+.-...+. .....+...+...|+++.+...+.......-. ........+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 7888888777776552111111 22333444456677787777777666543111 11223445566777788
Q ss_pred CHHHHHHHHhccCC-------CCc----ccHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHhCc
Q 005966 363 LVKLSFQVFARTSK-------KKT----VPWNAILAGCVHNGLARKAVELFRQMLVEV--VEPN--DATLNSLLPAYAIL 427 (667)
Q Consensus 363 ~~~~a~~~~~~~~~-------~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~p~--~~~~~~ll~~~~~~ 427 (667)
+++.|...+++... .+. ..+..+...+...|++++|...+.+..... ..+. ...+..+.......
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 88888877665431 111 113344556667799999988888765431 1122 23344455567788
Q ss_pred CCHHHHHHHHHHHHHhCCCCC-chHH-----HHHHHHHHhcCCHHHHHHHHhhCCCCCCC-c----chHHHHHHHHHHcC
Q 005966 428 ADLQQAMNIHCYLIRYGFLSV-VEVS-----TGLIDIYSKCGSLESAHKIFSEIPIKDKD-I----VVWSVIIAGYGMHG 496 (667)
Q Consensus 428 ~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~ 496 (667)
|+.+.|...++.......... ...+ ...+..+...|+.+.|...+.......+. . ..+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 999999988887754211111 1101 11224455688999999998776553211 1 11345667788899
Q ss_pred ChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005966 497 HGETAVSLFKEMVQS----GVQPNE-VTFTSALHACSHGGLLDEGLDLFNFMLE 545 (667)
Q Consensus 497 ~~~~a~~~~~~m~~~----~~~p~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 545 (667)
++++|...+++.... |..++. .+...+..++.+.|+.++|...+.++.+
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999987753 322222 3566667778899999999999999887
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=3.1e-05 Score=67.64 Aligned_cols=188 Identities=13% Similarity=0.054 Sum_probs=120.0
Q ss_pred CCChHHHHHHHHHHHHC---C-CCCCHHH-HHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHH
Q 005966 392 NGLARKAVELFRQMLVE---V-VEPNDAT-LNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLE 466 (667)
Q Consensus 392 ~~~~~~A~~~~~~m~~~---g-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 466 (667)
..++++.++++.++... | ..++..+ |..++-+....|+.+-|...++.+...- +.+..+-..-.-.+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 45677777777776542 4 4555543 4455556666777777777777776554 445544444444556677788
Q ss_pred HHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005966 467 SAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545 (667)
Q Consensus 467 ~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 545 (667)
+|.++++.+.+.+| |.+++-.-+......|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 88888887777664 4556666666666677777777777777665 455777788888888888888888888777765
Q ss_pred hcCCCCchhHHHHHHHHHhhcC---ChHHHHHHHHhC-CCCC
Q 005966 546 NHQTCSRADHYTCIVDLLGRAG---RLDEAYDLIRTM-PLKP 583 (667)
Q Consensus 546 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p 583 (667)
-.|-+.-.+..+.+.+--.| +++-|.++|.+. .+.|
T Consensus 183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 22233444555555544333 455566666665 4444
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.00015 Score=64.02 Aligned_cols=174 Identities=17% Similarity=0.061 Sum_probs=123.7
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 005966 438 CYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517 (667)
Q Consensus 438 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 517 (667)
+.+.......+......-...|.+.|++++|.+...... +....-.=+..+.+..+.+-|.+.+++|.+-. +.
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed 169 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAALNVQILLKMHRFDLAEKELKKMQQID---ED 169 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hH
Confidence 333333333333334444566888899999988887732 33333333455667778899999999998742 66
Q ss_pred HHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHH
Q 005966 518 VTFTSALHACSH----GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM--PLKPTHAVWGAL 591 (667)
Q Consensus 518 ~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 591 (667)
.|.+.|..++.+ .+.+.+|.-+|+++.+ ..+|+..+.+....++...|++++|..++++. +...++.++-.+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 677777777654 3578899999999977 57788888888888999999999999999887 344477777777
Q ss_pred HHHHHhcCC-HHHHHHHHHHhhccCCCCCc
Q 005966 592 LGACVIHGN-VELGEVAAKWLFELEPENPG 620 (667)
Q Consensus 592 ~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~ 620 (667)
+-.....|. .+--.+.+.++....|.++.
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 666666664 56667788888888888543
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.43 E-value=4.4e-06 Score=81.14 Aligned_cols=122 Identities=16% Similarity=0.131 Sum_probs=95.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005966 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVI 597 (667)
Q Consensus 520 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 597 (667)
...|+..+...++++.|..+++++.+.. |+. ...++..+...++-.+|++++.+. ...| +...+..-...+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD---PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC---CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 4455666667778888888888887621 443 445777777777888888887776 3344 66667777777889
Q ss_pred cCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 598 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
.++++.|..+.+++.+..|++-..|..|+.+|.+.|++++|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988875
No 135
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=9.2e-06 Score=72.98 Aligned_cols=109 Identities=19% Similarity=0.166 Sum_probs=91.7
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 005966 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPT-HAVWGALLGACVIHGNVEL 603 (667)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 603 (667)
-..+.++|++|+..|..+++ -.+-|+..|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 45678999999999999998 56667888889999999999999999988876 67775 4589999999999999999
Q ss_pred HHHHHHHhhccCCCCCchHHHHHHHHhhcCCch
Q 005966 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWK 636 (667)
Q Consensus 604 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 636 (667)
|++.|+++++++|++......|-.+-.+.+...
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999877777766655555444
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.43 E-value=4.4e-05 Score=80.59 Aligned_cols=132 Identities=8% Similarity=0.087 Sum_probs=71.0
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHH
Q 005966 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV-TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560 (667)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 560 (667)
...+-.|.....+.|.+++|..+++...+. .|+.. ....+...+.+.+++++|...+++... ..+.+......+.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a 161 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEA 161 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 445555555555555566666666555553 34432 344455555555666666666555554 3333344455555
Q ss_pred HHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 561 DLLGRAGRLDEAYDLIRTMP-LKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
.++.+.|++++|..+|+++- ..| +..++..+..++...|+.++|...|+++++...+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 55556666666666665552 333 2445555555555566666666666666554433
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.37 E-value=1.1e-05 Score=67.36 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=89.6
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CC
Q 005966 504 LFKEMVQSGVQPN-EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PL 581 (667)
Q Consensus 504 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 581 (667)
.+++..+. .|+ ......+...+...|++++|.+.++.+.. ..+.+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555554 343 34466677778888999999999998877 33456777888899999999999999988887 34
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchH
Q 005966 582 KP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNY 622 (667)
Q Consensus 582 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 622 (667)
.| +...+..+...+...|+++.|...++++++..|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 44 567788888889999999999999999999999876543
No 138
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.36 E-value=7.8e-05 Score=80.28 Aligned_cols=208 Identities=12% Similarity=0.162 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHh-CCCC---CchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHH
Q 005966 415 ATLNSLLPAYAILADLQQAMNIHCYLIRY-GFLS---VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIA 490 (667)
Q Consensus 415 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 490 (667)
..|-..+.-....++.++|+++.++.... ++.- -...|.++++....-|.-+...++|+++.+-......|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34455555556666666666666665432 1111 1234555555555556666666677666654223455666777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChH
Q 005966 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD 570 (667)
Q Consensus 491 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 570 (667)
.|.+.+..++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.++++.....-......-.+..-.+.|+.+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence 777777777777777777764 2334456666777777777777777777777662211113334444555556677777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC--CCCCchHH
Q 005966 571 EAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELE--PENPGNYV 623 (667)
Q Consensus 571 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~ 623 (667)
.+..+|+.. ...| ....|+..+..-.++|+.+.++.+|++++.+. |.....++
T Consensus 1618 RGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred hhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 777777665 2233 45567777777777777777777777776544 44444433
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.35 E-value=9e-05 Score=71.32 Aligned_cols=139 Identities=15% Similarity=0.121 Sum_probs=94.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCc-hhHHHHHHHHHhhc
Q 005966 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVT-FTSALHACSHGGLLDEGLDLFNFMLENHQTCSR-ADHYTCIVDLLGRA 566 (667)
Q Consensus 489 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 566 (667)
...+...|+.++|+..++.++.. .|+... +......+.+.++.++|.+.++++.. .. |+ ....-.+..+|.+.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~-P~~~~l~~~~a~all~~ 387 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LD-PNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cC-CCccHHHHHHHHHHHhc
Confidence 33445667777888888887765 444444 44445567778888888888888776 22 33 44555677788888
Q ss_pred CChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHH
Q 005966 567 GRLDEAYDLIRTM--PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644 (667)
Q Consensus 567 g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 644 (667)
|++.+|+.+++.. ..+.|+..|..|..+|...|+..++... .++.|+-.|+|++|+..+.+
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHH
Confidence 8888888887776 2444677788888888888877665544 45566677777777777777
Q ss_pred hhhCC
Q 005966 645 MDEKG 649 (667)
Q Consensus 645 ~~~~~ 649 (667)
..++.
T Consensus 451 A~~~~ 455 (484)
T COG4783 451 ASQQV 455 (484)
T ss_pred HHHhc
Confidence 76654
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.27 E-value=3e-05 Score=65.29 Aligned_cols=115 Identities=13% Similarity=0.040 Sum_probs=63.4
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCc-hhHHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH----HHHHHHHHHHhcCCHHH
Q 005966 530 GGLLDEGLDLFNFMLENHQTCSR-ADHYTCIVDLLGRAGRLDEAYDLIRTMP-LKPTHA----VWGALLGACVIHGNVEL 603 (667)
Q Consensus 530 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~----~~~~l~~~~~~~g~~~~ 603 (667)
.++...+...++.+.+.++-.+- ....-.+...+...|++++|...|++.. ..||+. ....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55666666666666553322111 1222234455666666666666666652 223321 33445555666777777
Q ss_pred HHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHh
Q 005966 604 GEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645 (667)
Q Consensus 604 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 645 (667)
|+..++.. ...+-.+.++..+|.+|.+.|++++|+..|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77776553 222233556666777777777777777777653
No 141
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.25 E-value=0.0059 Score=59.82 Aligned_cols=212 Identities=12% Similarity=0.092 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcC---CHHHHHHHHhhCCCCC--CCcchHHHHHHHHHHcCChHHHHHH
Q 005966 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCG---SLESAHKIFSEIPIKD--KDIVVWSVIIAGYGMHGHGETAVSL 504 (667)
Q Consensus 430 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~ 504 (667)
.+++..+++..+..-...+..+|..+.+.--..- +.+...+.++++.... .-..+|-.++..-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455555555544333334444544443222221 2555666666655543 1235677888888888889999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCC---
Q 005966 505 FKEMVQSGVQP-NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP--- 580 (667)
Q Consensus 505 ~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 580 (667)
|.+..+.+..+ .....+.++.-++ .++.+-|.++|+.-++.++. +...-...++.+...++-..|..+|++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999988777 5566777777555 57889999999988874543 44445668888999999999999999982
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC----CchHHHHHHHHhhcCCchHHHHHHHH
Q 005966 581 LKPT--HAVWGALLGACVIHGNVELGEVAAKWLFELEPEN----PGNYVLLSKLYSAVRRWKDAENVRDV 644 (667)
Q Consensus 581 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 644 (667)
+.|| ..+|..++..-..-||...+.++-++....-|.+ ...-..+.+-|.=.+.+..-..-++.
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~ 535 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKF 535 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHh
Confidence 3444 3589999999999999999999998877766622 12334455566666665544444433
No 142
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.25 E-value=1.8e-06 Score=61.93 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcC-CchHHHHHHHHhhhCC
Q 005966 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR-RWKDAENVRDVMDEKG 649 (667)
Q Consensus 584 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 649 (667)
+..+|..++..+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 46688899999999999999999999999999999999999999999999 7999999999987643
No 143
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.4e-05 Score=72.38 Aligned_cols=112 Identities=17% Similarity=0.117 Sum_probs=93.6
Q ss_pred CCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHhhccCCCCCchH
Q 005966 548 QTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIH---GNVELGEVAAKWLFELEPENPGNY 622 (667)
Q Consensus 548 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~ 622 (667)
..|-|...|-.|...|.+.|++..|...|.+. ++.| ++..+..+..++..+ .+..++..++++++..+|.|+.+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34567888999999999999999999999887 4444 666777777765433 357899999999999999999999
Q ss_pred HHHHHHHhhcCCchHHHHHHHHhhhCCCccCCCeeEE
Q 005966 623 VLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLI 659 (667)
Q Consensus 623 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 659 (667)
..|+..++..|++.+|...++.|.+.....+|.-+.|
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 9999999999999999999999999988777765544
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.20 E-value=1.3e-06 Score=65.55 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=52.5
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHH
Q 005966 566 AGRLDEAYDLIRTM-PLKP---THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENV 641 (667)
Q Consensus 566 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 641 (667)
.|++++|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45666777666666 2222 344555567777777777777777777 666666667777778888888888888887
Q ss_pred HHH
Q 005966 642 RDV 644 (667)
Q Consensus 642 ~~~ 644 (667)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 145
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.19 E-value=3.1e-06 Score=59.78 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=53.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 591 LLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 591 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
+...+...|++++|+..++++++..|+++.++..++.++...|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678899999999999999999999999999999999999999999999999987654
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.19 E-value=1.7e-05 Score=64.40 Aligned_cols=94 Identities=15% Similarity=0.077 Sum_probs=53.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC---CchHHHHHH
Q 005966 556 YTCIVDLLGRAGRLDEAYDLIRTM-PLKPT----HAVWGALLGACVIHGNVELGEVAAKWLFELEPEN---PGNYVLLSK 627 (667)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 627 (667)
+..++..+.+.|++++|.+.++++ ...|+ ...+..+..++.+.|+++.|...+++++...|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455555566666666655555 22222 2344455556666666666666666666665553 345566666
Q ss_pred HHhhcCCchHHHHHHHHhhhCC
Q 005966 628 LYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 628 ~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
++.+.|++++|...++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 6666666666666666665554
No 147
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.19 E-value=0.013 Score=61.16 Aligned_cols=221 Identities=13% Similarity=0.093 Sum_probs=112.2
Q ss_pred CChhhHHHhhcccCCC-CcchHHHHHHH--HHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHH
Q 005966 58 GHVSNVRILFDEMSER-SSFLYNTVMKM--YAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALH 134 (667)
Q Consensus 58 g~~~~A~~~~~~~~~~-~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 134 (667)
+++.+|....+++..+ ....|..++.+ +.+.|+.++|..+++.....+ ..|..|...+-.+|...+..++|..+|
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 5556666666554332 22233344443 345666777776666665441 225556666666666667777777777
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCHH----HHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 005966 135 GRVLITGFDMDTFVGNCLIAMYMNFGEVK----AARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210 (667)
Q Consensus 135 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 210 (667)
++..... |+......+..+|.|.+.+. .|++++...++.--.-|+.+--.+......+.+.. .
T Consensus 101 e~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~---~-------- 167 (932)
T KOG2053|consen 101 ERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLD---P-------- 167 (932)
T ss_pred HHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCccccc---c--------
Confidence 6666553 44555555666666665544 34444444444333333322221111111111111 0
Q ss_pred ChHHHHHHHHHcccCcchHHHHHHHHHHHhcC-CCcchhHHHHHHHHHHhcCCHHHHHHHHhh-c----CCCChhHHHHH
Q 005966 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGR-LGKNIAAWNALVDMYVKCGSVNEARLVFDR-M----SERDVVTWTSM 284 (667)
Q Consensus 211 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~----~~~~~~~~~~l 284 (667)
--+..|...++.+.+.+ .-.+..-...-...+...|++++|++++.. . ...+...-+.-
T Consensus 168 ---------------i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~ 232 (932)
T KOG2053|consen 168 ---------------ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKK 232 (932)
T ss_pred ---------------hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 00122344444444333 111111122222334566788888888732 2 22344444556
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcC
Q 005966 285 INGYALNGDVRNALGLFQLMQFEG 308 (667)
Q Consensus 285 i~~~~~~~~~~~a~~~~~~m~~~~ 308 (667)
+..+...+++.+..++-.++...|
T Consensus 233 ~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 233 LDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHhcChHHHHHHHHHHHHhC
Confidence 677777888888888888887765
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.18 E-value=1.6e-05 Score=61.56 Aligned_cols=94 Identities=21% Similarity=0.252 Sum_probs=77.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcC
Q 005966 556 YTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633 (667)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 633 (667)
+..++..+...|++++|...+++. ...| +...+..+...+...|+++.|...++++....|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677777888888888888876 3444 44667778888888899999999999999999998888999999999999
Q ss_pred CchHHHHHHHHhhhCC
Q 005966 634 RWKDAENVRDVMDEKG 649 (667)
Q Consensus 634 ~~~~A~~~~~~~~~~~ 649 (667)
++++|...+++..+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998876543
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.14 E-value=0.00017 Score=60.77 Aligned_cols=126 Identities=13% Similarity=0.104 Sum_probs=83.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCch--hHHHHHH
Q 005966 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN--EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA--DHYTCIV 560 (667)
Q Consensus 485 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~ 560 (667)
|..++..+ ..++...+...++.+.+....-. ......+...+...|++++|...|+.+.... ..|.. .....+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHH
Confidence 33344444 47778888888888887632211 1234445566778888888888888888732 22221 2334467
Q ss_pred HHHhhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005966 561 DLLGRAGRLDEAYDLIRTMPLK-PTHAVWGALLGACVIHGNVELGEVAAKWLF 612 (667)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 612 (667)
.++...|++++|+..++..... ..+..+...+..+...|++++|+..|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 7788888888888888776422 244566677777888899999988888764
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.13 E-value=0.0001 Score=71.74 Aligned_cols=127 Identities=12% Similarity=0.164 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 005966 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529 (667)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 529 (667)
.....|+..+...++++.|.++|+++.+..|+ ....++..+...++..+|++++++.++.. +-+...+..-...|.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 34445666777788889999999998885554 45567788888888889999999988753 3355566666677888
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCC
Q 005966 530 GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPL 581 (667)
Q Consensus 530 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (667)
.++++.|+.+.+++.+ -.|.+..+|..|+.+|...|++++|+-.++.++.
T Consensus 247 k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999987 4445567899999999999999999999998863
No 151
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.10 E-value=5.8e-06 Score=49.76 Aligned_cols=34 Identities=50% Similarity=0.789 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005966 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211 (667)
Q Consensus 178 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 211 (667)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
No 152
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.07 E-value=0.012 Score=56.50 Aligned_cols=242 Identities=16% Similarity=0.173 Sum_probs=138.4
Q ss_pred HHHHHHHHHCCCCCCHH-HHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCC----CchHHHHHHHHHHhcCCHHHHHHHHh
Q 005966 399 VELFRQMLVEVVEPNDA-TLNSLLPAYAILADLQQAMNIHCYLIRYGFLS----VVEVSTGLIDIYSKCGSLESAHKIFS 473 (667)
Q Consensus 399 ~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 473 (667)
+++++.....-+.|+.. ....+...+.. +.+++..+.+.+....+.+ -..++..++....+.++...|...+.
T Consensus 245 mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 245 MQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444444444566543 23334444433 5555555555444332221 23456667777778888888887777
Q ss_pred hCCCCCCCcchH-------HHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHhccCC-HHHHHH
Q 005966 474 EIPIKDKDIVVW-------SVIIAGYGM----HGHGETAVSLFKEMVQSGVQPNEVTFTSAL---HACSHGGL-LDEGLD 538 (667)
Q Consensus 474 ~~~~~~~~~~~~-------~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~g~-~~~A~~ 538 (667)
-+....|+...- ..+-+..+. .-+...=+.+|+.....++.--. ....|+ .-+-+.|. -++|+.
T Consensus 323 lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekaln 401 (549)
T PF07079_consen 323 LLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALN 401 (549)
T ss_pred HHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHH
Confidence 665544543311 122222221 11233445566666665432211 122222 22445555 788999
Q ss_pred HHHHhHHhcCCCCchhHHHHHHH----HHhh---cCChHHH---HHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHH
Q 005966 539 LFNFMLENHQTCSRADHYTCIVD----LLGR---AGRLDEA---YDLIRTMPLKP----THAVWGALLGA--CVIHGNVE 602 (667)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~~A---~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~ 602 (667)
+++.+++ -.+-|...-|.+.. .|.. ...+.+- ...+++.++.| +...-+.|..| ...+|++.
T Consensus 402 LLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~ 479 (549)
T PF07079_consen 402 LLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYH 479 (549)
T ss_pred HHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHH
Confidence 9998887 22234443332211 1211 1222222 23344555544 34466777777 56799999
Q ss_pred HHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 603 LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 603 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
++.-.-.-+.+..| .|.+|..+|-++....+|+||..++..+.
T Consensus 480 kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 480 KCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99999999999999 49999999999999999999999998764
No 153
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.07 E-value=0.00033 Score=58.20 Aligned_cols=134 Identities=11% Similarity=0.084 Sum_probs=107.2
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC---CHHHH
Q 005966 513 VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP---THAVW 588 (667)
Q Consensus 513 ~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 588 (667)
..|...--..|..+....|++.+|...|++... ..+.-|......+..+....+++..|...++++ ...| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 356666667788888899999999999999887 566677777888888888999999999888886 2222 23345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 589 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
..+.+.+...|..+.|+..|+.++.-.|+ +......+..+.++|+..+|...+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 56777888999999999999999999998 888888899999999988888776665543
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.06 E-value=2.7e-05 Score=76.35 Aligned_cols=108 Identities=14% Similarity=0.099 Sum_probs=92.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 005966 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGN 600 (667)
Q Consensus 523 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 600 (667)
-...+...|++++|+..|+++++ ..+.+...|..+..+|.+.|++++|+..++++ ...| +...+..++.+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34567788999999999999998 44456778888999999999999999999988 5556 66688889999999999
Q ss_pred HHHHHHHHHHhhccCCCCCchHHHHHHHHhhc
Q 005966 601 VELGEVAAKWLFELEPENPGNYVLLSKLYSAV 632 (667)
Q Consensus 601 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 632 (667)
+++|+..++++++++|+++.+...+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998888777665544
No 155
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=8.6e-06 Score=48.56 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 005966 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEP 210 (667)
Q Consensus 178 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 210 (667)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 588999999999999999999999999988887
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.04 E-value=8.2e-05 Score=60.40 Aligned_cols=105 Identities=10% Similarity=0.090 Sum_probs=71.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-chhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 005966 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCS-RADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPT----HAVWGALL 592 (667)
Q Consensus 519 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 592 (667)
++..+...+.+.|++++|...+..+.+.....+ ....+..++.++.+.|++++|...++++ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445556666777777777777777766332111 1334556777788888888888887776 23333 44677777
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCCchHH
Q 005966 593 GACVIHGNVELGEVAAKWLFELEPENPGNYV 623 (667)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 623 (667)
.++.+.|+.+.|...++++++..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7788888888888888888888888665443
No 157
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.02 E-value=0.013 Score=55.02 Aligned_cols=280 Identities=18% Similarity=0.167 Sum_probs=181.9
Q ss_pred cCCHHHHHHHHhccC---CCCcccHHHHHHH--HHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhCcCCHHHH
Q 005966 361 CNLVKLSFQVFARTS---KKKTVPWNAILAG--CVHNGLARKAVELFRQMLVEVVEPND--ATLNSLLPAYAILADLQQA 433 (667)
Q Consensus 361 ~g~~~~a~~~~~~~~---~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a 433 (667)
.|+-..|.++-.+.. ..|..+.-.++.+ -.-.|+++.|.+-|+.|... |.. .-+..|.-.-.+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 355555555544332 3343343334433 23468999999999988742 222 2233344444577888888
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---CCcc--hHHHHHHHH---HHcCChHHHHHHH
Q 005966 434 MNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD---KDIV--VWSVIIAGY---GMHGHGETAVSLF 505 (667)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~--~~~~l~~~~---~~~~~~~~a~~~~ 505 (667)
+++-+..-..- +.-.-.....+...+..|+++.|+++.+.-.... ++.. .--.|+.+- .-.-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877765543 3345667778888999999999999988654432 3332 122222221 1123456666666
Q ss_pred HHHHHcCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC----C
Q 005966 506 KEMVQSGVQPNEVT-FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM----P 580 (667)
Q Consensus 506 ~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 580 (667)
.+..+ +.||... -..-..++.+.|+..++-.+++.+-+ ..|.+.++.. ..+.+.|+ .++.-+++. .
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~l--Y~~ar~gd--ta~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALL--YVRARSGD--TALDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHH--HHHhcCCC--cHHHHHHHHHHHHh
Confidence 66555 5677643 44456778999999999999999977 2355544432 23345554 344333333 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhc-CCchHHHHHHHHhhhCCCccCCCe
Q 005966 581 LKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAV-RRWKDAENVRDVMDEKGLRKAPAH 656 (667)
Q Consensus 581 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~ 656 (667)
.+| +......+..+....|++..|..-.+.+....|. .++|..|+++-... |+-.++...+-+..+.. .+|.+
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~AP--rdPaW 398 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAP--RDPAW 398 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCC--CCCcc
Confidence 555 5557778888889999999999999999999998 78899999997766 99999999998877653 44544
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.01 E-value=5.5e-05 Score=65.91 Aligned_cols=94 Identities=13% Similarity=0.061 Sum_probs=55.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHh
Q 005966 556 YTCIVDLLGRAGRLDEAYDLIRTM-PLKPT----HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630 (667)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 630 (667)
+..++..+...|++++|...+++. ...|+ ...+..+...+.+.|+++.|+..++++++..|+++..+..++.+|.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 444444555555555555555544 11111 2355566666666777777777777777777776666666777776
Q ss_pred hcCC--------------chHHHHHHHHhhhCC
Q 005966 631 AVRR--------------WKDAENVRDVMDEKG 649 (667)
Q Consensus 631 ~~g~--------------~~~A~~~~~~~~~~~ 649 (667)
..|+ +++|.+.+++..+.+
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 6665 456666666655544
No 159
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.01 E-value=1.3e-05 Score=48.16 Aligned_cols=35 Identities=37% Similarity=0.703 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 005966 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517 (667)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 517 (667)
.+||+++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888999999999999999999999988888873
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.99 E-value=9e-05 Score=72.67 Aligned_cols=103 Identities=16% Similarity=0.075 Sum_probs=83.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcC
Q 005966 488 IIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567 (667)
Q Consensus 488 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 567 (667)
....+...|++++|+..|++.++.. +-+...|..+..+|...|++++|+..++++++ ..+.+...|..++.+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 3556778899999999999999864 33566788888899999999999999999988 34456777888999999999
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 005966 568 RLDEAYDLIRTM-PLKPTHAVWGALLG 593 (667)
Q Consensus 568 ~~~~A~~~~~~~-~~~p~~~~~~~l~~ 593 (667)
++++|+..|++. ...|+.......+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999987 56675554444433
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=2.1e-05 Score=70.76 Aligned_cols=90 Identities=18% Similarity=0.157 Sum_probs=81.4
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchH
Q 005966 560 VDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKD 637 (667)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 637 (667)
.+-+.+.++|++|+..|.++ .+.| |.+.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34567899999999999987 6776 777788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCC
Q 005966 638 AENVRDVMDEKG 649 (667)
Q Consensus 638 A~~~~~~~~~~~ 649 (667)
|++.|++.++..
T Consensus 168 A~~aykKaLeld 179 (304)
T KOG0553|consen 168 AIEAYKKALELD 179 (304)
T ss_pred HHHHHHhhhccC
Confidence 999999877654
No 162
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.6e-05 Score=47.42 Aligned_cols=33 Identities=36% Similarity=0.600 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCC
Q 005966 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGVRP 311 (667)
Q Consensus 279 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 311 (667)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 163
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.95 E-value=7.5e-05 Score=64.84 Aligned_cols=93 Identities=14% Similarity=-0.085 Sum_probs=72.6
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHH
Q 005966 552 RADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPT----HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626 (667)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 626 (667)
....|..++..+...|++++|+..+++. ...|+ ..++..+...+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3455667777777888888888888876 23232 347888888899999999999999999999999888888888
Q ss_pred HHHh-------hcCCchHHHHHHHH
Q 005966 627 KLYS-------AVRRWKDAENVRDV 644 (667)
Q Consensus 627 ~~~~-------~~g~~~~A~~~~~~ 644 (667)
.+|. +.|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 8888 88888755555544
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.94 E-value=9.6e-06 Score=57.94 Aligned_cols=54 Identities=17% Similarity=0.316 Sum_probs=45.0
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 596 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
...|++++|+..++++++..|+++.++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467888888888888888888888888888888888888888888888877654
No 165
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.92 E-value=2.8e-05 Score=56.42 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=52.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 592 LGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 592 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
...+.+.++++.|..+++++++++|+++..+...+.+|...|++++|.+.+++..+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34678889999999999999999999999999999999999999999999999887664
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.85 E-value=5.3e-05 Score=56.70 Aligned_cols=80 Identities=19% Similarity=0.318 Sum_probs=35.8
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHH
Q 005966 495 HGHGETAVSLFKEMVQSGVQ-PNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAY 573 (667)
Q Consensus 495 ~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 573 (667)
.|+++.|+.+++++.+.... |+...+..+..+|.+.|++++|..+++. .+..+ .+......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--CCHHHHHHHHHHHHHhCCHHHHH
Confidence 34555555555555554321 1223333355555555555555555555 21011 12222333455555555555555
Q ss_pred HHHH
Q 005966 574 DLIR 577 (667)
Q Consensus 574 ~~~~ 577 (667)
++++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.84 E-value=0.00055 Score=70.20 Aligned_cols=140 Identities=16% Similarity=0.113 Sum_probs=87.7
Q ss_pred CcchHHHHHHHHHH--c---CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcc--------CCHHHHHHHHHHhHHh
Q 005966 481 DIVVWSVIIAGYGM--H---GHGETAVSLFKEMVQSGVQPNE-VTFTSALHACSHG--------GLLDEGLDLFNFMLEN 546 (667)
Q Consensus 481 ~~~~~~~l~~~~~~--~---~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~--------g~~~~A~~~~~~~~~~ 546 (667)
+...|...+.+... . ++...|..+|++.++. .|+. ..+..+..++... +++..+.+...+....
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 44556655555332 2 2256777777777774 4554 2333333322211 1233444444443332
Q ss_pred cCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchH
Q 005966 547 HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNY 622 (667)
Q Consensus 547 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 622 (667)
...+.+...|..+.-.....|++++|...++++ ...|+...|..++..+...|+.++|...+++++.++|.+|..|
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 223345566777766667778888888888887 5667777888888888888888888888888888888877533
No 168
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.84 E-value=0.00021 Score=55.08 Aligned_cols=93 Identities=24% Similarity=0.218 Sum_probs=54.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 005966 522 SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHG 599 (667)
Q Consensus 522 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 599 (667)
.+...+...|++++|...++.+.+ ..+.+...+..+..++...|++++|.+.+++. ...| +...+..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 344445555666666666666554 12223344555666666666666666666654 2223 3345666666667777
Q ss_pred CHHHHHHHHHHhhccCC
Q 005966 600 NVELGEVAAKWLFELEP 616 (667)
Q Consensus 600 ~~~~A~~~~~~~~~~~p 616 (667)
+++.|...++++++..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 77777777777766665
No 169
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00042 Score=65.13 Aligned_cols=157 Identities=10% Similarity=0.051 Sum_probs=114.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhH-------------H
Q 005966 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADH-------------Y 556 (667)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------~ 556 (667)
.++.-.|++++|..+--..++.. ..+......-..++...++.+.|...|++.+. ..|+... +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHH
Confidence 45677888999988887777653 11222222222334556788889888888766 2243322 2
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHh
Q 005966 557 TCIVDLLGRAGRLDEAYDLIRTM-PLK-----PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630 (667)
Q Consensus 557 ~~l~~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 630 (667)
..-.+-..+.|++.+|.+.+.+. .+. |+...|.....+..+.|+.++|+.--+.+++++|.-..++..-+.++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 22334566889999999999887 444 445566666677788999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHhhhCCC
Q 005966 631 AVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 631 ~~g~~~~A~~~~~~~~~~~~ 650 (667)
..++|++|++.+++..+..-
T Consensus 333 ~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999876543
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.84 E-value=0.00045 Score=65.24 Aligned_cols=135 Identities=17% Similarity=0.164 Sum_probs=100.8
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHH
Q 005966 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA-CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561 (667)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 561 (667)
.+|-.++....+.+..+.|..+|.+.++.+ ......|...... +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 367888888888888999999999998543 3344455544444 34456777799999999984 4566777889999
Q ss_pred HHhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCc
Q 005966 562 LLGRAGRLDEAYDLIRTM-PLKPTH----AVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620 (667)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 620 (667)
.+.+.|+.+.|..+|++. ..-|.. ..|...+..-.+.|+.+....+.+++.+..|++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999987 333333 48999999999999999999999999988888443
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.82 E-value=0.0065 Score=60.67 Aligned_cols=86 Identities=16% Similarity=0.089 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHH--------
Q 005966 517 EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP-LKPTHAV-------- 587 (667)
Q Consensus 517 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~-------- 587 (667)
..+...+..-+.+...+.-|.++|.+|-. ..++++.....++|++|+.+.++.+ ..||...
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 34455555555566667777777777744 3456777778888888888888774 4444321
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHHhh
Q 005966 588 ---WGALLGACVIHGNVELGEVAAKWLF 612 (667)
Q Consensus 588 ---~~~l~~~~~~~g~~~~A~~~~~~~~ 612 (667)
+...-.++.+.|+..+|.++++++-
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 1222234555566666666666543
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.82 E-value=0.0005 Score=59.91 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=83.4
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHH
Q 005966 482 IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN--EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559 (667)
Q Consensus 482 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 559 (667)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.++.+. .+.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34566677777778888888888888776543332 245666777777788888888888777762 22344555666
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCC
Q 005966 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRR 634 (667)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 634 (667)
+.++...|+...+..-++.. ...+++|.++++++++.+|++ +..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 66666666655554332221 123677889999999999885 4445555544443
No 173
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.81 E-value=0.035 Score=53.08 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=51.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 005966 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535 (667)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 535 (667)
+.-+...|+...|.++-.+..- |+...|...+.+++..++|++-.++... +-++.-|...+.+|.+.|...+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv--~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKV--PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCC--cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 3344445555555555555544 5555555555555555555544443221 1123445555555555555555
Q ss_pred HHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHh
Q 005966 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578 (667)
Q Consensus 536 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 578 (667)
|..+..++ + +..-+..|.++|++.+|.+...+
T Consensus 256 A~~yI~k~-------~----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 256 ASKYIPKI-------P----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHhC-------C----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 55554441 1 12234455555555555554433
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.79 E-value=5.4e-05 Score=53.35 Aligned_cols=61 Identities=23% Similarity=0.322 Sum_probs=49.4
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC
Q 005966 559 IVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENP 619 (667)
Q Consensus 559 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 619 (667)
++..+...|++++|.+.|++. ...| +...+..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999887 5556 566788888889999999999999999999999874
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.79 E-value=0.0022 Score=58.95 Aligned_cols=176 Identities=7% Similarity=0.007 Sum_probs=104.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCCCcch----HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 005966 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVV----WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529 (667)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 529 (667)
.....+.+.|++++|.+.|+.+....|+... .-.++.++.+.+++++|...+++..+..+.-....+.....+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444556677777777777777766554422 134556677788888888888887775332222223332222221
Q ss_pred --cC---------------C---HHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHH
Q 005966 530 --GG---------------L---LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWG 589 (667)
Q Consensus 530 --~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 589 (667)
.+ + ..+|...|+.+++.+ |+. .-..+|...+..+...--. .-.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~la~-~e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDRLAK-YEL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHHHHH-HHH
Confidence 11 1 223445555555422 332 2233343333332100000 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCC---CchHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 590 ALLGACVIHGNVELGEVAAKWLFELEPEN---PGNYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 590 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
.+...|.+.|.+..|..-++.+++.-|+. +.++..++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 45566889999999999999999988874 4567788999999999999999887654
No 176
>PRK15331 chaperone protein SicA; Provisional
Probab=97.79 E-value=0.00019 Score=59.20 Aligned_cols=87 Identities=16% Similarity=0.122 Sum_probs=69.9
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHH
Q 005966 561 DLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDA 638 (667)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 638 (667)
.-+-..|++++|..+|+-+ ...| ++.-|..|..+|...+++++|+..|..+..++++||...+..+.+|...|+.++|
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3345788888888888876 2333 5666777777788888899999999988888888888888999999999999999
Q ss_pred HHHHHHhhh
Q 005966 639 ENVRDVMDE 647 (667)
Q Consensus 639 ~~~~~~~~~ 647 (667)
+..|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888888766
No 177
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.77 E-value=0.042 Score=52.95 Aligned_cols=125 Identities=15% Similarity=0.171 Sum_probs=69.0
Q ss_pred HHhcCC-HHHHHHHHhhCCCCCC-CcchHHHHHH----HHHH---cCChHHHHHHHHHHHHcCCCCCHH----HHHHHHH
Q 005966 459 YSKCGS-LESAHKIFSEIPIKDK-DIVVWSVIIA----GYGM---HGHGETAVSLFKEMVQSGVQPNEV----TFTSALH 525 (667)
Q Consensus 459 ~~~~g~-~~~A~~~~~~~~~~~~-~~~~~~~l~~----~~~~---~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~ 525 (667)
+.+.|. -++|..+++.+..-.+ |...-|.+.. +|.+ .....+-+.+-+-+.+.|+.|-.+ .-+.|.+
T Consensus 389 lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 444454 6677777777665432 3333332222 1211 122333344444445566665432 3344444
Q ss_pred H--HhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH
Q 005966 526 A--CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW 588 (667)
Q Consensus 526 ~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 588 (667)
+ +...|++.++.-.-..+.+ +.|++.+|..++-++....++++|.+++.+++ |+..++
T Consensus 469 AEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ 528 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMR 528 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhH
Confidence 4 3456777777665555544 45777777777777777778888888877764 344444
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.67 E-value=0.0014 Score=67.35 Aligned_cols=136 Identities=17% Similarity=0.098 Sum_probs=98.9
Q ss_pred CCCCCHHHHHHHHHHHhc--c---CCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhc--------CChHHHHHHHHh
Q 005966 512 GVQPNEVTFTSALHACSH--G---GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA--------GRLDEAYDLIRT 578 (667)
Q Consensus 512 ~~~p~~~~~~~ll~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~ 578 (667)
+.+.|...|...+++... . +..++|..+|+++.+ ..|-....|..+..++... +++..+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 346677888888887443 2 347799999999988 3323344555544444322 223445555555
Q ss_pred C---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 579 M---P-LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 579 ~---~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
. . ...++..+..+.-.....|++++|...++++++++|. ...|..++.+|...|+.++|.+.+++......
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3 1 3335567777777777889999999999999999995 78999999999999999999999999887653
No 179
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=5.5e-05 Score=43.82 Aligned_cols=31 Identities=52% Similarity=0.737 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 005966 178 VSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208 (667)
Q Consensus 178 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 208 (667)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888877664
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.67 E-value=0.0025 Score=55.27 Aligned_cols=63 Identities=13% Similarity=0.091 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005966 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPN--EVTFTSALHACSHGGLLDEGLDLFNFMLE 545 (667)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 545 (667)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++++.+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555566666666666666666665422221 23555566666666666666666666655
No 181
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.65 E-value=0.00058 Score=56.19 Aligned_cols=94 Identities=12% Similarity=-0.055 Sum_probs=71.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 005966 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVI 597 (667)
Q Consensus 520 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 597 (667)
...+..-+...|++++|.++|+.+.. -.+-+...|-.|.-++...|++++|+..|... ...| |+..+..+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 44445556778888888888888876 33345667778888888888888888888887 3444 66778888888888
Q ss_pred cCCHHHHHHHHHHhhccC
Q 005966 598 HGNVELGEVAAKWLFELE 615 (667)
Q Consensus 598 ~g~~~~A~~~~~~~~~~~ 615 (667)
.|+.+.|+..|+.++...
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 888888888888887765
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.65 E-value=6e-05 Score=53.77 Aligned_cols=62 Identities=24% Similarity=0.369 Sum_probs=34.8
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHH
Q 005966 565 RAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626 (667)
Q Consensus 565 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 626 (667)
..|++++|++.|+++ ...| +...+..++.+|.+.|++++|..+++++....|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 455566666666555 2233 4555555666666666666666666666666666555544444
No 183
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.65 E-value=2.4e-05 Score=46.05 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=31.4
Q ss_pred HHHHhhccCCCCCchHHHHHHHHhhcCCchHHHH
Q 005966 607 AAKWLFELEPENPGNYVLLSKLYSAVRRWKDAEN 640 (667)
Q Consensus 607 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 640 (667)
+++++++++|+|+.+|..|+.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999963
No 184
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.62 E-value=0.063 Score=50.72 Aligned_cols=260 Identities=15% Similarity=0.075 Sum_probs=171.0
Q ss_pred HHHHHHHHHh--CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 005966 382 WNAILAGCVH--NGLARKAVELFRQMLVEVVEPNDATLNSLLPAY--AILADLQQAMNIHCYLIRYGFLSVVEVSTGLID 457 (667)
Q Consensus 382 ~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 457 (667)
|..|-.++.. .|+-..|.++-.+-... +..|...+..++.+- .-.|+++.|.+-|+.|.... +.-.--...|.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHH
Confidence 5556566554 46767776665554322 445555666666554 45799999999999997532 111112233444
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCC-cchHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHh--c-c
Q 005966 458 IYSKCGSLESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHGHGETAVSLFKEMVQSG-VQPNEV--TFTSALHACS--H-G 530 (667)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~--~-~ 530 (667)
.-.+.|..+.|...-++....-|. .-.+.+.+...|..|+|+.|+++++.-++.. +.++.. .-..|+.+-. . .
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 445788889888888877665554 4578899999999999999999999877643 344442 2233333211 1 1
Q ss_pred CCHHHHHHHHHHhHHhcCCCCchhHH-HHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHH-HHH
Q 005966 531 GLLDEGLDLFNFMLENHQTCSRADHY-TCIVDLLGRAGRLDEAYDLIRTM-PLKPTHAVWGALLGACVIHGNVELG-EVA 607 (667)
Q Consensus 531 g~~~~A~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A-~~~ 607 (667)
.+...|...-.+.. .+.|+...- -.-...|.+.|+..++-.+++.+ +..|.+.++... ...+.|+.... .+-
T Consensus 243 adp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~gdta~dRlkR 317 (531)
T COG3898 243 ADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSGDTALDRLKR 317 (531)
T ss_pred CChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCCCcHHHHHHH
Confidence 23445555444443 355664322 23456789999999999999998 777887766443 34466775333 233
Q ss_pred HHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 608 AKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 608 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
.+++.++.|++......++..-...|++..|..--+...+.
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 45667799999999999999999999999888777665543
No 185
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.62 E-value=0.00034 Score=64.66 Aligned_cols=98 Identities=10% Similarity=0.084 Sum_probs=47.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCc-hhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC----CHHHHHHHHH
Q 005966 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSR-ADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP----THAVWGALLG 593 (667)
Q Consensus 520 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~ 593 (667)
|...+....+.|++++|...|+.+++.+...+- ...+..++..|...|++++|...|+++ ...| .+..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444443334456666666666666653321110 123444555555555555555555554 1112 1233444444
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCC
Q 005966 594 ACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 594 ~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
.+...|+.+.|..+++++++..|+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcC
Confidence 444555555555555555555555
No 186
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.60 E-value=8.2e-05 Score=43.07 Aligned_cols=31 Identities=39% Similarity=0.693 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 005966 279 VTWTSMINGYALNGDVRNALGLFQLMQFEGV 309 (667)
Q Consensus 279 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 309 (667)
++||.+|.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888877664
No 187
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.51 E-value=0.14 Score=52.10 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=78.0
Q ss_pred cchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHhCCChHHHHHH
Q 005966 226 KEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-----RDVVTWTSMINGYALNGDVRNALGL 300 (667)
Q Consensus 226 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~ 300 (667)
|++++|++++-.+-+++ .-+..+.+.|++-...++++.=.. .-..+|+.+...+.....|++|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554444332 224445555666665555554322 1123566666666666666666666
Q ss_pred HHHHHhcCCCCChhhHHHHHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcc
Q 005966 301 FQLMQFEGVRPNSLTIGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTV 380 (667)
Q Consensus 301 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 380 (667)
|..-... ...+.++.+...+++-+.+- ..++.+....-.+.+++.+.|.-++|.+.+-+...+.
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-- 882 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-- 882 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH--
Confidence 6543210 11223333333333222221 2235556666667777777777777766665544332
Q ss_pred cHHHHHHHHHhCCChHHHHHHHHHH
Q 005966 381 PWNAILAGCVHNGLARKAVELFRQM 405 (667)
Q Consensus 381 ~~~~li~~~~~~~~~~~A~~~~~~m 405 (667)
..+..|...+++.+|.++-++.
T Consensus 883 ---aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 883 ---AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhc
Confidence 3345566666677776665543
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.51 E-value=0.0012 Score=50.20 Aligned_cols=81 Identities=10% Similarity=0.015 Sum_probs=69.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHcCCC-CCCcccHHHHHHHhcccc--------chHHHHHHHHHHHHhCCCCchH
Q 005966 77 LYNTVMKMYAQNGASHDSLKMFLGMLRLGEY-NPDNYTYPIVIKACTDLA--------WRKLGIALHGRVLITGFDMDTF 147 (667)
Q Consensus 77 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~ 147 (667)
+....|..+...+++...-.+|+.+.+. ++ -|+..+|+.++.+.+++. +.-....+|++|+..+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN-~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRN-GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 4455677777889999999999999999 78 899999999998887543 4556788999999999999999
Q ss_pred HHHHHHHHHHh
Q 005966 148 VGNCLIAMYMN 158 (667)
Q Consensus 148 ~~~~li~~~~~ 158 (667)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 189
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.49 E-value=0.00015 Score=46.01 Aligned_cols=42 Identities=26% Similarity=0.416 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHH
Q 005966 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSK 627 (667)
Q Consensus 586 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 627 (667)
.++..+..++...|++++|++.++++++..|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999999988875
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.48 E-value=0.00025 Score=50.67 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=52.1
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHhhccCC
Q 005966 552 RADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHG-NVELGEVAAKWLFELEP 616 (667)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 616 (667)
++..|..++..+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456777888888888888888888876 4455 5567888888888888 69999999999998887
No 191
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.44 E-value=0.0033 Score=61.84 Aligned_cols=118 Identities=13% Similarity=0.124 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--CCcchHH
Q 005966 411 EPNDATLNSLLPAYAILADLQQAMNIHCYLIRY--GFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD--KDIVVWS 486 (667)
Q Consensus 411 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~ 486 (667)
+.+...+..++..+....+++.+..++-..... ....-+.+..++++.|.+.|..+++..+++.=..-| ||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344445555555555555555555555554432 112223333455566666666666666555544444 5666666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005966 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528 (667)
Q Consensus 487 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 528 (667)
.|+..+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 666666666666666666555555544444444444444433
No 192
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.44 E-value=0.096 Score=53.29 Aligned_cols=156 Identities=8% Similarity=0.057 Sum_probs=93.8
Q ss_pred HhhhcCChhhHHHhhcccCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCC----cccHHHHHHHhccccchH
Q 005966 53 LVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPD----NYTYPIVIKACTDLAWRK 128 (667)
Q Consensus 53 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~ 128 (667)
+-+-.|++++|++++-++-.+| .-|..+.+.|+|-....+++.- |...| ..+++.+...++....++
T Consensus 743 i~~~~g~feeaek~yld~drrD-----LAielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 743 ISAFYGEFEEAEKLYLDADRRD-----LAIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred HhhhhcchhHhhhhhhccchhh-----hhHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444578888888887776666 3355666777776666655432 22222 245777777777777777
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 005966 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGV 208 (667)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 208 (667)
+|.+.|..-... ...+.+|.+..++++-+.+...+++ +....-.+...+.+.|.-++|.+.|-+.-
T Consensus 814 ~A~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s---- 879 (1189)
T KOG2041|consen 814 EAAKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS---- 879 (1189)
T ss_pred HHHHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----
Confidence 777777543211 2356666677777777766666655 33445566677777777777777664331
Q ss_pred CCChHHHHHHHHHcccCcchHHHHHHHH
Q 005966 209 EPDCASVVSVLPACGYLKEIEMGRMIHE 236 (667)
Q Consensus 209 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 236 (667)
.| ...+.+|...++|.+|.++-+
T Consensus 880 ~p-----kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 880 LP-----KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred Cc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 12 123445566666666655543
No 193
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.43 E-value=0.00051 Score=66.62 Aligned_cols=63 Identities=13% Similarity=0.039 Sum_probs=37.4
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 005966 552 RADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHA----VWGALLGACVIHGNVELGEVAAKWLFEL 614 (667)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 614 (667)
+...++.+..+|.+.|++++|+..|++. .+.|+.. +|..+..+|...|+.++|+..+++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455666666666666666666666653 4555432 3566666666666666666666666665
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.40 E-value=0.02 Score=47.92 Aligned_cols=125 Identities=9% Similarity=0.032 Sum_probs=61.0
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHH
Q 005966 480 KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI 559 (667)
Q Consensus 480 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 559 (667)
|.+..--.|..++.+.|+..+|...|++...--+.-|......+.++....+++..|..+++++.+.+...-+++....+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 33444444555555555555665555555543233444555555555555556666666555555422211222233445
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 005966 560 VDLLGRAGRLDEAYDLIRTM-PLKPTHAVWGALLGACVIHGNVELG 604 (667)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A 604 (667)
...|...|++++|...|+.. ..-|++...........++|+.++|
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHH
Confidence 55555566666555555554 3444444333333334444443333
No 195
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.40 E-value=0.0025 Score=48.48 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCChHHHHHHHHHcccCc--------chHHHHHHHHHHHhcCCCcchhH
Q 005966 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGV-EPDCASVVSVLPACGYLK--------EIEMGRMIHELVAGGRLGKNIAA 249 (667)
Q Consensus 179 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 249 (667)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-....+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556667777999999999999999999 999999999999876543 23356778888888899999999
Q ss_pred HHHHHHHHHh
Q 005966 250 WNALVDMYVK 259 (667)
Q Consensus 250 ~~~l~~~~~~ 259 (667)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 196
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.39 E-value=0.00047 Score=49.93 Aligned_cols=65 Identities=18% Similarity=0.293 Sum_probs=52.6
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHH
Q 005966 561 DLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625 (667)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 625 (667)
..|.+.+++++|+++++++ ...| ++..|......+...|++++|.+.++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 5678888999999998887 4555 556777788888999999999999999999999877665543
No 197
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.39 E-value=0.0039 Score=61.33 Aligned_cols=117 Identities=11% Similarity=0.072 Sum_probs=63.7
Q ss_pred CCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcC--CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC----CChhHH
Q 005966 208 VEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGR--LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE----RDVVTW 281 (667)
Q Consensus 208 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 281 (667)
...+......++..+....+++.+..++-...... ...-..|..++++.|.+.|..++++.++..=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 33445555556666666666666666555555431 111223344666666666666666665555443 566666
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhh
Q 005966 282 TSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACS 324 (667)
Q Consensus 282 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 324 (667)
|.+|..+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 6666666666666666666666555555455555544444443
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.35 E-value=0.0033 Score=49.97 Aligned_cols=84 Identities=20% Similarity=0.050 Sum_probs=43.9
Q ss_pred HHHhhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC---CCchHHHHHHHHhhc
Q 005966 561 DLLGRAGRLDEAYDLIRTM---PLKPT--HAVWGALLGACVIHGNVELGEVAAKWLFELEPE---NPGNYVLLSKLYSAV 632 (667)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 632 (667)
.++-..|+.++|+.+|++. +..+. ...+-.+...+...|++++|..++++.....|+ +......++-++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3444455555555555543 11111 123444555556666666666666666665555 444455555566666
Q ss_pred CCchHHHHHHHH
Q 005966 633 RRWKDAENVRDV 644 (667)
Q Consensus 633 g~~~~A~~~~~~ 644 (667)
|++++|++.+-.
T Consensus 89 gr~~eAl~~~l~ 100 (120)
T PF12688_consen 89 GRPKEALEWLLE 100 (120)
T ss_pred CCHHHHHHHHHH
Confidence 666666665543
No 199
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.34 E-value=0.00078 Score=63.27 Aligned_cols=130 Identities=8% Similarity=0.008 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhH---HhcCCCC-chhHHHHHHHHHhhcCChHHHHHHHHhC-------C-CCCCH
Q 005966 518 VTFTSALHACSHGGLLDEGLDLFNFML---ENHQTCS-RADHYTCIVDLLGRAGRLDEAYDLIRTM-------P-LKPTH 585 (667)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~ 585 (667)
..|..|...|.-.|+++.|+...+.=+ +.+|... ....+..+.+++.-.|+++.|.+.|+.. + .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 457777777778899999988766432 2244322 2345677888999999999999988864 1 11233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccC------CCCCchHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 586 AVWGALLGACVIHGNVELGEVAAKWLFELE------PENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 586 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
....+|.+.|.-..++++|+..+.+=+.+. .....++.+|+.+|...|..++|+.+.+.-++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 456678888888888999999888654322 22356888999999999999999998877543
No 200
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.29 E-value=0.0078 Score=47.87 Aligned_cols=91 Identities=20% Similarity=0.234 Sum_probs=59.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-chhHHHHHHHHHh
Q 005966 488 IIAGYGMHGHGETAVSLFKEMVQSGVQPNE--VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCS-RADHYTCIVDLLG 564 (667)
Q Consensus 488 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 564 (667)
+..++-..|+.++|+.+|++....|+.... ..+..+.+++...|++++|..+++.....+...+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455667778888888888888887765442 3566677778888888888888888776432211 2222223444666
Q ss_pred hcCChHHHHHHHHh
Q 005966 565 RAGRLDEAYDLIRT 578 (667)
Q Consensus 565 ~~g~~~~A~~~~~~ 578 (667)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888888776544
No 201
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.29 E-value=0.0041 Score=59.15 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=69.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC---CCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHH
Q 005966 487 VIIAGYGMHGHGETAVSLFKEMVQSGV---QPNE--VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561 (667)
Q Consensus 487 ~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 561 (667)
.....|...|++++|.+.|.+..+... .+.. ..|.....+|.+ +++++|...++++.+
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~---------------- 102 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIE---------------- 102 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHH----------------
Confidence 345567777888888877777654211 1111 123333333333 366666666555543
Q ss_pred HHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhccCCCC------CchHHHHHHHHhhcCC
Q 005966 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH-GNVELGEVAAKWLFELEPEN------PGNYVLLSKLYSAVRR 634 (667)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~ 634 (667)
.|...|++..|-+++.+ +...|... |+++.|++.|+++.+....+ ..++..++.++.+.|+
T Consensus 103 ~y~~~G~~~~aA~~~~~------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 103 IYREAGRFSQAAKCLKE------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HHHHCT-HHHHHHHHHH------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHhcCcHHHHHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 45555655555554443 44445555 66666666666665532111 1234456666777777
Q ss_pred chHHHHHHHHhhhC
Q 005966 635 WKDAENVRDVMDEK 648 (667)
Q Consensus 635 ~~~A~~~~~~~~~~ 648 (667)
+++|.+.|+++...
T Consensus 171 y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 171 YEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666543
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.27 E-value=0.0053 Score=56.90 Aligned_cols=94 Identities=13% Similarity=0.042 Sum_probs=63.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC---CchHHHHHH
Q 005966 556 YTCIVDLLGRAGRLDEAYDLIRTM-PLKPTH----AVWGALLGACVIHGNVELGEVAAKWLFELEPEN---PGNYVLLSK 627 (667)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 627 (667)
|..-+..+.+.|++++|+..|+.. ...|+. ..+..++..+...|+++.|...|+++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444445567777877777776 334432 466667777777788888888888877777664 445556677
Q ss_pred HHhhcCCchHHHHHHHHhhhCC
Q 005966 628 LYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 628 ~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
+|...|++++|.++++++.+..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 7777788888888877776654
No 203
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.049 Score=51.85 Aligned_cols=256 Identities=9% Similarity=-0.044 Sum_probs=138.1
Q ss_pred HHHHhhccCChhhHhHHHHHHHHhCCCc-hhhhh--hHhhhcCChhhHHHhhcccC-CCCc--chHHHHHHHHHhCCCch
Q 005966 19 LVQQYAATKSIAGTKQLHAFIITSGPLF-THLRS--SLVRAYGHVSNVRILFDEMS-ERSS--FLYNTVMKMYAQNGASH 92 (667)
Q Consensus 19 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~--~~~~~~g~~~~A~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~ 92 (667)
...++....++..|...+..+++..|.+ ++..+ ..|...|++++|.--...-. -+|. ..+.-.-+.+...++..
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 4445556677889999999999999998 66555 66777788887765443221 1111 11222222222222222
Q ss_pred HH---------------HHHHHHhHHcCCCCCCcccHHHHH-HHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 005966 93 DS---------------LKMFLGMLRLGEYNPDNYTYPIVI-KACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMY 156 (667)
Q Consensus 93 ~a---------------~~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 156 (667)
+| +..++.....-.-+|...++..+- .++.-.+++.+|.++--..++.. ..+....-.-..++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~ 213 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCL 213 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhccccc
Confidence 22 222222222200112223333332 44556778888887777776665 33333322222334
Q ss_pred HhcCCHHHHHHHhcccCCCChhhHH---------------HHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005966 157 MNFGEVKAARKVFDAMWEHSVVSWN---------------TLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPA 221 (667)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~~~~~~~~---------------~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 221 (667)
--.++.+.|...|++-...++.... .=..-..++|++..|.+.+.+.+. +.|+
T Consensus 214 yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~---------- 281 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN--IDPS---------- 281 (486)
T ss_pred ccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc--CCcc----------
Confidence 4456777777777776544332221 111223344555555555555443 2232
Q ss_pred cccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH---HHHHHHHHHhCCChHHHH
Q 005966 222 CGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVT---WTSMINGYALNGDVRNAL 298 (667)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~ 298 (667)
+..++...|-.......+.|+.++|+.--+....-|..- |-.-..++...++|++|.
T Consensus 282 --------------------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 282 --------------------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred --------------------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234566667777777777888888887777776655432 222234455567778888
Q ss_pred HHHHHHHhc
Q 005966 299 GLFQLMQFE 307 (667)
Q Consensus 299 ~~~~~m~~~ 307 (667)
+-|++..+.
T Consensus 342 ~d~~~a~q~ 350 (486)
T KOG0550|consen 342 EDYEKAMQL 350 (486)
T ss_pred HHHHHHHhh
Confidence 777776654
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.21 E-value=0.0064 Score=54.46 Aligned_cols=168 Identities=12% Similarity=0.116 Sum_probs=87.2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCCc----chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--
Q 005966 456 IDIYSKCGSLESAHKIFSEIPIKDKDI----VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH-- 529 (667)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-- 529 (667)
...+...|++.+|.+.|+.+....|+. ...-.++.++.+.|+++.|...++++++.-+.-....+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 344455566666666666655544432 23445566667777777777777776664222111112222111111
Q ss_pred -----------cCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005966 530 -----------GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH 598 (667)
Q Consensus 530 -----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 598 (667)
.+...+|...|+.+++ -|-......+|...+..+...- ...-..++..|.+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHCT
T ss_pred hCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHc
Confidence 1122234444444443 3333333344443333331000 00112356668899
Q ss_pred CCHHHHHHHHHHhhccCCCCC---chHHHHHHHHhhcCCchHHHH
Q 005966 599 GNVELGEVAAKWLFELEPENP---GNYVLLSKLYSAVRRWKDAEN 640 (667)
Q Consensus 599 g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~ 640 (667)
|.+..|..-++.+++.-|+.+ .++..++..|.+.|..+.|..
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999999999999854 356788999999999885543
No 205
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.20 E-value=0.023 Score=54.08 Aligned_cols=110 Identities=17% Similarity=0.260 Sum_probs=54.4
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHc-CChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHh
Q 005966 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMH-GHGETAVSLFKEMVQS----GVQPN--EVTFTSALHACS 528 (667)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~----~~~p~--~~~~~~ll~~~~ 528 (667)
+..|...|++..|-..+.+ +...|... |++++|++.|++..+. | .+. ..++..+...+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~-------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE-------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH-------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHH-------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 4455566666655554443 33445555 6677777777665542 2 111 123455566666
Q ss_pred ccCCHHHHHHHHHHhHHhcCC----CCchh-HHHHHHHHHhhcCChHHHHHHHHhC
Q 005966 529 HGGLLDEGLDLFNFMLENHQT----CSRAD-HYTCIVDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~----~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (667)
+.|++++|.++|+++...... ..++. .+...+-++...|++..|.+.+++.
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777766552111 11111 2223333455566666666666664
No 206
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.17 E-value=0.0037 Score=59.14 Aligned_cols=129 Identities=7% Similarity=0.058 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 005966 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR-AGRLDEAYDLIRTM--PLKPTHAVWGALLGA 594 (667)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 594 (667)
.+|..++....+.+..+.|..+|.++.+... .+..+|-..+.+-.+ .++.+.|..+|+.. ....+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4677788888888889999999999986333 334456555555344 56667799999987 355577889999999
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCC---chHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 595 CVIHGNVELGEVAAKWLFELEPENP---GNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 595 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
+.+.|+.+.|..+|++++..-|.+. ..|...+..=.+.|+.+...++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999877754 47888888888899999999999998765
No 207
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.42 Score=49.47 Aligned_cols=111 Identities=13% Similarity=0.086 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005966 516 NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGAC 595 (667)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 595 (667)
...+.+--+.-+...|+..+|.++-.+.+= ||...|-.-+.+++..++|++-+++-++.+. +..|.-++.+|
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c 754 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEAC 754 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHH
Confidence 334555566667788999999888776543 8888888888999999999998888777642 55677788899
Q ss_pred HhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHH
Q 005966 596 VIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642 (667)
Q Consensus 596 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 642 (667)
.++|+.++|...+-+.-.+. ..+.+|.+.|++.+|.+.-
T Consensus 755 ~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHH
Confidence 99999999988876643332 5778888999998888753
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.033 Score=49.52 Aligned_cols=133 Identities=8% Similarity=-0.026 Sum_probs=84.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC----CCchhHHHHHH
Q 005966 485 WSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT----CSRADHYTCIV 560 (667)
Q Consensus 485 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~ 560 (667)
-+.++..+.-.|.+.-.+..+++.++...+.++.....|.+.-.+.|+.+.|...|+...+..+. .-...+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34555566666777777777888777665556666777777777788888888888866653322 11222222333
Q ss_pred HHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 561 DLLGRAGRLDEAYDLIRTMP-LKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
..+.-++++.+|...+.+.. ..| |+...|.-.-+..-.|+...|++.++.+++..|.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 44556677777777777763 222 4455555555555667777777777777777776
No 209
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.025 Score=51.80 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=86.4
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhc---CChHHHHHHHHhC-C
Q 005966 505 FKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA---GRLDEAYDLIRTM-P 580 (667)
Q Consensus 505 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~ 580 (667)
++.-+..+ +-|...|..|...|...|+++.|...|.+..+. .+++...+..+..++... ....++..+|+++ .
T Consensus 145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 33333443 446789999999999999999999999999884 445556677777666543 3567788999988 5
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCc
Q 005966 581 LKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620 (667)
Q Consensus 581 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 620 (667)
.+| |......|...+...|++.+|...++.+++..|.+..
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 555 6667777788899999999999999999998887543
No 210
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.006 Score=57.96 Aligned_cols=94 Identities=16% Similarity=0.093 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhc
Q 005966 555 HYTCIVDLLGRAGRLDEAYDLIRTM-P-LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAV 632 (667)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 632 (667)
.+..+.-+|.+.+++.+|++..++. . .+++.-.+..-..++...|+++.|+..|++++++.|+|-.+...|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 4667888999999999999998887 4 4457778888899999999999999999999999999999988888887776
Q ss_pred CCchHH-HHHHHHhhhC
Q 005966 633 RRWKDA-ENVRDVMDEK 648 (667)
Q Consensus 633 g~~~~A-~~~~~~~~~~ 648 (667)
.++.+. .++|..|-.+
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 655544 7788888654
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.069 Score=47.57 Aligned_cols=131 Identities=14% Similarity=0.036 Sum_probs=97.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHH-----HHH
Q 005966 382 WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVST-----GLI 456 (667)
Q Consensus 382 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~ 456 (667)
.+.++..+.-.|.+.-.+.++++.++...+.+..-...+.+.-.+.||.+.|...++...+..-..+...++ ...
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 455666667778888888889988887667777778888888888999999999998776543333333333 334
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 005966 457 DIYSKCGSLESAHKIFSEIPIKD-KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512 (667)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 512 (667)
..|.-.+++..|...+.+++..+ .++...|.-.-+..-.|+..+|++..+.|++..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45666788888888888888766 355666666666667788899999999998863
No 212
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.07 E-value=0.00061 Score=50.10 Aligned_cols=62 Identities=8% Similarity=0.056 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhcc----CCCC---CchHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 586 AVWGALLGACVIHGNVELGEVAAKWLFEL----EPEN---PGNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 586 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
.+++.+...+...|++++|+..+++++++ ++++ ..++..++.+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35677777788888888888888887753 2222 34677889999999999999999888654
No 213
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.05 E-value=0.013 Score=47.50 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=67.8
Q ss_pred HHHHHhhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCc---hHHHHHHHHh
Q 005966 559 IVDLLGRAGRLDEAYDLIRTMP----LKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG---NYVLLSKLYS 630 (667)
Q Consensus 559 l~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~ 630 (667)
-.....+.|++++|.+.|+.+. ..| ....-..++.++.+.|+++.|...+++.++++|.++. +++..|-++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3444557888888888888872 222 3456777889999999999999999999999998876 4555666666
Q ss_pred hcCC---------------chHHHHHHHHhhhCC
Q 005966 631 AVRR---------------WKDAENVRDVMDEKG 649 (667)
Q Consensus 631 ~~g~---------------~~~A~~~~~~~~~~~ 649 (667)
+... ..+|...|+++++.-
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 6655 677888888877653
No 214
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.99 E-value=0.14 Score=47.23 Aligned_cols=199 Identities=13% Similarity=0.007 Sum_probs=95.7
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccH---HHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHH
Q 005966 75 SFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTY---PIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNC 151 (667)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 151 (667)
...+-.....+...|++++|++.|+.+... .|-+..+- ..+..++.+.+++++|...+++.++..+.....-+..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 333334555566677888888888887765 22222222 3344666677777777777777777654322223333
Q ss_pred HHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHH
Q 005966 152 LIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMG 231 (667)
Q Consensus 152 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 231 (667)
.+.+.+....-...+.-+..+...+ .......+|+..|+++++. -|+. .-..+|
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~-----------rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A 163 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSD-----------RDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDA 163 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccc-----------cCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHH
Confidence 3333321100000000000000000 0000112344444444442 2331 112223
Q ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHHHHHhCCChHHHHHHHHHHH
Q 005966 232 RMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE--RD----VVTWTSMINGYALNGDVRNALGLFQLMQ 305 (667)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~ 305 (667)
...+..+...- ...--.+...|.+.|.+..|..-|+.+.+ |+ ..+...++.+|...|..++|......+.
T Consensus 164 ~~rl~~l~~~l----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 164 TKRLVFLKDRL----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 22222222110 01112455667777787777777777765 32 3345567778888888888877766554
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.99 E-value=0.12 Score=49.93 Aligned_cols=161 Identities=17% Similarity=0.123 Sum_probs=91.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCC----C-CcchHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005966 454 GLIDIYSKCGSLESAHKIFSEIPIKD----K-DIVVWSVIIAGYGM---HGHGETAVSLFKEMVQSGVQPNEVTFTSALH 525 (667)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 525 (667)
.++-.|-...+++..+++.+.+.... + ....-....-++.+ .|+.++|++++..+....-.+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33444556666666666666665541 0 11112233344555 6777777777777555555666677776665
Q ss_pred HHhc---------cCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChH----HHHHHH---Hh-C------CCC
Q 005966 526 ACSH---------GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLD----EAYDLI---RT-M------PLK 582 (667)
Q Consensus 526 ~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~------~~~ 582 (667)
.|-. ....++|...|.+.-+ ..|+...--.++..+.-.|... +..++- .. . ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5422 1246677777776644 3344432222333333333211 222222 11 1 122
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 583 PTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 583 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
.|.-.+.+++.++.-.||.++|.+.+++++++.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 34456678888899999999999999999999877
No 216
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.98 E-value=0.3 Score=45.09 Aligned_cols=195 Identities=21% Similarity=0.154 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-H
Q 005966 451 VSTGLIDIYSKCGSLESAHKIFSEIPI--KD-KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH-A 526 (667)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~ 526 (667)
........+...+.+..+...+..... .. .....+......+...+++..+...+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 333344444444444444444444332 11 223334444444444444555555555554432221 111111111 4
Q ss_pred HhccCCHHHHHHHHHHhHHhcCC--CCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCH
Q 005966 527 CSHGGLLDEGLDLFNFMLENHQT--CSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPT--HAVWGALLGACVIHGNV 601 (667)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~ 601 (667)
+...|+++.|...+..... ... ......+......+...++.++|...+.+. ...|+ ...+..+...+...+++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 140 LYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 4455555555555555533 110 011222222333344455555555555544 22222 34444455555555555
Q ss_pred HHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 602 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
+.|...+..+....|.....+..++..+...|+++++...+++..+
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555444444444444444445555555555443
No 217
>PRK11906 transcriptional regulator; Provisional
Probab=96.93 E-value=0.013 Score=57.37 Aligned_cols=145 Identities=12% Similarity=0.088 Sum_probs=101.5
Q ss_pred ChHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHHhcc---------CCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhh
Q 005966 497 HGETAVSLFKEMVQ-SGVQPNE-VTFTSALHACSHG---------GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565 (667)
Q Consensus 497 ~~~~a~~~~~~m~~-~~~~p~~-~~~~~ll~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 565 (667)
..+.|+.+|.+... ..+.|+. ..|..+..++... ....+|.++-++..+ -.+.|+.....++.++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 35678889999882 2346664 4566666554322 234566777777776 344566667777777777
Q ss_pred cCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHH--HHHHHHhhcCCchHHHHH
Q 005966 566 AGRLDEAYDLIRTM-PLKPTH-AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYV--LLSKLYSAVRRWKDAENV 641 (667)
Q Consensus 566 ~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~ 641 (667)
.++++.|...|++. ...||. .+|......+.-.|+.++|.+.++++++++|....+-. ..++.|+..+ .++|+++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 88899999999988 467754 46777777788899999999999999999998655444 4444576655 6777777
Q ss_pred HHH
Q 005966 642 RDV 644 (667)
Q Consensus 642 ~~~ 644 (667)
+-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 643
No 218
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.93 E-value=0.0075 Score=47.07 Aligned_cols=88 Identities=22% Similarity=0.229 Sum_probs=47.9
Q ss_pred HHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC----chHHHHHHHHhhcCCc
Q 005966 562 LLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENP----GNYVLLSKLYSAVRRW 635 (667)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~ 635 (667)
++...|+++.|++.|.+. ..-| ....||.-..+++-+|+.++|..-+++++++.-+.. .+|..-+.+|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 344555566666555554 2222 445556666666666666666666666665543321 2344555556666666
Q ss_pred hHHHHHHHHhhhCC
Q 005966 636 KDAENVRDVMDEKG 649 (667)
Q Consensus 636 ~~A~~~~~~~~~~~ 649 (667)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666555444
No 219
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.93 E-value=0.42 Score=45.91 Aligned_cols=104 Identities=16% Similarity=0.100 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhc
Q 005966 383 NAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKC 462 (667)
Q Consensus 383 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (667)
+..+.-+...|+...|.++-++.. .|+...|...+.+++..++|++-.++... .-++.-|...+..+.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 333444444455555544444432 34445555555555555555544433211 12234455555555555
Q ss_pred CCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHH
Q 005966 463 GSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSL 504 (667)
Q Consensus 463 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 504 (667)
|+..+|..++..+. +..-+..|.+.|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~~--------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKIP--------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhCC--------hHHHHHHHHHCCCHHHHHHH
Confidence 55555555554421 13344455555555555443
No 220
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.87 E-value=0.011 Score=51.19 Aligned_cols=88 Identities=18% Similarity=0.299 Sum_probs=67.2
Q ss_pred CCcchHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----------------CCHHHHHH
Q 005966 480 KDIVVWSVIIAGYGM-----HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG----------------GLLDEGLD 538 (667)
Q Consensus 480 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------g~~~~A~~ 538 (667)
.+-.+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 555666666666653 466777777888888888888888899888876543 23456888
Q ss_pred HHHHhHHhcCCCCchhHHHHHHHHHhhcCC
Q 005966 539 LFNFMLENHQTCSRADHYTCIVDLLGRAGR 568 (667)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 568 (667)
++++|.. +|+.||.+++..+++.+.+.+.
T Consensus 125 lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 9999988 8888999999999888877664
No 221
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.83 E-value=0.015 Score=50.46 Aligned_cols=89 Identities=10% Similarity=0.065 Sum_probs=59.4
Q ss_pred CCChhhHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccC----------------cchHHHH
Q 005966 174 EHSVVSWNTLISGYFKN-----AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYL----------------KEIEMGR 232 (667)
Q Consensus 174 ~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~~~~~a~ 232 (667)
.++..+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+. .+-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 34555566666655543 45555556667777777777777777777765432 1345677
Q ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHhcCC
Q 005966 233 MIHELVAGGRLGKNIAAWNALVDMYVKCGS 262 (667)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 262 (667)
.++++|...|+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 888888888888888888888887766554
No 222
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.81 E-value=0.25 Score=44.44 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCCc---hHHHHHHHHhhcCCchHHHHHHHHhhhCCCccCCCeeEEEeCCE
Q 005966 590 ALLGACVIHGNVELGEVAAKWLFELEPENPG---NYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAHSLIEVRNI 664 (667)
Q Consensus 590 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (667)
.+.+.|.+.|.+..|..-++.+++.-|+.+. ++..+..+|.+.|-.++|...-+-+.. +.. ...|+..+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~-N~p---~s~~~~~~~~ 245 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA-NYP---DSQWYKDAYR 245 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh-cCC---CCcchhhhhh
Confidence 4556688899999999999999888776443 566778889999999988887655533 332 3336654433
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.76 E-value=0.039 Score=49.41 Aligned_cols=141 Identities=13% Similarity=0.075 Sum_probs=78.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhh
Q 005966 488 IIAGYGMHGHGETAVSLFKEMVQSGVQPN--EVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR 565 (667)
Q Consensus 488 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 565 (667)
....+...|++.+|.+.|+++....+... ......++.++.+.|++++|...++..++.++..|... +.....+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~~~ 89 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGLSY 89 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHHHH
Confidence 34456677888888888888877532211 23455667777888888888888888877665545432 1111111111
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCc-----------------hHHHHHHH
Q 005966 566 AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG-----------------NYVLLSKL 628 (667)
Q Consensus 566 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----------------~~~~l~~~ 628 (667)
........ ......+....|...++.++...|+++. .-..++..
T Consensus 90 ~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111110 0112233445566666666666666443 23457888
Q ss_pred HhhcCCchHHHHHHHHhhhC
Q 005966 629 YSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 629 ~~~~g~~~~A~~~~~~~~~~ 648 (667)
|.+.|.+..|...++.+.+.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 224
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.75 E-value=0.46 Score=43.82 Aligned_cols=222 Identities=18% Similarity=0.145 Sum_probs=149.6
Q ss_pred ChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHhcCCHHHHHHH
Q 005966 394 LARKAVELFRQMLVEVVE-PNDATLNSLLPAYAILADLQQAMNIHCYLIRY-GFLSVVEVSTGLIDIYSKCGSLESAHKI 471 (667)
Q Consensus 394 ~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 471 (667)
....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444433222 12455556666666777777777776666543 3344555666667777777888888888
Q ss_pred HhhCCCCCCCc-chHHHHHH-HHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 005966 472 FSEIPIKDKDI-VVWSVIIA-GYGMHGHGETAVSLFKEMVQSGV--QPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH 547 (667)
Q Consensus 472 ~~~~~~~~~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 547 (667)
+.......++. ........ .+...|+++.|...+.+...... ......+......+...++.+.+...+....+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-- 195 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK-- 195 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--
Confidence 88777654333 22333333 68889999999999999866321 11233444444556778899999999999987
Q ss_pred CCCC-chhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 548 QTCS-RADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPT-HAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 548 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
..+. ....+..+...+...+++++|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3333 4667888888899999999999998887 44554 455555666655777899999999999999887
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0056 Score=58.16 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 586 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
.+++.+..+|.+.+++..|++...++++++|.|+.+++.-+.+|...|+++.|+..|+++++..+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 46778888899999999999999999999999999999999999999999999999999987653
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=1 Score=46.82 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=36.2
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 005966 456 IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535 (667)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 535 (667)
+.-+...|+..+|.++-.+..- ||-..|-.-+.++...+++++-.++-+.+. .+.-|.-...+|.+.|+.++
T Consensus 691 v~~li~~g~~k~a~ql~~~Fki--pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKI--PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCC--cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHH
Confidence 3334444555555555554444 555555555555555555544433322221 12334444445555555555
Q ss_pred HHHHHHH
Q 005966 536 GLDLFNF 542 (667)
Q Consensus 536 A~~~~~~ 542 (667)
|.+++-+
T Consensus 763 A~KYipr 769 (829)
T KOG2280|consen 763 AKKYIPR 769 (829)
T ss_pred Hhhhhhc
Confidence 5554443
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.64 E-value=0.0028 Score=46.48 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhCC-----CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 005966 555 HYTCIVDLLGRAGRLDEAYDLIRTMP-----LK---PT-HAVWGALLGACVIHGNVELGEVAAKWLFEL 614 (667)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 614 (667)
+++.+...|...|++++|++.+++.- .. |+ ..++..+...+...|++++|++.+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34455555555555555555555440 11 11 235566666777777777777777776653
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.54 E-value=0.86 Score=44.30 Aligned_cols=142 Identities=17% Similarity=0.239 Sum_probs=89.3
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 005966 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKD---KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTF-TSAL 524 (667)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll 524 (667)
..+|.++++...+..-++.|..+|.+..+.+ +++..+++++.-++. |+..-|..+|+--... .||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456667777777777888888887776654 677778887776654 5667778888765553 3444433 3445
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 005966 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHAVWGALLG 593 (667)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 593 (667)
.-+.+.++-+.|..+|+...+.-....-..+|..+++--..-|++..+..+=+++ ..-|...+...+..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~S 543 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTS 543 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHH
Confidence 5566777888888888866552111112456777777777778887777666665 23344433333333
No 229
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.48 E-value=0.0091 Score=50.34 Aligned_cols=68 Identities=24% Similarity=0.273 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhh-----hCCCccCC
Q 005966 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD-----EKGLRKAP 654 (667)
Q Consensus 587 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~ 654 (667)
.+..++..+...|+++.|....++++..+|-+...+..+..+|...|+..+|.+.++++. +.|+.++|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 556677778899999999999999999999999999999999999999999999999875 45665544
No 230
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.40 E-value=0.02 Score=55.99 Aligned_cols=59 Identities=17% Similarity=0.045 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCch----hHHHHHHHHHhhcCChHHHHHHHHhC
Q 005966 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA----DHYTCIVDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (667)
..++.+..+|...|++++|+..|++.++. .|+. ..|..+..+|...|+.++|++.++++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555555555555555441 1221 22455555555555555555555554
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.16 Score=46.58 Aligned_cols=116 Identities=12% Similarity=0.082 Sum_probs=49.7
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHHH
Q 005966 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGA---LLGACVIHGNVELG 604 (667)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~A 604 (667)
...|++.+|..+|+..... .+-+...-..++.+|...|+.+.|..++..++..-....+.. -+....+..+..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 3445555555555555441 112233344455555555555555555555532221111111 11111222221111
Q ss_pred HHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 605 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
..+++-...+|+|...-..|+..|...|+.++|.+.+=.+.
T Consensus 223 -~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 223 -QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred -HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12233344555555555555555555555555555444433
No 232
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.29 E-value=0.52 Score=47.84 Aligned_cols=88 Identities=14% Similarity=0.091 Sum_probs=61.0
Q ss_pred CchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHH----
Q 005966 551 SRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS---- 626 (667)
Q Consensus 551 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~---- 626 (667)
.+.++...+..-+.+...+.-|-++|.+|+.. ..++......+++.+|..+.++.-+..|+ +|.-.+
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~d---Vy~pyaqwLA 815 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKDD---VYMPYAQWLA 815 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCcccccc---ccchHHHHhh
Confidence 34455656666666777888899999998622 34666677889999999999888777776 443333
Q ss_pred ---------HHHhhcCCchHHHHHHHHhhh
Q 005966 627 ---------KLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 627 ---------~~~~~~g~~~~A~~~~~~~~~ 647 (667)
.+|.+.|+-.||..+++++..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 456666666666666666654
No 233
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.28 E-value=0.06 Score=51.13 Aligned_cols=95 Identities=8% Similarity=-0.022 Sum_probs=47.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHH----hcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-------C-CCCCHH
Q 005966 519 TFTSALHACSHGGLLDEGLDLFNFMLE----NHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-------P-LKPTHA 586 (667)
Q Consensus 519 ~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~ 586 (667)
.+..+..++.-.|+++.|.+.|+.... ............+|.+.|.-..++++|+.++.+- . ..-...
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 455555556666666666665554322 1111112223334555555555666666655442 0 111233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 005966 587 VWGALLGACVIHGNVELGEVAAKWLFE 613 (667)
Q Consensus 587 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 613 (667)
.+.+|..++...|..++|..+.++.++
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 455566666666666666666665543
No 234
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.21 E-value=0.037 Score=51.58 Aligned_cols=239 Identities=10% Similarity=-0.030 Sum_probs=118.4
Q ss_pred HHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh--CCCCC---chHHHHHHHHHHh
Q 005966 389 CVHNGLARKAVELFRQMLVE--VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRY--GFLSV---VEVSTGLIDIYSK 461 (667)
Q Consensus 389 ~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 461 (667)
+..+.+.++|+..+.+-... .....-.++..+..+.+..|.++++...--..++. ....+ -..|..+...+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888877766543 11122346666777777777777765543221111 01111 2233344444444
Q ss_pred cCCHHHHHHHHhhCCCCC---CC---cchHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHhcc
Q 005966 462 CGSLESAHKIFSEIPIKD---KD---IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGV---QP--NEVTFTSALHACSHG 530 (667)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~---~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~~ 530 (667)
.-++.+++.+-+.-.... |. .....++..++.-.+.++++++.|+...+.-- .| ....+..|.+.|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 445555554443322221 10 12223344555555667777777776554211 11 113566666667777
Q ss_pred CCHHHHHHHHHHhHH---hcCCCCchhHHH-----HHHHHHhhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHH
Q 005966 531 GLLDEGLDLFNFMLE---NHQTCSRADHYT-----CIVDLLGRAGRLDEAYDLIRTM-------PLKP-THAVWGALLGA 594 (667)
Q Consensus 531 g~~~~A~~~~~~~~~---~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~ 594 (667)
.++++|.-+..++.+ ..++..-..-|. .|..++...|++-+|.+..++. +..| -...+..+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 777777666555433 122211111122 2334555666666666665554 1122 12234555666
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHh
Q 005966 595 CVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYS 630 (667)
Q Consensus 595 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 630 (667)
|+..||.|.|..-|+++...... .-..++++..
T Consensus 256 yR~~gd~e~af~rYe~Am~~m~~---~gdrmgqv~a 288 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGTMAS---LGDRMGQVEA 288 (518)
T ss_pred HHhcccHhHHHHHHHHHHHHHhh---hhhhHHHHHH
Confidence 67777777777766666655433 3344444443
No 235
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.08 E-value=0.02 Score=48.59 Aligned_cols=101 Identities=16% Similarity=0.059 Sum_probs=55.6
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCch-----hHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHH
Q 005966 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRA-----DHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTH-AVWGALLGACV 596 (667)
Q Consensus 524 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~ 596 (667)
..-+.+.|++++|..-|..+++ ..++.. ..|..-..++.+.+.++.|++-..+. .+.|+. ..+..-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 3445666777777777777766 222221 23444445566666666666665554 344422 23333344555
Q ss_pred hcCCHHHHHHHHHHhhccCCCCCchHHHHH
Q 005966 597 IHGNVELGEVAAKWLFELEPENPGNYVLLS 626 (667)
Q Consensus 597 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 626 (667)
+...++.|++-|+++++.+|....+....+
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 666666777777777776666444433333
No 236
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.05 E-value=0.18 Score=47.31 Aligned_cols=221 Identities=13% Similarity=0.125 Sum_probs=119.2
Q ss_pred HhcCCHHHHHHHHhccCCCC------cccHHHHHHHHHhCCChHHHHHHHHH-HHHC-CCCCCH---HHHHHHHHHHhCc
Q 005966 359 AKCNLVKLSFQVFARTSKKK------TVPWNAILAGCVHNGLARKAVELFRQ-MLVE-VVEPND---ATLNSLLPAYAIL 427 (667)
Q Consensus 359 ~~~g~~~~a~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~-m~~~-g~~p~~---~~~~~ll~~~~~~ 427 (667)
....+.++|+..+.+...+- ..++..+..+.+..|.+++++..--. |.-. ...... ..|..+-.++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667766665543221 12255566677777777766543221 1110 011111 1233333333333
Q ss_pred CCHHHHHHHHHHHHHh-CCCC---CchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-----C--CcchHHHHHHHHHHcC
Q 005966 428 ADLQQAMNIHCYLIRY-GFLS---VVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD-----K--DIVVWSVIIAGYGMHG 496 (667)
Q Consensus 428 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~--~~~~~~~l~~~~~~~~ 496 (667)
-++.+++.+-..-... |..| .-....++..++.-.+.++++.+.|+.....- | ...++-.|...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 3333443333322211 1111 12334456677777778888888887653321 2 3457788888888889
Q ss_pred ChHHHHHHHHHHHH----cCCCCCHHHH-----HHHHHHHhccCCHHHHHHHHHHhHHh---cCCCCc-hhHHHHHHHHH
Q 005966 497 HGETAVSLFKEMVQ----SGVQPNEVTF-----TSALHACSHGGLLDEGLDLFNFMLEN---HQTCSR-ADHYTCIVDLL 563 (667)
Q Consensus 497 ~~~~a~~~~~~m~~----~~~~p~~~~~-----~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~-~~~~~~l~~~~ 563 (667)
++++|.-+..+..+ .++.--...| ..+.-++...|..-+|.+.-++..+. +|..+. ......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99998877766544 2322111122 22344566778888888777766552 233222 23455678888
Q ss_pred hhcCChHHHHHHHHhC
Q 005966 564 GRAGRLDEAYDLIRTM 579 (667)
Q Consensus 564 ~~~g~~~~A~~~~~~~ 579 (667)
...|+.|.|+.-|+..
T Consensus 257 R~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQA 272 (518)
T ss_pred HhcccHhHHHHHHHHH
Confidence 8889888888777663
No 237
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.02 E-value=2.1 Score=43.58 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=90.4
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcc-cHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHH
Q 005966 74 SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNY-TYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCL 152 (667)
Q Consensus 74 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 152 (667)
+...|+.+|.---...+.+.+..+++.++.. .|-.. -|......=.+.|..+.+..+|++.+.. ++.+...|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHH
Confidence 4457877776666666667777888888854 44433 3444444445778888999999888754 56777777777
Q ss_pred HHHHHh-cCCHHHHHHHhcccCC------CChhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005966 153 IAMYMN-FGEVKAARKVFDAMWE------HSVVSWNTLISGYFKNAYAKEALVVFDWMLK 205 (667)
Q Consensus 153 i~~~~~-~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 205 (667)
+..+.. .|+.+...+.|+.... .+..-|...|.--..++++.....++++.++
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 665543 4777887777776533 2455788888877888889999999999887
No 238
>PRK11906 transcriptional regulator; Provisional
Probab=95.97 E-value=0.34 Score=47.80 Aligned_cols=146 Identities=13% Similarity=0.012 Sum_probs=100.7
Q ss_pred CHHHHHHHHhhCC---CCCCC-cchHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 005966 464 SLESAHKIFSEIP---IKDKD-IVVWSVIIAGYGMH---------GHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530 (667)
Q Consensus 464 ~~~~A~~~~~~~~---~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 530 (667)
..+.|..+|.+.. ...|+ ...|..+..++... .+..+|.++-++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567888999888 54455 34555555554322 23566788888888876 45778888888877888
Q ss_pred CCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHh-CCCCCCHH---HHHHHHHHHHhcCCHHHHHH
Q 005966 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT-MPLKPTHA---VWGALLGACVIHGNVELGEV 606 (667)
Q Consensus 531 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~---~~~~l~~~~~~~g~~~~A~~ 606 (667)
++++.|...|++... -.|.....|......+.-.|+.++|.+.+++ +...|... .....+..|+.+ ..+.|+.
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 889999999999987 2333355676677777889999999999998 57777543 333334455554 4566777
Q ss_pred HHHHhhc
Q 005966 607 AAKWLFE 613 (667)
Q Consensus 607 ~~~~~~~ 613 (667)
++-+-.+
T Consensus 429 ~~~~~~~ 435 (458)
T PRK11906 429 LYYKETE 435 (458)
T ss_pred HHhhccc
Confidence 6655433
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.94 E-value=0.5 Score=46.74 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=78.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHH--HHHHHHHHH
Q 005966 520 FTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP--LKPTHA--VWGALLGAC 595 (667)
Q Consensus 520 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~--~~~~l~~~~ 595 (667)
-..+..++.+.|+.++|++.++++.+.........+...|+.++...+.+.++..++.+.. .-|... .|+..+-..
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 3446667778899999999999998744333345567789999999999999999998874 124433 344444333
Q ss_pred HhcCC---------------HHHHHHHHHHhhccCCCCCchHHHH------HHHHhhcCCchHHHHH
Q 005966 596 VIHGN---------------VELGEVAAKWLFELEPENPGNYVLL------SKLYSAVRRWKDAENV 641 (667)
Q Consensus 596 ~~~g~---------------~~~A~~~~~~~~~~~p~~~~~~~~l------~~~~~~~g~~~~A~~~ 641 (667)
+..+| ...|.+.+.++++.+|--|..+..+ -..+.+.|+ .||+.+
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAiaY 407 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIAY 407 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHHH
Confidence 43333 1346678889999888755433211 223445564 555554
No 240
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.93 E-value=1.8 Score=42.19 Aligned_cols=130 Identities=17% Similarity=0.159 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchh-HHHHHHH
Q 005966 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSG-VQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD-HYTCIVD 561 (667)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~ 561 (667)
+|-..+..-.+..-.+.|..+|-+..+.| +.++...++.++.-++ .|+..-|..+|+.-.. .+ ||.. .-+-.+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f-~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KF-PDSTLYKEKYLL 474 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hC-CCchHHHHHHHH
Confidence 45555555566666677777777777766 4455566666666443 4666677777766555 22 3322 2233455
Q ss_pred HHhhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 562 LLGRAGRLDEAYDLIRTM--PLKPT--HAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
.+.+.++-+.|..+|++. ++..+ ..+|..++..-..-|+...+..+-++..+.-|.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 566677777777777754 12222 346666666666777777777777777777766
No 241
>PRK15331 chaperone protein SicA; Provisional
Probab=95.93 E-value=0.15 Score=42.49 Aligned_cols=20 Identities=5% Similarity=-0.159 Sum_probs=8.5
Q ss_pred HHHHhhcCChHHHHHHHHhC
Q 005966 560 VDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~ 579 (667)
..+|...|+.+.|...|+..
T Consensus 112 gqC~l~l~~~~~A~~~f~~a 131 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELV 131 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 34444444444444444433
No 242
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.92 E-value=0.019 Score=33.71 Aligned_cols=32 Identities=31% Similarity=0.276 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 005966 587 VWGALLGACVIHGNVELGEVAAKWLFELEPEN 618 (667)
Q Consensus 587 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 618 (667)
.|..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666667777777777777777766653
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.077 Score=49.04 Aligned_cols=160 Identities=12% Similarity=-0.032 Sum_probs=116.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchh----HHHHHHHHHhhcCC
Q 005966 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRAD----HYTCIVDLLGRAGR 568 (667)
Q Consensus 493 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~ 568 (667)
.-.|+..+|...++++++. .+.|...+...-.+|...|+.+.-...++++... -.++.. ....+..++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4578888999999999986 4567788888889999999999999999988763 234433 33345566778999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC----CCchHHHHHHHHhhcCCchHHHHHH
Q 005966 569 LDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPE----NPGNYVLLSKLYSAVRRWKDAENVR 642 (667)
Q Consensus 569 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 642 (667)
+++|.+.-++. ++.| |.-...+..-.....|+..++.+++++--..=.+ -..-|-+.+-.+.+.+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999887 4444 5555566666677889999999988775332211 1223556777788889999999999
Q ss_pred HHhhhCCCccCCC
Q 005966 643 DVMDEKGLRKAPA 655 (667)
Q Consensus 643 ~~~~~~~~~~~~~ 655 (667)
++=.-+...++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 9854444455555
No 244
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.92 E-value=0.5 Score=37.46 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=82.8
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHH
Q 005966 492 YGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571 (667)
Q Consensus 492 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 571 (667)
+.-.|..++..++..+..... +..-++-++--....-+-+-..++++.+-+- -| ...+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FD----------is~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI----FD----------ISKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-----------GGG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh----cC----------chhhcchHH
Confidence 445678888888888877642 3333333333222223333444444444331 12 124555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCCc
Q 005966 572 AYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651 (667)
Q Consensus 572 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 651 (667)
....+-.+.. +.......+.....+|..+.-.+++..+.+.+..+|..+.-++.+|.+.|+..+|.+++.++=++|++
T Consensus 75 Vi~C~~~~n~--~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRNK--LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhcc--hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 5555555432 34455666777889999999999999888655556889999999999999999999999999998875
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.92 E-value=0.35 Score=49.59 Aligned_cols=115 Identities=17% Similarity=0.078 Sum_probs=67.7
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCchhHHHH-HHHHHhhcCChHHHHHHHHhCC-----C-CCCHHHHHHHHHHHHhcCCHH
Q 005966 530 GGLLDEGLDLFNFMLENHQTCSRADHYTC-IVDLLGRAGRLDEAYDLIRTMP-----L-KPTHAVWGALLGACVIHGNVE 602 (667)
Q Consensus 530 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~-----~-~p~~~~~~~l~~~~~~~g~~~ 602 (667)
....+.|.++++.+.+.+ |+...|.. -...+...|++++|++.|++.- . +-....+..+++.+...++++
T Consensus 246 ~~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 345566666666666522 44444433 2344556677777777776541 1 112334556666677777787
Q ss_pred HHHHHHHHhhccCCCCCch-HHHHHHHHhhcCCc-------hHHHHHHHHhhh
Q 005966 603 LGEVAAKWLFELEPENPGN-YVLLSKLYSAVRRW-------KDAENVRDVMDE 647 (667)
Q Consensus 603 ~A~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~-------~~A~~~~~~~~~ 647 (667)
+|...+.++.+...-.... ++..+-+|...|+. ++|.++|+++..
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 7777777777755443333 33445566677777 777777777654
No 246
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=0.054 Score=49.09 Aligned_cols=101 Identities=15% Similarity=0.161 Sum_probs=58.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCC-CchhHHHHHHHHHhhcCChHHHHHHHHhC----CCCC-CHHHHHHHH
Q 005966 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTC-SRADHYTCIVDLLGRAGRLDEAYDLIRTM----PLKP-THAVWGALL 592 (667)
Q Consensus 519 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~ 592 (667)
.|+.-+. +.+.|++..|...|...++.+.-. -....+-.|+.++...|++++|..+|..+ +..| -+..+..+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555554 445566777777777777632111 01122444666666777777776666655 2222 334555666
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCCc
Q 005966 593 GACVIHGNVELGEVAAKWLFELEPENPG 620 (667)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 620 (667)
....+.|+.++|..+++++.+..|+.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 6666666666666666666666666443
No 247
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.86 E-value=0.12 Score=41.66 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=57.7
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 005966 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS 528 (667)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 528 (667)
..++..++.++++.|+++....+++..-....+... ..+. --....+.|+..++.+++.+|+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHHHH
Confidence 345666677777777777776666655432211000 0000 1112335677777777777777
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHH
Q 005966 529 HGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDL 562 (667)
Q Consensus 529 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 562 (667)
..|++..|.++.+...+.++++.+...|..|+.-
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 7777777777777777777766666667666653
No 248
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.84 E-value=1.7 Score=41.17 Aligned_cols=100 Identities=16% Similarity=0.068 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCcCCHHH---HHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHH
Q 005966 416 TLNSLLPAYAILADLQQ---AMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAG 491 (667)
Q Consensus 416 ~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 491 (667)
++..++.++...+..+. |..+++.+.. .++..+.++..-+..+.+.++.+.+.+.+.+|...-+ ....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLES-EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 45566666666665443 3334444432 2233344444455566666677777777766655422 23344444444
Q ss_pred HH--HcCChHHHHHHHHHHHHcCCCCC
Q 005966 492 YG--MHGHGETAVSLFKEMVQSGVQPN 516 (667)
Q Consensus 492 ~~--~~~~~~~a~~~~~~m~~~~~~p~ 516 (667)
+. .......|...+..+....+.|.
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 31 11223445555555554434443
No 249
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=3.3 Score=43.97 Aligned_cols=54 Identities=9% Similarity=0.167 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 005966 454 GLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMV 509 (667)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 509 (667)
-++..+.+..+.+.+..+.+...+ -++..|..++..+.+.+..+...++..+.+
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~--~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGK--EDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCc--cChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 355667777788888888877766 467788888888888886666555554444
No 250
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.78 E-value=0.063 Score=45.17 Aligned_cols=72 Identities=14% Similarity=0.192 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHH-----HhCCCCchHHHH
Q 005966 77 LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVL-----ITGFDMDTFVGN 150 (667)
Q Consensus 77 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 150 (667)
+...++..+...|++++|+...+.+... .|.+...|..++.++...|+..+|.++|+.+. +.|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 4556777888899999999999999987 67788899999999999999999999998875 458888877644
No 251
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.77 E-value=0.5 Score=39.33 Aligned_cols=42 Identities=7% Similarity=0.093 Sum_probs=18.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 005966 487 VIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSH 529 (667)
Q Consensus 487 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 529 (667)
.++..+...+.......+++.+...+ ..+....+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444444444444444444443 1233344444444443
No 252
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.76 E-value=0.018 Score=33.91 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 586 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
.+|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777777775
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.97 Score=41.66 Aligned_cols=151 Identities=17% Similarity=0.057 Sum_probs=105.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCCh
Q 005966 490 AGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL 569 (667)
Q Consensus 490 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 569 (667)
......|+..+|..+|+....... -+...-..+..+|...|+.+.|..++..+-.+.. .........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcC
Confidence 345678889999999998888642 2445667788889999999999999988754211 11222223345566666666
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC--CCCCchHHHHHHHHhhcCCchHHHHHH
Q 005966 570 DEAYDLIRTMPLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELE--PENPGNYVLLSKLYSAVRRWKDAENVR 642 (667)
Q Consensus 570 ~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~ 642 (667)
.+...+-++....| |...-..+...+...|+.+.|.+.+-.+++.+ -.|..+-..+..++...|.-+.+...+
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 66666666665556 67777888888999999999998888777654 446778888888888888554444433
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.31 Score=45.29 Aligned_cols=160 Identities=9% Similarity=-0.017 Sum_probs=112.6
Q ss_pred HHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHhccCCH
Q 005966 459 YSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTS----ALHACSHGGLL 533 (667)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~----ll~~~~~~g~~ 533 (667)
..-.|+..+|...++++.+..| |..+++..-.++.-.|+.+.-...++++.-. ..||...|.. +.-++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3456788888888888887765 6788888889999999999999999998764 3456544433 33345678999
Q ss_pred HHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 005966 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT------HAVWGALLGACVIHGNVELGEVA 607 (667)
Q Consensus 534 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~ 607 (667)
++|++.-++..+ -.+.|.=..-++...+.-.|++.++.+++.+-...-+ ..-|-...-.+...+.++.|+++
T Consensus 192 ~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 192 DDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999998877 2233443344567778889999999999888642111 11233344445667899999999
Q ss_pred HHHhh--ccCCCCCch
Q 005966 608 AKWLF--ELEPENPGN 621 (667)
Q Consensus 608 ~~~~~--~~~p~~~~~ 621 (667)
|.+-+ ++..+|..+
T Consensus 270 yD~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHHHhhccchhh
Confidence 98543 455555533
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.69 E-value=0.12 Score=46.90 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=36.7
Q ss_pred cCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCch-hHHHHHHHHHhhcCChHH
Q 005966 495 HGHGETAVSLFKEMVQSGVQP--NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA-DHYTCIVDLLGRAGRLDE 571 (667)
Q Consensus 495 ~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~ 571 (667)
.|++..|...|...++..+.- ....+--|..++...|++++|..+|..+.+.++..|.. +.+.-|..+..+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 344555555555544432110 01123334444445555555555555444433333322 334444444445555555
Q ss_pred HHHHHHhC
Q 005966 572 AYDLIRTM 579 (667)
Q Consensus 572 A~~~~~~~ 579 (667)
|-..++++
T Consensus 234 A~atl~qv 241 (262)
T COG1729 234 ACATLQQV 241 (262)
T ss_pred HHHHHHHH
Confidence 55444444
No 256
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.67 E-value=1.6 Score=42.48 Aligned_cols=91 Identities=13% Similarity=-0.041 Sum_probs=41.2
Q ss_pred HHHhCCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh
Q 005966 388 GCVHNGLARKAVELFRQMLVEV---VEPNDATLNSLLPAYAI---LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK 461 (667)
Q Consensus 388 ~~~~~~~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (667)
+|....+++..+++++.|.... +.-....-.....++.+ .|+.++|.+++..+....-.+++.++..+...|-.
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD 229 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD 229 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 4555555566666665555321 00011111122223333 55666666666554444445555555555544421
Q ss_pred ---------cCCHHHHHHHHhhCCCC
Q 005966 462 ---------CGSLESAHKIFSEIPIK 478 (667)
Q Consensus 462 ---------~g~~~~A~~~~~~~~~~ 478 (667)
....++|...|.+.-+.
T Consensus 230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 230 LFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHcCccchHHHHHHHHHHHHHHcC
Confidence 11245555555554443
No 257
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=95.66 E-value=0.76 Score=41.96 Aligned_cols=60 Identities=12% Similarity=0.028 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 587 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
++......|..+|.+.+|.++.++++.++|-+...+..|..+|...|+--+|.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 445556778999999999999999999999999999999999999999999999998875
No 258
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.66 E-value=3 Score=42.55 Aligned_cols=182 Identities=12% Similarity=0.090 Sum_probs=98.0
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005966 449 VEVSTGLIDIYSKCGSLESAHKIFSEIPIKD-KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHAC 527 (667)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 527 (667)
...+...++.-.+.|+.+.+.-+|++...-- .-...|--.+.-....|+.+-|..++.+..+--++-.+.+-..-..-+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 3445555555666667776666666654411 112344444444445577777776666665543222222221112223
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCch-hHHHHHHHHHhhcCChHHHH---HHHHhC-CCCCCHHHH----HHHHHH-HHh
Q 005966 528 SHGGLLDEGLDLFNFMLENHQTCSRA-DHYTCIVDLLGRAGRLDEAY---DLIRTM-PLKPTHAVW----GALLGA-CVI 597 (667)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~----~~l~~~-~~~ 597 (667)
...|+++.|..+++.+... . |+. ..-.--+....+.|..+.+. +++... ..+-+..+. ....+. +.-
T Consensus 377 e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 4557788888888777763 2 432 22223345556677777776 444433 111122222 122222 334
Q ss_pred cCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcC
Q 005966 598 HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633 (667)
Q Consensus 598 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 633 (667)
.++.+.|..++.++.+..|++...|..+.......+
T Consensus 454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 577788888888888888887777777776665544
No 259
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=1.1 Score=39.99 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=10.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHH
Q 005966 382 WNAILAGCVHNGLARKAVELFRQ 404 (667)
Q Consensus 382 ~~~li~~~~~~~~~~~A~~~~~~ 404 (667)
|..-..+|...+++++|...+.+
T Consensus 34 yekAAvafRnAk~feKakdcLlk 56 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLK 56 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHH
Confidence 33444444444555555444443
No 260
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=4.2 Score=43.23 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=40.4
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 005966 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613 (667)
Q Consensus 559 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 613 (667)
++..++...+++.+..+.+..+.. ++..|..++..+.+.+..+.-.+...++++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 556677788888888888887644 788888899988888877666666655543
No 261
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.48 E-value=0.98 Score=37.56 Aligned_cols=126 Identities=13% Similarity=0.230 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 005966 452 STGLIDIYSKCGSLESAHKIFSEIPIKD-KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG 530 (667)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 530 (667)
...++..+...+.......+++.+...+ .+....+.++..|++.+ ..+.++.++. .++......+++.|.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3467788888889999999999887765 45668889999998764 3444445442 12334455577778888
Q ss_pred CCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhc-CChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005966 531 GLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA-GRLDEAYDLIRTMPLKPTHAVWGALLGACVI 597 (667)
Q Consensus 531 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 597 (667)
+.++++..++.++.. +...+..+... ++++.|.+++.+. .++..|..++..+..
T Consensus 83 ~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHHc
Confidence 888888888777633 33334444444 7788888877763 256677777666553
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.46 E-value=0.12 Score=40.70 Aligned_cols=90 Identities=23% Similarity=0.188 Sum_probs=59.6
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CC-CC-CH---HHHHHHHHHHHhcC
Q 005966 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PL-KP-TH---AVWGALLGACVIHG 599 (667)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p-~~---~~~~~l~~~~~~~g 599 (667)
+.+..|+.+.|++.|.+.+. ..|.....||.-..++.-+|+.++|++-+++. .. .| .. ..+..-...|+..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 35667778888888877776 44455666777777777788888887777665 11 11 11 13444445577788
Q ss_pred CHHHHHHHHHHhhccCCC
Q 005966 600 NVELGEVAAKWLFELEPE 617 (667)
Q Consensus 600 ~~~~A~~~~~~~~~~~p~ 617 (667)
+.+.|..-|+.+-+++..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 888888888877666544
No 263
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.28 E-value=0.59 Score=38.12 Aligned_cols=116 Identities=12% Similarity=0.008 Sum_probs=71.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhc
Q 005966 489 IAGYGMHGHGETAVSLFKEMVQSGVQP--NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA 566 (667)
Q Consensus 489 ~~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (667)
.....+.|++++|.+.|+.+...-..+ ....-..++.+|.+.+++++|...+++.++.+...|++. |.....+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHHHH
Confidence 344556788888888888887752211 224566677788888888888888888888766666654 44444444433
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCc
Q 005966 567 GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG 620 (667)
Q Consensus 567 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 620 (667)
...+..+.-+- ..+ +..+....|...|+++++.-|+++.
T Consensus 96 ~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 96 EQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCChh
Confidence 33222222111 111 1223456888899999999998643
No 264
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.23 E-value=5.4 Score=42.88 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=29.3
Q ss_pred cCCHHHHHHHHHHhhccC---CCCCc-hH-----HHHHHHHhhcCCchHHHHHHHHhh
Q 005966 598 HGNVELGEVAAKWLFELE---PENPG-NY-----VLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 598 ~g~~~~A~~~~~~~~~~~---p~~~~-~~-----~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
.|+..+.......+..+. |+... .| ..+.+.|...|+.++|....++..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 677766666555554432 33222 22 144556778888888888877654
No 265
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.18 E-value=0.89 Score=39.60 Aligned_cols=178 Identities=15% Similarity=0.109 Sum_probs=88.7
Q ss_pred CCHHHHHHHHhhCCCCCCC-cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 005966 463 GSLESAHKIFSEIPIKDKD-IVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541 (667)
Q Consensus 463 g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 541 (667)
|-+.-|.--|.......|+ +..||-+.--+...|+++.|.+.|+...+.+..-+-...|.-+ ++.-.|+++-|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHH
Confidence 3333344444444444454 3567777777777888888888888777754332222222222 2344577777777666
Q ss_pred HhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHH-HhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhccCCCC-
Q 005966 542 FMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLI-RTMPLKPTHAVWGALLGA-CVIHGNVELGEVAAKWLFELEPEN- 618 (667)
Q Consensus 542 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~- 618 (667)
..-......|-...|--++ ...-++.+|..-+ ++.. .-|..-|...+-. |..+=.. +..++++..-..++
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~a~~n~ 230 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE---ETLMERLKADATDNT 230 (297)
T ss_pred HHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH---HHHHHHHHhhccchH
Confidence 6555333333333332222 2334555665433 3332 2233333332222 2211111 12223332222222
Q ss_pred ------CchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 619 ------PGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 619 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
..+|+.|++.|...|+.++|..+|+-....
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 346777888888888888888888765543
No 266
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.10 E-value=4 Score=40.69 Aligned_cols=178 Identities=9% Similarity=0.038 Sum_probs=101.0
Q ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005966 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526 (667)
Q Consensus 447 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 526 (667)
.+....-+++..++..-+..-.+.+..+|..-+.+-..|..++.+|... ..++-..+|+++.+..+. |.+.-..|..-
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 3444455566666666666666666666666555666677777777766 446666777777765432 33333444444
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCC---c---hhHHHHHHHHHhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHH
Q 005966 527 CSHGGLLDEGLDLFNFMLENHQTCS---R---ADHYTCIVDLLGRAGRLDEAYDLIRTMP----LKPTHAVWGALLGACV 596 (667)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~~~~~~~~---~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~ 596 (667)
|.+ ++.+.+..+|.++... -+ | + .+.|.-+...- ..+.+..+.+..+.+ ..--...+..+-.-|.
T Consensus 142 yEk-ik~sk~a~~f~Ka~yr-fI-~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYR-FI-PRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHH-hchhhHHHHHHHHHHH-hc-chhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 444 6667777777766652 11 2 1 11333333211 344555555555542 2223334445555666
Q ss_pred hcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhh
Q 005966 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSA 631 (667)
Q Consensus 597 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 631 (667)
...++.+|++++..+++.+..|..+...++.-+..
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 77778888888887777777766666666555443
No 267
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.90 E-value=2.4 Score=37.08 Aligned_cols=130 Identities=18% Similarity=0.079 Sum_probs=78.2
Q ss_pred hHhhhcCChhhHHHhhcccC--CC-CcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchH
Q 005966 52 SLVRAYGHVSNVRILFDEMS--ER-SSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRK 128 (667)
Q Consensus 52 ~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 128 (667)
.+|...|-..-|+--|+... .| -+.+||-|.--+...|+++.|.+.|+...+. .+....+.....-++--.|+++
T Consensus 73 vlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 73 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred chhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchH
Confidence 66777777777777777642 33 3567888888888899999999999998876 3334444444444445678888
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhc--CCHHHHHH-HhcccCCCChhhHHHHHHHH
Q 005966 129 LGIALHGRVLITGFDMDTFVGNCLIAMYMNF--GEVKAARK-VFDAMWEHSVVSWNTLISGY 187 (667)
Q Consensus 129 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~-~~~~~~~~~~~~~~~li~~~ 187 (667)
.|.+-+...-... +.|++- .+..|... -++.+|.. +.++....|..-|...|-.|
T Consensus 151 LAq~d~~~fYQ~D-~~DPfR---~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~ 208 (297)
T COG4785 151 LAQDDLLAFYQDD-PNDPFR---SLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF 208 (297)
T ss_pred hhHHHHHHHHhcC-CCChHH---HHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHH
Confidence 8887776666655 333321 12233332 34455543 33344444545555544443
No 268
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.89 E-value=0.044 Score=50.68 Aligned_cols=95 Identities=13% Similarity=0.026 Sum_probs=67.8
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCH
Q 005966 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP-LK-PTHAVWGALLGACVIHGNV 601 (667)
Q Consensus 524 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~ 601 (667)
.+-|.++|.+++|+..|...+. ..+-+..++..-..+|.+..++..|..-....- +. --...|..-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 4568889999999999988876 333377778888888999888888877666542 11 1112344444555566888
Q ss_pred HHHHHHHHHhhccCCCCCc
Q 005966 602 ELGEVAAKWLFELEPENPG 620 (667)
Q Consensus 602 ~~A~~~~~~~~~~~p~~~~ 620 (667)
++|.+-++.++++.|.+..
T Consensus 182 ~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHhHHHHHhhCcccHH
Confidence 8999999999999998443
No 269
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.86 E-value=4.4 Score=42.77 Aligned_cols=251 Identities=14% Similarity=0.085 Sum_probs=143.4
Q ss_pred HHhCCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhCc----C-CHHHHHHHHHHHHHhCCCCCchHHHHHH
Q 005966 389 CVHNGLARKAVELFRQMLV-------EVVEPNDATLNSLLPAYAIL----A-DLQQAMNIHCYLIRYGFLSVVEVSTGLI 456 (667)
Q Consensus 389 ~~~~~~~~~A~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~----~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 456 (667)
+....+.+.|+.+|+...+ .| .......+-.+|.+. . +.+.|..++....+.|. |+....-..+
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~ 334 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVL 334 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 3345667777777777655 44 222334444445443 2 56677777777777763 3333322222
Q ss_pred HHHHh-cCCHHHHHHHHhhCCCCCCCcchHH-HHHHHH--HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 005966 457 DIYSK-CGSLESAHKIFSEIPIKDKDIVVWS-VIIAGY--GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGL 532 (667)
Q Consensus 457 ~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~-~l~~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 532 (667)
..... ..+...|.++|......+-....|. +++... ....+...|..++.+..+.| .|...--...+..+.. ++
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~ 412 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GR 412 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cc
Confidence 22222 2456788888888776652222222 221111 13347888999999998887 4443333333444444 77
Q ss_pred HHHHHHHHHHhHHhcCCCCchhHHHHHHHHH---h--h--cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCH
Q 005966 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLL---G--R--AGRLDEAYDLIRTMPLKPTHAVWGALLGACVIH----GNV 601 (667)
Q Consensus 533 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~---~--~--~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~ 601 (667)
++.+.-.+..+.+ .+.......-..+.... . . ..+.+.+...+.+...+-+......+...|..- .+.
T Consensus 413 ~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~ 491 (552)
T KOG1550|consen 413 YDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDP 491 (552)
T ss_pred ccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCCh
Confidence 7777666666655 33321111111111111 1 1 235667777777776566666677776665433 468
Q ss_pred HHHHHHHHHhhccCCCCCchHHHHHHHHhhc-C--CchHHHHHHHHhhhCC
Q 005966 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAV-R--RWKDAENVRDVMDEKG 649 (667)
Q Consensus 602 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~~~ 649 (667)
+.|...+.++-... +.....++.++..- | .+..|..++++..+.+
T Consensus 492 ~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 492 EKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 88999888888777 66788888887652 2 2578888888876644
No 270
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.79 E-value=0.79 Score=46.30 Aligned_cols=157 Identities=11% Similarity=0.090 Sum_probs=95.1
Q ss_pred HHHHhCCCchHHHHHHH--HhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 005966 83 KMYAQNGASHDSLKMFL--GMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFG 160 (667)
Q Consensus 83 ~~~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 160 (667)
+...-+|+++++.+..+ ++... ++ ..-.+.+++-+.+.|..+.|.++-. |+. .-.....++|
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~--i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg 332 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPN--IP--KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLG 332 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG------HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT
T ss_pred HHHHHcCChhhhhhhhhhhhhccc--CC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcC
Confidence 44555788888777765 33322 22 3447778888888888888888743 332 2345667899
Q ss_pred CHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHh
Q 005966 161 EVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAG 240 (667)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 240 (667)
+++.|.++.++.. +...|..|.....++|+++-|.+.|.+... |..++-.+.-.|+.+.-.++.+....
T Consensus 333 ~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 333 NLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp -HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999988775 667999999999999999999999887643 33444445555666666666665555
Q ss_pred cCCCcchhHHHHHHHHHHhcCCHHHHHHHHhh
Q 005966 241 GRLGKNIAAWNALVDMYVKCGSVNEARLVFDR 272 (667)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (667)
.|- ++....++.-.|++++..+++.+
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 441 33334444455666666555544
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.75 E-value=0.77 Score=45.53 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=27.5
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005966 559 IVDLLGRAGRLDEAYDLIRTM-PLKPT---HAVWGALLGACVIHGNVELGEVAAKWLF 612 (667)
Q Consensus 559 l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 612 (667)
+..++.+.|+.++|++.++++ +..|. ..+...|+.++...+.+.++..++.+.-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444444556666665555555 22221 2244555555555556655555555543
No 272
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.74 E-value=0.35 Score=43.74 Aligned_cols=97 Identities=14% Similarity=0.085 Sum_probs=72.5
Q ss_pred HHHhcccC--CCChhhHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcc-----------
Q 005966 166 RKVFDAMW--EHSVVSWNTLISGYFKN-----AYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKE----------- 227 (667)
Q Consensus 166 ~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------- 227 (667)
++.|.... ++|-.+|-..+..+... +.++-....++.|.+-|+.-|..+|..+|+.+-+..-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555554 55777888877777543 4556666678889999999999999999998755332
Q ss_pred -----hHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCC
Q 005966 228 -----IEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGS 262 (667)
Q Consensus 228 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 262 (667)
-+-+..+++.|..+|+.||..+-..|++++++.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 24567888888888888888888888888877765
No 273
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.70 E-value=0.44 Score=38.40 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhc--CCCChhHHHHHHHHH
Q 005966 211 DCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRM--SERDVVTWTSMINGY 288 (667)
Q Consensus 211 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~ 288 (667)
|..++..++.++++.|+++....+.+..-. +..+.. ...+. +..- ..|+.....+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~---------~~~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGK---------KKEGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCc---------cccCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 345666667777777776666666644332 221110 00000 1110 126777788888888
Q ss_pred HhCCChHHHHHHHHHHHhc-CCCCChhhHHHHHHHh
Q 005966 289 ALNGDVRNALGLFQLMQFE-GVRPNSLTIGSLLSAC 323 (667)
Q Consensus 289 ~~~~~~~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~ 323 (667)
+.+|++..|+++++...+. +++.+..++..|+.-+
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 8888888888888877653 5666666666666543
No 274
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.57 E-value=2.6 Score=43.30 Aligned_cols=162 Identities=12% Similarity=0.020 Sum_probs=94.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHhC----cCCHHHHHHHHHHHHHhCCCCCchH
Q 005966 382 WNAILAGCVHNGLARKAVELFRQMLVEV-VEPND-----ATLNSLLPAYAI----LADLQQAMNIHCYLIRYGFLSVVEV 451 (667)
Q Consensus 382 ~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 451 (667)
...++....-.|+-+.+++.+.+-.+.+ +.-.. .+|..++..++. ..+.+.|.++++.+.+.- |.+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~lf 269 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSALF 269 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 4445555556677777777777655432 22111 233444443333 456777888887777653 333333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC---C--CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005966 452 STGLIDIYSKCGSLESAHKIFSEIPIKD---K--DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526 (667)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 526 (667)
.-.-.+.+...|++++|.+.|++..... + ....+--+.-.+....+|++|.+.|.++.+.. .-+..+|..+..+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 3344566677888888888888655422 1 22334445566777788888888888888753 2233444444443
Q ss_pred -HhccCCH-------HHHHHHHHHhHH
Q 005966 527 -CSHGGLL-------DEGLDLFNFMLE 545 (667)
Q Consensus 527 -~~~~g~~-------~~A~~~~~~~~~ 545 (667)
+...|+. ++|.++|.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3455666 777777776643
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.46 E-value=0.06 Score=32.12 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=20.4
Q ss_pred hHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 621 NYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
++..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888999999999999888844
No 276
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.36 E-value=1.1 Score=45.37 Aligned_cols=157 Identities=13% Similarity=0.040 Sum_probs=83.6
Q ss_pred HHHhcCCHHHHHHHHh--hCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHH
Q 005966 458 IYSKCGSLESAHKIFS--EIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDE 535 (667)
Q Consensus 458 ~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~ 535 (667)
...-.++++++.++.. ++... -+....+.++.-+.+.|..+.|+.+... +.+ -.....+.|+++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~-i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPN-IPKDQGQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhccc-CChhHHHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHHH
Confidence 3444667777555443 22211 1234466666777777777777765332 211 1122345677777
Q ss_pred HHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 005966 536 GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE 615 (667)
Q Consensus 536 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 615 (667)
|.++.+.. ++...|..|.+...++|+++-|.+.+++.+ -+..|+-.|...|+.+.-.++.+.+...+
T Consensus 337 A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 76653322 455567778888888888888888877765 24455556667777766666665554443
Q ss_pred CCCCchHHHHHHHHhhcCCchHHHHHHHHh
Q 005966 616 PENPGNYVLLSKLYSAVRRWKDAENVRDVM 645 (667)
Q Consensus 616 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 645 (667)
- +.....++.-.|+.++..+++.+-
T Consensus 404 ~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2 233333455567888777777653
No 277
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.28 E-value=2.2 Score=33.98 Aligned_cols=138 Identities=16% Similarity=0.152 Sum_probs=71.9
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHH
Q 005966 391 HNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHK 470 (667)
Q Consensus 391 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 470 (667)
-.|..++..++..+...+ .+..-++.++--....-+-+...+.++.+ |-.-| ...+|++.....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFD----------is~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFD----------ISKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-----------GGG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcC----------chhhcchHHHHH
Confidence 356677777777776643 23333444433333333333333333332 21111 223455555555
Q ss_pred HHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 005966 471 IFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQT 549 (667)
Q Consensus 471 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 549 (667)
.+-.+- .+.......+..+...|+-++-.+++..+.+.+ .|++.....+..+|.+.|+..++.+++.++-+ .|.
T Consensus 78 C~~~~n---~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe-kG~ 151 (161)
T PF09205_consen 78 CYAKRN---KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE-KGL 151 (161)
T ss_dssp HHHHTT------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-
T ss_pred HHHHhc---chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-hch
Confidence 444432 244455666777788888888888888877643 67788888888888888888888888888766 444
No 278
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.06 E-value=0.082 Score=33.31 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=28.8
Q ss_pred CchHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 619 PGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 619 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
|.++..++.+|.+.|++++|++.++++.+...
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45788999999999999999999999998764
No 279
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.05 E-value=2.6 Score=36.35 Aligned_cols=114 Identities=11% Similarity=0.103 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHH-----HHHHHhhcCChHHH
Q 005966 500 TAVSLFKEMVQSGVQPNEVTFT--SALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTC-----IVDLLGRAGRLDEA 572 (667)
Q Consensus 500 ~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~A 572 (667)
+.....+++.........-.+. .+...+...|++++|..-++..... |.-+.+.. |.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4555556666543222222222 2345577888999999888877641 22222333 45667788999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 573 YDLIRTMPLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 573 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
+..++...-+. .......-...+...|+.++|+..|+++++..++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 99888864221 2223344556688889999999999999888755
No 280
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.02 E-value=2.4 Score=35.40 Aligned_cols=94 Identities=20% Similarity=0.135 Sum_probs=46.3
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005966 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP-LKPTHAVWGALLGACVIHGNVELGEV 606 (667)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~ 606 (667)
.+.++.+++..++..+.-...-.|...++ -+..+.+.|+|.+|+.+|+++. ..|....-..|+..|.....-..-..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~--~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~ 98 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLF--DGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRR 98 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHH--HHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHH
Confidence 34556666666666664422222222222 2334556677777777776663 33444444455555554433333344
Q ss_pred HHHHhhccCCCCCchHHH
Q 005966 607 AAKWLFELEPENPGNYVL 624 (667)
Q Consensus 607 ~~~~~~~~~p~~~~~~~~ 624 (667)
..+++++..++ +.+...
T Consensus 99 ~A~evle~~~d-~~a~~L 115 (160)
T PF09613_consen 99 YADEVLESGAD-PDARAL 115 (160)
T ss_pred HHHHHHhcCCC-hHHHHH
Confidence 45555555543 444433
No 281
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.93 E-value=0.82 Score=39.26 Aligned_cols=85 Identities=12% Similarity=0.124 Sum_probs=41.2
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCc-hhHHHHHHHHHh
Q 005966 491 GYGMHGHGETAVSLFKEMVQSGVQPNE-----VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSR-ADHYTCIVDLLG 564 (667)
Q Consensus 491 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 564 (667)
-+...|++++|..-|.+.++. ++|.. +.|..-..++.+.+.++.|+.-..+.++ +.|+ .....--..+|.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEAYE 179 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHHHH
Confidence 355566666666666666554 22221 1233333345555666666655555554 1121 112222234555
Q ss_pred hcCChHHHHHHHHhC
Q 005966 565 RAGRLDEAYDLIRTM 579 (667)
Q Consensus 565 ~~g~~~~A~~~~~~~ 579 (667)
+...+++|++-|+++
T Consensus 180 k~ek~eealeDyKki 194 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKI 194 (271)
T ss_pred hhhhHHHHHHHHHHH
Confidence 556666666665555
No 282
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.84 E-value=0.67 Score=42.08 Aligned_cols=110 Identities=16% Similarity=0.185 Sum_probs=71.8
Q ss_pred HHHHhhCCCCCCCcchHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC------------
Q 005966 469 HKIFSEIPIKDKDIVVWSVIIAGYGM-----HGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGG------------ 531 (667)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g------------ 531 (667)
+..|..+.....|-.+|.+.+..|.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 33444444322455666666666643 3456666677788888888888888888887765442
Q ss_pred ----CHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCCh-HHHHHHHHhC
Q 005966 532 ----LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRL-DEAYDLIRTM 579 (667)
Q Consensus 532 ----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 579 (667)
+-+=++.++++|.. +|+.||.++-..|++++.+.+.. .+..+++-.|
T Consensus 134 HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 22346778888877 88888888888888888877753 2333444334
No 283
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.83 E-value=0.11 Score=30.45 Aligned_cols=31 Identities=19% Similarity=0.094 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 587 VWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 587 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3445555566666666666666666666553
No 284
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.78 E-value=3.5 Score=45.63 Aligned_cols=80 Identities=16% Similarity=-0.005 Sum_probs=34.3
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005966 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELG 604 (667)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 604 (667)
.+|...|+|++|+.+..++.. +..--..+-..|+.-+...+++-+|-++..+....|.. .+..+++...+++|
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eA 1045 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEA 1045 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHH
Confidence 344444555555554444432 11011111234445555555555555555554333322 22233444455555
Q ss_pred HHHHHHh
Q 005966 605 EVAAKWL 611 (667)
Q Consensus 605 ~~~~~~~ 611 (667)
.++....
T Consensus 1046 lrva~~~ 1052 (1265)
T KOG1920|consen 1046 LRVASKA 1052 (1265)
T ss_pred HHHHHhc
Confidence 5554443
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.75 E-value=0.099 Score=31.15 Aligned_cols=28 Identities=14% Similarity=-0.020 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 005966 587 VWGALLGACVIHGNVELGEVAAKWLFEL 614 (667)
Q Consensus 587 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 614 (667)
+|..|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886543
No 286
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.70 E-value=0.074 Score=31.09 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=25.9
Q ss_pred chHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 620 GNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 620 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
.++..++.+|...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999987754
No 287
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.64 E-value=1 Score=37.76 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=29.1
Q ss_pred HHhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 005966 257 YVKCGSVNEARLVFDRMSER----DVVTWTSMINGYALNGDVRNALGLFQLMQFE 307 (667)
Q Consensus 257 ~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 307 (667)
+...|.+++.....+.+..+ -...-..|.-+-.+.|++.+|...|..+...
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 34556666666655555431 1223345555566777777777777776653
No 288
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.54 E-value=15 Score=41.02 Aligned_cols=174 Identities=11% Similarity=0.048 Sum_probs=95.5
Q ss_pred HHHhCCChHHHHHHHHHHHHC-----CCCCCHH--HHHHHHHHHhCcC--CHHHHHHHHHHH--HHh---CCCCCchHHH
Q 005966 388 GCVHNGLARKAVELFRQMLVE-----VVEPNDA--TLNSLLPAYAILA--DLQQAMNIHCYL--IRY---GFLSVVEVST 453 (667)
Q Consensus 388 ~~~~~~~~~~A~~~~~~m~~~-----g~~p~~~--~~~~ll~~~~~~~--~~~~a~~~~~~~--~~~---~~~~~~~~~~ 453 (667)
+-..+.++.+=+-+++++... .++.|.. -|...+......| -++++..+.++- ... -..|+...+.
T Consensus 860 Aq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k 939 (1265)
T KOG1920|consen 860 AQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQK 939 (1265)
T ss_pred HHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHH
Confidence 344456777777777666632 1112221 2333333333333 344443332210 000 0234444443
Q ss_pred HH----HHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHH
Q 005966 454 GL----IDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT--FTSALHAC 527 (667)
Q Consensus 454 ~l----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~ 527 (667)
.. .+-+...+.+++|.-+|+..-. ..-.+.+|...|+|.+|+.+..++... -+... -..|..-+
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L 1009 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGK-------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRL 1009 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhcc-------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHH
Confidence 33 3444456667777666665544 234566777777888777777766431 12222 25566777
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCC
Q 005966 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMP 580 (667)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 580 (667)
...++.-+|-++......+ | .--+..|+++..|++|+.+....+
T Consensus 1010 ~e~~kh~eAa~il~e~~sd----~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1010 VEQRKHYEAAKILLEYLSD----P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHcccchhHHHHHHHHhcC----H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 8888888888877766541 2 234567888888999998877764
No 289
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.31 E-value=4.9 Score=35.77 Aligned_cols=62 Identities=8% Similarity=-0.027 Sum_probs=32.0
Q ss_pred HHHHHHhhc-CChHHHHHHHHhCC-----CCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHhhccCCCCC
Q 005966 558 CIVDLLGRA-GRLDEAYDLIRTMP-----LKPTHAVWGALLG---ACVIHGNVELGEVAAKWLFELEPENP 619 (667)
Q Consensus 558 ~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~p~~~ 619 (667)
.+...|... .++++|+..++... ...+...-..++. .-...+++.+|+.+|+++-...-+++
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 344455443 56666666666551 1112222222222 23355778888888887766554443
No 290
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.30 E-value=14 Score=39.80 Aligned_cols=116 Identities=10% Similarity=0.032 Sum_probs=69.3
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHH
Q 005966 495 HGHGETAVSLFKEMVQSG-VQPNE--VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571 (667)
Q Consensus 495 ~~~~~~a~~~~~~m~~~~-~~p~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 571 (667)
..+.+.|..++.+..... ..+.. .....+.......+..++|...+..... ...+.......+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 456688888888775533 22222 2233343333333225666666665543 11244445555566668889988
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 005966 572 AYDLIRTMP--LKPTHAVWGALLGACVIHGNVELGEVAAKWLFE 613 (667)
Q Consensus 572 A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 613 (667)
+...+..|+ ..-...-..-+.++....|+.++|...|+++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888884 222333345566676778999999999888743
No 291
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.18 E-value=2.3 Score=42.12 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC----CCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPE----NPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 584 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
...+|..++..+++.|.++.|...+.++....+. .|.+...-++++...|+..+|+..++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4557899999999999999999999999886522 4678888899999999999999999988873
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.08 E-value=9.9 Score=37.59 Aligned_cols=34 Identities=9% Similarity=-0.074 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhc
Q 005966 599 GNVELGEVAAKWLFELEPENPGNYVLLSKLYSAV 632 (667)
Q Consensus 599 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 632 (667)
++.+.+...|+++.+..|.....+..++..+.+.
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 7889999999999999999888888888887654
No 293
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.79 E-value=7 Score=35.08 Aligned_cols=57 Identities=5% Similarity=0.049 Sum_probs=28.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCchhHHHHHHHHHhhcCChHHHHHHHH
Q 005966 520 FTSALHACSHGGLLDEGLDLFNFMLENHQT--CSRADHYTCIVDLLGRAGRLDEAYDLIR 577 (667)
Q Consensus 520 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 577 (667)
|...+-.+....++..|...++.--+..++ +-+..+...|+.+| ..|+.+++.+++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 444444555556666666666653332222 12334444555555 4555665555443
No 294
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.68 E-value=7.7 Score=35.29 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=28.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhH
Q 005966 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNE----VTFTSALHACSHGGLLDEGLDLFNFML 544 (667)
Q Consensus 489 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~ 544 (667)
..-|.+.|.+..|..-+++|++. -|+. ..+-.+..+|...|..++|...-+-+.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 34455666666666666666654 1221 234445555666666666555544443
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.68 E-value=0.13 Score=30.15 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=26.0
Q ss_pred chHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 620 GNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 620 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
.+|..+|.+|...|++++|+..+++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999988754
No 296
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.64 E-value=0.53 Score=43.61 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 005966 555 HYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFE 613 (667)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 613 (667)
++..++..+...|+++.+.+.++++ ...| +...|..++.+|...|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3445555555556666555555554 3333 555555666666666666666655555543
No 297
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.60 E-value=6.8 Score=34.91 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHhhccCCC
Q 005966 599 GNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 599 g~~~~A~~~~~~~~~~~p~ 617 (667)
.|.-.+...+++..+++|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 4444555555555555554
No 298
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.49 E-value=3.7 Score=39.03 Aligned_cols=94 Identities=14% Similarity=0.238 Sum_probs=49.3
Q ss_pred HHHHHHHhhCCCCC-----CCcchHHHHHHHHHHcCC----hHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCC--
Q 005966 466 ESAHKIFSEIPIKD-----KDIVVWSVIIAGYGMHGH----GETAVSLFKEMVQSGVQPNEV--TFTSALHACSHGGL-- 532 (667)
Q Consensus 466 ~~A~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~----~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~-- 532 (667)
.+|.++|+.|++.. ++...+..++.. ..++ .+.+..+|+.+.+.|+..+.. ....++..+.....
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 34555555555544 233344444333 2222 245667777787777665443 23333332222222
Q ss_pred HHHHHHHHHHhHHhcCCCCchhHHHHHHHH
Q 005966 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDL 562 (667)
Q Consensus 533 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 562 (667)
..++.++++.+.+ .++++....|..++-.
T Consensus 198 v~r~~~l~~~l~~-~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 198 VARVIELYNALKK-NGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHH-cCCccccccccHHHHH
Confidence 3467777777777 5777776666655443
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.41 E-value=0.77 Score=37.52 Aligned_cols=70 Identities=16% Similarity=0.084 Sum_probs=46.5
Q ss_pred hcCChHHHHHHHHhCC-CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCC
Q 005966 565 RAGRLDEAYDLIRTMP-LKPTHAVW-GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRR 634 (667)
Q Consensus 565 ~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 634 (667)
..++++++..++..+. ..|+..-. ..-...+...|++.+|.++++.+.+..+..|..-..++.++...|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 4677777777777773 45543322 2234446677788888888877777776666666677777777776
No 300
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.88 E-value=0.19 Score=27.27 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=19.1
Q ss_pred chHHHHHHHHhhcCCchHHHHHHH
Q 005966 620 GNYVLLSKLYSAVRRWKDAENVRD 643 (667)
Q Consensus 620 ~~~~~l~~~~~~~g~~~~A~~~~~ 643 (667)
.+...++.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888888888888888775
No 301
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.87 E-value=7.2 Score=33.15 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhc
Q 005966 250 WNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFE 307 (667)
Q Consensus 250 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 307 (667)
+..+++.+...|++-+|.++.+.....+...-..++.+..+.+|...-..+++-..+.
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556667777788888888877765544444555666666666666555555555443
No 302
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.80 E-value=3.9 Score=38.87 Aligned_cols=130 Identities=9% Similarity=0.082 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhC--c----CCHHHHHHHHHHHHHhCC---CCCchHHHHHHHHHHhcCCH
Q 005966 395 ARKAVELFRQMLVEVVEPNDATLNSLLPAYAI--L----ADLQQAMNIHCYLIRYGF---LSVVEVSTGLIDIYSKCGSL 465 (667)
Q Consensus 395 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 465 (667)
+++.+.+++.|.+.|++-+..+|.+....... . ....++..+++.|.+... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 35667788899999999888877764433333 2 235678889999987653 2344444444433 33333
Q ss_pred ----HHHHHHHhhCCCCC---CC-cchHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005966 466 ----ESAHKIFSEIPIKD---KD-IVVWSVIIAGYGMHGH--GETAVSLFKEMVQSGVQPNEVTFTSALHA 526 (667)
Q Consensus 466 ----~~A~~~~~~~~~~~---~~-~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 526 (667)
+.++.+|+.+...+ .| ......++........ ..++.++++.+.+.|+++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 45666777766644 22 2333333333222222 45788999999999999888776655433
No 303
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.79 E-value=12 Score=35.50 Aligned_cols=17 Identities=12% Similarity=0.094 Sum_probs=10.4
Q ss_pred hCCChHHHHHHHHHHHH
Q 005966 391 HNGLARKAVELFRQMLV 407 (667)
Q Consensus 391 ~~~~~~~A~~~~~~m~~ 407 (667)
+.|+.+.|..++.+...
T Consensus 5 ~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhCCHHHHHHHHHHhhh
Confidence 45666666666666554
No 304
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.69 E-value=0.23 Score=41.96 Aligned_cols=83 Identities=13% Similarity=0.033 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhh---cCChHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcC-
Q 005966 533 LDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR---AGRLDEAYDLIRTM--------PLKPTH-AVWGALLGACVIHG- 599 (667)
Q Consensus 533 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~--------~~~p~~-~~~~~l~~~~~~~g- 599 (667)
++.|.+..+.... ..|.|...++....++.. .....++.+++++. .+.|+. .++..+..++...+
T Consensus 7 FE~ark~aea~y~--~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYA--KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4555555555443 233445544444444432 22323333333332 345543 45666666655433
Q ss_pred ----------CHHHHHHHHHHhhccCCC
Q 005966 600 ----------NVELGEVAAKWLFELEPE 617 (667)
Q Consensus 600 ----------~~~~A~~~~~~~~~~~p~ 617 (667)
.+++|...|+++...+|+
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 245555555566666666
No 305
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.59 E-value=0.17 Score=29.21 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=19.6
Q ss_pred hHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 621 NYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
++..++.+|.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4566777777777777777777776654
No 306
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.47 E-value=0.043 Score=45.98 Aligned_cols=85 Identities=11% Similarity=0.107 Sum_probs=63.4
Q ss_pred HHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhH
Q 005966 116 IVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKE 195 (667)
Q Consensus 116 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 195 (667)
.+++.+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .....++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45677777888888888899998877677789999999999999888898888884332 334566667777777777
Q ss_pred HHHHHHHH
Q 005966 196 ALVVFDWM 203 (667)
Q Consensus 196 A~~~~~~m 203 (667)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77777664
No 307
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.12 E-value=8.3 Score=32.37 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=9.7
Q ss_pred HHhcCCHHHHHHHHhhCCCC
Q 005966 459 YSKCGSLESAHKIFSEIPIK 478 (667)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~ 478 (667)
+.+.|++.+|..+|+++...
T Consensus 54 ~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHhCCHHHHHHHHHHHhcc
Confidence 44445555555555554443
No 308
>PRK10941 hypothetical protein; Provisional
Probab=91.08 E-value=0.91 Score=42.24 Aligned_cols=62 Identities=19% Similarity=0.156 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 588 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
.+.+-.++.+.++++.|.++.+.++.+.|++|.-+.-.|-+|.+.|.+..|..-++...+.-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 45566667888888888888888888888888888888888888888888888888776654
No 309
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.98 E-value=0.66 Score=43.27 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=59.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhc-
Q 005966 489 IAGYGMHGHGETAVSLFKEMVQSGVQP-NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRA- 566 (667)
Q Consensus 489 ~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 566 (667)
..-|.+.|.+++|+..|.+.... .| |.+++..-..+|.+...+..|..-...++. .| ...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----Ld----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----LD----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----hh----HHHHHHHHHHH
Confidence 36688899999999999988774 45 888888888899999888888777766655 11 1234555554
Q ss_pred ------CChHHHHHHHHhC-CCCCCHH
Q 005966 567 ------GRLDEAYDLIRTM-PLKPTHA 586 (667)
Q Consensus 567 ------g~~~~A~~~~~~~-~~~p~~~ 586 (667)
|...+|.+-++.. .+.|...
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 4555555554443 4667643
No 310
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.81 E-value=0.41 Score=27.87 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=26.0
Q ss_pred chHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 620 GNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 620 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
.+|..++.+|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36889999999999999999999998764
No 311
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.74 E-value=7.4 Score=33.68 Aligned_cols=90 Identities=11% Similarity=-0.047 Sum_probs=66.0
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcC
Q 005966 559 IVDLLGRAGRLDEAYDLIRTMPLKPTHAVW-----GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR 633 (667)
Q Consensus 559 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 633 (667)
+...+..+|++++|..-++..-..|....+ ..|.+.....|.++.|...++...+..-. +-.-..-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA-AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH-HHHHHHhhhHHHHcC
Confidence 446678899999999999876433433333 34455677889999999887765433211 223556799999999
Q ss_pred CchHHHHHHHHhhhCC
Q 005966 634 RWKDAENVRDVMDEKG 649 (667)
Q Consensus 634 ~~~~A~~~~~~~~~~~ 649 (667)
+.++|+.-+++..+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999998876
No 312
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.73 E-value=0.45 Score=27.34 Aligned_cols=30 Identities=13% Similarity=0.024 Sum_probs=25.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 588 WGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 588 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
+..++.++.+.|++++|...++++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 455677788899999999999999998887
No 313
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.38 E-value=14 Score=33.70 Aligned_cols=258 Identities=13% Similarity=0.135 Sum_probs=144.5
Q ss_pred cCCHHHHHHHHhccCCC----C---cccHHHHHHHHHhCCChHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHhCcC
Q 005966 361 CNLVKLSFQVFARTSKK----K---TVPWNAILAGCVHNGLARKAVELFRQMLVE---VV--EPNDATLNSLLPAYAILA 428 (667)
Q Consensus 361 ~g~~~~a~~~~~~~~~~----~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~--~p~~~~~~~ll~~~~~~~ 428 (667)
..++++|+.-|.+..+- + ......++....+.+++++.++.|++|..- .+ .-+..+.++++...+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34566777766655421 1 112456788888889999999888887642 11 234456777777666666
Q ss_pred CHHHHHHHHHHHHH-----hCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----CC--------CcchHHHHHH
Q 005966 429 DLQQAMNIHCYLIR-----YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIK-----DK--------DIVVWSVIIA 490 (667)
Q Consensus 429 ~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--------~~~~~~~l~~ 490 (667)
+.+--..+++.-.+ .+-..--.+-+.|...|...|.+.+..++++++... |. -...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 65555555443221 111122234455777788788887777777665332 11 1346777788
Q ss_pred HHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH-----hccCCHHHHHHHHHHhHHh---cCCCCc--hhHHHHH
Q 005966 491 GYGMHGHGETAVSLFKEMVQSG-VQPNEVTFTSALHAC-----SHGGLLDEGLDLFNFMLEN---HQTCSR--ADHYTCI 559 (667)
Q Consensus 491 ~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~-----~~~g~~~~A~~~~~~~~~~---~~~~~~--~~~~~~l 559 (667)
.|...++-.....+|++.+... --|-+..... ++-| .+.|.+++|..-|-++.+. .|.+.. .--|..|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGv-IRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGV-IRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhH-HHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8888888888888888776522 2344444443 3434 4668898887554444332 233222 2235566
Q ss_pred HHHHhhcCChHHHHHHHHh--C---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHH
Q 005966 560 VDLLGRAGRLDEAYDLIRT--M---PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625 (667)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~--~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 625 (667)
.+++.+.|-- -|+. + +..|.......++.+|.. ++..+-+++++.-...--+||.+..++
T Consensus 279 ANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~~IM~DpFIReh~ 343 (440)
T KOG1464|consen 279 ANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKSNRSNIMDDPFIREHI 343 (440)
T ss_pred HHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhccccccHHHHHHH
Confidence 7777766521 1111 1 234455567778887764 344444444443333333445444433
No 314
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.35 E-value=0.79 Score=30.11 Aligned_cols=37 Identities=24% Similarity=0.152 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHH
Q 005966 588 WGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL 624 (667)
Q Consensus 588 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 624 (667)
+..+.-++.+.|++++|.+..+.+++.+|+|..+...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3456678889999999999999999999997665543
No 315
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.19 E-value=7.6 Score=33.73 Aligned_cols=96 Identities=9% Similarity=-0.037 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHH--HH
Q 005966 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV--TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT--CI 559 (667)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~l 559 (667)
.+..+..-|++.|+.+.|++.|.++.+....|... .+..++......+++..+.....++........|...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45556666666677777777776666654343332 345566666666677766666666554221111111111 11
Q ss_pred --HHHHhhcCChHHHHHHHHhC
Q 005966 560 --VDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 560 --~~~~~~~g~~~~A~~~~~~~ 579 (667)
+-.+...+++.+|-+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 11233466777777776665
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.13 E-value=0.64 Score=28.58 Aligned_cols=26 Identities=15% Similarity=0.012 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005966 587 VWGALLGACVIHGNVELGEVAAKWLF 612 (667)
Q Consensus 587 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 612 (667)
+++.+...|...|++++|+.++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444444555555555555554443
No 317
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.02 E-value=9.5 Score=40.36 Aligned_cols=149 Identities=17% Similarity=0.097 Sum_probs=81.8
Q ss_pred HcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHHhHHhcCCCCchhHHHHHHH
Q 005966 494 MHGHGETAVSLFKEMVQ-------SGVQPNEVTFTSALHACSHGG-----LLDEGLDLFNFMLENHQTCSRADHYTCIVD 561 (667)
Q Consensus 494 ~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 561 (667)
...+.+.|+.+|+.+.+ .| .......+..+|.+.. +.+.|..++....+ .+. |+.... +..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g~-~~a~~~--lg~ 333 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LGN-PDAQYL--LGV 333 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cCC-chHHHH--HHH
Confidence 44566666666666554 44 2223444555555432 55667777777766 343 444322 333
Q ss_pred HHhhc---CChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhc-C
Q 005966 562 LLGRA---GRLDEAYDLIRTMPLKPTHAVWGALLGACVI----HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAV-R 633 (667)
Q Consensus 562 ~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g 633 (667)
++... .+...|.++|......-....+..+...+.. ..+.+.|...++++-+.+ ++.+...++..+.-. +
T Consensus 334 ~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~ 411 (552)
T KOG1550|consen 334 LYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVG 411 (552)
T ss_pred HHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccc
Confidence 33322 3567788877777434444444444333322 236788888888887777 344444444443322 7
Q ss_pred CchHHHHHHHHhhhCCCc
Q 005966 634 RWKDAENVRDVMDEKGLR 651 (667)
Q Consensus 634 ~~~~A~~~~~~~~~~~~~ 651 (667)
+++.+.-.+..+.+.|.+
T Consensus 412 ~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGYE 429 (552)
T ss_pred cccHHHHHHHHHHHhhhh
Confidence 777777776666665543
No 318
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.98 E-value=2.4 Score=41.69 Aligned_cols=142 Identities=18% Similarity=0.145 Sum_probs=92.5
Q ss_pred HHHHHHcCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcC
Q 005966 489 IAGYGMHGHGETAVS-LFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567 (667)
Q Consensus 489 ~~~~~~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 567 (667)
|.--...|+.-.|-+ ++.-++...-.|+...+.+.+ +...|+++.+.+.+....+ -+.....+..+++...-+.|
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchh
Confidence 334456777776655 444455443456655444443 5678999999998887766 33345556778888888999
Q ss_pred ChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC-CCchHHHHHHH-HhhcCC
Q 005966 568 RLDEAYDLIRTM-P-LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE-NPGNYVLLSKL-YSAVRR 634 (667)
Q Consensus 568 ~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~-~~~~g~ 634 (667)
++++|...-..| + .-.++.+...........|-++++....++++.++|. +.+....|... |..-|+
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 999999988877 2 2224444444444556678889999999999988876 44444444332 554444
No 319
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.91 E-value=2.1 Score=39.76 Aligned_cols=77 Identities=10% Similarity=0.072 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHH-----hCCCCchHHHHH
Q 005966 77 LYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLI-----TGFDMDTFVGNC 151 (667)
Q Consensus 77 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 151 (667)
++..++..+...|+++.+.+.++.+... .+-+...|..++.++.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4555667777778888888888888876 566777788888888888888888887777665 467777766665
Q ss_pred HHHH
Q 005966 152 LIAM 155 (667)
Q Consensus 152 li~~ 155 (667)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=89.79 E-value=1.6 Score=37.99 Aligned_cols=71 Identities=18% Similarity=0.144 Sum_probs=49.6
Q ss_pred hHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC----CCchHHHHHHHHhhcCCchHHH
Q 005966 569 LDEAYDLIRTMPLKP--THAVWGALLGACVIHGNVELGEVAAKWLFELEPE----NPGNYVLLSKLYSAVRRWKDAE 639 (667)
Q Consensus 569 ~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~ 639 (667)
-++|++.|-.+.-.| +...+...+..|....|.++++.++-+++++.+. ||.++..|+.+|.+.|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 466777776664222 2233334444455577889999999999886543 5788999999999999988874
No 321
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.61 E-value=33 Score=36.90 Aligned_cols=88 Identities=15% Similarity=0.077 Sum_probs=42.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHh---
Q 005966 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG-FLSVVEVSTGLIDIYSK--- 461 (667)
Q Consensus 386 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 461 (667)
...+.-.|.++.|++.+-+ ..+...+.+.+...+..+.-.+-.+... ..+.... -.|.+--+..|+..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445567999999998877 2345666777776666554333222211 2221111 11222456677777765
Q ss_pred cCCHHHHHHHHhhCCCC
Q 005966 462 CGSLESAHKIFSEIPIK 478 (667)
Q Consensus 462 ~g~~~~A~~~~~~~~~~ 478 (667)
..+..+|.+.|--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 56788888888766553
No 322
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.49 E-value=0.57 Score=27.39 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=20.9
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHH
Q 005966 134 HGRVLITGFDMDTFVGNCLIAMYMNFGEVKAAR 166 (667)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 166 (667)
|++.++.. |-+...|+.+..+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445554 556677777777777777777764
No 323
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.39 E-value=3.3 Score=35.97 Aligned_cols=90 Identities=16% Similarity=0.054 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHhCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC--CCCch----HH
Q 005966 555 HYTCIVDLLGRAGRLDEAYDLIRTMPL---KP--THAVWGALLGACVIHGNVELGEVAAKWLFELEP--ENPGN----YV 623 (667)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~----~~ 623 (667)
.+..+++.|.+.|+.++|++.+.++.. .| -...+..+++.+...||+..+.....++...-. +|... -.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 344555556666666666666655521 11 112344555555556666666665555543221 11111 11
Q ss_pred HHHHHHhhcCCchHHHHHHHH
Q 005966 624 LLSKLYSAVRRWKDAENVRDV 644 (667)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~ 644 (667)
.-|-.+...|++.+|.+.|-.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHc
Confidence 122224445666666666544
No 324
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.36 E-value=2.5 Score=37.74 Aligned_cols=56 Identities=14% Similarity=-0.028 Sum_probs=32.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 593 GACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
.++...|++-++++.-..++...|+|..+|+.-+.+....=+.++|.+-|..+.+.
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 33444555555666666666666666666666666555555555555555555543
No 325
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.17 E-value=2 Score=38.52 Aligned_cols=64 Identities=14% Similarity=0.024 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH-------HhhccC--CC----CCchHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 587 VWGALLGACVIHGNVELGEVAAK-------WLFELE--PE----NPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 587 ~~~~l~~~~~~~g~~~~A~~~~~-------~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
.+..+.+.|...|+.+....+++ ++.+.. |. +....+.+|.++.+.|++++|.+.|.++...+-
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 45666777777777554444444 444322 22 245777899999999999999999999876553
No 326
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.06 E-value=27 Score=35.17 Aligned_cols=87 Identities=9% Similarity=0.080 Sum_probs=37.7
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHH---hhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 005966 524 LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLL---GRAGRLDEAYDLIRTM--PLKPTHAVWGALLGACVIH 598 (667)
Q Consensus 524 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~ 598 (667)
+.-+.+.|-+++|...+..+.. .-+|+...|..+|..- ..+| ..-+.++++.+ ..-.|+..|...+.--...
T Consensus 467 l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~ 543 (568)
T KOG2396|consen 467 LDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPL 543 (568)
T ss_pred HHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccC
Confidence 3333444444444444444443 2233444444444321 1122 34444444444 1224445555555444455
Q ss_pred CCHHHHHHHHHHhhc
Q 005966 599 GNVELGEVAAKWLFE 613 (667)
Q Consensus 599 g~~~~A~~~~~~~~~ 613 (667)
|..+.+-.++.++.+
T Consensus 544 g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 544 GRPENCGQIYWRAMK 558 (568)
T ss_pred CCcccccHHHHHHHH
Confidence 555555555555543
No 327
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.01 E-value=0.9 Score=40.27 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=26.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHh
Q 005966 592 LGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645 (667)
Q Consensus 592 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 645 (667)
+-.+.+..+++.+..--.+++++.|+.....+.|+..+.....+++|+..+++.
T Consensus 51 alchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 51 ALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 333444444444444444555555554444455555544444555555554444
No 328
>PRK09687 putative lyase; Provisional
Probab=88.93 E-value=21 Score=33.78 Aligned_cols=25 Identities=12% Similarity=-0.142 Sum_probs=11.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCC
Q 005966 591 LLGACVIHGNVELGEVAAKWLFELEP 616 (667)
Q Consensus 591 l~~~~~~~g~~~~A~~~~~~~~~~~p 616 (667)
.+.+....|+. +|...++++.+..|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 34444444443 45555555555444
No 329
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.50 E-value=1 Score=33.82 Aligned_cols=61 Identities=13% Similarity=-0.009 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC--CchHHHHHHHHhhcCCch-HHHHHHHH
Q 005966 584 THAVWGALLGACVIHGNVELGEVAAKWLFELEPEN--PGNYVLLSKLYSAVRRWK-DAENVRDV 644 (667)
Q Consensus 584 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-~A~~~~~~ 644 (667)
|......+...+...|+++.|.+.+-.+++.+|+. ..+-..|..++...|.-+ -+.++..+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRk 84 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRK 84 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 55666777777777788888877777777776653 556667777777777643 33334333
No 330
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.45 E-value=14 Score=31.24 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=23.0
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 005966 494 MHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN 546 (667)
Q Consensus 494 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 546 (667)
..|.+++.....+-+...+-+--...-..|.-+-.+.|++.+|.+.|..+..+
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 34444444444444333221111222333434444555555555555555543
No 331
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.23 E-value=0.72 Score=28.33 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=24.4
Q ss_pred chHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 620 GNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 620 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
.++..|+.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 36788999999999999999999998653
No 332
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.14 E-value=1.1 Score=39.23 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=48.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC
Q 005966 556 YTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENP 619 (667)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 619 (667)
.+..+..+.+.+++.+|+...+.- +.+| |......++..++-.|++++|..-++-+-++.|++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344556777888888888877654 5566 555677778888888999999888888888888754
No 333
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.50 E-value=1.1 Score=25.09 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=12.5
Q ss_pred hHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 621 NYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 621 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
++..++.+|...|++++|...+++..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444445555555555555544443
No 334
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.97 E-value=1.1 Score=28.09 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=21.3
Q ss_pred HHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 623 VLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 623 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
..|+.+|...|+.+.|+++++++.+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 457888888888888888888877644
No 335
>PRK12798 chemotaxis protein; Reviewed
Probab=86.90 E-value=34 Score=33.83 Aligned_cols=186 Identities=18% Similarity=0.219 Sum_probs=124.9
Q ss_pred cCCHHHHHHHHhhCCCCC--CCcchHHHHHHHH-HHcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCCHH
Q 005966 462 CGSLESAHKIFSEIPIKD--KDIVVWSVIIAGY-GMHGHGETAVSLFKEMVQSGVQPNEV----TFTSALHACSHGGLLD 534 (667)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~-~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~g~~~ 534 (667)
.|+.++|.+.+..+.... +....+-.|+.+- ....++.+|+++|+..+-. -|... ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 689999999998887654 4456677776654 4566899999999988763 45442 3444455567889999
Q ss_pred HHHHHHHHhHHhcCCCCchhHHHH-HHHHHhhc---CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005966 535 EGLDLFNFMLENHQTCSRADHYTC-IVDLLGRA---GRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKW 610 (667)
Q Consensus 535 ~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 610 (667)
++..+-......+...|-...|.. +...+.+. -..+.-..++..|.-.-....|..+.+.-.-.|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988887777765655555444333 33333333 33444455666664333455888888889999999999999999
Q ss_pred hhccCCCCCchHHHHHHHHh-----hcCCchHHHHHHHHhhhCCC
Q 005966 611 LFELEPENPGNYVLLSKLYS-----AVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 611 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~ 650 (667)
+..+... ...-...+.+|. -..+.++|.+.+..+....+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 9988744 344344444443 34568888888877755443
No 336
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.86 E-value=3.7 Score=30.70 Aligned_cols=54 Identities=17% Similarity=0.115 Sum_probs=39.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHH
Q 005966 572 AYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625 (667)
Q Consensus 572 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 625 (667)
++.-+-.+-.-|++.+..+.+++|++.+|+..|.++++-+...-..+...|..+
T Consensus 29 ~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 29 GLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 333344446889999999999999999999999999997765444334444433
No 337
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=86.75 E-value=12 Score=28.34 Aligned_cols=88 Identities=14% Similarity=0.199 Sum_probs=60.2
Q ss_pred cchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 005966 125 AWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWML 204 (667)
Q Consensus 125 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 204 (667)
...++|..+-+.+...+- ....+--.-++.+.+.|++++|..+.+.+.-||...|-.|-. .+.|..+....-+.+|.
T Consensus 19 HcHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred hHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 356777777777766542 233333444566788999999999999999899999987765 35666676777777776
Q ss_pred HCCCCCChHHHH
Q 005966 205 KSGVEPDCASVV 216 (667)
Q Consensus 205 ~~g~~p~~~~~~ 216 (667)
..| .|....|.
T Consensus 96 ~sg-~p~lq~Fa 106 (115)
T TIGR02508 96 ASG-DPRLQTFV 106 (115)
T ss_pred hCC-CHHHHHHH
Confidence 655 34444443
No 338
>PRK09687 putative lyase; Provisional
Probab=86.44 E-value=30 Score=32.77 Aligned_cols=146 Identities=9% Similarity=-0.024 Sum_probs=62.7
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCCh----hHHHHHHHHHHHCCCCCChHHHHHH
Q 005966 143 DMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYA----KEALVVFDWMLKSGVEPDCASVVSV 218 (667)
Q Consensus 143 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~A~~~~~~m~~~g~~p~~~~~~~l 218 (667)
.+|..+....+..+...|..+-...+..-...+|...-...+.++.+.|.. .++...+..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 445555555555555555433333333333344555555566666666653 3456666555332 3444444444
Q ss_pred HHHcccCcchHH--HHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHh
Q 005966 219 LPACGYLKEIEM--GRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYAL 290 (667)
Q Consensus 219 l~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 290 (667)
+.+++..+.... .....+.....-..++..+....+.++++.|+.+....+..-+..+|...-...+.++.+
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~ 185 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNS 185 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 444443321110 011111111111123444555555555555553322222333333444444444444443
No 339
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.41 E-value=4.4 Score=30.66 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=37.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHH
Q 005966 572 AYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLS 626 (667)
Q Consensus 572 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 626 (667)
++.-+-.+-.-|++.+..+.+++|++.+|+..|.++++-+...-.+....|..+.
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3333444467899999999999999999999999999988766655444555444
No 340
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.84 E-value=0.61 Score=43.69 Aligned_cols=118 Identities=15% Similarity=0.130 Sum_probs=66.7
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHH
Q 005966 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHA-VWGALLGACVIHGNVELG 604 (667)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A 604 (667)
....|.++.|++.|...++ ..++....|..-..++.+.+++..|++-+... .+.||.. .|..-..+-+..|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 3445667777777776665 33455555555666666666666666655554 4555443 344444455556777777
Q ss_pred HHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 605 EVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 605 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
...+..+.+++-+ +..-..|-.+.-..+..++-...+++.++
T Consensus 202 a~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 7777766666544 33444444455555555554444444443
No 341
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.52 E-value=10 Score=35.37 Aligned_cols=101 Identities=12% Similarity=0.138 Sum_probs=68.2
Q ss_pred hCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 005966 443 YGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD-----KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNE 517 (667)
Q Consensus 443 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 517 (667)
.|.+.+..+...++..-....++++++..+-++.... |+.. -.+.+.. +-.-++++++.++..=++.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irl-llky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHH-HHccChHHHHHHHhCcchhccccch
Confidence 3445555555666666666677788877776665542 1211 1222222 2334567888888888888889999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005966 518 VTFTSALHACSHGGLLDEGLDLFNFMLE 545 (667)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 545 (667)
.+++.+++.+.+.+++.+|.++...|..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999888888777665
No 342
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.35 E-value=1.9 Score=36.64 Aligned_cols=68 Identities=10% Similarity=0.007 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHhHHhc----CCCCc-hhHHHHHHHHHhhc
Q 005966 498 GETAVSLFKEMVQSGVQPNEVT---FTSALHACSHGGLLDEGLDLFNFMLENH----QTCSR-ADHYTCIVDLLGRA 566 (667)
Q Consensus 498 ~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~ 566 (667)
++.|.+.++.-...+ +.|... |...+.-+++.....++.++++....+. .+.|+ ...+.++..+|...
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 455666666654443 223333 3334444555566667777776665422 23454 35566666666543
No 343
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.32 E-value=6.9 Score=29.33 Aligned_cols=60 Identities=12% Similarity=0.196 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHH
Q 005966 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIV 560 (667)
Q Consensus 499 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 560 (667)
-++.+-+..+....+.|++......+++|.+.+++.-|.++++.++.+.+. +...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 345556666666777888888888888888888888888888877653332 333455444
No 344
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.09 E-value=20 Score=29.60 Aligned_cols=52 Identities=17% Similarity=0.021 Sum_probs=27.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 005966 427 LADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKD 479 (667)
Q Consensus 427 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 479 (667)
.++.+.+..+++.+.-.. |.....-..-.-.+...|++.+|..+|+++.+..
T Consensus 23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 455555555555554332 1112222222334566777777777777776653
No 345
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.94 E-value=7.1 Score=29.61 Aligned_cols=60 Identities=12% Similarity=0.186 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHH
Q 005966 500 TAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVD 561 (667)
Q Consensus 500 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 561 (667)
+..+-+..+....+.|++......+.+|.+.+++.-|.++++.++.+.+.. ...|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 345555666666778888888888888888888888888888887744433 225655543
No 346
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.93 E-value=28 Score=32.15 Aligned_cols=156 Identities=12% Similarity=0.057 Sum_probs=74.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHhccCCHHHHHHHHHHhHH---hcCCCCchhHHHH
Q 005966 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEV-------TFTSALHACSHGGLLDEGLDLFNFMLE---NHQTCSRADHYTC 558 (667)
Q Consensus 489 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~ 558 (667)
..-..+.+++++|+..+.++...|+..|.. +...+...|.+.|++..-.++.....+ +.-.+.......+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 334456677777888888877777655543 344456667777766654444332221 1222223334444
Q ss_pred HHHHHhh-cCChHHHHHHHHhC-C--CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhc------cCCCCCchHH
Q 005966 559 IVDLLGR-AGRLDEAYDLIRTM-P--LKPT-----HAVWGALLGACVIHGNVELGEVAAKWLFE------LEPENPGNYV 623 (667)
Q Consensus 559 l~~~~~~-~g~~~~A~~~~~~~-~--~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~ 623 (667)
|++.+.. ...++.-+.++... . .+.. ...-..++..+.+.|.+..|+....-++. -.|.-..++.
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 4444432 22333333333322 0 0000 01112344455566666666655543321 1133334455
Q ss_pred HHHHHHhhcCCchHHHHHHHH
Q 005966 624 LLSKLYSAVRRWKDAENVRDV 644 (667)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~ 644 (667)
.-..+|.+..+..++..-+..
T Consensus 170 lESKvyh~irnv~KskaSLTa 190 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLTA 190 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHHH
Confidence 555566665555555554443
No 347
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.79 E-value=48 Score=33.62 Aligned_cols=48 Identities=10% Similarity=-0.028 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC
Q 005966 532 LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 532 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (667)
+.+...++..++.+..|...-...+.-+-.-|....++++|++++...
T Consensus 184 D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~i 231 (711)
T COG1747 184 DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHI 231 (711)
T ss_pred cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence 444445555555444444333344444445555555555555555533
No 348
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.65 E-value=1.4 Score=24.50 Aligned_cols=31 Identities=19% Similarity=0.122 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 587 VWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 587 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
.+..+...+...|+++.|...++++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5677888899999999999999999988774
No 349
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.23 E-value=19 Score=37.09 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005966 517 EVTFTSALHACSHGGLLDEGLDLFNFMLE 545 (667)
Q Consensus 517 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 545 (667)
..-|..|.++....|++..|.+.|.+...
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 34455555555555555555555554443
No 350
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=84.04 E-value=0.98 Score=44.54 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=71.4
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCc-hhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcC
Q 005966 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSR-ADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHA-VWGALLGACVIHG 599 (667)
Q Consensus 523 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g 599 (667)
-+..+...+.++.|..++.++++ ..|+ +..|..-..++.+.+++-.|+.=+.++ +..|+.. .|..-..+|...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34456677888889988888887 2354 444545557778888888887665554 5666433 4444456677778
Q ss_pred CHHHHHHHHHHhhccCCCCCchHHHHHHH
Q 005966 600 NVELGEVAAKWLFELEPENPGNYVLLSKL 628 (667)
Q Consensus 600 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 628 (667)
.+.+|...+++...+.|+++.+...+-.+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 88888888888888888887776655443
No 351
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.72 E-value=50 Score=33.04 Aligned_cols=119 Identities=11% Similarity=-0.032 Sum_probs=73.8
Q ss_pred cccchHHHHH-HHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCC---CChhhHHHHHHHHHHcCChhHHHH
Q 005966 123 DLAWRKLGIA-LHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE---HSVVSWNTLISGYFKNAYAKEALV 198 (667)
Q Consensus 123 ~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~ 198 (667)
..|++..|-+ ++.-+....-.|+.....+ ..+...|+++.+...+..... ....+..++++...+.|+++.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 4566655544 4444444433454444333 345677888888888766533 355677888888888899999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCC
Q 005966 199 VFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLG 244 (667)
Q Consensus 199 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (667)
.-.-|....++. ..............|-++++...+..+...+.+
T Consensus 379 ~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 379 TAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 888887766552 223222233334556677777777777665433
No 352
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=83.56 E-value=1.2e+02 Score=37.38 Aligned_cols=276 Identities=14% Similarity=0.095 Sum_probs=144.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHhc-cCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhCcCC
Q 005966 352 TALIDMYAKCNLVKLSFQVFAR-TSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPN-DATLNSLLPAYAILAD 429 (667)
Q Consensus 352 ~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~ 429 (667)
..+...|+.-+++|....+... ...++ ...-|......|++..|...|+.+... .|+ ..+++.++......|.
T Consensus 1424 fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~ 1498 (2382)
T KOG0890|consen 1424 FLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQH 1498 (2382)
T ss_pred HHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccc
Confidence 3344466666666665555542 22222 223344455678888888888888754 444 5567777776667777
Q ss_pred HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHH--HHHHHHcCChH--HHHHHH
Q 005966 430 LQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVI--IAGYGMHGHGE--TAVSLF 505 (667)
Q Consensus 430 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~--~a~~~~ 505 (667)
++...-..+......-+.....++.=+.+-.+.++++....... . .+...|... ...+.+..+-+ .-.+..
T Consensus 1499 l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~--~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i 1573 (2382)
T KOG0890|consen 1499 LSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---D--RNIEYWSVESIGKLLLRNKKKDEIATLDLI 1573 (2382)
T ss_pred hhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---c--ccccchhHHHHHHHHHhhcccchhhHHHHH
Confidence 77666655444332212222223333344466677776666655 1 344455544 22222222211 111233
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH----------hHHhcCCCCch------hHHHHHHHHHhhcCCh
Q 005966 506 KEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNF----------MLENHQTCSRA------DHYTCIVDLLGRAGRL 569 (667)
Q Consensus 506 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~----------~~~~~~~~~~~------~~~~~l~~~~~~~g~~ 569 (667)
+.+++.-+.| +.+|+..|.+..+.++.-+ .....+..++. ..|...+ .+.+..
T Consensus 1574 ~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl---~~tq~s 1642 (2382)
T KOG0890|consen 1574 ENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRL---ERTQPS 1642 (2382)
T ss_pred HHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHH---HHhchh
Confidence 3333321111 1122222221122111111 11111222221 2222222 222222
Q ss_pred HHHHH---HHHhC----CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchH
Q 005966 570 DEAYD---LIRTM----PLKP-----THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKD 637 (667)
Q Consensus 570 ~~A~~---~~~~~----~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 637 (667)
..+.+ .+++. ...| -..+|....+.++..|.++.|....-++.+.. -|.++...++.+...|+...
T Consensus 1643 ~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~ 1720 (2382)
T KOG0890|consen 1643 FRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELN 1720 (2382)
T ss_pred HHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHH
Confidence 22222 22221 1222 23578999999999999999999998888877 35699999999999999999
Q ss_pred HHHHHHHhhhCCC
Q 005966 638 AENVRDVMDEKGL 650 (667)
Q Consensus 638 A~~~~~~~~~~~~ 650 (667)
|+.+++.-.+...
T Consensus 1721 Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1721 ALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999876553
No 353
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.36 E-value=21 Score=36.78 Aligned_cols=44 Identities=23% Similarity=0.200 Sum_probs=19.9
Q ss_pred hcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 005966 461 KCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEM 508 (667)
Q Consensus 461 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 508 (667)
+.|+++.|.++..+. .+..-|..|..+....+++..|.+.|.+.
T Consensus 649 ~lgrl~iA~~la~e~----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA----NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhh----cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 344444444444332 22334455555555555555555444443
No 354
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.53 E-value=5.6 Score=31.97 Aligned_cols=71 Identities=14% Similarity=0.048 Sum_probs=43.4
Q ss_pred CchhHHHHHHHHHhhcCC---hHHHHHHHHhC-C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCch
Q 005966 551 SRADHYTCIVDLLGRAGR---LDEAYDLIRTM-P-LKPT--HAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGN 621 (667)
Q Consensus 551 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 621 (667)
++..+-..+..++.+..+ ..+.+.++++. + ..|+ ......|.-++.+.++++.+++..+..++.+|+|..+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 555555566667766554 33445566655 2 3332 2344556666777788888888887777777775443
No 355
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=82.45 E-value=30 Score=29.52 Aligned_cols=37 Identities=8% Similarity=0.228 Sum_probs=20.6
Q ss_pred HHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHH
Q 005966 234 IHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVF 270 (667)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 270 (667)
+...+.+.+++++...+..+++.+.+.|++..-..++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll 52 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL 52 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3344444555666666666666666666655444443
No 356
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.25 E-value=5.6 Score=37.45 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=66.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHH
Q 005966 556 YTCIVDLLGRAGRLDEAYDLIRTM-P---LKP--THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629 (667)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 629 (667)
|.-=++-|.+..++..|...|.+- . -.| +.+.|+.-..+....|++..|+.-..+++..+|.+..+|+.=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 333445677788888888888775 1 223 3345666666667789999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHH
Q 005966 630 SAVRRWKDAENVRDV 644 (667)
Q Consensus 630 ~~~g~~~~A~~~~~~ 644 (667)
....++++|....+.
T Consensus 164 ~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 164 LELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888886666665554
No 357
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=81.84 E-value=21 Score=27.40 Aligned_cols=81 Identities=16% Similarity=0.155 Sum_probs=53.9
Q ss_pred ccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 005966 124 LAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWM 203 (667)
Q Consensus 124 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 203 (667)
....++|..+.+.+...+- ....+--..+..+.+.|++++|+..=.....||...|-.|-. .+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 4567888888888887763 344444455566788899999976666667788888877654 4677778888777777
Q ss_pred HHCC
Q 005966 204 LKSG 207 (667)
Q Consensus 204 ~~~g 207 (667)
...|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 6554
No 358
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=81.60 E-value=1.4 Score=36.72 Aligned_cols=84 Identities=19% Similarity=0.244 Sum_probs=55.4
Q ss_pred HHHHhhcccchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHH
Q 005966 319 LLSACSSLYYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398 (667)
Q Consensus 319 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 398 (667)
++..+.+.+..+....+++.+...+...+..+.+.++..|++.+..+...++++.... .....++..|.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666667777777777777666666777888888888888777777777773333 3345566666666776666
Q ss_pred HHHHHHH
Q 005966 399 VELFRQM 405 (667)
Q Consensus 399 ~~~~~~m 405 (667)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6666554
No 359
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.38 E-value=13 Score=34.77 Aligned_cols=100 Identities=11% Similarity=0.066 Sum_probs=53.3
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCC-CCh-----hhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHH
Q 005966 141 GFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWE-HSV-----VSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214 (667)
Q Consensus 141 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 214 (667)
|.+.+..+...++..-....++++++..+-.+.. ++. .+-.+.++.+ -.-++++++.++..=.+-|+.||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 3344444445555544555666666665544422 111 0111122222 22355567777766667777777777
Q ss_pred HHHHHHHcccCcchHHHHHHHHHHHhc
Q 005966 215 VVSVLPACGYLKEIEMGRMIHELVAGG 241 (667)
Q Consensus 215 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (667)
++.+|..+.+.+++..|..+.-.|+..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 777777776666666666555554443
No 360
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.24 E-value=84 Score=33.84 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=23.8
Q ss_pred HHhHHHHHHHhcCCHHHHHHHHhccCCCCccc
Q 005966 350 VETALIDMYAKCNLVKLSFQVFARTSKKKTVP 381 (667)
Q Consensus 350 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 381 (667)
+...|+..|...+++..|..++-...+.+...
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf~ 538 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQDKDVFD 538 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccChHHHH
Confidence 33448888888889999988888777665544
No 361
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=81.21 E-value=57 Score=31.87 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=71.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCc-------h
Q 005966 557 TCIVDLLGRAGRLDEAYDLIRTMPLKP--------THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPG-------N 621 (667)
Q Consensus 557 ~~l~~~~~~~g~~~~A~~~~~~~~~~p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~ 621 (667)
..|...+..+|+.++|..++.+.+.+. -......-++.|...+|+-.|.-+.+++....-+++. .
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 346677888999999999998875321 1112233467788899999999998888765544443 5
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHhhhCCCccC
Q 005966 622 YVLLSKLYSAVRRWKDAENVRDVMDEKGLRKA 653 (667)
Q Consensus 622 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 653 (667)
|..++....+.+.|=++-..++..-..|-.+.
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 77888888888999999999988877666555
No 362
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.17 E-value=1.5e+02 Score=36.72 Aligned_cols=105 Identities=13% Similarity=-0.004 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC--CCCCC--------HHH
Q 005966 518 VTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM--PLKPT--------HAV 587 (667)
Q Consensus 518 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--------~~~ 587 (667)
.+|....+.....|.++.|...+-.+.+ .. .|.. +--.+..+...|+-..|+.++++. ...|+ +..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e-~r-~~~i--~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKE-SR-LPEI--VLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhh-cc-cchH--HHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 5688888888889999999888777766 22 3444 445667788899999999888875 11111 222
Q ss_pred HHHHHHH--------H-HhcCC--HHHHHHHHHHhhccCCCCCchHHHHH
Q 005966 588 WGALLGA--------C-VIHGN--VELGEVAAKWLFELEPENPGNYVLLS 626 (667)
Q Consensus 588 ~~~l~~~--------~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~ 626 (667)
-+.++.. | ...|+ .+.-++.|..+.+..|.....++.++
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 2222211 2 23344 35567788889999998777777777
No 363
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=80.63 E-value=26 Score=28.98 Aligned_cols=78 Identities=10% Similarity=0.198 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhcccCC---------CChhhHHHHHHHHHHcCC-hhHHHHHHHHHHHCCCCCChHHHHH
Q 005966 148 VGNCLIAMYMNFGEVKAARKVFDAMWE---------HSVVSWNTLISGYFKNAY-AKEALVVFDWMLKSGVEPDCASVVS 217 (667)
Q Consensus 148 ~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~ 217 (667)
..|.++.-....+++...+.+++.+.. .+-.+|++++.+.+...- ---+..+|+.|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456666666666666666666665521 244567777776655444 3345566777776666777777777
Q ss_pred HHHHcccC
Q 005966 218 VLPACGYL 225 (667)
Q Consensus 218 ll~~~~~~ 225 (667)
++.+|.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77766554
No 364
>PRK10941 hypothetical protein; Provisional
Probab=80.55 E-value=10 Score=35.47 Aligned_cols=69 Identities=10% Similarity=0.039 Sum_probs=51.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHH
Q 005966 557 TCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625 (667)
Q Consensus 557 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 625 (667)
+.+-.+|.+.++++.|+.+.+.+ ...| |+.-+..-+..|.+.|....|..-++..++..|++|.+-..-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 34556777888888888888877 4555 555677777778888888888888888888888877765543
No 365
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=79.09 E-value=3.5 Score=36.48 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=29.5
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC
Q 005966 564 GRAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENP 619 (667)
Q Consensus 564 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 619 (667)
.+.++.+.|.+++.+. ...| ....|..+.....+.|+++.|.+.+++.++++|+|.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3455555555555554 3333 333455555555555556666666666666555543
No 366
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.03 E-value=1.1e+02 Score=33.71 Aligned_cols=217 Identities=17% Similarity=0.047 Sum_probs=113.5
Q ss_pred hCcCCHHHHHHHHHHHHHhCCCCCch-------HHHHHH-HHHHhcCCHHHHHHHHhhCCCCC------CCcchHHHHHH
Q 005966 425 AILADLQQAMNIHCYLIRYGFLSVVE-------VSTGLI-DIYSKCGSLESAHKIFSEIPIKD------KDIVVWSVIIA 490 (667)
Q Consensus 425 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~l~~ 490 (667)
....++.+|..+..++...-..|+.. .++.|- ......|+++.|.++-+.....- +..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44667777777777765433232211 222221 12334678888877766544332 45667777888
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHH--HHHhccCC--HHHHHHHHHHhHHhcCCCCc-----hhHHHH
Q 005966 491 GYGMHGHGETAVSLFKEMVQSGVQPNEVT---FTSAL--HACSHGGL--LDEGLDLFNFMLENHQTCSR-----ADHYTC 558 (667)
Q Consensus 491 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll--~~~~~~g~--~~~A~~~~~~~~~~~~~~~~-----~~~~~~ 558 (667)
+..-.|++++|..+..+..+..-.-+... |..+. ..+...|+ +.+....|......+..... ..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88888999999888877665322223322 22222 23556673 33344444444432222111 123333
Q ss_pred HHHHHhhcCChHHHHHHHHhC-----CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC-CchHH----H
Q 005966 559 IVDLLGRAGRLDEAYDLIRTM-----PLKPTHA----VWGALLGACVIHGNVELGEVAAKWLFELEPEN-PGNYV----L 624 (667)
Q Consensus 559 l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~----~ 624 (667)
+..++.+ ++.+..-.... ...|.+. .+..++......||.++|...+..+..+.-.. +.++. .
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 33333222221 1222222 12356667778899999999888776543221 22211 2
Q ss_pred HH--HHHhhcCCchHHHHHHHH
Q 005966 625 LS--KLYSAVRRWKDAENVRDV 644 (667)
Q Consensus 625 l~--~~~~~~g~~~~A~~~~~~ 644 (667)
++ ......|+.++|...+.+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 22 223467888888887766
No 367
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=78.94 E-value=5.4 Score=30.25 Aligned_cols=53 Identities=11% Similarity=0.104 Sum_probs=37.3
Q ss_pred HHhcCCHHHHHHHHHHhhccCCCC---------CchHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 595 CVIHGNVELGEVAAKWLFELEPEN---------PGNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 595 ~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
..+.||+..|.+.+.+.+...... ..+...++.++...|++++|...+++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456788888877777776543221 12445678888889999999999888754
No 368
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.85 E-value=1e+02 Score=33.32 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=15.7
Q ss_pred HhhcCChHHHHHHHHhCCCCC
Q 005966 563 LGRAGRLDEAYDLIRTMPLKP 583 (667)
Q Consensus 563 ~~~~g~~~~A~~~~~~~~~~p 583 (667)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 457899999999999998777
No 369
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=78.70 E-value=63 Score=30.87 Aligned_cols=77 Identities=16% Similarity=-0.126 Sum_probs=39.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcC-------------
Q 005966 571 EAYDLIRTMPLKPTHAVWGALLGACVI----HGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVR------------- 633 (667)
Q Consensus 571 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 633 (667)
.|...+.++...-++.....+...|.. ..|.++|...|+++-+.+. ......++ ++...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 455555554222233333334333322 2366677777777666655 44555555 444444
Q ss_pred --CchHHHHHHHHhhhCCC
Q 005966 634 --RWKDAENVRDVMDEKGL 650 (667)
Q Consensus 634 --~~~~A~~~~~~~~~~~~ 650 (667)
+...|...+......+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 56666666666655554
No 370
>PRK11619 lytic murein transglycosylase; Provisional
Probab=78.01 E-value=1.1e+02 Score=33.23 Aligned_cols=80 Identities=10% Similarity=-0.130 Sum_probs=43.0
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccC---CCCCchHHHHHHHHhhcCCch
Q 005966 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELE---PENPGNYVLLSKLYSAVRRWK 636 (667)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 636 (667)
+..+...|....|...+..+....+......+.....+.|..+.++....+....+ -.-|..|......+.+.-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 34555667777777766665333455555556666667777777776665432211 011223444444444444444
Q ss_pred HHH
Q 005966 637 DAE 639 (667)
Q Consensus 637 ~A~ 639 (667)
.+.
T Consensus 494 ~~l 496 (644)
T PRK11619 494 QSY 496 (644)
T ss_pred HHH
Confidence 444
No 371
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.31 E-value=29 Score=30.47 Aligned_cols=73 Identities=8% Similarity=0.037 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc--CCCCchhHHHHHHHHHhhcCChHHH
Q 005966 499 ETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH--QTCSRADHYTCIVDLLGRAGRLDEA 572 (667)
Q Consensus 499 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 572 (667)
+.|.+.|-++...+.--++.....| ..|....+.+++.+++.++.+.. +..+|++.+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aL-AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYAL-ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4455555555444422222222222 22333445555555555554421 1134445555555555555555544
No 372
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=76.36 E-value=8.2 Score=39.33 Aligned_cols=101 Identities=14% Similarity=0.009 Sum_probs=63.8
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 005966 528 SHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-P-LKPTHAVWGALLGACVIHGNVELGE 605 (667)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~ 605 (667)
...|+...|...+..+........++. .-.|...+.+.|...+|-.++... . ....+.++..+.+++....+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~-~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVP-LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhccc-HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 345777777777776654333333332 334556666666777776665543 2 2234456667777777778888888
Q ss_pred HHHHHhhccCCCCCchHHHHHHHH
Q 005966 606 VAAKWLFELEPENPGNYVLLSKLY 629 (667)
Q Consensus 606 ~~~~~~~~~~p~~~~~~~~l~~~~ 629 (667)
+.+++++++.|.++.+-..|..+-
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHH
Confidence 888888888888777766665443
No 373
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=76.19 E-value=4.5 Score=22.80 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHhhccCCCCCchHHHHHHH
Q 005966 599 GNVELGEVAAKWLFELEPENPGNYVLLSKL 628 (667)
Q Consensus 599 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 628 (667)
|+.+.|..++++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888899999998888888887776643
No 374
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.13 E-value=32 Score=26.14 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005966 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306 (667)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 306 (667)
..++|..+-+.+...+-. ...+--.-+..+.+.|++++|..+.+...-||...|-++-.. +.|-.++...-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 344555555554444321 222333344567788999999999999988999988777643 66777777777777766
Q ss_pred cCCCCChhhH
Q 005966 307 EGVRPNSLTI 316 (667)
Q Consensus 307 ~~~~p~~~t~ 316 (667)
+|- |...+|
T Consensus 97 sg~-p~lq~F 105 (115)
T TIGR02508 97 SGD-PRLQTF 105 (115)
T ss_pred CCC-HHHHHH
Confidence 653 433333
No 375
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=74.84 E-value=55 Score=32.69 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=27.3
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhc--cCCHHHHHHHHHHhHH
Q 005966 493 GMHGHGETAVSLFKEMVQSGVQPNEV--TFTSALHACSH--GGLLDEGLDLFNFMLE 545 (667)
Q Consensus 493 ~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~--~g~~~~A~~~~~~~~~ 545 (667)
...+++..|.++++.+.+. ++++.. .+..+..+|.. .-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556666666666666654 333333 33444444432 3455566666665554
No 376
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.06 E-value=82 Score=29.47 Aligned_cols=106 Identities=13% Similarity=-0.047 Sum_probs=48.3
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHH----HhcCCCCChhhHHHHHHHhhcccchH-HHH
Q 005966 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLM----QFEGVRPNSLTIGSLLSACSSLYYLK-RGR 333 (667)
Q Consensus 259 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~ 333 (667)
+.+++++|.+++.. -...+.+.|+..-|-++-.-| .+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666665533 123344555544444433332 23455555555444444433322111 122
Q ss_pred HHHHHHHH---hc--CCCCchHHhHHHHHHHhcCCHHHHHHHHhccC
Q 005966 334 SLHAWTIK---QN--LECEVIVETALIDMYAKCNLVKLSFQVFARTS 375 (667)
Q Consensus 334 ~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 375 (667)
.+.+.+++ .+ ..-++.....+...|.+.|++.+|+..|-.-.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~ 117 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT 117 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 22222222 22 23456777888888889998888887765443
No 377
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=72.79 E-value=73 Score=34.00 Aligned_cols=46 Identities=28% Similarity=0.473 Sum_probs=29.5
Q ss_pred HHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 562 LLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
.+.+.|..++-.++++-. ..+.+-.-.+|+.+|++..+++++++|.
T Consensus 353 LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 353 LLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred HhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 445666665555544321 2334445667888888888888888877
No 378
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.63 E-value=1.7e+02 Score=32.78 Aligned_cols=376 Identities=13% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHH----HHhcCCHHHHHHHHhhcCC-------------CC
Q 005966 215 VVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDM----YVKCGSVNEARLVFDRMSE-------------RD 277 (667)
Q Consensus 215 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~-------------~~ 277 (667)
+..-+..+-....+++|..+-+.....+......+...-+.- +...|++++|.+.|.++.. |+
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d~~~vi~lfP~l~p~ 389 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEIDPRHVISLFPDLLPS 389 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccChHHHHHhchhhcCC
Q ss_pred hh---HHHHHHHHHHhCCCh----------HHHHHHHHHHHhcCCCCChhhHH-------HHHHHhhcccchHHHHHHHH
Q 005966 278 VV---TWTSMINGYALNGDV----------RNALGLFQLMQFEGVRPNSLTIG-------SLLSACSSLYYLKRGRSLHA 337 (667)
Q Consensus 278 ~~---~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~p~~~t~~-------~ll~~~~~~~~~~~a~~~~~ 337 (667)
.. .++..+. .....+ .....+.+.-.+..-..+..-.. ..............+..+=.
T Consensus 390 ~~~~~~~~~~vp--~~~~~~~~~~~v~a~l~~~~ylt~~r~~~~~~l~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~IDt 467 (877)
T KOG2063|consen 390 ENSSIEFTGVVP--IRAPELRGGDLVPAVLALIVYLTQSRREENKKLNKYKMLYMNYFKNTLISELLKSDLNDILELIDT 467 (877)
T ss_pred cccccceeeecc--CchhhhccCcccchhhhhhhHhHHHHHHHHHHHHHhhhhHHhhhhccCcchhhccchHHHHHHHHH
Q ss_pred HHHHhcCCCCchHHhHHHHHHHhcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHH---CCCCCCH
Q 005966 338 WTIKQNLECEVIVETALIDMYAKCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLV---EVVEPND 414 (667)
Q Consensus 338 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~g~~p~~ 414 (667)
.+.+--..-++..-..++..=...-.+++...++.+... |..|+..|...|..++|+++|.+..+ ....--.
T Consensus 468 tLlk~Yl~~n~~~v~~llrlen~~c~vee~e~~L~k~~~-----y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~ 542 (877)
T KOG2063|consen 468 TLLKCYLETNPGLVGPLLRLENNHCDVEEIETVLKKSKK-----YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQL 542 (877)
T ss_pred HHHHHHHhcCchhhhhhhhccCCCcchHHHHHHHHhccc-----HHHHHHHHHhccchHHHHHHHHHHhccccccccchh
Q ss_pred HHHHHHHHHHhCcCCH--HHHHHHHHHHHHhCCCCCchHHHH------------HHHHHHhcCCHHHHHHHHhhCCCCC-
Q 005966 415 ATLNSLLPAYAILADL--QQAMNIHCYLIRYGFLSVVEVSTG------------LIDIYSKCGSLESAHKIFSEIPIKD- 479 (667)
Q Consensus 415 ~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~~~~- 479 (667)
..+..++.-+.+.+.. +-..+.-+...+....-...+++. .+-.|......+-+...++.+....
T Consensus 543 ~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~ 622 (877)
T KOG2063|consen 543 DGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNR 622 (877)
T ss_pred hhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcc
Q ss_pred -CCcchHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHH
Q 005966 480 -KDIVVWSVIIAGYGMHGH-GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYT 557 (667)
Q Consensus 480 -~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 557 (667)
++....+.++..|+..=+ ......--++..+.+ +..-+..+....+.=....+++.. |....|.
T Consensus 623 ~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~-------~rekl~~~l~~s~~Y~p~~~L~~~-------~~~~l~e 688 (877)
T KOG2063|consen 623 LTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETT-------VREKLLDFLESSDLYDPQLLLERL-------NGDELYE 688 (877)
T ss_pred ccchHHHHHHHHHHHHHHhhccCchhccccchhhh-------HHHHHHHHhhhhcccCcchhhhhc-------cchhHHH
Q ss_pred HHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHH
Q 005966 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLY 629 (667)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 629 (667)
-..-.+.|.|+.++|+.++-. ..+|++.|........+..+.+...|..+..+|
T Consensus 689 e~aill~rl~khe~aL~Iyv~------------------~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~ 742 (877)
T KOG2063|consen 689 ERAILLGRLGKHEEALHIYVH------------------ELDDIDAAESYCLPQYESDKTNKEIYLTLLRIY 742 (877)
T ss_pred HHHHHHhhhhhHHHHHHHHHH------------------HhcchhHHHHHHHHhccCCCcccHHHHHHHHHH
No 379
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=72.39 E-value=1.1e+02 Score=30.44 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=41.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccCCC-CCchHHHHHHHHh-hcCCchHHHHHHHHhhh
Q 005966 592 LGACVIHGNVELGEVAAKWLFELEPE-NPGNYVLLSKLYS-AVRRWKDAENVRDVMDE 647 (667)
Q Consensus 592 ~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 647 (667)
+....+.|-+..|.++.+-++.++|+ ||-.....++.|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44566788888888888888888888 8877777777766 56677766666666543
No 380
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.15 E-value=7 Score=24.48 Aligned_cols=28 Identities=21% Similarity=0.480 Sum_probs=23.9
Q ss_pred HHHHHHhhccCChhhHhHHHHHHHHhCC
Q 005966 17 IKLVQQYAATKSIAGTKQLHAFIITSGP 44 (667)
Q Consensus 17 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 44 (667)
..++++|...|+.+.|+.+.+.++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4689999999999999999999986543
No 381
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=71.36 E-value=38 Score=25.39 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=24.6
Q ss_pred HHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 606 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
..+++.++.+|+|+...+.++..+...|++++|++.+-.+.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3445555566666666666666666666666666665555544
No 382
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.03 E-value=19 Score=36.88 Aligned_cols=132 Identities=14% Similarity=0.045 Sum_probs=94.3
Q ss_pred CCCHHHHHHHHHHHhcc--CCHHHHHHHHHHhHHhcCCCCchhHHHH--HHHHHh-hcCChHHHHHHHHhC-CCCCC--H
Q 005966 514 QPNEVTFTSALHACSHG--GLLDEGLDLFNFMLENHQTCSRADHYTC--IVDLLG-RAGRLDEAYDLIRTM-PLKPT--H 585 (667)
Q Consensus 514 ~p~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~--l~~~~~-~~g~~~~A~~~~~~~-~~~p~--~ 585 (667)
-|+..+..+++.-.... ..-+-+-.++-.|.+ |+...|.. +...|- ..|+...|...+..+ ..+|- .
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-----~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~ 642 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-----PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD 642 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-----CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhc
Confidence 46666666655443322 233445556666654 33333332 233444 478999999988876 45553 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCC
Q 005966 586 AVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGL 650 (667)
Q Consensus 586 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 650 (667)
+.+..|.....+.|-.-.|-.++.+.+.+.-..|-.++.++.+|....+.+.|++.|++..+...
T Consensus 643 v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 643 VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 35667888888889989999999999999888899999999999999999999999999877653
No 383
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=70.90 E-value=60 Score=26.94 Aligned_cols=77 Identities=9% Similarity=0.156 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---------CChhHHHHHHHHHHhCCC-hHHHHHHHHHHHhcCCCCChhhHHHH
Q 005966 250 WNALVDMYVKCGSVNEARLVFDRMSE---------RDVVTWTSMINGYALNGD-VRNALGLFQLMQFEGVRPNSLTIGSL 319 (667)
Q Consensus 250 ~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~t~~~l 319 (667)
.+.++.-....+.+.....+++.+.. .+...|++++.+..+... ---+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34444444444555555555554432 355678888888766655 44566778888877788888888888
Q ss_pred HHHhhcc
Q 005966 320 LSACSSL 326 (667)
Q Consensus 320 l~~~~~~ 326 (667)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 8887665
No 384
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=69.75 E-value=8.7 Score=35.66 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=21.2
Q ss_pred hcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHH
Q 005966 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642 (667)
Q Consensus 597 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 642 (667)
+.|+.|+|..+|+.++.+.|++|.++..++.......+.-+|-.++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhh
Confidence 3444444444444444444444444444444444444444444433
No 385
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=69.45 E-value=9.2 Score=38.10 Aligned_cols=105 Identities=13% Similarity=0.051 Sum_probs=74.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcC
Q 005966 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSA-LHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAG 567 (667)
Q Consensus 489 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 567 (667)
+..+...++++.|..++.+.++. .||...|... ..++.+.+++..|+.=+..+++.. +.....|---+.++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 44566778899999999999985 6777655443 377889999999998888887722 222333434455666778
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 005966 568 RLDEAYDLIRTM-PLKPTHAVWGALLGACVI 597 (667)
Q Consensus 568 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~ 597 (667)
++.+|+..|+.. ...|+..-....+.-|-.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 889999888887 577877666656555543
No 386
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=69.34 E-value=65 Score=29.98 Aligned_cols=87 Identities=8% Similarity=0.063 Sum_probs=48.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHh----
Q 005966 386 LAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSK---- 461 (667)
Q Consensus 386 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 461 (667)
|.+++..+++.+++.+.-+--+.--+.-......-|-.|.+.+....+.++-.......-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5566666777776665554433221222223333344466777777666666665554333444446666655543
Q ss_pred -cCCHHHHHHHH
Q 005966 462 -CGSLESAHKIF 472 (667)
Q Consensus 462 -~g~~~~A~~~~ 472 (667)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 57777777776
No 387
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.25 E-value=5.5 Score=37.66 Aligned_cols=87 Identities=13% Similarity=0.237 Sum_probs=51.6
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHH
Q 005966 565 RAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVR 642 (667)
Q Consensus 565 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 642 (667)
..|.+++|++.+... ...| ....+..-..++.+.+....|++-+..+++++||...-|-.-+.+....|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 455566666666655 3333 33344444555666666666666666666666666666666666666666666666666
Q ss_pred HHhhhCCCc
Q 005966 643 DVMDEKGLR 651 (667)
Q Consensus 643 ~~~~~~~~~ 651 (667)
....+.++.
T Consensus 206 ~~a~kld~d 214 (377)
T KOG1308|consen 206 ALACKLDYD 214 (377)
T ss_pred HHHHhcccc
Confidence 666555543
No 388
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=69.07 E-value=18 Score=29.92 Aligned_cols=65 Identities=12% Similarity=0.030 Sum_probs=47.3
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCch
Q 005966 569 LDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWK 636 (667)
Q Consensus 569 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 636 (667)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|+|..+....+++|.+.|.-.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 455666666664 33445556666788999999999999999999999999999999988877543
No 389
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=68.90 E-value=12 Score=24.65 Aligned_cols=33 Identities=6% Similarity=-0.052 Sum_probs=27.8
Q ss_pred hHHHHHHHHhhccCChhhHhHHHHHHHHhCCCc
Q 005966 14 HLVIKLVQQYAATKSIAGTKQLHAFIITSGPLF 46 (667)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 46 (667)
..++.++-++.++|++..|++..+.+++..|++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 356778889999999999999999999999987
No 390
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.48 E-value=14 Score=26.54 Aligned_cols=45 Identities=4% Similarity=0.012 Sum_probs=33.3
Q ss_pred hcCCHHHHHHHHHHhhccCCCCCchHH---HHHHHHhhcCCchHHHHH
Q 005966 597 IHGNVELGEVAAKWLFELEPENPGNYV---LLSKLYSAVRRWKDAENV 641 (667)
Q Consensus 597 ~~g~~~~A~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~ 641 (667)
.+.+.+.|+...+++++..++.+.-+. .|+.+|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888887777655444 455667778888887775
No 391
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.47 E-value=1.4e+02 Score=30.30 Aligned_cols=46 Identities=11% Similarity=-0.051 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhc
Q 005966 587 VWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAV 632 (667)
Q Consensus 587 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 632 (667)
+.....-.+...|+.-.|.+.|.++....-.+|..|..|+.+|...
T Consensus 337 ilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 337 ILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3344556678889999999999998888877888999999988754
No 392
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.39 E-value=89 Score=27.95 Aligned_cols=127 Identities=16% Similarity=0.113 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh-cCCCCchhHHHHHHHH
Q 005966 484 VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLEN-HQTCSRADHYTCIVDL 562 (667)
Q Consensus 484 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~ 562 (667)
+.+..++.+.+.+...+++...++-++.+ +.|.-+-..++..++-.|+|++|..-++..-.. ....+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556677778888888888888777763 335556677888888899999988777765441 1222334455555543
Q ss_pred HhhcCChHHHHH-HHHhC--C---CCCCHHHHHHHH-HH--HHhcCCHHHHHHHHHHhhccCCCCC
Q 005966 563 LGRAGRLDEAYD-LIRTM--P---LKPTHAVWGALL-GA--CVIHGNVELGEVAAKWLFELEPENP 619 (667)
Q Consensus 563 ~~~~g~~~~A~~-~~~~~--~---~~p~~~~~~~l~-~~--~~~~g~~~~A~~~~~~~~~~~p~~~ 619 (667)
- .+.. +|.-- + -.|.+ .|...+ .+ |..-|.-+.....-+++++..|.-+
T Consensus 82 e-------a~R~evfag~~~Pgflg~p~p-~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 82 E-------AARNEVFAGGAVPGFLGGPSP-EWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred H-------HHHHHHhccCCCCCCcCCCCH-HHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 2 2222 23221 1 11233 333333 33 2333455666777778888777743
No 393
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=67.64 E-value=26 Score=27.89 Aligned_cols=55 Identities=15% Similarity=0.087 Sum_probs=40.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHH
Q 005966 571 EAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625 (667)
Q Consensus 571 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 625 (667)
+++.-+-.+.+-|++.....-+++|++-+|+..|.++++-+...-+..-.+|..+
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3444444456889999999999999999999999999998876555534444433
No 394
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.40 E-value=15 Score=26.46 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=18.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhccCCHHHHHH
Q 005966 496 GHGETAVSLFKEMVQSGVQPNE--VTFTSALHACSHGGLLDEGLD 538 (667)
Q Consensus 496 ~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~A~~ 538 (667)
.+.++|+..|.+.++.-..|.. .++..++.+|+..|++.++++
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555554443222111 234444455555555544443
No 395
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.61 E-value=2e+02 Score=31.27 Aligned_cols=75 Identities=13% Similarity=0.149 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhc
Q 005966 248 AAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSS 325 (667)
Q Consensus 248 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 325 (667)
.+....++.+...|++++|-...-.|...+..-|...+..+...+.......++ .....+.+...|..+|..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 355667777777888888888777777777777777666666666554433221 111112344556566655544
No 396
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=66.50 E-value=48 Score=26.96 Aligned_cols=68 Identities=18% Similarity=0.080 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhc-cCCC-CCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 582 KPTHAVWGALLGACVIHG---NVELGEVAAKWLFE-LEPE-NPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 582 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
.++..+-..+.++..+.. |..+.+.+++.+++ -.|+ .....+.|+-.+++.|+|++++.+.+.+.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 445555555566655543 34555666666664 3333 23455556666666666666666666655443
No 397
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.01 E-value=1.4e+02 Score=29.47 Aligned_cols=61 Identities=20% Similarity=0.157 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCCC----CCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005966 450 EVSTGLIDIYSKCGSLESAHKIFSEIPIKD----KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510 (667)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 510 (667)
..+.-+.+-|..+|+++.|.+.|.+...-- .-+..|..+|..-.-.|+|.....+..+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 456667777888888888888887743311 1122344445555556666666666655554
No 398
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=65.16 E-value=38 Score=26.47 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 005966 382 WNAILAGCVHNGLARKAVELFRQMLV 407 (667)
Q Consensus 382 ~~~li~~~~~~~~~~~A~~~~~~m~~ 407 (667)
|..++..|...|..++|++++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 78888888888888888888888776
No 399
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=64.04 E-value=2.7e+02 Score=31.93 Aligned_cols=184 Identities=9% Similarity=-0.080 Sum_probs=86.7
Q ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005966 447 SVVEVSTGLIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHA 526 (667)
Q Consensus 447 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 526 (667)
+++.+-...++.+...+..+ ...+...+.. +|...-...+.++.+.+..+. +..... .++...-.....+
T Consensus 696 ~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D--~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~a 765 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAGD-AALFAAALGD--PDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKG 765 (897)
T ss_pred CCHHHHHHHHHHHHhhccCC-HHHHHHHhcC--CCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHH
Confidence 34444444555554432111 1223333333 555555555555555544321 122221 3455555555555
Q ss_pred HhccCCHHH-HHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005966 527 CSHGGLLDE-GLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605 (667)
Q Consensus 527 ~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 605 (667)
+...+..+. +...+..+.+ .++...-...+..+...|..+.+...+..+-..++..+-...+.++...+. +++.
T Consensus 766 L~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~ 840 (897)
T PRK13800 766 LATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAV 840 (897)
T ss_pred HHHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchH
Confidence 555554332 2333334333 145555666666777766655444444444334565555556666665554 2344
Q ss_pred HHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 606 VAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 606 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
..+..+++ +| ++.+...-+.++.+.+....+...+..+.+
T Consensus 841 ~~L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 841 PALVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 44444442 22 244555555555554333455555555444
No 400
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.59 E-value=1.1e+02 Score=31.71 Aligned_cols=49 Identities=18% Similarity=0.063 Sum_probs=23.4
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCH------------HHHHHHHHHHhccCCHHHHHHHHHHh
Q 005966 494 MHGHGETAVSLFKEMVQSGVQPNE------------VTFTSALHACSHGGLLDEGLDLFNFM 543 (667)
Q Consensus 494 ~~~~~~~a~~~~~~m~~~~~~p~~------------~~~~~ll~~~~~~g~~~~A~~~~~~~ 543 (667)
....+++|...|.-.+... .|+. .+...+...|...|+.+-|..+.++.
T Consensus 250 hs~sYeqaq~~F~~av~~~-d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~ 310 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVH-DPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERG 310 (665)
T ss_pred cchHHHHHHHHHHHHHhhc-CCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 3344556666655555431 2222 12333444455556655555555543
No 401
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=63.47 E-value=25 Score=32.50 Aligned_cols=59 Identities=22% Similarity=0.185 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhC
Q 005966 590 ALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 590 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
.+-.++...++++.|.+..++.+.++|++|.-..--|-+|.+.|-+.-|++-++...+.
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 34445777788888888888888888888877777888888888888888887775543
No 402
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=62.90 E-value=48 Score=30.78 Aligned_cols=87 Identities=9% Similarity=0.071 Sum_probs=47.5
Q ss_pred HHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----
Q 005966 82 MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYM---- 157 (667)
Q Consensus 82 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---- 157 (667)
|++++..++|.+++...-+.-+. .-+........-|-.|.+.+....+.++-...+...-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~-pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQV-PEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcC-cccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 67788888888777755555432 1111223334444455666666666666655554432223333555554444
Q ss_pred -hcCCHHHHHHHh
Q 005966 158 -NFGEVKAARKVF 169 (667)
Q Consensus 158 -~~g~~~~A~~~~ 169 (667)
-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 347777776665
No 403
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=62.44 E-value=26 Score=20.81 Aligned_cols=17 Identities=12% Similarity=-0.095 Sum_probs=7.1
Q ss_pred HHHHHHhcCCHHHHHHH
Q 005966 591 LLGACVIHGNVELGEVA 607 (667)
Q Consensus 591 l~~~~~~~g~~~~A~~~ 607 (667)
+...+...|++++|+.+
T Consensus 7 ~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 7 LAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHH
Confidence 33334444444444444
No 404
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=62.15 E-value=13 Score=33.06 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=38.5
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 005966 527 CSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKPT 584 (667)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 584 (667)
..+.++.+.|.+++.++.+ ..+.....|.-+...-.+.|+++.|.+.+++. ++.|+
T Consensus 5 ~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3456777777777777766 44445666777777777777877777777765 55554
No 405
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=61.56 E-value=43 Score=31.26 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005966 453 TGLIDIYSKCGSLESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQ 510 (667)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 510 (667)
......|..+|.+.+|.++.++....+| +...|-.++..+...|+--.+.+-++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445667777777777777777766553 556677777777777777777766666543
No 406
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=61.32 E-value=58 Score=32.53 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh-------c-cCCCCCchHHHHHHHHhhcCCchHHHHHHHHhh
Q 005966 590 ALLGACVIHGNVELGEVAAKWLF-------E-LEPENPGNYVLLSKLYSAVRRWKDAENVRDVMD 646 (667)
Q Consensus 590 ~l~~~~~~~g~~~~A~~~~~~~~-------~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 646 (667)
.|++..+-.||+..|+++++.+- . .-+-+...++.+|-+|...++|.+|++.|....
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666655431 1 112245667777777777777777777776653
No 407
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=61.17 E-value=15 Score=34.36 Aligned_cols=78 Identities=8% Similarity=0.044 Sum_probs=50.0
Q ss_pred CCCchhHHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH-HHHHhcCCHHHHHHHHHHhhccCCCCCchHHHH
Q 005966 549 TCSRADHYTCIVDLLGRAGRLDEAYDLIRTM-PLKP-THAVWGALL-GACVIHGNVELGEVAAKWLFELEPENPGNYVLL 625 (667)
Q Consensus 549 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 625 (667)
+..|+..|...+.-..+.|.+.+.-.++.+. ...| |...|-... .-+...++++.+..++.+.++++|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 4445555655555444555666666666555 3444 444553322 225567899999999999999999999887754
Q ss_pred H
Q 005966 626 S 626 (667)
Q Consensus 626 ~ 626 (667)
.
T Consensus 183 f 183 (435)
T COG5191 183 F 183 (435)
T ss_pred H
Confidence 3
No 408
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=61.01 E-value=16 Score=21.98 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=23.6
Q ss_pred chHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 620 GNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 620 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
.+|..|+.+-...+++++|.+-|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4788899999999999999998888764
No 409
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.28 E-value=54 Score=26.53 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=32.1
Q ss_pred HHHHHHHHhhc--cCCCCCchHHHHHHHHhhcCCchHHHHHHHH
Q 005966 603 LGEVAAKWLFE--LEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644 (667)
Q Consensus 603 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 644 (667)
.+..+|+.+.. ++-.-+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77888887765 4445566788888889999999999998875
No 410
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=60.16 E-value=85 Score=24.90 Aligned_cols=24 Identities=8% Similarity=-0.061 Sum_probs=15.3
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHh
Q 005966 622 YVLLSKLYSAVRRWKDAENVRDVM 645 (667)
Q Consensus 622 ~~~l~~~~~~~g~~~~A~~~~~~~ 645 (667)
.+.-+.++...|+.++|.+.|+..
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Confidence 334556677778888888777653
No 411
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.44 E-value=1.9e+02 Score=28.69 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=39.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHhHH
Q 005966 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS-HGGLLDEGLDLFNFMLE 545 (667)
Q Consensus 489 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~A~~~~~~~~~ 545 (667)
|..+.+.|-+.-|+++.+-+...++.-|+.....+|+.|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4567778888888888888887664446666666666654 66777777777776554
No 412
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=59.29 E-value=63 Score=25.83 Aligned_cols=47 Identities=11% Similarity=0.229 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 005966 501 AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENH 547 (667)
Q Consensus 501 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 547 (667)
..+-+......++.|++.....-+++|.+.+++.-|.++|+-++.+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 34445555566677888888888888888888888888888776633
No 413
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.26 E-value=82 Score=24.41 Aligned_cols=79 Identities=11% Similarity=0.032 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005966 227 EIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDVRNALGLFQLMQF 306 (667)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 306 (667)
..++|..+.+.+...+- ....+--.-+..+.+.|++++|+..=.....||...|-++-. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 44555555555555443 223333344556778888888844444444578777766554 467777777777777755
Q ss_pred cC
Q 005966 307 EG 308 (667)
Q Consensus 307 ~~ 308 (667)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 414
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=58.62 E-value=1.7e+02 Score=27.91 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhccCCCCCchHHH
Q 005966 602 ELGEVAAKWLFELEPENPGNYVL 624 (667)
Q Consensus 602 ~~A~~~~~~~~~~~p~~~~~~~~ 624 (667)
-.|.+...++.+.+|.-|..+..
T Consensus 379 ~~AvEAihRAvEFNPHVPkYLLE 401 (556)
T KOG3807|consen 379 INAVEAIHRAVEFNPHVPKYLLE 401 (556)
T ss_pred HHHHHHHHHHhhcCCCCcHHHHH
Confidence 34677788888988886655443
No 415
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.39 E-value=2.2e+02 Score=29.04 Aligned_cols=386 Identities=12% Similarity=0.056 Sum_probs=188.6
Q ss_pred hHHHHHHHHhhccC--ChhhHhHHHHHHHHhCCCc-h----hhhh--hHhhhcCChhhHHHhhc-------ccCCC-C--
Q 005966 14 HLVIKLVQQYAATK--SIAGTKQLHAFIITSGPLF-T----HLRS--SLVRAYGHVSNVRILFD-------EMSER-S-- 74 (667)
Q Consensus 14 ~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~-~----~~~~--~~~~~~g~~~~A~~~~~-------~~~~~-~-- 74 (667)
.++..++...-.++ .+..+++..+-+....|.+ . ++.. -++.-..+++.|..-++ .++.- |
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 34555666665666 4555566666665555555 1 1222 33333445555544444 34432 2
Q ss_pred cchHHHHHHHHHhCC-CchHHHHHHHHhHHcCCCCC--CcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHH
Q 005966 75 SFLYNTVMKMYAQNG-ASHDSLKMFLGMLRLGEYNP--DNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNC 151 (667)
Q Consensus 75 ~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 151 (667)
-.+++.|...|.... .+..+..++++.++.....| .......++....-..++..|.+++.--.+.. .+-.+.|..
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sA-d~~~~~ylr 166 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESA-DHICFPYLR 166 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcccccc-chhhhHHHH
Confidence 236666777777655 77888888888887622222 11112334455556677777777632211111 222333433
Q ss_pred HHHHH------HhcCCHHHHHHHh---cccCC---CChh--------hHHHHHHHHHHcCChhHHHHHHHHHHH---CCC
Q 005966 152 LIAMY------MNFGEVKAARKVF---DAMWE---HSVV--------SWNTLISGYFKNAYAKEALVVFDWMLK---SGV 208 (667)
Q Consensus 152 li~~~------~~~g~~~~A~~~~---~~~~~---~~~~--------~~~~li~~~~~~~~~~~A~~~~~~m~~---~g~ 208 (667)
++..+ ....+..++.++. .+|.+ +|.. -.+.-+.-|.-.|+...+...++++.+ .+-
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 33222 2223444444433 33322 1211 112223344556776666666665543 222
Q ss_pred CCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCc---chhHHHHHHHHHHhc--CCHHHHHHHHhhcCCCC--hhH-
Q 005966 209 EPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGK---NIAAWNALVDMYVKC--GSVNEARLVFDRMSERD--VVT- 280 (667)
Q Consensus 209 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~--~~~- 280 (667)
.|+ ..+..-+ .|. --..+++.+.+..+.. -..+...+..+|.+. .-.|+|+...++.++.| ...
T Consensus 247 t~~-~~h~e~i-----lgs--ps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~sril 318 (629)
T KOG2300|consen 247 TSS-RGHDEKI-----LGS--PSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRIL 318 (629)
T ss_pred CCC-CCccccc-----cCC--CChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 211 0000000 000 0001111111100000 011111222333221 23455555566666543 222
Q ss_pred -------HHHHHHHHHhCCChHHHHHHHHHHHhcC-CCCChhh-------HHHHHHH-hhcccchHHHHHHHHHHHHhcC
Q 005966 281 -------WTSMINGYALNGDVRNALGLFQLMQFEG-VRPNSLT-------IGSLLSA-CSSLYYLKRGRSLHAWTIKQNL 344 (667)
Q Consensus 281 -------~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t-------~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~ 344 (667)
...++..-.-.|++.+|++-+..|.+.- -.|.+.. ...++.- |+..+..+.|+.-|....+.--
T Consensus 319 sm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~ 398 (629)
T KOG2300|consen 319 SMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE 398 (629)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh
Confidence 2233333445799999999999998642 2233111 1223333 4557888888888877776554
Q ss_pred CCCchHH--hHHHHHHHhcCCHHHHHHHHhccCCCCcccHHH--------HHHH--HHhCCChHHHHHHHHHHHHC
Q 005966 345 ECEVIVE--TALIDMYAKCNLVKLSFQVFARTSKKKTVPWNA--------ILAG--CVHNGLARKAVELFRQMLVE 408 (667)
Q Consensus 345 ~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--------li~~--~~~~~~~~~A~~~~~~m~~~ 408 (667)
..+...+ ..+.-.|.+.|+.+.-.++++.+..++..++.. ++.+ ....+++.+|...+++-.+.
T Consensus 399 ~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 399 SIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred HHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 4444333 345667889999999999999988776655322 1111 23467888888888776543
No 416
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.34 E-value=1.5e+02 Score=27.31 Aligned_cols=183 Identities=12% Similarity=0.099 Sum_probs=116.2
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhCcCCHHHHHHHHHHHHH---hCC--CCCchHHHHHHHHHHhcC
Q 005966 392 NGLARKAVELFRQMLVEVVEPNDA---TLNSLLPAYAILADLQQAMNIHCYLIR---YGF--LSVVEVSTGLIDIYSKCG 463 (667)
Q Consensus 392 ~~~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~g 463 (667)
..++++|+.-|.+..+..-.-... .+..++....+.+++++....+..+.. ..+ ..+....+++++......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 457899999999988753333333 455677888999999999988887753 222 345667777887777776
Q ss_pred CHHHHHHHHhhCCCC---CCCcch----HHHHHHHHHHcCChHHHHHHHHHHHHcCC----CCCH-------HHHHHHHH
Q 005966 464 SLESAHKIFSEIPIK---DKDIVV----WSVIIAGYGMHGHGETAVSLFKEMVQSGV----QPNE-------VTFTSALH 525 (667)
Q Consensus 464 ~~~~A~~~~~~~~~~---~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~p~~-------~~~~~ll~ 525 (667)
+.+--.++++.-... ..+... -.-|...|...+.+.+..++++++...-- ..|. ..|..-+.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666555555432111 023332 34566777778888888888888776411 1111 34666677
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHH----HHHHhhcCChHHHHH
Q 005966 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCI----VDLLGRAGRLDEAYD 574 (667)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~ 574 (667)
.|....+-.+-..++++.+.....-|.+.....+ ..+..+.|++++|-.
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 7777788788888888776644444555444332 223456788888754
No 417
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=57.67 E-value=2.7e+02 Score=29.84 Aligned_cols=62 Identities=15% Similarity=0.055 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005966 413 NDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLIDIYSKCGSLESAHKIFSEIP 476 (667)
Q Consensus 413 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (667)
+......++..|.+.|-.+.+..+.+.+-..-.. ..-|..-+.-+.++|+...+..+-+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444555555566666655555555544322111 1234444455556666555555444443
No 418
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.26 E-value=43 Score=29.62 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=28.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 005966 580 PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEP 616 (667)
Q Consensus 580 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 616 (667)
...|++.++..++.++...|+.++|.+..+++..+.|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567777777777777888888888888888777777
No 419
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.79 E-value=1.7e+02 Score=27.18 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHhcCCHH-HHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCCccCCCe
Q 005966 584 THAVWGALLGACVIHGNVE-LGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLRKAPAH 656 (667)
Q Consensus 584 ~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 656 (667)
+-..|..--......|+.. .-+++.+.++..+..|-.+|.+--+++...+.|+.-+.+-.+|.+..+..+.+.
T Consensus 111 NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW 184 (318)
T KOG0530|consen 111 NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW 184 (318)
T ss_pred chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence 3444443333333344444 444555555555555555555555555555555555555555555555555443
No 420
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.69 E-value=2.5e+02 Score=29.12 Aligned_cols=68 Identities=22% Similarity=0.113 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHhhccC---CC----CCchHHHHHHHHhhcCC-chHHHHHHHHhhhCC
Q 005966 582 KPTHAVWGALLGAC--VIHGNVELGEVAAKWLFELE---PE----NPGNYVLLSKLYSAVRR-WKDAENVRDVMDEKG 649 (667)
Q Consensus 582 ~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~---p~----~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~ 649 (667)
.+|......++.++ ...|+.+.|...++...+.. -. -|.+++-|+-+|...|. ..++.+++.++++.+
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 56777776666664 45699999999999877421 11 36689999999999988 999999999987654
No 421
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=56.02 E-value=1.8e+02 Score=27.41 Aligned_cols=111 Identities=15% Similarity=0.147 Sum_probs=66.3
Q ss_pred ChHHHHHHHHHHHh-cCCCCChhhHHHHHHHhhc-cc-chHHHHHHHHHHHH-hcCCCCchHHhHHHHHHHhcCCHHHHH
Q 005966 293 DVRNALGLFQLMQF-EGVRPNSLTIGSLLSACSS-LY-YLKRGRSLHAWTIK-QNLECEVIVETALIDMYAKCNLVKLSF 368 (667)
Q Consensus 293 ~~~~a~~~~~~m~~-~~~~p~~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~ 368 (667)
-+.+|+++|+.... ..+.-|......+++.... .+ ....-.++.+.+.. .+-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666653221 2345566666666666544 11 22222233333332 234666777777888888888888888
Q ss_pred HHHhccC-----CCCcccHHHHHHHHHhCCChHHHHHHHH
Q 005966 369 QVFARTS-----KKKTVPWNAILAGCVHNGLARKAVELFR 403 (667)
Q Consensus 369 ~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~A~~~~~ 403 (667)
++++... ..|..+|..+|......|+..-...+..
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 8877554 4567778888888888888765544443
No 422
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=55.66 E-value=1.6e+02 Score=26.81 Aligned_cols=120 Identities=11% Similarity=-0.014 Sum_probs=76.6
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCCCcc-hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCCHHH
Q 005966 458 IYSKCGSLESAHKIFSEIPIKDKDIV-VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVT-FTSALHACSHGGLLDE 535 (667)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~ 535 (667)
-|....++..|+..|.+.....|.+. -|..-+.++.+.++++.+..=-.+.++ +.||.+. ...+..+......+++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccH
Confidence 36667788889998888877778774 456677788888888888877777766 4677764 4445555667788899
Q ss_pred HHHHHHHhHHh---cCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC
Q 005966 536 GLDLFNFMLEN---HQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 536 A~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (667)
|+..+.+.... ..+++-......|.++--..-...++.++.++.
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 99888877432 333344444444444333333333344444443
No 423
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.09 E-value=49 Score=29.26 Aligned_cols=32 Identities=13% Similarity=0.054 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005966 514 QPNEVTFTSALHACSHGGLLDEGLDLFNFMLE 545 (667)
Q Consensus 514 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 545 (667)
.|+...|..++.++...|+.++|.+...++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555555555444
No 424
>PRK13342 recombination factor protein RarA; Reviewed
Probab=55.04 E-value=2.5e+02 Score=28.61 Aligned_cols=46 Identities=11% Similarity=0.031 Sum_probs=31.8
Q ss_pred HHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCc
Q 005966 382 WNAILAGCVH---NGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAIL 427 (667)
Q Consensus 382 ~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 427 (667)
+..+++++.+ .++.+.|+.++..|.+.|..|....-..+..++-..
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 4445555555 478999999999999998888766555555554333
No 425
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=54.81 E-value=86 Score=23.26 Aligned_cols=65 Identities=14% Similarity=0.129 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHH
Q 005966 130 GIALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEA 196 (667)
Q Consensus 130 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 196 (667)
+.++++.+.+.|+ .+......+-.+--..|+.+.|.+++..++ +....|...+.++-..|.-.-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4456666666663 222333333222234577777777777777 6677777777777766665443
No 426
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.50 E-value=43 Score=28.85 Aligned_cols=25 Identities=32% Similarity=0.626 Sum_probs=12.2
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCC
Q 005966 594 ACVIHGNVELGEVAAKWLFELEPENP 619 (667)
Q Consensus 594 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 619 (667)
.|.+.|.+++|.+++++..+ +|+..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~-d~~~~ 144 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS-DPESQ 144 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc-CCCch
Confidence 34555555555555555544 44433
No 427
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=53.33 E-value=2e+02 Score=27.13 Aligned_cols=60 Identities=10% Similarity=0.152 Sum_probs=41.0
Q ss_pred CCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCC-----CChhHHHHHHHHHHhCCChHHHHHHHH
Q 005966 243 LGKNIAAWNALVDMYVKCGSVNEARLVFDRMSE-----RDVVTWTSMINGYALNGDVRNALGLFQ 302 (667)
Q Consensus 243 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~ 302 (667)
-.++..+...+++.+++.+++.+-.++++.... .|...|..+|..-...|+..-...+.+
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 345566677777777777777777777766543 466777778877777777655544443
No 428
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=51.55 E-value=3.5e+02 Score=29.33 Aligned_cols=29 Identities=3% Similarity=-0.093 Sum_probs=16.6
Q ss_pred chHHHHHHHHH-hCCCchHHHHHHHHhHHc
Q 005966 76 FLYNTVMKMYA-QNGASHDSLKMFLGMLRL 104 (667)
Q Consensus 76 ~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~ 104 (667)
.++-.+...+. ...+++.|...+++.+..
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l 89 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILL 89 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555555554 455666666666666544
No 429
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=51.29 E-value=1.1e+02 Score=30.20 Aligned_cols=137 Identities=12% Similarity=0.007 Sum_probs=81.1
Q ss_pred cchHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--------HHhccCCHHHHHHHHHHhHHhcCCCC
Q 005966 482 IVVWSVIIAGY--GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALH--------ACSHGGLLDEGLDLFNFMLENHQTCS 551 (667)
Q Consensus 482 ~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--------~~~~~g~~~~A~~~~~~~~~~~~~~~ 551 (667)
+..|-.++..+ ...+++.+|.++-+.....-..-|..++..+.. +|...|+...-..++.......-..-
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 34454444433 345778888888877665434456667665443 33455666666666665554333322
Q ss_pred c----hhHHHHHHHHHhhcCChHHHHHHHHhCCCCCC--HHHH----HHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 005966 552 R----ADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPT--HAVW----GALLGACVIHGNVELGEVAAKWLFELEPEN 618 (667)
Q Consensus 552 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 618 (667)
| ....|+|++.|...+.++.|..+..+...+-. ..-| ..+...-.-++++..|.+.+-+++...|.+
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 2 34566677777788888888888887742111 1111 122233345678888888888888888873
No 430
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=50.60 E-value=26 Score=32.71 Aligned_cols=57 Identities=16% Similarity=0.250 Sum_probs=24.5
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCch
Q 005966 565 RAGRLDEAYDLIRTM-PLKP-THAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGN 621 (667)
Q Consensus 565 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 621 (667)
+.|+.++|..+|+.. ...| ++..+..+....-..++.-+|..+|-+++...|.+..+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 344444444444433 2333 22233333333333344555555555555555554443
No 431
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=50.05 E-value=4.5e+02 Score=30.18 Aligned_cols=26 Identities=4% Similarity=-0.068 Sum_probs=13.2
Q ss_pred HHHhhcCCCChhHHHHHHHHHHhCCC
Q 005966 268 LVFDRMSERDVVTWTSMINGYALNGD 293 (667)
Q Consensus 268 ~~~~~~~~~~~~~~~~li~~~~~~~~ 293 (667)
.+.+.+.++|...-...+..+.+.+.
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~ 650 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP 650 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc
Confidence 33344445555555555555555554
No 432
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=49.22 E-value=33 Score=32.24 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHH
Q 005966 179 SWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVL 219 (667)
Q Consensus 179 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 219 (667)
-|+..|..-.+.|++++|+.++++.++.|+.--..+|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 47788999999999999999999999988876555554433
No 433
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=48.96 E-value=2.6e+02 Score=29.16 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=28.1
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005966 560 VDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGE 605 (667)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 605 (667)
...+.|.+++++|+.+--.++ +...+..+-......|+.+.|.
T Consensus 501 FhhLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 501 FHHLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred HHHHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhh
Confidence 345567788888888777664 4455555655566677776664
No 434
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=48.86 E-value=4.2e+02 Score=29.49 Aligned_cols=190 Identities=16% Similarity=0.045 Sum_probs=92.2
Q ss_pred HhCCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCCCCchHHHHHH-----HHHH
Q 005966 390 VHNGLARKAVELFRQMLVE----VVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFLSVVEVSTGLI-----DIYS 460 (667)
Q Consensus 390 ~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~ 460 (667)
...|++++|+++.+..... -..+....+..+..+..-.|++++|..+.+...+..-..+...+.... ..+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3457778887777765543 123344555666666677788888887777665543333333333322 2344
Q ss_pred hcCCHH--HHHHHHhhCCCCC--------CCcchHHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHH
Q 005966 461 KCGSLE--SAHKIFSEIPIKD--------KDIVVWSVIIAGYGM-HGHGETAVSLFKEMVQSGVQPNEVTF--TSALHAC 527 (667)
Q Consensus 461 ~~g~~~--~A~~~~~~~~~~~--------~~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~ 527 (667)
..|+.. +....|....... +-..++..+..++.+ .+...++..-++-.......|-...+ ..|+...
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~ 628 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELE 628 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHH
Confidence 555322 2222232222211 112334444444444 11222222223322222222222222 2566677
Q ss_pred hccCCHHHHHHHHHHhHHhcCCC-Cchh--HHHHHHHH--HhhcCChHHHHHHHHhC
Q 005966 528 SHGGLLDEGLDLFNFMLENHQTC-SRAD--HYTCIVDL--LGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 528 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~--~~~~l~~~--~~~~g~~~~A~~~~~~~ 579 (667)
...|+.++|...+.++.....-. +.+. .-...+.. -..+|+.++|.....+-
T Consensus 629 ~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 629 FLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 77888888888888776622111 1221 11112222 23577777777766653
No 435
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.57 E-value=1.1e+02 Score=23.92 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005966 280 TWTSMINGYALNGDVRNALGLFQLMQF 306 (667)
Q Consensus 280 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 306 (667)
-|..++.-|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588899999999999999999999876
No 436
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=48.40 E-value=3.7e+02 Score=28.77 Aligned_cols=27 Identities=4% Similarity=0.032 Sum_probs=19.6
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhH
Q 005966 75 SFLYNTVMKMYAQNGASHDSLKMFLGML 102 (667)
Q Consensus 75 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 102 (667)
+.-|+ .+..+.-.|.+++|..++...-
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 56687 6778888999999999985543
No 437
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.80 E-value=73 Score=20.41 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=19.2
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCChHHHHHHHH
Q 005966 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLP 220 (667)
Q Consensus 188 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 220 (667)
.+.|-..++..++++|.+.|+.-+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555666666666666666655555554443
No 438
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=47.67 E-value=40 Score=19.42 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHhhccCCCCCchHHHHH
Q 005966 600 NVELGEVAAKWLFELEPENPGNYVLLS 626 (667)
Q Consensus 600 ~~~~A~~~~~~~~~~~p~~~~~~~~l~ 626 (667)
.++.|..+|++.+...|+ +..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 467788888888887776 66666554
No 439
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.21 E-value=1.8e+02 Score=26.69 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhc-----cCCCCCchHHH---H-HHHHhhcCCchHHHHHHHHhhhC
Q 005966 602 ELGEVAAKWLFE-----LEPENPGNYVL---L-SKLYSAVRRWKDAENVRDVMDEK 648 (667)
Q Consensus 602 ~~A~~~~~~~~~-----~~p~~~~~~~~---l-~~~~~~~g~~~~A~~~~~~~~~~ 648 (667)
+.|...|+++.+ +.|.+|..+-. . +-.|.-.|+.++|.++-++..+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 556666666543 45555543221 1 22234567777777776665443
No 440
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.70 E-value=26 Score=28.33 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=24.0
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 005966 188 FKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPA 221 (667)
Q Consensus 188 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 221 (667)
-..|.-..|..+|+.|++.|-.|| .|+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 345677889999999999999987 35555543
No 441
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.86 E-value=38 Score=31.88 Aligned_cols=40 Identities=25% Similarity=0.202 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHH
Q 005966 280 TWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSL 319 (667)
Q Consensus 280 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~l 319 (667)
-|+.-|....+.||+++|+.++++.++.|+.--..||...
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3678899999999999999999999998886655555433
No 442
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.54 E-value=59 Score=22.26 Aligned_cols=30 Identities=7% Similarity=0.063 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005966 516 NEVTFTSALHACSHGGLLDEGLDLFNFMLE 545 (667)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 545 (667)
|..-...++.++...|++++|.++++.+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344455666666666666666666544
No 443
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.15 E-value=1.3e+02 Score=22.41 Aligned_cols=38 Identities=11% Similarity=-0.023 Sum_probs=24.4
Q ss_pred hcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHH
Q 005966 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKA 398 (667)
Q Consensus 360 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 398 (667)
..|+.+.|..++..+. +++-.|..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3466667777777776 6666666677766666654444
No 444
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.11 E-value=81 Score=20.19 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=22.7
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005966 389 CVHNGLARKAVELFRQMLVEVVEPNDATLNSLLP 422 (667)
Q Consensus 389 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 422 (667)
..+.|-..++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3445666677777777777777777666665554
No 445
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.63 E-value=1.4e+02 Score=25.87 Aligned_cols=18 Identities=11% Similarity=0.370 Sum_probs=9.9
Q ss_pred HHhhcCChHHHHHHHHhC
Q 005966 562 LLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~ 579 (667)
.|.+.|.+++|.+++++.
T Consensus 120 VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 120 VCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHhcCchHHHHHHHHHH
Confidence 455555555555555554
No 446
>PHA02875 ankyrin repeat protein; Provisional
Probab=43.35 E-value=3.7e+02 Score=27.24 Aligned_cols=211 Identities=11% Similarity=-0.026 Sum_probs=103.1
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCChhh--HHHHHHHhhcccchHHHHHHHHHHHHhcCCCCch--HHhHHHHHHHhcCC
Q 005966 288 YALNGDVRNALGLFQLMQFEGVRPNSLT--IGSLLSACSSLYYLKRGRSLHAWTIKQNLECEVI--VETALIDMYAKCNL 363 (667)
Q Consensus 288 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~ 363 (667)
.+..|+.+- ++.+.+.|..|+... -.+.+..++..|+.+-+ +.+.+.|..++.. .....+...+..|+
T Consensus 9 A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 345666644 444556677776533 33455555666776544 4445556554432 12234556667888
Q ss_pred HHHHHHHHhccCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHhCcCCHHHHHHHHH
Q 005966 364 VKLSFQVFARTSKKKTVP---WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATL--NSLLPAYAILADLQQAMNIHC 438 (667)
Q Consensus 364 ~~~a~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~ 438 (667)
.+.+..+++.-...+... -...+...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+-+..
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~--- 153 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL--- 153 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH---
Confidence 888888877543221110 11233334455654 445555566766543211 123334445666554443
Q ss_pred HHHHhCCCCCch--HHHHHHHHHHhcCCHHHHHHHHhhCCCCC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 005966 439 YLIRYGFLSVVE--VSTGLIDIYSKCGSLESAHKIFSEIPIKD-KDIVVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQP 515 (667)
Q Consensus 439 ~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 515 (667)
+.+.|..++.. .-...+...+..|+.+-+.-+++.-.... .+.....+++...+..|+. ++.+-+.+.|..+
T Consensus 154 -Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~~gad~ 228 (413)
T PHA02875 154 -LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIKRGADC 228 (413)
T ss_pred -HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHHCCcCc
Confidence 34444433211 11122333445677766666665433311 1111122344434455554 3555666777777
Q ss_pred CHH
Q 005966 516 NEV 518 (667)
Q Consensus 516 ~~~ 518 (667)
+..
T Consensus 229 n~~ 231 (413)
T PHA02875 229 NIM 231 (413)
T ss_pred chH
Confidence 653
No 447
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=43.20 E-value=1.6e+02 Score=23.86 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=29.2
Q ss_pred HHHHHHHhhc--cCCCCCchHHHHHHHHhhcCCchHHHHHHH
Q 005966 604 GEVAAKWLFE--LEPENPGNYVLLSKLYSAVRRWKDAENVRD 643 (667)
Q Consensus 604 A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 643 (667)
...+|+.+.. ++-..+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666654 334456677788888889999999988876
No 448
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=42.32 E-value=3.8e+02 Score=27.16 Aligned_cols=231 Identities=12% Similarity=-0.034 Sum_probs=113.5
Q ss_pred HHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 005966 82 MKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNFGE 161 (667)
Q Consensus 82 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 161 (667)
|.++...| +.++..+-..... .++...+.....++....+ ..+...+-... -.++..+......++...+.
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~---d~~~ev~~~aa~al~~~~~-~~~~~~L~~~L---~d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAE---ADEPGRVACAALALLAQED-ALDLRSVLAVL---QAGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhh---CCChhHHHHHHHHHhccCC-hHHHHHHHHHh---cCCCHHHHHHHHHHHhcCCc
Confidence 56666666 5666666666643 2233333333333332222 22222222222 23455567777777777777
Q ss_pred HHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhc
Q 005966 162 VKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGG 241 (667)
Q Consensus 162 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (667)
......+...+...+.......+.++...+. .+...+....+ .+|...-...+.+++..+..+....+. .+..
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~-~al~- 188 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLSESTLR-LYLR- 188 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHH-HHHc-
Confidence 6666666666655565555555555554332 23334444443 455555566666666655543333222 2222
Q ss_pred CCCcchhHHHHHHHHHHhcCCHHHHHHHHhh-cCCCChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhHHHHH
Q 005966 242 RLGKNIAAWNALVDMYVKCGSVNEARLVFDR-MSERDVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTIGSLL 320 (667)
Q Consensus 242 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll 320 (667)
..|..+-..-+.+....|. ..|...+.. ..+++....-.+...+...| .+++.+.+..+.+. ++ +-...+
T Consensus 189 --d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~-~~~a~~~L~~ll~d---~~--vr~~a~ 259 (410)
T TIGR02270 189 --DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAG-GPDAQAWLRELLQA---AA--TRREAL 259 (410)
T ss_pred --CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCC-chhHHHHHHHHhcC---hh--hHHHHH
Confidence 2455666666666666666 555555444 33344444333333333332 23555555555432 11 344455
Q ss_pred HHhhcccchHHHHHHHH
Q 005966 321 SACSSLYYLKRGRSLHA 337 (667)
Q Consensus 321 ~~~~~~~~~~~a~~~~~ 337 (667)
.++...|+...+..+..
T Consensus 260 ~AlG~lg~p~av~~L~~ 276 (410)
T TIGR02270 260 RAVGLVGDVEAAPWCLE 276 (410)
T ss_pred HHHHHcCCcchHHHHHH
Confidence 55555555544444333
No 449
>PHA02875 ankyrin repeat protein; Provisional
Probab=42.32 E-value=3.8e+02 Score=27.13 Aligned_cols=147 Identities=12% Similarity=0.028 Sum_probs=61.6
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCChhhH--HHHHHHhhcccc
Q 005966 255 DMYVKCGSVNEARLVFDRMSER----DVVTWTSMINGYALNGDVRNALGLFQLMQFEGVRPNSLTI--GSLLSACSSLYY 328 (667)
Q Consensus 255 ~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~--~~ll~~~~~~~~ 328 (667)
...+..|+.+.+..+++.-... +..-.+ .+...+..|+. ++++.+.+.|..|+.... .+.+...+..|+
T Consensus 73 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~ 147 (413)
T PHA02875 73 HDAVEEGDVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGD 147 (413)
T ss_pred HHHHHCCCHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 3444556666665555543211 111111 22223344444 344445555655543211 123334444555
Q ss_pred hHHHHHHHHHHHHhcCCCCch--HHhHHHHHHHhcCCHHHHHHHHhccCCCCccc---HHHHHHHHHhCCChHHHHHHHH
Q 005966 329 LKRGRSLHAWTIKQNLECEVI--VETALIDMYAKCNLVKLSFQVFARTSKKKTVP---WNAILAGCVHNGLARKAVELFR 403 (667)
Q Consensus 329 ~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~ 403 (667)
.+.+..+ .+.|..++.. .-.+-+...+..|+.+-+.-+++.-...+... ..+.+...+..|+.+ +.+
T Consensus 148 ~~~v~~L----l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~ 219 (413)
T PHA02875 148 IKGIELL----IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVR 219 (413)
T ss_pred HHHHHHH----HhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHH
Confidence 5443333 3334332211 11122333445566666666665444333222 223344334455543 344
Q ss_pred HHHHCCCCCCH
Q 005966 404 QMLVEVVEPND 414 (667)
Q Consensus 404 ~m~~~g~~p~~ 414 (667)
-+.+.|..++.
T Consensus 220 ~Ll~~gad~n~ 230 (413)
T PHA02875 220 LFIKRGADCNI 230 (413)
T ss_pred HHHHCCcCcch
Confidence 44555666553
No 450
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=42.18 E-value=1.7e+02 Score=29.51 Aligned_cols=42 Identities=21% Similarity=0.304 Sum_probs=29.0
Q ss_pred HHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 576 IRTMPLKPTHA--VWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 576 ~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
|...++.|... ++..-+..+.+.+++..|-.+.++++++.|.
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 33335666443 5667777788999999999999999999986
No 451
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=41.91 E-value=1.6e+02 Score=28.35 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=47.7
Q ss_pred HHHHHHhCCCchHHHHHHHHhHHcC--CCCCCcccHH--HHHHHhccccchHHHHHHHHHHHH-----hCCCCchHH-HH
Q 005966 81 VMKMYAQNGASHDSLKMFLGMLRLG--EYNPDNYTYP--IVIKACTDLAWRKLGIALHGRVLI-----TGFDMDTFV-GN 150 (667)
Q Consensus 81 l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~-~~ 150 (667)
++.+.-+.++.++|++.++++.+.- -..|+...|. .+.+++...|+..+++.++++..+ .+++|++.+ |.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 4444555667888888888887540 1234444443 334555567788888877777776 566664433 44
Q ss_pred HHHHHHH-hcCCHHH
Q 005966 151 CLIAMYM-NFGEVKA 164 (667)
Q Consensus 151 ~li~~~~-~~g~~~~ 164 (667)
.+-+-|. +.|++..
T Consensus 161 ~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHhHHH
Confidence 4443333 3344443
No 452
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=41.83 E-value=6e+02 Score=29.27 Aligned_cols=112 Identities=16% Similarity=0.030 Sum_probs=61.6
Q ss_pred HHHHHHHHHhccC--CHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005966 519 TFTSALHACSHGG--LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596 (667)
Q Consensus 519 ~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 596 (667)
-+..++.+|.+.+ ++++|+.....+.+. +.......++.++- +-++-++|+.+---=| .=..++-|-.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~-----~~~~ae~alkyl~f---LvDvn~Ly~~ALG~YD--l~Lal~VAq~ 883 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE-----DPESAEEALKYLCF---LVDVNKLYDVALGTYD--LELALMVAQQ 883 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc-----ChHHHHHHHhHhee---eccHHHHHHHHhhhcC--HHHHHHHHHH
Confidence 4566777888877 888888888888762 11111111111111 1111122222100001 1134455566
Q ss_pred hcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHh
Q 005966 597 IHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM 645 (667)
Q Consensus 597 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 645 (667)
.+.|..+=+-+++++.++.|.. .... +=...|+|++|++.+-++
T Consensus 884 SQkDPKEYLPfL~~L~~l~~~~---rry~--ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 884 SQKDPKEYLPFLQELQKLPPLY---RRYK--IDDHLKRYEKALRHLSAC 927 (928)
T ss_pred hccChHHHHHHHHHHHhCChhh---eeee--HhhhhCCHHHHHHHHHhh
Confidence 7788888888888888886652 1222 334568999999887654
No 453
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=41.68 E-value=93 Score=21.61 Aligned_cols=51 Identities=10% Similarity=-0.108 Sum_probs=30.8
Q ss_pred CCCcccHHHHHHHhccccchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 005966 108 NPDNYTYPIVIKACTDLAWRKLGIALHGRVLITGFDMDTFVGNCLIAMYMNF 159 (667)
Q Consensus 108 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 159 (667)
.|....++.++..+++..-.++++..+.++...| ..+..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 3455566666666666666777777777777666 35555555555555543
No 454
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=41.29 E-value=1.6e+02 Score=23.12 Aligned_cols=97 Identities=12% Similarity=0.097 Sum_probs=52.6
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCH
Q 005966 525 HACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM---PLKPTHAVWGALLGACVIHGNV 601 (667)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~ 601 (667)
..+.+.|+.-+|+++.+++...++-..+.... ...+|. +|.+. ...||...- -.
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~~~~~l------h~~QG~------if~~lA~~ten~d~k~~-----------yL 60 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDESSWLL------HRLQGT------IFYKLAKKTENPDVKFR-----------YL 60 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCCchHHH------HHHHhH------HHHHHHHhccCchHHHH-----------HH
Confidence 44667788888888888887766554433111 111221 11111 113332211 11
Q ss_pred HHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHH
Q 005966 602 ELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDV 644 (667)
Q Consensus 602 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 644 (667)
-.+.+.+.++..+.|+.+..++.|++-+...-.|+++..--++
T Consensus 61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 61 LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2356677778888888766666666666555556666655444
No 455
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=40.99 E-value=1.9e+02 Score=23.30 Aligned_cols=61 Identities=15% Similarity=0.018 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhh
Q 005966 552 RADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVW-GALLGACVIHGNVELGEVAAKWLF 612 (667)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~ 612 (667)
-..+..++..++.-.|..++|.++++..+.-++...+ ..++..|.+..+.++-.++-++.+
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 3445566777777888888888888888766665544 456777777777766666655443
No 456
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=40.73 E-value=3.5e+02 Score=26.19 Aligned_cols=56 Identities=11% Similarity=0.002 Sum_probs=21.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHh
Q 005966 519 TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578 (667)
Q Consensus 519 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 578 (667)
....++....+.|..+.-..+++.... .++......++.+++...+.+...++++.
T Consensus 171 lr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~~~~~l~~ 226 (324)
T PF11838_consen 171 LRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSALACSPDPELLKRLLDL 226 (324)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHHHHHHHHH
Confidence 333344444444444443333333322 12333344444555444444444444433
No 457
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.66 E-value=1.9e+02 Score=31.82 Aligned_cols=130 Identities=12% Similarity=0.036 Sum_probs=63.9
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHH
Q 005966 493 GMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEA 572 (667)
Q Consensus 493 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 572 (667)
...|+.+.|++.-.++ -+..+|..|.....+.|+.+-|+..|++... |.-|.-.|.-.|+.++-
T Consensus 654 Le~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn----------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN----------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred hhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh----------hhheeEEEEEeCCHHHH
Confidence 3445666555444332 1445666666666666666666666666544 33444455566666665
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 573 YDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 573 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
.++.+.++.+.|..+.. ....-.|+.++-..+++..= .-+-+|.. -...|.-++|.++.++..++.
T Consensus 718 ~Km~~iae~r~D~~~~~---qnalYl~dv~ervkIl~n~g----~~~laylt----a~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 718 SKMMKIAEIRNDATGQF---QNALYLGDVKERVKILENGG----QLPLAYLT----AAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HHHHHHHHhhhhhHHHH---HHHHHhccHHHHHHHHHhcC----cccHHHHH----HhhcCcHHHHHHHHHhhcccc
Confidence 55555554443432211 11123455555544444321 11112221 123466666666666665533
No 458
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=40.65 E-value=3.5e+02 Score=26.29 Aligned_cols=141 Identities=11% Similarity=0.035 Sum_probs=90.5
Q ss_pred hCCCCCCCcchHHHHHHHHHHcCC------------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 005966 474 EIPIKDKDIVVWSVIIAGYGMHGH------------GETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFN 541 (667)
Q Consensus 474 ~~~~~~~~~~~~~~l~~~~~~~~~------------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 541 (667)
.+.+...|+.+|-.++..--..-. .+.-+.++++.++.+ +-+...+..++..+.+..+.++..+-|+
T Consensus 11 ~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we 89 (321)
T PF08424_consen 11 RVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWE 89 (321)
T ss_pred HHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 334432468889888875433211 355677889988874 2345567778888888888889899999
Q ss_pred HhHHhcCCCCchhHHHHHHHHHhh---cCChHHHHHHHHhC-------CCCC----------CHHH---HHHHHHHHHhc
Q 005966 542 FMLENHQTCSRADHYTCIVDLLGR---AGRLDEAYDLIRTM-------PLKP----------THAV---WGALLGACVIH 598 (667)
Q Consensus 542 ~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~-------~~~p----------~~~~---~~~l~~~~~~~ 598 (667)
++... .+-+...|...++.... .-.+++...+|.+. .... +... +..+.......
T Consensus 90 ~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~a 167 (321)
T PF08424_consen 90 ELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQA 167 (321)
T ss_pred HHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHC
Confidence 99883 33456778887776554 23455666665554 2221 1122 22233334578
Q ss_pred CCHHHHHHHHHHhhccCCC
Q 005966 599 GNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 599 g~~~~A~~~~~~~~~~~p~ 617 (667)
|-.|.|..+++-+++++--
T Consensus 168 G~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 168 GYTERAVALWQALLEFNFF 186 (321)
T ss_pred CchHHHHHHHHHHHHHHcC
Confidence 8999999999988887643
No 459
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=40.56 E-value=5.2e+02 Score=28.18 Aligned_cols=120 Identities=14% Similarity=0.099 Sum_probs=61.7
Q ss_pred HHhcCCHHHHHHHHhhCCCCCCCcc----hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 005966 459 YSKCGSLESAHKIFSEIPIKDKDIV----VWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLD 534 (667)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 534 (667)
+.--|+.++|..+.+++.... |+. -.-++..+|+-.|+-....+++.-.+.. +.-|..-...+.-++.-..+.+
T Consensus 511 L~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChh
Confidence 334455566666666665542 221 1223444566666655555555544442 2334444444444555556677
Q ss_pred HHHHHHHHhHHhcCCCCchhHHHH--HHHHHhhcCChHHHHHHHHhCCCCC
Q 005966 535 EGLDLFNFMLENHQTCSRADHYTC--IVDLLGRAGRLDEAYDLIRTMPLKP 583 (667)
Q Consensus 535 ~A~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~p 583 (667)
....+.+-+.+. ..|.+..-.+ |.-+|+-.| ..+|+.+++-|...|
T Consensus 589 ~~~s~V~lLses--~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~D~ 636 (929)
T KOG2062|consen 589 QLPSTVSLLSES--YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTSDP 636 (929)
T ss_pred hchHHHHHHhhh--cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhcCh
Confidence 777777666662 3344432222 333333333 567788887775444
No 460
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=40.34 E-value=1.6e+02 Score=22.18 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=26.8
Q ss_pred HHcCChHHHHHHHHHHHH----cCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 005966 493 GMHGHGETAVSLFKEMVQ----SGVQPN----EVTFTSALHACSHGGLLDEGLDLFNFMLE 545 (667)
Q Consensus 493 ~~~~~~~~a~~~~~~m~~----~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 545 (667)
.+.|++.+|.+.+.+..+ .+..+. ......+.......|.+++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456666666555444433 221111 11222233445566777777777766655
No 461
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.89 E-value=43 Score=27.14 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=22.7
Q ss_pred HHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHh
Q 005966 85 YAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKAC 121 (667)
Q Consensus 85 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 121 (667)
....|.-.+|-.+|++|++. |.+|| .|+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~-G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLER-GNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhC-CCCCc--cHHHHHHHh
Confidence 34445667788888888888 67776 456665543
No 462
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=39.81 E-value=77 Score=29.93 Aligned_cols=69 Identities=4% Similarity=-0.088 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHH-HHHHHhhcCCchHHHHHHHHhhhCC
Q 005966 581 LKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPENPGNYVL-LSKLYSAVRRWKDAENVRDVMDEKG 649 (667)
Q Consensus 581 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~ 649 (667)
...|+..|...+....+.|.+.+...++.+++..+|.|...|.. -..-|...++++.++.+|.+-.+.+
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 34577788888777778889999999999999999999998886 5666888899999999998866554
No 463
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=39.80 E-value=2.9e+02 Score=26.27 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=9.8
Q ss_pred CCCCHHHHHHHHHHHhCcC
Q 005966 410 VEPNDATLNSLLPAYAILA 428 (667)
Q Consensus 410 ~~p~~~~~~~ll~~~~~~~ 428 (667)
++|+..+.......+...|
T Consensus 219 fPpnkrs~E~Fak~Ft~ag 237 (412)
T KOG2297|consen 219 FPPNKRSVEHFAKYFTDAG 237 (412)
T ss_pred cCCcchhHHHHHHHHhHhh
Confidence 3566555555555444443
No 464
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=38.72 E-value=2.1e+02 Score=27.56 Aligned_cols=118 Identities=12% Similarity=0.069 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc------cCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHH
Q 005966 498 GETAVSLFKEMVQSGVQPNEVTFTSALHACSH------GGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDE 571 (667)
Q Consensus 498 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 571 (667)
.+++..++++....+ .|.+......|.++.. .-+|.....+|+.+.. ..|++.+--.-..+.....-.+.
T Consensus 272 I~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhHHh
Confidence 456677777766665 4677666666655421 2356666666666654 22333222222333444444666
Q ss_pred HHHHHHhCCCCCC---HH-HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCC
Q 005966 572 AYDLIRTMPLKPT---HA-VWGALLGACVIHGNVELGEVAAKWLFELEPENP 619 (667)
Q Consensus 572 A~~~~~~~~~~p~---~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 619 (667)
++..++.+...|. .. .+..-...+.+.|..++|...|++++.+.++..
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 6666666643321 11 223334446677888888888888888777643
No 465
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=38.72 E-value=3.3e+02 Score=25.43 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=31.4
Q ss_pred HHHHHhhcCChHHHHHHHHh---CC-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 005966 559 IVDLLGRAGRLDEAYDLIRT---MP-LKP-----THAVWGALLGACVIHGNVELGEVAAKWLFELEPE 617 (667)
Q Consensus 559 l~~~~~~~g~~~~A~~~~~~---~~-~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 617 (667)
|...|.+.|+++.|-.++-- .. ... +......++......++++.+.++.+-+..++|+
T Consensus 185 Lf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~ 252 (258)
T PF07064_consen 185 LFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPE 252 (258)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 44555566666666544332 22 111 2223344555556667777777766666666665
No 466
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=37.89 E-value=2.8e+02 Score=24.34 Aligned_cols=65 Identities=11% Similarity=0.052 Sum_probs=40.7
Q ss_pred HHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Q 005966 370 VFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYG 444 (667)
Q Consensus 370 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 444 (667)
+.+...++..++|.....+-++.-..+++.+.+-- .+=.+++-.|.+..++.+++.+++.+.+..
T Consensus 98 Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~ 162 (233)
T PF14669_consen 98 LTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQ 162 (233)
T ss_pred HHhcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455566777777777776555555443321 222356667778888888888888887644
No 467
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.83 E-value=5.1e+02 Score=27.28 Aligned_cols=154 Identities=12% Similarity=0.078 Sum_probs=83.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHhHHhc--CCCCchhHHHHHHHHHhh
Q 005966 489 IAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACS-HGGLLDEGLDLFNFMLENH--QTCSRADHYTCIVDLLGR 565 (667)
Q Consensus 489 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 565 (667)
|..+.+.|-+.-|.++-+-+.+....-|+.....+|+.|+ +..+|+--+++++...... ..-|+-..-.+++..|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4456777888888888888877665556777777777754 5677777777777664422 123554433345555555
Q ss_pred cCC---hHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhc--cCCCCCchHHHHHHHHhhcC----Cc
Q 005966 566 AGR---LDEAYDLIRTM-PLKPTHAVWGALLGACVIHGNVELGEVAAKWLFE--LEPENPGNYVLLSKLYSAVR----RW 635 (667)
Q Consensus 566 ~g~---~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g----~~ 635 (667)
... -+.|...+.++ ...|. .+..|+..+.-..+ |...--+... .....+.++..++.+|.... +.
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~~P~--vl~eLld~~~l~~d---a~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~~~vWk~ 503 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKHHPL--VLSELLDELLLGDD---ALTKDLKFDGSSAENSELPALMLLVKLYANRNEEVWKL 503 (665)
T ss_pred cCChhhHHHHHHHHHHHHHhCcH--HHHHHHHhccCCch---hhhhhhcccccccccccchHHHHHHHHHHhhhhHhhcC
Confidence 444 34455555544 23332 33444444332222 1111111111 11112558888999998654 23
Q ss_pred hHHHHHHHHhhh
Q 005966 636 KDAENVRDVMDE 647 (667)
Q Consensus 636 ~~A~~~~~~~~~ 647 (667)
.++...++....
T Consensus 504 P~~ls~l~~~~~ 515 (665)
T KOG2422|consen 504 PDVLSFLESAYH 515 (665)
T ss_pred hHHHHHHHHHHH
Confidence 455555555444
No 468
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.57 E-value=1.2e+02 Score=28.14 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=12.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhH
Q 005966 523 ALHACSHGGLLDEGLDLFNFML 544 (667)
Q Consensus 523 ll~~~~~~g~~~~A~~~~~~~~ 544 (667)
+..-|.+.|++++|.++|+.+.
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555556666665555553
No 469
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=37.46 E-value=2e+02 Score=30.53 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=11.4
Q ss_pred HHHHHcccCcchHHHHHHHHHHHh
Q 005966 217 SVLPACGYLKEIEMGRMIHELVAG 240 (667)
Q Consensus 217 ~ll~~~~~~~~~~~a~~~~~~~~~ 240 (667)
+++.+|...|++..+.++++....
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 444444444444444444444443
No 470
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=37.44 E-value=2.7e+02 Score=29.16 Aligned_cols=87 Identities=24% Similarity=0.308 Sum_probs=55.2
Q ss_pred HHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC-CCchHHHHHHHHhhc--CC
Q 005966 558 CIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLFELEPE-NPGNYVLLSKLYSAV--RR 634 (667)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~--g~ 634 (667)
.|-+-+....++.-|.++.++.++. ....|....-+|.+.+++..|..-|++++++..+ -|.+...+++.-... .+
T Consensus 561 cLRdqLie~ErYqlaV~mckKc~iD-~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ieGgpp~d 639 (1141)
T KOG1811|consen 561 CLRDQLIEAERYQLAVEMCKKCGID-TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIEGGPPRD 639 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC-cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhcCCCcch
Confidence 3444455566667777777766543 3447888888888888888888888888887643 355656665544332 24
Q ss_pred chHHHHHHHHh
Q 005966 635 WKDAENVRDVM 645 (667)
Q Consensus 635 ~~~A~~~~~~~ 645 (667)
.....++++..
T Consensus 640 Vq~Vrem~dhl 650 (1141)
T KOG1811|consen 640 VQDVREMLDHL 650 (1141)
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 471
>PF13934 ELYS: Nuclear pore complex assembly
Probab=36.94 E-value=3.3e+02 Score=24.85 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=32.8
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005966 523 ALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACV 596 (667)
Q Consensus 523 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 596 (667)
++.++...|+.+.|..+++.+.- ...+......+... ..++.+.||+.+.+....+-....+..++..|.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 44444455666666666655422 11122222222223 445666666666665532222334555555544
No 472
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.78 E-value=21 Score=24.44 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=16.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 005966 486 SVIIAGYGMHGHGETAVSLFKEMVQ 510 (667)
Q Consensus 486 ~~l~~~~~~~~~~~~a~~~~~~m~~ 510 (667)
-.+|.++...|++++|.++++++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456677777777777777766654
No 473
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=36.70 E-value=1.6e+02 Score=28.36 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=8.8
Q ss_pred CcCCHHHHHHHHHHHH
Q 005966 426 ILADLQQAMNIHCYLI 441 (667)
Q Consensus 426 ~~~~~~~a~~~~~~~~ 441 (667)
+.++.++|.++++++.
T Consensus 87 ~~~D~~~al~~Le~i~ 102 (380)
T KOG2908|consen 87 QISDKDEALEFLEKII 102 (380)
T ss_pred HhccHHHHHHHHHHHH
Confidence 3445666666655554
No 474
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=35.88 E-value=1.9e+02 Score=29.69 Aligned_cols=57 Identities=11% Similarity=0.161 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC
Q 005966 516 NEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 516 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (667)
+...|..++.-|...++|++|.++.....+ ...|.++.....+..+..-+...|..+
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~e-------qTMWAtlAa~Av~~~~m~~~EiAYaA~ 628 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQE-------QTMWATLAAVAVRKHQMQISEIAYAAA 628 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhccc-------hHHHHHHHHHHHhhccccHHHHHHHHh
Confidence 344566777777788888888887765543 345777777766666665555555444
No 475
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=35.55 E-value=4.2e+02 Score=25.69 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=71.5
Q ss_pred cCCHHHHHHHHhhCCCCC-CCcchHHHHHHHHHH------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCH
Q 005966 462 CGSLESAHKIFSEIPIKD-KDIVVWSVIIAGYGM------HGHGETAVSLFKEMVQSGVQPNEV-TFTSALHACSHGGLL 533 (667)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~------~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~ 533 (667)
.+-++++..++++....+ |.+....+.|.++.. .-+|.....+|+-+... .|+++ +.|--+ +.....-.
T Consensus 269 r~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~--apSPvV~LNRAV-Ala~~~Gp 345 (415)
T COG4941 269 RALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA--APSPVVTLNRAV-ALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh--CCCCeEeehHHH-HHHHhhhH
Confidence 344667777777654443 777777777766532 23677777788877775 44443 444433 23444446
Q ss_pred HHHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHhC
Q 005966 534 DEGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRTM 579 (667)
Q Consensus 534 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (667)
+.++...+.+.......-....+..-.+.+.+.|+.++|...|++.
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrA 391 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRA 391 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHH
Confidence 6677777776664334333344556677788888888888888875
No 476
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=35.51 E-value=3.9e+02 Score=25.33 Aligned_cols=80 Identities=13% Similarity=0.091 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----C--CHHHHHHHHHHhHHhcCCCCchhHHHHHHHHHhh----
Q 005966 497 HGETAVSLFKEMVQSGVQPNEVTFTSALHACSHG-----G--LLDEGLDLFNFMLENHQTCSRADHYTCIVDLLGR---- 565 (667)
Q Consensus 497 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 565 (667)
+..+|..+|++..+.|..+...+...+...|... - +...|...+.++-. .+ +......+..+|..
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~-~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAE-LG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHH-hc---CHHHHHHHHHHHHcCCCC
Confidence 6677777777777776443222233333333332 1 22367777777665 22 23334444555533
Q ss_pred cCChHHHHHHHHhCC
Q 005966 566 AGRLDEAYDLIRTMP 580 (667)
Q Consensus 566 ~g~~~~A~~~~~~~~ 580 (667)
..++++|...|.+..
T Consensus 204 ~~d~~~A~~wy~~Aa 218 (292)
T COG0790 204 PRDLKKAFRWYKKAA 218 (292)
T ss_pred CcCHHHHHHHHHHHH
Confidence 346777887777763
No 477
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.48 E-value=2e+02 Score=30.96 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=12.4
Q ss_pred HHHHHHhhcCCchHHHHHHHH
Q 005966 624 LLSKLYSAVRRWKDAENVRDV 644 (667)
Q Consensus 624 ~l~~~~~~~g~~~~A~~~~~~ 644 (667)
.|..++.+.|..++-.++++-
T Consensus 349 kLn~LlgrKG~leklq~YWdV 369 (1226)
T KOG4279|consen 349 KLNSLLGRKGALEKLQEYWDV 369 (1226)
T ss_pred HHHHHhhccchHHHHHHHHhH
Confidence 455556666666666666554
No 478
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.12 E-value=4.4e+02 Score=25.46 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=11.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHh
Q 005966 556 YTCIVDLLGRAGRLDEAYDLIRT 578 (667)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~ 578 (667)
+.....-|++.|+.+.|++.+++
T Consensus 107 ~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHH
Confidence 33444455555555555555543
No 479
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.89 E-value=4e+02 Score=24.94 Aligned_cols=104 Identities=12% Similarity=0.059 Sum_probs=48.1
Q ss_pred hcCCHHHHHHHHhccCCCCcccHHHHHHHHHhCCChHHHHHHHHH----HHHCCCCCCHHHHHHHHHHHhCcCCHH-HHH
Q 005966 360 KCNLVKLSFQVFARTSKKKTVPWNAILAGCVHNGLARKAVELFRQ----MLVEVVEPNDATLNSLLPAYAILADLQ-QAM 434 (667)
Q Consensus 360 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~ 434 (667)
+.+++++|.+++.. =...+.+.|+...|.++-.- ..+.+.+++......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666665432 22334455555544443333 333466666665555555444332211 122
Q ss_pred HHHHHHH---HhC--CCCCchHHHHHHHHHHhcCCHHHHHHHHhh
Q 005966 435 NIHCYLI---RYG--FLSVVEVSTGLIDIYSKCGSLESAHKIFSE 474 (667)
Q Consensus 435 ~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 474 (667)
.+.+.++ +.+ -.-++.....+...|.+.|++.+|+..|-.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 2222222 222 123567777788888888888888776644
No 480
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.56 E-value=60 Score=35.36 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=29.7
Q ss_pred HhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 005966 563 LGRAGRLDEAYDLIRTMPLKPTHAVWGALLGACVIHGNVELGEVAAKWLF 612 (667)
Q Consensus 563 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 612 (667)
...+|+++.|++...+.. |..+|..|+.....+|+.+-|+..|++..
T Consensus 653 aLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 445666666666666543 55566667666666777666666666543
No 481
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=33.14 E-value=1.4e+02 Score=24.14 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=28.7
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhh
Q 005966 594 ACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSA 631 (667)
Q Consensus 594 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 631 (667)
.+...-+.+.|+.+|+.+++..|++..++..|+..+-.
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 34455577999999999999999999988888877655
No 482
>PRK12356 glutaminase; Reviewed
Probab=33.04 E-value=4.5e+02 Score=25.41 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=17.4
Q ss_pred HHHHHHhHHcCCCCCCcccHHHHHHHhc
Q 005966 95 LKMFLGMLRLGEYNPDNYTYPIVIKACT 122 (667)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 122 (667)
..+|+++ |..|+...||.+.+.-.
T Consensus 86 ~~V~~~V----G~EPSG~~FNsi~~Le~ 109 (319)
T PRK12356 86 QAVREKI----GADPTGLPFNSVIAIEL 109 (319)
T ss_pred HHHHHHh----CCCCCCCCcchHHHhhc
Confidence 3556655 78999999999876543
No 483
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=32.82 E-value=2e+02 Score=23.95 Aligned_cols=63 Identities=11% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcC
Q 005966 198 VVFDWMLKSGVEPDCASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCG 261 (667)
Q Consensus 198 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 261 (667)
++.+.+++.|++++ .--..++..+...++.-.|..+++.+.+.+...+..|.-.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T-~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLT-PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcC-HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
No 484
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=32.80 E-value=5.2e+02 Score=25.87 Aligned_cols=174 Identities=17% Similarity=0.190 Sum_probs=93.2
Q ss_pred hcCCHHHHHHHHhhCCCCC--CCcchHHHHHH--------HHHHcCChHHHHHHHHHHHH-cCCCCCH----HHHHHHHH
Q 005966 461 KCGSLESAHKIFSEIPIKD--KDIVVWSVIIA--------GYGMHGHGETAVSLFKEMVQ-SGVQPNE----VTFTSALH 525 (667)
Q Consensus 461 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~--------~~~~~~~~~~a~~~~~~m~~-~~~~p~~----~~~~~ll~ 525 (667)
...++.+|..+-+.....- -+..++..+.. ++...|+...-...+..... ..+.-|. ...|.|++
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 3467777777766543321 34455544332 23455666666666665543 2234343 34677888
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCchhH-------HHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 005966 526 ACSHGGLLDEGLDLFNFMLENHQTCSRADH-------YTCIVDLLGRAGRLDEAYDLIRTM-PLKPTHAVWGALLGACVI 597 (667)
Q Consensus 526 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~ 597 (667)
.|...+.++.|..+..+..- |.... .--++...+-++++..|.+.|-.+ ...|....+... +
T Consensus 218 ~yL~n~lydqa~~lvsK~~~-----pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~-----q 287 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVY-----PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFR-----Q 287 (493)
T ss_pred HHhhhHHHHHHHHHhhcccC-----ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHH-----H
Confidence 88888999999988776542 32221 112344455678899998887766 455553222111 0
Q ss_pred cCCHHHHHHHHHHhhccCCC-----CC------chHHHHHHHHhhcCCchHHHHHHHHhhh
Q 005966 598 HGNVELGEVAAKWLFELEPE-----NP------GNYVLLSKLYSAVRRWKDAENVRDVMDE 647 (667)
Q Consensus 598 ~g~~~~A~~~~~~~~~~~p~-----~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 647 (667)
...+-.-+.+-+..--|+ .| ..|+.|..+ .+.|+.++..+.+++..+
T Consensus 288 --~v~k~~ivv~ll~geiPers~F~Qp~~~ksL~~Yf~Lt~A-Vr~gdlkkF~~~leq~k~ 345 (493)
T KOG2581|consen 288 --QVNKLMIVVELLLGEIPERSVFRQPGMRKSLRPYFKLTQA-VRLGDLKKFNETLEQFKD 345 (493)
T ss_pred --HHHHHHHHHHHHcCCCcchhhhcCccHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHH
Confidence 111112222222333342 12 345555543 456777777777666543
No 485
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=32.72 E-value=4.8e+02 Score=25.48 Aligned_cols=86 Identities=17% Similarity=0.176 Sum_probs=44.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCCCcchHHHHHHHHHHcCChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCH
Q 005966 455 LIDIYSKCGSLESAHKIFSEIPIKDKDIVVWSVIIAGYGMHGHGET-AVSLFKEMVQSGVQPNEVTFTSALHACSHGGLL 533 (667)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 533 (667)
+.+.++|.++.+.+..+-+.+.. -......++..++....=.+. +..+.+++... ||......++++.+.....
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~--lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~ 246 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPH--LPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPAS 246 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhh--CChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCch
Confidence 45566666665555555444443 222334445555444443333 33333444332 6777777777777766655
Q ss_pred HHHHHHHHHhHH
Q 005966 534 DEGLDLFNFMLE 545 (667)
Q Consensus 534 ~~A~~~~~~~~~ 545 (667)
......+..+..
T Consensus 247 ~~~~~~i~~~L~ 258 (340)
T PF12069_consen 247 DLVAILIDALLQ 258 (340)
T ss_pred hHHHHHHHHHhc
Confidence 555554555554
No 486
>PRK14700 recombination factor protein RarA; Provisional
Probab=32.54 E-value=4.5e+02 Score=25.13 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=44.0
Q ss_pred HHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHHhCC
Q 005966 382 WNAILAGCVH---NGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILAD-----LQQAMNIHCYLIRYGF 445 (667)
Q Consensus 382 ~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 445 (667)
+-.+|+++.+ ..+++.|+-++-+|.+.|..|....-..++.++-.-|. ...|...++....-|+
T Consensus 126 HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 126 FYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred hHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3345666655 47899999999999999988888877777777766553 3334444444444453
No 487
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.37 E-value=4.4e+02 Score=24.88 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=22.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCChHH
Q 005966 183 LISGYFKNAYAKEALVVFDWMLKSGVEPDCAS 214 (667)
Q Consensus 183 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 214 (667)
+.+-..+.+++++|+..+.+....|+..|..+
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~ 40 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKT 40 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence 33445566778888888888887777766544
No 488
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.30 E-value=4e+02 Score=24.48 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=35.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Q 005966 385 ILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAI-LADLQQAMNIHCYLI 441 (667)
Q Consensus 385 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~ 441 (667)
++..+-+.++++++.+.++++...+...+..--+.+-.+|-. .|....+.+++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 556677788999999999999888777766655555555532 344444555554443
No 489
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.61 E-value=2.3e+02 Score=30.05 Aligned_cols=86 Identities=8% Similarity=0.011 Sum_probs=47.6
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCch------hHHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc
Q 005966 527 CSHGGLLDEGLDLFNFMLENHQTCSRA------DHYTCIVDLLGRAGRLDEAYDLIRTMP-LKP-THAVWGALLGACVIH 598 (667)
Q Consensus 527 ~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~ 598 (667)
..+..+|..+.+.|+.-.. .++.|. .....|.-+|....++|.|.++++++. .+| ++.+-.....+....
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~--~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E 441 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLK--DIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAE 441 (872)
T ss_pred HHHHHHHHHHHHHHHHHHH--hccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 3455667777777766555 222221 123345555666667777777776663 343 333444444555666
Q ss_pred CCHHHHHHHHHHhhcc
Q 005966 599 GNVELGEVAAKWLFEL 614 (667)
Q Consensus 599 g~~~~A~~~~~~~~~~ 614 (667)
|+-++|..+.......
T Consensus 442 ~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 442 DKSEEALTCLQKIKSS 457 (872)
T ss_pred cchHHHHHHHHHHHhh
Confidence 6667776666665543
No 490
>PRK09857 putative transposase; Provisional
Probab=31.40 E-value=2.9e+02 Score=26.46 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHhhhCCCc
Q 005966 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVMDEKGLR 651 (667)
Q Consensus 589 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 651 (667)
..+++.....|+.++-.++++.+.+..|........+++-+.+.|..+++++...+|...|+.
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344444455677766677777666666666666778888888888888888888888888765
No 491
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=31.24 E-value=4.8e+02 Score=25.07 Aligned_cols=69 Identities=16% Similarity=0.092 Sum_probs=43.6
Q ss_pred CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhccCCC-CCchHH-HHHHHHhh--cCCchHHHHHHHHhhhC
Q 005966 580 PLKPTHA-VWGALLGACVIHGNVELGEVAAKWLFELEPE-NPGNYV-LLSKLYSA--VRRWKDAENVRDVMDEK 648 (667)
Q Consensus 580 ~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~-~l~~~~~~--~g~~~~A~~~~~~~~~~ 648 (667)
.+.|+.. +...........|++..|-..+-..+.+.++ ++.... ..|.+-.+ ..+|+-|.+-+.++++.
T Consensus 123 nf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 123 NFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred CCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4666543 5566666677889999988877655544333 232322 33333322 46899999999998764
No 492
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=31.02 E-value=5.1e+02 Score=25.23 Aligned_cols=133 Identities=11% Similarity=0.059 Sum_probs=83.8
Q ss_pred CCCchHHHHHHHHHHhcCC------------HHHHHHHHhhCCCCCC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 005966 446 LSVVEVSTGLIDIYSKCGS------------LESAHKIFSEIPIKDK-DIVVWSVIIAGYGMHGHGETAVSLFKEMVQSG 512 (667)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 512 (667)
|.|+.++-.++..--..-. .+.-+.++++..+..| +...+..++..+.+..+.++..+.++++....
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~ 95 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN 95 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 5677777777754332211 3455667777666555 45677778888888888888899999998863
Q ss_pred CCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHhHHhcCCC---------CchhH-------HHHHHHHHhhcCChHHHH
Q 005966 513 VQPNEVTFTSALHACSH---GGLLDEGLDLFNFMLENHQTC---------SRADH-------YTCIVDLLGRAGRLDEAY 573 (667)
Q Consensus 513 ~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~~---------~~~~~-------~~~l~~~~~~~g~~~~A~ 573 (667)
+-+...|...+..... .-.++....+|.+.++..... +...+ +.-+...+..+|..+.|+
T Consensus 96 -~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Av 174 (321)
T PF08424_consen 96 -PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAV 174 (321)
T ss_pred -CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHH
Confidence 2245566666665443 346778888887765522111 11112 222333455789999999
Q ss_pred HHHHhC
Q 005966 574 DLIRTM 579 (667)
Q Consensus 574 ~~~~~~ 579 (667)
.+++.+
T Consensus 175 a~~Qa~ 180 (321)
T PF08424_consen 175 ALWQAL 180 (321)
T ss_pred HHHHHH
Confidence 888875
No 493
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=30.86 E-value=2.7e+02 Score=29.03 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCHHHHHHHhcccCCC--Chh---hHHHHHHHHHHcCChhHHHHHHHHHHH
Q 005966 150 NCLIAMYMNFGEVKAARKVFDAMWEH--SVV---SWNTLISGYFKNAYAKEALVVFDWMLK 205 (667)
Q Consensus 150 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~~~~~~A~~~~~~m~~ 205 (667)
..++.-|.+.+++++|..++..|.=. ... +.+.+.+.+.+..--.+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35677899999999999999888321 222 344445555555444444444555443
No 494
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.51 E-value=8.1e+02 Score=27.43 Aligned_cols=376 Identities=10% Similarity=0.016 Sum_probs=0.0
Q ss_pred hHhhhcCChhhHHHhhcccCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHcCCCCCCcccHHHHHHHhccccchHHHH
Q 005966 52 SLVRAYGHVSNVRILFDEMSERSSFLYNTVMKMYAQNGASHDSLKMFLGMLRLGEYNPDNYTYPIVIKACTDLAWRKLGI 131 (667)
Q Consensus 52 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 131 (667)
..|...|++++|.+.-..-|..---++-.-...+.+.+++..|-++|-++.+. |..+.--+....+.+ +.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~---------FEEVaLKFl~~~~~~-~L 435 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETLSS---------FEEVALKFLEINQER-AL 435 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhh---------HHHHHHHHHhcCCHH-HH
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHhcccCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 005966 132 ALHGRVLITGFDMDTFVGNCLIAMYMNFGEVKAARKVFDAMWEHSVVSWNTLISGYFKNAYAKEALVVFDWMLKSGVEPD 211 (667)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 211 (667)
..|-.=+-..++|...+--.++..+. .+--++-+..|..+|.......-..+ +...+-|..... ..-+
T Consensus 436 ~~~L~KKL~~lt~~dk~q~~~Lv~WL----lel~L~~Ln~l~~~de~~~en~~~~~------~~~~re~~~~~~--~~~~ 503 (911)
T KOG2034|consen 436 RTFLDKKLDRLTPEDKTQRDALVTWL----LELYLEQLNDLDSTDEEALENWRLEY------DEVQREFSKFLV--LHKD 503 (911)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHHH----HHHHHHHHhcccccChhHHHHHHHHH------HHHHHHHHHHHH--hhHH
Q ss_pred hHHHHHHHHHcccCcchHHHHHHHHHHHhcCCCcchhHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhC
Q 005966 212 CASVVSVLPACGYLKEIEMGRMIHELVAGGRLGKNIAAWNALVDMYVKCGSVNEARLVFDRMSERDVVTWTSMINGYALN 291 (667)
Q Consensus 212 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 291 (667)
.....++...+...|+.+....+-..+.+ |..++.-+...+.+++|++++..-..+...---+-+-.
T Consensus 504 ~~nretv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~yk~ap~Li---- 570 (911)
T KOG2034|consen 504 ELNRETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELFYKYAPELI---- 570 (911)
T ss_pred hhhHHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHhhhHHH----
Q ss_pred CChHHHHHHHHHHHhcCCCCChhhHHHHHHHhhcc---cchHHHHHHHHHHHHhcCCCCchHHhHHHHHHHhcCCHHHHH
Q 005966 292 GDVRNALGLFQLMQFEGVRPNSLTIGSLLSACSSL---YYLKRGRSLHAWTIKQNLECEVIVETALIDMYAKCNLVKLSF 368 (667)
Q Consensus 292 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 368 (667)
.....+..+.....+-..+......++..+.+. .....+...++.....-...++..+|.++..|++..+-+.-.
T Consensus 571 --~~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~ 648 (911)
T KOG2034|consen 571 --THSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLL 648 (911)
T ss_pred --hcCcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHH
Q ss_pred HHHhccCCCCccc--HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCC
Q 005966 369 QVFARTSKKKTVP--WNAILAGCVHNGLARKAVELFRQMLVEVVEPNDATLNSLLPAYAILADLQQAMNIHCYLIRYGFL 446 (667)
Q Consensus 369 ~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 446 (667)
.+-.....++-.. ...-++.|.+.+....+..++..|. .|...+..-.+.. .+.|..+-.........
T Consensus 649 ~le~~~~~~~~~~YDl~~alRlc~~~~~~ra~V~l~~~l~---------l~~~aVdlAL~~d-~dlak~~A~~~ee~e~l 718 (911)
T KOG2034|consen 649 YLEIIKFMKSRVHYDLDYALRLCLKFKKTRACVFLLCMLN---------LFEDAVDLALQFD-IDLAKVIANDPEEDEDL 718 (911)
T ss_pred HHHHHhhccccceecHHHHHHHHHHhCccceeeeHHHHHH---------HHHHHHHHHhhcC-HHHHhhhhcChhhHHHH
Q ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHhh
Q 005966 447 SVVEVSTGLIDIYSKCGSLESAHKIFSE 474 (667)
Q Consensus 447 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 474 (667)
.-.--...-=.......+..++...+..
T Consensus 719 rKkLWLkIAkh~v~~~~~ikk~i~~Lk~ 746 (911)
T KOG2034|consen 719 RKKLWLKIAKHVVKQENDIKKAIRFLKE 746 (911)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHhcc
No 495
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=29.97 E-value=2.3e+02 Score=20.94 Aligned_cols=36 Identities=11% Similarity=0.235 Sum_probs=21.9
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCh
Q 005966 259 KCGSVNEARLVFDRMSERDVVTWTSMINGYALNGDV 294 (667)
Q Consensus 259 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 294 (667)
..-+.+.|.++++.++.+...+|..+..++-..|..
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQT 77 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCch
Confidence 334566666666666666666666666666555543
No 496
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=29.84 E-value=72 Score=22.91 Aligned_cols=17 Identities=24% Similarity=0.003 Sum_probs=14.6
Q ss_pred hcCCHHHHHHHHHHhhc
Q 005966 597 IHGNVELGEVAAKWLFE 613 (667)
Q Consensus 597 ~~g~~~~A~~~~~~~~~ 613 (667)
..|++++|+.+|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 56899999999998876
No 497
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.84 E-value=6.4e+02 Score=26.00 Aligned_cols=76 Identities=18% Similarity=0.085 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhccCCCCCchHHHHHHHHhhcCCchHHHHHHHHh---hhCCCccCCCeeEEEeCCE
Q 005966 589 GALLGACVIHGNVELGEVAAKWLFELEPENPGNYVLLSKLYSAVRRWKDAENVRDVM---DEKGLRKAPAHSLIEVRNI 664 (667)
Q Consensus 589 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~ 664 (667)
..-++++....+...+.+-.+.+.-...+.+.+...-.+.++..|++.+|.+.+... ...|..++|.++--...|+
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NN 288 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNN 288 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecC
Confidence 334555666677777777777776666677778888899999999999999987653 2344444444444444333
No 498
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=29.83 E-value=3e+02 Score=22.23 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=29.0
Q ss_pred HHHHHHHHhHHhcCCCCchhHHHHHHHHHhhcCChHHHHHHHHh
Q 005966 535 EGLDLFNFMLENHQTCSRADHYTCIVDLLGRAGRLDEAYDLIRT 578 (667)
Q Consensus 535 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 578 (667)
.+..+|+.|....--.-.+..|......+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777776332233455677777777778888888777754
No 499
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=29.72 E-value=8.9e+02 Score=27.64 Aligned_cols=148 Identities=11% Similarity=0.072 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCch-hHHHHHHHHHh
Q 005966 486 SVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEVTFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRA-DHYTCIVDLLG 564 (667)
Q Consensus 486 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 564 (667)
|..+..+...++.+......++..+.+ +..--...+.++...+. .+...+++...+.....|-+ .-|-++..
T Consensus 676 n~~l~~l~~~~~~~~~~~~~~~~~~a~---~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa--- 748 (863)
T TIGR02414 676 NACLSYLSAADDAEIRNLALEQFKSAD---NMTDRLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQA--- 748 (863)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHh---
Confidence 445555555555544444444444432 22222333344443332 23333444444433332332 23433332
Q ss_pred hcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcC-------CHHHHHHHHHHhhccCCCCCchHHHHHHHHhhc
Q 005966 565 RAGRLDEAYDLIRTM----PLKP-THAVWGALLGACVIHG-------NVELGEVAAKWLFELEPENPGNYVLLSKLYSAV 632 (667)
Q Consensus 565 ~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 632 (667)
.. ....+++.++++ ...+ ++.-..+|+.++...+ +-+.=.-+.+.++++++-||.+-..|+..+.+=
T Consensus 749 ~~-~~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w 827 (863)
T TIGR02414 749 TS-PRPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRW 827 (863)
T ss_pred CC-CcccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhh
Confidence 22 233344444443 2222 3445677888775332 223334566678899999999999999999988
Q ss_pred CCchHHHHH
Q 005966 633 RRWKDAENV 641 (667)
Q Consensus 633 g~~~~A~~~ 641 (667)
.++++..+.
T Consensus 828 ~~~~~~r~~ 836 (863)
T TIGR02414 828 RKLDPKRQE 836 (863)
T ss_pred hcCCHHHHH
Confidence 888877663
No 500
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.70 E-value=4.4e+02 Score=28.12 Aligned_cols=94 Identities=7% Similarity=0.068 Sum_probs=63.1
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCchhHH
Q 005966 483 VVWSVIIAGYGMHGHGETAVSLFKEMVQSGVQPNEV------TFTSALHACSHGGLLDEGLDLFNFMLENHQTCSRADHY 556 (667)
Q Consensus 483 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 556 (667)
..||..-.. .+..++..+.+.|..-... +..|.. ....+.-+|....+.|.|.++++++.+ ..+.++-+-
T Consensus 356 iLWn~A~~~-F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~--~d~~~~l~q 431 (872)
T KOG4814|consen 356 LLWNTAKKL-FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE--VDRQSPLCQ 431 (872)
T ss_pred HHHHhhHHH-HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--hccccHHHH
Confidence 445554443 4567788888888876553 333332 245566677888899999999999987 222333333
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC
Q 005966 557 TCIVDLLGRAGRLDEAYDLIRTMP 580 (667)
Q Consensus 557 ~~l~~~~~~~g~~~~A~~~~~~~~ 580 (667)
..+.......|.-++|+.++....
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHH
Confidence 345567778899999999888773
Done!